Query 002884
Match_columns 870
No_of_seqs 669 out of 3643
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 12:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 6E-141 1E-145 1179.8 28.1 497 353-858 1-506 (506)
2 PF03141 Methyltransf_29: Puta 99.9 1.1E-26 2.5E-31 261.6 8.9 136 719-860 115-262 (506)
3 PRK10258 biotin biosynthesis p 99.8 1.6E-20 3.6E-25 197.6 15.9 206 467-719 42-249 (251)
4 KOG2940 Predicted methyltransf 99.8 2.8E-20 6E-25 191.8 6.1 219 466-722 71-298 (325)
5 PLN02336 phosphoethanolamine N 99.8 1.8E-19 4E-24 206.5 11.1 100 467-570 37-143 (475)
6 COG2226 UbiE Methylase involve 99.6 1.8E-15 4E-20 159.8 13.7 101 467-569 51-156 (238)
7 PF01209 Ubie_methyltran: ubiE 99.6 3.6E-15 7.7E-20 157.4 10.4 102 466-569 46-153 (233)
8 PF08241 Methyltransf_11: Meth 99.6 4.4E-15 9.5E-20 130.7 7.2 92 472-567 1-95 (95)
9 TIGR02072 BioC biotin biosynth 99.5 5.2E-14 1.1E-18 144.7 13.9 201 467-720 34-240 (240)
10 PLN02244 tocopherol O-methyltr 99.5 2.1E-13 4.5E-18 151.2 19.3 102 466-569 117-223 (340)
11 PLN02233 ubiquinone biosynthes 99.5 2E-13 4.4E-18 146.0 18.4 104 466-570 72-183 (261)
12 PF13489 Methyltransf_23: Meth 99.5 3E-14 6.4E-19 137.8 9.3 150 451-614 9-160 (161)
13 PTZ00098 phosphoethanolamine N 99.5 2.4E-13 5.1E-18 145.7 15.3 173 423-614 20-199 (263)
14 TIGR02752 MenG_heptapren 2-hep 99.4 4.1E-12 8.9E-17 132.0 17.4 102 466-569 44-151 (231)
15 PRK01544 bifunctional N5-gluta 99.4 4.2E-12 9E-17 147.9 19.3 117 722-842 348-483 (506)
16 PRK11873 arsM arsenite S-adeno 99.4 3.2E-12 7E-17 136.6 15.7 109 466-576 76-190 (272)
17 PLN02396 hexaprenyldihydroxybe 99.4 4.6E-12 1E-16 139.8 17.0 102 467-570 131-236 (322)
18 PRK15068 tRNA mo(5)U34 methylt 99.4 3.6E-12 7.7E-17 140.6 15.1 143 467-614 122-271 (322)
19 PF12847 Methyltransf_18: Meth 99.4 2.6E-12 5.7E-17 117.9 10.8 102 467-569 1-111 (112)
20 KOG1540 Ubiquinone biosynthesi 99.4 4.4E-12 9.5E-17 133.8 12.7 102 465-568 98-213 (296)
21 TIGR00740 methyltransferase, p 99.4 1.3E-11 2.7E-16 129.7 16.1 101 467-571 53-163 (239)
22 PRK14103 trans-aconitate 2-met 99.3 3.1E-12 6.7E-17 135.7 10.9 95 466-569 28-126 (255)
23 PF13847 Methyltransf_31: Meth 99.3 5.2E-12 1.1E-16 123.6 11.4 102 467-571 3-112 (152)
24 PLN02336 phosphoethanolamine N 99.3 1.5E-11 3.3E-16 141.5 16.6 142 466-614 265-411 (475)
25 PRK05785 hypothetical protein; 99.3 7.3E-12 1.6E-16 131.5 11.7 88 467-563 51-141 (226)
26 TIGR00452 methyltransferase, p 99.3 2.2E-11 4.7E-16 134.1 15.3 143 467-614 121-270 (314)
27 COG2227 UbiG 2-polyprenyl-3-me 99.3 2.8E-12 6.2E-17 134.8 7.8 101 467-569 59-161 (243)
28 PRK08317 hypothetical protein; 99.3 5.3E-11 1.1E-15 122.1 16.9 102 466-569 18-124 (241)
29 PRK11036 putative S-adenosyl-L 99.3 1.2E-11 2.6E-16 131.3 12.4 101 467-569 44-149 (255)
30 PRK11207 tellurite resistance 99.3 1.2E-11 2.6E-16 126.9 11.9 99 467-568 30-133 (197)
31 TIGR00477 tehB tellurite resis 99.3 1.5E-11 3.3E-16 126.0 12.0 99 467-568 30-132 (195)
32 PRK15451 tRNA cmo(5)U34 methyl 99.3 3E-11 6.4E-16 128.1 14.0 101 466-570 55-165 (247)
33 PRK11088 rrmA 23S rRNA methylt 99.3 1.6E-11 3.4E-16 131.9 12.1 102 467-582 85-193 (272)
34 KOG4300 Predicted methyltransf 99.3 3.9E-11 8.5E-16 123.4 13.5 100 468-568 77-181 (252)
35 PRK01683 trans-aconitate 2-met 99.3 3.4E-11 7.3E-16 127.5 13.6 97 466-569 30-130 (258)
36 PF08242 Methyltransf_12: Meth 99.3 2E-12 4.4E-17 117.1 2.3 93 472-565 1-99 (99)
37 PLN02490 MPBQ/MSBQ methyltrans 99.2 1E-10 2.2E-15 130.0 15.9 136 466-614 112-253 (340)
38 PF13649 Methyltransf_25: Meth 99.2 6.9E-12 1.5E-16 114.5 5.4 92 471-563 1-101 (101)
39 PRK00121 trmB tRNA (guanine-N( 99.2 7.8E-11 1.7E-15 121.6 11.0 100 467-568 40-155 (202)
40 smart00828 PKS_MT Methyltransf 99.2 1.3E-10 2.9E-15 120.2 12.5 99 469-570 1-105 (224)
41 PRK00107 gidB 16S rRNA methylt 99.2 2.7E-10 5.9E-15 116.9 14.2 96 467-569 45-145 (187)
42 TIGR02021 BchM-ChlM magnesium 99.2 1.9E-10 4E-15 119.3 13.1 143 467-616 55-205 (219)
43 PRK12335 tellurite resistance 99.2 8.9E-11 1.9E-15 127.2 11.0 98 468-568 121-222 (287)
44 PF02353 CMAS: Mycolic acid cy 99.2 1.8E-10 3.9E-15 124.6 12.8 101 465-569 60-166 (273)
45 PRK06922 hypothetical protein; 99.2 1.8E-10 3.9E-15 135.9 13.2 102 467-570 418-538 (677)
46 COG2230 Cfa Cyclopropane fatty 99.1 6.2E-10 1.4E-14 120.5 15.1 168 437-614 46-220 (283)
47 TIGR00091 tRNA (guanine-N(7)-) 99.1 3E-10 6.4E-15 116.4 12.0 100 467-568 16-131 (194)
48 PRK00216 ubiE ubiquinone/menaq 99.1 9.7E-10 2.1E-14 113.5 15.7 103 467-570 51-159 (239)
49 smart00138 MeTrc Methyltransfe 99.1 3.5E-10 7.7E-15 121.6 11.8 126 442-568 71-241 (264)
50 PF05175 MTS: Methyltransferas 99.1 1.5E-09 3.3E-14 108.9 15.4 109 454-568 22-139 (170)
51 TIGR02469 CbiT precorrin-6Y C5 99.1 1.1E-09 2.5E-14 101.5 13.0 97 467-568 19-121 (124)
52 TIGR00406 prmA ribosomal prote 99.1 8E-10 1.7E-14 120.1 13.8 97 467-569 159-259 (288)
53 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 3.3E-09 7.2E-14 108.4 16.6 100 467-569 39-143 (223)
54 TIGR00138 gidB 16S rRNA methyl 99.1 1.2E-09 2.6E-14 111.4 13.2 95 467-568 42-141 (181)
55 PF03848 TehB: Tellurite resis 99.1 5.7E-10 1.2E-14 115.0 10.9 99 467-568 30-132 (192)
56 PLN02585 magnesium protoporphy 99.1 1.3E-09 2.7E-14 120.4 14.3 144 467-618 144-300 (315)
57 PRK07580 Mg-protoporphyrin IX 99.0 2E-09 4.2E-14 111.5 13.6 143 467-615 63-212 (230)
58 PRK08287 cobalt-precorrin-6Y C 99.0 3E-09 6.5E-14 107.8 14.4 97 466-568 30-130 (187)
59 PRK15001 SAM-dependent 23S rib 99.0 2.5E-09 5.5E-14 120.5 15.2 101 468-569 229-340 (378)
60 PRK06202 hypothetical protein; 99.0 1.7E-09 3.6E-14 113.3 11.2 97 466-568 59-165 (232)
61 PRK11188 rrmJ 23S rRNA methylt 99.0 2.4E-09 5.1E-14 111.5 12.0 101 466-580 50-175 (209)
62 PRK09489 rsmC 16S ribosomal RN 99.0 4.3E-09 9.3E-14 117.4 14.5 98 468-569 197-303 (342)
63 COG4106 Tam Trans-aconitate me 99.0 7.2E-10 1.6E-14 115.0 7.7 96 467-569 30-129 (257)
64 PRK14121 tRNA (guanine-N(7)-)- 99.0 3E-09 6.4E-14 120.0 13.2 100 467-568 122-234 (390)
65 TIGR00537 hemK_rel_arch HemK-r 99.0 5.4E-09 1.2E-13 105.3 13.7 100 467-569 19-140 (179)
66 TIGR03840 TMPT_Se_Te thiopurin 99.0 2.5E-09 5.4E-14 111.8 11.7 102 467-568 34-151 (213)
67 KOG1270 Methyltransferases [Co 99.0 6E-10 1.3E-14 118.4 6.9 98 468-569 90-195 (282)
68 TIGR03587 Pse_Me-ase pseudamin 99.0 2.3E-09 5.1E-14 111.2 11.2 108 451-569 30-142 (204)
69 PRK11705 cyclopropane fatty ac 99.0 3.6E-09 7.9E-14 119.6 13.6 97 466-569 166-267 (383)
70 PF05401 NodS: Nodulation prot 99.0 2.3E-09 4.9E-14 110.5 10.8 100 466-569 42-146 (201)
71 KOG1541 Predicted protein carb 99.0 2.1E-09 4.6E-14 111.7 10.4 97 467-569 50-160 (270)
72 TIGR03534 RF_mod_PrmC protein- 99.0 1.2E-08 2.7E-13 106.7 16.2 101 467-568 87-216 (251)
73 PF08003 Methyltransf_9: Prote 99.0 3.3E-09 7E-14 115.5 11.9 109 453-569 105-219 (315)
74 TIGR02081 metW methionine bios 99.0 1.7E-08 3.7E-13 103.1 16.4 87 467-561 13-104 (194)
75 TIGR01983 UbiG ubiquinone bios 99.0 5.4E-09 1.2E-13 107.9 12.8 101 467-569 45-149 (224)
76 PRK00517 prmA ribosomal protei 99.0 7.5E-09 1.6E-13 110.2 14.2 92 467-569 119-213 (250)
77 PRK14967 putative methyltransf 99.0 1.6E-08 3.5E-13 105.6 16.0 100 467-568 36-158 (223)
78 PRK05134 bifunctional 3-demeth 99.0 6.9E-09 1.5E-13 108.2 13.2 102 466-569 47-151 (233)
79 COG2264 PrmA Ribosomal protein 98.9 7.6E-09 1.6E-13 113.0 13.8 98 467-569 162-263 (300)
80 COG2813 RsmC 16S RNA G1207 met 98.9 1.2E-08 2.6E-13 111.1 15.2 130 432-570 126-267 (300)
81 TIGR00080 pimt protein-L-isoas 98.9 6.8E-09 1.5E-13 107.9 12.3 95 466-568 76-176 (215)
82 PRK04266 fibrillarin; Provisio 98.9 1.7E-08 3.8E-13 106.5 15.2 97 466-568 71-175 (226)
83 PF07021 MetW: Methionine bios 98.9 2.8E-09 6.2E-14 109.4 9.0 91 467-568 13-108 (193)
84 PRK07402 precorrin-6B methylas 98.9 8.8E-09 1.9E-13 105.3 12.6 98 466-569 39-142 (196)
85 PRK13944 protein-L-isoaspartat 98.9 9.2E-09 2E-13 106.4 12.5 95 466-568 71-172 (205)
86 COG4976 Predicted methyltransf 98.9 5E-10 1.1E-14 116.9 2.9 134 467-614 125-262 (287)
87 TIGR02716 C20_methyl_CrtF C-20 98.9 1.8E-08 4E-13 109.9 15.1 101 466-570 148-255 (306)
88 PF06325 PrmA: Ribosomal prote 98.9 8.3E-09 1.8E-13 112.9 11.7 120 441-569 137-259 (295)
89 KOG3010 Methyltransferase [Gen 98.9 1.4E-09 3.1E-14 114.3 5.0 91 468-566 34-133 (261)
90 PRK14968 putative methyltransf 98.9 3.8E-08 8.3E-13 98.3 14.9 100 467-568 23-147 (188)
91 PRK13942 protein-L-isoaspartat 98.9 1.8E-08 3.9E-13 104.9 12.2 95 466-568 75-175 (212)
92 PRK13255 thiopurine S-methyltr 98.9 1E-08 2.2E-13 107.6 10.3 98 467-568 37-154 (218)
93 TIGR01177 conserved hypothetic 98.8 3E-08 6.5E-13 109.7 14.3 103 466-569 181-294 (329)
94 PRK00377 cbiT cobalt-precorrin 98.8 3.1E-08 6.8E-13 101.7 13.4 98 466-568 39-144 (198)
95 TIGR03438 probable methyltrans 98.8 3.7E-08 7.9E-13 107.9 14.6 116 467-584 63-191 (301)
96 PF08241 Methyltransf_11: Meth 98.8 9.3E-10 2E-14 96.8 1.6 91 726-821 1-95 (95)
97 PF05148 Methyltransf_8: Hypot 98.8 5E-09 1.1E-13 108.8 7.2 117 467-621 72-189 (219)
98 KOG1271 Methyltransferases [Ge 98.8 2.3E-08 5.1E-13 101.5 11.4 137 444-583 43-193 (227)
99 cd02440 AdoMet_MTases S-adenos 98.8 3.2E-08 6.9E-13 85.9 10.1 97 470-568 1-103 (107)
100 PLN03075 nicotianamine synthas 98.8 4.6E-08 1E-12 107.0 13.1 101 467-568 123-232 (296)
101 PLN02232 ubiquinone biosynthes 98.8 4.5E-08 9.8E-13 97.6 11.8 79 491-570 1-82 (160)
102 PF13659 Methyltransf_26: Meth 98.8 1.4E-08 3E-13 94.1 7.1 100 468-568 1-114 (117)
103 PTZ00146 fibrillarin; Provisio 98.8 5.7E-08 1.2E-12 106.0 12.8 98 466-568 131-236 (293)
104 PF05219 DREV: DREV methyltran 98.8 8.8E-08 1.9E-12 102.5 13.8 179 437-637 64-249 (265)
105 PRK00312 pcm protein-L-isoaspa 98.8 7.9E-08 1.7E-12 99.4 13.1 96 466-569 77-175 (212)
106 KOG3045 Predicted RNA methylas 98.8 2.6E-08 5.6E-13 105.7 9.2 85 466-568 179-263 (325)
107 TIGR00438 rrmJ cell division p 98.7 8.5E-08 1.8E-12 97.5 12.5 92 466-568 31-145 (188)
108 PRK09328 N5-glutamine S-adenos 98.7 9.8E-08 2.1E-12 101.8 13.0 102 466-568 107-237 (275)
109 TIGR03533 L3_gln_methyl protei 98.7 1E-07 2.2E-12 103.8 13.0 102 467-569 121-251 (284)
110 PRK10901 16S rRNA methyltransf 98.7 1.2E-07 2.7E-12 108.6 12.6 104 466-570 243-373 (427)
111 KOG1975 mRNA cap methyltransfe 98.7 4.1E-08 8.9E-13 107.0 8.1 105 466-571 116-239 (389)
112 COG4123 Predicted O-methyltran 98.7 1.9E-07 4.1E-12 99.8 12.2 102 467-568 44-169 (248)
113 PRK11805 N5-glutamine S-adenos 98.6 2.2E-07 4.8E-12 102.3 12.6 100 469-569 135-263 (307)
114 PRK00811 spermidine synthase; 98.6 4.3E-07 9.3E-12 98.9 14.7 101 467-568 76-190 (283)
115 TIGR00536 hemK_fam HemK family 98.6 2.5E-07 5.4E-12 100.5 12.6 100 469-569 116-244 (284)
116 PRK04457 spermidine synthase; 98.6 2.3E-07 5.1E-12 99.9 12.3 101 466-568 65-176 (262)
117 PRK14901 16S rRNA methyltransf 98.6 1.8E-07 3.9E-12 107.5 11.8 106 465-571 250-386 (434)
118 TIGR00563 rsmB ribosomal RNA s 98.6 1.5E-07 3.3E-12 107.7 11.2 105 466-571 237-370 (426)
119 PRK14966 unknown domain/N5-glu 98.6 4.2E-07 9.1E-12 103.6 13.7 100 468-568 252-380 (423)
120 PF03291 Pox_MCEL: mRNA cappin 98.6 1.9E-07 4.2E-12 103.9 10.0 103 467-570 62-187 (331)
121 TIGR00446 nop2p NOL1/NOP2/sun 98.6 3.1E-07 6.7E-12 98.9 10.9 105 466-571 70-201 (264)
122 PRK14903 16S rRNA methyltransf 98.6 2.9E-07 6.2E-12 105.8 11.3 106 465-571 235-368 (431)
123 PRK13256 thiopurine S-methyltr 98.5 3.4E-07 7.4E-12 96.9 10.5 102 467-568 43-162 (226)
124 PRK13943 protein-L-isoaspartat 98.5 6.1E-07 1.3E-11 99.5 12.9 95 466-568 79-179 (322)
125 PRK14904 16S rRNA methyltransf 98.5 4.6E-07 1E-11 104.4 11.9 103 466-570 249-378 (445)
126 TIGR03704 PrmC_rel_meth putati 98.5 1.7E-06 3.6E-11 92.7 14.2 98 468-568 87-215 (251)
127 COG2242 CobL Precorrin-6B meth 98.5 2.3E-06 4.9E-11 87.9 14.1 98 464-568 31-134 (187)
128 PHA03411 putative methyltransf 98.5 1.9E-06 4.1E-11 93.6 13.5 96 467-568 64-182 (279)
129 PF02390 Methyltransf_4: Putat 98.4 9.1E-07 2E-11 91.5 10.1 100 468-569 18-133 (195)
130 COG2518 Pcm Protein-L-isoaspar 98.4 1.9E-06 4.1E-11 90.0 12.3 96 465-568 70-168 (209)
131 TIGR00417 speE spermidine synt 98.4 3E-06 6.6E-11 91.5 14.3 101 467-568 72-185 (270)
132 smart00650 rADc Ribosomal RNA 98.4 1.4E-06 3E-11 87.3 10.8 96 467-568 13-112 (169)
133 PRK15001 SAM-dependent 23S rib 98.4 2.9E-05 6.4E-10 88.0 22.2 128 723-858 230-373 (378)
134 PRK14902 16S rRNA methyltransf 98.4 1.4E-06 3.1E-11 100.3 11.8 103 466-570 249-380 (444)
135 PF01135 PCMT: Protein-L-isoas 98.4 9.5E-07 2.1E-11 92.5 8.9 96 465-568 70-171 (209)
136 PF13489 Methyltransf_23: Meth 98.4 6.3E-08 1.4E-12 93.7 0.1 94 721-825 22-117 (161)
137 PRK13168 rumA 23S rRNA m(5)U19 98.4 2.9E-06 6.4E-11 97.7 13.6 98 466-569 296-400 (443)
138 PRK00107 gidB 16S rRNA methylt 98.4 6.8E-07 1.5E-11 92.0 6.8 127 723-859 47-187 (187)
139 PLN02781 Probable caffeoyl-CoA 98.4 2E-06 4.3E-11 91.2 10.5 100 467-571 68-180 (234)
140 PRK10909 rsmD 16S rRNA m(2)G96 98.3 5.2E-06 1.1E-10 86.3 12.8 98 467-568 53-158 (199)
141 PLN02366 spermidine synthase 98.3 7.9E-06 1.7E-10 90.3 14.9 101 467-568 91-205 (308)
142 KOG2361 Predicted methyltransf 98.3 1.3E-06 2.8E-11 92.5 8.2 114 455-569 57-183 (264)
143 COG2890 HemK Methylase of poly 98.3 4.6E-06 9.9E-11 90.9 12.6 97 470-568 113-237 (280)
144 COG0220 Predicted S-adenosylme 98.3 4E-06 8.6E-11 88.9 11.5 98 469-568 50-163 (227)
145 smart00828 PKS_MT Methyltransf 98.3 3.5E-07 7.6E-12 94.8 2.9 113 724-844 2-141 (224)
146 PRK01581 speE spermidine synth 98.3 6.4E-06 1.4E-10 92.6 12.8 127 439-568 123-267 (374)
147 COG0500 SmtA SAM-dependent met 98.3 7.8E-06 1.7E-10 72.4 10.9 96 471-569 52-155 (257)
148 PF00891 Methyltransf_2: O-met 98.3 3E-06 6.5E-11 89.3 9.6 98 466-573 99-203 (241)
149 PF06080 DUF938: Protein of un 98.3 3.9E-06 8.4E-11 87.5 10.2 118 450-574 13-146 (204)
150 TIGR00479 rumA 23S rRNA (uraci 98.3 7E-06 1.5E-10 94.1 13.0 98 466-568 291-395 (431)
151 PRK15128 23S rRNA m(5)C1962 me 98.3 6.6E-06 1.4E-10 93.8 12.5 103 467-570 220-340 (396)
152 PRK03522 rumB 23S rRNA methylu 98.2 9.4E-06 2E-10 89.6 12.9 98 467-569 173-274 (315)
153 KOG2899 Predicted methyltransf 98.2 2.3E-06 4.9E-11 90.7 7.6 102 467-568 58-208 (288)
154 PLN02244 tocopherol O-methyltr 98.2 5E-07 1.1E-11 100.7 2.8 98 722-823 119-223 (340)
155 PRK11783 rlmL 23S rRNA m(2)G24 98.2 5.5E-06 1.2E-10 100.7 11.9 102 467-569 538-656 (702)
156 PRK11036 putative S-adenosyl-L 98.2 6.3E-07 1.4E-11 95.4 3.2 94 723-822 46-148 (255)
157 TIGR00478 tly hemolysin TlyA f 98.2 4.9E-06 1.1E-10 88.3 8.9 95 467-572 75-174 (228)
158 PF05891 Methyltransf_PK: AdoM 98.2 2.8E-06 6E-11 89.2 6.9 102 467-568 55-160 (218)
159 PF02353 CMAS: Mycolic acid cy 98.2 3.1E-07 6.7E-12 99.7 -0.6 105 715-822 58-165 (273)
160 PLN02233 ubiquinone biosynthes 98.2 8.9E-07 1.9E-11 95.2 2.6 96 723-823 75-182 (261)
161 PF01739 CheR: CheR methyltran 98.2 4.8E-06 1.1E-10 86.4 7.9 102 467-568 31-174 (196)
162 PRK10258 biotin biosynthesis p 98.2 1.4E-06 3.1E-11 92.1 4.0 97 721-823 42-140 (251)
163 PRK03612 spermidine synthase; 98.1 2E-05 4.4E-10 92.8 13.8 103 466-569 296-415 (521)
164 PRK14103 trans-aconitate 2-met 98.1 1.1E-06 2.4E-11 93.5 2.9 95 722-823 30-126 (255)
165 PRK10611 chemotaxis methyltran 98.1 9E-06 2E-10 89.0 9.6 101 468-568 116-261 (287)
166 PHA03412 putative methyltransf 98.1 9.4E-06 2E-10 86.5 9.2 91 468-564 50-158 (241)
167 KOG2904 Predicted methyltransf 98.1 4.4E-05 9.6E-10 82.3 14.1 132 449-584 131-299 (328)
168 PTZ00098 phosphoethanolamine N 98.1 8.8E-07 1.9E-11 95.3 1.3 97 723-824 54-157 (263)
169 COG2226 UbiE Methylase involve 98.1 1.5E-06 3.3E-11 92.6 2.7 96 723-823 53-156 (238)
170 TIGR02752 MenG_heptapren 2-hep 98.1 5E-06 1.1E-10 86.6 6.4 96 723-824 47-152 (231)
171 COG2519 GCD14 tRNA(1-methylade 98.1 4.4E-05 9.5E-10 81.8 13.1 96 466-569 93-195 (256)
172 TIGR00477 tehB tellurite resis 98.1 1.8E-06 3.9E-11 88.8 2.6 115 723-845 32-167 (195)
173 PF12847 Methyltransf_18: Meth 98.1 7.8E-07 1.7E-11 81.7 -0.0 96 723-823 3-111 (112)
174 TIGR02085 meth_trns_rumB 23S r 98.1 3.9E-05 8.4E-10 86.9 13.4 98 467-569 233-334 (374)
175 PRK01544 bifunctional N5-gluta 98.1 2.6E-05 5.7E-10 91.6 12.4 102 465-568 345-461 (506)
176 TIGR00537 hemK_rel_arch HemK-r 98.1 8.4E-06 1.8E-10 82.2 7.2 130 723-858 21-177 (179)
177 PF05724 TPMT: Thiopurine S-me 98.0 1.4E-05 2.9E-10 84.3 8.6 102 466-568 36-154 (218)
178 KOG1269 SAM-dependent methyltr 98.0 1.1E-05 2.5E-10 90.9 8.5 101 466-568 109-214 (364)
179 COG1041 Predicted DNA modifica 98.0 2.3E-05 4.9E-10 87.3 10.5 117 452-569 182-310 (347)
180 PRK11207 tellurite resistance 98.0 2E-06 4.4E-11 88.6 1.6 115 723-845 32-168 (197)
181 PRK11727 23S rRNA mA1618 methy 98.0 4.1E-05 8.9E-10 85.1 12.0 99 447-548 90-203 (321)
182 PLN02396 hexaprenyldihydroxybe 98.0 2.8E-06 6E-11 94.4 2.8 94 724-823 134-235 (322)
183 TIGR00138 gidB 16S rRNA methyl 98.0 4.1E-06 8.9E-11 85.6 3.5 111 723-843 44-163 (181)
184 PRK15068 tRNA mo(5)U34 methylt 98.0 4.3E-06 9.4E-11 92.7 3.4 94 723-822 124-225 (322)
185 PLN02672 methionine S-methyltr 97.9 3.1E-05 6.7E-10 97.3 10.8 101 468-568 119-277 (1082)
186 PLN02476 O-methyltransferase 97.9 4.4E-05 9.5E-10 83.3 10.1 101 467-572 118-231 (278)
187 PRK00517 prmA ribosomal protei 97.9 1.9E-05 4.1E-10 84.3 7.0 123 723-858 121-249 (250)
188 COG4122 Predicted O-methyltran 97.9 6E-05 1.3E-09 79.6 10.2 99 467-570 59-167 (219)
189 PRK08287 cobalt-precorrin-6Y C 97.9 1.3E-05 2.7E-10 81.5 5.0 111 723-842 33-151 (187)
190 PRK00121 trmB tRNA (guanine-N( 97.9 9.6E-06 2.1E-10 84.0 3.8 121 722-844 41-178 (202)
191 TIGR00406 prmA ribosomal prote 97.9 1.6E-05 3.5E-10 86.7 5.6 113 723-844 161-280 (288)
192 KOG1499 Protein arginine N-met 97.9 4.6E-05 1E-09 84.7 8.9 97 467-566 60-164 (346)
193 PF01209 Ubie_methyltran: ubiE 97.8 6.2E-06 1.3E-10 87.7 2.0 96 724-823 50-153 (233)
194 PF01596 Methyltransf_3: O-met 97.8 7.9E-05 1.7E-09 78.0 10.0 101 467-572 45-158 (205)
195 PF10294 Methyltransf_16: Puta 97.8 0.00011 2.4E-09 74.5 10.8 121 446-569 22-156 (173)
196 PRK01683 trans-aconitate 2-met 97.8 2.1E-05 4.6E-10 83.5 5.7 116 721-842 31-153 (258)
197 TIGR00740 methyltransferase, p 97.8 6.4E-06 1.4E-10 86.8 1.7 97 723-825 55-163 (239)
198 TIGR02072 BioC biotin biosynth 97.8 9.8E-06 2.1E-10 83.5 2.9 97 723-823 36-135 (240)
199 PF12147 Methyltransf_20: Puta 97.8 0.00044 9.5E-09 75.6 15.4 156 454-611 122-292 (311)
200 PF05185 PRMT5: PRMT5 arginine 97.8 0.00011 2.4E-09 85.2 11.6 115 450-566 165-294 (448)
201 PRK08317 hypothetical protein; 97.8 1.1E-05 2.4E-10 82.9 3.0 97 723-823 21-124 (241)
202 PF08704 GCD14: tRNA methyltra 97.8 0.0002 4.3E-09 77.1 12.6 99 465-570 38-147 (247)
203 PRK12335 tellurite resistance 97.8 6.7E-06 1.4E-10 89.5 1.4 115 723-845 122-257 (287)
204 PRK15451 tRNA cmo(5)U34 methyl 97.8 1.1E-05 2.3E-10 85.9 2.9 99 723-824 58-165 (247)
205 PRK11705 cyclopropane fatty ac 97.8 9.6E-06 2.1E-10 92.1 2.7 95 723-823 169-267 (383)
206 PRK00274 ksgA 16S ribosomal RN 97.8 0.00013 2.9E-09 79.0 11.0 70 466-538 41-112 (272)
207 PRK14896 ksgA 16S ribosomal RN 97.8 0.00017 3.7E-09 77.6 11.3 69 466-539 28-99 (258)
208 PRK14968 putative methyltransf 97.8 4.2E-05 9E-10 76.5 6.2 118 722-844 24-170 (188)
209 COG1352 CheR Methylase of chem 97.7 0.00024 5.1E-09 77.3 12.0 128 441-568 68-240 (268)
210 PRK11088 rrmA 23S rRNA methylt 97.7 1.6E-05 3.5E-10 85.7 2.9 92 723-825 87-183 (272)
211 TIGR00452 methyltransferase, p 97.7 1.8E-05 4E-10 87.7 3.4 94 723-822 123-224 (314)
212 KOG1331 Predicted methyltransf 97.7 2.3E-05 5E-10 85.0 3.9 99 467-572 45-146 (293)
213 TIGR00438 rrmJ cell division p 97.7 5.1E-05 1.1E-09 77.3 6.1 127 723-857 34-186 (188)
214 TIGR00755 ksgA dimethyladenosi 97.7 0.00025 5.4E-09 75.9 11.4 69 466-538 28-101 (253)
215 KOG3987 Uncharacterized conser 97.7 2.4E-05 5.1E-10 81.4 3.2 120 437-568 84-206 (288)
216 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00019 4.2E-09 81.7 10.6 98 468-571 58-160 (382)
217 COG0421 SpeE Spermidine syntha 97.7 0.00043 9.3E-09 75.9 12.9 109 456-568 66-189 (282)
218 PF08242 Methyltransf_12: Meth 97.7 2.3E-05 5E-10 71.0 2.6 91 726-819 1-99 (99)
219 PRK11188 rrmJ 23S rRNA methylt 97.7 2.5E-05 5.4E-10 81.6 3.2 128 723-858 53-206 (209)
220 PF02527 GidB: rRNA small subu 97.7 0.00059 1.3E-08 70.4 12.8 92 470-568 51-147 (184)
221 PLN02823 spermine synthase 97.6 0.00041 8.9E-09 77.8 12.5 101 467-568 103-219 (336)
222 COG4976 Predicted methyltransf 97.6 1.5E-05 3.2E-10 84.1 0.9 123 717-845 121-263 (287)
223 PF01170 UPF0020: Putative RNA 97.6 0.00048 1E-08 70.4 11.4 110 455-568 16-150 (179)
224 PTZ00338 dimethyladenosine tra 97.6 0.00039 8.4E-09 76.6 11.4 71 466-538 35-108 (294)
225 PRK00377 cbiT cobalt-precorrin 97.6 6.1E-05 1.3E-09 77.5 4.7 116 724-845 43-168 (198)
226 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00018 4E-09 77.3 8.3 100 467-571 79-192 (247)
227 PRK05785 hypothetical protein; 97.6 3.8E-05 8.3E-10 81.1 2.8 86 723-817 53-141 (226)
228 TIGR01934 MenG_MenH_UbiE ubiqu 97.6 4.9E-05 1.1E-09 77.8 3.5 98 722-823 40-143 (223)
229 PRK11873 arsM arsenite S-adeno 97.6 4.1E-05 8.9E-10 82.1 3.0 95 723-823 79-183 (272)
230 TIGR03534 RF_mod_PrmC protein- 97.6 7.7E-05 1.7E-09 78.3 4.9 116 723-843 89-237 (251)
231 COG2521 Predicted archaeal met 97.5 0.00014 3E-09 77.2 6.2 102 466-568 133-244 (287)
232 PRK11933 yebU rRNA (cytosine-C 97.5 0.00051 1.1E-08 80.2 11.6 104 466-570 112-243 (470)
233 PF07942 N2227: N2227-like pro 97.5 0.00042 9.1E-09 75.5 9.9 155 452-617 41-242 (270)
234 PRK04148 hypothetical protein; 97.5 0.00059 1.3E-08 67.1 9.9 94 467-574 16-113 (134)
235 PF13847 Methyltransf_31: Meth 97.5 3.5E-05 7.5E-10 75.6 1.3 96 723-825 5-112 (152)
236 TIGR00095 RNA methyltransferas 97.5 0.0021 4.4E-08 66.4 14.3 98 467-568 49-158 (189)
237 PRK00536 speE spermidine synth 97.5 0.0013 2.8E-08 71.5 13.2 109 451-569 58-171 (262)
238 PF05401 NodS: Nodulation prot 97.5 1.5E-05 3.3E-10 82.6 -1.5 135 717-857 39-193 (201)
239 PRK05134 bifunctional 3-demeth 97.5 6.5E-05 1.4E-09 78.5 3.1 95 724-824 51-152 (233)
240 TIGR00091 tRNA (guanine-N(7)-) 97.5 0.00012 2.6E-09 75.3 4.5 118 723-842 18-153 (194)
241 PRK05031 tRNA (uracil-5-)-meth 97.4 0.0011 2.3E-08 75.0 12.5 94 469-569 208-320 (362)
242 PRK09328 N5-glutamine S-adenos 97.4 0.00018 3.9E-09 76.9 5.9 132 723-858 110-275 (275)
243 PF01564 Spermine_synth: Sperm 97.4 0.0014 3E-08 70.5 12.5 118 449-569 60-191 (246)
244 TIGR01983 UbiG ubiquinone bios 97.4 8.3E-05 1.8E-09 76.9 3.0 96 723-824 47-150 (224)
245 PLN02490 MPBQ/MSBQ methyltrans 97.4 0.00016 3.4E-09 81.2 5.1 117 723-844 115-253 (340)
246 PRK09489 rsmC 16S ribosomal RN 97.4 0.0002 4.3E-09 80.4 5.8 129 724-859 199-337 (342)
247 COG2263 Predicted RNA methylas 97.4 0.00048 1E-08 71.2 8.0 69 467-539 45-116 (198)
248 PRK04266 fibrillarin; Provisio 97.4 0.00036 7.9E-09 74.0 7.1 129 724-859 75-226 (226)
249 PF03848 TehB: Tellurite resis 97.3 7.1E-05 1.5E-09 77.6 1.4 115 723-845 32-167 (192)
250 smart00138 MeTrc Methyltransfe 97.3 8E-05 1.7E-09 80.5 1.7 99 723-825 101-244 (264)
251 cd02440 AdoMet_MTases S-adenos 97.3 0.00015 3.2E-09 62.8 2.8 95 724-822 1-103 (107)
252 PRK06922 hypothetical protein; 97.3 0.00011 2.3E-09 88.0 2.5 102 721-824 418-538 (677)
253 TIGR00536 hemK_fam HemK family 97.3 0.00034 7.4E-09 76.2 6.1 133 723-859 116-283 (284)
254 PRK11805 N5-glutamine S-adenos 97.3 0.00025 5.4E-09 78.4 5.1 130 723-858 135-296 (307)
255 PTZ00146 fibrillarin; Provisio 97.3 0.00052 1.1E-08 75.5 7.4 93 724-822 135-236 (293)
256 TIGR03533 L3_gln_methyl protei 97.3 0.00026 5.7E-09 77.3 4.7 115 723-843 123-270 (284)
257 PF02475 Met_10: Met-10+ like- 97.3 0.0013 2.8E-08 68.8 9.5 121 434-567 74-200 (200)
258 TIGR02143 trmA_only tRNA (urac 97.2 0.0016 3.4E-08 73.5 10.9 94 469-569 199-311 (353)
259 COG2813 RsmC 16S RNA G1207 met 97.2 0.0092 2E-07 65.9 16.2 128 724-858 161-299 (300)
260 PRK00216 ubiE ubiquinone/menaq 97.2 0.00021 4.5E-09 74.0 3.2 98 723-823 53-158 (239)
261 PRK14967 putative methyltransf 97.2 0.00043 9.4E-09 72.5 5.6 117 723-844 38-181 (223)
262 PRK14966 unknown domain/N5-glu 97.2 0.00055 1.2E-08 78.6 6.8 133 724-858 254-418 (423)
263 PRK14121 tRNA (guanine-N(7)-)- 97.2 0.0003 6.6E-09 80.1 4.7 116 723-842 124-256 (390)
264 KOG3178 Hydroxyindole-O-methyl 97.2 0.0018 4E-08 72.3 10.4 94 468-570 178-276 (342)
265 COG3963 Phospholipid N-methylt 97.2 0.0013 2.9E-08 66.8 8.0 98 466-568 47-155 (194)
266 PRK06202 hypothetical protein; 97.1 0.00023 4.9E-09 74.8 2.5 99 721-823 60-166 (232)
267 TIGR02716 C20_methyl_CrtF C-20 97.1 0.00019 4.1E-09 78.6 1.8 102 719-824 147-255 (306)
268 PRK13942 protein-L-isoaspartat 97.1 0.0002 4.3E-09 74.9 1.9 85 723-822 78-175 (212)
269 COG2230 Cfa Cyclopropane fatty 97.1 0.00026 5.6E-09 77.4 2.7 105 715-822 68-175 (283)
270 PF13649 Methyltransf_25: Meth 97.1 6.7E-05 1.5E-09 68.5 -1.7 92 725-817 1-101 (101)
271 PF11968 DUF3321: Putative met 97.1 0.002 4.3E-08 68.0 8.9 104 449-568 33-148 (219)
272 TIGR02469 CbiT precorrin-6Y C5 97.1 0.00021 4.5E-09 66.3 1.5 92 723-822 21-121 (124)
273 KOG2352 Predicted spermine/spe 97.1 0.0034 7.4E-08 72.7 11.3 97 470-568 51-160 (482)
274 TIGR03439 methyl_EasF probable 97.1 0.0078 1.7E-07 67.2 13.9 117 467-585 76-212 (319)
275 PRK13944 protein-L-isoaspartat 97.1 0.00024 5.3E-09 73.7 1.9 91 723-823 74-173 (205)
276 PF01728 FtsJ: FtsJ-like methy 97.1 0.0026 5.7E-08 64.2 9.4 90 467-569 23-139 (181)
277 PF05175 MTS: Methyltransferas 97.1 0.00051 1.1E-08 69.2 4.2 111 722-836 32-155 (170)
278 TIGR02081 metW methionine bios 97.0 0.00031 6.8E-09 71.9 2.2 86 724-815 16-104 (194)
279 TIGR00080 pimt protein-L-isoas 97.0 0.00025 5.4E-09 73.9 1.5 86 723-822 79-176 (215)
280 COG2265 TrmA SAM-dependent met 97.0 0.0065 1.4E-07 70.5 12.4 120 443-568 269-395 (432)
281 KOG1500 Protein arginine N-met 97.0 0.0021 4.6E-08 71.1 7.9 99 467-568 177-281 (517)
282 COG0293 FtsJ 23S rRNA methylas 97.0 0.0073 1.6E-07 63.5 11.6 92 466-569 44-159 (205)
283 TIGR03704 PrmC_rel_meth putati 97.0 0.00068 1.5E-08 72.9 4.1 124 723-849 88-242 (251)
284 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0024 5.2E-08 69.9 8.5 106 464-570 43-184 (311)
285 PF03602 Cons_hypoth95: Conser 96.9 0.0051 1.1E-07 63.3 10.0 98 467-568 42-152 (183)
286 TIGR03587 Pse_Me-ase pseudamin 96.9 0.00051 1.1E-08 71.6 2.7 94 722-823 44-142 (204)
287 PRK07580 Mg-protoporphyrin IX 96.9 0.0007 1.5E-08 70.2 3.7 98 722-823 64-166 (230)
288 KOG3191 Predicted N6-DNA-methy 96.9 0.013 2.9E-07 60.4 12.5 114 452-568 29-167 (209)
289 PF07021 MetW: Methionine bios 96.9 0.00053 1.1E-08 71.1 2.6 90 724-822 16-108 (193)
290 PF09243 Rsm22: Mitochondrial 96.9 0.0088 1.9E-07 65.3 12.1 96 466-568 32-138 (274)
291 PRK07402 precorrin-6B methylas 96.9 0.00086 1.9E-08 68.7 4.1 108 723-839 42-159 (196)
292 PF13679 Methyltransf_32: Meth 96.9 0.011 2.3E-07 58.1 11.5 116 451-575 9-137 (141)
293 KOG3010 Methyltransferase [Gen 96.9 0.00058 1.3E-08 72.8 2.7 136 698-841 10-158 (261)
294 TIGR02021 BchM-ChlM magnesium 96.9 0.00092 2E-08 69.5 4.1 96 722-824 56-159 (219)
295 KOG1661 Protein-L-isoaspartate 96.8 0.0053 1.2E-07 64.5 9.5 96 466-568 81-192 (237)
296 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0062 1.3E-07 69.4 10.7 97 469-571 46-149 (374)
297 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.8 0.0045 9.7E-08 67.1 8.8 141 466-614 55-236 (256)
298 COG1092 Predicted SAM-dependen 96.8 0.007 1.5E-07 69.3 10.5 111 467-578 217-345 (393)
299 COG2264 PrmA Ribosomal protein 96.8 0.0026 5.6E-08 70.3 6.7 126 721-855 162-295 (300)
300 KOG1663 O-methyltransferase [S 96.7 0.011 2.4E-07 63.0 10.9 97 467-568 73-182 (237)
301 PF01728 FtsJ: FtsJ-like methy 96.7 0.0019 4E-08 65.3 4.9 137 720-858 22-180 (181)
302 COG0144 Sun tRNA and rRNA cyto 96.7 0.014 2.9E-07 66.1 12.3 109 462-571 151-290 (355)
303 COG2227 UbiG 2-polyprenyl-3-me 96.7 0.00085 1.8E-08 71.6 2.3 94 724-824 62-162 (243)
304 COG0357 GidB Predicted S-adeno 96.7 0.014 3.1E-07 61.7 11.3 133 425-567 28-166 (215)
305 KOG3420 Predicted RNA methylas 96.7 0.0032 6.8E-08 62.8 5.8 72 467-539 48-122 (185)
306 COG0030 KsgA Dimethyladenosine 96.7 0.014 3E-07 63.4 11.2 86 466-556 29-117 (259)
307 PF06325 PrmA: Ribosomal prote 96.6 0.0011 2.3E-08 73.3 2.7 128 723-859 163-295 (295)
308 COG2890 HemK Methylase of poly 96.6 0.0045 9.8E-08 67.8 7.0 130 724-858 113-276 (280)
309 COG4262 Predicted spermidine s 96.6 0.017 3.8E-07 64.9 11.4 135 431-570 253-408 (508)
310 PRK04457 spermidine synthase; 96.6 0.0046 9.9E-08 67.0 6.9 133 721-858 66-216 (262)
311 TIGR03840 TMPT_Se_Te thiopurin 96.5 0.0017 3.7E-08 68.3 3.2 118 723-845 36-185 (213)
312 TIGR03438 probable methyltrans 96.5 0.0012 2.6E-08 72.6 2.2 98 723-822 65-176 (301)
313 PF01269 Fibrillarin: Fibrilla 96.5 0.013 2.9E-07 62.2 9.7 97 466-568 72-177 (229)
314 PRK00312 pcm protein-L-isoaspa 96.5 0.0017 3.8E-08 67.2 3.2 86 723-822 80-174 (212)
315 PF10672 Methyltrans_SAM: S-ad 96.5 0.0081 1.8E-07 66.1 8.3 103 467-570 123-239 (286)
316 PRK13255 thiopurine S-methyltr 96.5 0.0019 4.2E-08 68.2 3.3 117 724-845 40-188 (218)
317 PF00891 Methyltransf_2: O-met 96.5 0.00072 1.6E-08 71.3 -0.1 99 716-824 95-200 (241)
318 TIGR01177 conserved hypothetic 96.5 0.003 6.5E-08 70.3 4.8 115 723-843 184-311 (329)
319 KOG1540 Ubiquinone biosynthesi 96.4 0.0022 4.9E-08 69.0 3.4 107 723-837 102-229 (296)
320 PF05219 DREV: DREV methyltran 96.3 0.0031 6.6E-08 68.3 3.7 90 722-822 95-187 (265)
321 PF02390 Methyltransf_4: Putat 96.3 0.0016 3.4E-08 67.7 1.2 115 724-843 20-156 (195)
322 PF05958 tRNA_U5-meth_tr: tRNA 96.2 0.016 3.4E-07 65.5 9.0 51 469-520 198-250 (352)
323 KOG1709 Guanidinoacetate methy 96.2 0.039 8.4E-07 58.5 10.8 97 466-568 100-205 (271)
324 PRK11760 putative 23S rRNA C24 96.2 0.031 6.6E-07 63.0 10.8 89 466-568 210-304 (357)
325 TIGR02987 met_A_Alw26 type II 96.1 0.025 5.4E-07 66.9 10.2 73 467-539 31-120 (524)
326 COG0742 N6-adenine-specific me 96.1 0.039 8.5E-07 57.3 10.2 99 466-568 42-153 (187)
327 COG0500 SmtA SAM-dependent met 96.1 0.011 2.4E-07 52.3 5.4 94 725-825 52-157 (257)
328 TIGR00563 rsmB ribosomal RNA s 96.1 0.0053 1.1E-07 70.8 4.3 113 723-837 240-386 (426)
329 KOG0820 Ribosomal RNA adenine 96.0 0.038 8.2E-07 60.3 10.0 69 465-538 56-130 (315)
330 PF05148 Methyltransf_8: Hypot 96.0 0.021 4.6E-07 60.3 7.9 119 724-860 75-199 (219)
331 PLN02781 Probable caffeoyl-CoA 95.9 0.0038 8.3E-08 66.5 2.1 132 720-859 67-233 (234)
332 PRK00050 16S rRNA m(4)C1402 me 95.9 0.014 2.9E-07 64.7 6.4 41 466-506 18-63 (296)
333 COG2520 Predicted methyltransf 95.9 0.047 1E-06 61.5 10.4 117 440-568 167-288 (341)
334 PRK14902 16S rRNA methyltransf 95.9 0.0089 1.9E-07 69.3 4.9 118 723-842 252-403 (444)
335 PF08123 DOT1: Histone methyla 95.8 0.062 1.3E-06 56.6 10.3 100 466-567 41-156 (205)
336 PRK00811 spermidine synthase; 95.7 0.0078 1.7E-07 65.9 3.5 100 721-822 76-190 (283)
337 COG4123 Predicted O-methyltran 95.7 0.014 3.1E-07 62.9 5.5 123 722-845 45-192 (248)
338 COG3897 Predicted methyltransf 95.6 0.04 8.8E-07 57.6 8.1 106 467-578 79-187 (218)
339 PRK11783 rlmL 23S rRNA m(2)G24 95.6 0.075 1.6E-06 65.3 11.6 118 723-845 540-678 (702)
340 TIGR00417 speE spermidine synt 95.5 0.026 5.6E-07 61.3 6.6 136 721-858 72-232 (270)
341 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.5 0.03 6.6E-07 61.4 7.1 106 465-571 83-221 (283)
342 PF13659 Methyltransf_26: Meth 95.4 0.0019 4.2E-08 59.8 -2.1 97 724-822 3-114 (117)
343 TIGR00446 nop2p NOL1/NOP2/sun 95.4 0.012 2.7E-07 63.6 3.7 96 724-822 74-198 (264)
344 PF08003 Methyltransf_9: Prote 95.4 0.011 2.4E-07 65.5 3.2 116 723-843 117-263 (315)
345 COG0116 Predicted N6-adenine-s 95.4 0.11 2.3E-06 59.4 11.1 114 452-569 176-344 (381)
346 PF09445 Methyltransf_15: RNA 95.4 0.038 8.3E-07 56.2 6.8 68 469-538 1-76 (163)
347 TIGR00478 tly hemolysin TlyA f 95.4 0.021 4.4E-07 61.1 5.1 107 723-844 77-214 (228)
348 KOG3045 Predicted RNA methylas 95.3 0.058 1.3E-06 58.6 8.2 117 724-858 183-303 (325)
349 PRK14901 16S rRNA methyltransf 95.3 0.022 4.7E-07 66.0 5.5 116 724-842 255-408 (434)
350 KOG2187 tRNA uracil-5-methyltr 95.3 0.026 5.7E-07 66.0 5.8 91 431-524 349-442 (534)
351 PRK10901 16S rRNA methyltransf 95.2 0.015 3.3E-07 67.1 3.8 114 723-837 246-390 (427)
352 PF03492 Methyltransf_7: SAM d 95.1 0.096 2.1E-06 58.9 9.4 78 467-545 16-120 (334)
353 PRK01581 speE spermidine synth 95.0 0.049 1.1E-06 62.0 6.9 140 721-862 150-317 (374)
354 PRK14904 16S rRNA methyltransf 94.9 0.026 5.5E-07 65.6 4.5 111 723-837 252-395 (445)
355 PRK14903 16S rRNA methyltransf 94.9 0.018 3.9E-07 66.7 3.3 110 723-836 239-383 (431)
356 COG4627 Uncharacterized protei 94.9 0.007 1.5E-07 61.0 -0.2 50 523-572 39-89 (185)
357 PLN02668 indole-3-acetate carb 94.9 0.16 3.5E-06 58.3 10.6 77 468-546 64-176 (386)
358 PLN02232 ubiquinone biosynthes 94.8 0.021 4.6E-07 57.1 3.2 55 767-824 28-82 (160)
359 COG4798 Predicted methyltransf 94.8 0.19 4.2E-06 52.7 10.0 136 465-614 46-202 (238)
360 PF04672 Methyltransf_19: S-ad 94.8 0.27 5.9E-06 53.8 11.7 121 453-577 54-197 (267)
361 COG1189 Predicted rRNA methyla 94.7 0.18 3.9E-06 54.2 9.7 113 445-572 61-181 (245)
362 PRK13943 protein-L-isoaspartat 94.6 0.017 3.6E-07 64.7 2.1 88 723-823 82-180 (322)
363 PF00398 RrnaAD: Ribosomal RNA 94.6 0.15 3.3E-06 55.1 9.3 95 467-568 30-133 (262)
364 COG0220 Predicted S-adenosylme 94.5 0.028 6E-07 60.1 3.3 110 724-837 51-180 (227)
365 COG1889 NOP1 Fibrillarin-like 94.5 0.26 5.6E-06 52.0 10.0 97 466-568 75-179 (231)
366 PRK15128 23S rRNA m(5)C1962 me 94.4 0.032 6.9E-07 64.1 3.8 121 723-845 222-367 (396)
367 KOG1271 Methyltransferases [Ge 94.3 0.045 9.7E-07 56.8 4.1 117 724-842 70-200 (227)
368 PF05971 Methyltransf_10: Prot 94.3 0.23 4.9E-06 55.3 9.8 104 447-553 81-196 (299)
369 KOG2361 Predicted methyltransf 94.2 0.038 8.3E-07 59.3 3.5 96 724-823 74-183 (264)
370 KOG4300 Predicted methyltransf 94.2 0.029 6.2E-07 59.1 2.5 94 724-825 79-184 (252)
371 PLN02585 magnesium protoporphy 94.2 0.039 8.5E-07 61.6 3.7 93 723-820 146-247 (315)
372 PLN03075 nicotianamine synthas 94.2 0.059 1.3E-06 59.8 5.0 135 721-860 123-276 (296)
373 KOG2915 tRNA(1-methyladenosine 94.2 0.45 9.7E-06 52.3 11.4 97 465-568 103-208 (314)
374 KOG2798 Putative trehalase [Ca 93.9 0.18 3.9E-06 56.1 7.9 122 450-574 133-301 (369)
375 KOG3201 Uncharacterized conser 93.8 0.053 1.2E-06 55.2 3.5 101 467-570 29-141 (201)
376 PLN02366 spermidine synthase 93.6 0.035 7.6E-07 61.8 2.0 100 721-822 91-205 (308)
377 COG4106 Tam Trans-aconitate me 93.6 0.13 2.8E-06 54.7 6.0 118 717-844 26-154 (257)
378 KOG1270 Methyltransferases [Co 93.6 0.038 8.2E-07 60.1 2.1 93 723-824 91-196 (282)
379 TIGR01444 fkbM_fam methyltrans 93.5 0.15 3.2E-06 49.1 5.9 44 470-514 1-48 (143)
380 PF13578 Methyltransf_24: Meth 93.5 0.037 8E-07 51.0 1.6 93 472-568 1-104 (106)
381 COG5459 Predicted rRNA methyla 93.5 0.23 5E-06 56.0 8.0 111 453-568 103-224 (484)
382 PRK03612 spermidine synthase; 93.3 0.094 2E-06 62.3 5.1 120 721-842 297-439 (521)
383 PHA03411 putative methyltransf 93.3 0.054 1.2E-06 59.5 2.8 116 723-842 66-209 (279)
384 COG1064 AdhP Zn-dependent alco 93.3 0.3 6.4E-06 55.2 8.5 93 466-571 165-261 (339)
385 KOG1541 Predicted protein carb 93.1 0.11 2.5E-06 55.3 4.7 118 721-842 50-179 (270)
386 PF01861 DUF43: Protein of unk 92.9 2.5 5.4E-05 45.9 14.3 97 467-568 44-148 (243)
387 COG3129 Predicted SAM-dependen 92.8 0.47 1E-05 51.1 8.6 124 433-559 41-178 (292)
388 KOG1122 tRNA and rRNA cytosine 92.7 1 2.2E-05 52.1 11.6 107 465-573 239-375 (460)
389 PF04816 DUF633: Family of unk 92.4 0.63 1.4E-05 49.1 9.1 94 471-568 1-100 (205)
390 PF06962 rRNA_methylase: Putat 92.2 0.68 1.5E-05 46.2 8.5 88 489-576 1-99 (140)
391 PF06080 DUF938: Protein of un 92.0 0.21 4.5E-06 52.7 4.9 132 724-858 28-204 (204)
392 PHA03412 putative methyltransf 91.9 0.097 2.1E-06 56.4 2.4 95 723-822 51-161 (241)
393 PF03059 NAS: Nicotianamine sy 91.5 2.5 5.5E-05 46.7 12.8 119 449-569 100-230 (276)
394 KOG0822 Protein kinase inhibit 91.2 0.76 1.6E-05 54.4 8.7 100 468-568 368-477 (649)
395 PLN02476 O-methyltransferase 91.1 0.18 3.9E-06 55.6 3.5 134 718-859 115-278 (278)
396 PF10294 Methyltransf_16: Puta 90.9 0.12 2.5E-06 52.7 1.7 98 721-824 45-157 (173)
397 COG2521 Predicted archaeal met 90.9 0.38 8.3E-06 51.8 5.5 131 723-859 136-287 (287)
398 PF01596 Methyltransf_3: O-met 90.7 0.087 1.9E-06 55.4 0.5 134 718-859 42-205 (205)
399 COG4076 Predicted RNA methylas 90.5 0.32 6.9E-06 50.9 4.4 91 469-566 34-132 (252)
400 PRK13168 rumA 23S rRNA m(5)U19 90.4 0.3 6.4E-06 56.9 4.6 112 723-844 299-421 (443)
401 smart00650 rADc Ribosomal RNA 90.3 0.14 3E-06 51.4 1.6 94 722-823 14-113 (169)
402 KOG3115 Methyltransferase-like 90.2 0.78 1.7E-05 48.6 7.0 31 468-498 61-95 (249)
403 PRK04148 hypothetical protein; 90.1 0.14 3.1E-06 50.6 1.5 89 723-845 18-108 (134)
404 KOG4589 Cell division protein 89.8 2.1 4.7E-05 44.9 9.6 93 466-569 68-184 (232)
405 PF06859 Bin3: Bicoid-interact 89.7 0.12 2.6E-06 49.4 0.6 37 531-568 1-43 (110)
406 COG2242 CobL Precorrin-6B meth 89.1 2.2 4.7E-05 44.6 9.2 117 715-843 30-157 (187)
407 KOG1596 Fibrillarin and relate 88.5 1.5 3.2E-05 47.6 7.6 98 465-568 154-260 (317)
408 COG1063 Tdh Threonine dehydrog 88.4 3.3 7.1E-05 46.8 10.9 96 467-574 168-274 (350)
409 KOG2940 Predicted methyltransf 88.2 0.23 4.9E-06 53.3 1.4 97 721-822 72-173 (325)
410 COG2384 Predicted SAM-dependen 87.8 2.4 5.2E-05 45.4 8.6 108 452-568 7-119 (226)
411 PF05185 PRMT5: PRMT5 arginine 87.6 0.36 7.7E-06 56.6 2.7 95 723-822 188-296 (448)
412 PRK09424 pntA NAD(P) transhydr 87.2 2.9 6.3E-05 49.9 9.9 99 466-570 163-286 (509)
413 TIGR00479 rumA 23S rRNA (uraci 87.1 0.51 1.1E-05 54.5 3.6 112 723-844 294-417 (431)
414 COG4627 Uncharacterized protei 87.0 0.3 6.5E-06 49.6 1.4 45 778-823 41-86 (185)
415 KOG1269 SAM-dependent methyltr 86.9 0.39 8.3E-06 54.9 2.4 93 724-822 113-214 (364)
416 PF01135 PCMT: Protein-L-isoas 86.9 0.12 2.5E-06 54.7 -1.7 87 724-822 75-171 (209)
417 KOG2198 tRNA cytosine-5-methyl 86.6 4.2 9.1E-05 46.5 10.2 120 451-571 138-298 (375)
418 PRK10909 rsmD 16S rRNA m(2)G96 85.8 0.27 5.9E-06 51.5 0.4 125 724-858 56-190 (199)
419 PRK03522 rumB 23S rRNA methylu 85.6 1.1 2.3E-05 49.9 5.0 111 723-844 175-293 (315)
420 KOG2904 Predicted methyltransf 85.6 1.4 3.1E-05 48.5 5.7 135 724-858 151-327 (328)
421 PRK11760 putative 23S rRNA C24 85.6 2.9 6.3E-05 47.6 8.3 123 723-855 213-351 (357)
422 PRK09880 L-idonate 5-dehydroge 85.6 3.5 7.6E-05 45.7 9.0 91 467-569 169-266 (343)
423 PF03291 Pox_MCEL: mRNA cappin 85.5 0.32 6.9E-06 54.8 0.8 131 696-833 37-198 (331)
424 PF02527 GidB: rRNA small subu 85.3 0.83 1.8E-05 47.4 3.6 111 724-845 51-173 (184)
425 PLN02672 methionine S-methyltr 85.2 0.92 2E-05 58.3 4.7 41 803-843 258-299 (1082)
426 PRK00536 speE spermidine synth 85.1 0.79 1.7E-05 50.2 3.6 91 720-823 71-171 (262)
427 PF05891 Methyltransf_PK: AdoM 85.0 0.25 5.4E-06 52.6 -0.3 123 721-845 55-199 (218)
428 PF07091 FmrO: Ribosomal RNA m 84.9 2.5 5.4E-05 46.1 7.1 70 467-538 105-178 (251)
429 KOG3115 Methyltransferase-like 84.6 1.3 2.9E-05 46.9 4.8 34 804-837 164-198 (249)
430 COG4122 Predicted O-methyltran 84.6 0.8 1.7E-05 48.9 3.2 136 718-859 56-218 (219)
431 cd08254 hydroxyacyl_CoA_DH 6-h 84.5 3.7 8E-05 44.5 8.4 92 466-569 164-263 (338)
432 COG0421 SpeE Spermidine syntha 84.4 0.69 1.5E-05 51.1 2.8 114 717-841 72-213 (282)
433 COG4301 Uncharacterized conser 84.0 9.9 0.00021 41.7 11.0 102 467-569 78-193 (321)
434 cd08283 FDH_like_1 Glutathione 83.9 4.4 9.6E-05 45.8 9.1 97 466-569 183-306 (386)
435 KOG2539 Mitochondrial/chloropl 83.9 3 6.5E-05 49.0 7.6 102 467-568 200-314 (491)
436 KOG2920 Predicted methyltransf 82.9 0.58 1.3E-05 51.5 1.4 58 440-498 90-150 (282)
437 PF03269 DUF268: Caenorhabditi 82.5 1.1 2.4E-05 45.9 3.1 47 529-576 61-118 (177)
438 PRK11933 yebU rRNA (cytosine-C 82.3 1.3 2.9E-05 52.2 4.2 99 724-822 116-241 (470)
439 KOG1331 Predicted methyltransf 82.3 0.91 2E-05 50.2 2.6 41 782-822 102-142 (293)
440 COG2519 GCD14 tRNA(1-methylade 82.0 2.2 4.7E-05 46.6 5.2 114 716-841 91-214 (256)
441 PF07757 AdoMet_MTase: Predict 81.5 1.7 3.7E-05 41.8 3.8 30 466-495 57-86 (112)
442 PRK10742 putative methyltransf 81.3 9.5 0.00021 41.7 9.8 32 470-501 91-124 (250)
443 PF01269 Fibrillarin: Fibrilla 80.8 1.8 3.9E-05 46.5 4.1 115 724-843 76-208 (229)
444 KOG0024 Sorbitol dehydrogenase 80.3 7.9 0.00017 43.8 8.9 93 465-569 167-273 (354)
445 PRK10611 chemotaxis methyltran 80.2 1.1 2.4E-05 49.7 2.4 44 781-825 221-264 (287)
446 KOG1099 SAM-dependent methyltr 80.1 2.5 5.3E-05 45.7 4.8 89 468-568 42-162 (294)
447 PF01739 CheR: CheR methyltran 78.5 0.8 1.7E-05 48.0 0.6 55 769-825 123-177 (196)
448 PF12147 Methyltransf_20: Puta 78.4 1.4 3E-05 49.1 2.4 122 724-845 138-277 (311)
449 COG0286 HsdM Type I restrictio 78.3 21 0.00045 42.5 12.3 102 466-568 185-325 (489)
450 PF08704 GCD14: tRNA methyltra 78.3 1.4 3.1E-05 47.8 2.5 118 716-843 37-167 (247)
451 KOG1227 Putative methyltransfe 77.9 1.4 3.1E-05 49.1 2.3 132 423-566 154-293 (351)
452 PLN02823 spermine synthase 77.9 4.8 0.0001 45.7 6.6 100 721-822 103-219 (336)
453 COG1189 Predicted rRNA methyla 77.6 7.2 0.00016 42.4 7.4 115 723-845 81-222 (245)
454 PRK11524 putative methyltransf 77.5 3 6.5E-05 45.7 4.7 43 526-568 22-79 (284)
455 PRK13699 putative methylase; P 77.4 4.9 0.00011 43.0 6.1 57 803-859 52-121 (227)
456 PF13578 Methyltransf_24: Meth 77.2 0.7 1.5E-05 42.5 -0.2 94 726-823 1-105 (106)
457 TIGR02085 meth_trns_rumB 23S r 77.1 2.6 5.5E-05 48.2 4.2 110 723-844 235-353 (374)
458 PRK01747 mnmC bifunctional tRN 76.2 13 0.00028 45.5 10.2 57 530-614 165-224 (662)
459 PF04989 CmcI: Cephalosporin h 76.0 11 0.00024 40.1 8.2 97 467-569 32-147 (206)
460 PF01564 Spermine_synth: Sperm 75.4 3.8 8.3E-05 44.2 4.8 138 721-860 76-239 (246)
461 KOG2793 Putative N2,N2-dimethy 74.4 14 0.00031 40.3 8.7 100 468-568 87-198 (248)
462 cd08230 glucose_DH Glucose deh 73.9 14 0.00031 41.1 8.9 93 467-570 172-270 (355)
463 TIGR02822 adh_fam_2 zinc-bindi 73.5 18 0.00039 40.1 9.6 87 466-569 164-254 (329)
464 PTZ00357 methyltransferase; Pr 73.4 18 0.00038 44.7 9.8 96 469-565 702-831 (1072)
465 KOG2730 Methylase [General fun 73.0 6.1 0.00013 42.6 5.4 70 468-538 95-172 (263)
466 PF10354 DUF2431: Domain of un 71.7 19 0.00042 36.8 8.5 92 474-569 3-125 (166)
467 PF02005 TRM: N2,N2-dimethylgu 70.8 18 0.00039 41.8 8.9 98 468-571 50-156 (377)
468 PRK14896 ksgA 16S ribosomal RN 70.8 1.6 3.4E-05 47.2 0.5 38 723-763 31-69 (258)
469 TIGR00561 pntA NAD(P) transhyd 70.6 8.9 0.00019 45.9 6.6 94 467-566 163-281 (511)
470 COG2518 Pcm Protein-L-isoaspar 70.5 2.1 4.5E-05 45.6 1.2 86 723-822 74-168 (209)
471 PRK13256 thiopurine S-methyltr 70.2 3.3 7.2E-05 44.5 2.8 117 724-845 46-195 (226)
472 PF06859 Bin3: Bicoid-interact 69.8 1.6 3.5E-05 41.9 0.3 42 800-841 21-70 (110)
473 PF07942 N2227: N2227-like pro 69.2 23 0.0005 39.2 9.0 45 801-845 180-240 (270)
474 cd08245 CAD Cinnamyl alcohol d 68.9 23 0.0005 38.5 9.0 92 466-569 161-256 (330)
475 TIGR03366 HpnZ_proposed putati 68.9 17 0.00037 39.1 7.9 90 467-569 120-218 (280)
476 COG1889 NOP1 Fibrillarin-like 68.4 7.1 0.00015 41.6 4.6 141 698-845 49-212 (231)
477 TIGR03451 mycoS_dep_FDH mycoth 68.1 23 0.00051 39.5 9.0 92 466-569 175-276 (358)
478 cd00401 AdoHcyase S-adenosyl-L 67.7 13 0.00029 43.4 7.1 84 467-569 201-289 (413)
479 cd08234 threonine_DH_like L-th 67.3 28 0.00061 37.8 9.3 90 466-569 158-257 (334)
480 COG1565 Uncharacterized conser 67.2 15 0.00033 42.1 7.2 66 431-500 45-122 (370)
481 cd05188 MDR Medium chain reduc 67.0 23 0.0005 36.6 8.2 92 466-569 133-232 (271)
482 PF00107 ADH_zinc_N: Zinc-bind 66.9 8.2 0.00018 36.2 4.4 84 477-572 1-92 (130)
483 PF05724 TPMT: Thiopurine S-me 65.9 2.6 5.7E-05 44.8 0.9 117 724-845 40-188 (218)
484 COG1092 Predicted SAM-dependen 65.8 4.4 9.5E-05 46.9 2.8 111 723-838 219-357 (393)
485 TIGR00006 S-adenosyl-methyltra 65.8 21 0.00045 40.2 7.9 40 466-505 19-62 (305)
486 cd08281 liver_ADH_like1 Zinc-d 65.7 21 0.00047 40.0 8.2 92 466-569 190-290 (371)
487 PF01555 N6_N4_Mtase: DNA meth 65.2 12 0.00026 38.1 5.6 50 452-503 178-229 (231)
488 cd08232 idonate-5-DH L-idonate 64.3 28 0.00061 38.0 8.6 91 467-569 165-262 (339)
489 cd08237 ribitol-5-phosphate_DH 64.2 23 0.00049 39.5 7.9 89 466-569 162-256 (341)
490 KOG1499 Protein arginine N-met 64.1 3 6.5E-05 47.3 1.0 106 710-820 47-164 (346)
491 TIGR01202 bchC 2-desacetyl-2-h 63.9 19 0.00041 39.5 7.2 83 467-569 144-231 (308)
492 cd08239 THR_DH_like L-threonin 63.3 29 0.00062 38.1 8.5 92 466-569 162-262 (339)
493 PF02636 Methyltransf_28: Puta 63.1 15 0.00032 39.5 6.0 35 468-502 19-65 (252)
494 TIGR02825 B4_12hDH leukotriene 62.6 39 0.00085 36.9 9.3 91 466-569 137-237 (325)
495 KOG1975 mRNA cap methyltransfe 62.3 5.7 0.00012 44.9 2.7 120 720-841 116-256 (389)
496 COG1867 TRM1 N2,N2-dimethylgua 62.2 40 0.00088 38.9 9.3 99 468-571 53-156 (380)
497 PRK11524 putative methyltransf 62.0 20 0.00044 39.3 7.0 42 466-507 207-250 (284)
498 PF01555 N6_N4_Mtase: DNA meth 62.0 5.8 0.00013 40.4 2.6 21 802-822 35-55 (231)
499 PF03514 GRAS: GRAS domain fam 61.7 89 0.0019 36.0 12.3 103 465-568 108-243 (374)
500 PLN02740 Alcohol dehydrogenase 61.5 35 0.00075 38.6 8.9 92 466-569 197-300 (381)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=5.9e-141 Score=1179.80 Aligned_cols=497 Identities=57% Similarity=1.078 Sum_probs=472.0
Q ss_pred CCcCCCCHHHHHHhhhhhcccccccCCCCC--CCCCcCCCCCCCCCCCCCCCCCcccccccCCCCchhhhhhhcchhhhh
Q 002884 353 DFIPCLDNTKAIQQLRTTAHYEHRERHCPE--EGPVCLVPLPEGYKVPIPWPKSRDKIWYRNVPHPMLAEVKGHQNWVRV 430 (870)
Q Consensus 353 ~y~pC~D~~~~~~~~~~~~~~~~~eRhCp~--~~~~ClVp~P~~Y~~P~~WP~SrD~iW~~Nvp~~~La~~k~~qnWv~~ 430 (870)
|||||+|+.++++++..+.++||||||||. ++++||||+|++|+.||+||+|||++||+|+||+.|+++|++|+|+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 799999999999998888999999999996 799999999999999999999999999999999999999999999999
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHH
Q 002884 431 TGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALE 510 (870)
Q Consensus 431 ~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~e 510 (870)
.|+.|.|||||++|.+|+.+|+++|.++++.+..+...+++||+|||+|+|+++|++++|++|.+++.+.+.+++++|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999986667778999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCc-CchhHHHHHHHhhccc
Q 002884 511 RGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVY-QKLGEDVEIWNAMSNL 589 (870)
Q Consensus 511 rgl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~-~tL~El~~~w~~~~~l 589 (870)
||+++++.+.+..+||||+++||+|||+.|+++|+.+.+.+|.|++|+|||||+|+++++|++ .+..++...|..+.++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999989999999999999999999999999 5667888999999999
Q ss_pred ccccchhHHHHHHHHHhhccceEEEecCchhHHhhhcC-CCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCC
Q 002884 590 TVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEKRNQ-MTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEA 668 (870)
Q Consensus 590 a~~mcW~~va~~~~~L~daGfaI~rkgf~~sCy~~r~~-~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~ 668 (870)
+..|||+++++..+ ++||+|+.+++||.+|+. ..||+|+.+++++.+||.+|++||++++......++.|+++
T Consensus 241 ~~~lCW~~va~~~~------~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 241 AKSLCWKKVAEKGD------TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHheeeCC------EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999975554 899999999999999986 78999998899999999999999999999766677888999
Q ss_pred CcccccCCCCCccccccccCCCCchhhHHHHHHhhcccccceee-eccccccccccccccccccchhHHhhhcCCCeEEE
Q 002884 669 WPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWRYVVSTSYM-SGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVM 747 (870)
Q Consensus 669 wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dye~W~~~V~~TY~-~~Lgi~W~~~RnvmDm~ag~GgfaaaL~~~~vwvm 747 (870)
||+||+++|+|+.... +.+.+.+.|.+|+++|+.+|..+|. ..+.++|++||||||||||||||||||++++||||
T Consensus 315 WP~RL~~~P~rl~~~~---~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVM 391 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGS---IPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVM 391 (506)
T ss_pred ChhhhccCchhhhcCC---cCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEE
Confidence 9999999999997643 4567899999999999999998552 33469999999999999999999999999999999
Q ss_pred EeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh
Q 002884 748 NVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA 827 (870)
Q Consensus 748 Nvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~ 827 (870)
||||+.++|||++||||||||+||||||+|+|||||||||||+||||.+++||++++||+||||||||||++||||..++
T Consensus 392 NVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 392 NVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred EecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEEeecCC----CceEEEEEe
Q 002884 828 VTEVENFLKSLHWEILFAFSKD----QEGVLSAQK 858 (870)
Q Consensus 828 ~~~~~~~~~~l~W~~~~~~~~~----~e~iL~~~K 858 (870)
+.+|+.|+++|||++++.++++ +|+||||+|
T Consensus 472 l~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999998876 799999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.93 E-value=1.1e-26 Score=261.60 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=117.2
Q ss_pred cccccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-Cccchhhhhcccccc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
-+.||.+||+|||+|+|||+|++++|.+|+++|.+.+ ++.++++|||+++++........+|| ++|||+||.+....+
T Consensus 115 ~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 115 GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred CCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccc
Confidence 3789999999999999999999999999999999988 89999999999999999877778887 999999994444433
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC----------hhhHHHHHHHHHcCCceEEEeecCCCceEEEEEeCC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE----------PSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKGN 860 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~----------~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K~~ 860 (870)
...- ..+|+|||||||||||||++.+ ...+.+|+.++++|||+.... +..+.|+||+.
T Consensus 195 ~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~----~~~~aIwqKp~ 262 (506)
T PF03141_consen 195 HPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE----KGDTAIWQKPT 262 (506)
T ss_pred hhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----eCCEEEEeccC
Confidence 3221 2799999999999999999965 356899999999999999874 33499999975
No 3
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.84 E-value=1.6e-20 Score=197.59 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=149.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
+..+|||||||+|.++..|... .|+++|+++.|+..+.. +.....+...+.+.+|+++++||+|+|+. .++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~-----~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ-----KDAADHYLAGDIESLPLATATFDLAWSNL-AVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh-----hCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhh
Confidence 4679999999999999888764 89999999998876653 22222344556688899999999999985 5899
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecCchhHHhh
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECYEK 624 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~sCy~~ 624 (870)
..++..+|.++.|+|||||+|+++ .++..+++++...|..+....+...+.........+.++|+.+
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~-~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------------ 182 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFT-TLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH------------ 182 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEE-eCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee------------
Confidence 999999999999999999999998 7788899999999977654333222222323333444333321
Q ss_pred hcCCCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCCCcccccCCCCCccccccccCCCCchhhHHHHHHhhc
Q 002884 625 RNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKHWR 704 (870)
Q Consensus 625 r~~~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dye~W~ 704 (870)
+.+..+.+|.+..++|++|+.+ |++.. ...+..+++++.....|.+.|..=.
T Consensus 183 -----------~~~~~~~~f~~~~~~l~~lk~~----G~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (251)
T PRK10258 183 -----------HIQPITLWFDDALSAMRSLKGI----GATHL-------------HEGRDPRILTRSQLQRLQLAWPQQQ 234 (251)
T ss_pred -----------eeeEEEEECCCHHHHHHHHHHh----CCCCC-------------CCCCCCCCCcHHHHHHHHHhccccC
Confidence 2344677999999999999998 66521 1112234556666677777765433
Q ss_pred ccccceeeecccccc
Q 002884 705 YVVSTSYMSGLGINW 719 (870)
Q Consensus 705 ~~V~~TY~~~Lgi~W 719 (870)
+++++||+++|++.+
T Consensus 235 g~~~lty~v~~~~~~ 249 (251)
T PRK10258 235 GRYPLTYHLFLGVIE 249 (251)
T ss_pred CCcceEEEEEEEEEE
Confidence 479999999997654
No 4
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.80 E-value=2.8e-20 Score=191.76 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=170.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
+....++|||||.|.+.+.|... .++-+|.|..|+..++ -+...++....++.+.+.|+|.+++||+|+++. .+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-sl 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SL 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhh-hh
Confidence 45678999999999999999886 7899999999887654 344455666677888899999999999999986 49
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHH--hhcccccccchhHHHHHHHHHhhccceEEEecCchh
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWN--AMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNE 620 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~--~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~s 620 (870)
||.++++..+..+...|||+|.|+.+ .++.+++.|++-... +++.... +.+. + .+|..++++|-.+-++||+
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fias-mlggdTLyELR~slqLAelER~GG-iSph-i-SPf~qvrDiG~LL~rAGF~-- 221 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIAS-MLGGDTLYELRCSLQLAELEREGG-ISPH-I-SPFTQVRDIGNLLTRAGFS-- 221 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhH-HhccccHHHHHHHhhHHHHHhccC-CCCC-c-ChhhhhhhhhhHHhhcCcc--
Confidence 99999999999999999999999998 899999999998753 3333222 3332 3 4788899999999999998
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCCCcccccCCCCCccccccccCCCCchhhHHHHH
Q 002884 621 CYEKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDY 700 (870)
Q Consensus 621 Cy~~r~~~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dy 700 (870)
.+ +.|.|...+-|+.|+.+|.+|++|++.+.+- ..++ ++.|.+..+..+.|
T Consensus 222 --------m~---tvDtDEi~v~Yp~mfeLm~dLq~MgEsn~~~----------~Rn~--------~l~Ret~vAaaAiY 272 (325)
T KOG2940|consen 222 --------ML---TVDTDEIVVGYPRMFELMEDLQGMGESNAAL----------NRNA--------ILNRETMVAAAAIY 272 (325)
T ss_pred --------cc---eecccceeecCchHHHHHHHHHhhcccchhh----------ccCc--------cccHHHHHHHHHHH
Confidence 22 2588889999999999999999995544221 1121 22344555555555
Q ss_pred Hh----hcccccceeeeccccccccc
Q 002884 701 KH----WRYVVSTSYMSGLGINWSNV 722 (870)
Q Consensus 701 e~----W~~~V~~TY~~~Lgi~W~~~ 722 (870)
+. -.+.+|+||+++|.++|+.-
T Consensus 273 ~smya~e~~~iPATfqiiy~iGWk~~ 298 (325)
T KOG2940|consen 273 QSMYATEDGTIPATFQIIYMIGWKPH 298 (325)
T ss_pred HHHhcCCCCCcceeEEEEEEEccCcC
Confidence 43 33379999999999999754
No 5
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=1.8e-19 Score=206.50 Aligned_cols=100 Identities=17% Similarity=0.329 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCc--ccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGT--KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~da--e~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+..+.. .....+.+.++ .+. ..+|+++++||+|+|+.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~- 112 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL- 112 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCCCCCCEEEEehhhh-
Confidence 4679999999999999999875 89999999999876542 11222333333 343 357888999999999865
Q ss_pred cccccC--hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 542 VPWHID--GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 542 lhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++|..+ ...+|.+++|+|||||+|++...
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 565554 37899999999999999999753
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=1.8e-15 Score=159.83 Aligned_cols=101 Identities=27% Similarity=0.347 Sum_probs=86.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||||.++..+++. .|+++|+|+.|+..|+. .+.+.+...+ +.+.+++.|||+|++||+|.++++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~-k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE-KLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHH-HhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 6899999999999999999874 89999999999999884 4444443334 445568999999999999999975
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..|...+|+|++|||||||.+++..
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 8888999999999999999999998873
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.59 E-value=3.6e-15 Score=157.44 Aligned_cols=102 Identities=29% Similarity=0.433 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||||.++..|+++ .|+++|+|+.|+..|+.+.. ..+...+.+ ..+++.|||++++||+|+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~-~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK-REGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH-HTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH-hhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 46789999999999999988763 79999999999999885444 444434444 445799999999999999986
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ ++...|...+|+|++|+|||||.|++..
T Consensus 125 g-lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 125 G-LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp --GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h-HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 4 7777889999999999999999999874
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=4.4e-15 Score=130.74 Aligned_cols=92 Identities=30% Similarity=0.483 Sum_probs=71.8
Q ss_pred EEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccccCh
Q 002884 472 LDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG 548 (870)
Q Consensus 472 LDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~ 548 (870)
||||||+|.++..|+++ .|+++|+++.++..++... ...+ ..+...+...+||++++||+|++..+ ++|..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~~~--~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KNEG--VSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TTST--EEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cccC--chheeehHHhCccccccccccccccc-eeeccCH
Confidence 89999999999999875 8999999999877665322 2222 23556667999999999999999864 7777888
Q ss_pred HHHHHHHHhhcCCCcEEEE
Q 002884 549 GKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 549 ~~vL~Ei~RVLKPGG~Lv~ 567 (870)
..+|.++.|+|||||+|+|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 9
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=5.2e-14 Score=144.74 Aligned_cols=201 Identities=19% Similarity=0.250 Sum_probs=127.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||||||+|.++..|+.. .++++|+++.++..+..... ....+...+...+|+++++||+|+++.+ +
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLA-L 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhh-h
Confidence 3478999999999998888764 68999999998766553221 1223445556788888899999999864 8
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecCchhHH
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNECY 622 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~sCy 622 (870)
||..++..+|.++.++|+|||.|+++ .+....+.+....+... ..++.........+... |....
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~-f~~~~-------- 173 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFS-TFGPGTLHELRQSFGQH-----GLRYLSLDELKALLKNS-FELLT-------- 173 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEE-eCCccCHHHHHHHHHHh-----ccCCCCHHHHHHHHHHh-cCCcE--------
Confidence 88888999999999999999999998 56666666655555321 01111121222223322 22111
Q ss_pred hhhcCCCCCCCCCCCCCCCcccCCcccccccCCCcccccCCCCCCCCcccccCCCCCccccccccCCCCchhhHHHHHHh
Q 002884 623 EKRNQMTPPMCQNEEDPNAAWYVPLQACVHRVPVDKAERGSQWPEAWPHRLQRPPYWLNSSQMGIYGRPAPQDFTRDYKH 702 (870)
Q Consensus 623 ~~r~~~~pplC~~d~d~~~~WY~~l~aci~~L~~~~~~~Ga~~~~~wp~RL~~~p~~l~~~~~Gl~gr~t~e~f~~dye~ 702 (870)
........+|.+...++..|+.+ |+... + . .. .++.....|.+.|..
T Consensus 174 ------------~~~~~~~~~~~~~~~~~~~l~~~----g~~~~----------~--~--~~---~~~~~~~~~~~~~~~ 220 (240)
T TIGR02072 174 ------------LEEELITLSFDDPLDVLRHLKKT----GANGL----------S--S--GR---TSRKQLKAFLERYEQ 220 (240)
T ss_pred ------------EEEEEEEEeCCCHHHHHHHHHHh----ccCcC----------C--C--CC---CCHHHHHHHHHHHHH
Confidence 12223455788888899998887 54421 0 0 00 122233445555432
Q ss_pred hc--ccccceeeeccccccc
Q 002884 703 WR--YVVSTSYMSGLGINWS 720 (870)
Q Consensus 703 W~--~~V~~TY~~~Lgi~W~ 720 (870)
-. +.|+.+|.++++++|+
T Consensus 221 ~~~~~gi~~~~~~~~~~~~k 240 (240)
T TIGR02072 221 EFQPDGLPLTYHVVYGIAKK 240 (240)
T ss_pred hhcCCCceeEEEEEEEEEEC
Confidence 21 2477899998888763
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.54 E-value=2.1e-13 Score=151.25 Aligned_cols=102 Identities=27% Similarity=0.434 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||||||+|.++..|++. .|+|+|+++.|+..+.. .+...++. ..+.+.+...+||++++||+|+|..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45789999999999999988863 89999999999988774 44445542 33445566889999999999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..+...+|.+++|+|||||.|++.+
T Consensus 196 -~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 -GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred -hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 6666788999999999999999999974
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.54 E-value=2e-13 Score=146.03 Aligned_cols=104 Identities=23% Similarity=0.261 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHH--HcCCCcE-EEEcCcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFAL--ERGIPAI-SAVMGTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~--ergl~~~-~~v~dae~LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|++. .|+|+|+|+.|+..|..+... ..+.+.+ +...+...+|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45789999999999998887652 799999999999888644321 2223333 344556889999999999999
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+.+ +|+..++..+|.|++|+|||||+|++.+.
T Consensus 152 ~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYG-LRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecc-cccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 865 78788999999999999999999998853
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.52 E-value=3e-14 Score=137.80 Aligned_cols=150 Identities=27% Similarity=0.419 Sum_probs=102.6
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP 528 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp 528 (870)
+.+.+..+.+. ..+..+|||||||+|.++..|... +++|+|+++.++.. . ............+++
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPR---LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTC---TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCH
T ss_pred HHHHHHHHhcc---cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhcc
Confidence 34445444432 246789999999999999999876 99999999987654 1 122223323355567
Q ss_pred CCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhc
Q 002884 529 RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSA 608 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~da 608 (870)
+++||+|+|+. +++|..++..+|.++.++|||||+|+++.+............|..........++.........++++
T Consensus 76 ~~~fD~i~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 154 (161)
T PF13489_consen 76 DGSFDLIICND-VLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA 154 (161)
T ss_dssp SSSEEEEEEES-SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred ccchhhHhhHH-HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence 88999999985 58888899999999999999999999996544333333333332211110222333344667778999
Q ss_pred cceEEE
Q 002884 609 GFAIYR 614 (870)
Q Consensus 609 GfaI~r 614 (870)
||.+..
T Consensus 155 G~~iv~ 160 (161)
T PF13489_consen 155 GFEIVE 160 (161)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 998864
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.50 E-value=2.4e-13 Score=145.70 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=108.8
Q ss_pred hcchhhhhcCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhh
Q 002884 423 GHQNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKD 499 (870)
Q Consensus 423 ~~qnWv~~~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~m 499 (870)
+...|-.+.|..+.-||| ... ...+...+. ..++.+|||||||+|..+..|+.. .|+++|+++.|
T Consensus 20 ~~~~~e~~~g~~~~~~gg-------~~~-~~~~l~~l~----l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~ 87 (263)
T PTZ00098 20 GIKAYEFIFGEDYISSGG-------IEA-TTKILSDIE----LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM 87 (263)
T ss_pred cchhHHHHhCCCCCCCCc-------hHH-HHHHHHhCC----CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence 446677777755554554 111 222222221 245789999999999988888653 89999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc-cChHHHHHHHHhhcCCCcEEEEEECCCcC--ch
Q 002884 500 EHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH-IDGGKLLLELNRVLRPGGYFVWSATPVYQ--KL 576 (870)
Q Consensus 500 l~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~--tL 576 (870)
+..|...... .....+...+...+|+++++||+|++..+.+|+. .+...+|++++|+|||||+|+++...... ..
T Consensus 88 ~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~ 165 (263)
T PTZ00098 88 VNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW 165 (263)
T ss_pred HHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc
Confidence 8877643322 1122333445577899999999999976545554 26789999999999999999998542211 11
Q ss_pred hH-HHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 577 GE-DVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 577 ~E-l~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.+ ....+.. ....+ + ........++++||.+..
T Consensus 166 ~~~~~~~~~~---~~~~~-~-~~~~~~~~l~~aGF~~v~ 199 (263)
T PTZ00098 166 DEEFKAYIKK---RKYTL-I-PIQEYGDLIKSCNFQNVV 199 (263)
T ss_pred HHHHHHHHHh---cCCCC-C-CHHHHHHHHHHCCCCeee
Confidence 11 1111111 00001 1 123456678888888766
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=4.1e-12 Score=131.98 Aligned_cols=102 Identities=26% Similarity=0.346 Sum_probs=82.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|++. .|+|+|+++.++..++... ...+.+.+.++ .+...+|+++++||+|+++.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV-KDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 45789999999999998888642 7999999999998877543 33444444444 45677888889999999985
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+++..+...+|.++.|+|+|||+|++..
T Consensus 123 -~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 123 -GLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 47888888999999999999999999874
No 15
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.42 E-value=4.2e-12 Score=147.88 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=73.2
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-----CChhHHHhhCccceeccccccc----cCCC-Cccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESF----STYP-RSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f----~tyP-rtyDllHa~~ 791 (870)
-..+||+|||.|+|.++|+...=- .|++-++-. ..+..+.++||-.+. -+|..+ .-|| .+.|-||.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i-- 423 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI-- 423 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE--
Confidence 466999999999999999866210 144444332 445566777864332 233322 3345 78888877
Q ss_pred cccc-c------cCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcC-CceE
Q 002884 792 LFSQ-L------KNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 792 lfS~-~------~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l-~W~~ 842 (870)
.|.. | +.|=--...|.++-|+|+|||.+.++ |..++...+...+..- +|+.
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 5652 1 22322347899999999999988776 6666666655555443 3554
No 16
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.41 E-value=3.2e-12 Score=136.56 Aligned_cols=109 Identities=23% Similarity=0.267 Sum_probs=85.0
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|..+..++. ..|+++|+++.|+..|+. .....+++.+.++ .+...+|+++++||+|+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~- 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISN- 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc-
Confidence 3578999999999986655443 269999999999988874 3444555544444 4467889988999999997
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEECCCcCch
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKL 576 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL 576 (870)
+++++..+...+|.+++|+|||||+|++++......+
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~ 190 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGEL 190 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCC
Confidence 5688888889999999999999999999865444433
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.41 E-value=4.6e-12 Score=139.82 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcE-EEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAI-SAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~-~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||||||+|.++..|+.. .|+|||+++.|+..|+.. +...+. ..+ +...+.+.+|+++++||+|+|..+ +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v-L 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV-I 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-H
Confidence 4679999999999999988875 899999999999888743 332222 223 334445788888899999999864 7
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++..++..+|.++.|+|||||.|++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 7788999999999999999999999853
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=3.6e-12 Score=140.64 Aligned_cols=143 Identities=21% Similarity=0.143 Sum_probs=94.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.+.+|||||||+|.++..|+.. .|+|+|+++.|+..+........ .....+...+.+.+|+ +++||+|+|..+ +
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v-l 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV-L 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-h
Confidence 4689999999999999988764 59999999998865432211111 2223444455688888 788999999754 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhH-H--HHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE-D--VEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E-l--~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
++..++..+|.+++|+|+|||.|++.+......... + ...+..+.... .-..+......+.++||.+.+
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~---~lps~~~l~~~L~~aGF~~i~ 271 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY---FIPSVPALKNWLERAGFKDVR 271 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce---eCCCHHHHHHHHHHcCCceEE
Confidence 667888999999999999999999874322211100 0 11122222110 001233556778899998776
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=2.6e-12 Score=117.93 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchhHHHHhc--C--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cCCCCCCceeEEEecc-c
Q 002884 467 YTRVSLDVGCGVASFGGYLFE--R--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RLQFPRNVFDLVHCAR-C 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~--r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~LPfpd~SFDlV~Ss~-~ 540 (870)
++.+|||||||+|.++..|++ . +|+|+|+++.|+..++.+.......+.+.++.++- ..+-....||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999998887 3 89999999999999886654434345555555433 2233345599999986 2
Q ss_pred ccc-cc--cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVP-WH--IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alh-w~--~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++ +. .+...+|..+.+.|+|||+|++..
T Consensus 81 -~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 -LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22 21 345789999999999999999973
No 20
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.36 E-value=4.4e-12 Score=133.79 Aligned_cols=102 Identities=25% Similarity=0.248 Sum_probs=85.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----------CEEEEeCChhhHHHHHHHHHHHcCCCc---EEEEc-CcccCCCCCC
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----------DVLTMSFAPKDEHDAQIQFALERGIPA---ISAVM-GTKRLQFPRN 530 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----------~VtgVDiSp~ml~~A~vq~A~ergl~~---~~~v~-dae~LPfpd~ 530 (870)
..++.++||++||||.++..+.+. +|+++|++|.|+..+. +.+.++++.. ..++. +++.|||+++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 346799999999999888777642 7999999999999987 4555565532 44555 6799999999
Q ss_pred ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+||+..+++. +-.+.++.++|+|++|||||||.|.+-
T Consensus 177 s~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 177 SFDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred cceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999999865 777789999999999999999999975
No 21
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.36 E-value=1.3e-11 Score=129.73 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHHHcCC--CcEEEEcCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFALERGI--PAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~ergl--~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
++.+|||||||+|.++..|++ .+|+|+|+++.|+..|+.... ..+. ...+...+...++++ .+|+|+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH-hcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 567999999999998887764 269999999999988875443 3222 233444455677765 48999998
Q ss_pred ccccccccC--hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCRVPWHID--GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.+ +||..+ ...+|.+++|+|||||.|+++.+.
T Consensus 130 ~~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FT-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cc-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 64 777643 478999999999999999998543
No 22
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=3.1e-12 Score=135.74 Aligned_cols=95 Identities=23% Similarity=0.422 Sum_probs=77.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.+ .|+|+|+|+.|+..|+ ++++ .+...+...++ ++++||+|+|+. +
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-----~~~~--~~~~~d~~~~~-~~~~fD~v~~~~-~ 98 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-----ERGV--DARTGDVRDWK-PKPDTDVVVSNA-A 98 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-----hcCC--cEEEcChhhCC-CCCCceEEEEeh-h
Confidence 35789999999999999888754 7999999999887664 3343 33444555554 567899999986 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+||..++..+|.+++|+|||||+|++..
T Consensus 99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 99 LQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 8898899999999999999999999973
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.35 E-value=5.2e-12 Score=123.57 Aligned_cols=102 Identities=23% Similarity=0.353 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC--CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ--FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP--fpd~SFDlV~Ss 538 (870)
...+|||||||+|.++..|++ .+++|+|+++.|+..|+ +.+.+.+++++.+.. +...++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467999999999999999883 38999999999999988 456666776555544 456677 66 889999998
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. ++++..+...+|.++.++|++||.+++....
T Consensus 81 ~-~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 G-VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S-TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4 4777788889999999999999999998543
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=1.5e-11 Score=141.46 Aligned_cols=142 Identities=23% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+|+|+|+.++..|... +........+...+...+|+++++||+|+|..+ +
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 35779999999999988888763 799999999998877643 222222233445556778888899999999864 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCc--hhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQK--LGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t--L~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|..++..+|.+++|+|||||.|++++...... ..+....+... ...+ .........+.++||.+..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---g~~~--~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR---GYDL--HDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc---CCCC--CCHHHHHHHHHHCCCeeee
Confidence 667889999999999999999999985322211 11211222211 0111 1233456678889998875
No 25
>PRK05785 hypothetical protein; Provisional
Probab=99.32 E-value=7.3e-12 Score=131.54 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||||||||.++..|++. .|+|+|+|+.|+..|... . ...+.+.+.+||++++||+|+|+.+ +|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-----~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-----D---DKVVGSFEALPFRDKSFDVVMSSFA-LH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-----c---ceEEechhhCCCCCCCEEEEEecCh-hh
Confidence 3679999999999999888765 899999999998876531 1 2345567889999999999999864 78
Q ss_pred cccChHHHHHHHHhhcCCCc
Q 002884 544 WHIDGGKLLLELNRVLRPGG 563 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG 563 (870)
+..++..+|+|++|+|||.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ccCCHHHHHHHHHHHhcCce
Confidence 88899999999999999953
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.32 E-value=2.2e-11 Score=134.13 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=92.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHH-HcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFAL-ERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~-ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++++|||||||+|.++..++.. .|+|+|+|+.|+..+...... .......+...+...+|.. .+||+|+|+.+ +
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv-L 198 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV-L 198 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch-h
Confidence 5789999999999988877654 599999999988664321111 1111223344556777764 47999999864 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHH---HHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGED---VEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El---~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+|..++..+|.+++|+|||||.|++.+..+....... ...+..+..... .+ ........+..+||...+
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~f--lp-S~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYF--IP-SVSALKNWLEKVGFENFR 270 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccccc--CC-CHHHHHHHHHHCCCeEEE
Confidence 6667889999999999999999999743322211100 011222211110 11 133456678889998876
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.31 E-value=2.8e-12 Score=134.80 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
.+.+|||||||.|.++..|++. .|+|+|+++.++..|+ ..|.+.|+...+.....+.|-...++||+|+|..+ +++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-lEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-LEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-HHc
Confidence 5789999999999999999875 9999999999999998 46777777543334445666666689999999986 667
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+++..+++.+.++|||||.+++|+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEec
Confidence 7899999999999999999999994
No 28
>PRK08317 hypothetical protein; Provisional
Probab=99.31 E-value=5.3e-11 Score=122.12 Aligned_cols=102 Identities=28% Similarity=0.300 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++.+|||+|||+|.++..++. ..++++|+++.++..++.. ....+....+...+...+|+++++||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 4578999999999998888764 2799999999988776643 111122233344456778888899999999865
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..++..++.++.++|||||+|++..
T Consensus 97 -~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 -LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred -hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 7777889999999999999999999874
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=1.2e-11 Score=131.31 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-CcccC-CCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTKRL-QFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae~L-Pfpd~SFDlV~Ss~~a 541 (870)
.+.+|||||||+|.++..|+.. .|+++|+++.|+..|+. .+...++. .+.++. +...+ ++++++||+|+|..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v- 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV- 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH-
Confidence 4679999999999999999876 89999999999998874 44445542 334444 44444 466789999999854
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++|..++..+|.++.|+|||||+|++..
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7888889999999999999999999863
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=1.2e-11 Score=126.94 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..|+++ .|+|+|+|+.|+..++. .+...++..+ ..+.+...++++ ++||+|+|+.+ +|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-LM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-hh
Confidence 4679999999999999999876 89999999999988874 4444555433 334444556664 57999999864 66
Q ss_pred ccc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 544 WHI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 544 w~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|.. +...++.++.|+|||||++++.
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 654 3479999999999999996654
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.30 E-value=1.5e-11 Score=126.05 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||+|||+|.++.+|+++ .|+|+|+++.|+..++. .+...++.....+.+...++++ ++||+|+|+.+ +|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecc-ccc
Confidence 3579999999999999999875 89999999999988774 4455566544444444445554 57999999864 554
Q ss_pred cc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. +...++.+++|+|||||+|++.
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 42 3478999999999999996654
No 32
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.29 E-value=3e-11 Score=128.13 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEE-EcCcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFALERGIP-AISA-VMGTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~-v~dae~LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|+. .+|+|+|+|+.|+..|+.+... .+.. .+.+ ..+...+|++ .||+|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 3568999999999998877754 2899999999999998865543 3332 2333 3445667765 4899999
Q ss_pred cccccccccCh--HHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVPWHIDG--GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+.+ +|+..+. ..+|.+++|+|||||.|+++..
T Consensus 132 ~~~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 132 NFT-LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhH-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 864 6665433 6899999999999999999853
No 33
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.29 E-value=1.6e-11 Score=131.86 Aligned_cols=102 Identities=24% Similarity=0.292 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC-------CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-------DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-------~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
...+|||||||+|.++..|+.. .|+|+|+|+.|+..|. ++.....+.+.+...+||++++||+|++.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~-----~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA-----KRYPQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH-----HhCCCCeEEEeecccCCCcCCceeEEEEec
Confidence 4578999999999998887642 5899999999876654 233334455666788999999999999864
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHH
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEI 582 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~ 582 (870)
+ ...+.++.|+|||||+|++. .+....+.+++..
T Consensus 160 ~--------~~~~~e~~rvLkpgG~li~~-~p~~~~l~el~~~ 193 (272)
T PRK11088 160 A--------PCKAEELARVVKPGGIVITV-TPGPRHLFELKGL 193 (272)
T ss_pred C--------CCCHHHHHhhccCCCEEEEE-eCCCcchHHHHHH
Confidence 2 13468999999999999998 5666666665543
No 34
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=3.9e-11 Score=123.36 Aligned_cols=100 Identities=25% Similarity=0.297 Sum_probs=82.8
Q ss_pred CCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC-CCCCceeEEEeccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ-FPRNVFDLVHCARCRV 542 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP-fpd~SFDlV~Ss~~al 542 (870)
...||+||||||..-.++.- ..|+++|.++.|...+...++..+......++. +.+.|| ++++++|.|+|.++ +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-L 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-L 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-E
Confidence 34689999999987776663 389999999999998887777666665553444 468998 89999999999865 5
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
--+.++...|.++.|+|||||.++|.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 55688999999999999999999998
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.28 E-value=3.4e-11 Score=127.51 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..|+.. +|+|+|+++.|+..++.. .....+...+...++ +.++||+|+|+. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~ 102 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQ-PPQALDLIFANA-S 102 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-----CCCCeEEECchhccC-CCCCccEEEEcc-C
Confidence 35789999999999999888753 799999999988766532 112233344444443 456899999986 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+||..+...+|.++.++|||||.|++..
T Consensus 103 l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 103 LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 8898899999999999999999999973
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.25 E-value=2e-12 Score=117.12 Aligned_cols=93 Identities=25% Similarity=0.315 Sum_probs=56.9
Q ss_pred EEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC--CCCCCceeEEEecccccccc
Q 002884 472 LDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL--QFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 472 LDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L--Pfpd~SFDlV~Ss~~alhw~ 545 (870)
||||||+|.++..|+.. +++++|+|+.|+..++.++.................+ ....++||+|+++. ++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999988877653 8999999999997666544443322222222222221 12236999999985 58888
Q ss_pred cChHHHHHHHHhhcCCCcEE
Q 002884 546 IDGGKLLLELNRVLRPGGYF 565 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~L 565 (870)
.+...+|+.++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 88899999999999999986
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=1e-10 Score=130.01 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..+++ ..|+++|+++.|+..|+.... ..+ ..+...+...+|+++++||+|+++. .
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~--i~~i~gD~e~lp~~~~sFDvVIs~~-~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKE--CKIIEGDAEDLPFPTDYADRYVSAG-S 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccC--CeEEeccHHhCCCCCCceeEEEEcC-h
Confidence 3567999999999998877764 379999999999888764322 112 2334455678899999999999985 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECCCcCc-hhH-HHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQK-LGE-DVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~t-L~E-l~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
+++..+...+|++++|+|||||.|++........ +.. ....|. .+....+....++++||...+
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~---------~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM---------LFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc---------cCCCHHHHHHHHHHCCCeEEE
Confidence 7777788999999999999999998864322110 110 111111 111233556778889998766
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.24 E-value=6.9e-12 Score=114.51 Aligned_cols=92 Identities=28% Similarity=0.409 Sum_probs=71.0
Q ss_pred EEEECCCCchhHHHHhc-------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 471 SLDVGCGVASFGGYLFE-------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 471 VLDIGCGtG~~a~~La~-------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
|||+|||+|..+..|.. ..++++|+++.|+..+... ....+.+..+.+.+...+++.+++||+|+|+.+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~-~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKR-FSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHH-SHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHh-chhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999998877763 4899999999999888744 334566777777777889988999999999655455
Q ss_pred cccC--hHHHHHHHHhhcCCCc
Q 002884 544 WHID--GGKLLLELNRVLRPGG 563 (870)
Q Consensus 544 w~~D--~~~vL~Ei~RVLKPGG 563 (870)
+..+ ...+|.++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 5432 3799999999999998
No 39
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.20 E-value=7.8e-11 Score=121.58 Aligned_cols=100 Identities=19% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cc-ccCC--CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GT-KRLQ--FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-da-e~LP--fpd~SFDlV~Ss 538 (870)
+..+|||||||+|.++..|+.. .|+|+|+++.|+..+.... ...+++.+.++. +. ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKI-EEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHH-HHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4679999999999998888653 7999999999998887443 344554444444 45 5666 778899999997
Q ss_pred ccccccccC--------hHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHID--------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D--------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++ .+|... ...+|.++.++|||||+|+++
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 54 555431 367999999999999999998
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.19 E-value=1.3e-10 Score=120.20 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=75.7
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-c-EEEEcCcccCCCCCCceeEEEeccccc
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-A-ISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~-~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.+|||||||+|.++..+++. .|+|+|+++.++..+.... ...|+. . .+...+....|++ ++||+|++..+ +
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-I 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHH-H
Confidence 37999999999988888753 7999999999888877443 344443 2 3333444455665 47999999764 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++..+...+|.++.++|||||+|++...
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 6667889999999999999999999853
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.18 E-value=2.7e-10 Score=116.86 Aligned_cols=96 Identities=24% Similarity=0.196 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..++. ..|+++|+++.|+..|+. .+...+++.+.++. +...++. .++||+|+|+.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 478999999999998887764 389999999999998874 45556665444444 3456666 67899999963
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ .+...++.+++++|||||+|++..
T Consensus 121 ~---~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 121 V---ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 356889999999999999999874
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.18 E-value=1.9e-10 Score=119.28 Aligned_cols=143 Identities=21% Similarity=0.196 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC--CcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI--PAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl--~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||||||+|.++..|+.. .|+|+|+++.|+..|+.+.. ..+. ...+.+.+...++ ++||+|++..+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 5789999999999999999865 89999999999988875443 3333 2233444445554 7899999976544
Q ss_pred cccc-ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHH---HHHHHhhcccccccchhHHHHHHHHHhhccceEEEec
Q 002884 543 PWHI-DGGKLLLELNRVLRPGGYFVWSATPVYQKLGED---VEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKP 616 (870)
Q Consensus 543 hw~~-D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El---~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkg 616 (870)
|+.. +...++.++.+++++++++.+. + ....+... ...|..... ...+.+.........+..+||.+....
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFA-P-KTAWLAFLKMIGELFPGSSR-ATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEEC-C-CchHHHHHHHHHhhCcCccc-ccceEEecHHHHHHHHHHcCceeeeee
Confidence 4432 3478899999999988777764 2 21111111 111111111 111122223355667888999988754
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.18 E-value=8.9e-11 Score=127.20 Aligned_cols=98 Identities=16% Similarity=0.285 Sum_probs=76.3
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
..+|||||||+|.++.+|+.. .|+|+|+++.++..++ +.+...++.....+.+....++ +++||+|+++.+ +|+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhhC
Confidence 459999999999999999875 8999999999998876 4555667654444445444444 678999999854 6654
Q ss_pred c--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 546 I--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 ~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. +...++.++.|+|+|||++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 3478999999999999997764
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.17 E-value=1.8e-10 Score=124.61 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=71.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCcccCCCCCCceeEEEecc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+++.+|||||||.|.++.+++++ +|+|+.+|+.....++ +.+.+.|+.. .+...+...++. +||.|+|..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 357899999999999999999886 8999999999887776 4555667652 333444455543 899999986
Q ss_pred cccccc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.-|.. .+...+|..+.|+|||||.|++..
T Consensus 136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 136 MFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred chhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 533332 355899999999999999999763
No 45
>PRK06922 hypothetical protein; Provisional
Probab=99.16 E-value=1.8e-10 Score=135.89 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--CCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--FPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--fpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..|+. ..|+|+|+++.|+..|+.+. ...+....+...+...+| |++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 468999999999998877764 38999999999998887443 333443334445556677 88899999999854
Q ss_pred ccccc-------------cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWH-------------IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~-------------~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+|+. .+...+|++++|+|||||.|++.+.
T Consensus 497 -LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 -LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5532 2347899999999999999999853
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.14 E-value=6.2e-10 Score=120.45 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=105.6
Q ss_pred cCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC
Q 002884 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI 513 (870)
Q Consensus 437 FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl 513 (870)
|+.+...+..+...-.+.+.+.+. ..++.+|||||||.|.++.++++. +|+|+++|+++...++ +.++++|+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~----L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLG----LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcC----CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCC
Confidence 455544455544444555555433 357999999999999999999876 8999999999988887 44566777
Q ss_pred C-cE-EEEcCcccCCCCCCceeEEEeccccccccc--ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhccc
Q 002884 514 P-AI-SAVMGTKRLQFPRNVFDLVHCARCRVPWHI--DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNL 589 (870)
Q Consensus 514 ~-~~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~l 589 (870)
+ .+ +...+...+ .+.||-|+|... +++.- ....+|..++++|+|||.+++-+.............|-.---+
T Consensus 121 ~~~v~v~l~d~rd~---~e~fDrIvSvgm-fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiF 196 (283)
T COG2230 121 EDNVEVRLQDYRDF---EEPFDRIVSVGM-FEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIF 196 (283)
T ss_pred CcccEEEecccccc---ccccceeeehhh-HHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCC
Confidence 6 22 333333333 344999999854 55543 3589999999999999999986433333111112223221112
Q ss_pred ccccchhHHHHHHHHHhhccceEEE
Q 002884 590 TVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 590 a~~mcW~~va~~~~~L~daGfaI~r 614 (870)
....++. +........+.||.+..
T Consensus 197 PgG~lPs-~~~i~~~~~~~~~~v~~ 220 (283)
T COG2230 197 PGGELPS-ISEILELASEAGFVVLD 220 (283)
T ss_pred CCCcCCC-HHHHHHHHHhcCcEEeh
Confidence 3333332 22334445667777654
No 47
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.14 E-value=3e-10 Score=116.38 Aligned_cols=100 Identities=22% Similarity=0.348 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC---CCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ---FPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP---fpd~SFDlV~Ss 538 (870)
...+|||||||+|.++..|+.. .|+|+|+++.++..|.. .+...++.++.++.+ ...++ +++++||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~-~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANN-KANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999888764 89999999999988774 444556666655554 34333 566799999987
Q ss_pred ccccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+. .+|.... ..+|.++.|+|||||.|++.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 53 6665432 57899999999999999998
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.13 E-value=9.7e-10 Score=113.49 Aligned_cols=103 Identities=25% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcC-CCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERG-IPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~erg-l~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..++. .+++++|+++.++..++........ ....+...+...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 467999999999998877754 4799999999988887754432211 1233444455667777889999999854
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+++..+...+|..+.++|+|||+|++...
T Consensus 131 -l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 -LRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred -cccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 67777889999999999999999988743
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.11 E-value=3.5e-10 Score=121.61 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=82.1
Q ss_pred ccccccHHHHHHHHHHHhhhhhc---CCCCCEEEEECCCCch----hHHHHhc---------CCEEEEeCChhhHHHHHH
Q 002884 442 TQFIHGALHYIDFIQQAVPKIAW---GKYTRVSLDVGCGVAS----FGGYLFE---------RDVLTMSFAPKDEHDAQI 505 (870)
Q Consensus 442 t~F~~gA~~Yid~L~~~Lp~i~~---g~~~~~VLDIGCGtG~----~a~~La~---------r~VtgVDiSp~ml~~A~v 505 (870)
+.|.+....+.......+|.+.. ..+..+|||+|||+|. ++..|++ ..|+|+|+++.|+..|+.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 44555555544444444443321 2245699999999995 4444432 279999999999988774
Q ss_pred HHH---HHcCCC------------------------cEEEEcCcccCCCCCCceeEEEecccccccccC--hHHHHHHHH
Q 002884 506 QFA---LERGIP------------------------AISAVMGTKRLQFPRNVFDLVHCARCRVPWHID--GGKLLLELN 556 (870)
Q Consensus 506 q~A---~ergl~------------------------~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D--~~~vL~Ei~ 556 (870)
..- .-++++ ..+.+.+....+++.+.||+|+|..+ ++|..+ ...++.+++
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv-l~yf~~~~~~~~l~~l~ 229 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV-LIYFDEPTQRKLLNRFA 229 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh-HHhCCHHHHHHHHHHHH
Confidence 210 001111 23334455666777889999999866 444433 368999999
Q ss_pred hhcCCCcEEEEE
Q 002884 557 RVLRPGGYFVWS 568 (870)
Q Consensus 557 RVLKPGG~Lv~S 568 (870)
++|+|||+|++.
T Consensus 230 ~~L~pGG~L~lg 241 (264)
T smart00138 230 EALKPGGYLFLG 241 (264)
T ss_pred HHhCCCeEEEEE
Confidence 999999999997
No 50
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.11 E-value=1.5e-09 Score=108.91 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=76.8
Q ss_pred HHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC
Q 002884 454 FIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR 529 (870)
Q Consensus 454 ~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd 529 (870)
.|.+.+... +..+|||+|||+|.++..|+.+ .|+++|+++.++..++. .+...++..+.++..+..-++++
T Consensus 22 lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~-n~~~n~~~~v~~~~~d~~~~~~~ 96 (170)
T PF05175_consen 22 LLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR-NAERNGLENVEVVQSDLFEALPD 96 (170)
T ss_dssp HHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH-HHHHTTCTTEEEEESSTTTTCCT
T ss_pred HHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHhcCccccccccccccccccc
Confidence 455554432 4779999999999999998875 59999999999888774 44555665444444433334457
Q ss_pred CceeEEEecccccccccC-----hHHHHHHHHhhcCCCcEEEEE
Q 002884 530 NVFDLVHCARCRVPWHID-----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D-----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..||+|+|+.- ++.-.+ ...++.++.+.|||||.|++.
T Consensus 97 ~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 97 GKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 89999999853 222222 267899999999999999776
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.10 E-value=1.1e-09 Score=101.50 Aligned_cols=97 Identities=23% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CCCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LPfpd~SFDlV~Ss~~ 540 (870)
++.+|||||||+|.++..++.. .|+++|+++.++..+.... ...+.+...++.+ ... ++....+||+|++..+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNA-RRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHH-HHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4679999999999999888764 7999999999998887443 3445444444433 222 4444468999998642
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+ ....++.++.|+|+|||+|++.
T Consensus 98 -~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 -GG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred -ch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 22 3468999999999999999987
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.10 E-value=8e-10 Score=120.11 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
++.+|||+|||+|.++..++.. +|+++|+++.++..|+... ...++... ...... .+++..+.||+|+++.. .
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~-~~n~~~~~~~~~~~~-~~~~~~~~fDlVvan~~-~ 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNA-ELNQVSDRLQVKLIY-LEQPIEGKADVIVANIL-A 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCcceEEEecc-cccccCCCceEEEEecC-H
Confidence 4689999999999988777653 7999999999998887543 44444332 222222 33455678999999742 2
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.....++.++.++|||||+|++++
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 234678999999999999999984
No 53
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.08 E-value=3.3e-09 Score=108.39 Aligned_cols=100 Identities=27% Similarity=0.276 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||+|||+|.++..++.. .++++|+++.++..+..... ......+...+...++++.+.||+|+++. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAF-G 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEee-e
Confidence 5789999999999988887653 79999999988776654332 11123344455567778888999999975 4
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++..+...+|.++.++|+|||+|++..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 7777888999999999999999999874
No 54
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.08 E-value=1.2e-09 Score=111.36 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
.+.+|||||||+|.++..|+. .+|+++|+++.|+..+.. .+.+.+++.+.++.+ ...++ ..++||+|+|..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--
Confidence 378999999999998877753 279999999999887763 445556655545444 45554 357899999863
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++ +...++..+.++|+|||.|++.
T Consensus 118 ~~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 LA---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hh---CHHHHHHHHHHhcCCCCEEEEE
Confidence 32 4567889999999999999986
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.08 E-value=5.7e-10 Score=114.99 Aligned_cols=99 Identities=22% Similarity=0.417 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
+..++||||||.|+.+.+|+.+ .|+++|+|+..+..+. +.|.+.+++....+.+.....++ +.||+|++..+ +++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v-~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVV-FMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESS-GGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEE-ecc
Confidence 4679999999999999999987 8999999999888765 67888899877777776666665 57999998633 444
Q ss_pred ccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... ...++..|...|+|||++++.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 432 278999999999999999885
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.08 E-value=1.3e-09 Score=120.35 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=84.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC-----CCcE-EEEcCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG-----IPAI-SAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg-----l~~~-~~v~dae~LPfpd~SFDlV~Ss 538 (870)
++.+|||||||+|.++..|++. .|+|+|+++.|+..++.+.. ..+ .... +...+... .+++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAK-EALAALPPEVLPKFEANDLES---LSGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence 4679999999999999999875 79999999999998875433 221 1122 22333222 25789999998
Q ss_pred ccccccccCh-HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhh-ccc---ccccchhHHHHHHHHHhhccceEE
Q 002884 539 RCRVPWHIDG-GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAM-SNL---TVSMCWELVTIKMDKLNSAGFAIY 613 (870)
Q Consensus 539 ~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~-~~l---a~~mcW~~va~~~~~L~daGfaI~ 613 (870)
.+++|+..+. ..++..+.+ |.+||+++ +..+... .......+... ... .....+. .......++.+||.+.
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~-~~~~l~~~g~~~~g~~~~~r~y~~s-~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTL-YYDILKRIGELFPGPSKATRAYLHA-EADVERALKKAGWKVA 295 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcch-HHHHHHHHHhhcCCCCcCceeeeCC-HHHHHHHHHHCCCEEE
Confidence 7655554333 345555554 55666644 4333211 11211222111 111 1111112 3356778889999998
Q ss_pred EecCc
Q 002884 614 RKPTT 618 (870)
Q Consensus 614 rkgf~ 618 (870)
+..+.
T Consensus 296 ~~~~~ 300 (315)
T PLN02585 296 RREMT 300 (315)
T ss_pred EEEEe
Confidence 85543
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.05 E-value=2e-09 Score=111.48 Aligned_cols=143 Identities=24% Similarity=0.285 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||||||+|.++..|+.. .|+++|+++.|+..|+..... .+. ..+.+..++ ++..+++||+|++..+++|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d--~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD--LESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC--chhccCCcCEEEEcchhhc
Confidence 4679999999999999988765 799999999999988754433 333 223333332 5556788999999865445
Q ss_pred ccc-ChHHHHHHHHhhcCCCcEEEEEECCCcCchh---HHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEe
Q 002884 544 WHI-DGGKLLLELNRVLRPGGYFVWSATPVYQKLG---EDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRK 615 (870)
Q Consensus 544 w~~-D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~---El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rk 615 (870)
|.. +...++.++.+++++++++.+. +...... .+...|.... .....++.........+..+||.+.+.
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTFA--PYTPLLALLHWIGGLFPGPS-RTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEC--CccHHHHHHHHhccccCCcc-CCCCccccCHHHHHHHHHHCCCceEee
Confidence 442 2367888888887655544432 2111111 1111111111 111123333334566788889988774
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.04 E-value=3e-09 Score=107.84 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=72.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+|||||||+|.++..++.+ +|+++|+++.++..++... ...++..+.++.+....+++ +.||+|++...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~~~~~~-~~~D~v~~~~~- 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEAPIELP-GKADAIFIGGS- 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCchhhcC-cCCCEEEECCC-
Confidence 35789999999999998887653 8999999999988887433 33444444444443333443 57999998642
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. .....++..+.++|+|||+|++.
T Consensus 107 ~---~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 107 G---GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 23567899999999999999986
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.04 E-value=2.5e-09 Score=120.51 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=71.6
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC--CCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG--IPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg--l~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
..+|||||||+|.++..++.+ .|+++|+++.++..++........ .....++.+...-.++..+||+|+|+..
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPP- 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP- 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcC-
Confidence 469999999999999888764 899999999999888755443321 1223333332111234568999999854
Q ss_pred ccccc-----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHI-----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~-----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|... ....+|.++.++|+|||.|++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44321 12578999999999999999984
No 60
>PRK06202 hypothetical protein; Provisional
Probab=99.01 E-value=1.7e-09 Score=113.32 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc--------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE--------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|+. .+|+|+|+++.|+..|+... ...++ ...+.+...+++++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~--~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGV--TFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCC--eEEEEecccccccCCCccEEEE
Confidence 3567999999999998877763 27999999999988776432 22222 2333344567777889999999
Q ss_pred cccccccccCh--HHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG--GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~--~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+ +||..+. ..+|.++.|+++ |.+++.
T Consensus 136 ~~~-lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 136 NHF-LHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CCe-eecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 975 7766664 579999999998 555554
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.00 E-value=2.4e-09 Score=111.49 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=71.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccC--------CCCCCc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRL--------QFPRNV 531 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~L--------Pfpd~S 531 (870)
.++.+|||||||+|.++..|++. .|+|+|+++ |. .++ ..+...+.... ++.+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----------PIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----------CCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 45789999999999999888763 699999988 21 112 23344444443 366789
Q ss_pred eeEEEecccccccccCh-----------HHHHHHHHhhcCCCcEEEEEECCCcCchhHHH
Q 002884 532 FDLVHCARCRVPWHIDG-----------GKLLLELNRVLRPGGYFVWSATPVYQKLGEDV 580 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D~-----------~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~ 580 (870)
||+|+|+. +.+|..++ ..+|.++.|+|||||.|++. .+....+.++.
T Consensus 118 ~D~V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~-~~~~~~~~~~l 175 (209)
T PRK11188 118 VQVVMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK-VFQGEGFDEYL 175 (209)
T ss_pred CCEEecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE-EecCcCHHHHH
Confidence 99999974 35555332 35899999999999999997 34444444443
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.99 E-value=4.3e-09 Score=117.38 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
..+|||||||+|.++..++.+ .|+++|+++.++..++.... ..++...+...+.. ....+.||+|+|+.. +|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~--~~~~~~fDlIvsNPP-FH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVF--SDIKGRFDMIISNPP-FH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEcccc--cccCCCccEEEECCC-cc
Confidence 458999999999999888764 79999999999998875443 44555433333322 223578999999863 55
Q ss_pred ccc-----ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHI-----DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~-----D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.. ....++.++.++|||||.|++..
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 422 23788999999999999999874
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=7.2e-10 Score=114.96 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
..++|.|||||+|..+..|+++ .|+|+|-|+.|+..|. .+.++..+...+...+ -|...+|++++| .++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa-----~rlp~~~f~~aDl~~w-~p~~~~dllfaN-Avl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAA-----QRLPDATFEEADLRTW-KPEQPTDLLFAN-AVL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHH-----HhCCCCceecccHhhc-CCCCccchhhhh-hhh
Confidence 5789999999999999999886 8999999999887664 4555555545554444 356779999998 569
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
||.+|...+|..+...|.|||+|.+..
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEEC
Confidence 999999999999999999999999983
No 64
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=3e-09 Score=120.02 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC--CCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL--QFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L--Pfpd~SFDlV~Ss~ 539 (870)
.+..+||||||+|.++..|+.. .++|+|+++.++..+.. .+...++.++.++.++ ..+ ++++++||.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~-ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLK-QIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4679999999999999999864 89999999999988874 4556777776666553 332 57899999999975
Q ss_pred cccccccCh------HHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDG------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. .+|.... ..+|.++.|+|+|||.|.+.
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 3 7776433 57999999999999999997
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.99 E-value=5.4e-09 Score=105.29 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..++.... ..+....+...+....+ .++||+|+++...++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 4578999999999999888876 69999999999988875443 34443333333333322 4589999998542222
Q ss_pred ccC--------------------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 545 HID--------------------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 545 ~~D--------------------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
... ...+|.++.|+|||||.|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 110 2467999999999999999873
No 66
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.99 E-value=2.5e-09 Score=111.82 Aligned_cols=102 Identities=15% Similarity=-0.002 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHH------------HcCCCcEEEEcCcccCCCC-CCc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFAL------------ERGIPAISAVMGTKRLQFP-RNV 531 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~------------ergl~~~~~v~dae~LPfp-d~S 531 (870)
++.+|||+|||.|..+.+|+++ .|+|+|+|+..+..+..+... .++....+.+.+...++.. .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4679999999999999999987 999999999988764321100 0122233455555555532 357
Q ss_pred eeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 532 FDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 532 FDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
||+|+...+.+|...+. ..++..+.++|||||++++.
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99999865544443333 67999999999999976655
No 67
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.99 E-value=6e-10 Score=118.44 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHH----cCCCcEE-EEc-CcccCCCCCCceeEEEecc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALE----RGIPAIS-AVM-GTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~e----rgl~~~~-~v~-dae~LPfpd~SFDlV~Ss~ 539 (870)
+++|||+|||+|.++..|++. .|+|+|+++.|+..|+...+.. .++.... +.. +.+.+ .+.||+|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 478999999999999999875 9999999999998887542211 1110001 111 11222 23499999997
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. +++..|+..++..+.++|||||.+++++
T Consensus 167 v-leHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 167 V-LEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred H-HHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 5 7777899999999999999999999984
No 68
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.99 E-value=2.3e-09 Score=111.17 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ 526 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP 526 (870)
....+.+.+..+ .++.+|||||||+|.++..|.. ..++|+|+|+.|+..|+... ....+...+... |
T Consensus 30 ~~~~~~~~l~~~---~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~ 100 (204)
T TIGR03587 30 KLAMFARALNRL---PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-P 100 (204)
T ss_pred HHHHHHHHHHhc---CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-C
Confidence 344444444332 3467899999999998888865 37999999999887765321 122333444444 8
Q ss_pred CCCCceeEEEeccccccccc-ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~-D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+++++||+|+|+.++.|..+ +...++.+++|++ +++++++.
T Consensus 101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 89999999999865444432 2478999999998 56777764
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.99 E-value=3.6e-09 Score=119.57 Aligned_cols=97 Identities=22% Similarity=0.348 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..+++. .|+|+|+|+.++..|+.+. .++...+...+...+ +++||+|++..+ +
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l---~~~fD~Ivs~~~-~ 238 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL---NGQFDRIVSVGM-F 238 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc---CCCCCEEEEeCc-h
Confidence 46789999999999999988763 7999999999888776433 233333333343333 478999999754 5
Q ss_pred cccc--ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHI--DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~--D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++.. +...+|.++.|+|||||+|++..
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5543 34789999999999999999973
No 70
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.98 E-value=2.3e-09 Score=110.49 Aligned_cols=100 Identities=25% Similarity=0.421 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
...+++||+|||.|.++..|+.+ +++++|+++..+..|+.+.+ +.+.+.++...-.-..|.+.||+|+++.. ++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~---~~~~V~~~~~dvp~~~P~~~FDLIV~SEV-lY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA---GLPHVEWIQADVPEFWPEGRFDLIVLSEV-LY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT---T-SSEEEEES-TTT---SS-EEEEEEES--GG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC---CCCCeEEEECcCCCCCCCCCeeEEEEehH-hH
Confidence 45689999999999999999997 99999999998777664332 34555555554333467899999999875 55
Q ss_pred cccC---hHHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHID---GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~D---~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|..+ ...++..+...|+|||.|++..
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5543 3678999999999999999974
No 71
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.98 E-value=2.1e-09 Score=111.68 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~~alh 543 (870)
...-|||||||+|..+..|.+. .++|+||||.|++.|+.+. +...+..+++ +-+||..++||.|++. ++++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e-----~egdlil~DMG~GlpfrpGtFDg~ISI-SAvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERE-----LEGDLILCDMGEGLPFRPGTFDGVISI-SAVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhh-----hhcCeeeeecCCCCCCCCCccceEEEe-eeee
Confidence 4788999999999999998775 8999999999999887422 2223344553 8899999999999997 5689
Q ss_pred cccC-------h----HHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHID-------G----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~D-------~----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|.-+ + ..++..++.+|++|+..++..
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 8621 1 356788999999999999973
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.97 E-value=1.2e-08 Score=106.72 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||+|||+|.++..++.. .++|+|+++.++..+.. .+...++....++.+...-++++++||+|+|+.-.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence 3568999999999999888864 89999999999988774 444556654444444322256678999999963211
Q ss_pred ccc------cC-------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWH------ID-------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~------~D-------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .+ ...++.++.++|+|||.+++.
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 100 00 135788999999999999996
No 73
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.97 E-value=3.3e-09 Score=115.50 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=80.1
Q ss_pred HHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEE--cCcccCC
Q 002884 453 DFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER-GIPAISAV--MGTKRLQ 526 (870)
Q Consensus 453 d~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v--~dae~LP 526 (870)
+++...++.+ .+++|||||||.|.++-.|+.+ .|+|+|.++....+. .++++. |.....+. .+.+.||
T Consensus 105 ~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF--~~i~~~lg~~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 105 DRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQF--EAIKHFLGQDPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHH--HHHHHHhCCCccEEEcCcchhhcc
Confidence 4455555433 5889999999999999888875 799999887654432 233322 23333333 3678888
Q ss_pred CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .+.||+|+|..+ +-+..++-..|.++...|+|||.|++.+
T Consensus 179 ~-~~~FDtVF~MGV-LYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 179 N-LGAFDTVFSMGV-LYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred c-cCCcCEEEEeee-hhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 8 789999999753 4345788999999999999999999874
No 74
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.96 E-value=1.7e-08 Score=103.06 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cC-CCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RL-QFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~L-Pfpd~SFDlV~Ss~~a 541 (870)
++.+|||||||+|.++..|+.. .++|+|+++.++..+. .+++. ....+.. .+ ++++++||+|+|+.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-----~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~- 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-----ARGVN--VIQGDLDEGLEAFPDKSFDYVILSQT- 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-----HcCCe--EEEEEhhhcccccCCCCcCEEEEhhH-
Confidence 4679999999999999888653 6899999998776553 34442 2333332 24 477889999999864
Q ss_pred cccccChHHHHHHHHhhcCC
Q 002884 542 VPWHIDGGKLLLELNRVLRP 561 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKP 561 (870)
+||..++..+|+++.|++++
T Consensus 85 l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred hHcCcCHHHHHHHHHHhCCe
Confidence 78888899999999888764
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.96 E-value=5.4e-09 Score=107.92 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCC-CCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfp-d~SFDlV~Ss~~al 542 (870)
.+.+|||+|||+|.++..++.. .++++|+++.++..++.... ..++. ..+...+...++.. .++||+|+++.+ +
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~-l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV-L 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhH-H
Confidence 3679999999999998888654 79999999998887764433 33432 33333444445543 478999999864 7
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++..++..+|.++.++|+|||.++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 777888999999999999999999874
No 76
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.96 E-value=7.5e-09 Score=110.16 Aligned_cols=92 Identities=24% Similarity=0.270 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..++.. .|+|+|+++.++..|+.+ +...++..... ++..+.+||+|+++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~------~~~~~~~fD~Vvani~-~- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY------LPQGDLKADVIVANIL-A- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE------EccCCCCcCEEEEcCc-H-
Confidence 5789999999999888777654 599999999999888754 34444421111 1222237999999742 1
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.....++.++.++|||||+|++++
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 224678999999999999999984
No 77
>PRK14967 putative methyltransferase; Provisional
Probab=98.95 E-value=1.6e-08 Score=105.62 Aligned_cols=100 Identities=21% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
++.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...++...+...+... .+++++||+|+++.-.++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN-ALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4679999999999998887763 799999999998877643 34445433333333322 356778999999742111
Q ss_pred cccC--------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 544 WHID--------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 544 w~~D--------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.... ...++.++.++|||||.|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1110 245788899999999999986
No 78
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.95 E-value=6.9e-09 Score=108.21 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC-CCCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ-FPRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP-fpd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..+... .|+++|+++.++..+..... ..+....+...+...++ ...+.||+|+++.+ +
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~-l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM-L 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhhH-h
Confidence 35779999999999998888765 79999999998887764433 23433333344444443 34578999999864 6
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++..++..+|..+.++|+|||.|+++.
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 666788999999999999999999884
No 79
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.6e-09 Score=112.96 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC-CceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR-NVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd-~SFDlV~Ss~~al 542 (870)
++++|||+|||+|.++...++. .|+|+|++|..+..|+ ..++..+++..........+..+. +.||+|++|..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL-- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL-- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEEEehhh--
Confidence 6899999999999877665543 7999999999888877 456666665322222222333444 58999999842
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..-...+..++.+.|||||+|++|+
T Consensus 239 --A~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 239 --AEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --HHHHHHHHHHHHHHcCCCceEEEEe
Confidence 1223688899999999999999995
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.2e-08 Score=111.13 Aligned_cols=130 Identities=20% Similarity=0.326 Sum_probs=91.2
Q ss_pred CCeeecCCCCccccccHHH-HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHH
Q 002884 432 GEIITFPGGGTQFIHGALH-YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQ 506 (870)
Q Consensus 432 Ge~~~FPgggt~F~~gA~~-Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq 506 (870)
+..+.|-.....|+++.-. =.+.|.+.++. ....+|||+|||.|.++..|++. .++-+|++...+..|+..
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N 201 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN 201 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh
Confidence 4456665555667766533 33445565554 23459999999999999999875 899999999888888754
Q ss_pred HHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccccCh-------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 507 FALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG-------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 507 ~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
. ...++.+..+..+..-.+..+ .||+|+||. ++|... ..++.+..+.|++||.|++...
T Consensus 202 l-~~N~~~~~~v~~s~~~~~v~~-kfd~IisNP---Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 202 L-AANGVENTEVWASNLYEPVEG-KFDLIISNP---PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred H-HHcCCCccEEEEecccccccc-cccEEEeCC---CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4 445555533444444445555 899999996 444332 3789999999999999999843
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.93 E-value=6.8e-09 Score=107.86 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..|+. .+...++.++.++.++ .........||+|++..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~-~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAER-RLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 46789999999999999888764 39999999999988874 4455566655555543 33333346899999864
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ . ..+...+.+.|+|||+|++.
T Consensus 155 ~-~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 A-G------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred C-c------ccccHHHHHhcCcCcEEEEE
Confidence 2 2 23446688999999999986
No 82
>PRK04266 fibrillarin; Provisional
Probab=98.93 E-value=1.7e-08 Score=106.52 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc----CCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR----LQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~----LPfpd~SFDlV~S 537 (870)
.++.+|||+|||+|.++..|+.. .|+++|+++.|+.... +.++.+ ........+... .+++ .+||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 46789999999999999988874 6999999999988665 344433 122333333322 1233 56999997
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .+| ....+|.++.|+|||||.|+++
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEE
Confidence 521 111 1245689999999999999996
No 83
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.93 E-value=2.8e-09 Score=109.42 Aligned_cols=91 Identities=25% Similarity=0.376 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCC-CCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQ-FPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LP-fpd~SFDlV~Ss~~a 541 (870)
++.+|||||||.|.+..+|.+. ...|+++++.. +..+..+|++. ...+. ..|+ |++++||.|+++.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~-----v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsqt- 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDN-----VAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQT- 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHH-----HHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHhH-
Confidence 5899999999999999999874 67899998874 44566788864 33332 4554 99999999999864
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++...++..+|.|+.|+ |...+++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEE
Confidence 88788899999999777 6677777
No 84
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.92 E-value=8.8e-09 Score=105.32 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cc-cCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TK-RLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae-~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|.++..++. ..|+++|+++.++..++. .+...++..+.++.+ .. .++.....+|.|+...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR-NCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 4578999999999999887763 389999999999988874 344455554444443 32 2332223467765421
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..+...++.++.++|+|||+|++..
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2345789999999999999999983
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.92 E-value=9.2e-09 Score=106.40 Aligned_cols=95 Identities=20% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc-CcccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVM-GTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~-dae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+. ..|+++|+++.++..|+.++ ...++. ...++. +.........+||+|++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 4578999999999998877764 37999999999988877433 344543 233433 443333345789999997
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. +++ +..++.++|+|||+|++.
T Consensus 150 ~~-~~~------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 150 AA-AST------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred cC-cch------hhHHHHHhcCcCcEEEEE
Confidence 43 332 335788999999999986
No 86
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=5e-10 Score=116.86 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=92.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cCC-CCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RLQ-FPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~LP-fpd~SFDlV~Ss~~al 542 (870)
+.+++||+|||||.++..|... +++|+|||.+|+.. |.++|+--...+.+.. -++ ...+.||+|++..+ +
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~k-----A~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAK-----AHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-L 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHH-----HHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-H
Confidence 4889999999999999999876 89999999998754 4456653333333322 233 45678999999864 8
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
.|.-+++.++.-+...|+|||.|.||+-....... .....-..++|. -......+...||.+.+
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f~l~ps~RyAH~-----~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---FVLGPSQRYAHS-----ESYVRALLAASGLEVIA 262 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---eecchhhhhccc-----hHHHHHHHHhcCceEEE
Confidence 88888999999999999999999999532221100 011112223332 11345567788888877
No 87
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.91 E-value=1.8e-08 Score=109.87 Aligned_cols=101 Identities=16% Similarity=0.233 Sum_probs=72.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~LPfpd~SFDlV~Ss~ 539 (870)
.+..+|||||||+|.++..++++ +++++|+ |.++..+. +.+.+.++. .+.++.+ ....+++. +|+|+++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 45689999999999999888765 6999998 67777665 344555553 3334443 34455654 69998876
Q ss_pred cccccccCh-HHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 CRVPWHIDG-GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 ~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
++.+|..+. ..+|++++++|||||.|++...
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 534443332 6799999999999999998854
No 88
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.89 E-value=8.3e-09 Score=112.91 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=79.3
Q ss_pred CccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc--C-CEEEEeCChhhHHHHHHHHHHHcCCCcEE
Q 002884 441 GTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE--R-DVLTMSFAPKDEHDAQIQFALERGIPAIS 517 (870)
Q Consensus 441 gt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~--r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~ 517 (870)
|..|..|.+.--....+.+..+ ..++.+|||+|||+|.++...+. . .|+|+|++|..+..|+ +.+...++....
T Consensus 137 g~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~ 213 (295)
T PF06325_consen 137 GMAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRI 213 (295)
T ss_dssp TSSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCE
T ss_pred CCcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeE
Confidence 4567777655444444444333 23578999999999976644443 3 7999999999888877 456666766544
Q ss_pred EEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 518 AVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 518 ~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+... .......||+|++|. .. .-+..++..+.++|+|||+|++|+
T Consensus 214 ~v~~~--~~~~~~~~dlvvANI---~~-~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 214 EVSLS--EDLVEGKFDLVVANI---LA-DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EESCT--SCTCCS-EEEEEEES----H-HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred EEEEe--cccccccCCEEEECC---CH-HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 44322 223358899999984 21 224678888999999999999995
No 89
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=1.4e-09 Score=114.33 Aligned_cols=91 Identities=23% Similarity=0.349 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-----EcCcccCCCC--CCceeEEEec
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISA-----VMGTKRLQFP--RNVFDLVHCA 538 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-----v~dae~LPfp--d~SFDlV~Ss 538 (870)
.+.++|+|||+|..++.+++. +|+|+|+++.|+..|. + +.++... ...++..++. ++|.|+|+|.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~-----k-~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK-----K-HPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh-----c-CCCcccccCCccccccccccccCCCcceeeehhh
Confidence 448999999999777777775 9999999999886544 2 2222221 1122334444 8999999999
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.| +||. |...++++++|+||+.|-++
T Consensus 108 qa-~HWF-dle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 108 QA-VHWF-DLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred hh-HHhh-chHHHHHHHHHHcCCCCCEE
Confidence 87 9997 68999999999999988443
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=98.88 E-value=3.8e-08 Score=98.30 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC---cEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP---AISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~---~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+|||+|||+|.++..|+.. +|+++|+++.++..++... ...+.. ......+.. -++.+..||+|+++...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~-~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLF-EPFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEecccc-ccccccCceEEEECCCc
Confidence 5679999999999999888765 9999999999988776443 333433 233333332 24556689999987432
Q ss_pred cccc----------------cC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWH----------------ID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~----------------~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++.. .+ ...++.++.++|||||.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2200 01 245799999999999999886
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.86 E-value=1.8e-08 Score=104.95 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++.. ....++.++.++.++ ...+.+.+.||+|++..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~-l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT-LKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 46789999999999998777642 799999999999888744 444566555555543 44444567899999874
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ++ .+...+.+.|||||.|++.
T Consensus 154 ~-~~------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 A-GP------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred C-cc------cchHHHHHhhCCCcEEEEE
Confidence 2 33 2334677899999999986
No 92
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=1e-08 Score=107.63 Aligned_cols=98 Identities=15% Similarity=0.031 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC----------------cEEEEcCcccCCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP----------------AISAVMGTKRLQFP 528 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~----------------~~~~v~dae~LPfp 528 (870)
++.+|||+|||.|..+..|+++ .|+|+|+|+..+..+. .++++. +.+.+.+...++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4679999999999999999987 9999999999777643 233322 23344455555432
Q ss_pred -CCceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 529 -RNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 529 -d~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
...||+|+...+.++...+. ..++..+.++|+|||++++.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35799999765434433332 78999999999999975543
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.85 E-value=3e-08 Score=109.71 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=76.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc--CCEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccCCCCCCceeEEEecccc-
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE--RDVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRLQFPRNVFDLVHCARCR- 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~--r~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~LPfpd~SFDlV~Ss~~a- 541 (870)
.++.+|||+|||+|.++..++. ..++|+|+++.|+..++.+ +...++.. .+...+...+|+++++||+|+++.-.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 4678999999999988765543 4899999999999887754 44455554 34455677889888899999996210
Q ss_pred ----cccc--cC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 ----VPWH--ID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 ----lhw~--~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..-+ .+ ...+|.++.|+|||||++++..
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 1100 11 3689999999999999999874
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.85 E-value=3.1e-08 Score=101.65 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcC-ccc-CCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGI-PAISAVMG-TKR-LQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~d-ae~-LPfpd~SFDlV~S 537 (870)
.++.+|||+|||+|.++..++. .+|+++|+++.++..++.. +...++ ..+.++.+ ... ++...+.||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4678999999999998876643 2799999999998887744 444452 33444433 332 3433468999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.. ...+...+|.++.++|||||+|++.
T Consensus 118 ~~----~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 118 GG----GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CC----CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 53 1245688999999999999999986
No 95
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.84 E-value=3.7e-08 Score=107.87 Aligned_cols=116 Identities=10% Similarity=0.138 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCccc-CCCCCCc----eeEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKR-LQFPRNV----FDLV 535 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~-LPfpd~S----FDlV 535 (870)
++.+|||+|||+|..+..|+++ .|+++|+|+.|+..+..+..... ++.......+... ++++... ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4578999999999988877643 79999999999998876554332 2322233344332 4444332 2333
Q ss_pred Eeccccccccc--ChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHH
Q 002884 536 HCARCRVPWHI--DGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWN 584 (870)
Q Consensus 536 ~Ss~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~ 584 (870)
++. ..+++.. +...+|++++++|+|||.|++. .........+..++.
T Consensus 143 ~~g-s~~~~~~~~e~~~~L~~i~~~L~pgG~~lig-~d~~~~~~~~~~aY~ 191 (301)
T TIGR03438 143 FPG-STIGNFTPEEAVAFLRRIRQLLGPGGGLLIG-VDLVKDPAVLEAAYN 191 (301)
T ss_pred Eec-ccccCCCHHHHHHHHHHHHHhcCCCCEEEEe-ccCCCCHHHHHHhhc
Confidence 333 2344433 2367899999999999999997 333333333444443
No 96
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.84 E-value=9.3e-10 Score=96.81 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=66.4
Q ss_pred ccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccc---eeccccccccCCCCccchhhhhcccccccCCcC
Q 002884 726 MDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFG---IYHDWCESFSTYPRSYDLLHADHLFSQLKNRCK 801 (870)
Q Consensus 726 mDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig---~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~ 801 (870)
||+|||.|-+++.|.+.+. .+|+-+|.. ..+..+.++.... +.+.=.+.++.-+++||+|++.++|... .+
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 7999999999999998832 255555544 5666666665433 4444456653334999999999999887 46
Q ss_pred hhhHHHhhhhcccCCcEEEE
Q 002884 802 LVPVMAEVDRIVRPGGKLIV 821 (870)
Q Consensus 802 ~~~vl~EmDRILRPgG~~ii 821 (870)
...+|.|+.|+|||||++||
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 88999999999999999997
No 97
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.84 E-value=5e-09 Score=108.77 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
+...|.|+|||.+.++..+... .|...|+.+. ...+..++...+|++++++|+|++..+++ -
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLM--G 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLM--G 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----S
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhh--C
Confidence 4579999999999999888754 7999998653 12356788899999999999999865433 3
Q ss_pred cChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecCchhH
Q 002884 546 IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPTTNEC 621 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf~~sC 621 (870)
.+...+|.|++|+|||||.|+|+.. ...+.. +..-...+...||.+..+...|.+
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV---------~SRf~~------------~~~F~~~~~~~GF~~~~~d~~n~~ 189 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEV---------KSRFEN------------VKQFIKALKKLGFKLKSKDESNKH 189 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEE---------GGG-S-------------HHHHHHHHHCTTEEEEEEE--STT
T ss_pred CCcHHHHHHHHheeccCcEEEEEEe---------cccCcC------------HHHHHHHHHHCCCeEEecccCCCe
Confidence 6789999999999999999999821 111111 222334678889999887666543
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.83 E-value=2.3e-08 Score=101.52 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=91.7
Q ss_pred ccccH-HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc--E
Q 002884 444 FIHGA-LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA--I 516 (870)
Q Consensus 444 F~~gA-~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~--~ 516 (870)
|...+ ...++++...+..........+|||+|||.|.+...|++. .++|+|.|+..+..|+ ..|...+.++ .
T Consensus 43 Fg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~ 121 (227)
T KOG1271|consen 43 FGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIR 121 (227)
T ss_pred cCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCccee
Confidence 44444 3455666655542212333449999999999999999975 5999999999988877 6888888874 3
Q ss_pred EEEcCcccCCCCCCceeEEEecc--cccccccC-----hHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHH
Q 002884 517 SAVMGTKRLQFPRNVFDLVHCAR--CRVPWHID-----GGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIW 583 (870)
Q Consensus 517 ~~v~dae~LPfpd~SFDlV~Ss~--~alhw~~D-----~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w 583 (870)
+.+.+...-.+..+.||+|+--. -++..+++ +..++.-+.++|+|||+|+|+. .+.+..|+.+.+
T Consensus 122 f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f 193 (227)
T KOG1271|consen 122 FQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEF 193 (227)
T ss_pred EEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHH
Confidence 34444433356677899887521 11223322 2457888999999999999974 445555555444
No 99
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.80 E-value=3.2e-08 Score=85.89 Aligned_cols=97 Identities=23% Similarity=0.294 Sum_probs=69.4
Q ss_pred EEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCC-CCCCceeEEEeccccccc
Q 002884 470 VSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQ-FPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LP-fpd~SFDlV~Ss~~alhw 544 (870)
+|||+|||.|.++..++. ..++++|+++..+..++. .....+.....++ .+..... .....||+|+++.+ +++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcccccceEEEEcChhhhccccCCceEEEEEccc-eee
Confidence 489999999999888876 389999999987766652 1122222223333 3333333 24578999999864 554
Q ss_pred -ccChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 -HIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 -~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
......++..+.++|+|||+++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 556689999999999999999986
No 100
>PLN03075 nicotianamine synthase; Provisional
Probab=98.79 E-value=4.6e-08 Score=106.95 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEE-cCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFALERGIP-AISAV-MGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v-~dae~LPfpd~SFDlV~Ss 538 (870)
.+++|||||||.|.++..++. ..++++|+++.++..|+..+....++. .+.+. .+...++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 578999999998855433321 269999999999998885443435553 24444 3444443234679999998
Q ss_pred ccccccc-cChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWH-IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++++|. .+...+|..+.++|+|||+|++.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 656664 67799999999999999999997
No 101
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.78 E-value=4.5e-08 Score=97.60 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=61.8
Q ss_pred EEEeCChhhHHHHHHHHHHHc--CCCc-EEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 491 LTMSFAPKDEHDAQIQFALER--GIPA-ISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 491 tgVDiSp~ml~~A~vq~A~er--gl~~-~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
+|+|+|+.|+..|+.+..... +... .+.+.+...+|+++++||+|+++++ +|+..+...+|++++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999998864432211 1223 3445567899999999999999864 78888999999999999999999998
Q ss_pred EEC
Q 002884 568 SAT 570 (870)
Q Consensus 568 S~~ 570 (870)
...
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 753
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.77 E-value=1.4e-08 Score=94.15 Aligned_cols=100 Identities=24% Similarity=0.328 Sum_probs=69.2
Q ss_pred CCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCC-C-cEEEEcCcccC--CCCCCceeEEEeccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGI-P-AISAVMGTKRL--QFPRNVFDLVHCARC 540 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl-~-~~~~v~dae~L--Pfpd~SFDlV~Ss~~ 540 (870)
+.+|||+|||+|.++..++. ..++++|+++..+..++..+.. .++ . ..+...+...+ +++++.||+|+++.-
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 35899999999998877764 4899999999987777644443 333 2 33344444444 377899999999843
Q ss_pred cccccc-------ChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHI-------DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~-------D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+.... ....++.++.++|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 222111 1257899999999999999987
No 103
>PTZ00146 fibrillarin; Provisional
Probab=98.77 E-value=5.7e-08 Score=106.04 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCccc---CCCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKR---LQFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~---LPfpd~SFDlV~S 537 (870)
.++.+|||||||+|.++..|++. .|+++|+++.|+.... ..+..+ ..+..++.+... ++++..+||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl-~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT-NMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH-HHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 46789999999999999988874 6999999987654322 344333 122333444321 2223468999999
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... . ..+...++.++.++|||||+|++.
T Consensus 209 Dva-~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA-Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC-C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 742 2 223356777999999999999996
No 104
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.76 E-value=8.8e-08 Score=102.46 Aligned_cols=179 Identities=17% Similarity=0.231 Sum_probs=111.4
Q ss_pred cCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC
Q 002884 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP 514 (870)
Q Consensus 437 FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~ 514 (870)
+-|.|.||--...++..+|...-..........++||||+|.|..+..|+.. .|++.++|+.|.. ...++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~-----rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW-----RLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH-----HHHhCCCe
Confidence 3456777776667666665532111111224678999999999999999885 8999999999743 34457763
Q ss_pred cEEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHH-HHHhhc---ccc
Q 002884 515 AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVE-IWNAMS---NLT 590 (870)
Q Consensus 515 ~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~-~w~~~~---~la 590 (870)
. .+...+.-.+..||+|.|.+ ++.-+.++..+|++|++.|+|+|+++++....+...-|.-. .+..-. .+.
T Consensus 139 v----l~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 139 V----LDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred E----EehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 2 22222332356799999975 47778889999999999999999999885433322222111 111100 111
Q ss_pred cccchhHHH-HHHHHHhhccceEEEecCchhHHhhhcCCCCCCCCCCC
Q 002884 591 VSMCWELVT-IKMDKLNSAGFAIYRKPTTNECYEKRNQMTPPMCQNEE 637 (870)
Q Consensus 591 ~~mcW~~va-~~~~~L~daGfaI~rkgf~~sCy~~r~~~~pplC~~d~ 637 (870)
..+|+.-. ....-+.-+||.+.+=. +.|-+|..|.
T Consensus 214 -g~~~E~~v~~l~~v~~p~GF~v~~~t-----------r~PYLcEGD~ 249 (265)
T PF05219_consen 214 -GATFEEQVSSLVNVFEPAGFEVERWT-----------RLPYLCEGDL 249 (265)
T ss_pred -CCcHHHHHHHHHHHHHhcCCEEEEEe-----------ccCccccCcc
Confidence 13343321 22244677899987722 3488997543
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.76 E-value=7.9e-08 Score=99.40 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC-CCCceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF-PRNVFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf-pd~SFDlV~Ss~~al 542 (870)
.++.+|||||||+|.++..|+.. .|+++|+++.++..+...+. ..++..+.++.+.....+ +.+.||+|++..+ +
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~ 154 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLK-QLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-A 154 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHH-HCCCCceEEEECCcccCCCcCCCcCEEEEccC-c
Confidence 45789999999999988877654 79999999999888774443 345554444544322222 3478999998742 3
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ .+...+.+.|+|||.|++..
T Consensus 155 ~------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 155 P------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred h------hhhHHHHHhcCCCcEEEEEE
Confidence 3 23456789999999999873
No 106
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.75 E-value=2.6e-08 Score=105.73 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
.....|.|+|||-+.++.. ....|+.+|+.+. .-.+..+++.++|+++++.|++++.++ ...
T Consensus 179 ~~~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMg 240 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMG 240 (325)
T ss_pred cCceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhc
Confidence 3467899999999988761 1137999988653 224567888899999999999998543 234
Q ss_pred cChHHHHHHHHhhcCCCcEEEEE
Q 002884 546 IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 ~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+...++.|++|+|||||.|+|+
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEE
Confidence 68899999999999999999997
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.74 E-value=8.5e-08 Score=97.47 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--------CCCCce
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--------FPRNVF 532 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--------fpd~SF 532 (870)
.++.+|||||||+|.++..++.+ .|+++|+++.+ ...+ ..+...+....+ ++.++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~--i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIEN--VDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCC--ceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 46789999999999988777643 59999999853 1112 222233333222 456789
Q ss_pred eEEEecccc---cccccC-------hHHHHHHHHhhcCCCcEEEEE
Q 002884 533 DLVHCARCR---VPWHID-------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 533 DlV~Ss~~a---lhw~~D-------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
|+|++..+. -+|..+ ...+|..+.++|+|||+|++.
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999985320 112222 257899999999999999996
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.73 E-value=9.8e-08 Score=101.77 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.+..+|||+|||+|.++..|+.. .|+++|+++.++..++.... ......+.++.++...+++.++||+|+|+.-.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 35679999999999998888753 79999999999888775443 22223334444332234446789999996321
Q ss_pred ccc------------c-------------cChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPW------------H-------------IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw------------~-------------~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. + .....++.++.++|+|||++++.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 110 0 00145778888999999999996
No 109
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.72 E-value=1e-07 Score=103.76 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
+..+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++. .+.++.++..-++++++||+|+|+.-.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 3568999999999999888863 79999999999988874 45555653 344444432223456689999997211
Q ss_pred c------------cccc--------C----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 V------------PWHI--------D----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 l------------hw~~--------D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+ ++.+ + ...++.++.++|+|||+|++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 0000 0 1467888999999999999873
No 110
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=1.2e-07 Score=108.55 Aligned_cols=104 Identities=16% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC--CCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP--fpd~SFDlV~Ss~ 539 (870)
.++.+|||+|||+|..+..++.. .|+++|+++.++..++. .+...|+...+...+...++ ++.++||+|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~-n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRE-NLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 46789999999999988887753 79999999999988874 44555665444444444443 3467899999532
Q ss_pred -cc----------cccccCh----------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 540 -CR----------VPWHIDG----------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 540 -~a----------lhw~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|. +.|.... ..+|..+.++|||||+|++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11 1122111 3689999999999999999854
No 111
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.67 E-value=4.1e-08 Score=106.97 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcC------CCcEEEEcCc------ccCCCCCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERG------IPAISAVMGT------KRLQFPRN 530 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~erg------l~~~~~v~da------e~LPfpd~ 530 (870)
.++..+||+|||-|.-+.....+ .++|+||+...+..|+.+.-.-++ .++.++..+. ..+++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35789999999999766555443 899999999988888765432211 2334444442 45677777
Q ss_pred ceeEEEeccccccccc----ChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 531 VFDLVHCARCRVPWHI----DGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~----D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.||+|-|-+| +|+.- ....+|+.+.+.|||||+|+.+.|.
T Consensus 196 ~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 196 RFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred Ccceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 7999999865 78762 2368999999999999999998443
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.65 E-value=1.9e-07 Score=99.82 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC--CCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL--QFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L--Pfpd~SFDlV~Ss~ 539 (870)
...+|||||||+|.++..|+.+ .|++|++.+.+...|+...+....-..+.++.++ ..+ +....+||+|+||.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 4789999999999999999876 8999999999998888666653333344444443 222 23345799999984
Q ss_pred cccccc-----------------cChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWH-----------------IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~-----------------~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
=.+.-. -+...+++-+.++|||||.|.+.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 211100 12357889999999999999997
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=2.2e-07 Score=102.29 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEeccccc-
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCARCRV- 542 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~~al- 542 (870)
.+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++. .+.++.++..-+++.++||+|+|+.-.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 68999999999999888753 79999999999998874 44555553 3444444321234456899999973111
Q ss_pred -----------cccc--------C----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 -----------PWHI--------D----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 -----------hw~~--------D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++.+ + ...++.++.++|+|||+|++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 0 1467899999999999999973
No 114
>PRK00811 spermidine synthase; Provisional
Probab=98.63 E-value=4.3e-07 Score=98.86 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-C---CCcEEE-EcCc-ccCCCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-G---IPAISA-VMGT-KRLQFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-g---l~~~~~-v~da-e~LPfpd~SFDlV~ 536 (870)
..++||+||||.|.+++.++++ +|+++|+++.++..|+..+..-. + -+.+.+ +.+. .-+....+.||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999988765 79999999999888875443211 1 233333 3343 22344567899999
Q ss_pred ecccccccccC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. .-++... ...++..+.++|+|||+|++.
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 863 2344322 157789999999999999986
No 115
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.63 E-value=2.5e-07 Score=100.46 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=70.7
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccCCCCCCceeEEEeccccc-
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRLQFPRNVFDLVHCARCRV- 542 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~LPfpd~SFDlV~Ss~~al- 542 (870)
.+|||+|||+|.++..|+.. .|+++|+++.++..|+. .+...++.. +.++.++..-+++...||+|+|+.-.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 68999999999998888753 79999999999988874 444455542 444544322245555899999973111
Q ss_pred -----------cccc------------ChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 -----------PWHI------------DGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 -----------hw~~------------D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|.+ ....++.++.++|+|||+|++..
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1111 12467888999999999999873
No 116
>PRK04457 spermidine synthase; Provisional
Probab=98.63 E-value=2.3e-07 Score=99.89 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~da-e~LPfpd~SFDlV~Ss~ 539 (870)
..+.+|||||||+|.++..|+.. .|+++|+++.++..|+..+......+.+.++ .+. .-+.-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35679999999999999888653 7999999999888777544322212333334 333 22332246799999852
Q ss_pred cccccc-----cChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWH-----IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~-----~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++-. .....++.++.++|+|||+|++.
T Consensus 145 --~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 --FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred --CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2211 11268999999999999999986
No 117
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=1.8e-07 Score=107.46 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=76.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC----CCCCceeE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ----FPRNVFDL 534 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP----fpd~SFDl 534 (870)
..++.+|||+|||+|..+..|+.. .|+++|+++.++..++. .+...|+..+.++. +...++ +..++||.
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE-NAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH-HHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 346789999999999988777652 69999999999988774 45556776544444 445554 45678999
Q ss_pred EEec-c----cccccccC----------------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 535 VHCA-R----CRVPWHID----------------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 535 V~Ss-~----~alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|++. . ..++.+++ ...+|.++.++|||||+|++++..
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9962 1 12332222 247799999999999999998543
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.62 E-value=1.5e-07 Score=107.67 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEE-Ec-CcccCCC--CCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISA-VM-GTKRLQF--PRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~-dae~LPf--pd~SFDlV~S 537 (870)
.++.+|||+|||+|..+..++. ..|+++|+++.++..++. .+...|+..... .. +...+++ +.++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 4678999999999988877765 379999999999988874 445566653221 22 2233333 5678999985
Q ss_pred ----c-ccccccccC----------------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 538 ----A-RCRVPWHID----------------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 538 ----s-~~alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ ...++-+++ ...+|.++.++|||||.|++++..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2 122322222 146899999999999999999543
No 119
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.59 E-value=4.2e-07 Score=103.60 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=68.0
Q ss_pred CCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEeccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss~~al 542 (870)
..+|||||||+|.++..|+. ..|+++|+|+.++..|+.+ +...+....+...+.....++ .+.||+|+|+.-.+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 46999999999999887764 3799999999999988754 444555333333343222222 45799999975322
Q ss_pred ccc--------------------cCh----HHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWH--------------------IDG----GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~--------------------~D~----~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.-. .+. ..++..+.+.|+|||.+++.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 110 011 25667778899999999886
No 120
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.57 E-value=1.9e-07 Score=103.85 Aligned_cols=103 Identities=17% Similarity=0.318 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHc----------CCCcEEEEcCc------ccCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALER----------GIPAISAVMGT------KRLQF 527 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~er----------gl~~~~~v~da------e~LPf 527 (870)
++.+|||||||-|.-....... .++|+|++...+.+|..+...-. ...+.+...+. ..++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999988755555443 89999999999999887662211 12233334432 12233
Q ss_pred CCCceeEEEecccccccccCh----HHHHHHHHhhcCCCcEEEEEEC
Q 002884 528 PRNVFDLVHCARCRVPWHIDG----GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 528 pd~SFDlV~Ss~~alhw~~D~----~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
....||+|-|-++ +|+.-.. ..+|..+...|||||+|+.+.+
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3459999999764 8876332 5789999999999999999843
No 121
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.56 E-value=3.1e-07 Score=98.87 Aligned_cols=105 Identities=14% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEec-
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCA- 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss- 538 (870)
.++.+|||+|||+|..+..|+.. .|+++|+++.++..++.. +...++..+..+. +...++...+.||+|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n-~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIAN-INRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHH-HHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 46789999999999988777642 799999999999887744 4455665544443 445555555679999862
Q ss_pred ccc----cc--------cccC--------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCR----VP--------WHID--------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~a----lh--------w~~D--------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
.|. +. |... ...+|..+.++|||||+|++++..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 111 11 1111 135899999999999999998543
No 122
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=2.9e-07 Score=105.83 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=74.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcCcccCC-CCCCceeEEEe
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISA-VMGTKRLQ-FPRNVFDLVHC 537 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~dae~LP-fpd~SFDlV~S 537 (870)
..++.+|||+|||+|..+..++. ..|+++|+++.++..+.. .+...|+..+.+ ..+...++ +..++||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~-n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK-HAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 34678999999999987776664 379999999999988874 455567765434 34455555 45678999996
Q ss_pred c-cc----ccccccC----------------hHHHHHHHHhhcCCCcEEEEEECC
Q 002884 538 A-RC----RVPWHID----------------GGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 538 s-~~----alhw~~D----------------~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. .| .+.-+++ ...+|..+.++|||||++++++..
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 11 1111111 145688999999999999998543
No 123
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.54 E-value=3.4e-07 Score=96.88 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHH------------HHHcCCCcEEEEcCcccCCCC---C
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQF------------ALERGIPAISAVMGTKRLQFP---R 529 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~------------A~ergl~~~~~v~dae~LPfp---d 529 (870)
++.+||+.|||.|.-+.+|++. .|+|+|+|+..+..+..+. ...++..+.+.+.|...++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4679999999999999999986 9999999999777654321 012244455566666666532 2
Q ss_pred CceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.||+|+-..++++..++. ..++..+.++|+|||.+++.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5799998654434443443 78999999999999998876
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.54 E-value=6.1e-07 Score=99.55 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|++. .|+++|+++.++..|+. .+...++..+.++.++ ...+.....||+|++..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 35789999999999999888753 49999999999888773 4445566655555543 34444446799999863
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. ++ .....+.++|+|||.+++.
T Consensus 158 g-~~------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 158 G-VD------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred c-hH------HhHHHHHHhcCCCCEEEEE
Confidence 2 22 2334578899999999885
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=4.6e-07 Score=104.38 Aligned_cols=103 Identities=17% Similarity=0.331 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEe--
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHC-- 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~S-- 537 (870)
.++.+|||+|||+|..+..++. ..|+++|+++.++..++ +.+...|+..+.++. +...++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 4578999999999987776654 27999999999998877 455566776544444 344444 5678999995
Q ss_pred --cccc-------cccccCh----------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 --ARCR-------VPWHIDG----------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 --s~~a-------lhw~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+... +.|.... ..+|.++.++|||||+|++++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2111 1122221 3589999999999999999953
No 126
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.49 E-value=1.7e-06 Score=92.73 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cCCC-CCCceeEEEecccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RLQF-PRNVFDLVHCARCR 541 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~LPf-pd~SFDlV~Ss~~a 541 (870)
..+|||+|||+|.++..|+.. .|+++|+++.++..|+.+. ...+. .+...+.. .++- ..+.||+|+++.-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAGG--TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCC--EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999887653 7999999999998887443 33343 23333332 2221 13579999997421
Q ss_pred ccc------------c---------cC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPW------------H---------ID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw------------~---------~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. + .+ ...++..+.++|+|||.|++.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 210 0 01 136677788999999999987
No 127
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.48 E-value=2.3e-06 Score=87.89 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=77.8
Q ss_pred cCCCCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccCCCCCCceeEEEe
Q 002884 464 WGKYTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRLQFPRNVFDLVHC 537 (870)
Q Consensus 464 ~g~~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~LPfpd~SFDlV~S 537 (870)
...++.+++|||||+|+++..++. .+|+++|-++..+.... +.+...|+++...+.+. +.|+-.+ +||.|+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI 108 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI 108 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE
Confidence 345788999999999999988872 29999999998887766 45666678888777764 4444222 7999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .....+|..+...|||||.+++.
T Consensus 109 GGg-----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 109 GGG-----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred CCC-----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 742 45789999999999999999987
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=98.46 E-value=1.9e-06 Score=93.57 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
...+|||+|||+|.++..++. .+|+++|+++.|+..++.. .....+...+...+. ....||+|+++...+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 356899999999999877754 3799999999987766532 112333444444443 346899999986533
Q ss_pred ccccC-------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 543 PWHID-------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 543 hw~~D-------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.... ....+..+.++|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 31111 135667788899999987765
No 129
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.43 E-value=9.1e-07 Score=91.52 Aligned_cols=100 Identities=27% Similarity=0.467 Sum_probs=73.5
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CC--CCCCceeEEEecc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQ--FPRNVFDLVHCAR 539 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LP--fpd~SFDlV~Ss~ 539 (870)
...+||||||.|.+...++.. .++|+|+....+..+. ..+...+++++.++.+ +.. +. ++++++|.|+.++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 448999999999999888763 8999999999888876 4555668888777765 332 22 5679999999874
Q ss_pred cccccccCh--------HHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDG--------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. -+|.... ..+|..+.++|+|||.|.+.+
T Consensus 97 P-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 P-DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 3 5565321 589999999999999999983
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.9e-06 Score=90.03 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=73.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCC-CceeEEEecccc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPR-NVFDLVHCARCR 541 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd-~SFDlV~Ss~~a 541 (870)
..++.+||+||||+|..++.|++. +|++++..+.....|..+ ....|+.++..+.++-...++. ..||.|+... +
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~-L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta-a 147 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRN-LETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA-A 147 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHH-HHHcCCCceEEEECCcccCCCCCCCcCEEEEee-c
Confidence 457899999999999999998875 999999999877777643 4456776777777776666665 7899999873 3
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
....+ ..+.+-|||||.+++-
T Consensus 148 a~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 148 APEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred cCCCC------HHHHHhcccCCEEEEE
Confidence 44222 3356679999999986
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.43 E-value=3e-06 Score=91.46 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC---CCcEE-EEcCc-ccCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG---IPAIS-AVMGT-KRLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg---l~~~~-~v~da-e~LPfpd~SFDlV~S 537 (870)
.+++||+||||+|.++..+++. +|+++|+++.++..++..+....+ .+... .+.+. .-+....+.||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999988887654 699999999988877654333211 12222 23332 222223578999998
Q ss_pred cccccccccC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... .++... ...++..+.++|+|||+|++.
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 632 233222 257889999999999999987
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.42 E-value=1.4e-06 Score=87.26 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++.+|||||||+|.++..|+++ +|+++|+++.++..++..+.. .........+...+++++..||+|+++ +++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n---~Py 87 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGN---LPY 87 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEEC---CCc
Confidence 4679999999999999999876 899999999988777644322 112334445567788877789999997 344
Q ss_pred ccChHHHHHHHHh--hcCCCcEEEEE
Q 002884 545 HIDGGKLLLELNR--VLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~~~vL~Ei~R--VLKPGG~Lv~S 568 (870)
+.. ...+..+.. .+.++|+|++.
T Consensus 88 ~~~-~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NIS-TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccH-HHHHHHHHhcCCCcceEEEEEE
Confidence 432 333444433 24588888886
No 133
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.41 E-value=2.9e-05 Score=88.05 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=78.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh---h-Cc-----cceeccccccccCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE---R-GL-----FGIYHDWCESFSTYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e---R-Gl-----ig~~h~wce~f~tyP-rtyDllHa~ 790 (870)
..|||+|||+|-.+.+|..+ |- ..|+-+|.. ..+..+.+ + |+ +.+++ ...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEEC
Confidence 36999999999999999775 21 123334433 33333322 1 21 23333 33344444 589999887
Q ss_pred cccccccCC--cChhhHHHhhhhcccCCcEEEEec--ChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 791 HLFSQLKNR--CKLVPVMAEVDRIVRPGGKLIVRD--EPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 791 ~lfS~~~~r--c~~~~vl~EmDRILRPgG~~iird--~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
--|-..+.- -....++.++-|+|+|||.++|-- ...+..+|+.++. .+.......+-+||-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence 666432211 112467889999999999999873 3455566666554 334445566778888888
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=1.4e-06 Score=100.31 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCC--CCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQ--FPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LP--fpd~SFDlV~S 537 (870)
.++.+|||+|||+|..+..++.. .|+++|+++.++..++ +.+...|+..+.++.+ ...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 45789999999999988777652 7999999999988877 4455567655444443 34332 33 78999997
Q ss_pred cc-cc----cc------cccCh----------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 AR-CR----VP------WHIDG----------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~-~a----lh------w~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.. |. +. |.... ..+|..+.++|||||.|++++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 41 11 11 11111 3579999999999999998843
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.39 E-value=9.5e-07 Score=92.47 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=65.8
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss 538 (870)
.+++.+|||||||+|.+++.|+.. .|+++|+.+.....|+..+ ...++.++.++.++....++ ...||.|++.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l-~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNL-ARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHH-HHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHH-HHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence 357899999999999988888753 5899999998887777443 44466666666665444443 4679999997
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+ +. . +-..+.+.||+||+|++-
T Consensus 149 ~a-~~---~---ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 149 AA-VP---E---IPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp SB-BS---S-----HHHHHTEEEEEEEEEE
T ss_pred ec-cc---h---HHHHHHHhcCCCcEEEEE
Confidence 43 43 2 224467789999999986
No 136
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.39 E-value=6.3e-08 Score=93.71 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=68.8
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCC-CCccchhhhhcccccccC
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTY-PRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~ty-PrtyDllHa~~lfS~~~~ 798 (870)
.-.+|||+|||+|.++..|++.+. .++-+|.. ..+.. +.+....++ ...... +++||+|+|.++|.+..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc-
Confidence 345799999999999999988877 45555544 33333 222222221 112333 48999999999999877
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
+...+|-+|-|+|||||+++|.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4788999999999999999999865
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.38 E-value=2.9e-06 Score=97.72 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cc----cCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TK----RLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae----~LPfpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.|+..|.. .+...++.++.++.+ .. .+++.+++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45679999999999999999875 89999999999998874 455556655545444 32 234666789999987
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ++.. ...++..+.+ |+|++++++|-
T Consensus 375 P---Pr~g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 P---PRAG-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred c---CCcC-hHHHHHHHHh-cCCCeEEEEEe
Confidence 4 3322 3455655555 79999999983
No 138
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.36 E-value=6.8e-07 Score=91.96 Aligned_cols=127 Identities=17% Similarity=0.278 Sum_probs=89.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChh----HHHhhCc--cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLP----IIYERGL--FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~----~i~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||+|.+|.+|+.. +- ..|+-+|.. ..+. .+.+.|+ +-+++.-.+.+.. +.+||+|-+..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 46999999999988877642 21 245555554 4443 3344565 4555655555554 679999988541
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEee--c----CCCceEEEEEeC
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAF--S----KDQEGVLSAQKG 859 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~--~----~~~e~iL~~~K~ 859 (870)
..+..++.++.|+|||||.+++-+.......+..+++.+.|.+...+ + +.+-.+.|.+|+
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 45778999999999999999999988889999999999999975442 1 123346666663
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.35 E-value=2e-06 Score=91.24 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-----fpd~SFD 533 (870)
+.++|||||||+|.-+..|+. ..|+++|+++.++..|+..+ ...|+. .+.++.+ + ..|+ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 467999999999976555543 28999999999888887544 445553 3333333 3 2222 1246899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+|++.. .......++..+.++|||||++++....
T Consensus 147 ~VfiDa----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 147 FAFVDA----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 999852 2234468899999999999999987443
No 140
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.33 E-value=5.2e-06 Score=86.32 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchhHHHH-hc--CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-c-ccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYL-FE--RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-T-KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~L-a~--r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-a-e~LPfpd~SFDlV~Ss~~a 541 (870)
.+.+|||+|||+|.++..+ .. ..|+++|+++..+..+.. .+...++....++.+ . ..++.....||+|+++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~-Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP-- 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIK-NLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP-- 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC--
Confidence 4579999999999999754 33 289999999998777664 344445544444444 2 22333345799999984
Q ss_pred cccccCh-HHHHHHHHh--hcCCCcEEEEE
Q 002884 542 VPWHIDG-GKLLLELNR--VLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~R--VLKPGG~Lv~S 568 (870)
+|.... ..++..+.. +|+|+|+++++
T Consensus 130 -Py~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 130 -PFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred -CCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 444333 445555544 48999999998
No 141
>PLN02366 spermidine synthase
Probab=98.33 E-value=7.9e-06 Score=90.32 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-CC--CcEEEEcC-cc-cCC-CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-GI--PAISAVMG-TK-RLQ-FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-gl--~~~~~v~d-ae-~LP-fpd~SFDlV~ 536 (870)
..++||+||||.|.+++.+++. +|+.+|+++.++..++..+.... ++ +.+.++.+ .. -+. .+.+.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4789999999999999999875 68999999998887775443321 11 23444443 21 121 2356899999
Q ss_pred ecccccccccC----hHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHID----GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.. .-++... ...+++.+.++|+|||+|+..
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 853 2333221 146899999999999999875
No 142
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=92.47 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=73.0
Q ss_pred HHHHhhhhhcC--CCCCEEEEECCCCchhHHHHhcC------CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--c-
Q 002884 455 IQQAVPKIAWG--KYTRVSLDVGCGVASFGGYLFER------DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--K- 523 (870)
Q Consensus 455 L~~~Lp~i~~g--~~~~~VLDIGCGtG~~a~~La~r------~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e- 523 (870)
|.+.+|.+... ....+||+||||.|...-.|.+. .|.+.|+||..+..-..+.... ......++.+. .
T Consensus 57 L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-e~~~~afv~Dlt~~~ 135 (264)
T KOG2361|consen 57 LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-ESRVEAFVWDLTSPS 135 (264)
T ss_pred HHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-hhhhcccceeccchh
Confidence 44444444432 22338999999999877666653 6899999998665433211110 00112233332 2
Q ss_pred -cCCCCCCceeEEEecccccccccC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 524 -RLQFPRNVFDLVHCARCRVPWHID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 524 -~LPfpd~SFDlV~Ss~~alhw~~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.-|...+++|+|++.+++.--+++ ...++..++++|||||.+++.+
T Consensus 136 ~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 136 LKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred ccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 345678999999987653332333 3789999999999999999984
No 143
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=4.6e-06 Score=90.95 Aligned_cols=97 Identities=22% Similarity=0.322 Sum_probs=69.8
Q ss_pred EEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccccc
Q 002884 470 VSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
+|||||||+|.++..|+.. .|+|+|+|+..+..|+ ..+...++.....+...---++. +.||+|+||.=.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999888864 8999999999988887 45666675443444442222233 3899999985333321
Q ss_pred -----c-----Ch--------------HHHHHHHHhhcCCCcEEEEE
Q 002884 546 -----I-----DG--------------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 -----~-----D~--------------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ++ ..++.++.+.|+|||++++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 0 01 25678899999999999987
No 144
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.31 E-value=4e-06 Score=88.93 Aligned_cols=98 Identities=20% Similarity=0.359 Sum_probs=78.1
Q ss_pred CEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-c-ccCC--CCCCceeEEEeccc
Q 002884 469 RVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-T-KRLQ--FPRNVFDLVHCARC 540 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-a-e~LP--fpd~SFDlV~Ss~~ 540 (870)
..+||||||.|.+...++.. .++||++...-+..+. +.+.+.+++++..++. + .-|. ++++++|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999875 8999999998777766 6777888855555544 3 2222 45669999998764
Q ss_pred ccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-+|+... ..+|..+.++|+|||.|.+.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 7787432 58999999999999999998
No 145
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.28 E-value=3.5e-07 Score=94.76 Aligned_cols=113 Identities=19% Similarity=0.362 Sum_probs=75.9
Q ss_pred ccccccccchhHHhhhcCC--CeEEEEeccCCC-CCChhHHH----hhCcc---ceec-cccccccCCCCccchhhhhcc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QVWVMNVVNVNS-PDTLPIIY----ERGLF---GIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~-~~tl~~i~----eRGli---g~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
.|||+|||.|+++..|.+. ++ +|+-++. +.++..+. ++|+- .+++ |..+. ++|.+||+|++.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 5999999999999988754 22 2222332 24444443 34653 3333 33222 45789999999888
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecChh----------------hHHHHHHHHHcCCceEEE
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS----------------AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~----------------~~~~~~~~~~~l~W~~~~ 844 (870)
|.+.. +...+|-++.|+|||||++++.+... ....+..++..-.+++..
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 87664 36789999999999999999986421 135566677777777643
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=98.28 E-value=6.4e-06 Score=92.57 Aligned_cols=127 Identities=14% Similarity=0.069 Sum_probs=79.5
Q ss_pred CCCccccccH-HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHH---H
Q 002884 439 GGGTQFIHGA-LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFAL---E 510 (870)
Q Consensus 439 gggt~F~~gA-~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~---e 510 (870)
.|..++.... ..|.+.|.... +......++||+||||+|..++.+++. +|+++|+++.++..|+..... .
T Consensus 123 DG~~Q~se~DE~iYHE~Lvhp~--m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~ 200 (374)
T PRK01581 123 DKQLQFSSVDEQIYHEALVHPI--MSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLN 200 (374)
T ss_pred CCeeccccccHHHHHHHHHHHH--HHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhc
Confidence 3444444433 34555555432 122334679999999999988888764 799999999988877631110 1
Q ss_pred c---CCCcEEEE-cCc-ccCCCCCCceeEEEeccccccccc-----ChHHHHHHHHhhcCCCcEEEEE
Q 002884 511 R---GIPAISAV-MGT-KRLQFPRNVFDLVHCARCRVPWHI-----DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 511 r---gl~~~~~v-~da-e~LPfpd~SFDlV~Ss~~alhw~~-----D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ..+.+.++ .+. .-++-..+.||+|++... -+... ....++..+.+.|+|||+|++.
T Consensus 201 ~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 201 KSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1 12334343 343 224445678999998631 11110 1156899999999999999886
No 147
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.28 E-value=7.8e-06 Score=72.44 Aligned_cols=96 Identities=31% Similarity=0.362 Sum_probs=66.8
Q ss_pred EEEECCCCchh--HHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCccc--CCCCC-CceeEEEeccccc
Q 002884 471 SLDVGCGVASF--GGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGTKR--LQFPR-NVFDLVHCARCRV 542 (870)
Q Consensus 471 VLDIGCGtG~~--a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~dae~--LPfpd-~SFDlV~Ss~~al 542 (870)
+||+|||+|.. ...+... .++++|+++.++..+...... .+.. ......+... +++.. ..||++ +..+.+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444442 688999999888773322222 2222 2333444433 78887 589999 655545
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++.. ....+.++.++|+|+|.+++..
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 5544 7899999999999999999984
No 148
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.27 E-value=3e-06 Score=89.28 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
....+|||||+|.|.++..++++ +++.+|+ |..+..+. + .+.+.++.++.--|+|. +|+|+...++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-----~--~~rv~~~~gd~f~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-----E--ADRVEFVPGDFFDPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-----H--TTTEEEEES-TTTCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-----c--ccccccccccHHhhhcc--ccceeeehhh
Confidence 35679999999999999888764 8888998 54444433 2 44566666653366766 9999998875
Q ss_pred cccccCh-HHHHHHHHhhcCCC--cEEEEEECCCc
Q 002884 542 VPWHIDG-GKLLLELNRVLRPG--GYFVWSATPVY 573 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~RVLKPG--G~Lv~S~~p~~ 573 (870)
..|.++. ..+|+.+++.|+|| |.|++......
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 5665433 78999999999999 99999865433
No 149
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.27 E-value=3.9e-06 Score=87.49 Aligned_cols=118 Identities=14% Similarity=0.252 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEE--EEcCc-
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAIS--AVMGT- 522 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~--~v~da- 522 (870)
...+.|.+.++. .+.+||+||||||..+.+++.. ...-.|+++..+.... ....+.+.+++. ...+.
T Consensus 13 pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~-a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 13 PILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIR-AWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred HHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHH-HHHHhcCCcccCCCeEeecC
Confidence 344445555443 2336999999999877777664 5666677776432222 233344443321 12222
Q ss_pred -ccCCC------CCCceeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEEEECCCcC
Q 002884 523 -KRLQF------PRNVFDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVWSATPVYQ 574 (870)
Q Consensus 523 -e~LPf------pd~SFDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S~~p~~~ 574 (870)
...|. ..++||+|+|.++ +|...- ...+|..+.++|+|||+|++-+++.++
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred CCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 22232 3568999999864 665532 278999999999999999999776554
No 150
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.26 E-value=7e-06 Score=94.09 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-cc----CCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KR----LQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~----LPfpd~SFDlV~Ss 538 (870)
.++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+. .+...++.++.++.++ .. +++.+.+||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 34679999999999999999874 89999999999988874 4455566665555543 22 23445689999986
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.- ...-...++..+. .|+|+++++++
T Consensus 370 PP---r~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 370 PP---RKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred cC---CCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 32 1111256666555 48999998887
No 151
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.25 E-value=6.6e-06 Score=93.79 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEc-Cccc-C---CCCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVM-GTKR-L---QFPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~-dae~-L---Pfpd~SFDlV~ 536 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|..+ +...++. .+.++. +... + ....++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N-~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999988664432 799999999999988744 4444553 344444 3322 2 12346899999
Q ss_pred ecccccccc--------cChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 CARCRVPWH--------IDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 Ss~~alhw~--------~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
+..-.+.-. .+...++..+.++|+|||+|++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 974222111 0123455667899999999998643
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.24 E-value=9.4e-06 Score=89.57 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCC-CCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQF-PRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPf-pd~SFDlV~Ss~~al 542 (870)
++.+|||+|||+|.++..|+.. .|+|+|+++.++..|+ +.+...++.++.++.+ ...+.. ..+.||+|+++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP--- 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP--- 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---
Confidence 4579999999999999999875 8999999999999887 4555666665555544 333322 345799999873
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+. ......+.++...++|+++++++.
T Consensus 249 Pr-~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 249 PR-RGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CC-CCccHHHHHHHHHcCCCeEEEEEC
Confidence 21 122334445555578999999873
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=2.3e-06 Score=90.66 Aligned_cols=102 Identities=21% Similarity=0.440 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCchhHHHHhc----CCEEEEeCChhhHHHHHHHHHH--Hc--CCC------------------------
Q 002884 467 YTRVSLDVGCGVASFGGYLFE----RDVLTMSFAPKDEHDAQIQFAL--ER--GIP------------------------ 514 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~--er--gl~------------------------ 514 (870)
.+..+|||||-.|.++..+++ +.|+|+||++..++.|....-. .+ ...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 357899999999999888886 3899999999988877643211 00 000
Q ss_pred ------cEE-----EEcC-cccCCCCCCceeEEEecccc----cccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 515 ------AIS-----AVMG-TKRLQFPRNVFDLVHCARCR----VPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 515 ------~~~-----~v~d-ae~LPfpd~SFDlV~Ss~~a----lhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++. .++. +.-|-+....||+|+|-..+ +.|+++. ..+|+.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 1111 11223445679999984211 4466554 78999999999999999996
No 154
>PLN02244 tocopherol O-methyltransferase
Probab=98.23 E-value=5e-07 Score=100.67 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=64.1
Q ss_pred ccccccccccchhHHhhhcCC-C--eEEEEeccCCCCCChhHHHhhCcc---ceeccccccccCCC-Cccchhhhhcccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-Q--VWVMNVVNVNSPDTLPIIYERGLF---GIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~--vwvmNvvp~~~~~tl~~i~eRGli---g~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-..|||+|||.|+++..|.+. + |..+.+.|.........+.++|+. -+++.-.+.+ +|| .+||+|.+...+-
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEECCchh
Confidence 356999999999999999875 3 444444332211112233445653 2333222332 454 8999999876665
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+.. +...+|.||-|+|||||.|+|.+
T Consensus 198 h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 198 HMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 543 35679999999999999999964
No 155
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.23 E-value=5.5e-06 Score=100.70 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEc-Ccc-cCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVM-GTK-RLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~-dae-~LPfpd~SFDlV~Ss~ 539 (870)
++.+|||+|||+|.++..++.. .|+++|+++.++..|+.+.. ..++. .+.++. +.. -+.-..+.||+|++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3679999999999999988864 69999999999998885544 44553 344444 332 1211146899999963
Q ss_pred cccccc----------cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWH----------IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~----------~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-.+.-. .+...++..+.++|+|||.|+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 222111 123567888899999999999874
No 156
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.22 E-value=6.3e-07 Score=95.45 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=68.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCccc---eeccccccccCC-CCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLFG---IYHDWCESFSTY-PRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGlig---~~h~wce~f~ty-PrtyDllHa~~lf 793 (870)
..|||+|||.|.++..|+..+. +|+-+|.. ..+..+.+ .|+.. +++.-.+.+..+ +.+||+|.+.++|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999998864 55566654 66665554 35532 333222334434 5899999999888
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.... +...+|-++-|+|||||+++|.
T Consensus 123 ~~~~---~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVA---DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhC---CHHHHHHHHHHHcCCCeEEEEE
Confidence 7654 3567999999999999999875
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.19 E-value=4.9e-06 Score=88.30 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHH--HcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFAL--ERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~--ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.+.+|||+|||+|.|+..|++. .|+|+|+++.|++....+.++ ..+..++. ....+.++..-..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCceeeeEEEeehH-
Confidence 5779999999999999999875 799999999887653221111 00111111 1111222222246888887642
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
.+|..+.++|+| |.+++-..|-
T Consensus 153 --------~~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 153 --------SILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred --------hHHHHHHHHhCc-CeEEEEcChH
Confidence 258899999999 8877654443
No 158
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.19 E-value=2.8e-06 Score=89.17 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
...++||.|||.|+++..|+-. .|..+|..+..+..|+.........-..++..+.+.+-.+...||+|++-.|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4679999999999999877543 8999999999887776433322222234556666666545679999999888666
Q ss_pred ccc-ChHHHHHHHHhhcCCCcEEEEE
Q 002884 544 WHI-DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 544 w~~-D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
... |...+|..+...|+|+|++++-
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 553 3489999999999999999986
No 159
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.17 E-value=3.1e-07 Score=99.67 Aligned_cols=105 Identities=18% Similarity=0.348 Sum_probs=71.0
Q ss_pred cccccccccccccccccchhHHhhhcCC-Ce--EEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-QV--WVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-~v--wvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+++.-+ ..|||+|||.||++.+|+++ ++ ..+++++.+..--...|.++||...+..-|..+..+|-+||-|-+.+
T Consensus 58 ~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~ 135 (273)
T PF02353_consen 58 LGLKPG--DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIE 135 (273)
T ss_dssp TT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEES
T ss_pred hCCCCC--CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEe
Confidence 344444 35999999999999999988 65 34443333322333456789998777766666777777999999999
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+|-+... -....++-.++|+|+|||.+++.
T Consensus 136 ~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 136 MFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred chhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 9887642 35678899999999999999977
No 160
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.16 E-value=8.9e-07 Score=95.19 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=69.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC-------c--cceeccccccccCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG-------L--FGIYHDWCESFSTYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG-------l--ig~~h~wce~f~tyP-rtyDllHa~ 790 (870)
..|||+|||+|.++..|.+. +. --+|+-+|.. .+|..+.+|. . +-+++.-++.+ +|| .+||+|.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEEe
Confidence 46999999999999988764 21 0156666655 7887776652 1 23344445554 466 799999987
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
..+.... +...+|.||-|+|||||.++|.|
T Consensus 153 ~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7766543 56789999999999999999986
No 161
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.16 E-value=4.8e-06 Score=86.43 Aligned_cols=102 Identities=24% Similarity=0.398 Sum_probs=60.2
Q ss_pred CCCEEEEECCCCc----hhHHHHhc------C---CEEEEeCChhhHHHHHHHHH---HHcCCC----------------
Q 002884 467 YTRVSLDVGCGVA----SFGGYLFE------R---DVLTMSFAPKDEHDAQIQFA---LERGIP---------------- 514 (870)
Q Consensus 467 ~~~~VLDIGCGtG----~~a~~La~------r---~VtgVDiSp~ml~~A~vq~A---~ergl~---------------- 514 (870)
+.-+|+.+||++| +++..|.+ . +|+|.|+++..+..|+.-.- .-++++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 45555544 1 79999999998887753100 000111
Q ss_pred ---------cEEEEcCcccCCCCCCceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 515 ---------AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 515 ---------~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+...+....+.+.+.||+|+|.++++.+.... ..++..+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1122333333334457899999988766665433 78999999999999999997
No 162
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.15 E-value=1.4e-06 Score=92.12 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=68.6
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCCCccchhhhhcccccccC
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYPRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~ 798 (870)
....|||+|||+|.++..|...+. .|+-+|.. ..+..+.+++- +..+..-.+.++..+.+||+|.++..|-..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~-- 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC-- 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc--
Confidence 346799999999999999987653 45555553 67777777653 233333334544334799999886555322
Q ss_pred CcChhhHHHhhhhcccCCcEEEEec
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-++..+|.||-|+|||||+|+|..
T Consensus 117 -~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 -GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred -CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 256789999999999999999984
No 163
>PRK03612 spermidine synthase; Provisional
Probab=98.14 E-value=2e-05 Score=92.78 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHH--HHH-Hc---CCCcEEEEc-Cccc-CCCCCCcee
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQ--FAL-ER---GIPAISAVM-GTKR-LQFPRNVFD 533 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq--~A~-er---gl~~~~~v~-dae~-LPfpd~SFD 533 (870)
++.++|||||||+|..+..++++ +|+++|+++.++..++.. +.. .. .-+.+..+. |... +....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35689999999999999888764 799999999988877642 111 10 113333333 3322 333356899
Q ss_pred EEEecccccccccCh-----HHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWHIDG-----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~~D~-----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|++.. ..++.... ..+++.+.++|||||.|++..
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999973 23332221 468899999999999999874
No 164
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.14 E-value=1.1e-06 Score=93.51 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=69.3
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
-..|||+|||.|.++.+|... +- ..|+-+|.. .++..+.++++- +++.-.+.+. ...+||+|++..+|-...
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-- 103 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVD-ARTGDVRDWK-PKPDTDVVVSNAALQWVP-- 103 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCc-EEEcChhhCC-CCCCceEEEEehhhhhCC--
Confidence 356999999999999999876 11 134555543 788888888743 3332234432 237999999988886654
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
+...+|.++-|+|||||+++|..
T Consensus 104 -d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 104 -EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred -CHHHHHHHHHHhCCCCcEEEEEc
Confidence 45779999999999999999974
No 165
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.12 E-value=9e-06 Score=89.02 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCEEEEECCCCc----hhHHHHhc--------CCEEEEeCChhhHHHHHHHHHH---HcCCC------------------
Q 002884 468 TRVSLDVGCGVA----SFGGYLFE--------RDVLTMSFAPKDEHDAQIQFAL---ERGIP------------------ 514 (870)
Q Consensus 468 ~~~VLDIGCGtG----~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~---ergl~------------------ 514 (870)
.-+|+..||++| +++..|.+ -+|+|+|+++..+..|+.-.-. -++++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 34544433 1699999999998877642100 00110
Q ss_pred ----------cEEEEcCcccCCCC-CCceeEEEecccccccccC-hHHHHHHHHhhcCCCcEEEEE
Q 002884 515 ----------AISAVMGTKRLQFP-RNVFDLVHCARCRVPWHID-GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 515 ----------~~~~v~dae~LPfp-d~SFDlV~Ss~~alhw~~D-~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+...+....+++ .+.||+|+|.++++++... ...++..+++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01122222222333 5789999998776666443 379999999999999999886
No 166
>PHA03412 putative methyltransferase; Provisional
Probab=98.11 E-value=9.4e-06 Score=86.53 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCEEEEECCCCchhHHHHhc-------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE-------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~-------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
+.+|||+|||+|.++..++. ..|+++|+++.++..|+... ....+...+....++ +++||+|+||.=
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECCC
Confidence 57999999999999887754 27999999999877766321 123334444444444 568999999842
Q ss_pred ccccc-cC----------hHHHHHHHHhhcCCCcE
Q 002884 541 RVPWH-ID----------GGKLLLELNRVLRPGGY 564 (870)
Q Consensus 541 alhw~-~D----------~~~vL~Ei~RVLKPGG~ 564 (870)
.+... .+ ...++..+.|+|+||+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11100 11 14578888887777776
No 167
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=4.4e-05 Score=82.32 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc----
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM---- 520 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~---- 520 (870)
..+.+.+.+.+....+. .+..+||+|||+|.++..|+.. .|+++|.|+..+..|. +.|+..++...+.+.
T Consensus 131 EE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEeccc
Confidence 34555555555544333 3458999999999888777653 8999999999887765 445544443333332
Q ss_pred C-c--ccCCCCCCceeEEEecccccccccCh--------------------------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 521 G-T--KRLQFPRNVFDLVHCARCRVPWHIDG--------------------------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 521 d-a--e~LPfpd~SFDlV~Ss~~alhw~~D~--------------------------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. . ...+...+.+|+++||.-.+. +.|. ..++.-+.|.|+|||.+++. ..
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le-~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE-LV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE-ec
Confidence 1 1 344566799999999853222 1111 13556678999999999998 33
Q ss_pred CcCchhHHHHHHH
Q 002884 572 VYQKLGEDVEIWN 584 (870)
Q Consensus 572 ~~~tL~El~~~w~ 584 (870)
....-+.+...|-
T Consensus 287 ~~~~~~~lv~~~m 299 (328)
T KOG2904|consen 287 ERKEHSYLVRIWM 299 (328)
T ss_pred ccccCcHHHHHHH
Confidence 3344455555553
No 168
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.11 E-value=8.8e-07 Score=95.32 Aligned_cols=97 Identities=15% Similarity=0.259 Sum_probs=64.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCC-Cccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
..|||+|||+|+++..|... +. .|+-+|.. +.+..+.+|- .+.+.+.=+.. .+|| .+||+|++...|-+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK-KDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCccc-CCCCCCCeEEEEEhhhHHh
Confidence 45999999999999988654 32 33444433 5555555542 23333322222 2465 79999999665544
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.. ..+...+|-++-|+|||||+|+|.|.
T Consensus 130 ~~-~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 130 LS-YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 32 12567899999999999999999974
No 169
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.09 E-value=1.5e-06 Score=92.57 Aligned_cols=96 Identities=21% Similarity=0.348 Sum_probs=74.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc------cceeccccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL------FGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl------ig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-+|||++||+|=+|..|++.-= --.|+-+|-. ++|.+..+|-. |-.++.=.|.++ || .|||++-+...|-
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehhh
Confidence 3599999999999999987621 3456667755 89999988865 345677778877 66 9999986644443
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
... +++.+|-||-|||+|||.+++-+
T Consensus 131 nv~---d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVT---DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCC---CHHHHHHHHHHhhcCCeEEEEEE
Confidence 333 68899999999999999888875
No 170
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.08 E-value=5e-06 Score=86.60 Aligned_cols=96 Identities=19% Similarity=0.375 Sum_probs=61.9
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHh----hCc--cceeccccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYHDWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||.|.++..|.+. +- .+|+-+|.. ..+..+.+ .++ +-+++.-++.+ ++| .+||+|++...
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEecc
Confidence 46999999999999988754 11 123333332 44443332 233 23343323333 355 79999998766
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
|.... +...+|.|+-|+|||||++++.+.
T Consensus 124 l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 65433 355789999999999999998753
No 171
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=4.4e-05 Score=81.79 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=73.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-cccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG-TKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d-ae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||.|.|+|.++.+|+.. +|+++|+-+.....|+.++.. .++.. +....+ ....-+++ .||+|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEEEc
Confidence 57899999999999999999952 899999999888888755444 35443 333333 33333333 89999874
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.+++..+|..+..+|+|||.+++-.
T Consensus 171 ------mp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 171 ------LPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred ------CCChHHHHHHHHHHhCCCcEEEEEc
Confidence 2689999999999999999999873
No 172
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.07 E-value=1.8e-06 Score=88.78 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=75.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH----HhhCcc--ceeccccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII----YERGLF--GIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
..|||+|||+|.++.+|++++. .|+-+|.. ..+..+ .+.|+- ....|.. . ..++.+||+|.+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~-~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-A-AALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-h-ccccCCCCEEEEeccccc
Confidence 4699999999999999998763 55666654 555543 334542 1111221 2 234678999999887764
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec-----------Chh---hHHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD-----------EPS---AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird-----------~~~---~~~~~~~~~~~l~W~~~~~ 845 (870)
... -.+..++-++.|+|+|||+++|-. +.. ...+|+.++.. |++...
T Consensus 107 ~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~ 167 (195)
T TIGR00477 107 LQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKY 167 (195)
T ss_pred CCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEe
Confidence 432 356789999999999999854431 011 24667777764 776654
No 173
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.06 E-value=7.8e-07 Score=81.68 Aligned_cols=96 Identities=27% Similarity=0.434 Sum_probs=64.9
Q ss_pred cccccccccchhHHhhhcC--CCeEEEEeccCCCC-CChhHHHhh----Cc---cceec-cccccccCCCCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKD--LQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYH-DWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~--~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h-~wce~f~tyPrtyDllHa~~ 791 (870)
..|||+|||.|.++.+|++ .+. .|+-+|.. ..+.++.+| ++ +-+++ |+ ......+..||+|.+.+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 3589999999999999998 554 34444543 555554444 33 33444 45 33345556699999988
Q ss_pred cccc--ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 792 LFSQ--LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 792 lfS~--~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|+. +-.......+|-.+-+.|||||++||++
T Consensus 79 -~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 -FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 421 2221345678999999999999999975
No 174
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.06 E-value=3.9e-05 Score=86.87 Aligned_cols=98 Identities=20% Similarity=0.119 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LPfpd~SFDlV~Ss~~al 542 (870)
.+.+|||+|||+|.++..|+.. .|+|+|+++.++..|+ +.+...++....++.+ ... ++-....||+|++..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP--- 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP--- 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC---
Confidence 3579999999999999988865 8999999999998877 4455556654444444 322 221224599999874
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+...-...++..+. .++|+++++++-
T Consensus 309 Pr~G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 309 PRRGIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCcHHHHHHHH-hcCCCeEEEEEe
Confidence 22211245555554 589999999983
No 175
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.06 E-value=2.6e-05 Score=91.57 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccC--CCCCCceeEEEe
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRL--QFPRNVFDLVHC 537 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~L--Pfpd~SFDlV~S 537 (870)
+.....+||||||.|.+...++.. .++|+|+...-+..+. +.+...++.+..++.++ ..+ -|+++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 445789999999999999888864 8999999998777766 45566788777666553 212 278899999998
Q ss_pred cccccccccCh--------HHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG--------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~--------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++. -+|.... ..+|..+.++|||||.|.+.
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 754 7775321 68999999999999999998
No 176
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.05 E-value=8.4e-06 Score=82.23 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=83.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc-cceec-cccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
+.|||+|||+|.++.+|...+. .|+-+|.. ..+..+.+ .|+ +-+++ |+.+. .+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4599999999999999988754 44555543 44443332 232 22233 45442 3569999877655421
Q ss_pred cc------------------CCcChhhHHHhhhhcccCCcEEEEecChhh-HHHHHHHHHcCCceEEEeecC-CCceEEE
Q 002884 796 LK------------------NRCKLVPVMAEVDRIVRPGGKLIVRDEPSA-VTEVENFLKSLHWEILFAFSK-DQEGVLS 855 (870)
Q Consensus 796 ~~------------------~rc~~~~vl~EmDRILRPgG~~iird~~~~-~~~~~~~~~~l~W~~~~~~~~-~~e~iL~ 855 (870)
.. .++.+..+|-++.|+|+|||.+++...... ...+...++...|........ -...-|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 174 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEELF 174 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceEEE
Confidence 11 122356789999999999999999876555 677788888888888765332 2333444
Q ss_pred EEe
Q 002884 856 AQK 858 (870)
Q Consensus 856 ~~K 858 (870)
+-|
T Consensus 175 ~~~ 177 (179)
T TIGR00537 175 AIK 177 (179)
T ss_pred EEE
Confidence 444
No 177
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.04 E-value=1.4e-05 Score=84.34 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC---CC---------cEEEEcCcccCCCCC-C
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG---IP---------AISAVMGTKRLQFPR-N 530 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg---l~---------~~~~v~dae~LPfpd-~ 530 (870)
.++.+||..|||.|.-+..|+++ +|+|+|+|+..+..+..+...... .. ..+++.|...++-.. +
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 45679999999999999999987 899999999876655322211000 01 122333444444332 4
Q ss_pred ceeEEEec--ccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCA--RCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss--~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.||+|+=. +|+++ ......+...+.++|+|||.+++.
T Consensus 116 ~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 116 KFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEE
Confidence 79999853 44454 123489999999999999995443
No 178
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=90.86 Aligned_cols=101 Identities=26% Similarity=0.279 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCcccCCCCCCceeEEEeccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGTKRLQFPRNVFDLVHCARC 540 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~dae~LPfpd~SFDlV~Ss~~ 540 (870)
.++..++|+|||.|....++.. .+++|++.++..+..+.... ...++.. .+.+.+....||+++.||.|.+...
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~-~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELA-KKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHH-HHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 4566899999999988877764 38999999998777666332 2233321 2234445788999999999999764
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.+.+++..++.|++|+|+|||+++..
T Consensus 188 -~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 -VCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -cccCCcHHHHHHHHhcccCCCceEEeH
Confidence 667788999999999999999999975
No 179
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.03 E-value=2.3e-05 Score=87.34 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=85.4
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhH--HHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcE--EEEcCcccCCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFG--GYLFERDVLTMSFAPKDEHDAQIQFALERGIPAI--SAVMGTKRLQF 527 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a--~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~--~~v~dae~LPf 527 (870)
...+++.+.++...+++..|||==||||.++ +.|...+++|.|++..|+..|..++-. .++... ..++++..+||
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-YGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-hCcCceeEEEecccccCCC
Confidence 3456666666666678889999999999876 455667999999999999988765544 334322 33447899999
Q ss_pred CCCceeEEEecc-----cccccc--cC-hHHHHHHHHhhcCCCcEEEEEE
Q 002884 528 PRNVFDLVHCAR-----CRVPWH--ID-GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 528 pd~SFDlV~Ss~-----~alhw~--~D-~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++++||.|++-. +...-. .. ...+|..+.++|++||+++|..
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 999999999831 001100 11 2678999999999999999984
No 180
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.01 E-value=2e-06 Score=88.56 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=74.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH----HHhhCccc---eeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI----IYERGLFG---IYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~----i~eRGlig---~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|++++. +|+-+|.. ..+.. +..+|+-. ...|+.+ + +++.+||+|-+.++|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4699999999999999998853 45555543 44433 34455522 2234432 2 3467899999987774
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec---Ch--------h---hHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD---EP--------S---AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird---~~--------~---~~~~~~~~~~~l~W~~~~~ 845 (870)
... .-.+..+|-+|.|+|||||++++-. .. . ...++...+. .|++...
T Consensus 107 ~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 107 FLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 432 3356789999999999999965431 10 0 1345666666 5877553
No 181
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.00 E-value=4.1e-05 Score=85.12 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHhhhh----hcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCc-EE
Q 002884 447 GALHYIDFIQQAVPKI----AWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPA-IS 517 (870)
Q Consensus 447 gA~~Yid~L~~~Lp~i----~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~ 517 (870)
+...|+..|.+++... .......+|||||||+|.+...|+.+ .++|+|+++..+..|+...+...++.. +.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 3566888777776431 11224679999999999877766543 899999999999998865554424432 22
Q ss_pred EE-cCc-ccC----CCCCCceeEEEecccccccccCh
Q 002884 518 AV-MGT-KRL----QFPRNVFDLVHCARCRVPWHIDG 548 (870)
Q Consensus 518 ~v-~da-e~L----Pfpd~SFDlV~Ss~~alhw~~D~ 548 (870)
+. ... ..+ ..+.+.||+|+|+. +|+...
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNP---Pf~~s~ 203 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNP---PFHASA 203 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCC---CCcCcc
Confidence 22 221 111 12467899999995 555443
No 182
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.00 E-value=2.8e-06 Score=94.38 Aligned_cols=94 Identities=12% Similarity=0.205 Sum_probs=70.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c---cceeccccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L---FGIYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l---ig~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|||+|||.|.|+.+|+..+. +|+-+|.. ..+.++.++. + +..++.-.+.+...+++||+|=|.++|-+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 699999999999999988753 56666765 6777766542 2 22333333554433479999999888876
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. +...+|-++-|+|||||.++|..
T Consensus 211 v~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65 46789999999999999999985
No 183
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.99 E-value=4.1e-06 Score=85.58 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=73.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCc--cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGL--FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
++|||+|||+|.++..|+.. +- ..|+-+|.. ..+.++ .+.|+ +-+++.=.+.+ ..+.+||+|-+++ +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-~~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-QHEEQFDVITSRA-L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-cccCCccEEEehh-h-
Confidence 57999999999988876532 11 234445544 333332 33465 33444322333 2357999998865 2
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCC-ceEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLH-WEIL 843 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~-W~~~ 843 (870)
..+.+++-.+.|+|||||.+++.........+..+.++++ |...
T Consensus 119 -----~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 119 -----ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred -----hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 3567788899999999999999988888888888877643 4443
No 184
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.96 E-value=4.3e-06 Score=92.75 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=62.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH--HHhh--C---ccceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI--IYER--G---LFGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~--i~eR--G---lig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
+.|||+|||.|.++.+|+..+-- .|+-+|.. ..+.. +..+ + -+-+++.=.+.++. +.+||+|+|.+++-
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 57999999999999999877421 13334432 22211 1111 1 12233322244444 78999999988875
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+ +-+...+|.++-|+|||||.|||.
T Consensus 201 H---~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 H---RRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c---cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4 346778999999999999999986
No 185
>PLN02672 methionine S-methyltransferase
Probab=97.95 E-value=3.1e-05 Score=97.28 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=68.0
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---------------CCCcEEEEcCcccCCCC
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---------------GIPAISAVMGTKRLQFP 528 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---------------gl~~~~~v~dae~LPfp 528 (870)
+.+|||||||+|.++..|+.. .|+++|+++.++..|..+..... ....+.++.++..-++.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999888753 79999999999988875544321 01234444443222233
Q ss_pred C--CceeEEEecccccccc---------------------------------cCh----HHHHHHHHhhcCCCcEEEEE
Q 002884 529 R--NVFDLVHCARCRVPWH---------------------------------IDG----GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 529 d--~SFDlV~Ss~~alhw~---------------------------------~D~----~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. ..||+|+||.-.+... .|. ..++.++.++|+|||.+++.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 3699999974322100 111 45678888999999999987
No 186
>PLN02476 O-methyltransferase
Probab=97.92 E-value=4.4e-05 Score=83.33 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-C----CCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-F----PRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-f----pd~SFD 533 (870)
+.++|||||+|+|..+..|+.. .|+++|.++.....|+..+ .+.|+. .+.++.+ + +.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4789999999999988888752 6999999999888877444 455664 3444444 2 3333 1 136899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
+|+.-. +......++..+.++|+|||++++-....
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 999752 33445788999999999999999875443
No 187
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.91 E-value=1.9e-05 Score=84.31 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=77.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhccccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
..|||+|||.|..+.++...+.- .|+-+|.. ..+..+.++ |+-..++-.+. ..+||+|.|+-+..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcHH---
Confidence 56999999999999888776431 24444443 444443332 33111111111 11799998853321
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecChh-hHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEPS-AVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~~-~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.+..++-++.|+|||||++|+.+-.. ....+...++...|.+......+.=..++++|
T Consensus 191 ---~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 191 ---PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 24467889999999999999997543 45778888888889887554444334555555
No 188
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.89 E-value=6e-05 Score=79.63 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEc--Cc-ccCC-CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVM--GT-KRLQ-FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~--da-e~LP-fpd~SFDlV~ 536 (870)
..++||+||.+.|.-+..|+.. +++++|+++.+...|+..++ +.|+.. +..+. ++ +.+. +..++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 5789999999999888777653 69999999999998885554 455543 33333 22 2222 4578999999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.- ++-.+...+|..+.++|||||++++-..
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 74 2445568999999999999999998743
No 189
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.89 E-value=1.3e-05 Score=81.51 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=73.3
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCccceeccccc-cccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGLFGIYHDWCE-SFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGlig~~h~wce-~f~tyPrtyDllHa~~lfS~ 795 (870)
.+|||+|||.|.++.+|... +- .+|+-+|.. ..+..+.+ .|+-. +.-.+. ....++..||+|.+.+.+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~-- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG-- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc--
Confidence 56999999999999888654 21 134444443 34444322 24321 111121 123456789999886543
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~ 842 (870)
..+..++.++-|+|+|||++++.. .......+..+++...|..
T Consensus 108 ----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 ----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 346778999999999999999976 4556778888898888853
No 190
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.87 E-value=9.6e-06 Score=83.97 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=78.6
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC-C-CCccchhhhh
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST-Y-PRSYDLLHAD 790 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t-y-PrtyDllHa~ 790 (870)
-.+|||+|||+|.++..|+.. +- .+|+-+|-. ..+..+.+ .|+ +-+++ |+.+.++. + +.+||+|.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 467999999999999998764 21 134444433 44444332 244 23344 34255542 5 4799998764
Q ss_pred cccc-----cccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEE
Q 002884 791 HLFS-----QLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 791 ~lfS-----~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~ 844 (870)
.... ....+.....+|-++.|+|+|||.|+|. +.......+...+..-.|.+.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 2221 1112234578999999999999999986 6666777888888888887764
No 191
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.86 E-value=1.6e-05 Score=86.72 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=74.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCC-CCccchhhhhcccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTY-PRSYDLLHADHLFSQL 796 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~ty-PrtyDllHa~~lfS~~ 796 (870)
..|||+|||+|.++.+++..+. -.|+-+|.. ..+..+.++ |+-..+...+.....+ +..||+|+|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 5699999999999988877654 245555544 445444443 3322333333323334 47999999965433
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEE
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~ 844 (870)
.+..++-++-|+|||||++|+..-. +-...+...+++. |++..
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 2456888999999999999998643 2346667767766 77654
No 192
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.85 E-value=4.6e-05 Score=84.67 Aligned_cols=97 Identities=16% Similarity=0.346 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEE-EcC-cccCCCCCCceeEEEec---
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISA-VMG-TKRLQFPRNVFDLVHCA--- 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~-v~d-ae~LPfpd~SFDlV~Ss--- 538 (870)
++++|||+|||+|.++..-+++ +|+++|.|.. ...|. +.++..++..++- +.+ .+.+-+|-..+|+|+|-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~-~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFAR-KIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHH-HHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 5789999999999887766654 9999999884 34444 5667777765443 333 34444557789999983
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEE
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
+|++ +-.-+..+|-.=.+-|+|||.++
T Consensus 138 y~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 2212 11234677777789999999988
No 193
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.85 E-value=6.2e-06 Score=87.66 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=63.8
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCC-Cccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
.|||++||+|-++..|.+.-----.|+-+|-. ++|.++.+| |+ |-.+..-+|.++ || .+||.|=+...|-
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fglr- 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFGLR- 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-GG-
T ss_pred EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhhHH-
Confidence 69999999999999887641111256666755 888888776 33 344445567754 65 8999987644443
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+-+++...|-||-|||||||.|+|-|
T Consensus 128 --n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 128 --NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp --G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 33568889999999999999999876
No 194
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.84 E-value=7.9e-05 Score=77.98 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-c-ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-T-KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-a-e~LP-----fpd~SFD 533 (870)
..++||+|||++|.-+..|+.. +|+++|+++.....|+. +....|+. .+.++.+ + +.|+ .+.+.||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~-~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARE-NFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHH-HHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHH-HHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4679999999999888888753 89999999998877763 44555653 3444444 2 2222 1245899
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
+|+.-. ...+...++..+.++|+|||++++-....
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 999852 33455788999999999999999985443
No 195
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.84 E-value=0.00011 Score=74.48 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHHhhh--hhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC----CCc
Q 002884 446 HGALHYIDFIQQAVPK--IAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG----IPA 515 (870)
Q Consensus 446 ~gA~~Yid~L~~~Lp~--i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg----l~~ 515 (870)
.++..+..+|...... ......+.+||+||||+|..+..++.. .|+..|..+ -+...+ ..+...+ ...
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccccccccc
Confidence 4555555666553210 011235789999999999766655543 899999988 444433 3333222 111
Q ss_pred EEEEcCc-ccC--C-CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 516 ISAVMGT-KRL--Q-FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 516 ~~~v~da-e~L--P-fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.....+- ..+ . +....||+|+++.+ +........++.-+.++|+|+|.++++.
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 2222221 111 1 23468999999986 4444555899999999999999988874
No 196
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.83 E-value=2.1e-05 Score=83.50 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC-ccceeccccccccCCCCccchhhhhccccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
.-.+|||+|||.|.++..|.+. +- -+|+-+|.. ..+..+.++- -+.++..=.+.+ ..+.+||+|+++..|....
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASW-QPPQALDLIFANASLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhcc-CCCCCccEEEEccChhhCC
Confidence 3467999999999999999764 11 234444543 5555554442 122332212222 1247999999988876544
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecCh----hhHHHHHHHHHcCCceE
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEP----SAVTEVENFLKSLHWEI 842 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~----~~~~~~~~~~~~l~W~~ 842 (870)
+...+|.+|-|+|||||.+++.-+. .....++.+.....|..
T Consensus 108 ---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 108 ---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 4567999999999999999997321 11223455555555643
No 197
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.83 E-value=6.4e-06 Score=86.77 Aligned_cols=97 Identities=9% Similarity=0.189 Sum_probs=64.2
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyP-rtyDllHa~ 790 (870)
..|||+|||.|.++..|.+. +- .+|+-+|.. ..|..+.++ |. +-+++ ..+..+| ..||+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEeee
Confidence 46999999999999888763 21 244555543 666665543 32 22333 2333333 468998887
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
.++..... -....+|-+|.|+|+|||.|+|.|..
T Consensus 130 ~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cchhhCCH-HHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 77665432 13457999999999999999999753
No 198
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.82 E-value=9.8e-06 Score=83.53 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=64.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc--cceeccccccccCCCCccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL--FGIYHDWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl--ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
..|||+|||.|.+...|.+..- -..++-+|.. ..+.....+.- +-.++.=.+.++..+.+||+|.+.++|....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence 5699999999999999987631 0112333332 44444444431 2233322234444458999999988776443
Q ss_pred cChhhHHHhhhhcccCCcEEEEec
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird 823 (870)
+...+|.++.|+|+|||++++..
T Consensus 113 -~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 -DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEe
Confidence 56789999999999999999975
No 199
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.81 E-value=0.00044 Score=75.62 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=96.3
Q ss_pred HHHHHhhhhhcCCCCCEEEEECCCCchhHHHHh-c-----CCEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcC-c---
Q 002884 454 FIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLF-E-----RDVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMG-T--- 522 (870)
Q Consensus 454 ~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La-~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~d-a--- 522 (870)
.|...+..+......-+||||.||.|....... . ..|...|+++..+...+ +.+.++|+..+ .+..+ +
T Consensus 122 ~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 122 LIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred HHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCH
Confidence 344443333233456799999999997543332 2 17889999998887776 57778888765 44443 2
Q ss_pred ccCCCCCCceeEEEecccccccccCh---HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcc-cccccchhHH
Q 002884 523 KRLQFPRNVFDLVHCARCRVPWHIDG---GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSN-LTVSMCWELV 598 (870)
Q Consensus 523 e~LPfpd~SFDlV~Ss~~alhw~~D~---~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~-la~~mcW~~v 598 (870)
..+.--.-..++++.+. ++....|- ...|.-+.++|.|||+|+++..|....+.-...+.....+ .+-.|.-+.-
T Consensus 201 ~~l~~l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq 279 (311)
T PF12147_consen 201 DSLAALDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQ 279 (311)
T ss_pred hHhhccCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCH
Confidence 22222234468888763 35544543 5678999999999999999987777666554444433211 2222333334
Q ss_pred HHHHHHHhhccce
Q 002884 599 TIKMDKLNSAGFA 611 (870)
Q Consensus 599 a~~~~~L~daGfa 611 (870)
.+....+..+||.
T Consensus 280 ~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 280 AEMDQLVEAAGFE 292 (311)
T ss_pred HHHHHHHHHcCCc
Confidence 4455555566665
No 200
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.81 E-value=0.00011 Score=85.17 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhhhcCC----CCCEEEEECCCCchhHHHHhc--------CCEEEEeCChhhHHHHHHHHHHHcCC-CcE
Q 002884 450 HYIDFIQQAVPKIAWGK----YTRVSLDVGCGVASFGGYLFE--------RDVLTMSFAPKDEHDAQIQFALERGI-PAI 516 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~----~~~~VLDIGCGtG~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~ergl-~~~ 516 (870)
.|.+.|...+....... +...|||||||+|.+....++ .+|++|+-++......+ +.....+. ..+
T Consensus 165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V 243 (448)
T PF05185_consen 165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKV 243 (448)
T ss_dssp HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTE
T ss_pred HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeE
Confidence 34444555555443322 256899999999987643322 38999999997654443 33234444 344
Q ss_pred EEEcC-cccCCCCCCceeEEEeccc-ccccccChHHHHHHHHhhcCCCcEEE
Q 002884 517 SAVMG-TKRLQFPRNVFDLVHCARC-RVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 517 ~~v~d-ae~LPfpd~SFDlV~Ss~~-alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.++.+ .+.+..|. .+|+|+|=.. .+...+-...+|....|.|||||.++
T Consensus 244 ~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 244 TVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 44444 56666554 7999999421 12222333678999999999999988
No 201
>PRK08317 hypothetical protein; Provisional
Probab=97.81 E-value=1.1e-05 Score=82.90 Aligned_cols=97 Identities=27% Similarity=0.380 Sum_probs=65.1
Q ss_pred cccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh--Cccceeccccccc--cCCC-Cccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER--GLFGIYHDWCESF--STYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR--Glig~~h~wce~f--~tyP-rtyDllHa~~lfS~ 795 (870)
..|||+|||.|.++..|++.- -. -+|+-+|.. ..+..+.++ +....++-.+..+ .+++ .+||+||+..+|..
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhc
Confidence 569999999999999887641 00 134444443 566666666 2211122121111 1243 79999999888876
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. +...+|-++-|+|+|||++++.+
T Consensus 100 ~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 65 46779999999999999999875
No 202
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.80 E-value=0.0002 Score=77.06 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEE-cCcccCCCC---CCceeE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AISAV-MGTKRLQFP---RNVFDL 534 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v-~dae~LPfp---d~SFDl 534 (870)
..++.+||+.|.|+|+++.+|+.. +|+..|+.......|+.++.. .|+. ++.+. .+...-.|. +..||.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccE
Confidence 357999999999999999998863 899999999988888865544 5554 44443 344333342 367999
Q ss_pred EEecccccccccChHHHHHHHHhhc-CCCcEEEEEEC
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVL-RPGGYFVWSAT 570 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVL-KPGG~Lv~S~~ 570 (870)
|+.-. +++..++..+.++| ||||+|++-.+
T Consensus 117 vfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 117 VFLDL------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 98742 57889999999999 99999998743
No 203
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.80 E-value=6.7e-06 Score=89.46 Aligned_cols=115 Identities=17% Similarity=0.293 Sum_probs=78.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH----HHhhCccceeccccccccC--CCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI----IYERGLFGIYHDWCESFST--YPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~----i~eRGlig~~h~wce~f~t--yPrtyDllHa~~lfS~ 795 (870)
..|||+|||.|.++.+|++.+. .|+-+|.. ..+.. +.+.|+ . ++..+..+.. .+..||+|.+..+|.+
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhh
Confidence 3699999999999999998874 55666654 44443 344566 2 2222222222 2689999999888765
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe---cCh-----------hhHHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR---DEP-----------SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir---d~~-----------~~~~~~~~~~~~l~W~~~~~ 845 (870)
.. +-.+..+|-+|.|+|+|||++++- +.. -...+++.+++. |++...
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 43 235778999999999999996553 111 114778888876 888654
No 204
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.80 E-value=1.1e-05 Score=85.95 Aligned_cols=99 Identities=8% Similarity=0.167 Sum_probs=65.8
Q ss_pred cccccccccchhHHhhhcC---CCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCC-Cccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKD---LQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYP-RSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~---~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyP-rtyDllHa~~lf 793 (870)
..|||+|||+|.++.+|+. .+- ..|+-+|.. .+|..+.+| |+..-+.-.|..+..+| ..||+|-+..+|
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4599999999999888765 222 145556654 666666554 33222222333334444 458998877666
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.+... .....+|-+|.|+|+|||.|++.|.
T Consensus 136 ~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 136 QFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 65432 3456799999999999999999974
No 205
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.80 E-value=9.6e-06 Score=92.07 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=66.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC--ccceeccccccccCCCCccchhhhhcccccccC
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG--LFGIYHDWCESFSTYPRSYDLLHADHLFSQLKN 798 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG--lig~~h~wce~f~tyPrtyDllHa~~lfS~~~~ 798 (870)
..|||+|||.|+++..|++. ++ .|+-++.. .++..+.+|. +. ++-.+..+...+.+||+|.+.++|.+...
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~--v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLP--VEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCe--EEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 46999999999999999864 54 44555543 6777766653 31 22122223334678999999888865432
Q ss_pred CcChhhHHHhhhhcccCCcEEEEec
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird 823 (870)
-.+..+|-++.|+|+|||++++.+
T Consensus 244 -~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 -KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 345679999999999999999964
No 206
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.78 E-value=0.00013 Score=79.01 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|+.+ +|+|+|+++.|+..+...+. .........+...+++++-.+|.|++|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEe
Confidence 35679999999999999999875 89999999999887764332 112334444556677654336889887
No 207
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.76 E-value=0.00017 Score=77.55 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..+...+.. .+.+. ...+...++++ .||.|+++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch--hceEEEEcC
Confidence 35789999999999999999875 899999999988877643322 23333 34455666665 489999984
No 208
>PRK14968 putative methyltransferase; Provisional
Probab=97.76 E-value=4.2e-05 Score=76.50 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=76.9
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hC-----ccceeccccccccCCCCccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RG-----LFGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RG-----lig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
-..|||+|||.|.++..|...+. +|+-++.. ..+....+ .| +.-+.+|+.+.+. +..||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--GDKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--ccCceEEEECC
Confidence 34699999999999999988743 55555543 44444422 13 3334446655432 24899986554
Q ss_pred cccccc------------------CCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEE
Q 002884 792 LFSQLK------------------NRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 lfS~~~------------------~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~ 844 (870)
-|.... .+..+..++.++.|+|+|||++++-... .....+...+....|++..
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 432210 1223557899999999999998876432 3357788889988998754
No 209
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.74 E-value=0.00024 Score=77.34 Aligned_cols=128 Identities=19% Similarity=0.314 Sum_probs=78.6
Q ss_pred CccccccHHHHHHHHHHHhhhhhcCC--CCCEEEEECCCCc----hhHHHHhc---------CCEEEEeCChhhHHHHHH
Q 002884 441 GTQFIHGALHYIDFIQQAVPKIAWGK--YTRVSLDVGCGVA----SFGGYLFE---------RDVLTMSFAPKDEHDAQI 505 (870)
Q Consensus 441 gt~F~~gA~~Yid~L~~~Lp~i~~g~--~~~~VLDIGCGtG----~~a~~La~---------r~VtgVDiSp~ml~~A~v 505 (870)
-|.|.+...++..+-...+|.+.... ..-+|+-+||++| ++|..|.+ -+|+|.|++...+..|..
T Consensus 68 ~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 68 VTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 34555666665555444455433222 3668999999999 34444332 179999999998887753
Q ss_pred HH----HHHcCCC-------------c-----------E-EEEcCcccCCCCCCceeEEEecccccccccCh-HHHHHHH
Q 002884 506 QF----ALERGIP-------------A-----------I-SAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG-GKLLLEL 555 (870)
Q Consensus 506 q~----A~ergl~-------------~-----------~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~-~~vL~Ei 555 (870)
-. ...++++ . + +...+...-++..+.||+|+|.++++-+.... ..++..+
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f 227 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRF 227 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHH
Confidence 21 1112221 0 0 01111111121345699999987755554333 7899999
Q ss_pred HhhcCCCcEEEEE
Q 002884 556 NRVLRPGGYFVWS 568 (870)
Q Consensus 556 ~RVLKPGG~Lv~S 568 (870)
+..|+|||+|++.
T Consensus 228 ~~~L~~gG~LflG 240 (268)
T COG1352 228 ADSLKPGGLLFLG 240 (268)
T ss_pred HHHhCCCCEEEEc
Confidence 9999999999996
No 210
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.73 E-value=1.6e-05 Score=85.74 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=61.6
Q ss_pred cccccccccchhHHhhhcCC-C-eEEEEeccCCCC-CChhHHHhhCc-cceeccccccccCCC-Cccchhhhhccccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q-VWVMNVVNVNSP-DTLPIIYERGL-FGIYHDWCESFSTYP-RSYDLLHADHLFSQLK 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~-vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h~wce~f~tyP-rtyDllHa~~lfS~~~ 797 (870)
..|||+|||.|.+++.|.+. + .--.+|+-+|.. ..+..+.+|.- +.+.+.-.+.+ +|+ .+||+|.+ +|+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~--~~~--- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIR--IYA--- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEE--ecC---
Confidence 56999999999999998754 1 101256667765 77777766631 22233222333 454 79999986 332
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
...+-|+.|+|+|||+||+..+.
T Consensus 161 -----~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 -----PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred -----CCCHHHHHhhccCCCEEEEEeCC
Confidence 22468999999999999998653
No 211
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.73 E-value=1.8e-05 Score=87.66 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=61.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH---HHh----hCccceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI---IYE----RGLFGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~---i~e----RGlig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
+.|||+|||.|.++.+|+..+.- .|+-+|.. ..+.. +.. .+.+.+...=.+.++ .+.+||+|-|.+++-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-ELYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-CCCCcCEEEEcchhh
Confidence 67999999999999988877541 34444433 23221 111 112222221123322 235899999988876
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+. -++..+|.|+-|+|||||.|||.
T Consensus 200 H~---~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HR---KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cc---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 54 46778999999999999999986
No 212
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=2.3e-05 Score=84.96 Aligned_cols=99 Identities=24% Similarity=0.242 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccccccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVPWHI 546 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~ 546 (870)
.+..+||+|||.|.....-....++|.|++...+.. ++..|.. ...+.++..+|+.+.+||.+++... +||..
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~-----ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiav-ihhls 117 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGG-----AKRSGGD-NVCRADALKLPFREESFDAALSIAV-IHHLS 117 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhhhccc-----cccCCCc-eeehhhhhcCCCCCCccccchhhhh-hhhhh
Confidence 477999999999965543333468999988764433 3333332 4567778899999999999999754 55542
Q ss_pred ---ChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 547 ---DGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 547 ---D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
....++.|+.|+|||||..++.+...
T Consensus 118 T~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 118 TRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 23789999999999999977764333
No 213
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.71 E-value=5.1e-05 Score=77.27 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccc------cCCC-Cccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESF------STYP-RSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f------~tyP-rtyDllHa~ 790 (870)
.+|||+|||.|+++.+|..+ .|+..=+.|.. . -.|+--+..|..+.. ..+| .+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 46999999999998877643 25554444321 0 123322223554321 1244 679997765
Q ss_pred ccc------cc--ccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEEe-----ecCCCceEEEE
Q 002884 791 HLF------SQ--LKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILFA-----FSKDQEGVLSA 856 (870)
Q Consensus 791 ~lf------S~--~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~~-----~~~~~e~iL~~ 856 (870)
+.. +. ....+.+..+|.++.|+|||||.+++- .....+..+-..++..=|.+.+. ...+-|++|||
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVA 185 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEE
Confidence 421 11 111123467999999999999999994 22222222222222222445443 12246899998
Q ss_pred E
Q 002884 857 Q 857 (870)
Q Consensus 857 ~ 857 (870)
.
T Consensus 186 ~ 186 (188)
T TIGR00438 186 K 186 (188)
T ss_pred e
Confidence 5
No 214
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.70 E-value=0.00025 Score=75.87 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCcee---EEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFD---LVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFD---lV~Ss 538 (870)
.++.+|||||||+|.++..|+.+ .|+++|+++.++..+...... .........+...++++ .|| +|+++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 35789999999999999999875 899999999988776533321 11223334455666665 466 88876
No 215
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.69 E-value=2.4e-05 Score=81.36 Aligned_cols=120 Identities=20% Similarity=0.299 Sum_probs=84.9
Q ss_pred cCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC
Q 002884 437 FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP 514 (870)
Q Consensus 437 FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~ 514 (870)
|-|.|.+|--....+..+|.-.- -.++....++||+|+|.|.++..++.. .|.+.++|..|..+-+ ..+..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~-----kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLK-----KKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCC--CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHh-----hcCCc
Confidence 66778888777766666554221 234556789999999999999999886 8899999888765432 33332
Q ss_pred cEEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCC-CcEEEEE
Q 002884 515 AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRP-GGYFVWS 568 (870)
Q Consensus 515 ~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKP-GG~Lv~S 568 (870)
. .... ..--.+-.||+|.|-. ++.-|.++..+|..|+.+|+| .|.++++
T Consensus 157 V-l~~~---ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 V-LTEI---EWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred e-eeeh---hhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 1 1111 1111234599999964 477778899999999999999 8988876
No 216
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.68 E-value=0.00019 Score=81.67 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEeccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss~~al 542 (870)
..+|||++||+|.++..++.. .|+++|+++..+..++. .+...++....+.. +...+......||+|+...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDP--- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC---
Confidence 468999999999999888642 69999999998887764 44445565443333 3333211145699999863
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ -.+..+|..+.+.++|||+++++.+.
T Consensus 134 -~-Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 134 -F-GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred -C-CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 2 23467788878889999999999543
No 217
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00043 Score=75.88 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=72.7
Q ss_pred HHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC---CCcEEEEc-Cc-ccCC
Q 002884 456 QQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG---IPAISAVM-GT-KRLQ 526 (870)
Q Consensus 456 ~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg---l~~~~~v~-da-e~LP 526 (870)
...++.+..+.+ ++||-||.|.|..++.+++. +++.+||++..+..++.-+..-.+ -+....+. |. .-+.
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR 144 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH
Confidence 334444445554 79999999999999999886 899999999877665533322221 12223333 32 3333
Q ss_pred CCCCceeEEEecccccccccCh------HHHHHHHHhhcCCCcEEEEE
Q 002884 527 FPRNVFDLVHCARCRVPWHIDG------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alhw~~D~------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-....||+|++- +.=+ ..+ ..+++.++|+|+++|+++..
T Consensus 145 ~~~~~fDvIi~D-~tdp--~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 145 DCEEKFDVIIVD-STDP--VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred hCCCcCCEEEEc-CCCC--CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 223489999985 2111 122 68999999999999999987
No 218
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.67 E-value=2.3e-05 Score=71.00 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=48.5
Q ss_pred ccccccchhHHhhhcCC--C--eEEEEeccCCCCCChhHHHhhCcc--ceecc-ccccccCCC-Cccchhhhhccccccc
Q 002884 726 MDMRAVYGGFAAALKDL--Q--VWVMNVVNVNSPDTLPIIYERGLF--GIYHD-WCESFSTYP-RSYDLLHADHLFSQLK 797 (870)
Q Consensus 726 mDm~ag~GgfaaaL~~~--~--vwvmNvvp~~~~~tl~~i~eRGli--g~~h~-wce~f~tyP-rtyDllHa~~lfS~~~ 797 (870)
||+|||.|.+..+|.+. . |..+-+.|.--......+.+.+.. ..+.- --+.+...+ .+||+|.+.++|.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999876 2 344444433322112234443422 12222 222333333 599999999999988
Q ss_pred CCcChhhHHHhhhhcccCCcEE
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKL 819 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~ 819 (870)
=++..+|..+.|+|||||.|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 36778999999999999986
No 219
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.67 E-value=2.5e-05 Score=81.56 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=68.0
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCccceeccccccc------cCC-CCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESF------STY-PRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f------~ty-PrtyDllHa~ 790 (870)
..|||+|||+|+|+..|++. .|..+-+.|.. .+ .|+.-+..|+...- ..+ +.+||+|-++
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---~~-----~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---PI-----VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---CC-----CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 46999999999999888665 23333333311 11 23222222333210 123 3689998885
Q ss_pred cccccccCC--------cChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEe-ecCCCceEEEE
Q 002884 791 HLFSQLKNR--------CKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFA-FSKDQEGVLSA 856 (870)
Q Consensus 791 ~lfS~~~~r--------c~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~-~~~~~e~iL~~ 856 (870)
......... +.+..+|-++-|+|+|||.|++-.- .+++..++..+...++---.. .....|.++||
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence 432211111 1135689999999999999999532 222233322222222211000 12247899998
Q ss_pred Ee
Q 002884 857 QK 858 (870)
Q Consensus 857 ~K 858 (870)
..
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 74
No 220
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.65 E-value=0.00059 Score=70.41 Aligned_cols=92 Identities=25% Similarity=0.283 Sum_probs=67.4
Q ss_pred EEEEECCCCchhHHHHh----cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEeccccccc
Q 002884 470 VSLDVGCGVASFGGYLF----ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCRVPW 544 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La----~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~alhw 544 (870)
++||||+|.|.-+..|+ +.+++.+|....-...-. ..+.+.+++++..+.+ .+. +.....||+|++.. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~-~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA--v-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLK-EVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA--V-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHH-HHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES--S--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHH-HHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh--h--
Confidence 89999999997554443 458999999887554332 4556678887666665 455 55678899999963 2
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.....++.-+.+.|++||.+++.
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEE
Confidence 35678888899999999999986
No 221
>PLN02823 spermine synthase
Probab=97.65 E-value=0.00041 Score=77.77 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc---CCCcEEEEc-Cc-ccCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER---GIPAISAVM-GT-KRLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er---gl~~~~~v~-da-e~LPfpd~SFDlV~S 537 (870)
..++||.||+|.|..++.+++. +|+++|+++.++..++..+.... .-+.+.++. |. .-+....+.||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4679999999999999887763 79999999998877764433211 113333333 33 333444678999998
Q ss_pred cccccccc------cChHHHHH-HHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWH------IDGGKLLL-ELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~------~D~~~vL~-Ei~RVLKPGG~Lv~S 568 (870)
-. .-++. -....++. .+.++|+|||+|++.
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 52 12221 11246777 899999999999876
No 222
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.64 E-value=1.5e-05 Score=84.11 Aligned_cols=123 Identities=21% Similarity=0.304 Sum_probs=93.9
Q ss_pred cccccccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccce-ecccccccc--CCCCccchhhhhcc
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGI-YHDWCESFS--TYPRSYDLLHADHL 792 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~-~h~wce~f~--tyPrtyDllHa~~l 792 (870)
.+-+.+|-+||+|||+|-+|-+|+++-- -+.=+|-+ |+|.+++|+|++-. ||.=-..|. .=++-||||-|..|
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 3445589999999999999999987611 12233555 99999999998754 444444576 45799999999999
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecCh------hh----------HHHHHHHHHcCCceEEEe
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP------SA----------VTEVENFLKSLHWEILFA 845 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~------~~----------~~~~~~~~~~l~W~~~~~ 845 (870)
|..+. .++.++.=+.+.|.|||.|+|+-.. .+ -..|+..+.+-..+++..
T Consensus 198 l~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 198 LPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred HHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 99876 4888999999999999999999321 01 367788888888887644
No 223
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.61 E-value=0.00048 Score=70.37 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=70.2
Q ss_pred HHHHhhhhhcCCCCCEEEEECCCCchhHHHHh--cC--C---------EEEEeCChhhHHHHHHHHHHHcCCCc--EEEE
Q 002884 455 IQQAVPKIAWGKYTRVSLDVGCGVASFGGYLF--ER--D---------VLTMSFAPKDEHDAQIQFALERGIPA--ISAV 519 (870)
Q Consensus 455 L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La--~r--~---------VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v 519 (870)
|+..+..+..-.++..|||--||+|.+....+ .. . ++|.|+++.++..|.. .+...++.. .+..
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~-N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE-NLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-HHHHTT-CGGEEEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-HHHhcccCCceEEEe
Confidence 33333333333567899999999998774332 22 3 7799999999988874 455556543 3344
Q ss_pred cCcccCCCCCCceeEEEecccccccccCh----------HHHHHHHHhhcCCCcEEEEE
Q 002884 520 MGTKRLQFPRNVFDLVHCARCRVPWHIDG----------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 520 ~dae~LPfpd~SFDlV~Ss~~alhw~~D~----------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+...+|+.++++|+|+++. +|-... ..++.++.|+|++..+++++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 46788998889999999973 554221 36789999999995555555
No 224
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.61 E-value=0.00039 Score=76.60 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCCCCCCceeEEEec
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LPfpd~SFDlV~Ss 538 (870)
.++.+|||||||+|.++..|++. .|+++|+++.++..+...++.....+...++. |....++ ..||+|+++
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVAN 108 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEec
Confidence 45789999999999999999875 79999999999888775444322123344444 4444444 368999987
No 225
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.59 E-value=6.1e-05 Score=77.46 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=70.4
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCcc---ceec-cccccccCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLF---GIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGli---g~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
.|||||||.|.|+.+++..----..|+-+|.. ..+..+.+ -|+. -+++ |..+.+..++..||+|.+.+
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~--- 119 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG--- 119 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---
Confidence 59999999999988764320001134444543 44444332 2432 2222 33332223345788876532
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
....+..+|-++.|+|+|||.+++. -..+.+.++...++.+.++..+.
T Consensus 120 ---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 120 ---GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred ---CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 1235678999999999999999983 34556678888888777766543
No 226
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.58 E-value=0.00018 Score=77.33 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCc--ccCCC------CCCce
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGT--KRLQF------PRNVF 532 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~da--e~LPf------pd~SF 532 (870)
..++||+||+++|.-+..|+.. +|+++|+++.....|+..+. ..|+ ..+.++.+. +.|+- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~-~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ-KAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4679999999999877777642 79999999988777764444 3454 334444442 33331 13689
Q ss_pred eEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 533 DLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 533 DlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
|+|+.-. +......++..+.+.|+|||++++-...
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 9999752 3344578888889999999999986443
No 227
>PRK05785 hypothetical protein; Provisional
Probab=97.57 E-value=3.8e-05 Score=81.06 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=66.5
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCC
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~r 799 (870)
..|||+|||+|-++.+|.+. +. +|+-+|-. ++|....+++ ..++..++.+ +|| .+||+|.+...+- .-
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l-p~~d~sfD~v~~~~~l~---~~ 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEAL-PFRDKSFDVVMSSFALH---AS 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhC-CCCCCCEEEEEecChhh---cc
Confidence 47999999999999999877 33 67778865 8888887774 3456666775 454 8999999865543 33
Q ss_pred cChhhHHHhhhhcccCCc
Q 002884 800 CKLVPVMAEVDRIVRPGG 817 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG 817 (870)
-+++.+|-||.|||||.+
T Consensus 124 ~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCHHHHHHHHHHHhcCce
Confidence 467889999999999954
No 228
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.56 E-value=4.9e-05 Score=77.76 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=63.2
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCc----cceec-cccccccCCCCccchhhhhccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGL----FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGl----ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
-.+|||+|||.|.++.+|....-=.-.++-+|.. ..+..+.++.- +-+++ +..+ .+.-+.+||+|++.+++..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCC
Confidence 3579999999999999887552100123333432 45555555431 23333 3332 2322368999998766643
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. ..+..+|.++.++|||||++++.+
T Consensus 119 ~---~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 V---TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred c---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 357789999999999999999864
No 229
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.56 E-value=4.1e-05 Score=82.14 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=59.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Ccc--ceec-cccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GLF--GIYH-DWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gli--g~~h-~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||.|..+..+... +. -..|+-+|.. ..+..+.++ |+- -+++ ++ +.+ ++| .+||+|+++.+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEcCc
Confidence 47999999998765443322 11 0123334433 556555543 331 1222 22 333 344 79999999877
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|.+.. +...+|-|+-|+|||||.|+|.+
T Consensus 156 ~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 75432 45679999999999999999975
No 230
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.56 E-value=7.7e-05 Score=78.27 Aligned_cols=116 Identities=20% Similarity=0.347 Sum_probs=74.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCcc--ceec-cccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLF--GIYH-DWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h-~wce~f~tyP-rtyDllHa~~l 792 (870)
..|||+|||.|.|+.+|+.. +- .+|+-+|.. ..+..+ ...|+- -+++ |+- ..++ ..||+|.++--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~---~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF---EPLPGGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh---ccCcCCceeEEEECCC
Confidence 36999999999999999875 22 144444432 333333 234552 2333 332 3444 78999988644
Q ss_pred ccccc------CCcC-----------------hhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 793 FSQLK------NRCK-----------------LVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 793 fS~~~------~rc~-----------------~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
|.... ..+. ...++-++-|+|+|||++++.........++.++....|...
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 43211 1010 135788999999999999998766667788888888888653
No 231
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00014 Score=77.16 Aligned_cols=102 Identities=24% Similarity=0.286 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCc--ccC-CCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGT--KRL-QFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~da--e~L-Pfpd~SFDlV~S 537 (870)
+.+.+|||...|-|.++...+++ .|+.++.+|.-+..|.++ ...+++. ++..+.++ +-. .|+|.+||+|+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lN-PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLN-PWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccC-CCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 45889999999999998877765 789999999866544321 1111211 23344442 222 488999999986
Q ss_pred ccccccccc--ChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHI--DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~--D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-.-.+...- ....+.+|++|+|||||.++--
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 322222212 2368899999999999999854
No 232
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.53 E-value=0.00051 Score=80.20 Aligned_cols=104 Identities=15% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCcccCC-CCCCceeEEE--
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKRLQ-FPRNVFDLVH-- 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~LP-fpd~SFDlV~-- 536 (870)
.++.+|||++||.|.=+..|+.. .|+++|+++..+...+ +.+.+.|+.++... .+...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 57889999999999766555542 7999999998776655 45555687764443 3434332 2245799999
Q ss_pred --ecccc-c--------ccccCh--------HHHHHHHHhhcCCCcEEEEEEC
Q 002884 537 --CARCR-V--------PWHIDG--------GKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 537 --Ss~~a-l--------hw~~D~--------~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+... + .|.... ..+|..+.++|||||+|+.|+.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 44211 1 121110 3678899999999999999943
No 233
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.51 E-value=0.00042 Score=75.45 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcC-----------------
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERG----------------- 512 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~erg----------------- 512 (870)
++.|...++.........+||--|||.|+++-.++.+ .+.|.++|-.|+-... +.....
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccC
Confidence 3445555543222344679999999999999999987 8999999999975433 332210
Q ss_pred ------------CC------------cEEEEcCc-ccCCCC---CCceeEEEecccccccccChHHHHHHHHhhcCCCcE
Q 002884 513 ------------IP------------AISAVMGT-KRLQFP---RNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGY 564 (870)
Q Consensus 513 ------------l~------------~~~~v~da-e~LPfp---d~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~ 564 (870)
+| ......++ ..+..+ .++||+|++.+ .+.-..+.-.+|..|.++|||||+
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGY 197 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCE
Confidence 00 01111111 111112 26899999864 244445568999999999999998
Q ss_pred EEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHhhccceEEEecC
Q 002884 565 FVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLNSAGFAIYRKPT 617 (870)
Q Consensus 565 Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~daGfaI~rkgf 617 (870)
++=.+|..|..-+-. .-.+..-.+.|..+ ...+...||.+.....
T Consensus 198 WIN~GPLlyh~~~~~-----~~~~~sveLs~eEi---~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 198 WINFGPLLYHFEPMS-----IPNEMSVELSLEEI---KELIEKLGFEIEKEES 242 (270)
T ss_pred EEecCCccccCCCCC-----CCCCcccCCCHHHH---HHHHHHCCCEEEEEEE
Confidence 886655555433210 00111122344434 4455668999887544
No 234
>PRK04148 hypothetical protein; Provisional
Probab=97.50 E-value=0.00059 Score=67.14 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCch-hHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGVAS-FGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGtG~-~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss~~al 542 (870)
++.+|||||||.|. ++..|.+. .|+++|+++..+ +.+++.+.. ..+.|...-.+. -..+|+|++.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~~--~v~dDlf~p~~~~y~~a~liysirp-- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGLN--AFVDDLFNPNLEIYKNAKLIYSIRP-- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCCe--EEECcCCCCCHHHHhcCCEEEEeCC--
Confidence 46789999999995 88888875 999999999844 344455542 233333222221 245999999753
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECCCcC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATPVYQ 574 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~ 574 (870)
..+....+.++.+.+ |.-|++. +...+
T Consensus 87 --p~el~~~~~~la~~~--~~~~~i~-~l~~e 113 (134)
T PRK04148 87 --PRDLQPFILELAKKI--NVPLIIK-PLSGE 113 (134)
T ss_pred --CHHHHHHHHHHHHHc--CCCEEEE-cCCCC
Confidence 234455666666544 4556665 54444
No 235
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.50 E-value=3.5e-05 Score=75.56 Aligned_cols=96 Identities=18% Similarity=0.392 Sum_probs=67.8
Q ss_pred cccccccccchhHHhhhcC-C--CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC-CCCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKD-L--QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST-YPRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~-~--~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t-yPrtyDllHa~ 790 (870)
-+|||+|||+|-++-.|++ . +. +++-+|-. ..+..+.. .|+ +-+++ |+-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4699999999999999983 2 33 24444544 55555555 465 34554 4544 332 56899999998
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
++|- .-.....+|.+|-|+|+|||.+|+++..
T Consensus 81 ~~l~---~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLH---HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGG---GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchh---hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8883 2245667899999999999999999876
No 236
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.50 E-value=0.0021 Score=66.41 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=63.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC-c-EEEEcCc-ccCC-C-CC-CceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP-A-ISAVMGT-KRLQ-F-PR-NVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~-~-~~~v~da-e~LP-f-pd-~SFDlV~S 537 (870)
.+.+|||++||+|.++..++.+ .|+++|.++..+..++.. +...++. . .+...+. ..+. + .. ..||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N-~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKEN-LALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999988875 799999999888776643 3334443 2 2333343 2222 1 12 24788887
Q ss_pred cccccccccC-hHHHHHHH--HhhcCCCcEEEEE
Q 002884 538 ARCRVPWHID-GGKLLLEL--NRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D-~~~vL~Ei--~RVLKPGG~Lv~S 568 (870)
-. +|... ...++..+ ..+|+++|++++.
T Consensus 128 DP---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 128 DP---PFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred Cc---CCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 53 22222 24444444 3479999999987
No 237
>PRK00536 speE spermidine synthase; Provisional
Probab=97.49 E-value=0.0013 Score=71.49 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHH---HcCCCcEEEEcCcccC
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFAL---ERGIPAISAVMGTKRL 525 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~---ergl~~~~~v~dae~L 525 (870)
|.+.|.. ++... ....++||=||.|.|..++.+++. +|+-+||++.++..++.-+.. ...-|....+....
T Consensus 58 YHEmLvH-ppl~~-h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~-- 133 (262)
T PRK00536 58 ESELLAH-MGGCT-KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL-- 133 (262)
T ss_pred HHHHHHH-HHHhh-CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--
Confidence 4444433 33333 345789999999999999999987 799999999887666531111 11122332332111
Q ss_pred CCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 526 QFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.-..+.||+|++-. + ....+++.++|+|+|||+|+...
T Consensus 134 ~~~~~~fDVIIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 134 DLDIKKYDLIICLQ-E-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hccCCcCCEEEEcC-C-----CChHHHHHHHHhcCCCcEEEECC
Confidence 11236899999852 1 34688899999999999999864
No 238
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.49 E-value=1.5e-05 Score=82.59 Aligned_cols=135 Identities=19% Similarity=0.308 Sum_probs=81.8
Q ss_pred cccccccccccccccchhHHhhhcCC--CeEEEEeccCCCCCChhHHHhh--Cccceecccc-ccccC-CC-Cccchhhh
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSPDTLPIIYER--GLFGIYHDWC-ESFST-YP-RSYDLLHA 789 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~~tl~~i~eR--Glig~~h~wc-e~f~t-yP-rtyDllHa 789 (870)
+.-.+|++++++|||-|-|.+.|+.+ .+.++-++|. -|..+.+| |+..+ .|- -.++. +| .+|||||.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V--~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHV--EWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSE--EEEES-TTT---SS-EEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCe--EEEECcCCCCCCCCCeeEEEE
Confidence 45578999999999999999999988 4555555443 44444443 22211 121 12222 35 89999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh----------HHHHHHHHHcCCceEEEe---ecCCCceEEEE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA----------VTEVENFLKSLHWEILFA---FSKDQEGVLSA 856 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~----------~~~~~~~~~~l~W~~~~~---~~~~~e~iL~~ 856 (870)
..||-.+.+.-.+..++-.|...|+|||.+|+-.-.+. -+.|..++...-=++.-. .....|.-|++
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLA 192 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEee
Confidence 99999887656777899999999999999999753221 245555555544444322 22234555554
Q ss_pred E
Q 002884 857 Q 857 (870)
Q Consensus 857 ~ 857 (870)
+
T Consensus 193 ~ 193 (201)
T PF05401_consen 193 R 193 (201)
T ss_dssp E
T ss_pred e
Confidence 3
No 239
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.48 E-value=6.5e-05 Score=78.52 Aligned_cols=95 Identities=16% Similarity=0.306 Sum_probs=65.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cccceec--cccccccCCCCccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYH--DWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h--~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
.|||+|||.|.++..|.+.+. +++-++.. ..+..+.++ |+...++ ++.+-....+.+||+|.+.++|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 599999999999999987753 45555544 444444443 4322222 3432222234789999998887765
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
. +...+|.++.|+|+|||.+++...
T Consensus 128 ~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 P---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 4 456789999999999999999853
No 240
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.45 E-value=0.00012 Score=75.28 Aligned_cols=118 Identities=13% Similarity=0.159 Sum_probs=72.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCcc--ceecccccccc--CCC-Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLF--GIYHDWCESFS--TYP-RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h~wce~f~--tyP-rtyDllHa~~ 791 (870)
+.|||+|||.|.|+.+|+.. +- .||+-+|.. ..+..+ ...|+- -+++.=...+. .+| .++|+|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999999865 22 255555543 444333 344553 22332222222 245 5899887632
Q ss_pred cc---c--cccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCC-ceE
Q 002884 792 LF---S--QLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLH-WEI 842 (870)
Q Consensus 792 lf---S--~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~-W~~ 842 (870)
-. . +.+.|+....+|-++-|+|||||.|++. |.......+...+.... |+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 11 1 1224566678999999999999999886 66666666666665543 544
No 241
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.45 E-value=0.0011 Score=75.01 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=62.2
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CC-CC--------------C
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQ-FP--------------R 529 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LP-fp--------------d 529 (870)
.+|||++||+|.++..|+.. .|+++|+++.++..++ +.+...++.++.++.+ ... ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988874 8999999999998877 4455566655544443 322 21 10 2
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..||+|+...- ...-...++..+. +|+++++++-
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEe
Confidence 25899987531 1111134444444 4799999984
No 242
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.44 E-value=0.00018 Score=76.85 Aligned_cols=132 Identities=18% Similarity=0.277 Sum_probs=79.7
Q ss_pred cccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh---Cc---cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER---GL---FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR---Gl---ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|+... - ..|+-+|.. ..+..+.+. ++ +-+++ |+.+.+. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 369999999999999997652 2 134444443 444444432 22 22333 4433321 3789998775322
Q ss_pred cccc------C--------------C---cChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceE-EEe-ecC
Q 002884 794 SQLK------N--------------R---CKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEI-LFA-FSK 848 (870)
Q Consensus 794 S~~~------~--------------r---c~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~-~~~-~~~ 848 (870)
.... . . =.+..++.++-++|+|||++++--.......++.++....|.. ... +-.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLA 265 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCC
Confidence 1100 0 0 0124677888899999999999654444567888888777753 221 444
Q ss_pred CCceEEEEEe
Q 002884 849 DQEGVLSAQK 858 (870)
Q Consensus 849 ~~e~iL~~~K 858 (870)
+.+++++++|
T Consensus 266 ~~~r~~~~~~ 275 (275)
T PRK09328 266 GRDRVVLGRR 275 (275)
T ss_pred CCceEEEEEC
Confidence 6788888765
No 243
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.43 E-value=0.0014 Score=70.47 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcC---CCcEEEEc-
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERG---IPAISAVM- 520 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~erg---l~~~~~v~- 520 (870)
..|.+.|... +... ....++||=||.|.|..++.|.+. .|+++|+++..+..++.-+..... -+....+.
T Consensus 60 ~~y~e~l~h~-~~~~-~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~ 137 (246)
T PF01564_consen 60 FIYHEMLVHP-PLLL-HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG 137 (246)
T ss_dssp HHHHHHHHHH-HHHH-SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES
T ss_pred HHHHHHHhhh-Hhhc-CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh
Confidence 4555555433 3222 235789999999999999999875 799999999988777654443322 13344443
Q ss_pred Cc-ccCCCCCC-ceeEEEecccccccccC----hHHHHHHHHhhcCCCcEEEEEE
Q 002884 521 GT-KRLQFPRN-VFDLVHCARCRVPWHID----GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 521 da-e~LPfpd~-SFDlV~Ss~~alhw~~D----~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|. .-+--..+ .||+|+.-.. -+.... ...+++.+.++|+|||+|++..
T Consensus 138 Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 138 DGRKFLKETQEEKYDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp THHHHHHTSSST-EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHhccCCcccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 33 12222223 8999998532 122111 2689999999999999999874
No 244
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.42 E-value=8.3e-05 Score=76.93 Aligned_cols=96 Identities=16% Similarity=0.288 Sum_probs=64.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceecccccccc-CCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFS-TYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~-tyPrtyDllHa~~lfS 794 (870)
.+|||+|||.|.++..|.+.+. .++-++.. ..+..+..+ |+ +.+.+.-.+.+. ..|.+||+|.+.++|.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4699999999999998876643 23334433 344444332 33 333332222222 2357999999988776
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
... ++..+|-++.|+|+|||.+++...
T Consensus 124 ~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 543 567799999999999999998753
No 245
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.40 E-value=0.00016 Score=81.17 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=77.5
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhC---ccceeccccccccCCCCccchhhhhccccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERG---LFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRG---lig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
..|||+|||+|.++..|.+. +- .+|+-+|.. .++..+.++. -+.+++.-.+.++.-+.+||+|-+.++|....
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 46999999999998887653 21 134445543 5666665542 13344433344333347999998877776544
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEecChh-----------------hHHHHHHHHHcCCceEEE
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVRDEPS-----------------AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iird~~~-----------------~~~~~~~~~~~l~W~~~~ 844 (870)
+...+|-|+-|+|||||.++|.+... ..+++..++++..++...
T Consensus 193 ---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 193 ---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 34579999999999999998865321 236677788888887643
No 246
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.39 E-value=0.0002 Score=80.43 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=78.9
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCccceeccccccccCCCCccchhhhhccccccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLK 797 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~ 797 (870)
.|||+|||+|.++++|.++ +- ..|+-+|.. ..|..+ ...|+-+.++ ++..+...+..||+|-++-.|-...
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 4999999999999999876 31 123333433 233222 2334443332 3333444568999999977663211
Q ss_pred --CCcChhhHHHhhhhcccCCcEEEEecC--hhhHHHHHHHHHcCCceEEEeecCCCceEEEEEeC
Q 002884 798 --NRCKLVPVMAEVDRIVRPGGKLIVRDE--PSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKG 859 (870)
Q Consensus 798 --~rc~~~~vl~EmDRILRPgG~~iird~--~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K~ 859 (870)
..-....++.++-|.|+|||.++|-.+ ..+...++..+... ++ .....+-+|+-|+|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~--la~~~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EV--LAQTGRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EE--EEeCCCEEEEEEEcc
Confidence 112346789999999999999988643 33345555555442 22 234567788888763
No 247
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00048 Score=71.18 Aligned_cols=69 Identities=23% Similarity=0.212 Sum_probs=48.6
Q ss_pred CCCEEEEECCCCchhH--HHHhc-CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFG--GYLFE-RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a--~~La~-r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+++|||+|||||.++ ..++. ..|+++|+++..+..+. +.+.+.+....+.+.+.... ...||.|+.|.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDF---RGKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhc---CCccceEEECC
Confidence 5778999999999754 55555 49999999999888776 34444444444555554444 35588888874
No 248
>PRK04266 fibrillarin; Provisional
Probab=97.36 E-value=0.00036 Score=74.01 Aligned_cols=129 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----Hhh-Cccceeccccccc--cCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YER-GLFGIYHDWCESF--STYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eR-Glig~~h~wce~f--~tyPrtyDllHa~~lfS 794 (870)
.|||+|||.|++..+|.+. +- -.|.-+|.. .+|..+ .++ ++..+..|-.... ...+.+||+|-++
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~--g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d---- 148 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEE--GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD---- 148 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCC--CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC----
Confidence 4999999999999999875 10 023333433 333322 222 3334444544321 1234668875321
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe------cC----hhhHHHHHHHHHcCCceEEEe-ec---CCCceEEEEEeC
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR------DE----PSAVTEVENFLKSLHWEILFA-FS---KDQEGVLSAQKG 859 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir------d~----~~~~~~~~~~~~~l~W~~~~~-~~---~~~e~iL~~~K~ 859 (870)
....=....+|.|+-|+|||||+++|. |. ......+...+.....+.... +. ....-++|++|+
T Consensus 149 -~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~~ 226 (226)
T PRK04266 149 -VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226 (226)
T ss_pred -CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEcC
Confidence 110001123578999999999999993 32 122233445666555555432 11 224567777663
No 249
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.34 E-value=7.1e-05 Score=77.64 Aligned_cols=115 Identities=20% Similarity=0.329 Sum_probs=77.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-----CChhHHHhhCccceeccccccccCC--CCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESFSTY--PRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f~ty--PrtyDllHa~~lfS~ 795 (870)
-.|||+|||-|--|.+|+++|. .|..+|.. ....++-.+||- ++.++..+.++ |..||+|.+..+|-+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMF 106 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEecc
Confidence 3599999999999999999998 44555543 233345567775 55445444444 689999998877766
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe---cC--------hhh---HHHHHHHHHcCCceEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR---DE--------PSA---VTEVENFLKSLHWEILFA 845 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir---d~--------~~~---~~~~~~~~~~l~W~~~~~ 845 (870)
++ |-.+..|+..|-.-|+|||+++|- +. ... ..+|+..+. .|++...
T Consensus 107 L~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred CC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 65 346778999999999999998883 11 112 266777777 5998653
No 250
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.33 E-value=8e-05 Score=80.49 Aligned_cols=99 Identities=12% Similarity=0.218 Sum_probs=68.1
Q ss_pred cccccccccchh----HHhhhcCCC----eEEEEeccCCCC-CChhHHHhhCccc-------------------------
Q 002884 723 RNVMDMRAVYGG----FAAALKDLQ----VWVMNVVNVNSP-DTLPIIYERGLFG------------------------- 768 (870)
Q Consensus 723 RnvmDm~ag~Gg----faaaL~~~~----vwvmNvvp~~~~-~tl~~i~eRGlig------------------------- 768 (870)
-.|+|+|||+|- .|..|.+.. -|-..|+-+|-. ..|..+. +|+++
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 469999999994 566665431 245578888866 6665554 33321
Q ss_pred ----------eeccccccccCC-CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 769 ----------IYHDWCESFSTY-PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 769 ----------~~h~wce~f~ty-PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
..||.++. .+ +..||+|.|.++|-.... -....+|-++.|+|+|||+++|-...
T Consensus 180 ~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 180 KPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred ChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 13455542 23 489999999888876532 23457999999999999999997644
No 251
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.31 E-value=0.00015 Score=62.78 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=61.0
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---hhC---ccceec-cccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---ERG---LFGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---eRG---lig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|+|+|||.|+++..+...+. ..+.-+|.. +.+..+. ..+ .+-+++ ++......-+..||++.+++.|..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 479999999999999987332 233333433 2222222 122 234444 343332223578999999888875
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
. .-....+|..+.++|||||++++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 124567889999999999999987
No 252
>PRK06922 hypothetical protein; Provisional
Probab=97.31 E-value=0.00011 Score=87.98 Aligned_cols=102 Identities=15% Similarity=0.326 Sum_probs=66.6
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhh----Cc-cceeccccccccC-C-CCccchhhhhc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYER----GL-FGIYHDWCESFST-Y-PRSYDLLHADH 791 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eR----Gl-ig~~h~wce~f~t-y-PrtyDllHa~~ 791 (870)
.-..|||+|||+|.++.+|... +- .+|+-+|.+ .++..+.++ |. +-+++.=+..++. + |.+||+|.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 3457999999999998888753 21 355556655 566665554 21 2223333344442 4 48999998765
Q ss_pred ccccc----c------CCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 792 LFSQL----K------NRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 792 lfS~~----~------~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
++-.+ . ..-.+..+|.++-|+|||||.+||.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 54321 1 112456899999999999999999974
No 253
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.30 E-value=0.00034 Score=76.18 Aligned_cols=133 Identities=16% Similarity=0.188 Sum_probs=83.7
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCCCccchhhhhc-
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYPRSYDLLHADH- 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyPrtyDllHa~~- 791 (870)
..|||+|||.|.+|.+|... +- ..|+-+|.. ..+.++.+ .|+ +-+++ ||++.+. +..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCC
Confidence 35999999999999999864 22 144555543 45544443 244 33443 6776542 13789876641
Q ss_pred ------------ccccccCCc---------ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHH-cCCceE-EEe-ec
Q 002884 792 ------------LFSQLKNRC---------KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLK-SLHWEI-LFA-FS 847 (870)
Q Consensus 792 ------------lfS~~~~rc---------~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~-~l~W~~-~~~-~~ 847 (870)
++.+....+ .+..++-++-++|+|||++++--....-..+..++. ...|.. .+. |-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 111110000 244788899999999999999876666677777776 466753 222 44
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
...++++++++.
T Consensus 272 ~g~~R~~~~~~~ 283 (284)
T TIGR00536 272 NGKERVVLGFYH 283 (284)
T ss_pred CCCceEEEEEec
Confidence 567889888753
No 254
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.30 E-value=0.00025 Score=78.41 Aligned_cols=130 Identities=19% Similarity=0.283 Sum_probs=77.2
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCCCccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
..|||+|||.|.++.+|... +- .+|+.+|.. ..+.++.. .|+ +-+++ |+.+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 46999999999999999765 32 345556653 55544433 355 44444 4544332 368999887521
Q ss_pred ccc------------ccCC---------c-ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCC
Q 002884 793 FSQ------------LKNR---------C-KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQ 850 (870)
Q Consensus 793 fS~------------~~~r---------c-~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~ 850 (870)
+.. +... . ....++-++-++|+|||++++--... ...+..++....+.. ...+...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~-~~~~~~~ 288 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW-LEFENGG 288 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE-EEecCCC
Confidence 100 0000 0 12468899999999999999964333 445777776554322 2234445
Q ss_pred ceEEEEEe
Q 002884 851 EGVLSAQK 858 (870)
Q Consensus 851 e~iL~~~K 858 (870)
.+++++.+
T Consensus 289 ~~~~~~~~ 296 (307)
T PRK11805 289 DGVFLLTR 296 (307)
T ss_pred ceEEEEEH
Confidence 56665554
No 255
>PTZ00146 fibrillarin; Provisional
Probab=97.29 E-value=0.00052 Score=75.47 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=60.8
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhh-CccceeccccccccCC---CCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYER-GLFGIYHDWCESFSTY---PRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eR-Glig~~h~wce~f~ty---PrtyDllHa~~lfS 794 (870)
+|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++..| +++.+..|.+... .| +.++|+|-++-.
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeCC--
Confidence 5999999999999999876 2565544432222355555454 6777777765431 23 257888755331
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
..=....+++++.|+|||||+|+|.
T Consensus 212 ---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 ---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 1112335677999999999999994
No 256
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.26 E-value=0.00026 Score=77.31 Aligned_cols=115 Identities=22% Similarity=0.320 Sum_probs=72.1
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc---cceec-cccccccCCC-Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL---FGIYH-DWCESFSTYP-RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl---ig~~h-~wce~f~tyP-rtyDllHa~~ 791 (870)
..|||+|||+|.++.+|+.. +- ..|+-+|.. ..+.++.+ .|+ +-+++ |+.+. +| .+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEECC
Confidence 46999999999999999865 21 144555554 55554443 365 33444 44443 34 5899987752
Q ss_pred cccc------c----c-----------CCc-ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 792 LFSQ------L----K-----------NRC-KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 792 lfS~------~----~-----------~rc-~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
=+.. . . ... .+..++.++-++|+|||++++--.... ..++.++....|...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 1110 0 0 001 124688899999999999998754433 688888887665443
No 257
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.26 E-value=0.0013 Score=68.80 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=72.0
Q ss_pred eeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc--C--CEEEEeCChhhHHHHHHHHHH
Q 002884 434 IITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE--R--DVLTMSFAPKDEHDAQIQFAL 509 (870)
Q Consensus 434 ~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~--r--~VtgVDiSp~ml~~A~vq~A~ 509 (870)
.+.+.-...+|..+-..-..+|...+ .++.+|||+.||.|.|+..++. . .|+++|++|..+.... +.++
T Consensus 74 ~f~~D~~kvyfs~rl~~Er~Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~-~Ni~ 146 (200)
T PF02475_consen 74 RFKVDLSKVYFSPRLSTERRRIANLV------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLK-ENIR 146 (200)
T ss_dssp EEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHH-HHHH
T ss_pred EEEEccceEEEccccHHHHHHHHhcC------CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHH-HHHH
Confidence 34444455566665544444454443 3588999999999999988887 3 7999999998776655 4444
Q ss_pred HcCCCc-EEEE-cCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 510 ERGIPA-ISAV-MGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 510 ergl~~-~~~v-~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
..++.. +..+ .|...++. ...||-|+++. + .....+|..+.+++|+||++.+
T Consensus 147 lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l---p--~~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 147 LNKVENRIEVINGDAREFLP-EGKFDRVIMNL---P--ESSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp HTT-TTTEEEEES-GGG----TT-EEEEEE-----T--SSGGGGHHHHHHHEEEEEEEEE
T ss_pred HcCCCCeEEEEcCCHHHhcC-ccccCEEEECC---h--HHHHHHHHHHHHHhcCCcEEEC
Confidence 445543 3333 34444433 78899999873 2 2334688889999999998753
No 258
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.25 E-value=0.0016 Score=73.45 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=61.6
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-ccc-CC-------C---C-----C
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKR-LQ-------F---P-----R 529 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~-LP-------f---p-----d 529 (870)
.+|||+|||+|.++..|+.. .|+|+|+++.++..|. +.+...++.++.++.+ ... ++ + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 46999999999999988874 8999999999998887 4455566655555443 222 11 1 0 1
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
..||+|+...-.- .-...++..+ ++|+++++++-
T Consensus 278 ~~~d~v~lDPPR~---G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 278 YNCSTIFVDPPRA---GLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred CCCCEEEECCCCC---CCcHHHHHHH---HcCCcEEEEEc
Confidence 2379988753100 0013444444 34899999983
No 259
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0092 Score=65.88 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=77.8
Q ss_pred ccccccccchhHHhhhcCCC---eEEEEeccCCCC-CChhHHHhhCccc--eec-cccccccCCCCccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSP-DTLPIIYERGLFG--IYH-DWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~-~tl~~i~eRGlig--~~h-~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
+|+|+|||||=.|+.|++.. -++|-=+...+= ....-+.+-|+-+ +++ +.++.-. ..||+|-++==|-..
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE---GKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc---ccccEEEeCCCccCC
Confidence 79999999999999998773 244421111110 1111123344444 444 3555433 499997665555543
Q ss_pred cCCc--ChhhHHHhhhhcccCCcEEEEec--ChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 797 KNRC--KLVPVMAEVDRIVRPGGKLIVRD--EPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 797 ~~rc--~~~~vl~EmDRILRPgG~~iird--~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
+.-- -...++.+--+-|++||-++|=- -..+..+|++++. ++...-.+.+-+||-++|
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEec
Confidence 3210 11257888899999999887653 4555677777766 455555566677877776
No 260
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.22 E-value=0.00021 Score=73.99 Aligned_cols=98 Identities=22% Similarity=0.326 Sum_probs=60.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc---cceeccccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL---FGIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl---ig~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||+|||.|.++..|....-=.-.++-+|.. ..+..+.++ |+ +-+++.=.+.+..=+.+||+|.+.+++-
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 359999999999998886542000133334432 444444333 12 3333322222221137899998865543
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
...++..+|.++.++|+|||.+++.+
T Consensus 133 ---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 133 ---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 33567889999999999999999864
No 261
>PRK14967 putative methyltransferase; Provisional
Probab=97.22 E-value=0.00043 Score=72.51 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=69.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCcc-ceec-cccccccCCC-Cccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLF-GIYH-DWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGli-g~~h-~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-.|||+|||.|.++..|...+. -.|+-+|.. ..+..+.+ .|+- -+++ |+.+. .+ ..||+|.++--|.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---VEFRPFDVVVSNPPYV 112 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---ccCCCeeEEEECCCCC
Confidence 3599999999999998887653 244444443 44443332 3442 2222 45442 34 6899998864332
Q ss_pred ccc------------------CCcChhhHHHhhhhcccCCcEEEEec-ChhhHHHHHHHHHcCCceEEE
Q 002884 795 QLK------------------NRCKLVPVMAEVDRIVRPGGKLIVRD-EPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~------------------~rc~~~~vl~EmDRILRPgG~~iird-~~~~~~~~~~~~~~l~W~~~~ 844 (870)
... ..+.+..++.++-|+|+|||.+++-. ....+..+...+++-.|.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 110 01224567888999999999999842 222344555556666665544
No 262
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.22 E-value=0.00055 Score=78.60 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=84.6
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc-cceec-cccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL-FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl-ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
+|||+|||.|.++.+|... +- .+|+-+|.. ..+..+.+ .|+ +-+++ ||.+...+-...||+|-++-=+-.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 6999999999999888753 32 244455543 55554443 243 33444 565542111247999876442210
Q ss_pred c---------------------cCCc-ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe--ecCCCc
Q 002884 796 L---------------------KNRC-KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA--FSKDQE 851 (870)
Q Consensus 796 ~---------------------~~rc-~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~--~~~~~e 851 (870)
. .+.. -+..++-+.-+.|+|||++++--..+-...++.++....|..... |-.+.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d 411 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD 411 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence 0 0000 123677778899999999998766666788999998888865332 556789
Q ss_pred eEEEEEe
Q 002884 852 GVLSAQK 858 (870)
Q Consensus 852 ~iL~~~K 858 (870)
+++++++
T Consensus 412 R~v~~~~ 418 (423)
T PRK14966 412 RVTLGKY 418 (423)
T ss_pred EEEEEEE
Confidence 9999875
No 263
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.21 E-value=0.0003 Score=80.07 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-C----ChhHHHhhCccc--eec-cccccccCCC-Cccchhhhhcc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-D----TLPIIYERGLFG--IYH-DWCESFSTYP-RSYDLLHADHL 792 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~----tl~~i~eRGlig--~~h-~wce~f~tyP-rtyDllHa~~l 792 (870)
..+||+|||.|.|..+|+.. |= .|++-++-. . .+.-+..+||-. +++ |.-+-+..+| .++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln-- 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH-- 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--
Confidence 35999999999999999866 21 155555543 2 234455667633 233 3222123455 799999873
Q ss_pred ccc-c-cCC---cChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcC-CceE
Q 002884 793 FSQ-L-KNR---CKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 793 fS~-~-~~r---c~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l-~W~~ 842 (870)
|.. | +.| =-....|-|+-|+|+|||.+.|+ |...+...+...+... +++.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 432 1 221 12257999999999999998886 6666666665555544 5544
No 264
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.19 E-value=0.0018 Score=72.28 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccCCCCCCceeEEEecccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~LPfpd~SFDlV~Ss~~alh 543 (870)
...++|+|.|.|..+..+... +|-++++....+..+....+ .| +..+.++ ..+|- + |+|++-.++.|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g---V~~v~gdmfq~~P~--~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG---VEHVAGDMFQDTPK--G--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC---cceecccccccCCC--c--CeEEEEeeccc
Confidence 478999999999999888775 78999988776655443332 33 2333332 34543 2 59999888888
Q ss_pred cccC-hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 544 WHID-GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 544 w~~D-~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|.++ ...+|+.++..|+|||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 8754 48999999999999999998854
No 265
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.15 E-value=0.0013 Score=66.79 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC-----CCCCCceeEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL-----QFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L-----Pfpd~SFDlV 535 (870)
..+.-||++|.|||.++..++.+ .+++++.++.....-. +.-....++..++..+ .+.+.-||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~-----~~~p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN-----QLYPGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH-----HhCCCccccccchhhHHHHHhhcCCCeeeeE
Confidence 35679999999999999999876 7899999997554332 1211122223333222 2567789999
Q ss_pred EecccccccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+|..-++.+.... -.+|..+...|++||.|+--
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 9964334333333 57889999999999999854
No 266
>PRK06202 hypothetical protein; Provisional
Probab=97.14 E-value=0.00023 Score=74.81 Aligned_cols=99 Identities=12% Similarity=0.251 Sum_probs=67.0
Q ss_pred cccccccccccchhHHhhhcC----CCeEEEEeccCCCC-CChhHHHhhCc---cceeccccccccCCCCccchhhhhcc
Q 002884 721 NVRNVMDMRAVYGGFAAALKD----LQVWVMNVVNVNSP-DTLPIIYERGL---FGIYHDWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~----~~vwvmNvvp~~~~-~tl~~i~eRGl---ig~~h~wce~f~tyPrtyDllHa~~l 792 (870)
.-..|||+|||+|.++.+|.+ .+. -.+|+-+|.. ..+..+.++.. +.+...-++.++.-+.+||+|-+.++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 345799999999999888864 221 2367778865 78877776631 11222233444444589999999888
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|.+..+. .+..+|-||-|+|| |.++|.|
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 8765432 24569999999999 5566665
No 267
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.12 E-value=0.00019 Score=78.63 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=63.7
Q ss_pred cccccccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhH----HHhhCccceecccccccc--CCCCccchhhhhc
Q 002884 719 WSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPI----IYERGLFGIYHDWCESFS--TYPRSYDLLHADH 791 (870)
Q Consensus 719 W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~----i~eRGlig~~h~wce~f~--tyPrtyDllHa~~ 791 (870)
.+..+.|||+|||.|.++.++.+. |- .+++-+|.+..+.. +.+.|+-.-++-.+..|. ++|. +|++-..+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCR 223 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEh
Confidence 355678999999999999988766 21 12333344444444 344576543433333332 3554 78865545
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
++-.+.. -....+|-++-|.|||||.++|-|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4433322 1234689999999999999999863
No 268
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.12 E-value=0.0002 Score=74.85 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=52.6
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHh----hCc--cceeccccccccCCC--Cccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYE----RGL--FGIYHDWCESFSTYP--RSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~e----RGl--ig~~h~wce~f~tyP--rtyDllHa 789 (870)
..|||+|||+|.+++.|... .|+.+-+.| ..+.++.+ -|+ +-+.+ +..+..++ ..||+|++
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDRIYV 151 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCEEEE
Confidence 46999999999999887654 344444333 33333322 244 22222 22333343 68999988
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.+.+ ..+..++-+.|||||.+|+-
T Consensus 152 ~~~~---------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 152 TAAG---------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCc---------ccchHHHHHhhCCCcEEEEE
Confidence 5433 34555677899999999985
No 269
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.00026 Score=77.40 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=74.0
Q ss_pred cccccccccccccccccchhHHhhhcCC-CeEEEEeccCCCC--CChhHHHhhCccceeccccccccCCCCccchhhhhc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP--DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~--~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+++.-+.. |||+|||-|+++.++++. +|-|+-|.-..+. .--..|.++||-.-++..=.....++..||-|-+.|
T Consensus 68 l~L~~G~~--lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvg 145 (283)
T COG2230 68 LGLKPGMT--LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVG 145 (283)
T ss_pred cCCCCCCE--EEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehh
Confidence 34444544 999999999999999877 7844433322221 333457889998433332222266665699999999
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+|-+... -...+.+-=+.++|+|||.+++-
T Consensus 146 mfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 146 MFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 9987654 46778999999999999999876
No 270
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.09 E-value=6.7e-05 Score=68.53 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=61.8
Q ss_pred cccccccchhHHhhhcCCC--eEEEEeccCCCC-CChhHHHhhC----c-cceeccccccccCCCCccchhhhhcc-ccc
Q 002884 725 VMDMRAVYGGFAAALKDLQ--VWVMNVVNVNSP-DTLPIIYERG----L-FGIYHDWCESFSTYPRSYDLLHADHL-FSQ 795 (870)
Q Consensus 725 vmDm~ag~GgfaaaL~~~~--vwvmNvvp~~~~-~tl~~i~eRG----l-ig~~h~wce~f~tyPrtyDllHa~~l-fS~ 795 (870)
|||+|||.|.+..+|.+.- ---..+.-+|.. ..|..+.++. + +-+++.=++.++..-.+||+|=+.++ |.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998651 001356667755 7888888777 2 23344333444433479999999766 555
Q ss_pred ccCCcChhhHHHhhhhcccCCc
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGG 817 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG 817 (870)
-..=.+..+|-++-|+|||||
T Consensus 81 -~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 -LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -SSHHHHHHHHHHHHHTEEEEE
T ss_pred -CCHHHHHHHHHHHHHHhCCCC
Confidence 344567789999999999998
No 271
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.09 E-value=0.002 Score=68.00 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC
Q 002884 449 LHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF 527 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf 527 (870)
...++.|.............-++|||||=.......-... +|+.||+.+.. . -+..+|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~-----------~----~I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH-----------P----GILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCC-----------C----CceeeccccCCC
Confidence 3445555554432221223369999998755433222222 79999998741 1 224455444454
Q ss_pred ---CCCceeEEEecccccccccCh---HHHHHHHHhhcCCCcE-----EEEE
Q 002884 528 ---PRNVFDLVHCARCRVPWHIDG---GKLLLELNRVLRPGGY-----FVWS 568 (870)
Q Consensus 528 ---pd~SFDlV~Ss~~alhw~~D~---~~vL~Ei~RVLKPGG~-----Lv~S 568 (870)
+++.||+|+|+. ++.|.+++ ...+..+++.|+|+|. |++.
T Consensus 98 p~~~~e~FdvIs~SL-VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 98 PKNESEKFDVISLSL-VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred CCCcccceeEEEEEE-EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 367999999985 58888876 7899999999999999 7776
No 272
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.09 E-value=0.00021 Score=66.27 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=56.1
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCccc--eec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLFG--IYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGlig--~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++.+|... +- ..|+.+|.. ..+..+ ...|+-. ++. +.-..+...+.+||.|-+.+.+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 46999999999999999765 22 244555543 333332 2234322 221 2111112224689987654322
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
. .+..++-++-|+|+|||+||+.
T Consensus 99 ~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 2457999999999999999985
No 273
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0034 Score=72.74 Aligned_cols=97 Identities=25% Similarity=0.373 Sum_probs=71.8
Q ss_pred EEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcE-EEEcCcccCCCCCCceeEEEecccccccc
Q 002884 470 VSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAI-SAVMGTKRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~-~~v~dae~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
++|-+|||.-.+...|.+. .|+.+|+|+..+.......+. ..+.. ....+...+.|++++||+|+--..+-+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 9999999999988888764 899999999877766655442 22333 34456788999999999999753321211
Q ss_pred cC---------hHHHHHHHHhhcCCCcEEEEE
Q 002884 546 ID---------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 546 ~D---------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+ ....+.++.|+|+|||.++..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 22 235689999999999998866
No 274
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.07 E-value=0.0078 Score=67.21 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCchhHHHHhc--------CCEEEEeCChhhHHHHHHHHHHHcCCCcEE--EEcCc-----ccCCC--CC
Q 002884 467 YTRVSLDVGCGVASFGGYLFE--------RDVLTMSFAPKDEHDAQIQFALERGIPAIS--AVMGT-----KRLQF--PR 529 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~--------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~--~v~da-----e~LPf--pd 529 (870)
++..|+|+|||.|.=++.|++ ..++++|+|..++..+..+... ...|.+. .++++ ..+|- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-GNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-ccCCCeEEEEEEecHHHHHhhccccccc
Confidence 456899999999975544433 1589999999999888765542 2233222 23332 12322 22
Q ss_pred CceeEEEecccccccccCh--HHHHHHHHh-hcCCCcEEEEEECCCcCchhHHHHHHHh
Q 002884 530 NVFDLVHCARCRVPWHIDG--GKLLLELNR-VLRPGGYFVWSATPVYQKLGEDVEIWNA 585 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~--~~vL~Ei~R-VLKPGG~Lv~S~~p~~~tL~El~~~w~~ 585 (870)
....+|+.-.+.+...... ..+|+.+.+ +|+|||.|++. ......-..+..++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG-~D~~k~~~~l~~AY~d 212 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG-LDGCKDPDKVLRAYND 212 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe-cCCCCCHHHHHHHhcC
Confidence 3467777644445543333 578999999 99999999997 3333333333344443
No 275
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.07 E-value=0.00024 Score=73.69 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=54.3
Q ss_pred cccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhCcc---ceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERGLF---GIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRGli---g~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||+|.+++.|.+. .|+.+-+.|.-.......+...|+. -+++ |..+.+. -..+||+|++.+.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEccCc
Confidence 35999999999999887643 2443333322111111223344653 3444 3333322 23689999986543
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. .+.-++-|+|+|||.+|+-.
T Consensus 153 ~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 S---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred c---------hhhHHHHHhcCcCcEEEEEE
Confidence 2 23457889999999999853
No 276
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.07 E-value=0.0026 Score=64.23 Aligned_cols=90 Identities=29% Similarity=0.395 Sum_probs=53.7
Q ss_pred CCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC----------c-ccCCCCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG----------T-KRLQFPRN 530 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d----------a-e~LPfpd~ 530 (870)
...+||||||++|.|+..+..+ .|+|+|+.+... ++....+.+ . ..++-...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~------------~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP------------LQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------------TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc------------ccceeeeecccchhhHHHhhhhhcccccc
Confidence 4589999999999999999875 699999988511 111111111 0 11111236
Q ss_pred ceeEEEecccccccc----cCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 531 VFDLVHCARCRVPWH----IDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 531 SFDlV~Ss~~alhw~----~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.||+|+|-. +.... .+. ...|.-+...|+|||.|++-.
T Consensus 91 ~~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 91 KFDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred Ccceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 899999953 12221 111 234555567899999999873
No 277
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.06 E-value=0.00051 Score=69.17 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=65.1
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH---Hh-hCc--cceec-cccccccCCCCccchhhhhcc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII---YE-RGL--FGIYH-DWCESFSTYPRSYDLLHADHL 792 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i---~e-RGl--ig~~h-~wce~f~tyPrtyDllHa~~l 792 (870)
-.+|||+|||+|-.|.+|+.. +-+- |+-+|.. ..+..+ .+ -|+ +-+++ |+.+.+. +..||+|=++-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 456999999999999999876 2222 3333332 333332 22 333 22333 5655544 589999877644
Q ss_pred cccccC--CcChhhHHHhhhhcccCCcEEE--EecChhhHHHHHHHHH
Q 002884 793 FSQLKN--RCKLVPVMAEVDRIVRPGGKLI--VRDEPSAVTEVENFLK 836 (870)
Q Consensus 793 fS~~~~--rc~~~~vl~EmDRILRPgG~~i--ird~~~~~~~~~~~~~ 836 (870)
|..... ...+..++.+.-|+|+|||.++ +.........++.++.
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 332221 1345688999999999999874 4444444444555444
No 278
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.02 E-value=0.00031 Score=71.87 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=58.7
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCCc
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~rc 800 (870)
+|||+|||.|.++.+|.+. ++ ++.-+|.. ..+..+..+|+--+..+..+.+..++ ++||+|-+.+.|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 5999999999999999754 32 22334433 56666667775433345544444565 7999999988886654
Q ss_pred ChhhHHHhhhhcccC
Q 002884 801 KLVPVMAEVDRIVRP 815 (870)
Q Consensus 801 ~~~~vl~EmDRILRP 815 (870)
+...+|.||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 366688888777664
No 279
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.02 E-value=0.00025 Score=73.88 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=52.8
Q ss_pred cccccccccchhHHhhhcCC--C---eEEEEeccCCCCCChhH----HHhhCc--cceec-cccccccCCCCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL--Q---VWVMNVVNVNSPDTLPI----IYERGL--FGIYH-DWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~---vwvmNvvp~~~~~tl~~----i~eRGl--ig~~h-~wce~f~tyPrtyDllHa~ 790 (870)
..|||+|||+|.+++.|.+. . |+.+-+.| ..+.. +.+.|+ +-+++ |..+.+.. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 35999999999999998765 1 43333222 33333 333454 22333 33332211 2689999874
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+. ...+.-++-|.|+|||.+|+-
T Consensus 154 ~~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AA---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CC---------cccccHHHHHhcCcCcEEEEE
Confidence 32 234556778899999999984
No 280
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0065 Score=70.45 Aligned_cols=120 Identities=21% Similarity=0.217 Sum_probs=80.6
Q ss_pred cccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 443 QFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 443 ~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
.|..........|...+.......+..+|||+=||.|.|+..|+++ +|+|+++++.++..|+ +.|+..++.+..++.
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~ 347 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIA 347 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEe
Confidence 4554444444444444444333445789999999999999999975 9999999999998887 567777887766665
Q ss_pred C-cccCCC---CCCceeEEEecccccccccChH-HHHHHHHhhcCCCcEEEEE
Q 002884 521 G-TKRLQF---PRNVFDLVHCARCRVPWHIDGG-KLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 521 d-ae~LPf---pd~SFDlV~Ss~~alhw~~D~~-~vL~Ei~RVLKPGG~Lv~S 568 (870)
+ ++.+.. ....||.|+...- -.-.. .+++.+ ..++|-.++++|
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCC----CCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 5 343332 2357899987420 01113 444444 456888899998
No 281
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.96 E-value=0.0021 Score=71.13 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcC-cccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIP-AISAVMG-TKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~d-ae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.|||+|||+|.++...+. ++|.+++.|. |...|+.-.+.. .+. .+..+.+ .+.+.+| +..|+|++-...
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASN-NLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcC-CccceEEEccCccccccCc-hhccEEEeccch
Confidence 578999999999976544443 3899999876 666666433332 333 3344444 4666665 459999985422
Q ss_pred cccccCh-HHHHHHHHhhcCCCcEEEEE
Q 002884 542 VPWHIDG-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 542 lhw~~D~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
....+.. -.....++|.|+|.|.++-+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2211211 22333456999999998843
No 282
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0073 Score=63.46 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=60.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccC--------CCCCCc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRL--------QFPRNV 531 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~L--------Pfpd~S 531 (870)
.++.+|+||||..|+++..+++. .|+|+|+-|.... +.+.++. +...- -+....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------------~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------------PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------------CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46889999999999999988875 4999999886321 2223332 21111 133445
Q ss_pred eeEEEecc---cccccccCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 532 FDLVHCAR---CRVPWHIDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 532 FDlV~Ss~---~alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+|+|-. ..-+|..|. ..++.-+..+|+|||.|++..
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 79999732 112333332 345666778999999999873
No 283
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.95 E-value=0.00068 Score=72.87 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=77.4
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCccceec-cccccccC-CCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGLFGIYH-DWCESFST-YPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGlig~~h-~wce~f~t-yPrtyDllHa~~lfS 794 (870)
..|||+|||+|.++.+|... +- ..|+-+|.. ..+..+.+ -|+ -+++ |+.+.+.. +...||+|=++=-|.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888653 21 133444443 44433322 232 3333 56554321 235699976653322
Q ss_pred c-------------ccCCcC----------hhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCC
Q 002884 795 Q-------------LKNRCK----------LVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKD 849 (870)
Q Consensus 795 ~-------------~~~rc~----------~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~ 849 (870)
. +..++. +..++..+.++|+|||++++--..+-...+..+++...|+..+..+++
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1 001111 347888889999999999987666667788888888888887765554
No 284
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.95 E-value=0.0024 Score=69.94 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=63.3
Q ss_pred cCCCCCEEEEECCCCchhHHHHhc-----------CCEEEEeCChhhHHHHHHHHHHHcCCCc---EEEEcCcccCC-CC
Q 002884 464 WGKYTRVSLDVGCGVASFGGYLFE-----------RDVLTMSFAPKDEHDAQIQFALERGIPA---ISAVMGTKRLQ-FP 528 (870)
Q Consensus 464 ~g~~~~~VLDIGCGtG~~a~~La~-----------r~VtgVDiSp~ml~~A~vq~A~ergl~~---~~~v~dae~LP-fp 528 (870)
...++.+|||..||+|.|...+.. ..++|+|+++.....|...... +++.. .....+.-..+ +.
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEEEES-TTTSHSCT
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccccccccccccccc
Confidence 344567899999999998766543 2899999999988777765543 33322 13333332222 22
Q ss_pred -CCceeEEEecccccc--ccc-----------------C-hHHHHHHHHhhcCCCcEEEEEEC
Q 002884 529 -RNVFDLVHCARCRVP--WHI-----------------D-GGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 529 -d~SFDlV~Ss~~alh--w~~-----------------D-~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
...||+|+++.-... |.. . ...++..+.+.|++||.+++..+
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 578999999732111 110 0 02577889999999999877643
No 285
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.92 E-value=0.0051 Score=63.35 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCc-ccCC---CCCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGT-KRLQ---FPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~da-e~LP---fpd~SFDlV~S 537 (870)
.+.+|||+-||+|.++...+.+ .|+.||.++..+...+ +.+..-+... .....+. ..++ .....||+|+.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999877765 8999999998766554 3344444433 3344443 2222 24688999998
Q ss_pred cccccccccCh--HHHHHHHH--hhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG--GKLLLELN--RVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~--~~vL~Ei~--RVLKPGG~Lv~S 568 (870)
-. +|.... ..+|..+. ..|+++|++++.
T Consensus 121 DP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 121 DP---PYAKGLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp -----STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred CC---CcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 64 454443 56777776 799999999997
No 286
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.91 E-value=0.00051 Score=71.60 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=66.7
Q ss_pred ccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCc-cceec-cccccccCCC-Cccchhhhhcccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGL-FGIYH-DWCESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGl-ig~~h-~wce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
...|||+|||+|-+..+|... +- ..++-+|.. ..+..+.++.- +.+++ +..+ ++| ++||+|-+.++|.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~---~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFD---PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccC---CCCCCCEEEEEECChhhhC
Confidence 356999999999999999875 32 256666654 67777766421 23333 3333 554 899999999999876
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. .-.+..+|-||.|++ +|++||.+
T Consensus 119 ~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 N-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred C-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 4 235678999999998 57888864
No 287
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.91 E-value=0.0007 Score=70.22 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=63.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----CccceeccccccccCCCCccchhhhhcccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GLFGIYHDWCESFSTYPRSYDLLHADHLFSQL 796 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Glig~~h~wce~f~tyPrtyDllHa~~lfS~~ 796 (870)
-.+|||+|||.|.|+.+|.+.+. .|.-+|.. +.+..+.++ |+..-++-....+...+.+||+|.+.++|.++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 35799999999999999987764 25555544 555555543 33112222222244445889999998887554
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
.. -.+..++-++-|++++++.+.+..
T Consensus 141 ~~-~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 141 PQ-EDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CH-HHHHHHHHHHHhhcCCeEEEEECC
Confidence 32 346678889999887666655543
No 288
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.013 Score=60.44 Aligned_cols=114 Identities=19% Similarity=0.348 Sum_probs=71.4
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQ 526 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LP 526 (870)
+|.|......+. +.....+|+||||+|..+..|+.. -..++|++|..+.... .-|+..+........+. .-.
T Consensus 29 lDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl-~TA~~n~~~~~~V~tdl-~~~ 105 (209)
T KOG3191|consen 29 LDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL-ETARCNRVHIDVVRTDL-LSG 105 (209)
T ss_pred HHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH-HHHHhcCCccceeehhH-Hhh
Confidence 444544443322 233678999999999998888875 4788999998654433 55555554433333332 111
Q ss_pred CCCCceeEEEecccccc--------------cc--cCh----HHHHHHHHhhcCCCcEEEEE
Q 002884 527 FPRNVFDLVHCARCRVP--------------WH--IDG----GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 527 fpd~SFDlV~Ss~~alh--------------w~--~D~----~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+..++.|+++.+.-.++ |. .+. ..+|..+..+|.|.|+|++.
T Consensus 106 l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 106 LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 22388999888743222 21 111 25667777888999999987
No 289
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.89 E-value=0.00053 Score=71.12 Aligned_cols=90 Identities=28% Similarity=0.375 Sum_probs=69.1
Q ss_pred ccccccccchhHHhhhcC-CCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccCCc
Q 002884 724 NVMDMRAVYGGFAAALKD-LQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~-~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~rc 800 (870)
.|||+|||.|.+-++|.+ ++|-+ .-++.. ..+.....|||.-+-+|+-+.+..|| .+||.|=.+..+-...
T Consensus 16 rVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~--- 89 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR--- 89 (193)
T ss_pred EEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh---
Confidence 499999999999999987 46633 333433 56778899999977779999999998 9999976544444333
Q ss_pred ChhhHHHhhhhcccCCcEEEEe
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iir 822 (870)
....||.||=|| |...|++
T Consensus 90 ~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEE
Confidence 366899999666 7788888
No 290
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.89 E-value=0.0088 Score=65.26 Aligned_cols=96 Identities=20% Similarity=0.078 Sum_probs=56.8
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEE--EEcC--cccCCCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAIS--AVMG--TKRLQFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~--~v~d--ae~LPfpd~SFDlV~ 536 (870)
-...+|||+|||+|...-.+.+ ..++++|.|+.|+..++. .... ...... .... ...+++.. .|+|+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~-~~~~~~~~~~~~~~~~~~~~~~--~DLvi 107 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRA-GPNNRNAEWRRVLYRDFLPFPP--DDLVI 107 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhc-ccccccchhhhhhhcccccCCC--CcEEE
Confidence 3567999999999965443332 289999999999877653 3322 211111 1111 12233433 39999
Q ss_pred ecccccccccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+++++.. ..+ ...++..+.+.+.+ +|++.
T Consensus 108 ~s~~L~E-L~~~~r~~lv~~LW~~~~~--~LVlV 138 (274)
T PF09243_consen 108 ASYVLNE-LPSAARAELVRSLWNKTAP--VLVLV 138 (274)
T ss_pred Eehhhhc-CCchHHHHHHHHHHHhccC--cEEEE
Confidence 9876433 333 24566666666655 77776
No 291
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.88 E-value=0.00086 Score=68.75 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=60.9
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||+|.++..|+.. +- -.|+-+|.. ..+..+.+ .|+ +-+++ |..+.+...+..+|.++.++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 45999999999998887642 11 123334432 34433332 354 22332 22222211122345544321
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLH 839 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~ 839 (870)
...+..+|-++.|+|+|||+|++-... +.+..+...++.+.
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 235678999999999999999988643 33455666666553
No 292
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.88 E-value=0.011 Score=58.07 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhc-----C---CEEEEeCChhhHHHHHHHHHHHcC--C-CcEEEE
Q 002884 451 YIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFE-----R---DVLTMSFAPKDEHDAQIQFALERG--I-PAISAV 519 (870)
Q Consensus 451 Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~-----r---~VtgVDiSp~ml~~A~vq~A~erg--l-~~~~~v 519 (870)
+..+|...+.......+...|+|+|||.|.++..|+. . .|+++|..+..+..+.. .+...+ . ....+.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~~ 87 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK-RAQKLGSDLEKRLSFI 87 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH-HHHHhcchhhccchhh
Confidence 3344444433322235678999999999999988877 3 89999999987766653 444333 1 111111
Q ss_pred cCc-ccCCCCCCceeEEEecccccccccCh-HHHHHHHHhhcCCCcEEEEEECCCcCc
Q 002884 520 MGT-KRLQFPRNVFDLVHCARCRVPWHIDG-GKLLLELNRVLRPGGYFVWSATPVYQK 575 (870)
Q Consensus 520 ~da-e~LPfpd~SFDlV~Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~~p~~~t 575 (870)
.+. ...+ .....++++. +|-+.++ ..+|+-+.+ |+-.+++..+--|..
T Consensus 88 ~~~~~~~~-~~~~~~~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh~ 137 (141)
T PF13679_consen 88 QGDIADES-SSDPPDILVG----LHACGDLSDRALRLFIR---PNARFLVLVPCCYHK 137 (141)
T ss_pred ccchhhhc-ccCCCeEEEE----eecccchHHHHHHHHHH---cCCCEEEEcCCccch
Confidence 111 1111 1444566654 6777777 445554444 666666543544443
No 293
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.88 E-value=0.00058 Score=72.84 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=82.6
Q ss_pred HHHHhhcccccceeeeccccccccccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceecccc--
Q 002884 698 RDYKHWRYVVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWC-- 774 (870)
Q Consensus 698 ~dye~W~~~V~~TY~~~Lgi~W~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wc-- 774 (870)
++|..-|-.+|..+...+.--....|.+.|+|||.| +|+..+.--. =+|+.+|-. .+|. +...+..-.||.--
T Consensus 10 ~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~G-qa~~~iae~~--k~VIatD~s~~mL~-~a~k~~~~~y~~t~~~ 85 (261)
T KOG3010|consen 10 ADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNG-QAARGIAEHY--KEVIATDVSEAMLK-VAKKHPPVTYCHTPST 85 (261)
T ss_pred HHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCC-cchHHHHHhh--hhheeecCCHHHHH-HhhcCCCcccccCCcc
Confidence 455544445554322222212234568999999999 6665543322 477888866 7787 44555555666433
Q ss_pred ------ccccCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcE----EEEecChhhHHHHHHHHHcCCce
Q 002884 775 ------ESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGK----LIVRDEPSAVTEVENFLKSLHWE 841 (870)
Q Consensus 775 ------e~f~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~----~iird~~~~~~~~~~~~~~l~W~ 841 (870)
+.|.-=+.+-|||-|.--| +=|+++..+-++.|||||.|- +..+|..-+.-++-.+..+++|+
T Consensus 86 ms~~~~v~L~g~e~SVDlI~~Aqa~----HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 86 MSSDEMVDLLGGEESVDLITAAQAV----HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred ccccccccccCCCcceeeehhhhhH----HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 3333337999996551111 227899999999999999992 22344444455666667777775
No 294
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.86 E-value=0.00092 Score=69.54 Aligned_cols=96 Identities=8% Similarity=0.131 Sum_probs=66.5
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c---cceeccccccccCCCCccchhhhhccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L---FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l---ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
-..|||+|||.|.++.+|++.+. .|+-+|.. ..+..+.+|. + +...+ ..+...|.+||+|=+..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV---NDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CChhhCCCCcCEEEEhhHH
Confidence 45799999999999999988754 45556654 6777766653 1 22222 2223334889998776666
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.++. ...+..++.++.|+++|++++.+...
T Consensus 130 ~~~~-~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 130 IHYP-ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HhCC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5442 24567789999999999988887644
No 295
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0053 Score=64.53 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCCCEEEEECCCCchhHHHHhc----C--CEEEEeCChhhHHHHHHHHHHHc---------CCCcEEEEcCcccCC-CCC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE----R--DVLTMSFAPKDEHDAQIQFALER---------GIPAISAVMGTKRLQ-FPR 529 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~----r--~VtgVDiSp~ml~~A~vq~A~er---------gl~~~~~v~dae~LP-fpd 529 (870)
.++.++||+|.|+|.++..++. . .++|||.-+..+..+....-..- ......++.++.+.- -+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 3688999999999987765552 2 44999998887766553322211 011233444443333 346
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..||.|||.. ....+..++...|+|||.+++-
T Consensus 161 a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 7899999962 3346677888899999999985
No 296
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.83 E-value=0.0062 Score=69.40 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=68.6
Q ss_pred CEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEE-cCccc-CCCCCCceeEEEecccc
Q 002884 469 RVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAV-MGTKR-LQFPRNVFDLVHCARCR 541 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v-~dae~-LPfpd~SFDlV~Ss~~a 541 (870)
-+|||+.||+|.++..++.+ .|+++|+++..+..++. .+...++...... .++.. +......||+|+.-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~-N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKN-NVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 48999999999999887753 69999999998776664 3444455433333 33322 222235799998753
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+ ..+..++..+.+.+++||+|+++.+.
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEEecc
Confidence 2 23468999999999999999999543
No 297
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.80 E-value=0.0045 Score=67.14 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCchhHHHHh-cC--CEEEEeCChhhHHHHHHHH---------------HHHcCC------------Cc
Q 002884 466 KYTRVSLDVGCGVASFGGYLF-ER--DVLTMSFAPKDEHDAQIQF---------------ALERGI------------PA 515 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La-~r--~VtgVDiSp~ml~~A~vq~---------------A~ergl------------~~ 515 (870)
.++.++||||||.-..-..-+ +. +|+..|+++......+.-. +...|- ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357799999999854322112 22 7999999887654322110 010110 01
Q ss_pred E--EEEcCc-ccCCCCC-----CceeEEEecccccccccCh---HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHH
Q 002884 516 I--SAVMGT-KRLQFPR-----NVFDLVHCARCRVPWHIDG---GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWN 584 (870)
Q Consensus 516 ~--~~v~da-e~LPfpd-----~SFDlV~Ss~~alhw~~D~---~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~ 584 (870)
+ +..++. ..-|+.. ..||+|++.+|+---+.+. ..+++.+.++|||||.|++.+.... +.... .
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~-t~Y~v----G 209 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS-TYYMV----G 209 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS--SEEEE----T
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc-eeEEE----C
Confidence 1 223343 3333433 3599999988743334454 6889999999999999999853211 10000 0
Q ss_pred hhcccccccchhHHHHHHHHHhhccceEEE
Q 002884 585 AMSNLTVSMCWELVTIKMDKLNSAGFAIYR 614 (870)
Q Consensus 585 ~~~~la~~mcW~~va~~~~~L~daGfaI~r 614 (870)
. ..+.. ++-. .....+.|..+|+.|..
T Consensus 210 ~-~~F~~-l~l~-ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 210 G-HKFPC-LPLN-EEFVREALEEAGFDIED 236 (256)
T ss_dssp T-EEEE----B--HHHHHHHHHHTTEEEEE
T ss_pred C-Eeccc-ccCC-HHHHHHHHHHcCCEEEe
Confidence 0 00000 1111 12346788899998877
No 298
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.77 E-value=0.007 Score=69.30 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHHhc--C-CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcC-c-ccCC---CCCCceeEEE
Q 002884 467 YTRVSLDVGCGVASFGGYLFE--R-DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMG-T-KRLQ---FPRNVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~--r-~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~d-a-e~LP---fpd~SFDlV~ 536 (870)
.+++|||+=|=||.|+.+.+. + .|++||+|...+..|+.++.. .|++ .+.++.+ . .-|. -....||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 378999999999998877665 3 999999999999998855444 4543 2334443 2 2222 2345899999
Q ss_pred ecccccc------cc--cChHHHHHHHHhhcCCCcEEEEEECCCcCchhH
Q 002884 537 CARCRVP------WH--IDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE 578 (870)
Q Consensus 537 Ss~~alh------w~--~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E 578 (870)
.-.-++- |. .+...++..+.++|+|||.+++++....-....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH
Confidence 8422111 11 233678899999999999999985444333333
No 299
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0026 Score=70.29 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=76.6
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCccceeccccccccCCC--Cccchhhhhccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGLFGIYHDWCESFSTYP--RSYDLLHADHLF 793 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGlig~~h~wce~f~tyP--rtyDllHa~~lf 793 (870)
.-+||||+|||.|-+|-|.++.+. --|+-+|.. -.+.+..| -|+--+.|.=+-.....| +.||+|-|+= +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 358999999999999999988875 224444432 23333222 233323343333334555 5999988721 1
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEecChhh-HHHHHHHHHcCCceEEEeecCCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA-VTEVENFLKSLHWEILFAFSKDQEGVLS 855 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~-~~~~~~~~~~l~W~~~~~~~~~~e~iL~ 855 (870)
.. -+..+.-++-|.|||||++|++.=... .+.+...+.+-.|.+..+... .|.+.+
T Consensus 239 A~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-~eW~~i 295 (300)
T COG2264 239 AE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-EEWVAI 295 (300)
T ss_pred HH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-CCEEEE
Confidence 10 122455577899999999999963322 466667777778888654333 344443
No 300
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.74 E-value=0.011 Score=62.96 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCchhHHHH----hcC-CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcC-c-ccCC-----CCCCcee
Q 002884 467 YTRVSLDVGCGVASFGGYL----FER-DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMG-T-KRLQ-----FPRNVFD 533 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~L----a~r-~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~d-a-e~LP-----fpd~SFD 533 (870)
..+++||||.=||.-+..+ .+. +|+++|+.+.....+. ++.+..|..- +.++.+ + +.|+ ...++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 4679999998888543333 333 9999999998766663 4555555542 233333 1 2221 3578999
Q ss_pred EEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 534 LVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 534 lV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+||.- +|-......+.++.++||+||++++-
T Consensus 152 faFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 99874 46555578999999999999999986
No 301
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.72 E-value=0.0019 Score=65.31 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred ccccccccccccchhHHhhhcCCC-----eEEEEeccCCCCCChhHHHhhCccc---eeccccccccCCCCccchhhhhc
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDLQ-----VWVMNVVNVNSPDTLPIIYERGLFG---IYHDWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~~-----vwvmNvvp~~~~~tl~~i~eRGlig---~~h~wce~f~tyPrtyDllHa~~ 791 (870)
+.-.+|||+||+.|||..+|.++. |+-+-+.|.........+ +|=+- ......+.+..-.+.||||.||+
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecccc
Confidence 346889999999999999999887 333444444222111111 22110 00111222221125899999999
Q ss_pred ccccccCC---c--Chh---hHHHhhhhcccCCcEEEEe-----cChhhHHHHHHHHHcCCceEEEe-ecCCCceEEEEE
Q 002884 792 LFSQLKNR---C--KLV---PVMAEVDRIVRPGGKLIVR-----DEPSAVTEVENFLKSLHWEILFA-FSKDQEGVLSAQ 857 (870)
Q Consensus 792 lfS~~~~r---c--~~~---~vl~EmDRILRPgG~~iir-----d~~~~~~~~~~~~~~l~W~~~~~-~~~~~e~iL~~~ 857 (870)
-+.....+ . .+. ..|.=+-+.|||||.+|+- +...++..++.....+++---.. ..+..|..|||+
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~ 179 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYLVCR 179 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEEESE
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEEEEc
Confidence 66543221 0 111 2222334669999988875 22355666666666544432111 234578899886
Q ss_pred e
Q 002884 858 K 858 (870)
Q Consensus 858 K 858 (870)
+
T Consensus 180 ~ 180 (181)
T PF01728_consen 180 G 180 (181)
T ss_dssp E
T ss_pred C
Confidence 4
No 302
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.014 Score=66.15 Aligned_cols=109 Identities=21% Similarity=0.289 Sum_probs=71.4
Q ss_pred hhcCCCCCEEEEECCCCchhHHHHhcC------CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCcccCC--CC-CCc
Q 002884 462 IAWGKYTRVSLDVGCGVASFGGYLFER------DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGTKRLQ--FP-RNV 531 (870)
Q Consensus 462 i~~g~~~~~VLDIGCGtG~~a~~La~r------~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~dae~LP--fp-d~S 531 (870)
.+...++.+|||+.++.|.=+..|+.. .|+++|+++.-+.... ....+.|+.+ .....++..++ .+ .+.
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCc
Confidence 444567899999999999655555442 3699999998665544 4556667775 34444554443 22 235
Q ss_pred eeEEEe----c-ccccc------cccCh----------HHHHHHHHhhcCCCcEEEEEECC
Q 002884 532 FDLVHC----A-RCRVP------WHIDG----------GKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 532 FDlV~S----s-~~alh------w~~D~----------~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
||.|+. + ..++. |.... ..+|..+.++|||||.|+.++..
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 999985 2 11122 22111 36789999999999999999543
No 303
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.69 E-value=0.00085 Score=71.64 Aligned_cols=94 Identities=16% Similarity=0.318 Sum_probs=71.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cc----cccccCCC-Cccchhhhhcccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DW----CESFSTYP-RSYDLLHADHLFSQL 796 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~w----ce~f~tyP-rtyDllHa~~lfS~~ 796 (870)
-|||+|||-|.++..|+..|. +|.-+|.. ..+.++..+.+.+-+. +| -|.+ ... .+||+|-|..|+-++
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl-~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDL-ASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHH-HhcCCCccEEEEhhHHHcc
Confidence 399999999999999999994 88899987 7888887666543333 22 1110 111 589998887777766
Q ss_pred cCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 797 KNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 797 ~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
. +...+|....+.|||||.++++..
T Consensus 138 ~---dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 138 P---DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEecc
Confidence 5 466799999999999999999953
No 304
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.67 E-value=0.014 Score=61.73 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=83.2
Q ss_pred chhhhhcCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCC-CCEEEEECCCCchhHHHHh----cCCEEEEeCChhh
Q 002884 425 QNWVRVTGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKY-TRVSLDVGCGVASFGGYLF----ERDVLTMSFAPKD 499 (870)
Q Consensus 425 qnWv~~~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~-~~~VLDIGCGtG~~a~~La----~r~VtgVDiSp~m 499 (870)
..-...|+..++. +.......-|..++.+.+........ ..+++|||.|.|.-+..|+ +.+|+-+|....-
T Consensus 28 ~~lL~~wN~~~NL----t~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk 103 (215)
T COG0357 28 VELLLKWNKAYNL----TAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK 103 (215)
T ss_pred HHHHHHhhHhcCC----CCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH
Confidence 3334455555554 33334444555565555443322223 5899999999997666554 3489999988774
Q ss_pred HHHHHHHHHHHcCCCcEEEEcC-cccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 500 EHDAQIQFALERGIPAISAVMG-TKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 500 l~~A~vq~A~ergl~~~~~v~d-ae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
+..-. ....+-+++++..+.+ ++.+.-...-||+|.|.. + .....++.=+...||+||.|++
T Consensus 104 ~~FL~-~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA--v---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 104 IAFLR-EVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA--V---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHH-HHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh--c---cchHHHHHHHHHhcccCCcchh
Confidence 43322 3455678887776665 455542111199999963 2 3566777778899999999865
No 305
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0032 Score=62.85 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=53.7
Q ss_pred CCCEEEEECCCCchhH--HHHhc-CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGVASFG--GYLFE-RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a--~~La~-r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.+.+++|+|||.|-+. ..+.+ ..|+|+||.|..+..+. +.+.+..+...+..++...+-+..+.||.++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 5789999999999655 33333 38999999999887665 5666666666566666666666678999999874
No 306
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.014 Score=63.44 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCC-ceeEEEeccccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRN-VFDLVHCARCRV 542 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~-SFDlV~Ss~~al 542 (870)
.++..||+||+|.|.++..|+++ .|+++++++.++..-...++ ..........|+....|+.- .++.|++| +
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaN---l 103 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVAN---L 103 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEc---C
Confidence 45789999999999999999986 89999999987655443222 11122334445666677653 58999987 5
Q ss_pred ccccChHHHHHHHH
Q 002884 543 PWHIDGGKLLLELN 556 (870)
Q Consensus 543 hw~~D~~~vL~Ei~ 556 (870)
+|..-.+-++.=+.
T Consensus 104 PY~Isspii~kll~ 117 (259)
T COG0030 104 PYNISSPILFKLLE 117 (259)
T ss_pred CCcccHHHHHHHHh
Confidence 66544444443333
No 307
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.64 E-value=0.0011 Score=73.28 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=74.0
Q ss_pred cccccccccchhHHhhhcCCC---eEEEEeccCCCCCChhHHHhhCccceeccccccccCCC-CccchhhhhcccccccC
Q 002884 723 RNVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQLKN 798 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~~~~ 798 (870)
..|||+|||+|-.|-+-+..+ |...=+-|.--..+..-+..-|+-.-+.. + .....+ ..||||-|+=+...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~~~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLVEGKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTCCS-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-EecccccccCCEEEECCCHHH---
Confidence 479999999997765555554 44443333322344444555565543322 1 123333 89999887332221
Q ss_pred CcChhhHHHhhhhcccCCcEEEEecCh-hhHHHHHHHHHcCCceEEEeecCCCceEEEEEeC
Q 002884 799 RCKLVPVMAEVDRIVRPGGKLIVRDEP-SAVTEVENFLKSLHWEILFAFSKDQEGVLSAQKG 859 (870)
Q Consensus 799 rc~~~~vl~EmDRILRPgG~~iird~~-~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K~ 859 (870)
+..++-.+.++|+|||++|++.=. .-...|...++. .|.+.....++.=..|+++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 234666789999999999999533 224666777777 888765444443446666664
No 308
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0045 Score=67.79 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=81.6
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH----HhhCccc---eeccccccccCCCCccchhhhh----
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII----YERGLFG---IYHDWCESFSTYPRSYDLLHAD---- 790 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i----~eRGlig---~~h~wce~f~tyPrtyDllHa~---- 790 (870)
+|+|||||.|..|.+|+.. +. .+|+-+|-. .-|.++ ..-||.- +..||.+... .+||+|-++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~---~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR---GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC---CceeEEEeCCCCC
Confidence 7999999999999999876 33 456666644 444332 2335432 2225655543 356664221
Q ss_pred ------------------cccccccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCc-eEEEe--ecCC
Q 002884 791 ------------------HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHW-EILFA--FSKD 849 (870)
Q Consensus 791 ------------------~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W-~~~~~--~~~~ 849 (870)
-||+...-.--+..++-+..++|+|||++++.-...-...++.++....+ ..... +-.+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 13332211112347889999999999999999877778899999999994 32221 3334
Q ss_pred CceEEEEEe
Q 002884 850 QEGVLSAQK 858 (870)
Q Consensus 850 ~e~iL~~~K 858 (870)
.++++++++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 566666554
No 309
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.56 E-value=0.017 Score=64.89 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=84.3
Q ss_pred cCCeee-cCCCCccccccHH-HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHH
Q 002884 431 TGEIIT-FPGGGTQFIHGAL-HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQ 504 (870)
Q Consensus 431 ~Ge~~~-FPgggt~F~~gA~-~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~ 504 (870)
+|+.++ |-.|+-+|+.... .|.+-+- .|.....+..++||-+|.|.|..++.|.+. +|+-+|++|.|+..+.
T Consensus 253 ~g~d~rLYldG~LQfsTrDe~RYhEsLV--~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 253 RGDDLRLYLDGGLQFSTRDEYRYHESLV--YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred ecCceEEEEcCceeeeechhhhhhheee--ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence 444454 5667777776543 2333221 222222345789999999999999999885 8999999999998776
Q ss_pred HHHHHHc---C---CCcEEEEcC-c-ccCCCCCCceeEEEecccccccccCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 505 IQFALER---G---IPAISAVMG-T-KRLQFPRNVFDLVHCARCRVPWHIDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 505 vq~A~er---g---l~~~~~v~d-a-e~LPfpd~SFDlV~Ss~~alhw~~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
....... | -|.+..+.+ + .-+--..+.||.|+.-. .-...+ ..+..-+.|.|+++|.+++..
T Consensus 331 ~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 331 HATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 3333221 1 123333333 2 22333456899998742 111111 356777889999999999874
Q ss_pred C
Q 002884 570 T 570 (870)
Q Consensus 570 ~ 570 (870)
.
T Consensus 408 g 408 (508)
T COG4262 408 G 408 (508)
T ss_pred C
Confidence 3
No 310
>PRK04457 spermidine synthase; Provisional
Probab=96.56 E-value=0.0046 Score=67.01 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=75.3
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCC-CCChhHHHhh-Ccc------ceec-cccccccCCCCccchhhhh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNS-PDTLPIIYER-GLF------GIYH-DWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~-~~tl~~i~eR-Gli------g~~h-~wce~f~tyPrtyDllHa~ 790 (870)
..+.|||+|||.|.++.+|... +- +.|.-++. +..+.++.+. ++. -+++ |.-+-+...|.+||+|=.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4578999999999999988654 32 23444444 3555555544 222 2233 2222234456789999765
Q ss_pred ccccccc--CCcChhhHHHhhhhcccCCcEEEEe---cChhh---HHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 791 HLFSQLK--NRCKLVPVMAEVDRIVRPGGKLIVR---DEPSA---VTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 791 ~lfS~~~--~rc~~~~vl~EmDRILRPgG~~iir---d~~~~---~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.|.... .......++.++-++|+|||.+++- ..... +..++.+....-+.+.. ......|++|.|
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~--~~~~N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPA--ESHGNVAVFAFK 216 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEec--CCCccEEEEEEC
Confidence 343211 1122357899999999999999983 22222 34444443322222211 223456888876
No 311
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.52 E-value=0.0017 Score=68.33 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=68.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH-HHhhCccce--------------eccccccccCCC----C
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI-IYERGLFGI--------------YHDWCESFSTYP----R 782 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~-i~eRGlig~--------------~h~wce~f~tyP----r 782 (870)
..|||+|||.|-.|.+|++++. +|+-+|.. .-+.. ..+.|+... ++-+|..|..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 4699999999999999999975 45555543 33332 233444211 122343333332 2
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEE-EEe--c-------Ch--hhHHHHHHHHHcCCceEEEe
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKL-IVR--D-------EP--SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~-iir--d-------~~--~~~~~~~~~~~~l~W~~~~~ 845 (870)
+||+|-..++|-.. .......++-.|-|+|||||.+ ++. . +. -....|+.++. -+|++...
T Consensus 113 ~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~ 185 (213)
T TIGR03840 113 PVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELL 185 (213)
T ss_pred CcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEE
Confidence 46665444444332 2344567899999999999964 332 1 11 11355666554 35777654
No 312
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.52 E-value=0.0012 Score=72.61 Aligned_cols=98 Identities=14% Similarity=0.213 Sum_probs=63.4
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh---Cc-----cceeccccccccCCCCcc-----chhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER---GL-----FGIYHDWCESFSTYPRSY-----DLLH 788 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR---Gl-----ig~~h~wce~f~tyPrty-----DllH 788 (870)
.+|||+|||+|.++..|++...=...++++|-. .+|..+.++ .. .++..|.++.+ .+|..+ .++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEEE
Confidence 569999999999999988662102378899977 788777665 22 23334554432 334333 2333
Q ss_pred hhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 789 ADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 789 a~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
+...|.... +-....+|-+|-+.|+|||.|+|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 333333332 223457899999999999999985
No 313
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.52 E-value=0.013 Score=62.22 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC----CCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF----PRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf----pd~SFDlV~ 536 (870)
+++.+||-||+++|.....+.+ ..|.++++|+..... .+..|.+|. +++-+.++.+.|. --+.+|+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rd-L~~la~~R~--NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRD-LLNLAKKRP--NIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHH-HHHHHHHST--TEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHH-HHHHhccCC--ceeeeeccCCChHHhhcccccccEEE
Confidence 4688999999999987777765 279999999975544 336666663 4555555444441 134899999
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+-- .-......++..+...||+||.|+++
T Consensus 149 ~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 149 QDV---AQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EE----SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecC---CChHHHHHHHHHHHhhccCCcEEEEE
Confidence 962 22334477888899999999999998
No 314
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.51 E-value=0.0017 Score=67.23 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=53.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh----Cc--cceeccccccccCCC--Cccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER----GL--FGIYHDWCESFSTYP--RSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h~wce~f~tyP--rtyDllHa~~lf 793 (870)
..|||+|||+|.+++.|....- .|+-++.. +.+..+.++ |+ +-+.+.- .+..+| ..||+|.+++.+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD--GWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC--cccCCCcCCCcCEEEEccCc
Confidence 4699999999999988776521 23344433 444443332 44 3333321 123443 689998875433
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
..+.-++-+.|+|||.+++.
T Consensus 155 ---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 155 ---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred ---------hhhhHHHHHhcCCCcEEEEE
Confidence 23455677899999999985
No 315
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.49 E-value=0.0081 Score=66.13 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEc-Cc-ccCC-C-CCCceeEEEe
Q 002884 467 YTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIP--AISAVM-GT-KRLQ-F-PRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~-da-e~LP-f-pd~SFDlV~S 537 (870)
.+++|||+=|=||.|+.+.+.. .|+.||.|...+..++.+++.. +++ .+.++. +. ..+. + ..+.||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999998776543 7999999999999988655544 432 344444 32 1121 1 2468999998
Q ss_pred cccccc---c--ccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 538 ARCRVP---W--HIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 538 s~~alh---w--~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
-.-++. + ..+...++..+.++|+|||+|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 422111 1 12336788899999999999998743
No 316
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.48 E-value=0.0019 Score=68.15 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=73.5
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhH-HHhhCccce--------------eccccccccCC---C-Cc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPI-IYERGLFGI--------------YHDWCESFSTY---P-RS 783 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~-i~eRGlig~--------------~h~wce~f~ty---P-rt 783 (870)
.|||.|||.|--|.+|+++|. +|+.+|-. .-+.. +.++|+... ++-+|..+..+ + .+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999999987 67777754 44443 456776432 12233333333 2 36
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEE-e-----c----Ch--hhHHHHHHHHHcCCceEEEe
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIV-R-----D----EP--SAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~ii-r-----d----~~--~~~~~~~~~~~~l~W~~~~~ 845 (870)
||+|-..++|.... ......++-.|.|+|+|||.+++ . + ++ -..+.|+.++.. +|++...
T Consensus 117 fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 117 VDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred eeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEe
Confidence 77766555555442 24456899999999999996443 2 1 11 124666666642 3887654
No 317
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.45 E-value=0.00072 Score=71.34 Aligned_cols=99 Identities=20% Similarity=0.368 Sum_probs=69.2
Q ss_pred ccccccccccccccccchhHHhhhcCC----CeEEEEeccCCCCCChhHHHhhC-ccceeccccccccCCCCccchhhhh
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSPDTLPIIYERG-LFGIYHDWCESFSTYPRSYDLLHAD 790 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~~tl~~i~eRG-lig~~h~wce~f~tyPrtyDllHa~ 790 (870)
...|..++.|+|+|+|.|.++++|... .++|+ |.|..+..+.+.. +--+=||+. .++|. ||++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~gd~f---~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPGDFF---DPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES-TT---TCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccccHH---hhhcc-ccceeee
Confidence 467889999999999999999999754 34444 3343344444432 223334554 67888 9999888
Q ss_pred cccccccCCcChhhHHHhhhhcccCC--cEEEEecC
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPG--GKLIVRDE 824 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPg--G~~iird~ 824 (870)
+++-.+.+ -....||--+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 88877754 23346999999999999 99999864
No 318
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.45 E-value=0.003 Score=70.27 Aligned_cols=115 Identities=11% Similarity=0.167 Sum_probs=68.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH----HhhCccc--eeccccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII----YERGLFG--IYHDWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i----~eRGlig--~~h~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
..|||.+||+|+|...+...+. .|+-+|.. .++... ..-|+-. +++.=...++..+.+||+|-++--|..
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 4699999999999765544443 34444543 333322 2235544 323222232222378999888633322
Q ss_pred ---ccC---CcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEE
Q 002884 796 ---LKN---RCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 796 ---~~~---rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~ 843 (870)
... ......+|-++-|+|+|||++++--+... .++++++.-.| +.
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR-VV 311 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc-ch
Confidence 111 12356899999999999999887654432 45566788888 53
No 319
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.43 E-value=0.0022 Score=69.00 Aligned_cols=107 Identities=20% Similarity=0.334 Sum_probs=66.9
Q ss_pred cccccccccchhHHhhhcCC----------CeEEEEeccCCCCCChhHHHhhC----ccce-----eccccccccCCC-C
Q 002884 723 RNVMDMRAVYGGFAAALKDL----------QVWVMNVVNVNSPDTLPIIYERG----LFGI-----YHDWCESFSTYP-R 782 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~----------~vwvmNvvp~~~~~tl~~i~eRG----lig~-----~h~wce~f~tyP-r 782 (870)
-+||||++|+|-.|=.+.+. .|.|.-+ +|.+|.+...|- |-.- +-.-.|.++ || .
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di----np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~ 176 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI----NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDD 176 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC----CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCC
Confidence 46999999999877766543 3444332 457777765554 4332 112346766 87 8
Q ss_pred ccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecChhhH-HHHHHHHHc
Q 002884 783 SYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAV-TEVENFLKS 837 (870)
Q Consensus 783 tyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~-~~~~~~~~~ 837 (870)
+||+.-.. |+. .+--.+..+|-|+.|||+|||.|.+=+=..+- ..|+.++..
T Consensus 177 s~D~yTia--fGI-RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 177 SFDAYTIA--FGI-RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred cceeEEEe--cce-ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 99985431 111 12134788999999999999998876543333 344444444
No 320
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.31 E-value=0.0031 Score=68.26 Aligned_cols=90 Identities=19% Similarity=0.411 Sum_probs=69.1
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceec-cccccccCCCCccchhhhhcccccccCC
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYH-DWCESFSTYPRSYDLLHADHLFSQLKNR 799 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h-~wce~f~tyPrtyDllHa~~lfS~~~~r 799 (870)
..++||+|||-|+.-+.|+.. .-.|..++.. .+.-...+||+--+-. +|-+. +..||+|-|-+|+ +|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----DR 163 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----DR 163 (265)
T ss_pred CCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----hc
Confidence 567999999999999999764 1234455554 6788889999753333 47543 5679999997776 57
Q ss_pred cChh-hHHHhhhhcccCCcEEEEe
Q 002884 800 CKLV-PVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 800 c~~~-~vl~EmDRILRPgG~~iir 822 (870)
|.-+ .+|-+|-+.|+|+|.+|+.
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEE
Confidence 8865 7888999999999999998
No 321
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.27 E-value=0.0016 Score=67.69 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=74.1
Q ss_pred ccccccccchhHHhhhcCC--CeEEEEeccCCCC-----CChhHHHhhCccceecccccccc---C-C-CCccchhhhhc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESFS---T-Y-PRSYDLLHADH 791 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f~---t-y-PrtyDllHa~~ 791 (870)
.+||+|||.|.|..+|+.. +. |++-++-. ..+..+..+||--+.--.|.+.. . + |.+.|.||-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i-- 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI-- 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--
T ss_pred eEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--
Confidence 5999999999999999754 33 44444432 45666777888555544444433 1 2 378888776
Q ss_pred ccccc------cCCcCh-hhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcC--CceEE
Q 002884 792 LFSQL------KNRCKL-VPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSL--HWEIL 843 (870)
Q Consensus 792 lfS~~------~~rc~~-~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l--~W~~~ 843 (870)
.|..= .+|..+ ...|-++-|+|+|||.|.|. |...+...+...+... .++..
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 45421 123333 47888999999999999876 7777777787777775 45543
No 322
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.24 E-value=0.016 Score=65.54 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=40.1
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM 520 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~ 520 (870)
..|||+-||+|.|+..|+.. .|+|+++.+.++..|. ..|...++.+..++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIR 250 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE
T ss_pred CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEE
Confidence 38999999999999999986 9999999999998887 567777887766654
No 323
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.19 E-value=0.039 Score=58.48 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCC---CcEEEEcCc--ccCC-CCCCceeEEE
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGI---PAISAVMGT--KRLQ-FPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl---~~~~~v~da--e~LP-fpd~SFDlV~ 536 (870)
.++++||.||-|-|.....+.++ .-+.++..|.-+.. .+..|. .++..+.+. ..+| ++++.||-|+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr-----mr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR-----MRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH-----HHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 36899999999999988888776 55667887764322 222222 234444442 2233 6788999998
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
--- .-....|...+...+.|+|||+|+|-+.
T Consensus 175 yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 175 YDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 742 1244467788889999999999999875
No 324
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.18 E-value=0.031 Score=63.01 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-Cc-ccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GT-KRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-da-e~LPfpd~SFDlV~Ss~~a 541 (870)
.++.++|||||++|.|+..|.++ .|++||..+-. . .. +.-+.+.... +. ...| +.+.+|+|+|-..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~--~----~L--~~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA--Q----SL--MDTGQVEHLRADGFKFRP-PRKNVDWLVCDMV- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC--H----hh--hCCCCEEEEeccCcccCC-CCCCCCEEEEecc-
Confidence 46889999999999999999987 79999976631 1 11 1223333333 33 2233 2678999999632
Q ss_pred cccccChHHHHHHHHhhcCCC--cEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPG--GYFVWS 568 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPG--G~Lv~S 568 (870)
..+..++.-|.+-|..| ..++|.
T Consensus 280 ----e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 ----EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred ----cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 45667777777777666 456665
No 325
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.09 E-value=0.025 Score=66.92 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=44.0
Q ss_pred CCCEEEEECCCCchhHHHHhc------------CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccC---CCCC
Q 002884 467 YTRVSLDVGCGVASFGGYLFE------------RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRL---QFPR 529 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~------------r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~L---Pfpd 529 (870)
...+|||.|||+|.|...++. ..++|+|+++..+..+.................+. ..+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356899999999988766643 26799999998877766544332212111111111 001 1112
Q ss_pred CceeEEEecc
Q 002884 530 NVFDLVHCAR 539 (870)
Q Consensus 530 ~SFDlV~Ss~ 539 (870)
+.||+|++|.
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999974
No 326
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.039 Score=57.33 Aligned_cols=99 Identities=22% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcC--CCcEEEEcCcc-cCCCCCC--ceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERG--IPAISAVMGTK-RLQFPRN--VFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~erg--l~~~~~v~dae-~LPfpd~--SFDlV~S 537 (870)
-.+.++||+=+|+|.++..-+.+ .++.||.+......... .....+ .....+..++. .|+-... .||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~-N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKE-NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHH-HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 35789999999999999888876 89999999986655543 333334 33444555543 2222222 4999998
Q ss_pred cccccccccCh---HHHHHH--HHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDG---GKLLLE--LNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~---~~vL~E--i~RVLKPGG~Lv~S 568 (870)
-. +|..+. ...+.. -...|+|||.+++.
T Consensus 121 DP---Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 121 DP---PYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CC---CCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 53 344332 222332 45789999999997
No 327
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.07 E-value=0.011 Score=52.25 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=56.4
Q ss_pred cccccccchh--HHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----c--cceec-cccccccCCC--Cccchhhhhcc
Q 002884 725 VMDMRAVYGG--FAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----L--FGIYH-DWCESFSTYP--RSYDLLHADHL 792 (870)
Q Consensus 725 vmDm~ag~Gg--faaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----l--ig~~h-~wce~f~tyP--rtyDllHa~~l 792 (870)
|+|+|||.|. +.+.+...+..+.. ++.. ..+.....+. + +..+. ++.....+++ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 55566555433333 3333 2333322222 1 22333 4444234444 389998 6333
Q ss_pred cccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 793 FSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 793 fS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 678999999999999999998654
No 328
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.07 E-value=0.0053 Score=70.78 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=62.8
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHH---Hhh-Cccceecccc-ccc--cC--CCCccchhhhh-
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPII---YER-GLFGIYHDWC-ESF--ST--YPRSYDLLHAD- 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i---~eR-Glig~~h~wc-e~f--~t--yPrtyDllHa~- 790 (870)
..|||||||.||++.+|+.. + --.|+-+|.. ..|..+ .+| |+-..++.-| ..+ .. -+.+||.|.++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46999999999999888764 2 0124444543 444433 332 5531111111 111 12 13789998754
Q ss_pred -----cccccccC---C---------c-ChhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHc
Q 002884 791 -----HLFSQLKN---R---------C-KLVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKS 837 (870)
Q Consensus 791 -----~lfS~~~~---r---------c-~~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~ 837 (870)
|+|..... + . .-..+|.++-|+|||||.+|+.. +.+-...|+.++..
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 44432110 0 0 01369999999999999999982 22334444445443
No 329
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.00 E-value=0.038 Score=60.31 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC--cE--EEEcCcccCCCCCCceeEEEec
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP--AI--SAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~--~~--~~v~dae~LPfpd~SFDlV~Ss 538 (870)
.++...||+||.|||.++..|++. .|++++++|.|+.+-..+. .|.+ .. +.+++...+++ -.||+++++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d~--P~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTDL--PRFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCCC--cccceeecc
Confidence 467889999999999999999875 9999999999987655332 3443 22 23333333333 349999997
No 330
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.00 E-value=0.021 Score=60.27 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=65.6
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHHHhhCccceec-cccccccCCCCccchhhhhcccccccCCcC
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPIIYERGLFGIYH-DWCESFSTYPRSYDLLHADHLFSQLKNRCK 801 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i~eRGlig~~h-~wce~f~tyPrtyDllHa~~lfS~~~~rc~ 801 (870)
.|-|||||-|-.|+++.+. .|.-.-+++.... +.. |. ...+-=+.+.|++-. -+|+-. -+
T Consensus 75 viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-------------Vtacdi-a~vPL~~~svDv~Vf--cLSLMG--Tn 136 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-------------VTACDI-ANVPLEDESVDVAVF--CLSLMG--TN 136 (219)
T ss_dssp -EEEES-TT-HHHHH--S---EEEEESS-SSTT-------------EEES-T-TS-S--TT-EEEEEE--ES---S--S-
T ss_pred EEEECCCchHHHHHhcccCceEEEeeccCCCCC-------------EEEecC-ccCcCCCCceeEEEE--EhhhhC--CC
Confidence 5899999999999988643 4555555554321 111 22 222222378887432 122212 36
Q ss_pred hhhHHHhhhhcccCCcEEEEecCh---hhHHHHHHHHHcCCceEEEeecCCC-ceEEEEEeCC
Q 002884 802 LVPVMAEVDRIVRPGGKLIVRDEP---SAVTEVENFLKSLHWEILFAFSKDQ-EGVLSAQKGN 860 (870)
Q Consensus 802 ~~~vl~EmDRILRPgG~~iird~~---~~~~~~~~~~~~l~W~~~~~~~~~~-e~iL~~~K~~ 860 (870)
..+.|.|..|||||||.++|..-. .-+..-...+.+|..++...+..+. -.++..+|.-
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 779999999999999999998532 3345556778899999987654443 3455556644
No 331
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.92 E-value=0.0038 Score=66.45 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=70.7
Q ss_pred ccccccccccccchhH----HhhhcCCC-eEEEEeccCCCCCChhHHHhhCc---cceec-cccccccCC-----CCccc
Q 002884 720 SNVRNVMDMRAVYGGF----AAALKDLQ-VWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCESFSTY-----PRSYD 785 (870)
Q Consensus 720 ~~~RnvmDm~ag~Ggf----aaaL~~~~-vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce~f~ty-----PrtyD 785 (870)
..-++|||+|||+|.- |+++...+ |+.+=+-|.-..-....+..-|+ |-+++ +..+.+..+ ..+||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3467899999888863 33443332 33322222111112222334454 44444 444443332 35899
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-----------------hhHHHHHHHHHcC----CceEEE
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-----------------SAVTEVENFLKSL----HWEILF 844 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-----------------~~~~~~~~~~~~l----~W~~~~ 844 (870)
+|-.++--. ....++.++-|+|||||.+|+.+.. .....|+++.+.+ +|...+
T Consensus 147 ~VfiDa~k~------~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~ 220 (234)
T PLN02781 147 FAFVDADKP------NYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ 220 (234)
T ss_pred EEEECCCHH------HHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 987754322 3345778889999999999975311 0123444444444 444433
Q ss_pred eecCCCceEEEEEeC
Q 002884 845 AFSKDQEGVLSAQKG 859 (870)
Q Consensus 845 ~~~~~~e~iL~~~K~ 859 (870)
. .-..++++++|.
T Consensus 221 l--p~gdG~~i~~k~ 233 (234)
T PLN02781 221 I--SIGDGVTLCRRL 233 (234)
T ss_pred E--EeCCccEEEEEe
Confidence 2 125789999885
No 332
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.91 E-value=0.014 Score=64.71 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=34.9
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQ 506 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq 506 (870)
.++..+||++||.|.++..+++. .|+|+|.++.++..+...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 45779999999999999888764 699999999998887643
No 333
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.86 E-value=0.047 Score=61.54 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=80.9
Q ss_pred CCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCc-
Q 002884 440 GGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPA- 515 (870)
Q Consensus 440 ggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~- 515 (870)
...+|+.+-..=..++...+. .+.+|||+=||.|.|+..++.. .|+++|++|..+...+ +.++..++..
T Consensus 167 ~Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~ 239 (341)
T COG2520 167 AKVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGR 239 (341)
T ss_pred HHeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccce
Confidence 334555554433344555433 4899999999999999888764 5999999998877766 3444445444
Q ss_pred EEEEc-CcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 516 ISAVM-GTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 516 ~~~v~-dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+..+. |...++..-+.||-|++++ . .....++..+.+.|++||.+.+-
T Consensus 240 v~~i~gD~rev~~~~~~aDrIim~~--p---~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 240 VEPILGDAREVAPELGVADRIIMGL--P---KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred eeEEeccHHHhhhccccCCEEEeCC--C---CcchhhHHHHHHHhhcCcEEEEE
Confidence 33444 4455554448899999874 1 23467888889999999999876
No 334
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.85 E-value=0.0089 Score=69.25 Aligned_cols=118 Identities=20% Similarity=0.361 Sum_probs=66.9
Q ss_pred cccccccccchhHHhhhcCC--CeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCCCccchhhhh--
Q 002884 723 RNVMDMRAVYGGFAAALKDL--QVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYPRSYDLLHAD-- 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~--~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyPrtyDllHa~-- 790 (870)
..|||||||.|+++.+|.+. +- ..|+-+|.. ..+..+.+ .|+ +-+++ |..+....++++||+|-++
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 56999999999999888764 11 133444443 44444332 354 23333 4433333456899997554
Q ss_pred ----ccccccc------CCcCh-------hhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHcC-CceE
Q 002884 791 ----HLFSQLK------NRCKL-------VPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 791 ----~lfS~~~------~rc~~-------~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~l-~W~~ 842 (870)
|++.... ....+ ..+|.++-|+|||||.+|+.- ..+....++.+++.. .|++
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 3333110 00111 257899999999999999762 123344555555553 2544
No 335
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.78 E-value=0.062 Score=56.57 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCCchhHHHHh---cC-CEEEEeCChhhHHHHHHHHH------HHcCCC--cEEEEcCc-ccCCCCC---
Q 002884 466 KYTRVSLDVGCGVASFGGYLF---ER-DVLTMSFAPKDEHDAQIQFA------LERGIP--AISAVMGT-KRLQFPR--- 529 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La---~r-~VtgVDiSp~ml~~A~vq~A------~ergl~--~~~~v~da-e~LPfpd--- 529 (870)
.+....+|||||.|......+ .. ..+||++.+.....|..... ...|.. .+.+..++ ...++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 457899999999997543322 23 59999999975544432211 112321 12222222 1111100
Q ss_pred CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEE
Q 002884 530 NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVW 567 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~ 567 (870)
..-|+|+++. +-|.++....|.++..-||||-+++-
T Consensus 121 s~AdvVf~Nn--~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNN--TCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE----TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEec--cccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2359999985 33556667788889999999988764
No 336
>PRK00811 spermidine synthase; Provisional
Probab=95.72 E-value=0.0078 Score=65.90 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=58.2
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHHHhh------Cc-----cceeccccccccC-CCCccchh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPIIYER------GL-----FGIYHDWCESFST-YPRSYDLL 787 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i~eR------Gl-----ig~~h~wce~f~t-yPrtyDll 787 (870)
.-++||++|||.|++++.|.+. ++--+-+|.++. ..+.++.+. |+ +-++++-...|.. -+.+||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999998876 553233333332 333333321 21 2334433333332 24789998
Q ss_pred hhhcccccccC--CcChhhHHHhhhhcccCCcEEEEe
Q 002884 788 HADHLFSQLKN--RCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 788 Ha~~lfS~~~~--rc~~~~vl~EmDRILRPgG~~iir 822 (870)
=++. +..+.. .---...+..+-|+|+|||.+++.
T Consensus 155 i~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 6642 111100 000135677899999999999986
No 337
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.72 E-value=0.014 Score=62.92 Aligned_cols=123 Identities=16% Similarity=0.243 Sum_probs=81.8
Q ss_pred ccccccccccchhHHhhhcCC-C-eEEEEeccCCCC------CChhHHHhhCccceeccccccccCC-C-Cccchhhhhc
Q 002884 722 VRNVMDMRAVYGGFAAALKDL-Q-VWVMNVVNVNSP------DTLPIIYERGLFGIYHDWCESFSTY-P-RSYDLLHADH 791 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~-~-vwvmNvvp~~~~------~tl~~i~eRGlig~~h~wce~f~ty-P-rtyDllHa~~ 791 (870)
...|||+|||.|..+-+|..+ + += +-.|.++.. .++...-=-.-|-++|+--..|... + .+||+|-|+=
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 567999999999999888877 3 31 122333321 1111111112366666422222222 3 3699975554
Q ss_pred ccc---------------cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe
Q 002884 792 LFS---------------QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 792 lfS---------------~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
=|= .+...|.+++++-=.-++|+|||++.+=-+.+-+..+-.++++++|.....
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEE
Confidence 332 223458899999999999999999999999999999999999999998643
No 338
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.65 E-value=0.04 Score=57.60 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCCEEEEECCCCchhHH--HHhcC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccccc
Q 002884 467 YTRVSLDVGCGVASFGG--YLFER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRVP 543 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~--~La~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~alh 543 (870)
.+++|||+|.|+|..+. .++.. .|+..|+.|....... -.+...|+...+ +. ...+ ..+..||+|+.+.. +.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~-lNa~angv~i~~-~~-~d~~-g~~~~~Dl~LagDl-fy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIR-LNAAANGVSILF-TH-ADLI-GSPPAFDLLLAGDL-FY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhh-cchhhccceeEE-ee-cccc-CCCcceeEEEeece-ec
Confidence 57899999999996554 34433 8999999986443333 334445543222 22 2222 36778999999763 22
Q ss_pred cccChHHHHHHHHhhcCCCcEEEEEECCCcCchhH
Q 002884 544 WHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGE 578 (870)
Q Consensus 544 w~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~E 578 (870)
-+.....++. +.+.|+-.|.-++...|....++.
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk 187 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYLPK 187 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCCch
Confidence 2222345555 777777777766665666665554
No 339
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.57 E-value=0.075 Score=65.34 Aligned_cols=118 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc----cceec-cccccccCCCCccchhhhhc-
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL----FGIYH-DWCESFSTYPRSYDLLHADH- 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl----ig~~h-~wce~f~tyPrtyDllHa~~- 791 (870)
+.|||++||+|+|+.+++..+.- .|+-+|.. ..+..+.+ -|+ +-+++ |..+-+..++++||+|=+|-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57999999999999999987652 35556654 44443322 244 22333 44332223467899986642
Q ss_pred ----------ccccccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe
Q 002884 792 ----------LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 792 ----------lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
+|+... ....++..+-|+|+|||.+++.....-+......+....+.+.+.
T Consensus 618 ~f~~~~~~~~~~~~~~---~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQR---DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHH---HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 221111 244678888999999999999765555555577777778888765
No 340
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.51 E-value=0.026 Score=61.28 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=71.7
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhh-----C-----ccceec-cccccccCCCCccchh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYER-----G-----LFGIYH-DWCESFSTYPRSYDLL 787 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eR-----G-----lig~~h-~wce~f~tyPrtyDll 787 (870)
.-++||++|||.|+++..|.+.+ + .+++-++.. ..+..+.+. | -+-+++ |-.+-+...+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 45689999999999999887764 4 233333333 333333221 1 112222 2212112336899998
Q ss_pred hhhccccccc-CCcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCceEEEe------ecCCCceEEE
Q 002884 788 HADHLFSQLK-NRCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWEILFA------FSKDQEGVLS 855 (870)
Q Consensus 788 Ha~~lfS~~~-~rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~~~~~------~~~~~e~iL~ 855 (870)
=++....... ...-....+-.+-|+|+|||.+++.-. ...+..+...++..=..+... +....-.+++
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~ 229 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTI 229 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEE
Confidence 6654321111 111124567788999999999998632 222333333333332222221 1223356888
Q ss_pred EEe
Q 002884 856 AQK 858 (870)
Q Consensus 856 ~~K 858 (870)
|.|
T Consensus 230 as~ 232 (270)
T TIGR00417 230 GSK 232 (270)
T ss_pred EEC
Confidence 887
No 341
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.50 E-value=0.03 Score=61.43 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=70.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccC-C-CCCCceeEEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRL-Q-FPRNVFDLVH 536 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~L-P-fpd~SFDlV~ 536 (870)
..++..|||+.+|.|.=+..|+. ..|++.|+++.-+.... ..+.+.|+.++..+. +...+ + .....||.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 45788999999999976555554 27999999998766554 455566777666553 33222 2 2334699998
Q ss_pred e-cccc----cccccCh----------------HHHHHHHHhhc----CCCcEEEEEECC
Q 002884 537 C-ARCR----VPWHIDG----------------GKLLLELNRVL----RPGGYFVWSATP 571 (870)
Q Consensus 537 S-s~~a----lhw~~D~----------------~~vL~Ei~RVL----KPGG~Lv~S~~p 571 (870)
. ..|+ +.-+++. ..+|..+.+.| ||||+++.++..
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 5 1121 1111111 26789999999 999999999643
No 342
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.44 E-value=0.0019 Score=59.77 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=58.9
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCc---cceecccccccc-CCC-Cccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGL---FGIYHDWCESFS-TYP-RSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGl---ig~~h~wce~f~-tyP-rtyDllHa~~lf 793 (870)
.|||+|||.|.|+.++.... ..+++-+|-. ..+.+.. ..|+ +.+++.-...+. .++ ..||+|=++--|
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999998775 2344444432 2222211 1222 556663223333 454 899999888777
Q ss_pred cccc-----CCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLK-----NRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~-----~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.... .+=....++.++.|+|||||.+++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6431 1113457889999999999999873
No 343
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.41 E-value=0.012 Score=63.57 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=55.9
Q ss_pred ccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHH---hh-Cc--cceeccccccccCCCCccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIY---ER-GL--FGIYHDWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~---eR-Gl--ig~~h~wce~f~tyPrtyDllHa~~lf 793 (870)
.||||+||.||++.+|... .- .|+.+|.. ..+..+. +| |+ +-+++.=...+......||.|-.|-=.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 4999999999999777553 11 24555654 4443332 22 44 233332222333333569998654333
Q ss_pred cccc------C----Cc---------ChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLK------N----RC---------KLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~------~----rc---------~~~~vl~EmDRILRPgG~~iir 822 (870)
|... . +. ....+|-++-|+|||||++|+.
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3210 0 00 1125899999999999999998
No 344
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.41 E-value=0.011 Score=65.47 Aligned_cols=116 Identities=14% Similarity=0.228 Sum_probs=79.0
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCCCChhHHHhhCcccee---cc---ccccccCCCCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSPDTLPIIYERGLFGIY---HD---WCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~~tl~~i~eRGlig~~---h~---wce~f~tyPrtyDllHa~~lfS~ 795 (870)
|.|||+|||-|-+.=.|+..+- -|+=+=|..- -.+++-+-+-++|.- |- =-|.++. ..+||+|-|.|||=+
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 6799999999999988887765 4444433322 344455555555421 11 1244444 689999999999865
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe-----cC----------------hh---hHHHHHHHHHcCCceEE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR-----DE----------------PS---AVTEVENFLKSLHWEIL 843 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir-----d~----------------~~---~~~~~~~~~~~l~W~~~ 843 (870)
. =+..+.|.++-..|||||-+|+- .. +. .+..|+..+++..+.-.
T Consensus 195 r---r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 195 R---RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred c---CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence 3 34556999999999999999976 11 11 15778888888888753
No 345
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.11 Score=59.38 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHh--cC-----------------------------------------
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLF--ER----------------------------------------- 488 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La--~r----------------------------------------- 488 (870)
-+.|+..+..+..-.++..++|-=||+|.+....+ ..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 34444444433333445799999999998764332 21
Q ss_pred CEEEEeCChhhHHHHHHHHHHHcCCC--cEEEEcCcccCCCCCCceeEEEecccccccccCh----------HHHHHHHH
Q 002884 489 DVLTMSFAPKDEHDAQIQFALERGIP--AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDG----------GKLLLELN 556 (870)
Q Consensus 489 ~VtgVDiSp~ml~~A~vq~A~ergl~--~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~----------~~vL~Ei~ 556 (870)
.++|+|+++.++..|+ ..|+..|+. +.+.+.+...++-+-+.+|+|+||. +|-... ..+...+.
T Consensus 256 ~~~G~Did~r~i~~Ak-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk 331 (381)
T COG0116 256 IIYGSDIDPRHIEGAK-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLK 331 (381)
T ss_pred eEEEecCCHHHHHHHH-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHH
Confidence 1679999999999988 577788876 3334445566654437899999983 443211 23445666
Q ss_pred hhcCCCcEEEEEE
Q 002884 557 RVLRPGGYFVWSA 569 (870)
Q Consensus 557 RVLKPGG~Lv~S~ 569 (870)
++++--+.++|++
T Consensus 332 ~~~~~ws~~v~tt 344 (381)
T COG0116 332 RLLAGWSRYVFTT 344 (381)
T ss_pred HHhcCCceEEEEc
Confidence 7888888899884
No 346
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.37 E-value=0.038 Score=56.24 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=44.7
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc--c---cCCCCCCceeEEEec
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT--K---RLQFPRNVFDLVHCA 538 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da--e---~LPfpd~SFDlV~Ss 538 (870)
.+|||+.||.|..+..++.. .|+++|+++..+..++ ..|.-.|+. .+.++.++ . .+..... ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEEC
Confidence 37999999999999999886 8999999999888776 566777754 45566553 2 2222222 7999876
No 347
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.37 E-value=0.021 Score=61.06 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=62.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-------Cccceec-cccccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-------GLFGIYH-DWCESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-------Glig~~h-~wce~f~tyPrtyDllHa~~lf 793 (870)
+.|||+|||+|+|+..|.+.++ -.|+.+|.. ++|..-+.. +..-+-+ +|.+-...++ +||+. |
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~-~~Dvs-----f 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA-TFDVS-----F 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce-eeeEE-----E
Confidence 5699999999999999998864 334555544 354432211 2222222 4444322222 44432 2
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe-------------------cC---hhhHHHHHHHHHcCCceEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR-------------------DE---PSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir-------------------d~---~~~~~~~~~~~~~l~W~~~~ 844 (870)
+++..+|-.|.++|+| |.+|+= |. ..++.++...+..+.|.+.-
T Consensus 149 ------iS~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 149 ------ISLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred ------eehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 1334477788888888 776644 22 23356677777788888753
No 348
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.33 E-value=0.058 Score=58.56 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=72.2
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcChh
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLV 803 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~~ 803 (870)
.|-|||||-|-.|. =...+|..|-+++++..=+. -|. ...+.-.+|.|++-. -+|+-. -++.
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~------------cDm-~~vPl~d~svDvaV~--CLSLMg--tn~~ 244 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIA------------CDM-RNVPLEDESVDVAVF--CLSLMG--TNLA 244 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCceee------------ccc-cCCcCccCcccEEEe--eHhhhc--ccHH
Confidence 38899999887664 22347888988888764210 011 111222389998433 122221 3677
Q ss_pred hHHHhhhhcccCCcEEEEecChh---hHHHHHHHHHcCCceEEEeecCCCc-eEEEEEe
Q 002884 804 PVMAEVDRIVRPGGKLIVRDEPS---AVTEVENFLKSLHWEILFAFSKDQE-GVLSAQK 858 (870)
Q Consensus 804 ~vl~EmDRILRPgG~~iird~~~---~~~~~~~~~~~l~W~~~~~~~~~~e-~iL~~~K 858 (870)
+.+.|..|||+|||.++|..-.. -+.....-+..|..++...+..+.. .++..+|
T Consensus 245 df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 245 DFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred HHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 99999999999999999985322 2333555678899988765444433 3333344
No 349
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.32 E-value=0.022 Score=66.02 Aligned_cols=116 Identities=20% Similarity=0.356 Sum_probs=65.7
Q ss_pred ccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHh----hCcc--ceecccccccc----CCCCccchhhh
Q 002884 724 NVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYE----RGLF--GIYHDWCESFS----TYPRSYDLLHA 789 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~e----RGli--g~~h~wce~f~----tyPrtyDllHa 789 (870)
.|||||||.||++.+|... .- .|+-+|.. ..+..+.+ -|+- -+++.=...+. ..+.+||.|-+
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQG---EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 5999999999999888754 11 24444543 44444332 2442 22221111222 12368999765
Q ss_pred h------cccccccC------CcC-------hhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHcC-CceE
Q 002884 790 D------HLFSQLKN------RCK-------LVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKSL-HWEI 842 (870)
Q Consensus 790 ~------~lfS~~~~------rc~-------~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~l-~W~~ 842 (870)
+ |++..-.. ... ...+|.++-|+|||||.+|+.. +.+-...|...++.. .|++
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 4 33321100 011 2478999999999999998773 334456666666654 3554
No 350
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=0.026 Score=65.95 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=63.6
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHH
Q 002884 431 TGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFA 508 (870)
Q Consensus 431 ~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A 508 (870)
.|=.|+|+.+ .|..-...-.+.|-.++...+....+..+||+-||||.++..|+++ .|+|++++|..+..|. ..|
T Consensus 349 ~~ltF~iSp~--AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA 425 (534)
T KOG2187|consen 349 LGLTFRISPG--AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNA 425 (534)
T ss_pred CCeEEEECCc--hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcc
Confidence 3444555433 2333333334444455544444455689999999999999999987 9999999999888887 577
Q ss_pred HHcCCCcEEEEcC-ccc
Q 002884 509 LERGIPAISAVMG-TKR 524 (870)
Q Consensus 509 ~ergl~~~~~v~d-ae~ 524 (870)
...|+.+..++.+ ++.
T Consensus 426 ~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 426 QINGISNATFIVGQAED 442 (534)
T ss_pred hhcCccceeeeecchhh
Confidence 7889988888887 443
No 351
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.19 E-value=0.015 Score=67.09 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=64.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---hh-Cc-cceec-cccccccCC-CCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---ER-GL-FGIYH-DWCESFSTY-PRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---eR-Gl-ig~~h-~wce~f~ty-PrtyDllHa~~lfS 794 (870)
..|||+|||.|+++.+|.+..- -..|+-+|.. ..+..+. +| |+ +.+++ |..+....+ +.+||+|-++.=+|
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 3599999999999988876520 0134445543 4444432 22 33 22222 333321223 36899987444333
Q ss_pred cc----cC------C---------cChhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHc
Q 002884 795 QL----KN------R---------CKLVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKS 837 (870)
Q Consensus 795 ~~----~~------r---------c~~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~ 837 (870)
.. ++ + .....+|.++-|+|||||.+++.. +.+-...++..+++
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 11 00 0 112368889999999999999874 23334455555544
No 352
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.05 E-value=0.096 Score=58.93 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC--------------------CEEEEeCChhhHHHHHHHHHHH-----cCCC-cEEEEc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--------------------DVLTMSFAPKDEHDAQIQFALE-----RGIP-AISAVM 520 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--------------------~VtgVDiSp~ml~~A~vq~A~e-----rgl~-~~~~v~ 520 (870)
..-+|+|+||..|..+..+... .|+--|+-.++...-....... ...+ ....+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4568999999999655444320 4666688777765433222111 1111 122233
Q ss_pred Cc-ccCCCCCCceeEEEecccccccc
Q 002884 521 GT-KRLQFPRNVFDLVHCARCRVPWH 545 (870)
Q Consensus 521 da-e~LPfpd~SFDlV~Ss~~alhw~ 545 (870)
+. ..--||+++.|+++|+. ++||.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~-alHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSY-ALHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-
T ss_pred chhhhccCCCCceEEEEEec-hhhhc
Confidence 32 22238899999999985 59997
No 353
>PRK01581 speE spermidine synthase; Validated
Probab=94.98 E-value=0.049 Score=61.96 Aligned_cols=140 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHh--------hC-c----cceec-cccccccCCCCcc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYE--------RG-L----FGIYH-DWCESFSTYPRSY 784 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~e--------RG-l----ig~~h-~wce~f~tyPrty 784 (870)
.-++||++|+|.|+.++.+.+.+ + .+|+-++-. ..+.++.+ +| + +-+++ |-.+-+..-++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 46799999999999999888764 3 344445443 44555443 11 1 11222 2222122234789
Q ss_pred chhhhhccccccc--CCcChhhHHHhhhhcccCCcEEEEecCh-----hhHHHHHHHHHcCCceEEEeec-----CCCce
Q 002884 785 DLLHADHLFSQLK--NRCKLVPVMAEVDRIVRPGGKLIVRDEP-----SAVTEVENFLKSLHWEILFAFS-----KDQEG 852 (870)
Q Consensus 785 DllHa~~lfS~~~--~rc~~~~vl~EmDRILRPgG~~iird~~-----~~~~~~~~~~~~l~W~~~~~~~-----~~~e~ 852 (870)
|+|=++--..... .+.--...+-.+-|.|+|||.|++.... .+...+...++.....+..... ...=.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~Wg 307 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWG 307 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceE
Confidence 9987762111100 1111135778899999999999887432 2223344445554444433211 12256
Q ss_pred EEEEEeCCCC
Q 002884 853 VLSAQKGNWQ 862 (870)
Q Consensus 853 iL~~~K~~w~ 862 (870)
+++|.|..+.
T Consensus 308 F~~as~~~~~ 317 (374)
T PRK01581 308 FHIAANSAYV 317 (374)
T ss_pred EEEEeCCccc
Confidence 7888776543
No 354
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.91 E-value=0.026 Score=65.62 Aligned_cols=111 Identities=20% Similarity=0.320 Sum_probs=62.6
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHH----HhhCccceeccccccccCC--CCccchhhhh--
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPII----YERGLFGIYHDWCESFSTY--PRSYDLLHAD-- 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i----~eRGlig~~h~wce~f~ty--PrtyDllHa~-- 790 (870)
..|||||||.||++.+|.+. .- .|+-+|.. ..+..+ -..|+- .+.-.|.....+ +.+||+|-+|
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcCC
Confidence 45999999999988777642 11 34445544 444333 234552 122222222222 3679997643
Q ss_pred ----cccccc-----c-CCcC-------hhhHHHhhhhcccCCcEEEEec----ChhhHHHHHHHHHc
Q 002884 791 ----HLFSQL-----K-NRCK-------LVPVMAEVDRIVRPGGKLIVRD----EPSAVTEVENFLKS 837 (870)
Q Consensus 791 ----~lfS~~-----~-~rc~-------~~~vl~EmDRILRPgG~~iird----~~~~~~~~~~~~~~ 837 (870)
|+|... . ..-. -..+|-++-|+|||||.+|+.. +.+-...|+.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 333211 0 0011 1258999999999999999984 23334556666654
No 355
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.90 E-value=0.018 Score=66.70 Aligned_cols=110 Identities=20% Similarity=0.344 Sum_probs=65.1
Q ss_pred cccccccccchhHHhhhcCC---CeEEEEeccCCCC-CChhHHHhh----Cc--cceec-cccccccCC-CCccchhhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSP-DTLPIIYER----GL--FGIYH-DWCESFSTY-PRSYDLLHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~-~tl~~i~eR----Gl--ig~~h-~wce~f~ty-PrtyDllHa~ 790 (870)
..||||+||.||.+.+|+.. +- .|+.+|.. ..|..+.++ |+ +-+++ |.. .+..+ +.+||+|-+|
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEEC
Confidence 45999999999998877653 22 34555554 555554333 54 22333 333 23323 4789998664
Q ss_pred cccccccC-C--------c----------ChhhHHHhhhhcccCCcEEEEe----cChhhHHHHHHHHH
Q 002884 791 HLFSQLKN-R--------C----------KLVPVMAEVDRIVRPGGKLIVR----DEPSAVTEVENFLK 836 (870)
Q Consensus 791 ~lfS~~~~-r--------c----------~~~~vl~EmDRILRPgG~~iir----d~~~~~~~~~~~~~ 836 (870)
---|...- | - .-..+|.+.-++|||||.+++. .+.+....|+.++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 33332210 0 0 1135788999999999999998 33444455555554
No 356
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=0.007 Score=61.02 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=40.1
Q ss_pred ccCCCCCCceeEEEeccccccccc-ChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 523 KRLQFPRNVFDLVHCARCRVPWHI-DGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 523 e~LPfpd~SFDlV~Ss~~alhw~~-D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
...+|.++|.|+|++.+..-|... ....++++++|+|||||+|-++++.+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 567899999999999875444433 34689999999999999999995543
No 357
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.86 E-value=0.16 Score=58.30 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=45.0
Q ss_pred CCEEEEECCCCchhHHHHhc-------------------CCEEEEeCChhhHHHHHHHHHHH-------------cCCCc
Q 002884 468 TRVSLDVGCGVASFGGYLFE-------------------RDVLTMSFAPKDEHDAQIQFALE-------------RGIPA 515 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~-------------------r~VtgVDiSp~ml~~A~vq~A~e-------------rgl~~ 515 (870)
..+|+|+|||+|..+..+.. ..|..-|+-.++..........- .+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~- 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR- 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC-
Confidence 56899999999966544321 14555577666654433222110 1111
Q ss_pred EEEEcC---c-ccCCCCCCceeEEEeccccccccc
Q 002884 516 ISAVMG---T-KRLQFPRNVFDLVHCARCRVPWHI 546 (870)
Q Consensus 516 ~~~v~d---a-e~LPfpd~SFDlV~Ss~~alhw~~ 546 (870)
..++.+ . ..--||.++.+++||+.+ +||..
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 133333 1 222389999999999865 99974
No 358
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=94.84 E-value=0.021 Score=57.10 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=40.4
Q ss_pred cceeccccccccCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 767 FGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 767 ig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+..++.-++.++.-+.+||+|=+..++.... +...+|-||.|+|||||.|+|.|-
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4555556777643347999987755554443 566799999999999999998864
No 359
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.82 E-value=0.19 Score=52.68 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHH-------HHHHHHHHHcCCCcEEEEcCc-ccCCCCCCc
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEH-------DAQIQFALERGIPAISAVMGT-KRLQFPRNV 531 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~-------~A~vq~A~ergl~~~~~v~da-e~LPfpd~S 531 (870)
.+++.+|+|+=-|.|.|++.|... .|++. .|..+. ......+++....+...+... ..++ +...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~--~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY--VPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEe--cchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 357899999999999999988764 34433 333221 111112222222222111111 2222 2333
Q ss_pred eeEEEe--------cccccccccChHHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHH
Q 002884 532 FDLVHC--------ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMD 603 (870)
Q Consensus 532 FDlV~S--------s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~ 603 (870)
.|+++. +. .+| ......+..+++++|||||++++.++-....... .. ....+.+.... ...
T Consensus 123 ~d~~~~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~-~d-----t~~~~ri~~a~---V~a 191 (238)
T COG4798 123 LDLVPTAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL-SD-----TITLHRIDPAV---VIA 191 (238)
T ss_pred ccccccchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh-hh-----hhhhcccChHH---HHH
Confidence 444443 22 122 2234789999999999999999985433221111 00 01122222222 355
Q ss_pred HHhhccceEEE
Q 002884 604 KLNSAGFAIYR 614 (870)
Q Consensus 604 ~L~daGfaI~r 614 (870)
.+..+||.+-.
T Consensus 192 ~veaaGFkl~a 202 (238)
T COG4798 192 EVEAAGFKLEA 202 (238)
T ss_pred HHHhhcceeee
Confidence 67788988766
No 360
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.80 E-value=0.27 Score=53.81 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=59.5
Q ss_pred HHHHHHhhhhhcCCCCCEEEEECCCCch--hHHHHh-----cCCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC
Q 002884 453 DFIQQAVPKIAWGKYTRVSLDVGCGVAS--FGGYLF-----ERDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL 525 (870)
Q Consensus 453 d~L~~~Lp~i~~g~~~~~VLDIGCGtG~--~a~~La-----~r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L 525 (870)
.||.+.+..+......+..||||||--. ....++ +.+|+-+|..|.-+..++.-...... ....++.++.+-
T Consensus 54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~ 132 (267)
T PF04672_consen 54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-
T ss_pred HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCC
Confidence 4455544443333257899999999642 233332 34899999999866655532222111 013344332111
Q ss_pred C-----------C--CCCceeEEEecccccccccC---hHHHHHHHHhhcCCCcEEEEEECCCcCchh
Q 002884 526 Q-----------F--PRNVFDLVHCARCRVPWHID---GGKLLLELNRVLRPGGYFVWSATPVYQKLG 577 (870)
Q Consensus 526 P-----------f--pd~SFDlV~Ss~~alhw~~D---~~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~ 577 (870)
| + .+..+=++++ ..+||..| +..++..++..|.||.+|+++ ....+..+
T Consensus 133 p~~iL~~p~~~~~lD~~rPVavll~--~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is-h~t~d~~p 197 (267)
T PF04672_consen 133 PEAILAHPEVRGLLDFDRPVAVLLV--AVLHFVPDDDDPAGIVARLRDALAPGSYLAIS-HATDDGAP 197 (267)
T ss_dssp HHHHHCSHHHHCC--TTS--EEEEC--T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE-EEB-TTSH
T ss_pred HHHHhcCHHHHhcCCCCCCeeeeee--eeeccCCCccCHHHHHHHHHHhCCCCceEEEE-ecCCCCCH
Confidence 1 1 1233334444 45888755 489999999999999999999 33333333
No 361
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.18 Score=54.23 Aligned_cols=113 Identities=20% Similarity=0.265 Sum_probs=74.6
Q ss_pred cccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC
Q 002884 445 IHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG 521 (870)
Q Consensus 445 ~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d 521 (870)
++|+..+...|... ....+++++||||+.||.|+..|+++ .|+++|+.-..++.-. + .-+.+...-.
T Consensus 61 SRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R-~d~rV~~~E~ 130 (245)
T COG1189 61 SRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----R-NDPRVIVLER 130 (245)
T ss_pred ccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----h-cCCcEEEEec
Confidence 45555555444433 23346899999999999999999876 8999999887554432 1 2222222222
Q ss_pred --cccCC---CCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEECCC
Q 002884 522 --TKRLQ---FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 522 --ae~LP---fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
...+. |. +..|+|+|-.+ |. .+..+|-.+..+|+|+|.+++-.-|-
T Consensus 131 tN~r~l~~~~~~-~~~d~~v~DvS---FI-SL~~iLp~l~~l~~~~~~~v~LvKPQ 181 (245)
T COG1189 131 TNVRYLTPEDFT-EKPDLIVIDVS---FI-SLKLILPALLLLLKDGGDLVLLVKPQ 181 (245)
T ss_pred CChhhCCHHHcc-cCCCeEEEEee---hh-hHHHHHHHHHHhcCCCceEEEEecch
Confidence 22221 22 26789998632 32 47889999999999999998765443
No 362
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.65 E-value=0.017 Score=64.71 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=50.0
Q ss_pred cccccccccchhHHhhhcCC-C--eEEEEeccCCCC-CChhHH----HhhCcc--ceec-cccccccCCCCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDL-Q--VWVMNVVNVNSP-DTLPII----YERGLF--GIYH-DWCESFSTYPRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~--vwvmNvvp~~~~-~tl~~i----~eRGli--g~~h-~wce~f~tyPrtyDllHa~~ 791 (870)
..|||+|||+|.+++.|.+. + -. |+-++.. ..+..+ ...|+- -+++ |..+. ......||+|.+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~---VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~-~~~~~~fD~Ii~~- 156 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG-VPEFAPYDVIFVT- 156 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc-ccccCCccEEEEC-
Confidence 35999999999999988753 1 11 2223332 333332 234542 2222 22222 1122579998873
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+.+..+...+-|+|+|||.+++-.
T Consensus 157 --------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 --------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 223334556778999999988853
No 363
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.59 E-value=0.15 Score=55.06 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCcEE-EEcCcccCCCCC---CceeEEEeccc
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPAIS-AVMGTKRLQFPR---NVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~-~v~dae~LPfpd---~SFDlV~Ss~~ 540 (870)
++..|||||+|.|.++..|.+. +|+++++++.+.......+. ..+... ...|...+.++. +....|+++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N-- 104 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLLKNQPLLVVGN-- 104 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHCSSSEEEEEEE--
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhhcCCceEEEEE--
Confidence 6789999999999999999875 89999999986544332221 123333 344455555443 445677776
Q ss_pred ccccccChHHHHHHHHhhcCC---CcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRP---GGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKP---GG~Lv~S 568 (870)
+++. -...++..+...-+. ..+|++.
T Consensus 105 -lPy~-is~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 105 -LPYN-ISSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp -ETGT-GHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred -eccc-chHHHHHHHhhcccccccceEEEEe
Confidence 5552 235666666664444 3444443
No 364
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.53 E-value=0.028 Score=60.05 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=74.5
Q ss_pred ccccccccchhHHhhhcCCC-eEEEEeccCCC-----CCChhHHHhhCc--cceeccccccccCC--CC-ccchhhhhcc
Q 002884 724 NVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNS-----PDTLPIIYERGL--FGIYHDWCESFSTY--PR-SYDLLHADHL 792 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~-----~~tl~~i~eRGl--ig~~h~wce~f~ty--Pr-tyDllHa~~l 792 (870)
.+|++|||.|.|=.+|+..+ =+ |++-++- ..-+..|-+.|| +.++..=+.-+..| |. +.|-|+- .
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 58999999999999998662 11 3333332 256777889999 78887655555555 44 8998876 5
Q ss_pred ccc-------ccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHH-HHHHHHc
Q 002884 793 FSQ-------LKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTE-VENFLKS 837 (870)
Q Consensus 793 fS~-------~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~-~~~~~~~ 837 (870)
|.. .+.|=--...|-++.|+|+|||.|.+. |...+.+. +...+..
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 552 123323347889999999999999987 55555555 4444433
No 365
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.46 E-value=0.26 Score=52.05 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC----CCCceeEEEe
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF----PRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf----pd~SFDlV~S 537 (870)
+++.+||=||+.+|.....+.+- .+.++++|+.+...-. ..|.+| ++++-+..+.+.|. --+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence 46889999999999877777652 6999999998776543 566655 34455555545552 2356999998
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
--+ -.....-+...+...||+||+++++
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcccCCeEEEE
Confidence 521 1233367788899999999988876
No 366
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.43 E-value=0.032 Score=64.12 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=70.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH---Hh-hCc----cceec-cccccccCC---CCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII---YE-RGL----FGIYH-DWCESFSTY---PRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i---~e-RGl----ig~~h-~wce~f~ty---PrtyDllHa 789 (870)
++|||++||+|+|+-+++..+. -.|+-+|.. ..+..+ ++ -|+ +-+++ |..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5699999999999866444442 133444543 333332 22 244 22333 444333333 258999877
Q ss_pred hccc-cccc-----CCcChhhHHHhhhhcccCCcEEEEecC------hhhHHHHHHHHHcCCceEEEe
Q 002884 790 DHLF-SQLK-----NRCKLVPVMAEVDRIVRPGGKLIVRDE------PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 790 ~~lf-S~~~-----~rc~~~~vl~EmDRILRPgG~~iird~------~~~~~~~~~~~~~l~W~~~~~ 845 (870)
|--+ +..+ ....+.+++.-.-++|+|||++++... ....+.+...+..-..++++.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6332 1111 112455667777899999999998532 345566666777766676654
No 367
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=94.30 E-value=0.045 Score=56.75 Aligned_cols=117 Identities=15% Similarity=0.270 Sum_probs=75.8
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CC---h-hHHHhhCccc---eec-cccccccCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DT---L-PIIYERGLFG---IYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~t---l-~~i~eRGlig---~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
+|||+|||-|.+=..|++.+.-- -++-+|=. .. - .++-.+|+.- ... |.-.+ ...+.-|||||--|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999999999876310 02233321 11 1 2334455542 222 44444 44467899998888776
Q ss_pred ccc-----CCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceE
Q 002884 795 QLK-----NRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 795 ~~~-----~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~ 842 (870)
... ....+..++-=++++|+|||.|+|+.-.-..++|.+.+..-..+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEY 200 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEE
Confidence 432 112335577788999999999999987777778777776665444
No 368
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.29 E-value=0.23 Score=55.29 Aligned_cols=104 Identities=18% Similarity=0.294 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHhhhhhcC-CCCCEEEEECCCCchhHHHH----hcCCEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEc
Q 002884 447 GALHYIDFIQQAVPKIAWG-KYTRVSLDVGCGVASFGGYL----FERDVLTMSFAPKDEHDAQIQFALERGIP-AISAVM 520 (870)
Q Consensus 447 gA~~Yid~L~~~Lp~i~~g-~~~~~VLDIGCGtG~~a~~L----a~r~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~ 520 (870)
+...|+..|.+++...... ...-++||||+|...+-..| ...+++|.|+++..+..|+....+..++. .+..+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 3456888888877653221 12468999999998543333 34499999999999999986665552444 222222
Q ss_pred --Ccc----cCCCCCCceeEEEecccccccccChHHHHH
Q 002884 521 --GTK----RLQFPRNVFDLVHCARCRVPWHIDGGKLLL 553 (870)
Q Consensus 521 --dae----~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~ 553 (870)
... .+-.+.+.||+.+|+. +|+.....+..
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNP---PFy~s~~e~~~ 196 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNP---PFYSSQEEAEA 196 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE--------SS------
T ss_pred cCCccccchhhhcccceeeEEecCC---ccccChhhhcc
Confidence 111 1223356899999985 55555444433
No 369
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.23 E-value=0.038 Score=59.35 Aligned_cols=96 Identities=19% Similarity=0.353 Sum_probs=65.7
Q ss_pred ccccccccchhHHhhhcCC----CeEEEEeccCC-CCCChhHHHhhC------ccceeccccccccCCC---Cccchhhh
Q 002884 724 NVMDMRAVYGGFAAALKDL----QVWVMNVVNVN-SPDTLPIIYERG------LFGIYHDWCESFSTYP---RSYDLLHA 789 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~-~~~tl~~i~eRG------lig~~h~wce~f~tyP---rtyDllHa 789 (870)
.||.+|||.|.--==|++. ++-|| .-| +|+.+.++-++- .-...+|.|..=..+| .+.|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 6899999999654333322 12222 222 223333333322 4566778777655554 89999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
..+||.... -.+..+|-.+-|+|+|||.+++||
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 999998764 457789999999999999999997
No 370
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=94.22 E-value=0.029 Score=59.14 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=60.7
Q ss_pred ccccccccchhHHhhhcCCCe-EEEEeccCCCCCChhHHHhhC-------ccceeccccccccCCC-Cccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSPDTLPIIYERG-------LFGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~~tl~~i~eRG-------lig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
.||.+|||+|.-=-++-..+. -|.-+=|. +++-.++-.+= +--..|.-.|.++.-+ -+||.|-+--++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn--~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL- 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPN--EKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL- 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCc--HHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-
Confidence 479999999965555544433 33333332 23333332221 2335667778888776 799998773322
Q ss_pred cccCCcC---hhhHHHhhhhcccCCcEEEEecCh
Q 002884 795 QLKNRCK---LVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 795 ~~~~rc~---~~~vl~EmDRILRPgG~~iird~~ 825 (870)
|+ ...+|-|+-|||||||.+||-..+
T Consensus 156 -----CSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 156 -----CSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred -----eccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44 447999999999999999998543
No 371
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.19 E-value=0.039 Score=61.58 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=57.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCcc------cee-ccc-cccccCCCCccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLF------GIY-HDW-CESFSTYPRSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGli------g~~-h~w-ce~f~tyPrtyDllHa~~lf 793 (870)
..|||+|||.|.++..|.+.+. +|+-+|-. ++|.+..+|.-- +.. ..| +..+...+.+||+|=|.+++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999998864 67777765 788777766310 011 111 12223346899999887777
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEE
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLI 820 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~i 820 (870)
-++... .+..++..+.++ .+||.+|
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 654331 223455555554 4555544
No 372
>PLN03075 nicotianamine synthase; Provisional
Probab=94.17 E-value=0.059 Score=59.75 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=73.7
Q ss_pred cccccccccccchhHHhhhcC----CCeEEEEeccCCCC--CChhHHH-hhCccc---ee-ccccccccCCCCccchhhh
Q 002884 721 NVRNVMDMRAVYGGFAAALKD----LQVWVMNVVNVNSP--DTLPIIY-ERGLFG---IY-HDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~----~~vwvmNvvp~~~~--~tl~~i~-eRGlig---~~-h~wce~f~tyPrtyDllHa 789 (870)
.-+.|+|+|||-|++.+.+.- .+..+.|+=--... .....+. +.||-. +. +|..+. ......||+|=+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCEEEE
Confidence 457899999998877555432 12233333211111 1112221 244422 21 244332 111268999888
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecChhh---HHH-H-HHHHHcCCceEEEeecCCCc---eEEEEEeCC
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA---VTE-V-ENFLKSLHWEILFAFSKDQE---GVLSAQKGN 860 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~---~~~-~-~~~~~~l~W~~~~~~~~~~e---~iL~~~K~~ 860 (870)
.-|.-. ..-....+|..+-|.|||||++++|---.. +-. + ...++ .|++....+-.++ -+++++|.-
T Consensus 202 ~ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 AALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred eccccc--ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEEEEeec
Confidence 622111 223556899999999999999999952111 100 1 11122 8888777665543 489999964
No 373
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.16 E-value=0.45 Score=52.25 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=65.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCC-cE-EEEcCcccCCC--CCCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIP-AI-SAVMGTKRLQF--PRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~-~~-~~v~dae~LPf--pd~SFDlV 535 (870)
..++.+||+-|.|+|+++.++++. +++..|+-..-...|...+ ++.|++ ++ +.+.|.....| .+..+|.|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeecccCCccccccccceE
Confidence 467999999999999999888874 8999999665444444333 334554 22 33334444444 36789999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+.-. +.+..++--++.+||-+|.-+++
T Consensus 182 FLDl------PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 182 FLDL------PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred EEcC------CChhhhhhhhHHHhhhcCceEEe
Confidence 8742 35567777777899998854444
No 374
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.86 E-value=0.18 Score=56.12 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCC-Cc-------E---
Q 002884 450 HYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGI-PA-------I--- 516 (870)
Q Consensus 450 ~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl-~~-------~--- 516 (870)
..++.|..++|.....+...+||--|||.|+++..|+.. .+-|-++|-.|+--.. ++..... ++ +
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~--FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS--FILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH--HHHHhhccCCcEEEEeeeecc
Confidence 356667777766544455678999999999999999865 6666688877764332 3331100 00 0
Q ss_pred -----------------------------EEEc-Cc--ccCC--CCCCceeEEEecccccccccChHHHHHHHHhhcCCC
Q 002884 517 -----------------------------SAVM-GT--KRLQ--FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPG 562 (870)
Q Consensus 517 -----------------------------~~v~-da--e~LP--fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPG 562 (870)
+.++ |+ +-.+ -..++||+|+..+ .+.-..+.-.+|..|..+||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHhccCC
Confidence 0000 00 0001 1124699998753 2433344578899999999999
Q ss_pred cEEEEEECCCcC
Q 002884 563 GYFVWSATPVYQ 574 (870)
Q Consensus 563 G~Lv~S~~p~~~ 574 (870)
|+++=.+|..|.
T Consensus 290 GvWiNlGPLlYH 301 (369)
T KOG2798|consen 290 GVWINLGPLLYH 301 (369)
T ss_pred cEEEeccceeee
Confidence 999966555443
No 375
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.053 Score=55.22 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=62.0
Q ss_pred CCCEEEEECCCCchhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcC----CCcEEE-EcC--cccCCCCCCceeE
Q 002884 467 YTRVSLDVGCGVASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERG----IPAISA-VMG--TKRLQFPRNVFDL 534 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~erg----l~~~~~-v~d--ae~LPfpd~SFDl 534 (870)
.+++||++|.|--.++..|.. ..|...|-....+... +....++ +..... ... ..........||+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv--~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNV--EKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHH--HHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 367899999996555554443 2677777766544332 2222222 111100 000 1112233568999
Q ss_pred EEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
|+|+.| +.+.+....++..|.+.|+|.|.-++..|
T Consensus 107 IlaADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 107 ILAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 999998 44555568899999999999999887744
No 376
>PLN02366 spermidine synthase
Probab=93.63 E-value=0.035 Score=61.78 Aligned_cols=100 Identities=17% Similarity=0.273 Sum_probs=57.2
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCCCChhHHHh------hCc----cceeccccccc-cCC-CCccchh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSPDTLPIIYE------RGL----FGIYHDWCESF-STY-PRSYDLL 787 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~~tl~~i~e------RGl----ig~~h~wce~f-~ty-PrtyDll 787 (870)
.-++||++|+|.|+.+..|++.+ |.-+-+|.+|.. .+.+..+ .|+ +-++++-+-.| ... ++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~-Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM-VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 46889999999999999998874 533334444431 1111111 121 23333222212 233 4789998
Q ss_pred hhhcccccccCCcC--hhhHHHhhhhcccCCcEEEEe
Q 002884 788 HADHLFSQLKNRCK--LVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 788 Ha~~lfS~~~~rc~--~~~vl~EmDRILRPgG~~iir 822 (870)
-++. +........ -...+..+-|+|+|||.+++.
T Consensus 170 i~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 7743 221111000 125678899999999999874
No 377
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=93.63 E-value=0.13 Score=54.72 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=87.1
Q ss_pred cccccccccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCc-----cceeccccccccCCCCccchhhh
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGL-----FGIYHDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGl-----ig~~h~wce~f~tyPrtyDllHa 789 (870)
|.-...|+|.|+|||.|---+.|..+ |. --|.-+|++ .+|.-+..|+. .|-++.||-. +..|||-|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~~dllfa 98 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QPTDLLFA 98 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cccchhhh
Confidence 44456899999999999999999877 44 224566776 89999999984 5778889864 56899999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecC--hh--hHHHHHHHHHcCCceEEE
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE--PS--AVTEVENFLKSLHWEILF 844 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~--~~--~~~~~~~~~~~l~W~~~~ 844 (870)
+-+|--+..-- .+|--+=--|+|||++-+.-+ .+ ...-|+.+++..-|...+
T Consensus 99 NAvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 99 NAVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQEL 154 (257)
T ss_pred hhhhhhccccH---HHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhh
Confidence 99998664322 234444446899999999843 32 257788888888887654
No 378
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=93.59 E-value=0.038 Score=60.06 Aligned_cols=93 Identities=14% Similarity=0.313 Sum_probs=64.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh---------Cc---cceeccccccccCCCCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER---------GL---FGIYHDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR---------Gl---ig~~h~wce~f~tyPrtyDllHa 789 (870)
|+|||+|||.|-....|+..+- +|+-+|.. ..+.++.+. ++ +-..|.--|.+-.. ||.|-|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~---fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGK---FDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccc---cceeee
Confidence 6699999999999999999885 66777765 455444433 21 21223222332222 999988
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
.-++-++++ +..++-=+=+.|+|||.++|++-
T Consensus 165 sevleHV~d---p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 165 SEVLEHVKD---PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHHhC---HHHHHHHHHHHhCCCCceEeeeh
Confidence 777776663 56678888899999999999963
No 379
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.52 E-value=0.15 Score=49.11 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred EEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCC
Q 002884 470 VSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIP 514 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~ 514 (870)
++||||||.|.++..++.. +|+++|.++.+...++... ...+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~-~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV-KLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH-HHcCCC
Confidence 4899999999998887754 5999999999887766443 333443
No 380
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.51 E-value=0.037 Score=50.96 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=37.5
Q ss_pred EEECCCCchhHHHHhcC-------CEEEEeCChhhHHHHHHHHHHHcCCC-cEEEEcCc--ccCC-CCCCceeEEEeccc
Q 002884 472 LDVGCGVASFGGYLFER-------DVLTMSFAPKDEHDAQIQFALERGIP-AISAVMGT--KRLQ-FPRNVFDLVHCARC 540 (870)
Q Consensus 472 LDIGCGtG~~a~~La~r-------~VtgVDiSp~ml~~A~vq~A~ergl~-~~~~v~da--e~LP-fpd~SFDlV~Ss~~ 540 (870)
|+||+..|..+..|++. .++++|..+. ...++ +..++.++. .+.++.+. ..++ ++..+||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~-~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQ-EIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccc-hhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999877766652 5899999884 11111 223323332 34444442 2222 2357899999852
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-|-.......|..+.+.|+|||++++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 332234467888899999999999874
No 381
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.23 Score=55.99 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=61.5
Q ss_pred HHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc---Cccc
Q 002884 453 DFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM---GTKR 524 (870)
Q Consensus 453 d~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~---dae~ 524 (870)
+.++...+.+ ...+|||+|.|.|.-+.++-.. .++.++.+|. +...--..+..-......... ...+
T Consensus 103 ~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~dR 177 (484)
T COG5459 103 DELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTEDR 177 (484)
T ss_pred HHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchhc
Confidence 3344444443 3567999999998655444432 6677777774 322222222222111100111 1245
Q ss_pred CCCC-CCceeEEEecccccccccC--hHHHHHHHHhhcCCCcEEEEE
Q 002884 525 LQFP-RNVFDLVHCARCRVPWHID--GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 525 LPfp-d~SFDlV~Ss~~alhw~~D--~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++++ ...|++|+...-+++-... ....+..+..+|.|||.|++.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 5655 3568888765433332211 134788899999999999998
No 382
>PRK03612 spermidine synthase; Provisional
Probab=93.34 E-value=0.094 Score=62.31 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=68.9
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhh-------------Cccceeccccccc-cCCCCccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYER-------------GLFGIYHDWCESF-STYPRSYD 785 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eR-------------Glig~~h~wce~f-~tyPrtyD 785 (870)
+-++|||+|+|.|+.+..+.+.+- |-.|+-++-. ..+.++.+. .-+-+++.-...+ ...++.||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 457899999999999998887642 1233333332 344444331 1122333222222 23468999
Q ss_pred hhhhhcccccccCC-cC--hhhHHHhhhhcccCCcEEEEec-----ChhhHHHHHHHHHcCCceE
Q 002884 786 LLHADHLFSQLKNR-CK--LVPVMAEVDRIVRPGGKLIVRD-----EPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 786 llHa~~lfS~~~~r-c~--~~~vl~EmDRILRPgG~~iird-----~~~~~~~~~~~~~~l~W~~ 842 (870)
+|-+|- ....... .. -...+-.+-|+|+|||.+++.. ..+....+...+++....+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 998762 1111110 01 1246778899999999999853 2344556666677665543
No 383
>PHA03411 putative methyltransferase; Provisional
Probab=93.32 E-value=0.054 Score=59.51 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=69.9
Q ss_pred cccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC--Cccchhhhhccccccc-
Q 002884 723 RNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP--RSYDLLHADHLFSQLK- 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP--rtyDllHa~~lfS~~~- 797 (870)
..|||+|||.|.|+.++..+ +- .+|+-+|.. ..+..+.++ +. -+.-.+..+..++ ++||+|=++-=|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~-~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LP-EAEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-Cc-CCEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 46999999999998888654 11 244555544 566655543 21 1122333344443 7899987766665321
Q ss_pred ----C--C---------c-ChhhHHHhhhhcccCCcEEEEecCh--hh-----HHHHHHHHHcCCceE
Q 002884 798 ----N--R---------C-KLVPVMAEVDRIVRPGGKLIVRDEP--SA-----VTEVENFLKSLHWEI 842 (870)
Q Consensus 798 ----~--r---------c-~~~~vl~EmDRILRPgG~~iird~~--~~-----~~~~~~~~~~l~W~~ 842 (870)
. + | .+...|..+-++|.|+|.+++.=.. .+ ..+-+.+++.-....
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 1 1 1 2467889999999999988876211 11 355666666555543
No 384
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.26 E-value=0.3 Score=55.23 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=62.9
Q ss_pred CCCCEEEEECCC-CchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCG-VASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCG-tG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
+++.+|+=+|+| .|..+..+++ ++|+++|.++. ..++|++.|........+...+.--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC--
Confidence 568899999988 2356666665 49999999997 445667776543322222222221122499998741
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. ...+....+.||+||.+++.+.+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 57788899999999999998644
No 385
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=93.12 E-value=0.11 Score=55.27 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=81.9
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCC-CChhHHHhhCccc-eec-cccccccCCCCccchhhhhcccc--
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSP-DTLPIIYERGLFG-IYH-DWCESFSTYPRSYDLLHADHLFS-- 794 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~-~tl~~i~eRGlig-~~h-~wce~f~tyPrtyDllHa~~lfS-- 794 (870)
.-+-|||+|||+|--|+.|.+.+ +|| =+|.+ .+|.++.+|-+-| +++ |..|.+++=|-|||-+-+.+-.-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 34569999999999999999986 465 35654 8999999977764 334 89999888899999743322111
Q ss_pred -cccCCcChh-----hHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceE
Q 002884 795 -QLKNRCKLV-----PVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEI 842 (870)
Q Consensus 795 -~~~~rc~~~-----~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~ 842 (870)
+-.+.|... ..+--+..+|.+|+..++.=-.+....++.|...-+|.-
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aG 179 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAG 179 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhc
Confidence 011223322 335558899999999999966666666666666666654
No 386
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.88 E-value=2.5 Score=45.88 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=56.0
Q ss_pred CCCEEEEECCCCc-hhHHHHhc--CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC---CCceeEEEeccc
Q 002884 467 YTRVSLDVGCGVA-SFGGYLFE--RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP---RNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGtG-~~a~~La~--r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp---d~SFDlV~Ss~~ 540 (870)
.+++||-||=..- +++..|.. ++|+.+|++...+..-. +.|.+.|++......+ .+-|+| -+.||++++..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~-~~a~~~gl~i~~~~~D-lR~~LP~~~~~~fD~f~TDP- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFIN-RVAEEEGLPIEAVHYD-LRDPLPEELRGKFDVFFTDP- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHH-HHHHHHT--EEEE----TTS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHH-HHHHHcCCceEEEEec-ccccCCHHHhcCCCEEEeCC-
Confidence 4789999997665 35555543 39999999999887655 6888889985555544 344544 47899999974
Q ss_pred ccccccCh-HHHHHHHHhhcCCCc-EEEEE
Q 002884 541 RVPWHIDG-GKLLLELNRVLRPGG-YFVWS 568 (870)
Q Consensus 541 alhw~~D~-~~vL~Ei~RVLKPGG-~Lv~S 568 (870)
+|.... ..++......||.-| ..+++
T Consensus 121 --PyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 --PYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred --CCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 454433 567888888998766 44444
No 387
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.77 E-value=0.47 Score=51.05 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=74.1
Q ss_pred CeeecCCCCcc-ccccHHHHHHHHHHHhhhhhcC--CCCCEEEEECCCCchh----HHHHhcCCEEEEeCChhhHHHHHH
Q 002884 433 EIITFPGGGTQ-FIHGALHYIDFIQQAVPKIAWG--KYTRVSLDVGCGVASF----GGYLFERDVLTMSFAPKDEHDAQI 505 (870)
Q Consensus 433 e~~~FPgggt~-F~~gA~~Yid~L~~~Lp~i~~g--~~~~~VLDIGCGtG~~----a~~La~r~VtgVDiSp~ml~~A~v 505 (870)
.+|.||.|--. -..+...|+.+|++++...... ++..++||||.|.--+ +......+.+|.|+++..+..|+.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 45777776432 2356678999999988654322 2456899999886532 222223389999999998888876
Q ss_pred HHHHHcCCCcE-E-EEcCccc--CC---CCCCceeEEEecccccccccChHHHHHHHHhhc
Q 002884 506 QFALERGIPAI-S-AVMGTKR--LQ---FPRNVFDLVHCARCRVPWHIDGGKLLLELNRVL 559 (870)
Q Consensus 506 q~A~ergl~~~-~-~v~dae~--LP---fpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVL 559 (870)
-....-++... . ....... ++ -..+.||++.|+. +||.....+..--.|-+
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNP---PFh~s~~da~~gsqrk~ 178 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNP---PFHDSAADARAGSQRKR 178 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCC---CcchhHHHHHhcccCCc
Confidence 55554344321 1 1111211 11 2257899999985 45555554444433433
No 388
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.66 E-value=1 Score=52.10 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCCCchhH---HHHh-cC-CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-CcccCC---CCCCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFG---GYLF-ER-DVLTMSFAPKDEHDAQIQFALERGIPAISAVM-GTKRLQ---FPRNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a---~~La-~r-~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~-dae~LP---fpd~SFDlV 535 (870)
..++.+|||+.+..|.=+ +.|. .. -|++.|.+..-+..-. ..+.+.|+.+...+. +...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~-~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLK-ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHH-HHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 467899999999999533 3333 33 7888998877554433 556677877655544 344444 555 89999
Q ss_pred E----ecccccccccC-----------------hHHHHHHHHhhcCCCcEEEEEECCCc
Q 002884 536 H----CARCRVPWHID-----------------GGKLLLELNRVLRPGGYFVWSATPVY 573 (870)
Q Consensus 536 ~----Ss~~alhw~~D-----------------~~~vL~Ei~RVLKPGG~Lv~S~~p~~ 573 (870)
. |+...+.+-+. ...+|..+..+++|||+|+.|+..+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 7 33211222111 13678888899999999999965443
No 389
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.38 E-value=0.63 Score=49.07 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=57.9
Q ss_pred EEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCC-CcEEEEcCcccCCCCCCc-eeEEEeccccccc
Q 002884 471 SLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGI-PAISAVMGTKRLQFPRNV-FDLVHCARCRVPW 544 (870)
Q Consensus 471 VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl-~~~~~v~dae~LPfpd~S-FDlV~Ss~~alhw 544 (870)
|.||||--|.+..+|.+. .++++|+++.-+..|+...+. .|+ ..+....++.--+++.+. .|.|+.+. +.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG--MGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG--MGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--GGG---EEEEEE--E-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCCCCCCCEEEEec--CCH
Confidence 689999999999999886 799999999999988865554 453 344444443222344433 78887653 221
Q ss_pred ccChHHHHHHHHhhcCCCcEEEEE
Q 002884 545 HIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 545 ~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.-....|......++....|++.
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEe
Confidence 11245666666777777788887
No 390
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.22 E-value=0.68 Score=46.23 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=53.9
Q ss_pred CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-ccCC-C-CCCceeEEEecccccccccC-----h---HHHHHHHHh
Q 002884 489 DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KRLQ-F-PRNVFDLVHCARCRVPWHID-----G---GKLLLELNR 557 (870)
Q Consensus 489 ~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~LP-f-pd~SFDlV~Ss~~alhw~~D-----~---~~vL~Ei~R 557 (870)
+|+|.||-+..+...+.+.........+.++.+. +.+. + +.+.+|+|+.|+..++-.+. + -.+|..+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4899999998888777555443333345566553 4443 2 33589999998665553211 1 378999999
Q ss_pred hcCCCcEEEEEECCCcCch
Q 002884 558 VLRPGGYFVWSATPVYQKL 576 (870)
Q Consensus 558 VLKPGG~Lv~S~~p~~~tL 576 (870)
+|+|||++.+..-++...-
T Consensus 81 lL~~gG~i~iv~Y~GH~gG 99 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGG 99 (140)
T ss_dssp HEEEEEEEEEEE--STCHH
T ss_pred hhccCCEEEEEEeCCCCCC
Confidence 9999999999865555433
No 391
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=92.02 E-value=0.21 Score=52.71 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=84.1
Q ss_pred ccccccccchhHHhhhcCC-CeEEEEeccCCCC-CChhH----HHhhCcc----ceeccccccc-------cCCCCccch
Q 002884 724 NVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP-DTLPI----IYERGLF----GIYHDWCESF-------STYPRSYDL 786 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~-~tl~~----i~eRGli----g~~h~wce~f-------~tyPrtyDl 786 (870)
.||.+|+|+|--|+++... |- +---|.|-. +.+.- |.+.|+. .+.-|.+... ..++.+||+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 5999999999988888654 42 123466654 22222 4466753 2333444442 235689999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh---------------------------hhHHHHHHHHHcCC
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP---------------------------SAVTEVENFLKSLH 839 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~---------------------------~~~~~~~~~~~~l~ 839 (870)
|-|.+++-...-.| .+-++.+.-|+|+|||.|++=.+- --++.|..++.+-.
T Consensus 106 i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 87766664332222 356899999999999999987421 11577888888877
Q ss_pred ceEEEe-ecCCCceEEEEEe
Q 002884 840 WEILFA-FSKDQEGVLSAQK 858 (870)
Q Consensus 840 W~~~~~-~~~~~e~iL~~~K 858 (870)
+..... +=-....+||.+|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 776432 1123467888887
No 392
>PHA03412 putative methyltransferase; Provisional
Probab=91.92 E-value=0.097 Score=56.43 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred cccccccccchhHHhhhcCC----CeEEEEeccCCCC-CChhHHHhhCccceeccccccccCC--CCccchhhhhccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDL----QVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTY--PRSYDLLHADHLFSQ 795 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~----~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~ty--PrtyDllHa~~lfS~ 795 (870)
..|||+|||.|.|+.+++.+ +. .+|.-++-. ..+.++. +.+.. ++-++..|..+ +.+||+|=++==|-.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 36999999999999988653 21 245555543 4444443 23322 23233334333 468999866655542
Q ss_pred cc-----CC---cChh-hHHHhhhhcccCCcEEEEe
Q 002884 796 LK-----NR---CKLV-PVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~-----~r---c~~~-~vl~EmDRILRPgG~~iir 822 (870)
.. .| ..+. .++...-|+||||++ |+=
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 21 22 2333 366667789999887 443
No 393
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.53 E-value=2.5 Score=46.67 Aligned_cols=119 Identities=15% Similarity=0.249 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhhhhc--CCCCCEEEEECCCCchhHHHHhc------CCEEEEeCChhhHHHHHHHHHH-HcCCC-cEEE
Q 002884 449 LHYIDFIQQAVPKIAW--GKYTRVSLDVGCGVASFGGYLFE------RDVLTMSFAPKDEHDAQIQFAL-ERGIP-AISA 518 (870)
Q Consensus 449 ~~Yid~L~~~Lp~i~~--g~~~~~VLDIGCGtG~~a~~La~------r~VtgVDiSp~ml~~A~vq~A~-ergl~-~~~~ 518 (870)
..|...+...+..+.. +....+|+=||||.=-++..+.. ..|+++|+++.....++. ... ..++. .+.+
T Consensus 100 ~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~-lv~~~~~L~~~m~f 178 (276)
T PF03059_consen 100 PNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR-LVASDLGLSKRMSF 178 (276)
T ss_dssp HHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH-HHH---HH-SSEEE
T ss_pred HHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHhhcccccCCeEE
Confidence 3455554444332221 22346999999997655544432 258899999998777753 323 22222 2444
Q ss_pred EcC-cccCCCCCCceeEEEecccccccc-cChHHHHHHHHhhcCCCcEEEEEE
Q 002884 519 VMG-TKRLQFPRNVFDLVHCARCRVPWH-IDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 519 v~d-ae~LPfpd~SFDlV~Ss~~alhw~-~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.+ ....+..-..||+|+.+. ++.-. .+-..+|..+.+.++||..+++-.
T Consensus 179 ~~~d~~~~~~dl~~~DvV~lAa-lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 179 ITADVLDVTYDLKEYDVVFLAA-LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EES-GGGG-GG----SEEEE-T-T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EecchhccccccccCCEEEEhh-hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 443 344444446799999863 23322 245899999999999999999863
No 394
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.24 E-value=0.76 Score=54.36 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred CCEEEEECCCCchhHHHHhc------C--CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 468 TRVSLDVGCGVASFGGYLFE------R--DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~------r--~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
..+|+-+|+|.|-+....++ + ++++++-.|..+.--+...-..-+-...++-.|+..++-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 45788999999976544432 2 789999999865433221111112223344456677775568899999853
Q ss_pred cccccccC-h-HHHHHHHHhhcCCCcEEEEE
Q 002884 540 CRVPWHID-G-GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 540 ~alhw~~D-~-~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. -.|-.+ + +.+|..+-+.|||+|+.+=+
T Consensus 448 L-GSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 L-GSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred h-ccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 2 223222 3 89999999999999988843
No 395
>PLN02476 O-methyltransferase
Probab=91.14 E-value=0.18 Score=55.56 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=74.9
Q ss_pred ccccccccccccccchhHHhhhcC----CC-eEEEEeccCCCCCChhHHHhhCcc---ceec-cccccccCC-----CCc
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKD----LQ-VWVMNVVNVNSPDTLPIIYERGLF---GIYH-DWCESFSTY-----PRS 783 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~----~~-vwvmNvvp~~~~~tl~~i~eRGli---g~~h-~wce~f~ty-----Prt 783 (870)
.-..-++||++|+++|..+.+|+. .+ |+.+=.-|....-..+.+-.-|+- -+++ +-.+.+..+ +.+
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 334578999999999999888864 23 333222221111233344555653 2333 233333332 357
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh-------------h---hHHHHHHHHHcCCceEEEeec
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP-------------S---AVTEVENFLKSLHWEILFAFS 847 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~-------------~---~~~~~~~~~~~l~W~~~~~~~ 847 (870)
||+|=.|+= .-....++...-++|||||.+|+.+-. . +.+..+.+...=+++..+.
T Consensus 195 FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll-- 266 (278)
T PLN02476 195 YDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV-- 266 (278)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE--
Confidence 998655432 123456777778999999999887421 0 1222233444445665543
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
.-..++++++|.
T Consensus 267 PigDGl~i~~K~ 278 (278)
T PLN02476 267 PIGDGMTICRKR 278 (278)
T ss_pred EeCCeeEEEEEC
Confidence 224789999884
No 396
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=90.94 E-value=0.12 Score=52.65 Aligned_cols=98 Identities=23% Similarity=0.363 Sum_probs=52.6
Q ss_pred cccccccccccch--hHHhhhcCCCeEEEEeccCCCC---CChhHHHhh------C-ccceeccccccc--cCC-CCccc
Q 002884 721 NVRNVMDMRAVYG--GFAAALKDLQVWVMNVVNVNSP---DTLPIIYER------G-LFGIYHDWCESF--STY-PRSYD 785 (870)
Q Consensus 721 ~~RnvmDm~ag~G--gfaaaL~~~~vwvmNvvp~~~~---~tl~~i~eR------G-lig~~h~wce~f--~ty-PrtyD 785 (870)
.-++||.+|||.| |.+++... + ...|+-+|.+ ..+..+.++ + +-....+|.+.. ... ++.||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~--~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-G--AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhcc-C--CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3468999999998 55555551 1 1122223333 233334443 2 233445898854 222 47899
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE 824 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~ 824 (870)
+|.|..++=.. -..+.++-=+.++|.|+|.+|+..+
T Consensus 122 ~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99996665432 1345677778999999999888743
No 397
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=90.93 E-value=0.38 Score=51.83 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=81.8
Q ss_pred cccccccccchhHHhhhcCCCe-EEEEeccCCCCCChhHH----HhhCc----cceec-cccccccCCC-Cccch-hhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQV-WVMNVVNVNSPDTLPII----YERGL----FGIYH-DWCESFSTYP-RSYDL-LHAD 790 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~v-wvmNvvp~~~~~tl~~i----~eRGl----ig~~h-~wce~f~tyP-rtyDl-lHa~ 790 (870)
-+|||...|.|=+|..-.+++- -|..| .+| ||-|.++ +-||| |-+++ |--|...+|+ .+||. ||--
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekd-p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITV-EKD-PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEE-eeC-CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 3599999999999998888865 22221 111 1111110 22333 55566 5667778887 78998 6766
Q ss_pred cccccccCCcChhhHHHhhhhcccCCcEEEE-ec-------ChhhHHHHHHHHHcCCceEEEeecCCCceE-EEEEeC
Q 002884 791 HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIV-RD-------EPSAVTEVENFLKSLHWEILFAFSKDQEGV-LSAQKG 859 (870)
Q Consensus 791 ~lfS~~~~rc~~~~vl~EmDRILRPgG~~ii-rd-------~~~~~~~~~~~~~~l~W~~~~~~~~~~e~i-L~~~K~ 859 (870)
-=||+-..--+. ..--|+.|||||||-++= .. -.++...|..-+++....+... ..+.+ ++|+|+
T Consensus 214 PRfS~AgeLYse-efY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~---~~~~~gv~A~k~ 287 (287)
T COG2521 214 PRFSLAGELYSE-EFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK---VREALGVVAVKP 287 (287)
T ss_pred CccchhhhHhHH-HHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee---ehhccceEEecC
Confidence 666654432222 466799999999998763 22 2356778888888888875432 13444 677764
No 398
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=90.66 E-value=0.087 Score=55.42 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=77.1
Q ss_pred ccccccccccccccchhHHhhhcC----C-CeEEEEeccCCCCCChhHHHhhCc---cceec-cccccccCC-----CCc
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALKD----L-QVWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCESFSTY-----PRS 783 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~~----~-~vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce~f~ty-----Prt 783 (870)
...+-++||.+|+++|=-|.+|+. . .|+++-+-|....-....+..-|+ |-+++ +..+.+..+ +.+
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 345678999999988876666653 2 456655544333333444555676 44444 355554444 257
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh----------------hhHHHHHHHHHcCCceEEEeec
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP----------------SAVTEVENFLKSLHWEILFAFS 847 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~----------------~~~~~~~~~~~~l~W~~~~~~~ 847 (870)
||+|=.|+-= -....++..+-++|||||.+|+.+-. .+.+..+.+..-=+.+..+.
T Consensus 122 fD~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll-- 193 (205)
T PF01596_consen 122 FDFVFIDADK------RNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL-- 193 (205)
T ss_dssp EEEEEEESTG------GGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE--
T ss_pred eeEEEEcccc------cchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE--
Confidence 9997554421 23334666666999999999998532 11223333444345554442
Q ss_pred CCCceEEEEEeC
Q 002884 848 KDQEGVLSAQKG 859 (870)
Q Consensus 848 ~~~e~iL~~~K~ 859 (870)
.-.++|++++|+
T Consensus 194 pigdGl~l~~K~ 205 (205)
T PF01596_consen 194 PIGDGLTLARKR 205 (205)
T ss_dssp CSTTEEEEEEE-
T ss_pred EeCCeeEEEEEC
Confidence 345789999984
No 399
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=90.51 E-value=0.32 Score=50.86 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=57.9
Q ss_pred CEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHc----CCCcEEEEc-CcccCCCCCCceeEEEecccc
Q 002884 469 RVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALER----GIPAISAVM-GTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~er----gl~~~~~v~-dae~LPfpd~SFDlV~Ss~~a 541 (870)
..+.|+|+|+|.++...+.. +|++++.+|.-. +.|.+. |..+...+. ++....| ..-|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 68999999999776655543 899999999733 233332 444444444 4556666 457999995210
Q ss_pred ccc-ccChHHHHHHHHhhcCCCcEEE
Q 002884 542 VPW-HIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 542 lhw-~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
.-. ......++..+...||-+|.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 001 1223567777777888888776
No 400
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=90.36 E-value=0.3 Score=56.86 Aligned_cols=112 Identities=21% Similarity=0.330 Sum_probs=67.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccC--C-CCccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFST--Y-PRSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~t--y-PrtyDllHa~~ 791 (870)
..|||+|||.|.|+.+|+... ..|+-+|.. ..+..+.+ .|+ +-+++ |+-+.+.. + +.+||+|-++-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 359999999999999998775 355666655 55554443 244 23333 45443322 3 36788875421
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
.|..+..++.-+-+ |.|++.++++=+...+.+--..+..-.|++..
T Consensus 376 ------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~ 421 (443)
T PRK13168 376 ------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRLKR 421 (443)
T ss_pred ------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEEEE
Confidence 23334456655555 59999999995555544433344344687753
No 401
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=90.35 E-value=0.14 Score=51.45 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred ccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhC----ccceeccccccccCCC-Cccchhhhhccccc
Q 002884 722 VRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERG----LFGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 722 ~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRG----lig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
-..|||+|||.|.++..|+++. -.|+.++.. ..+..+.++- =+-+++.-...+. ++ ..||+|=++=-|..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYNI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCccc
Confidence 3469999999999999999874 245555544 4555554441 1334443223322 33 35777644332321
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
. .-.+.. +++.. .+.++|+|++..
T Consensus 90 ~--~~~i~~-~l~~~-~~~~~~~l~~q~ 113 (169)
T smart00650 90 S--TPILFK-LLEEP-PAFRDAVLMVQK 113 (169)
T ss_pred H--HHHHHH-HHhcC-CCcceEEEEEEH
Confidence 1 112222 33332 256999999985
No 402
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.23 E-value=0.78 Score=48.58 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCEEEEECCCCchhHHHHhcC----CEEEEeCChh
Q 002884 468 TRVSLDVGCGVASFGGYLFER----DVLTMSFAPK 498 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ 498 (870)
.-.+.|||||.|.+...|... -|+|++|--.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 357899999999988888764 7899887544
No 403
>PRK04148 hypothetical protein; Provisional
Probab=90.09 E-value=0.14 Score=50.58 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=62.8
Q ss_pred cccccccccchh-HHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCc
Q 002884 723 RNVMDMRAVYGG-FAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRC 800 (870)
Q Consensus 723 RnvmDm~ag~Gg-faaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc 800 (870)
+-|+|+|||+|. +|..|.+.+. .|+-+|.. ..+.-+.++|+-.+..|+.++-.-.=+-+|||-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys----------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS----------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE-----------
Confidence 349999999996 9999999987 55666654 6677888999888888887652221245555544
Q ss_pred ChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEe
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~ 845 (870)
||-+.++...+.++++++.=.+.+.
T Consensus 84 --------------------irpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 84 --------------------IRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred --------------------eCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2334566677777777777777665
No 404
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.78 E-value=2.1 Score=44.92 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=55.0
Q ss_pred CCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEE--EcCc---c--cCCCCCCcee
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISA--VMGT---K--RLQFPRNVFD 533 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~--v~da---e--~LPfpd~SFD 533 (870)
+++.+|||+||..|+++....++ -|.|||+-... .-.|...... +.+. . .-.+|+...|
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------PPEGATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------CCCCcccccccccCCHHHHHHHHHhCCCCccc
Confidence 56899999999999998877664 68999874421 1122211110 1110 0 0124678899
Q ss_pred EEEecccccccc-----cCh-------HHHHHHHHhhcCCCcEEEEEE
Q 002884 534 LVHCARCRVPWH-----IDG-------GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 534 lV~Ss~~alhw~-----~D~-------~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+|+|-. .+-. .|. ..+|.-....|+|+|.|+.-.
T Consensus 139 vVlSDM--apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDM--APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEecc--CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 999853 1211 111 234444556789999999873
No 405
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.71 E-value=0.12 Score=49.43 Aligned_cols=37 Identities=22% Similarity=0.593 Sum_probs=27.9
Q ss_pred ceeEEEecccccccc-----cC-hHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCARCRVPWH-----ID-GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss~~alhw~-----~D-~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.||+|+|- ++.-|+ ++ ...+|+.+++.|+|||+|++.
T Consensus 1 ~yDvilcl-SVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCL-SVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEE-S-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEE-EeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 38999995 344443 22 267999999999999999998
No 406
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=89.10 E-value=2.2 Score=44.62 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=73.5
Q ss_pred cccccccccccccccccchhHHhhhcCC-CeEEEEeccCCCC----CChhHHHhh-Cccc--eeccc-cccccCCCCccc
Q 002884 715 LGINWSNVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSP----DTLPIIYER-GLFG--IYHDW-CESFSTYPRSYD 785 (870)
Q Consensus 715 Lgi~W~~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~----~tl~~i~eR-Glig--~~h~w-ce~f~tyPrtyD 785 (870)
|.+.-+.+ ++|+|||+|+.+-.+.-. +. .-|..++.. ..+..+.+| |+-. ++..+ =+.+..+| +||
T Consensus 30 L~~~~g~~--l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d 104 (187)
T COG2242 30 LRPRPGDR--LWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD 104 (187)
T ss_pred hCCCCCCE--EEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence 44444544 999999999988766511 22 334455543 333444443 3322 22222 23333444 555
Q ss_pred hhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe-cChhhHHHHHHHHHcCCc-eEE
Q 002884 786 LLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR-DEPSAVTEVENFLKSLHW-EIL 843 (870)
Q Consensus 786 llHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir-d~~~~~~~~~~~~~~l~W-~~~ 843 (870)
. +|=... -.++.||.-...-|||||.+|+. -+.+....+-..++.+.| ++.
T Consensus 105 a-----iFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 105 A-----IFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred E-----EEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 4 443333 57888999999999999999998 467778888888999999 543
No 407
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=88.45 E-value=1.5 Score=47.65 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCCCCEEEEECCCCchhHHHHhcC-----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC----CCceeEE
Q 002884 465 GKYTRVSLDVGCGVASFGGYLFER-----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP----RNVFDLV 535 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~~a~~La~r-----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp----d~SFDlV 535 (870)
-+++.+||=||++.|.......+- -|+++++++..-.. ....|.+|- +++-+..+.+.|.. -.-.|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRd-L~nmAkkRt--NiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRD-LINMAKKRT--NIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHH-HHHHhhccC--CceeeeccCCCchheeeeeeeEEEE
Confidence 357899999999999766666542 78999998864322 334555542 33333333344422 2468888
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
++-. .-......+...+.-.||+||.|+++
T Consensus 231 FaDv---aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 231 FADV---AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eccC---CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 8752 22222366778889999999999998
No 408
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.45 E-value=3.3 Score=46.79 Aligned_cols=96 Identities=21% Similarity=0.146 Sum_probs=60.8
Q ss_pred CCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-----cCCCCC-CceeEE
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-----RLQFPR-NVFDLV 535 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-----~LPfpd-~SFDlV 535 (870)
.+.+||=+|||. |.++..+++. .|+++|.++.- .++|++.+........... .+.... ..||+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R-----l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER-----LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-----HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 344999999997 7666555553 89999999984 4455553321111111111 011122 369999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEECCCcC
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSATPVYQ 574 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p~~~ 574 (870)
+=.-. ...++..+.+++||||.+++.+.+...
T Consensus 243 ie~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG-------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EECCC-------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 86422 345899999999999999998655444
No 409
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=88.15 E-value=0.23 Score=53.27 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=66.2
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---hhCccceeccccccccCCC-Cccchhhhhccccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---ERGLFGIYHDWCESFSTYP-RSYDLLHADHLFSQ 795 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS~ 795 (870)
..-.++|+||+.|-.+..|+..+| =-++-+|.. .+++-.. +-+++-.|-.--|-|..|- +++|||-. .|=-+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiis-SlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIIS-SLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhh-hhhhh
Confidence 356799999999999999999987 122223433 4444433 3578888888889999995 99999754 11112
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
|.+ +++--|+-.--+|+|.|.||-+
T Consensus 149 W~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhc--cCchHHHHHHHhcCCCccchhH
Confidence 332 3444566666788999988866
No 410
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.80 E-value=2.4 Score=45.43 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=71.2
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCC
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQF 527 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPf 527 (870)
+..++.++.. +.++.||||--|.+..+|... .+++.|+++.-+..|...+......+......++.-.++
T Consensus 7 L~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 7 LTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 4445555543 556999999999999999875 789999999999888766666555555555555544445
Q ss_pred CCC-ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 528 PRN-VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 528 pd~-SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
..+ .+|+|+... +.- .-....|.+-...|+-=-.|++.
T Consensus 81 ~~~d~~d~ivIAG--MGG-~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 81 ELEDEIDVIVIAG--MGG-TLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CccCCcCEEEEeC--CcH-HHHHHHHHHhhhhhcCcceEEEC
Confidence 433 799988653 210 01145566666666544466664
No 411
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=87.57 E-value=0.36 Score=56.57 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=48.5
Q ss_pred cccccccccchhHHhhhc------CCCeEEEEeccCCC-C---CChh-HHHhhCccceeccccccccCC--CCccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALK------DLQVWVMNVVNVNS-P---DTLP-IIYERGLFGIYHDWCESFSTY--PRSYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~------~~~vwvmNvvp~~~-~---~tl~-~i~eRGlig~~h~wce~f~ty--PrtyDllHa 789 (870)
..|||+|||.|....+-+ ...+ -|..++. + -+|. .|...|+-+.++......... |.-.|+|-+
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~---~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAV---KVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCES---EEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCe---EEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence 469999999999853221 1122 2223332 2 2332 234445433333333333333 678888654
Q ss_pred hccc-ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 790 DHLF-SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 790 ~~lf-S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
-++ |++-+ -.+..+|.-.||.|+|||.+|=+
T Consensus 265 -ElLGsfg~n-El~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 265 -ELLGSFGDN-ELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp ----BTTBTT-TSHHHHHHHGGGGEEEEEEEESS
T ss_pred -eccCCcccc-ccCHHHHHHHHhhcCCCCEEeCc
Confidence 222 22212 24456899999999999988733
No 412
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.23 E-value=2.9 Score=49.90 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCCc-hhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc---------cC-------
Q 002884 466 KYTRVSLDVGCGVA-SFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK---------RL------- 525 (870)
Q Consensus 466 ~~~~~VLDIGCGtG-~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae---------~L------- 525 (870)
.++.+||=+|||.- ..+...++ ..|+++|..+.- .+.++..|........... .+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~r-----le~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV-----AEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 46889999999984 44444433 379999998873 3445555543211111000 00
Q ss_pred ---CCCC--CceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 526 ---QFPR--NVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 526 ---Pfpd--~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
.+.. ..+|+|+..- ..+-...+..+..++.+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0111 3599999852 232222233446999999999999987644
No 413
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=87.08 E-value=0.51 Score=54.55 Aligned_cols=112 Identities=18% Similarity=0.241 Sum_probs=67.0
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceec-cccccccCCC---Cccchhhhhc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYH-DWCESFSTYP---RSYDLLHADH 791 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h-~wce~f~tyP---rtyDllHa~~ 791 (870)
..|||++||+|.|+..|++..- .|+-++.. ..+..+.+ .|+ +-+++ |+.+.+..++ .+||+|-.+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 3599999999999999987632 34445543 33333322 343 33444 4443333332 4688765411
Q ss_pred ccccccCCcC-hhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 792 LFSQLKNRCK-LVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 792 lfS~~~~rc~-~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
.|-. ...+|-.+.+ |+|+|.++++-+...+..--..+..-.|++..
T Consensus 371 ------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 371 ------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred ------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEE
Confidence 2222 2345555555 89999999997777776666666666787653
No 414
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.00 E-value=0.3 Score=49.63 Aligned_cols=45 Identities=31% Similarity=0.522 Sum_probs=36.3
Q ss_pred cCC-CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 778 STY-PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 778 ~ty-PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
+.| |++-|+|-|.|++-++.-+-. ..-|-|-.|+|||||++-+.-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEc
Confidence 445 799999999999987654323 358899999999999998883
No 415
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=86.92 E-value=0.39 Score=54.89 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=51.6
Q ss_pred ccccccccchhHHhhhcCCC---eEEEEeccCCCC-----CChhHHHhhCccceeccccccccCCC-Cccchhhhhcccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQ---VWVMNVVNVNSP-----DTLPIIYERGLFGIYHDWCESFSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~---vwvmNvvp~~~~-----~tl~~i~eRGlig~~h~wce~f~tyP-rtyDllHa~~lfS 794 (870)
-++|++||+|+...+..... +.=.|..+.... .--..+.++--+ +.+ |+-. .+|+ .|||.+-+.-+-
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~-~~~~-~~fedn~fd~v~~ld~~- 188 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVA-DFGK-MPFEDNTFDGVRFLEVV- 188 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehh-hhhc-CCCCccccCcEEEEeec-
Confidence 36699999999998876543 221122211110 011112222223 222 3333 2444 899986541111
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
..--+...++.||-|+|+|||++|.-
T Consensus 189 --~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 189 --CHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred --ccCCcHHHHHHHHhcccCCCceEEeH
Confidence 11135668999999999999999976
No 416
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=86.92 E-value=0.12 Score=54.66 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=46.4
Q ss_pred ccccccccchhHHhhhcCC--Ce-EEEEeccCCCC---CChhHHHhhCc--cceeccccccccCCC--Cccchhhhhccc
Q 002884 724 NVMDMRAVYGGFAAALKDL--QV-WVMNVVNVNSP---DTLPIIYERGL--FGIYHDWCESFSTYP--RSYDLLHADHLF 793 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~--~v-wvmNvvp~~~~---~tl~~i~eRGl--ig~~h~wce~f~tyP--rtyDllHa~~lf 793 (870)
.|||+|||+|=++|.|... ++ -|..| ..+.. .-...+...|+ +.+.|.= ....+| -.||.||..
T Consensus 75 ~VLeIGtGsGY~aAlla~lvg~~g~Vv~v-E~~~~l~~~A~~~l~~~~~~nv~~~~gd--g~~g~~~~apfD~I~v~--- 148 (209)
T PF01135_consen 75 RVLEIGTGSGYQAALLAHLVGPVGRVVSV-ERDPELAERARRNLARLGIDNVEVVVGD--GSEGWPEEAPFDRIIVT--- 148 (209)
T ss_dssp EEEEES-TTSHHHHHHHHHHSTTEEEEEE-ESBHHHHHHHHHHHHHHTTHSEEEEES---GGGTTGGG-SEEEEEES---
T ss_pred EEEEecCCCcHHHHHHHHhcCccceEEEE-CccHHHHHHHHHHHHHhccCceeEEEcc--hhhccccCCCcCEEEEe---
Confidence 4999999999988888754 22 22222 21111 11122233354 2334421 223444 469999983
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
|....+-..+=+-|||||.+|+-
T Consensus 149 ------~a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 149 ------AAVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp ------SBBSS--HHHHHTEEEEEEEEEE
T ss_pred ------eccchHHHHHHHhcCCCcEEEEE
Confidence 23334445556669999999974
No 417
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=86.56 E-value=4.2 Score=46.53 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhhc-CCCCCEEEEECCCCchhHHHHhc----C----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEc-
Q 002884 451 YIDFIQQAVPKIAW-GKYTRVSLDVGCGVASFGGYLFE----R----DVLTMSFAPKDEHDAQIQFALERGIPAISAVM- 520 (870)
Q Consensus 451 Yid~L~~~Lp~i~~-g~~~~~VLDIGCGtG~~a~~La~----r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~- 520 (870)
|......++|-+.. .+++.+|||+.+..|+=+..|.+ . .|++=|+++.-++.-..+. .....+......
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~ 216 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNH 216 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecc
Confidence 44445556655443 46889999999999986655554 2 5788888887554433222 222222221111
Q ss_pred CcccC---------CCCCCceeEEEec-cccc---c----------cccC----h----HHHHHHHHhhcCCCcEEEEEE
Q 002884 521 GTKRL---------QFPRNVFDLVHCA-RCRV---P----------WHID----G----GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 521 dae~L---------Pfpd~SFDlV~Ss-~~al---h----------w~~D----~----~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+.... +.....||-|+|- .|.- + |... + -.+|..-.|+||+||.++.|+
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 11111 2334579999872 2211 1 1100 0 257888899999999999995
Q ss_pred CC
Q 002884 570 TP 571 (870)
Q Consensus 570 ~p 571 (870)
..
T Consensus 297 CS 298 (375)
T KOG2198|consen 297 CS 298 (375)
T ss_pred cC
Confidence 43
No 418
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=85.76 E-value=0.27 Score=51.46 Aligned_cols=125 Identities=8% Similarity=0.024 Sum_probs=60.6
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH---h-hCc--cceec-cccccccCCCCccchhhhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY---E-RGL--FGIYH-DWCESFSTYPRSYDLLHADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~---e-RGl--ig~~h-~wce~f~tyPrtyDllHa~~lfS~ 795 (870)
.|||++||+|.|+..++.+.. -.|+-++.. ..+..+. + -|+ +-+++ |+.+.+....+.||+|=++-=|-
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~- 132 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR- 132 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC-
Confidence 599999999999975443432 123333332 2222211 1 232 33444 44333322235689887654432
Q ss_pred ccCCcChhhHHHhh--hhcccCCcEEEEecChhhHHHHHHHHHcCCceEEEeecCCCceEEEEEe
Q 002884 796 LKNRCKLVPVMAEV--DRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILFAFSKDQEGVLSAQK 858 (870)
Q Consensus 796 ~~~rc~~~~vl~Em--DRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~~~~~~~e~iL~~~K 858 (870)
.. ....++--+ -.+|.|+|.+|+.-.... .+-.+.. .|++.....-..-++.+.+|
T Consensus 133 --~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~~~--~~~~~~~--~~~~~~~k~yG~s~~~~~~~ 190 (199)
T PRK10909 133 --KG-LLEETINLLEDNGWLADEALIYVESEVEN--GLPTVPA--NWQLHREKVAGQVAYRLYIR 190 (199)
T ss_pred --CC-hHHHHHHHHHHCCCcCCCcEEEEEecCCC--CcccCCC--ccEEEEEecCCCEEEEEEEE
Confidence 11 112232222 356899999999854321 0001111 36654332223445666665
No 419
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=85.64 E-value=1.1 Score=49.90 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCc--cceec-cccccccCCCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGL--FGIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGl--ig~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
..|||++||.|.|+..|+..+- .|+-+|.. ..+..+. ..|+ +-+++ |..+-....+..||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d---- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN---- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC----
Confidence 4699999999999999998753 56666654 4544432 3355 22333 2221111122468887764
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
-.|..+...++++=.-++|++.++++=....+.+--..+ -.|++..
T Consensus 248 --PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l--~~y~~~~ 293 (315)
T PRK03522 248 --PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL--PGYRIER 293 (315)
T ss_pred --CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc--cCcEEEE
Confidence 234344334444444478999999996655543333333 2577653
No 420
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=85.62 E-value=1.4 Score=48.55 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=78.7
Q ss_pred ccccccccchhHHhhhcCC-C---eEEEEeccCCC---CCChhHHHhhCccceecc--ccccccCCC---Cccchhhhhc
Q 002884 724 NVMDMRAVYGGFAAALKDL-Q---VWVMNVVNVNS---PDTLPIIYERGLFGIYHD--WCESFSTYP---RSYDLLHADH 791 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-~---vwvmNvvp~~~---~~tl~~i~eRGlig~~h~--wce~f~tyP---rtyDllHa~~ 791 (870)
-++|+|||.|..+-+|..- + |...-+.++.- ..+.+...-.|-|++.|. =.+.+.+|| -+||+|-++-
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 4999999999998887643 2 33344443321 233444555678888885 456677887 7888875542
Q ss_pred --cccc-----------c--------cCCcC--hhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHH-HHcCCceE
Q 002884 792 --LFSQ-----------L--------KNRCK--LVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENF-LKSLHWEI 842 (870)
Q Consensus 792 --lfS~-----------~--------~~rc~--~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~-~~~l~W~~ 842 (870)
+|+. | ...|. +..++.=.-|.|+|||+++|.-. ......+... .+.--|.+
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~ 310 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKA 310 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchh
Confidence 2221 1 11122 22556667899999999999732 3333433333 33334544
Q ss_pred EEe-ecCCCceEEEEEe
Q 002884 843 LFA-FSKDQEGVLSAQK 858 (870)
Q Consensus 843 ~~~-~~~~~e~iL~~~K 858 (870)
.+. |-...+++++..+
T Consensus 311 ~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 311 AVVSDFAGRPRFVIIHR 327 (328)
T ss_pred heeecccCCcceEEEEe
Confidence 443 3335667766544
No 421
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=85.56 E-value=2.9 Score=47.61 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=74.1
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHHhhCccceeccccccccCCCCccchhhhhcccccccCCcCh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKL 802 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~ 802 (870)
..|||+||..|||.-.|.+++. .|+.+|....-+.+.+-|.+-.+-.---.+.+-++.+|+|-||-+ |..
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-------e~P 282 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-------EKP 282 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-------cCH
Confidence 4699999999999999999986 566677544444555555444443222222222577898887332 555
Q ss_pred hhHHHhhhhcccCC--cEEEEecCh------hh----HHHHHHHHH--cCCceEEEe--ecCCCceEEE
Q 002884 803 VPVMAEVDRIVRPG--GKLIVRDEP------SA----VTEVENFLK--SLHWEILFA--FSKDQEGVLS 855 (870)
Q Consensus 803 ~~vl~EmDRILRPg--G~~iird~~------~~----~~~~~~~~~--~l~W~~~~~--~~~~~e~iL~ 855 (870)
..++.=|-+-|.-| +.+||.-+. +. +..|...+. ++.+.+++. +|+..|.-+.
T Consensus 283 ~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khLyHdReEiTv~ 351 (357)
T PRK11760 283 ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQLYHDREEVTVH 351 (357)
T ss_pred HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeeeecCCceEEEE
Confidence 66776677777666 578888322 11 233443332 334555544 6766565433
No 422
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.56 E-value=3.5 Score=45.67 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC--cccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG--TKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d--ae~LPfpd~SFDlV~Ss~ 539 (870)
++.+||-+|||. |.++..+++. .|++++.++. +.+++++.|....+.... ...+....+.||+|+-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-----SLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-----HHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 477899999863 4444445442 5888888876 334566666533221111 011111123589998642
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ....+..+.++|+|||.+++.+
T Consensus 244 G-------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 244 G-------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 2357788899999999999874
No 423
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=85.48 E-value=0.32 Score=54.85 Aligned_cols=131 Identities=20% Similarity=0.375 Sum_probs=61.6
Q ss_pred HHHHHHhhcc-cccceeeeccccccccccccccccccchhHHhhhcCCCe---EEEEeccCCCCCChhHHHhhC------
Q 002884 696 FTRDYKHWRY-VVSTSYMSGLGINWSNVRNVMDMRAVYGGFAAALKDLQV---WVMNVVNVNSPDTLPIIYERG------ 765 (870)
Q Consensus 696 f~~dye~W~~-~V~~TY~~~Lgi~W~~~RnvmDm~ag~GgfaaaL~~~~v---wvmNvvp~~~~~tl~~i~eRG------ 765 (870)
....+..|-+ .+-..|...+... ..-..||||+||-||=-.--...+| +..-+++ ..|.-+.+|=
T Consensus 37 ~lR~fNNwvKs~LI~~~~~~~~~~-~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~----~si~ea~~Ry~~~~~~ 111 (331)
T PF03291_consen 37 HLRNFNNWVKSVLIQKYAKKVKQN-RPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE----ESIEEARERYKQLKKR 111 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCCCT-TTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H----HHHHHHHHHHHHHHTS
T ss_pred HHHHHhHHHHHHHHHHHHHhhhcc-CCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH----HHHHHHHHHHHHhccc
Confidence 3456677855 3323343222111 1346799999999994433333333 2233322 2333333332
Q ss_pred ---------ccceec-ccc--ccc-cCC-C--Cccchhhhhcccccc---cCCcChhhHHHhhhhcccCCcEEEEe--cC
Q 002884 766 ---------LFGIYH-DWC--ESF-STY-P--RSYDLLHADHLFSQL---KNRCKLVPVMAEVDRIVRPGGKLIVR--DE 824 (870)
Q Consensus 766 ---------lig~~h-~wc--e~f-~ty-P--rtyDllHa~~lfS~~---~~rc~~~~vl~EmDRILRPgG~~iir--d~ 824 (870)
+....+ .=| +.+ ..| | +.||+|=| -|++- ...-....+|.-+-..|||||+||.+ |.
T Consensus 112 ~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 112 NNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccccccccchhheeccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 222222 211 111 123 2 59999755 23211 11123446888999999999999998 43
Q ss_pred hhhHHHHHH
Q 002884 825 PSAVTEVEN 833 (870)
Q Consensus 825 ~~~~~~~~~ 833 (870)
..++.+++.
T Consensus 190 ~~i~~~l~~ 198 (331)
T PF03291_consen 190 DEIVKRLRE 198 (331)
T ss_dssp HHHHCCHHC
T ss_pred HHHHHHHHh
Confidence 333333433
No 424
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=85.26 E-value=0.83 Score=47.42 Aligned_cols=111 Identities=25% Similarity=0.417 Sum_probs=67.2
Q ss_pred ccccccccch--hHHhhhc--CCCeEEEEeccCCCC--CCh-hHHHhhCcc--ceeccccccccCCCCccchhhhhcccc
Q 002884 724 NVMDMRAVYG--GFAAALK--DLQVWVMNVVNVNSP--DTL-PIIYERGLF--GIYHDWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 724 nvmDm~ag~G--gfaaaL~--~~~vwvmNvvp~~~~--~tl-~~i~eRGli--g~~h~wce~f~tyPrtyDllHa~~lfS 794 (870)
+++|+|+|-| |.--|+. +..|. ++..... +-| .++.+=||- -++|.-.|. ..++..||+|=|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~---LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a----- 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVT---LVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA----- 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEE---EEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEE---EEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe-----
Confidence 5999998865 3333333 33332 2222222 333 245566774 344444444 448899999887
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecC---hhhHHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDE---PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~---~~~~~~~~~~~~~l~W~~~~~ 845 (870)
.+-+.+..++--+-++|+|||.+++--- .+.+..++...+.+.++....
T Consensus 122 --RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 122 --RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp --ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred --ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeee
Confidence 3446788777778899999999888743 345666677777777776543
No 425
>PLN02672 methionine S-methyltransferase
Probab=85.17 E-value=0.92 Score=58.30 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=31.7
Q ss_pred hhHHHhhhhcccCCcEEEEecChhhHHHHH-HHHHcCCceEE
Q 002884 803 VPVMAEVDRIVRPGGKLIVRDEPSAVTEVE-NFLKSLHWEIL 843 (870)
Q Consensus 803 ~~vl~EmDRILRPgG~~iird~~~~~~~~~-~~~~~l~W~~~ 843 (870)
..|+.+.-++|+|||++++-=-..--..|. .++.+..|+..
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCee
Confidence 468889999999999999985555556777 57777766654
No 426
>PRK00536 speE spermidine synthase; Provisional
Probab=85.06 E-value=0.79 Score=50.16 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=57.6
Q ss_pred ccccccccccccchhHHhhhcCCCeEEEEeccCCCC------CChhHHHhhCc----cceeccccccccCCCCccchhhh
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP------DTLPIIYERGL----FGIYHDWCESFSTYPRSYDLLHA 789 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~------~tl~~i~eRGl----ig~~h~wce~f~tyPrtyDllHa 789 (870)
...|+||=+|.|=||.++-+.+.+- -.-+|.+|.. .-||.+-. ++ +-++- |. ......+||+|=.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 5689999999999999999998873 1122333321 11333221 21 11111 21 1122478999999
Q ss_pred hcccccccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 790 DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 790 ~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
|.+|+ ....-.+.|+|+|||.++..-
T Consensus 146 Ds~~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQEPD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCCC--------hHHHHHHHHhcCCCcEEEECC
Confidence 88776 223456899999999999974
No 427
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=84.98 E-value=0.25 Score=52.60 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=68.8
Q ss_pred cccccccccccchhHHhhhcCCCeEEEEeccCCCCCChhHHH-----hhCccceec-cccccccCCCCccchhhhhcccc
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPIIY-----ERGLFGIYH-DWCESFSTYPRSYDLLHADHLFS 794 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~i~-----eRGlig~~h-~wce~f~tyPrtyDllHa~~lfS 794 (870)
....+||.|||.|=....|+-.-.=.+-+|... +..+..+. +.+-+|-+. .==+.|.+=+..||+|.+.=+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~-~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV-EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccC-HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 466799999999999987765432111222211 13333444 233333332 22233333347999998866666
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEecChhh----------------HHHHHHHHHcCCceEEEe
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPSA----------------VTEVENFLKSLHWEILFA 845 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird~~~~----------------~~~~~~~~~~l~W~~~~~ 845 (870)
++.+ -++...|.-.-.-|||+|++||-++... ...++.|+++=..++...
T Consensus 134 hLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTD-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCH-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 6554 3445566667778999999999854311 577888888888877654
No 428
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=84.91 E-value=2.5 Score=46.09 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=45.9
Q ss_pred CCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEec
Q 002884 467 YTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCA 538 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss 538 (870)
...+|||||||.--++..+... .++|+||+..++.... .+....+++....+.+...- -+....|+++.-
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~-~~~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSD-PPKEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTS-HTTSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeecc-CCCCCcchhhHH
Confidence 4789999999999888766543 7999999998776554 34455566655556553222 245678998864
No 429
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=84.61 E-value=1.3 Score=46.87 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=24.2
Q ss_pred hHHHhhhhcccCCcEEE-EecChhhHHHHHHHHHc
Q 002884 804 PVMAEVDRIVRPGGKLI-VRDEPSAVTEVENFLKS 837 (870)
Q Consensus 804 ~vl~EmDRILRPgG~~i-ird~~~~~~~~~~~~~~ 837 (870)
.+|.|.-=+||+||.++ |+|=.+...-+...+.+
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~ 198 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDVKELHEWMVKHLEE 198 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHh
Confidence 67889999999999987 45655555555554443
No 430
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=84.56 E-value=0.8 Score=48.93 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=78.8
Q ss_pred ccccccccccccccchhHHhhhc----CCC-eEEEEeccCCCCCChhHHHhhCccc---eec--ccccccc-CCCCccch
Q 002884 718 NWSNVRNVMDMRAVYGGFAAALK----DLQ-VWVMNVVNVNSPDTLPIIYERGLFG---IYH--DWCESFS-TYPRSYDL 786 (870)
Q Consensus 718 ~W~~~RnvmDm~ag~GgfaaaL~----~~~-vwvmNvvp~~~~~tl~~i~eRGlig---~~h--~wce~f~-tyPrtyDl 786 (870)
.-..-++||.+|.+.|=-|..|+ +.+ +.+.=+-|-........+.+-|+-. +++ |+-+-++ ...-+|||
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 33467889999977765444443 233 3332222222224455566666533 444 6777777 46789999
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEec---------C-----hhhHHHHHHHHHcCCceEEEee--cCCC
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRD---------E-----PSAVTEVENFLKSLHWEILFAF--SKDQ 850 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird---------~-----~~~~~~~~~~~~~l~W~~~~~~--~~~~ 850 (870)
|-.|+ ..-.....|-+.=++|||||.+|+.+ + ......++....-+.|.-+..- -.-+
T Consensus 136 iFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~g 209 (219)
T COG4122 136 VFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLG 209 (219)
T ss_pred EEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecC
Confidence 74422 22355568888889999999998873 1 1223335555555555432211 1134
Q ss_pred ceEEEEEeC
Q 002884 851 EGVLSAQKG 859 (870)
Q Consensus 851 e~iL~~~K~ 859 (870)
++++++.|.
T Consensus 210 DGl~v~~k~ 218 (219)
T COG4122 210 DGLLLSRKR 218 (219)
T ss_pred CceEEEeec
Confidence 889999885
No 431
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=84.54 E-value=3.7 Score=44.47 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc---ccC-CCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCG-VASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT---KRL-QFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCG-tG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da---e~L-Pfpd~SFDlV~S 537 (870)
..+.+||..||| .|.++..++.. +|++++.++... +.++..|.......... ..+ ......+|+|+.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-----ELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-----HHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 356788888876 36666666653 688888877633 33444555322211111 000 123467999986
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. .....+.++.+.|+++|.++..+
T Consensus 239 ~~-------g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 239 FV-------GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CC-------CCHHHHHHHHHHhhcCCEEEEEC
Confidence 42 12467889999999999999763
No 432
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=84.42 E-value=0.69 Score=51.10 Aligned_cols=114 Identities=11% Similarity=0.166 Sum_probs=72.1
Q ss_pred cccccccccccccccchhHHhhhcCCC-eEEEEeccCCCCCChhHHHhhCccceeccccc-------------cccCCCC
Q 002884 717 INWSNVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSPDTLPIIYERGLFGIYHDWCE-------------SFSTYPR 782 (870)
Q Consensus 717 i~W~~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~~tl~~i~eRGlig~~h~wce-------------~f~tyPr 782 (870)
+.+...|.||=+|-|-||.++.+.+.+ |==+-+|.+|. .+ +.+.|..++..|.++. -.-.+++
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~V-i~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AV-IELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HH-HHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 455667899999999999999998875 42222233322 22 5566777777775544 1223667
Q ss_pred ccchhhh---------hcccccccCCcChhhHHHhhhhcccCCcEEEEecC-----hhhHHHHHHHHHcCCce
Q 002884 783 SYDLLHA---------DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-----PSAVTEVENFLKSLHWE 841 (870)
Q Consensus 783 tyDllHa---------~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-----~~~~~~~~~~~~~l~W~ 841 (870)
+||+|=. .+||| ....-...|+|+|+|.++..-. .+.+..+...++++.+.
T Consensus 149 ~fDvIi~D~tdp~gp~~~Lft--------~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 149 KFDVIIVDSTDPVGPAEALFT--------EEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred cCCEEEEcCCCCCCcccccCC--------HHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 9999743 33443 2456677899999999999821 12334555555666333
No 433
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=84.01 E-value=9.9 Score=41.72 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=63.1
Q ss_pred CCCEEEEECCCCchhHHHHhcC--------CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCcccCC---CCCCceeE
Q 002884 467 YTRVSLDVGCGVASFGGYLFER--------DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKRLQ---FPRNVFDL 534 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La~r--------~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~LP---fpd~SFDl 534 (870)
.+...+|+|.|+..=++.|.+. +.+.+|++...+.........+. +++ +..++++..++ .+...=-+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~-v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE-VNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe-EeehhhhHHHHHhcccCCCeEE
Confidence 3679999999999766666542 78999999987766554455444 332 33444442222 12222222
Q ss_pred EE-ecccccccccCh-HHHHHHHHhhcCCCcEEEEEE
Q 002884 535 VH-CARCRVPWHIDG-GKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 535 V~-Ss~~alhw~~D~-~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++ ....+-.+.++. ..+|..+..+|+||-+|++.+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22 221212333443 678899999999999999873
No 434
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.95 E-value=4.4 Score=45.84 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHc-CCCcEEEEcCccc-----C-CC-CCCce
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALER-GIPAISAVMGTKR-----L-QF-PRNVF 532 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~er-gl~~~~~v~dae~-----L-Pf-pd~SF 532 (870)
.++.+||.+|||. |.++..+++. .|++++.++.++ +.+++. +. ..+...... + .+ ....+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-----~~~~~~~~~--~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-----EMARSHLGA--ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-----HHHHHcCCc--EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3578999999987 7777666653 488888887643 344444 32 111111110 1 12 23369
Q ss_pred eEEEecccc--------------cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 533 DLVHCARCR--------------VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 533 DlV~Ss~~a--------------lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
|+|+..... ++-+.+....+.++.++|+|+|.+++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999874210 0111234678999999999999999874
No 435
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=83.88 E-value=3 Score=48.95 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCEEEEECCCCch--hHHHHhc----CCEEEEeCChhhHHHHHHHHHH--HcCCCcEEE-EcCcccCCCCC-CceeEEE
Q 002884 467 YTRVSLDVGCGVAS--FGGYLFE----RDVLTMSFAPKDEHDAQIQFAL--ERGIPAISA-VMGTKRLQFPR-NVFDLVH 536 (870)
Q Consensus 467 ~~~~VLDIGCGtG~--~a~~La~----r~VtgVDiSp~ml~~A~vq~A~--ergl~~~~~-v~dae~LPfpd-~SFDlV~ 536 (870)
....++|+|.|.|. .+..+.- +.++.||.+..|+.......-. +.|-+.+.- +.-...+|.+. +.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 45678899888774 3333333 2789999999988766543222 223222222 23346777654 4599999
Q ss_pred ecccccccccCh--HHHHHH-HHhhcCCCcEEEEE
Q 002884 537 CARCRVPWHIDG--GKLLLE-LNRVLRPGGYFVWS 568 (870)
Q Consensus 537 Ss~~alhw~~D~--~~vL~E-i~RVLKPGG~Lv~S 568 (870)
|++.+.+..... ..+... +.+..++||++++.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 987533322211 334444 45678999999987
No 436
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=82.90 E-value=0.58 Score=51.55 Aligned_cols=58 Identities=19% Similarity=0.423 Sum_probs=33.8
Q ss_pred CCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC---CEEEEeCChh
Q 002884 440 GGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER---DVLTMSFAPK 498 (870)
Q Consensus 440 ggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r---~VtgVDiSp~ 498 (870)
||.-...++....+.+...+ .-...-.+.+|||+|||.|.-+...... .+...|++..
T Consensus 90 Gg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~ 150 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAE 150 (282)
T ss_pred cceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchh
Confidence 33444455555556666443 1111235789999999999766554432 5566666654
No 437
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=82.48 E-value=1.1 Score=45.87 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCceeEEEecccccccc--------cCh---HHHHHHHHhhcCCCcEEEEEECCCcCch
Q 002884 529 RNVFDLVHCARCRVPWH--------IDG---GKLLLELNRVLRPGGYFVWSATPVYQKL 576 (870)
Q Consensus 529 d~SFDlV~Ss~~alhw~--------~D~---~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL 576 (870)
.++||.+.|.. ++.+. .|+ ...+.++.++|||||.|+++.|.+.+.+
T Consensus 61 ~~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i 118 (177)
T PF03269_consen 61 AGSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI 118 (177)
T ss_pred hccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce
Confidence 46799998853 34322 122 5789999999999999999976655443
No 438
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=82.33 E-value=1.3 Score=52.18 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred ccccccccchhHHhhhcC----CCeEEEEeccCCCCCChhHHHhh-Cccc--eeccccccc-cCCCCccchhh----hhc
Q 002884 724 NVMDMRAVYGGFAAALKD----LQVWVMNVVNVNSPDTLPIIYER-GLFG--IYHDWCESF-STYPRSYDLLH----ADH 791 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~----~~vwvmNvvp~~~~~tl~~i~eR-Glig--~~h~wce~f-~tyPrtyDllH----a~~ 791 (870)
.||||+|+-||=..+|++ .+..|-|=+....-..|.-..+| |+-- +.+.-...+ ..+|..||.|. |.|
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG 195 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSG 195 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCC
Confidence 499999999997766654 35433322221112444555565 5422 222111122 24577899987 443
Q ss_pred --cccccc-----------CCcCh--hhHHHhhhhcccCCcEEEEe
Q 002884 792 --LFSQLK-----------NRCKL--VPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 792 --lfS~~~-----------~rc~~--~~vl~EmDRILRPgG~~iir 822 (870)
+|..-. .+|.- ..||...-++|||||.+|.+
T Consensus 196 ~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 196 EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 333210 00111 27888899999999999998
No 439
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=82.32 E-value=0.91 Score=50.15 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=36.1
Q ss_pred CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 782 RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 782 rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
.+||..-...+.+++..++....+|-||=|+|||||...|.
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 79999888888888888999999999999999999985554
No 440
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=81.97 E-value=2.2 Score=46.61 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=67.2
Q ss_pred ccccccccccccccccchhHHhhhc----CC-CeEEEEeccCCCCCChhHHHhhCccc-ee---ccccccccCCCCccch
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALK----DL-QVWVMNVVNVNSPDTLPIIYERGLFG-IY---HDWCESFSTYPRSYDL 786 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~----~~-~vwvmNvvp~~~~~tl~~i~eRGlig-~~---h~wce~f~tyPrtyDl 786 (870)
++.-+.. ||+.|+|.|.++++|+ .. .||..=+-+-...-.+.-+-+-||.- +- .|.|+.... ..||.
T Consensus 91 gi~pg~r--VlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~--~~vDa 166 (256)
T COG2519 91 GISPGSR--VLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE--EDVDA 166 (256)
T ss_pred CCCCCCE--EEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc--cccCE
Confidence 4544544 9999999999999998 33 34444332222111111111225544 22 267766443 37776
Q ss_pred hhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecC-hhhHHHHHHHHHcCCce
Q 002884 787 LHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE-PSAVTEVENFLKSLHWE 841 (870)
Q Consensus 787 lHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~-~~~~~~~~~~~~~l~W~ 841 (870)
|-. +--..-.+|--++.+|+|||.+++=-+ .+-+.++-..++..+|-
T Consensus 167 v~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 167 VFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred EEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 554 222345799999999999999987654 44455555555555553
No 441
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=81.52 E-value=1.7 Score=41.76 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCchhHHHHhcCCEEEEeC
Q 002884 466 KYTRVSLDVGCGVASFGGYLFERDVLTMSF 495 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r~VtgVDi 495 (870)
.+....+|||||.|.+...|......|..+
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCCcccc
Confidence 356689999999999988887765544444
No 442
>PRK10742 putative methyltransferase; Provisional
Probab=81.25 E-value=9.5 Score=41.69 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=28.1
Q ss_pred EEEEECCCCchhHHHHhcC--CEEEEeCChhhHH
Q 002884 470 VSLDVGCGVASFGGYLFER--DVLTMSFAPKDEH 501 (870)
Q Consensus 470 ~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~ 501 (870)
+|||+=+|.|..+..++.+ .|++++-+|....
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaa 124 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAA 124 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHH
Confidence 8999999999999888875 8999999997543
No 443
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=80.84 E-value=1.8 Score=46.48 Aligned_cols=115 Identities=22% Similarity=0.333 Sum_probs=81.2
Q ss_pred ccccccccchhHHhhhcCC-----CeEEEEeccCCCCCChhHHHhhC-ccceeccccccccCCCCccchh--hhhccccc
Q 002884 724 NVMDMRAVYGGFAAALKDL-----QVWVMNVVNVNSPDTLPIIYERG-LFGIYHDWCESFSTYPRSYDLL--HADHLFSQ 795 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~-----~vwvmNvvp~~~~~tl~~i~eRG-lig~~h~wce~f~tyPrtyDll--Ha~~lfS~ 795 (870)
.||-+||..|....++.|- .|+.+-.+|....+-+.++-.|- +|.++.|=. +|..|-++ ..|-+|..
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr-----~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR-----HPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT-----SGGGGTTTS--EEEEEEE
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC-----ChHHhhcccccccEEEec
Confidence 4999999999999888753 36888888888778888888876 888888743 55444432 45566776
Q ss_pred ccCCcChhhHHHhhhhcccCCcEEEEe----------cChhhHHHHHHHHHcCCceEE
Q 002884 796 LKNRCKLVPVMAEVDRIVRPGGKLIVR----------DEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 796 ~~~rc~~~~vl~EmDRILRPgG~~iir----------d~~~~~~~~~~~~~~l~W~~~ 843 (870)
..++-....+++-+.+-||+||+++|. ++..+.......++.-..+..
T Consensus 151 VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 666666778889999999999999988 223344444455555555553
No 444
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.27 E-value=7.9 Score=43.84 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCCCCEEEEECCCC-chhHHHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC---------CCCCC
Q 002884 465 GKYTRVSLDVGCGV-ASFGGYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL---------QFPRN 530 (870)
Q Consensus 465 g~~~~~VLDIGCGt-G~~a~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L---------Pfpd~ 530 (870)
-+.+.+||-+|+|. |..+...++ .+|+.+|+++.- ++.|++.|............. -+...
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~R-----le~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANR-----LELAKKFGATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHH-----HHHHHHhCCeEEeeccccccHHHHHHHHHhhcccc
Confidence 35688999999996 444443343 399999999984 455566665443333221101 12234
Q ss_pred ceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 531 VFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 531 SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.||+++... -....++.....||+||.+++.+
T Consensus 242 ~~d~~~dCs-------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 242 QPDVTFDCS-------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCCeEEEcc-------CchHHHHHHHHHhccCCEEEEec
Confidence 488888531 23467777889999999988873
No 445
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=80.23 E-value=1.1 Score=49.66 Aligned_cols=44 Identities=11% Similarity=0.333 Sum_probs=35.5
Q ss_pred CCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 781 PRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 781 PrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
+..||+|-|-+||..... -....|+-.+.+.|+|||++++--..
T Consensus 221 ~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 478999999999876543 34557999999999999999887543
No 446
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.09 E-value=2.5 Score=45.69 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=56.4
Q ss_pred CCEEEEECCCCchhHHHHhcC-------------CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC-cccC--------
Q 002884 468 TRVSLDVGCGVASFGGYLFER-------------DVLTMSFAPKDEHDAQIQFALERGIPAISAVMG-TKRL-------- 525 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r-------------~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d-ae~L-------- 525 (870)
..+|+|+.+..|+++..|.++ .|++||+-+. . .++.+..+.+ ....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a-----------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A-----------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C-----------ccCceEEeecccCCHhHHHHHHH
Confidence 578999999999988877642 3999998763 1 1222333332 2111
Q ss_pred CCCCCceeEEEeccc----ccccccCh------HHHHHHHHhhcCCCcEEEEE
Q 002884 526 QFPRNVFDLVHCARC----RVPWHIDG------GKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~----alhw~~D~------~~vL~Ei~RVLKPGG~Lv~S 568 (870)
-|..+.-|+|+|-.+ .+|-.... ..+|.-..++|||||.|+.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 155668899999421 14422211 34566678999999999964
No 447
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=78.46 E-value=0.8 Score=47.97 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred eeccccccccCCCCccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEecCh
Q 002884 769 IYHDWCESFSTYPRSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEP 825 (870)
Q Consensus 769 ~~h~wce~f~tyPrtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~ 825 (870)
..|+.++ ..+.+.-||+|-|-+||-.... -....||--+-+.|+|||++++-...
T Consensus 123 ~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 123 RRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp EE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred EecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 3566666 4555689999999999886643 23456888999999999999997543
No 448
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=78.45 E-value=1.4 Score=49.07 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=78.4
Q ss_pred ccccccccchhH-HhhhcCCC-----eEEEEeccCCCCCChhHHHhhCccceec---cccccccCCC---Cccchhhhhc
Q 002884 724 NVMDMRAVYGGF-AAALKDLQ-----VWVMNVVNVNSPDTLPIIYERGLFGIYH---DWCESFSTYP---RSYDLLHADH 791 (870)
Q Consensus 724 nvmDm~ag~Ggf-aaaL~~~~-----vwvmNvvp~~~~~tl~~i~eRGlig~~h---~wce~f~tyP---rtyDllHa~~ 791 (870)
.||||-||.|=- =-+|.+.+ |.+--..|..-..-...|.+|||-++.. .=|=....|- -.++|+-..|
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsG 217 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSG 217 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEec
Confidence 499999998732 01122222 2222223332234456899999977633 3343344453 4578988999
Q ss_pred ccccccCCcChhhHHHhhhhcccCCcEEEEecChh--hHHHHHHHHHc----CCceEEEe
Q 002884 792 LFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDEPS--AVTEVENFLKS----LHWEILFA 845 (870)
Q Consensus 792 lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~~~--~~~~~~~~~~~----l~W~~~~~ 845 (870)
||-+..+.-.+..-|-=+-++|.|||++|++..+- -++.|..++.+ --|-++..
T Consensus 218 L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 218 LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 99988776666667888999999999999997442 24556666655 36887754
No 449
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=78.33 E-value=21 Score=42.55 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCCCEEEEECCCCchhHHH----Hhc----CCEEEEeCChhhHHHHHHHHHHHcCCCc--EEEEcCcccCC-----CCCC
Q 002884 466 KYTRVSLDVGCGVASFGGY----LFE----RDVLTMSFAPKDEHDAQIQFALERGIPA--ISAVMGTKRLQ-----FPRN 530 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~----La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~--~~~v~dae~LP-----fpd~ 530 (870)
.+..+|+|-.||+|++... +.+ ..+.|.++.+.....+...... +|+.. .....+...-| ...+
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~~~dtl~~~~~~~~~~~~ 263 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIRHGDTLSNPKHDDKDDKG 263 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCccccccccccccCCcccccCCcc
Confidence 3566999999999975433 322 2489999988877776654443 44442 22222322222 2346
Q ss_pred ceeEEEecccc--cccccC----------------------hHHHHHHHHhhcCCCcEEEEE
Q 002884 531 VFDLVHCARCR--VPWHID----------------------GGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 531 SFDlV~Ss~~a--lhw~~D----------------------~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.||+|+++.-. ..|... ...++..+.+.|+|||...+.
T Consensus 264 ~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 264 KFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 79999986321 122211 136789999999999865554
No 450
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=78.27 E-value=1.4 Score=47.76 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=64.7
Q ss_pred ccccccccccccccccchhHHhhhcC----CC-eEEEEeccCCCCCChhHHHhhCc---cceec-cccc-ccc-CCCCcc
Q 002884 716 GINWSNVRNVMDMRAVYGGFAAALKD----LQ-VWVMNVVNVNSPDTLPIIYERGL---FGIYH-DWCE-SFS-TYPRSY 784 (870)
Q Consensus 716 gi~W~~~RnvmDm~ag~GgfaaaL~~----~~-vwvmNvvp~~~~~tl~~i~eRGl---ig~~h-~wce-~f~-tyPrty 784 (870)
++.-+.. |++.|.|.|++..+|.. .| |+..=+=.--......-+..-|| +-+.| |.|+ -|. .....+
T Consensus 37 ~i~pG~~--VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 37 DIRPGSR--VLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp T--TT-E--EEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred CCCCCCE--EEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 3444444 99999999999999974 23 44332211001112222334454 45666 8995 452 123566
Q ss_pred chhhhhcccccccCCcChhhHHHhhhhcc-cCCcEEEEe-cChhhHHHHHHHHHcCCceEE
Q 002884 785 DLLHADHLFSQLKNRCKLVPVMAEVDRIV-RPGGKLIVR-DEPSAVTEVENFLKSLHWEIL 843 (870)
Q Consensus 785 DllHa~~lfS~~~~rc~~~~vl~EmDRIL-RPgG~~iir-d~~~~~~~~~~~~~~l~W~~~ 843 (870)
|.| |-.+. ..-.+|--+-++| ||||.+.+= -..+-+.++-..++...|.-.
T Consensus 115 Dav-----fLDlp---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 115 DAV-----FLDLP---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEE-----EEESS---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred cEE-----EEeCC---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence 654 43332 2346888889999 999998754 445556666666777788654
No 451
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=77.91 E-value=1.4 Score=49.06 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=80.9
Q ss_pred hcchhhhhcCCeee--cCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHH-HHhcC---CEEEEeCC
Q 002884 423 GHQNWVRVTGEIIT--FPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGG-YLFER---DVLTMSFA 496 (870)
Q Consensus 423 ~~qnWv~~~Ge~~~--FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~-~La~r---~VtgVDiS 496 (870)
+...|+.+..+.+. |..--+||++|...=-.++..... .+..|+|+=+|.|.|+. .|..+ .|.++|..
T Consensus 154 Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc------~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwN 227 (351)
T KOG1227|consen 154 GDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWN 227 (351)
T ss_pred ccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc------ccchhhhhhcccceEEeehhhccCccEEEEEecC
Confidence 34446555444444 555567888887543333333322 35899999999999987 55443 89999999
Q ss_pred hhhHHHHHHHHHHHcCCC-cEEEEcCcccCCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcE-EE
Q 002884 497 PKDEHDAQIQFALERGIP-AISAVMGTKRLQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGY-FV 566 (870)
Q Consensus 497 p~ml~~A~vq~A~ergl~-~~~~v~dae~LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~-Lv 566 (870)
|..+.. ..+.+...++. ....+.++.+.+-++...|-|... +++-. ..-.--+..+|||.|- ++
T Consensus 228 p~svEa-LrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG--LlPSs---e~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 228 PWSVEA-LRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG--LLPSS---EQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred HHHHHH-HHHHHHhcchHHHHHhhhccccccCccccchheeec--ccccc---ccchHHHHHHhhhcCCcEE
Confidence 976543 33444444332 223344567778888888988764 24432 2333345678888554 44
No 452
>PLN02823 spermine synthase
Probab=77.86 E-value=4.8 Score=45.65 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=55.5
Q ss_pred cccccccccccchhHHhhhcCC-CeEEEEeccCCCCCChhHHHhh----------Cccceecccccccc-CCCCccchhh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDL-QVWVMNVVNVNSPDTLPIIYER----------GLFGIYHDWCESFS-TYPRSYDLLH 788 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~-~vwvmNvvp~~~~~tl~~i~eR----------Glig~~h~wce~f~-tyPrtyDllH 788 (870)
..++||-||+|.|+.++.+.+. ++--+-+|.+|. ..+.++.+. --+-++.+=+-.|. .-++.||+|=
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~-~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ-EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH-HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4689999999999999988775 454344455443 222222221 11222322112222 2247899988
Q ss_pred hhccccccc-CCcC--h-hhHHH-hhhhcccCCcEEEEe
Q 002884 789 ADHLFSQLK-NRCK--L-VPVMA-EVDRIVRPGGKLIVR 822 (870)
Q Consensus 789 a~~lfS~~~-~rc~--~-~~vl~-EmDRILRPgG~~iir 822 (870)
.| ++.-.. ..|. . ...+. .+-|.|+|||.+++.
T Consensus 182 ~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 76 332111 1121 1 12344 678999999999875
No 453
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.57 E-value=7.2 Score=42.38 Aligned_cols=115 Identities=22% Similarity=0.293 Sum_probs=66.3
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHhhCccceeccccccccCCC----Cccchhhhhccccccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYERGLFGIYHDWCESFSTYP----RSYDLLHADHLFSQLK 797 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~eRGlig~~h~wce~f~tyP----rtyDllHa~~lfS~~~ 797 (870)
|.+||+||-+|||--.|.+++. -=|..+|-. ++|.-=+....==+.+.=+-...-.| .-.|++-++==|-
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI--- 155 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI--- 155 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh---
Confidence 6799999999999999988854 222333322 44322222111111111111111111 1234444432222
Q ss_pred CCcChhhHHHhhhhcccCCcEEEEe-------------------cC---hhhHHHHHHHHHcCCceEEEe
Q 002884 798 NRCKLVPVMAEVDRIVRPGGKLIVR-------------------DE---PSAVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 798 ~rc~~~~vl~EmDRILRPgG~~iir-------------------d~---~~~~~~~~~~~~~l~W~~~~~ 845 (870)
++..||-.|..+|.|+|.++.- |+ ..++.++...+..+.|.+.-.
T Consensus 156 ---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 156 ---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3446888999999999888866 32 355789999999999998643
No 454
>PRK11524 putative methyltransferase; Provisional
Probab=77.46 E-value=3 Score=45.74 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCCCCceeEEEecccc-c--c-------cc-----cChHHHHHHHHhhcCCCcEEEEE
Q 002884 526 QFPRNVFDLVHCARCR-V--P-------WH-----IDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 526 Pfpd~SFDlV~Ss~~a-l--h-------w~-----~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
.+++++||+|++..-. + . |. .-...+|.++.|+|||||.|++.
T Consensus 22 ~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 22 KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3567899999995310 0 0 00 00146899999999999999986
No 455
>PRK13699 putative methylase; Provisional
Probab=77.38 E-value=4.9 Score=42.95 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=34.5
Q ss_pred hhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE--ee-----------cCCCceEEEEEeC
Q 002884 803 VPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF--AF-----------SKDQEGVLSAQKG 859 (870)
Q Consensus 803 ~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~--~~-----------~~~~e~iL~~~K~ 859 (870)
..++.|+.|||+|||.+|+--....+..+..++....|.+.- .- ....|.++++.|.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 468999999999999998632222233444455555565431 11 1124667777774
No 456
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=77.18 E-value=0.7 Score=42.46 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=34.2
Q ss_pred ccccccchhHHhhhcCC----C-eEEEEeccCCC-CCChhHHHhhCccceecccccc----ccCCC-Cccchhhhhcccc
Q 002884 726 MDMRAVYGGFAAALKDL----Q-VWVMNVVNVNS-PDTLPIIYERGLFGIYHDWCES----FSTYP-RSYDLLHADHLFS 794 (870)
Q Consensus 726 mDm~ag~GgfaaaL~~~----~-vwvmNvvp~~~-~~tl~~i~eRGlig~~h~wce~----f~tyP-rtyDllHa~~lfS 794 (870)
|.+|+..|..+..|.+. + ..+..|=+-.. .....++...|+-..++-++.. +..++ +.|||||-||-=+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 45787788877666542 3 13334444332 1333344445665545433333 33555 8999998866321
Q ss_pred cccCCcChhhHHHhhhhcccCCcEEEEec
Q 002884 795 QLKNRCKLVPVMAEVDRIVRPGGKLIVRD 823 (870)
Q Consensus 795 ~~~~rc~~~~vl~EmDRILRPgG~~iird 823 (870)
......-|..+-+.|+|||.+++-|
T Consensus 81 ----~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 ----YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1233345667778899999999876
No 457
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=77.13 E-value=2.6 Score=48.23 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=61.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh----hCc--cceeccccccccC-CCCccchhhhhcccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE----RGL--FGIYHDWCESFST-YPRSYDLLHADHLFS 794 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e----RGl--ig~~h~wce~f~t-yPrtyDllHa~~lfS 794 (870)
+.|||++||+|.|+.+|+..+- .|+-++.. ..+..+.+ .|+ +-+++.=.+.+.. .-..||+|-.|
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D---- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN---- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC----
Confidence 4699999999999999987653 45555543 34433332 233 2233311122211 11347776553
Q ss_pred cccCCcCh-hhHHHhhhhcccCCcEEEEecChhhHHHHHHHHHcCCceEEE
Q 002884 795 QLKNRCKL-VPVMAEVDRIVRPGGKLIVRDEPSAVTEVENFLKSLHWEILF 844 (870)
Q Consensus 795 ~~~~rc~~-~~vl~EmDRILRPgG~~iird~~~~~~~~~~~~~~l~W~~~~ 844 (870)
-.|..+ ..++-.+. -|+|++.++++-....+.+--.++ -.|++..
T Consensus 308 --PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L--~gy~l~~ 353 (374)
T TIGR02085 308 --PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL--SGYQIER 353 (374)
T ss_pred --CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh--cCceEEE
Confidence 123332 23433333 479999999997776665544444 4688764
No 458
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=76.21 E-value=13 Score=45.53 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=38.3
Q ss_pred CceeEEEecccccccc-cCh--HHHHHHHHhhcCCCcEEEEEECCCcCchhHHHHHHHhhcccccccchhHHHHHHHHHh
Q 002884 530 NVFDLVHCARCRVPWH-IDG--GKLLLELNRVLRPGGYFVWSATPVYQKLGEDVEIWNAMSNLTVSMCWELVTIKMDKLN 606 (870)
Q Consensus 530 ~SFDlV~Ss~~alhw~-~D~--~~vL~Ei~RVLKPGG~Lv~S~~p~~~tL~El~~~w~~~~~la~~mcW~~va~~~~~L~ 606 (870)
..||+|+.-.. -+-. ++. ..+|..|.|+++|||.|+-.+. .......|.
T Consensus 165 ~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~---------------------------a~~vr~~l~ 216 (662)
T PRK01747 165 ARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFTS---------------------------AGFVRRGLQ 216 (662)
T ss_pred ccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEeeh---------------------------HHHHHHHHH
Confidence 56999997421 1111 111 6899999999999999984310 113456788
Q ss_pred hccceEEE
Q 002884 607 SAGFAIYR 614 (870)
Q Consensus 607 daGfaI~r 614 (870)
.+||.|.+
T Consensus 217 ~~GF~v~~ 224 (662)
T PRK01747 217 EAGFTVRK 224 (662)
T ss_pred HcCCeeee
Confidence 89998876
No 459
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=76.01 E-value=11 Score=40.08 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=47.6
Q ss_pred CCCEEEEECCCCchhHHHHh--------cCCEEEEeCChhhHHHHHHHHHHHc--CCCcEEEEcCcccCC--------C-
Q 002884 467 YTRVSLDVGCGVASFGGYLF--------ERDVLTMSFAPKDEHDAQIQFALER--GIPAISAVMGTKRLQ--------F- 527 (870)
Q Consensus 467 ~~~~VLDIGCGtG~~a~~La--------~r~VtgVDiSp~ml~~A~vq~A~er--gl~~~~~v~dae~LP--------f- 527 (870)
++..|+++|.-.|.-+..++ ..+|+|+|+......... .+. -.+.+.++.+...-+ .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a----~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA----IESHPMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G----GGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH----HhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence 57899999999986444332 248999999654332211 111 013344555432111 1
Q ss_pred CCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 528 PRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 528 pd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
......+|+-- +-|-+.+....|.-...+|+||+|+++.+
T Consensus 108 ~~~~~vlVilD--s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 108 SPPHPVLVILD--SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ---SSEEEEES--S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ccCCceEEEEC--CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 12334566643 24656777888888999999999999864
No 460
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=75.44 E-value=3.8 Score=44.23 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=78.1
Q ss_pred cccccccccccchhHHhhhcCCC-eEEEEeccCCCCCChhHHH----------hhCccceecccccc-ccCCCC-ccchh
Q 002884 721 NVRNVMDMRAVYGGFAAALKDLQ-VWVMNVVNVNSPDTLPIIY----------ERGLFGIYHDWCES-FSTYPR-SYDLL 787 (870)
Q Consensus 721 ~~RnvmDm~ag~GgfaaaL~~~~-vwvmNvvp~~~~~tl~~i~----------eRGlig~~h~wce~-f~tyPr-tyDll 787 (870)
..++||=+|.|-||.++.|.+.+ +--+-+|.+|.. -+.+.. +-.-+-++++-+-. +...++ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~-Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE-VVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH-HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH-HHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 57999999999999999999876 433345555532 111111 11123344433322 345676 99997
Q ss_pred hhhcccccccC--CcChhhHHHhhhhcccCCcEEEEec-----ChhhHHHHHHHHHcCCceEEEee------cCCCceEE
Q 002884 788 HADHLFSQLKN--RCKLVPVMAEVDRIVRPGGKLIVRD-----EPSAVTEVENFLKSLHWEILFAF------SKDQEGVL 854 (870)
Q Consensus 788 Ha~~lfS~~~~--rc~~~~vl~EmDRILRPgG~~iird-----~~~~~~~~~~~~~~l~W~~~~~~------~~~~e~iL 854 (870)
=.+- +.-... ..--...+-.+-|+|+|||.+++.- ....+..+...+++..-.+.... ...--.++
T Consensus 155 i~D~-~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~ 233 (246)
T PF01564_consen 155 IVDL-TDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFA 233 (246)
T ss_dssp EEES-SSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEE
T ss_pred EEeC-CCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEE
Confidence 5422 221100 0111357788999999999999873 33455666677777777665431 11223467
Q ss_pred EEEeCC
Q 002884 855 SAQKGN 860 (870)
Q Consensus 855 ~~~K~~ 860 (870)
++.|..
T Consensus 234 ~~s~~~ 239 (246)
T PF01564_consen 234 SASKDI 239 (246)
T ss_dssp EEESST
T ss_pred EEeCCC
Confidence 777654
No 461
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=74.37 E-value=14 Score=40.31 Aligned_cols=100 Identities=19% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCEEEEECCCCchhHHHHhc---CCEEEEeCChhhHHHHHH-----HHHHHcCCCcEEE--EcCc-ccCCCCCCc-eeEE
Q 002884 468 TRVSLDVGCGVASFGGYLFE---RDVLTMSFAPKDEHDAQI-----QFALERGIPAISA--VMGT-KRLQFPRNV-FDLV 535 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~---r~VtgVDiSp~ml~~A~v-----q~A~ergl~~~~~--v~da-e~LPfpd~S-FDlV 535 (870)
...||++|.|+|..+...+. ..|+..|+......-... ......|...... ..+. ...-+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 56899999999965544433 366666665443221111 0111222222221 2221 111111122 9999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
+++.|.++ ......++.-+.-.|-.+|..++.
T Consensus 167 lasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 167 LASDVVYE-EESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEeeeeec-CCcchhHHHHHHHHHhcCCeEEEE
Confidence 99987443 233477888888888889966665
No 462
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=73.88 E-value=14 Score=41.07 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCCEEEEECCCC-chhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC--CCCCCceeEEEeccc
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL--QFPRNVFDLVHCARC 540 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L--Pfpd~SFDlV~Ss~~ 540 (870)
++.+||-+|||. |.++..+++. +|++++.+.. ...+.+++++.|... .......+ ......||+|+-...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~--~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDP--PDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC
Confidence 567899999864 4555555543 7888876310 011345566666532 11111110 001245899986421
Q ss_pred ccccccChHHHHHHHHhhcCCCcEEEEEEC
Q 002884 541 RVPWHIDGGKLLLELNRVLRPGGYFVWSAT 570 (870)
Q Consensus 541 alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~ 570 (870)
....+.++.++|++||.+++.+.
T Consensus 248 -------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -------CHHHHHHHHHHccCCcEEEEEec
Confidence 23478889999999999987643
No 463
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=73.49 E-value=18 Score=40.08 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=53.9
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
.++.+||-.|+|. |.++..+++. .|++++.++. ..+++++.|....+. .... ..+.+|+++-...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~-----~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~- 232 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA-----ARRLALALGAASAGG---AYDT--PPEPLDAAILFAP- 232 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHhCCceecc---cccc--CcccceEEEECCC-
Confidence 4578999999753 3344445443 6888888775 335666667543221 1111 1235887664311
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
....+....++|++||.+++.+
T Consensus 233 ------~~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 233 ------AGGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ------cHHHHHHHHHhhCCCcEEEEEe
Confidence 1357888999999999999874
No 464
>PTZ00357 methyltransferase; Provisional
Probab=73.41 E-value=18 Score=44.74 Aligned_cols=96 Identities=10% Similarity=0.055 Sum_probs=55.6
Q ss_pred CEEEEECCCCchhHHHHhcC--------CEEEEeCChhhHHHHHHHHHHHcCCC---------cEEEEcCcccCCCC---
Q 002884 469 RVSLDVGCGVASFGGYLFER--------DVLTMSFAPKDEHDAQIQFALERGIP---------AISAVMGTKRLQFP--- 528 (870)
Q Consensus 469 ~~VLDIGCGtG~~a~~La~r--------~VtgVDiSp~ml~~A~vq~A~ergl~---------~~~~v~dae~LPfp--- 528 (870)
-.|+-+|+|-|-+....++. +|++|+-+|........+........ +.++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999655443321 78999988653322222222211221 22333344444222
Q ss_pred --------CCceeEEEecccccccccC-h-HHHHHHHHhhcCC----CcEE
Q 002884 529 --------RNVFDLVHCARCRVPWHID-G-GKLLLELNRVLRP----GGYF 565 (870)
Q Consensus 529 --------d~SFDlV~Ss~~alhw~~D-~-~~vL~Ei~RVLKP----GG~L 565 (870)
-+.+|+|||-+ +=.|-.+ + +.+|..+.|.||+ +|++
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGIl 831 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGIA 831 (1072)
T ss_pred ccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhccccccc
Confidence 24699999842 2223333 3 7999999999987 8863
No 465
>KOG2730 consensus Methylase [General function prediction only]
Probab=72.97 E-value=6.1 Score=42.58 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=44.4
Q ss_pred CCEEEEECCCCchhHHHHhcC--CEEEEeCChhhHHHHHHHHHHHcCCCc-EEEEcCc-----ccCCCCCCceeEEEec
Q 002884 468 TRVSLDVGCGVASFGGYLFER--DVLTMSFAPKDEHDAQIQFALERGIPA-ISAVMGT-----KRLQFPRNVFDLVHCA 538 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r--~VtgVDiSp~ml~~A~vq~A~ergl~~-~~~v~da-----e~LPfpd~SFDlV~Ss 538 (870)
...|+|.-||.|..+..++.. .|++||++|.-+.-|. ..+.-.|++. +.+++++ ..|-+...-+|+|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 568999988888766555544 8999999998655544 3444457764 4455553 3344444445566554
No 466
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=71.67 E-value=19 Score=36.79 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=56.8
Q ss_pred ECCCCchhHHHHhcC-----CEEEEeCChhhHHH-------HHHHHHHHcCCCcEEEEcCcccC----CCCCCceeEEEe
Q 002884 474 VGCGVASFGGYLFER-----DVLTMSFAPKDEHD-------AQIQFALERGIPAISAVMGTKRL----QFPRNVFDLVHC 537 (870)
Q Consensus 474 IGCGtG~~a~~La~r-----~VtgVDiSp~ml~~-------A~vq~A~ergl~~~~~v~dae~L----Pfpd~SFDlV~S 537 (870)
||=|.=+|+..|+.. ++++..+.....-. ..++..+..|..+...+ |+..| .+....||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~V-Dat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGV-DATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCC-CCCcccccccccCCcCCEEEE
Confidence 566666788888764 67777766543211 12222334555433333 33333 346788999998
Q ss_pred ccccccccc------C---------hHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHI------D---------GGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~------D---------~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
++ ++.- . ...+|..+.++|+++|.+.++-
T Consensus 82 NF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 74 4332 0 1467888999999999999983
No 467
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=70.83 E-value=18 Score=41.80 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCEEEEECCCCchhH-HHHhc----CCEEEEeCChhhHHHHHHHHHHHcCCCc--EE-EEcCcccC-CCCCCceeEEEec
Q 002884 468 TRVSLDVGCGVASFG-GYLFE----RDVLTMSFAPKDEHDAQIQFALERGIPA--IS-AVMGTKRL-QFPRNVFDLVHCA 538 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a-~~La~----r~VtgVDiSp~ml~~A~vq~A~ergl~~--~~-~v~dae~L-Pfpd~SFDlV~Ss 538 (870)
.-+|||.=+|+|.=+ ++..+ ..|++-|+++..+...+ +.+...++.. +. ...++..+ ......||+|-.-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~-~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK-RNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH-HHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH-HhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 458999999999533 33333 27899999998776655 4455566655 22 33344332 2356789999753
Q ss_pred ccccccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 539 RCRVPWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 539 ~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
. | --+..+|.-+.+.+|.||+|.++.+.
T Consensus 129 P----f-GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 P----F-GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -----S-S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred C----C-CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 2 2 23568899999999999999999654
No 468
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=70.82 E-value=1.6 Score=47.21 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=26.7
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE 763 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e 763 (870)
.+|+|+|||.|.++.+|...+. .|+-++-. ..+..+.+
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRD 69 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHH
Confidence 6799999999999999998753 34444443 44444444
No 469
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=70.62 E-value=8.9 Score=45.93 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCCEEEEECCCCc-hhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcC---------ccc---------
Q 002884 467 YTRVSLDVGCGVA-SFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMG---------TKR--------- 524 (870)
Q Consensus 467 ~~~~VLDIGCGtG-~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~d---------ae~--------- 524 (870)
++.+||=+|||.- ..+..++. ..|+++|..+.-+ +.++..|...+..-.. ...
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rl-----e~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVK-----EQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 5689999999974 44444443 2788999988632 3344444322111100 000
Q ss_pred ---CCCCCCceeEEEecccccccccChHHHHHHHHhhcCCCcEEE
Q 002884 525 ---LQFPRNVFDLVHCARCRVPWHIDGGKLLLELNRVLRPGGYFV 566 (870)
Q Consensus 525 ---LPfpd~SFDlV~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv 566 (870)
++-.-..+|+|++. ++++-...+.-+.+++.+.+|||++++
T Consensus 238 ~~~~~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 238 MELFAAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 11112459999986 345554445568889999999999988
No 470
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.48 E-value=2.1 Score=45.55 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=50.5
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCCCChhH-----HHhhCc--cceeccccccccCCC--Cccchhhhhccc
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSPDTLPI-----IYERGL--FGIYHDWCESFSTYP--RSYDLLHADHLF 793 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~~tl~~-----i~eRGl--ig~~h~wce~f~tyP--rtyDllHa~~lf 793 (870)
-.||++|||.|=-||-|.+.-= .|+-++.-.+|-- .-.-|+ +.+.| ..-.--|| ..||.|+...-+
T Consensus 74 ~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~--gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRH--GDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEE--CCcccCCCCCCCcCEEEEeecc
Confidence 3599999999977777766522 3333333333332 333455 44444 22334455 579998874433
Q ss_pred ccccCCcChhhHHHhhhhcccCCcEEEEe
Q 002884 794 SQLKNRCKLVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 794 S~~~~rc~~~~vl~EmDRILRPgG~~iir 822 (870)
. .+..-|+| =|+|||.+|+=
T Consensus 149 ~------~vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 149 P------EVPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred C------CCCHHHHH---hcccCCEEEEE
Confidence 3 23345554 69999999875
No 471
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=70.25 E-value=3.3 Score=44.45 Aligned_cols=117 Identities=8% Similarity=0.044 Sum_probs=67.6
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHHh-hCcc--------------ceeccccccccCCC------
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIYE-RGLF--------------GIYHDWCESFSTYP------ 781 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~e-RGli--------------g~~h~wce~f~tyP------ 781 (870)
-||+.|||-|==+..|+++|. .|+-+|-. .-+...+. .|+. +-+.-+|.-|-.++
T Consensus 46 rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred eEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 589999999999999999976 34444433 22222211 1111 11223555555553
Q ss_pred CccchhhhhcccccccCCcChhhHHHhhhhcccCCcEEEEe----cC-----hh--hHHHHHHHHHcCCceEEEe
Q 002884 782 RSYDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR----DE-----PS--AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 782 rtyDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir----d~-----~~--~~~~~~~~~~~l~W~~~~~ 845 (870)
..||+|-=-+.|-.+.. -....+..-|-++|||||.+++= +. +- ....|+.++. =.|++...
T Consensus 123 ~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~-~~~~i~~l 195 (226)
T PRK13256 123 PVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFS-AKIKFELI 195 (226)
T ss_pred CCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhcc-CCceEEEe
Confidence 36888654444444422 23447889999999999987643 11 11 1356666664 34565443
No 472
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=69.76 E-value=1.6 Score=41.95 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=27.6
Q ss_pred cChhhHHHhhhhcccCCcEEEEecC--------hhhHHHHHHHHHcCCce
Q 002884 800 CKLVPVMAEVDRIVRPGGKLIVRDE--------PSAVTEVENFLKSLHWE 841 (870)
Q Consensus 800 c~~~~vl~EmDRILRPgG~~iird~--------~~~~~~~~~~~~~l~W~ 841 (870)
..+..++--|-++|||||.||+--. ......+..-+++|+|+
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lr 70 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLR 70 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEC
Confidence 4577788999999999999999832 23346666777777764
No 473
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=69.18 E-value=23 Score=39.16 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=34.9
Q ss_pred ChhhHHHhhhhcccCCcEEEEe--------cC-------hh-hHHHHHHHHHcCCceEEEe
Q 002884 801 KLVPVMAEVDRIVRPGGKLIVR--------DE-------PS-AVTEVENFLKSLHWEILFA 845 (870)
Q Consensus 801 ~~~~vl~EmDRILRPgG~~iir--------d~-------~~-~~~~~~~~~~~l~W~~~~~ 845 (870)
++.++|-.|.+||||||++|=- +. .+ .+++|..+++.+.|++...
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 3558999999999999977743 21 11 1699999999999999754
No 474
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=68.91 E-value=23 Score=38.46 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCCCEEEEECCC-CchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 466 KYTRVSLDVGCG-VASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 466 ~~~~~VLDIGCG-tG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
..+.+||-+||| .|..+..++.. .|++++.+.... ..+...+....+.........-..+.+|+|+...
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 233 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKR-----ELARKLGADEVVDSGAELDEQAAAGGADVILVTV-- 233 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--
Confidence 456789999986 55555555543 778887776532 3333444322211111100000124589998641
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ....+.++.+.|+++|.++..+
T Consensus 234 ~-----~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 V-----SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred C-----cHHHHHHHHHhcccCCEEEEEC
Confidence 1 2357888899999999999763
No 475
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.90 E-value=17 Score=39.11 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=53.8
Q ss_pred CCCEEEEECCCC-chhHHHHhcC---C-EEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc----ccCCCCCCceeEEEe
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER---D-VLTMSFAPKDEHDAQIQFALERGIPAISAVMGT----KRLQFPRNVFDLVHC 537 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r---~-VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da----e~LPfpd~SFDlV~S 537 (870)
++.+||=+|+|. |.++..+++. . |++++.++. +.+.+++.|....+..... ..+ .....+|+|+-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid 193 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD-----RRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALE 193 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEE
Confidence 577899998763 4444445443 4 888887765 3345556665322111110 011 12235899986
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
.. -....+..+.++|+|+|.+++..
T Consensus 194 ~~-------G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 194 FS-------GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CC-------CChHHHHHHHHHhcCCCEEEEec
Confidence 42 12457888899999999999874
No 476
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.36 E-value=7.1 Score=41.61 Aligned_cols=141 Identities=17% Similarity=0.339 Sum_probs=100.0
Q ss_pred HHHHhhcc---cccceeeeccc---cccccccccccccccchhHHhhhcCC---C-eEEEEeccCCCCCChhHHHhhC-c
Q 002884 698 RDYKHWRY---VVSTSYMSGLG---INWSNVRNVMDMRAVYGGFAAALKDL---Q-VWVMNVVNVNSPDTLPIIYERG-L 766 (870)
Q Consensus 698 ~dye~W~~---~V~~TY~~~Lg---i~W~~~RnvmDm~ag~GgfaaaL~~~---~-vwvmNvvp~~~~~tl~~i~eRG-l 766 (870)
+.|+.|.- .+.+..+.+|. +.-+ --||=+||-.|.-..++.+- | |..+-++|.-...-|.++-+|- +
T Consensus 49 ~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g--~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni 126 (231)
T COG1889 49 EEYREWNPRRSKLAAAILKGLKNFPIKEG--SKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI 126 (231)
T ss_pred cceeeeCcchhHHHHHHHcCcccCCcCCC--CEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc
Confidence 35666643 45444444332 3333 23999999999999888764 5 6888899988888888888886 8
Q ss_pred cceeccccccccCCCCccchh--hhhcccccccCCcChhhHHHhhhhcccCCcEEEEe----------cChhhHHHHHHH
Q 002884 767 FGIYHDWCESFSTYPRSYDLL--HADHLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVR----------DEPSAVTEVENF 834 (870)
Q Consensus 767 ig~~h~wce~f~tyPrtyDll--Ha~~lfS~~~~rc~~~~vl~EmDRILRPgG~~iir----------d~~~~~~~~~~~ 834 (870)
+.++.| -.+|.+|-.+ |.|-+|...-++-...-+..-++.-|++||++++. |+..+...-...
T Consensus 127 ~PIL~D-----A~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~k 201 (231)
T COG1889 127 IPILED-----ARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEK 201 (231)
T ss_pred eeeecc-----cCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHH
Confidence 888877 4677777764 67778887777777788888999999999999887 445555544444
Q ss_pred HHcCCceEEEe
Q 002884 835 LKSLHWEILFA 845 (870)
Q Consensus 835 ~~~l~W~~~~~ 845 (870)
+..=..++.-.
T Consensus 202 L~~~~f~i~e~ 212 (231)
T COG1889 202 LEEGGFEILEV 212 (231)
T ss_pred HHhcCceeeEE
Confidence 55555665433
No 477
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.06 E-value=23 Score=39.46 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=54.2
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc---ccC-C-CCCCceeEE
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT---KRL-Q-FPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da---e~L-P-fpd~SFDlV 535 (870)
.++.+||-+|||. |.++..+++. .|++++.++. +.+++++.|....+..... ..+ . .....+|+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~-----~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR-----KLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH-----HHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 4578999998753 4444445443 4888888775 3455556665322111110 000 0 122358999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+-.. . ....+....+.|++||.+++.+
T Consensus 250 id~~---g----~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 250 IDAV---G----RPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EECC---C----CHHHHHHHHHHhccCCEEEEEC
Confidence 8631 1 1356778889999999999874
No 478
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=67.74 E-value=13 Score=43.38 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=52.3
Q ss_pred CCCEEEEECCCC-chhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEeccccc
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCRV 542 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~al 542 (870)
.+.+|+=+|||. |.....+++ .+|+++|.++.- ...|...|... ... .+.+ ..+|+|+...
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R-----~~~A~~~G~~~--~~~-~e~v----~~aDVVI~at--- 265 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPIC-----ALQAAMEGYEV--MTM-EEAV----KEGDIFVTTT--- 265 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhh-----HHHHHhcCCEE--ccH-HHHH----cCCCEEEECC---
Confidence 578999999996 544443333 389999998863 23444555421 111 1111 2479998742
Q ss_pred ccccChHHHHHH-HHhhcCCCcEEEEEE
Q 002884 543 PWHIDGGKLLLE-LNRVLRPGGYFVWSA 569 (870)
Q Consensus 543 hw~~D~~~vL~E-i~RVLKPGG~Lv~S~ 569 (870)
....++.. ..+.+|+||+++..+
T Consensus 266 ----G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 ----GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 12345554 589999999998874
No 479
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.32 E-value=28 Score=37.82 Aligned_cols=90 Identities=20% Similarity=0.097 Sum_probs=53.2
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC---C-EEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc-cc----CCCCCCceeEE
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER---D-VLTMSFAPKDEHDAQIQFALERGIPAISAVMGT-KR----LQFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r---~-VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da-e~----LPfpd~SFDlV 535 (870)
.++.+||-+|+|. |..+..+++. . |++++.++... .++.+.+.. ..+... .. .......+|+|
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-----~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKL-----ELAKKLGAT--ETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-----HHHHHhCCe--EEecCCCCCHHHHHHhcCCCCcEE
Confidence 4577999998652 4444444443 4 77777776532 334445543 122111 11 01134569999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+... .....+.++.++|+++|.|+..+
T Consensus 231 ~~~~-------~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 231 IEAT-------GVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EECC-------CChHHHHHHHHHHhcCCEEEEEe
Confidence 8742 12467888999999999998753
No 480
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=67.16 E-value=15 Score=42.12 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=41.1
Q ss_pred cCCeeecCCCCccccccHHHHHHHHHHHhhhhhcCCCCCEEEEECCCCchhHHHHhcC------------CEEEEeCChh
Q 002884 431 TGEIITFPGGGTQFIHGALHYIDFIQQAVPKIAWGKYTRVSLDVGCGVASFGGYLFER------------DVLTMSFAPK 498 (870)
Q Consensus 431 ~Ge~~~FPgggt~F~~gA~~Yid~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a~~La~r------------~VtgVDiSp~ 498 (870)
.||.+.-|.=+.+|......+. .+.+..+. ......+++||.|.|.++..|++. .+..|++|+.
T Consensus 45 ~GDFiTApels~lFGella~~~---~~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 45 KGDFITAPELSQLFGELLAEQF---LQLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred cCCeeechhHHHHHHHHHHHHH---HHHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 4566666666666655443322 22222211 123567999999999888766542 7889999997
Q ss_pred hH
Q 002884 499 DE 500 (870)
Q Consensus 499 ml 500 (870)
..
T Consensus 121 L~ 122 (370)
T COG1565 121 LR 122 (370)
T ss_pred HH
Confidence 43
No 481
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.96 E-value=23 Score=36.55 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=54.2
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc---ccC-CCCCCceeEEEe
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT---KRL-QFPRNVFDLVHC 537 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da---e~L-Pfpd~SFDlV~S 537 (870)
.++.+||.+|+|. |..+..++.. +|++++.++... +.+...+....+..... ..+ ......||+|+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKL-----ELAKELGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-----HHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 4578999999985 5555555543 788888876532 33334443211111100 000 112456999987
Q ss_pred cccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 538 ARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 538 s~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
... ....+..+.+.|+++|.++...
T Consensus 208 ~~~-------~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 208 AVG-------GPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCC-------CHHHHHHHHHhcccCCEEEEEc
Confidence 421 1256777889999999999763
No 482
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.92 E-value=8.2 Score=36.21 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=53.6
Q ss_pred CCchhHHHHhc---CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc---ccC-C-CCCCceeEEEecccccccccCh
Q 002884 477 GVASFGGYLFE---RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT---KRL-Q-FPRNVFDLVHCARCRVPWHIDG 548 (870)
Q Consensus 477 GtG~~a~~La~---r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da---e~L-P-fpd~SFDlV~Ss~~alhw~~D~ 548 (870)
|.|.++..+++ .+|++++.++. ..+++++.|.......... +.+ . .+...+|+|+-.. .-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-------g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEE-----KLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-------GS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHH-----HHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-------SS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHH-----HHHHHHhhcccccccccccccccccccccccccceEEEEec-------Cc
Confidence 34666666654 48999998886 4466777774322211111 011 1 3345799998642 13
Q ss_pred HHHHHHHHhhcCCCcEEEEEECCC
Q 002884 549 GKLLLELNRVLRPGGYFVWSATPV 572 (870)
Q Consensus 549 ~~vL~Ei~RVLKPGG~Lv~S~~p~ 572 (870)
...+.....+|+|||.+++.....
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 679999999999999999985444
No 483
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=65.85 E-value=2.6 Score=44.80 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=73.1
Q ss_pred ccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHH-HhhCccce--------------eccccccccCCC----Cc
Q 002884 724 NVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPII-YERGLFGI--------------YHDWCESFSTYP----RS 783 (870)
Q Consensus 724 nvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i-~eRGlig~--------------~h~wce~f~tyP----rt 783 (870)
-||+-|||.|=-+..|+++|. +|+-+|-. .-+.-. -++++-.. +.-+|..|-.++ ..
T Consensus 40 rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~ 116 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK 116 (218)
T ss_dssp EEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred eEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence 499999999999999999985 66666654 333333 24444111 122555565553 35
Q ss_pred cchhhhhcccccccCCcChhhHHHhhhhcccCCcEE-EEe-c--------Chhh--HHHHHHHHHcCCceEEEe
Q 002884 784 YDLLHADHLFSQLKNRCKLVPVMAEVDRIVRPGGKL-IVR-D--------EPSA--VTEVENFLKSLHWEILFA 845 (870)
Q Consensus 784 yDllHa~~lfS~~~~rc~~~~vl~EmDRILRPgG~~-iir-d--------~~~~--~~~~~~~~~~l~W~~~~~ 845 (870)
||+|.=-+.|-.+. .-....+..-|-++|+|||.+ +++ . ++.- .+.|+.++. -+|++...
T Consensus 117 fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 117 FDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp EEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEE
T ss_pred ceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEE
Confidence 88875444443332 235568999999999999993 333 1 1111 478888888 78887654
No 484
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=65.84 E-value=4.4 Score=46.94 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=66.8
Q ss_pred cccccccccchhHHhhhcCCCeEEEEeccCCCC-CChhHHH----hhCccceecc-----ccccccCCCC---ccchhhh
Q 002884 723 RNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP-DTLPIIY----ERGLFGIYHD-----WCESFSTYPR---SYDLLHA 789 (870)
Q Consensus 723 RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~-~tl~~i~----eRGlig~~h~-----wce~f~tyPr---tyDllHa 789 (870)
+.|||+=|.+|||+-+.+.-|- -.|+.+|.. .-|..+. --||-+--|. ..+-+.-+-| +||||-.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4599999999999877776654 223344554 3333332 2355443333 3333333444 9999754
Q ss_pred h---------cccccccCCcChhhHHHhhhhcccCCcEEEEecC------hhhHHHHHHHHHcC
Q 002884 790 D---------HLFSQLKNRCKLVPVMAEVDRIVRPGGKLIVRDE------PSAVTEVENFLKSL 838 (870)
Q Consensus 790 ~---------~lfS~~~~rc~~~~vl~EmDRILRPgG~~iird~------~~~~~~~~~~~~~l 838 (870)
| ++|+..+ ...+++...=+||+|||.+++.-. ...++.|..-+..+
T Consensus 297 DPPsF~r~k~~~~~~~r---dy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 297 DPPSFARSKKQEFSAQR---DYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA 357 (393)
T ss_pred CCcccccCcccchhHHH---HHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence 3 2222211 244788999999999999999843 23355566655555
No 485
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=65.81 E-value=21 Score=40.19 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCchhHHHHhcC----CEEEEeCChhhHHHHHH
Q 002884 466 KYTRVSLDVGCGVASFGGYLFER----DVLTMSFAPKDEHDAQI 505 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a~~La~r----~VtgVDiSp~ml~~A~v 505 (870)
.++..+||.=||.|..+..|++. .|+|+|.++..+..+..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~ 62 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKE 62 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 46789999999999988888764 79999999987766653
No 486
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.74 E-value=21 Score=40.01 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=54.1
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc---ccC-CCCCCceeEEE
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT---KRL-QFPRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da---e~L-Pfpd~SFDlV~ 536 (870)
.++.+||=+|+|. |.++..+++. .|++++.++. +.+++++.|....+..... ..+ ....+.+|+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED-----KLALARELGATATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH-----HHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 3567888899763 4455545442 5888888776 3345555565322111110 000 01123589998
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-.. .....+..+.++|++||.+++.+
T Consensus 265 d~~-------G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 265 EMA-------GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred ECC-------CChHHHHHHHHHHhcCCEEEEEc
Confidence 642 12357788889999999999764
No 487
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=65.23 E-value=12 Score=38.08 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=31.8
Q ss_pred HHHHHHHhhhhhcCCCCCEEEEECCCCchhH--HHHhcCCEEEEeCChhhHHHH
Q 002884 452 IDFIQQAVPKIAWGKYTRVSLDVGCGVASFG--GYLFERDVLTMSFAPKDEHDA 503 (870)
Q Consensus 452 id~L~~~Lp~i~~g~~~~~VLDIGCGtG~~a--~~La~r~VtgVDiSp~ml~~A 503 (870)
...+.+++... ..++..|||.=||+|+.+ +..+.++.+|+|+++.....|
T Consensus 178 ~~l~~~lI~~~--t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 178 VELIERLIKAS--TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHHHH--S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred HHHHHHHHHhh--hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 34444444332 346899999999999755 444567999999999866554
No 488
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=64.26 E-value=28 Score=38.03 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=52.3
Q ss_pred CCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCc--ccCCCCCCceeEEEecc
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGT--KRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~da--e~LPfpd~SFDlV~Ss~ 539 (870)
++.+||-.|||. |..+..+++. .|++++.++... ..+...+....+..... ..+......||+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-----~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-----AVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-----HHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 577888898864 4555555542 567777766533 23334444221111100 11221223499998642
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. ....+..+.+.|+++|.|+..+
T Consensus 240 g-------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 G-------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 2356888999999999999653
No 489
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=64.24 E-value=23 Score=39.48 Aligned_cols=89 Identities=10% Similarity=0.011 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCC-chhHHHHhc-----CCEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecc
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFE-----RDVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCAR 539 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~-----r~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~ 539 (870)
.++.+||-+|||. |.++..+++ .+|+++|.++.-+ ++++..+. .... . .+. ....||+|+-..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-----~~a~~~~~--~~~~-~--~~~-~~~g~d~viD~~ 230 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-----DLFSFADE--TYLI-D--DIP-EDLAVDHAFECV 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-----HHHhhcCc--eeeh-h--hhh-hccCCcEEEECC
Confidence 3578999999874 444433332 2689999887633 33333221 1111 1 111 111489998532
Q ss_pred cccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 540 CRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 540 ~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
. .......+....++|++||.+++..
T Consensus 231 G----~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 231 G----GRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred C----CCccHHHHHHHHHhCcCCcEEEEEe
Confidence 1 0112467889999999999999864
No 490
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=64.12 E-value=3 Score=47.31 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=61.4
Q ss_pred eeeeccccccc--cccccccccccchhHHhhhcCCCeEEEEeccCCCC----CChhHHHhhCccc---eeccccccccCC
Q 002884 710 SYMSGLGINWS--NVRNVMDMRAVYGGFAAALKDLQVWVMNVVNVNSP----DTLPIIYERGLFG---IYHDWCESFSTY 780 (870)
Q Consensus 710 TY~~~Lgi~W~--~~RnvmDm~ag~GgfaaaL~~~~vwvmNvvp~~~~----~tl~~i~eRGlig---~~h~wce~f~ty 780 (870)
+|...+...+. +=+.|||+|||+|-....-++.|- -.|..++.. -...+|.+-||-. +++.--|-+ --
T Consensus 47 aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~L 123 (346)
T KOG1499|consen 47 AYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-EL 123 (346)
T ss_pred HHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ec
Confidence 45544433332 235699999999976655555552 344445544 3455677777633 333333332 33
Q ss_pred C-Cccchhhh--hcccccccCCcChhhHHHhhhhcccCCcEEE
Q 002884 781 P-RSYDLLHA--DHLFSQLKNRCKLVPVMAEVDRIVRPGGKLI 820 (870)
Q Consensus 781 P-rtyDllHa--~~lfS~~~~rc~~~~vl~EmDRILRPgG~~i 820 (870)
| .-.|+|-+ .|-|-++.+ .+.-||.-=||-|.|||.++
T Consensus 124 P~eKVDiIvSEWMGy~Ll~Es--MldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 124 PVEKVDIIVSEWMGYFLLYES--MLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred CccceeEEeehhhhHHHHHhh--hhhhhhhhhhhccCCCceEc
Confidence 4 67777643 122222222 34478899999999999876
No 491
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=63.88 E-value=19 Score=39.47 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=49.6
Q ss_pred CCCEEEEECCCC-chhHHHHhcC---C-EEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCCCCceeEEEecccc
Q 002884 467 YTRVSLDVGCGV-ASFGGYLFER---D-VLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFPRNVFDLVHCARCR 541 (870)
Q Consensus 467 ~~~~VLDIGCGt-G~~a~~La~r---~-VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfpd~SFDlV~Ss~~a 541 (870)
++.+||=+|||. |.++..+++. . |+++|..+..+. .+.... +.+.... ....||+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~-----~a~~~~------~i~~~~~--~~~g~Dvvid~~G- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD-----GATGYE------VLDPEKD--PRRDYRAIYDASG- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH-----hhhhcc------ccChhhc--cCCCCCEEEECCC-
Confidence 356788889863 5666666653 3 666777665332 222211 1111110 2245899986421
Q ss_pred cccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 542 VPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 542 lhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
....+..+.++|++||.+++.+
T Consensus 210 ------~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 ------DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ------CHHHHHHHHHhhhcCcEEEEEe
Confidence 2356788899999999999874
No 492
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=63.31 E-value=29 Score=38.11 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC---C-EEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc--cC-CC-CCCceeEEE
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER---D-VLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK--RL-QF-PRNVFDLVH 536 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r---~-VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae--~L-Pf-pd~SFDlV~ 536 (870)
.++.+||=+|+|. |.++..+++. + |++++.++. +.+.+++.|....+...... .+ .+ ....||+|+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~-----~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE-----RLELAKALGADFVINSGQDDVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEE
Confidence 3578899898753 3344444442 5 888887765 33455555643221111100 01 11 233699998
Q ss_pred ecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 537 CARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 537 Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
-.. .....+....+.|+++|.+++.+
T Consensus 237 d~~-------g~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 237 ECS-------GNTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred ECC-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 642 12346677889999999999764
No 493
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=63.14 E-value=15 Score=39.55 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCEEEEECCCCchhHHHHhcC------------CEEEEeCChhhHHH
Q 002884 468 TRVSLDVGCGVASFGGYLFER------------DVLTMSFAPKDEHD 502 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~r------------~VtgVDiSp~ml~~ 502 (870)
.-+|+++|+|.|.++..+++. +++.|++||.+...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~ 65 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRER 65 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHH
Confidence 369999999999988776541 68999999986443
No 494
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=62.55 E-value=39 Score=36.87 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=55.0
Q ss_pred CCCCEEEEECC--CCchhHHHHhcC---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccC-----CCCCCceeEE
Q 002884 466 KYTRVSLDVGC--GVASFGGYLFER---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRL-----QFPRNVFDLV 535 (870)
Q Consensus 466 ~~~~~VLDIGC--GtG~~a~~La~r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~L-----Pfpd~SFDlV 535 (870)
.++.+||=.|+ |.|.++..|++. +|++++.++. ...++++.|....+.......+ ....+.+|+|
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~-----~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE-----KVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEE
Confidence 45789998885 356666666654 6777777665 3345555665332211111010 1123469999
Q ss_pred EecccccccccChHHHHHHHHhhcCCCcEEEEEE
Q 002884 536 HCARCRVPWHIDGGKLLLELNRVLRPGGYFVWSA 569 (870)
Q Consensus 536 ~Ss~~alhw~~D~~~vL~Ei~RVLKPGG~Lv~S~ 569 (870)
+-.. ....+..+.++|++||.++..+
T Consensus 212 ~d~~--------G~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 212 FDNV--------GGEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EECC--------CHHHHHHHHHHhCcCcEEEEec
Confidence 8642 1245688899999999999763
No 495
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=62.26 E-value=5.7 Score=44.93 Aligned_cols=120 Identities=12% Similarity=0.194 Sum_probs=62.3
Q ss_pred ccccccccccccchhHHhhhcCC---CeEEEEeccCCCCC---ChhHHHhhC----ccce-ecccc------ccccCCC-
Q 002884 720 SNVRNVMDMRAVYGGFAAALKDL---QVWVMNVVNVNSPD---TLPIIYERG----LFGI-YHDWC------ESFSTYP- 781 (870)
Q Consensus 720 ~~~RnvmDm~ag~GgfaaaL~~~---~vwvmNvvp~~~~~---tl~~i~eRG----lig~-~h~wc------e~f~tyP- 781 (870)
...+-|+|||||-||=.-.--.. .+...-|+.+.-.. .-.-+..|- +..+ |-.-| +.+. ++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e-~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE-FKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc-CCC
Confidence 45677999999999854433333 34555565554210 000011110 1111 11112 2222 33
Q ss_pred Cccchhhhhcccccc-cCCcChhhHHHhhhhcccCCcEEEEec--ChhhHHHHHHHHHcCCce
Q 002884 782 RSYDLLHADHLFSQL-KNRCKLVPVMAEVDRIVRPGGKLIVRD--EPSAVTEVENFLKSLHWE 841 (870)
Q Consensus 782 rtyDllHa~~lfS~~-~~rc~~~~vl~EmDRILRPgG~~iird--~~~~~~~~~~~~~~l~W~ 841 (870)
..||++-|...|-.- ..--.....|.-+-+.|||||+||-+- ...++.+|+.. ...+|-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~g 256 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFG 256 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhc
Confidence 339998875555321 111122345778889999999999884 44456666665 333553
No 496
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=62.17 E-value=40 Score=38.91 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchhHHHHhc-C---CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcccCCCC-CCceeEEEeccccc
Q 002884 468 TRVSLDVGCGVASFGGYLFE-R---DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTKRLQFP-RNVFDLVHCARCRV 542 (870)
Q Consensus 468 ~~~VLDIGCGtG~~a~~La~-r---~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae~LPfp-d~SFDlV~Ss~~al 542 (870)
..+|||.=+|+|.=+...+. . .|+.-|++|......+.+.....+........|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD---- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID---- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC----
Confidence 67999999999976655443 2 6888899999887776554444344444444343222221 3678888432
Q ss_pred ccccChHHHHHHHHhhcCCCcEEEEEECC
Q 002884 543 PWHIDGGKLLLELNRVLRPGGYFVWSATP 571 (870)
Q Consensus 543 hw~~D~~~vL~Ei~RVLKPGG~Lv~S~~p 571 (870)
+| -.+..++..+.|.+|.||+|.++.+.
T Consensus 129 PF-GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 129 PF-GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred CC-CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 12 23567888899999999999998654
No 497
>PRK11524 putative methyltransferase; Provisional
Probab=62.04 E-value=20 Score=39.29 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCchhH--HHHhcCCEEEEeCChhhHHHHHHHH
Q 002884 466 KYTRVSLDVGCGVASFG--GYLFERDVLTMSFAPKDEHDAQIQF 507 (870)
Q Consensus 466 ~~~~~VLDIGCGtG~~a--~~La~r~VtgVDiSp~ml~~A~vq~ 507 (870)
.++..|||-=||+|..+ +....|+.+|+|+++.....|..++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 47899999999999644 5556679999999998776666544
No 498
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=62.02 E-value=5.8 Score=40.42 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.0
Q ss_pred hhhHHHhhhhcccCCcEEEEe
Q 002884 802 LVPVMAEVDRIVRPGGKLIVR 822 (870)
Q Consensus 802 ~~~vl~EmDRILRPgG~~iir 822 (870)
+..+|.|+.|||+|||.++|-
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 567999999999999998887
No 499
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=61.65 E-value=89 Score=36.00 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCCCCEEEEECCCCch----hHHHHhcC-------CEEEEeC----ChhhHHHHH---HHHHHHcCCCcEEEEc--C-cc
Q 002884 465 GKYTRVSLDVGCGVAS----FGGYLFER-------DVLTMSF----APKDEHDAQ---IQFALERGIPAISAVM--G-TK 523 (870)
Q Consensus 465 g~~~~~VLDIGCGtG~----~a~~La~r-------~VtgVDi----Sp~ml~~A~---vq~A~ergl~~~~~v~--d-ae 523 (870)
+.+.-+|+|+|.|.|. +...|+.+ +||+|+. +...+.... .++|+..|++..+... . .+
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e 187 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLE 187 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchh
Confidence 4456789999999994 55556554 7999998 554444433 3577777887655442 1 12
Q ss_pred c-----CCCCCCceeEEEeccccccccc-------ChHHHHHHHHhhcCCCcEEEEE
Q 002884 524 R-----LQFPRNVFDLVHCARCRVPWHI-------DGGKLLLELNRVLRPGGYFVWS 568 (870)
Q Consensus 524 ~-----LPfpd~SFDlV~Ss~~alhw~~-------D~~~vL~Ei~RVLKPGG~Lv~S 568 (870)
. |...++-.=+|.|.+ .+|... ++...+....|.|+|.-+.+..
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred hCCHHHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 2 223333333333432 245443 1345577788899999666655
No 500
>PLN02740 Alcohol dehydrogenase-like
Probab=61.54 E-value=35 Score=38.63 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=53.8
Q ss_pred CCCCEEEEECCCC-chhHHHHhcC----CEEEEeCChhhHHHHHHHHHHHcCCCcEEEEcCcc-cC-----CCCCCceeE
Q 002884 466 KYTRVSLDVGCGV-ASFGGYLFER----DVLTMSFAPKDEHDAQIQFALERGIPAISAVMGTK-RL-----QFPRNVFDL 534 (870)
Q Consensus 466 ~~~~~VLDIGCGt-G~~a~~La~r----~VtgVDiSp~ml~~A~vq~A~ergl~~~~~v~dae-~L-----Pfpd~SFDl 534 (870)
.++.+||=+|||. |.++..+++. .|+++|.++. +.+.+++.|....+...... .+ .+..+.||+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dv 271 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE-----KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDY 271 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH-----HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCE
Confidence 4578999999763 3444444442 5888888775 34455566653322111100 00 111225999
Q ss_pred EEecccccccccChHHHHHHHHhhcCCC-cEEEEEE
Q 002884 535 VHCARCRVPWHIDGGKLLLELNRVLRPG-GYFVWSA 569 (870)
Q Consensus 535 V~Ss~~alhw~~D~~~vL~Ei~RVLKPG-G~Lv~S~ 569 (870)
|+-.. -....+....+.+++| |.+++.+
T Consensus 272 vid~~-------G~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 272 SFECA-------GNVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred EEECC-------CChHHHHHHHHhhhcCCCEEEEEc
Confidence 98642 1235778888899997 9888764
Done!