Query 002886
Match_columns 870
No_of_seqs 222 out of 482
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i2d_A E3 SUMO-protein ligase 100.0 6.7E-52 2.3E-56 447.9 17.4 258 137-395 64-345 (371)
2 4fo9_A E3 SUMO-protein ligase 100.0 5E-46 1.7E-50 401.2 19.5 293 134-433 13-353 (360)
3 3htk_C E3 SUMO-protein ligase 98.9 1.2E-09 3.9E-14 114.9 5.9 79 285-365 167-247 (267)
4 2kr4_A Ubiquitin conjugation f 97.4 0.00016 5.6E-09 63.1 5.6 72 290-366 5-76 (85)
5 2yu4_A E3 SUMO-protein ligase 97.2 0.00017 5.9E-09 63.9 3.5 71 296-368 4-81 (94)
6 1wgm_A Ubiquitin conjugation f 97.2 0.00059 2E-08 61.4 6.9 69 293-366 16-85 (98)
7 2kre_A Ubiquitin conjugation f 97.0 0.00095 3.2E-08 60.3 6.5 68 294-366 24-91 (100)
8 2bay_A PRE-mRNA splicing facto 96.6 0.00071 2.4E-08 56.2 1.9 54 298-355 2-55 (61)
9 1t1h_A Gspef-atpub14, armadill 96.4 0.0026 9.1E-08 53.4 4.3 65 298-366 7-71 (78)
10 2f42_A STIP1 homology and U-bo 96.4 0.0028 9.6E-08 63.3 5.2 67 296-366 103-169 (179)
11 2c2l_A CHIP, carboxy terminus 96.3 0.0029 9.9E-08 63.8 4.5 65 298-366 207-271 (281)
12 3ztg_A E3 ubiquitin-protein li 96.1 0.0058 2E-07 52.8 5.0 67 298-367 12-80 (92)
13 2y43_A E3 ubiquitin-protein li 95.0 0.033 1.1E-06 48.9 5.7 64 298-366 21-85 (99)
14 2ckl_B Ubiquitin ligase protei 94.9 0.019 6.5E-07 54.9 4.2 70 296-369 51-122 (165)
15 2ckl_A Polycomb group ring fin 94.7 0.049 1.7E-06 48.6 6.3 70 296-369 12-85 (108)
16 3lrq_A E3 ubiquitin-protein li 94.4 0.032 1.1E-06 49.6 4.2 67 296-366 19-86 (100)
17 1jm7_B BARD1, BRCA1-associated 94.3 0.038 1.3E-06 50.2 4.5 64 297-367 20-84 (117)
18 3fl2_A E3 ubiquitin-protein li 94.1 0.047 1.6E-06 49.9 4.7 66 297-367 50-117 (124)
19 1z6u_A NP95-like ring finger p 93.8 0.055 1.9E-06 51.8 4.8 66 297-367 76-143 (150)
20 2ecy_A TNF receptor-associated 93.6 0.068 2.3E-06 43.5 4.4 53 296-353 12-65 (66)
21 2ecw_A Tripartite motif-contai 93.5 0.017 5.7E-07 48.4 0.6 65 297-362 17-83 (85)
22 1jm7_A BRCA1, breast cancer ty 93.3 0.057 2E-06 47.8 3.9 61 298-361 20-81 (112)
23 2ysl_A Tripartite motif-contai 93.0 0.11 3.8E-06 42.7 4.8 56 296-354 17-73 (73)
24 3hct_A TNF receptor-associated 92.9 0.12 4E-06 47.1 5.3 85 294-387 13-98 (118)
25 2csy_A Zinc finger protein 183 91.9 0.21 7.2E-06 42.2 5.3 62 297-365 13-75 (81)
26 2ecv_A Tripartite motif-contai 91.9 0.048 1.6E-06 45.6 1.2 63 297-360 17-81 (85)
27 3hcs_A TNF receptor-associated 90.4 0.26 8.8E-06 47.2 4.9 69 294-367 13-82 (170)
28 3l11_A E3 ubiquitin-protein li 90.2 0.13 4.5E-06 46.2 2.5 65 299-367 15-86 (115)
29 1rmd_A RAG1; V(D)J recombinati 90.2 0.23 8E-06 44.6 4.1 66 297-367 21-88 (116)
30 2egp_A Tripartite motif-contai 90.1 0.019 6.6E-07 47.8 -2.8 60 298-360 11-75 (79)
31 2djb_A Polycomb group ring fin 90.1 0.24 8.1E-06 41.0 3.8 53 297-354 13-66 (72)
32 4ayc_A E3 ubiquitin-protein li 89.8 0.15 5E-06 47.7 2.6 64 299-367 53-118 (138)
33 2yur_A Retinoblastoma-binding 89.0 0.3 1E-05 40.8 3.6 54 296-352 12-66 (74)
34 3knv_A TNF receptor-associated 87.1 0.19 6.5E-06 47.7 1.4 91 288-387 20-120 (141)
35 1g25_A CDK-activating kinase a 82.9 1.1 3.7E-05 36.2 3.9 52 300-355 4-60 (65)
36 2ect_A Ring finger protein 126 82.0 1.6 5.4E-05 36.3 4.7 52 298-354 14-68 (78)
37 2xeu_A Ring finger protein 4; 80.1 0.71 2.4E-05 36.5 1.8 50 300-354 4-60 (64)
38 2d8t_A Dactylidin, ring finger 79.9 0.43 1.5E-05 39.3 0.5 50 299-353 15-64 (71)
39 3ng2_A RNF4, snurf, ring finge 78.8 0.85 2.9E-05 37.0 1.9 51 299-354 10-67 (71)
40 1chc_A Equine herpes virus-1 r 78.3 1.3 4.4E-05 35.8 2.8 46 299-349 5-51 (68)
41 2ct2_A Tripartite motif protei 76.7 2.5 8.4E-05 35.6 4.3 52 298-352 14-70 (88)
42 1bor_A Transcription factor PM 74.9 2.7 9.4E-05 33.4 3.9 46 299-352 6-51 (56)
43 2ysj_A Tripartite motif-contai 74.0 3.4 0.00012 33.0 4.2 47 295-344 16-63 (63)
44 2ep4_A Ring finger protein 24; 72.1 2.5 8.7E-05 34.7 3.2 47 298-349 14-63 (74)
45 2ecm_A Ring finger and CHY zin 71.5 2.9 9.8E-05 32.2 3.1 45 300-349 6-54 (55)
46 2ecj_A Tripartite motif-contai 70.6 5.8 0.0002 30.7 4.8 45 297-344 13-58 (58)
47 1x4j_A Ring finger protein 38; 69.9 1.8 6.1E-05 35.9 1.7 47 300-351 24-73 (75)
48 2ea6_A Ring finger protein 4; 67.2 2.6 9E-05 33.7 2.2 47 298-349 14-67 (69)
49 4ap4_A E3 ubiquitin ligase RNF 66.2 3 0.0001 37.2 2.6 51 299-354 7-64 (133)
50 1e4u_A Transcriptional repress 61.7 11 0.00037 32.4 5.1 52 299-353 11-65 (78)
51 2ecg_A Baculoviral IAP repeat- 60.6 5.1 0.00018 33.5 2.8 45 297-350 23-68 (75)
52 1iym_A EL5; ring-H2 finger, ub 59.4 5.9 0.0002 30.5 2.8 45 300-349 6-54 (55)
53 2kiz_A E3 ubiquitin-protein li 59.1 5.9 0.0002 32.0 2.9 48 298-350 13-63 (69)
54 1v87_A Deltex protein 2; ring- 54.3 8.4 0.00029 34.1 3.3 49 301-349 27-93 (114)
55 3cmg_A Putative beta-galactosi 54.1 15 0.00052 42.5 6.2 67 163-249 48-117 (667)
56 3fn9_A Putative beta-galactosi 53.0 16 0.00055 42.9 6.3 69 163-249 59-128 (692)
57 4ic3_A E3 ubiquitin-protein li 51.2 3.9 0.00013 34.3 0.6 42 299-349 24-66 (74)
58 3gm8_A Glycoside hydrolase fam 51.1 16 0.00056 43.7 6.0 69 163-249 65-133 (801)
59 1yq2_A Beta-galactosidase; gly 50.9 18 0.00062 44.5 6.5 69 163-249 117-188 (1024)
60 4ap4_A E3 ubiquitin ligase RNF 49.6 5.1 0.00017 35.7 1.1 51 299-354 72-129 (133)
61 3bga_A Beta-galactosidase; NYS 49.6 14 0.00049 45.3 5.3 66 164-249 126-193 (1010)
62 2vje_B MDM4 protein; proto-onc 49.5 7.1 0.00024 31.9 1.9 47 299-349 7-55 (63)
63 3lpf_A Beta-glucuronidase; alp 46.6 28 0.00094 40.1 6.7 69 163-249 66-135 (605)
64 2ecn_A Ring finger protein 141 45.9 3.8 0.00013 33.2 -0.3 48 299-352 15-62 (70)
65 1jz7_A Lactase, beta-galactosi 42.2 18 0.00062 44.5 4.6 68 163-249 118-187 (1023)
66 2ecl_A Ring-box protein 2; RNF 41.3 13 0.00046 31.5 2.4 32 317-353 47-79 (81)
67 2je8_A Beta-mannosidase; glyco 39.9 28 0.00095 41.7 5.6 65 166-249 66-132 (848)
68 2vzs_A CSXA, EXO-beta-D-glucos 39.7 41 0.0014 41.3 7.1 67 164-249 119-187 (1032)
69 3t6p_A Baculoviral IAP repeat- 38.9 7.8 0.00027 42.1 0.6 43 298-349 294-337 (345)
70 2l0b_A E3 ubiquitin-protein li 38.5 16 0.00053 31.6 2.4 47 299-350 40-89 (91)
71 3oba_A Beta-galactosidase; TIM 38.4 17 0.00059 44.8 3.6 68 163-249 111-180 (1032)
72 3hn3_A Beta-G1, beta-glucuroni 38.1 17 0.00059 41.5 3.3 68 167-249 80-151 (613)
73 2vje_A E3 ubiquitin-protein li 38.0 14 0.00048 30.2 1.9 46 300-349 9-56 (64)
74 2rpq_B Activating transcriptio 34.7 10 0.00035 30.8 0.5 15 418-432 31-45 (49)
75 6rxn_A Rubredoxin; electron tr 31.9 14 0.00048 29.7 0.9 11 337-347 29-39 (46)
76 4aw7_A GH86A beta-porphyranase 31.1 1.7E+02 0.006 34.2 10.0 84 170-261 491-582 (591)
77 2y1n_A E3 ubiquitin-protein li 31.1 20 0.00069 39.8 2.3 50 299-353 332-382 (389)
78 2yho_A E3 ubiquitin-protein li 31.1 13 0.00043 31.9 0.5 43 299-350 18-61 (79)
79 3m62_A Ubiquitin conjugation f 30.5 52 0.0018 40.6 5.8 67 295-365 887-953 (968)
80 2j9u_B VPS36, vacuolar protein 28.0 15 0.00052 32.5 0.5 11 335-345 14-24 (76)
81 1wim_A KIAA0161 protein; ring 27.9 18 0.00062 31.2 1.0 55 299-353 5-69 (94)
82 2ea5_A Cell growth regulator w 27.2 35 0.0012 28.3 2.6 41 300-349 16-57 (68)
83 2k5c_A Uncharacterized protein 24.9 10 0.00035 34.2 -1.1 17 338-354 8-24 (95)
84 4rxn_A Rubredoxin; electron tr 24.7 22 0.00076 29.4 0.9 11 337-347 35-45 (54)
85 1yk4_A Rubredoxin, RD; electro 24.2 23 0.00078 28.9 0.9 11 337-347 34-44 (52)
86 2yrc_A Protein transport prote 24.0 8.1 0.00028 32.3 -1.8 14 334-347 29-42 (59)
87 2v3b_B Rubredoxin 2, rubredoxi 23.9 23 0.00077 29.3 0.8 11 337-347 35-45 (55)
88 1e8j_A Rubredoxin; iron-sulfur 23.9 23 0.0008 28.9 0.9 11 337-347 35-45 (52)
89 1dx8_A Rubredoxin; electron tr 23.5 24 0.00081 30.5 0.9 11 337-347 39-49 (70)
90 2kn9_A Rubredoxin; metalloprot 23.1 23 0.0008 31.5 0.8 11 337-347 59-69 (81)
91 2d8s_A Cellular modulator of i 22.6 55 0.0019 28.2 3.1 38 309-351 31-71 (80)
No 1
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-52 Score=447.90 Aligned_cols=258 Identities=24% Similarity=0.475 Sum_probs=210.4
Q ss_pred ccceeecccccccchhceeec-ceeecCCCceeeEEEEeeccc---cc--CCCceEEEEEEecCCCCC--cceeeCCCcE
Q 002886 137 STVSTIMTRFYPLLKMGQILA-SLEVEPGYGAFMIDFHISKNM---IQ--STEEKIRLFVAQTDKTET--SACVISPQHV 208 (870)
Q Consensus 137 ~~vs~imsrFYP~~kl~~Il~-slEv~pG~g~~~idF~IsKs~---~~--~sq~kLrLfc~q~d~~~~--s~ci~wP~~I 208 (870)
..+.+..+|||.++++..-+. ......||+.+.++|.|++++ +. ..+++|+|||+..+..+. ..++.||..+
T Consensus 64 ~~l~Fk~SPFY~i~~~i~~~~~~~~~~~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~~ 143 (371)
T 3i2d_A 64 PTIHFKESPFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFPN 143 (371)
T ss_dssp CCCCBCCBTTEEEEEEEEEEEEEECCEEEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSSE
T ss_pred CceeecCCCCceeeeecCCccccccccCCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCce
Confidence 467788899999999877664 455568999999999999875 22 467899999998877653 3578999999
Q ss_pred EEEEcCceecc-ccccCCCCCCCCccccccccccc--ccEEEEEeee-CceEEEEEEEEEeecccch-------h-----
Q 002886 209 NFILNGKGIER-RTNVFMDPGPQLPTNVSPMLKYG--TNLLQAVGQF-NGHYIIIVAVMSTASSLES-------S----- 272 (870)
Q Consensus 209 ~IkVNGk~Ie~-rrnvk~kpG~d~PIDIT~~LK~G--~N~IqIv~~f-n~~YiiaV~lV~v~s~~e~-------~----- 272 (870)
+|+|||+.|+. .+++++|+|+++|+|||++|+.+ .|.|++.+.+ .+.|+++|++|+..+..+. +
T Consensus 144 eI~VNg~~vk~n~rGlKnk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~~i~~e 223 (371)
T 3i2d_A 144 ELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHPKIIKQ 223 (371)
T ss_dssp EEEETTEECCSCCSSCTTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSCCBCHH
T ss_pred EEEECCEEeccccccCCCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcCCCCHH
Confidence 99999999986 46788899999999999999986 7999998755 4679999999987653221 1
Q ss_pred hHHHhhhcccCCCCCCCCeeeccceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCC
Q 002886 273 KLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTD 352 (870)
Q Consensus 273 ~Lqd~Iq~~lss~D~DDDIv~~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~d 352 (870)
...++|++.+ ..|+||||++++..|||+||||++||++||||..|+|+|||||++||+++.++++|+||||++.+++++
T Consensus 224 ~tl~~Ik~~l-s~d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 224 ATLLYLKKTL-REDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp HHHHHHHHHH-HSCC------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred HHHHHHHHHh-ccCCCCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 1135667666 568889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHhCCCccEEEEccCCceEeeccCCccccccc
Q 002886 353 IRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAH 395 (870)
Q Consensus 353 L~ID~y~~eILk~~~enveeV~V~~DGsW~pv~E~ddd~d~~~ 395 (870)
|+||+||++||+++++++++|+|++||+|+++.|++||+|++.
T Consensus 303 L~ID~~~~~IL~~~~~dve~V~v~~DGsW~p~~e~~~d~~~d~ 345 (371)
T 3i2d_A 303 LAISEFVDDILQNCQKNVEQVELTSDGKWTAILEDDDDSDSDS 345 (371)
T ss_dssp EEEBHHHHHHHTTSCTTCCEEEEETTSCEEECC----------
T ss_pred eeEcHHHHHHHHhccCCccEEEECCCCCEEeccCCcCCCcccc
Confidence 9999999999999999999999999999999999887766553
No 2
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=5e-46 Score=401.18 Aligned_cols=293 Identities=18% Similarity=0.361 Sum_probs=171.8
Q ss_pred CccccceeecccccccchhceeecceeecC--CCc--eeeEEEEeecccc---------cC---C----CceEEEEEEec
Q 002886 134 NLVSTVSTIMTRFYPLLKMGQILASLEVEP--GYG--AFMIDFHISKNMI---------QS---T----EEKIRLFVAQT 193 (870)
Q Consensus 134 s~~~~vs~imsrFYP~~kl~~Il~slEv~p--G~g--~~~idF~IsKs~~---------~~---s----q~kLrLfc~q~ 193 (870)
..|+-+-..-.|||..+. .++...++.+ +.. ...+-|+++..+. .. . +..||+ |...
T Consensus 13 ~~~~~~~~k~lPFy~v~~--~l~~Pt~L~~~~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRf-C~~~ 89 (360)
T 4fo9_A 13 NLYFQGQLKNLPFYDVLD--VLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRL-CLAE 89 (360)
T ss_dssp ----CCCBCCCTTEEEEE--EEEEEEECCCCSSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEE-EEC-
T ss_pred ccCCCceecCCCchHhHh--hhcCceecccccCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEE-EEcc
Confidence 345666667779997764 3333223333 222 2234455554321 11 1 223333 3322
Q ss_pred CCCCCcceeeCCCcEEEEEcCceeccccc------cCCCCCCCCccccccccccc---ccEEEEEee--eCceEEEEEEE
Q 002886 194 DKTETSACVISPQHVNFILNGKGIERRTN------VFMDPGPQLPTNVSPMLKYG---TNLLQAVGQ--FNGHYIIIVAV 262 (870)
Q Consensus 194 d~~~~s~ci~wP~~I~IkVNGk~Ie~rrn------vk~kpG~d~PIDIT~~LK~G---~N~IqIv~~--fn~~YiiaV~l 262 (870)
+. ...++.||.+++|+|||+.++.+.. ...++++++|||||++|+.| .|.|++.+. +++.|+++|++
T Consensus 90 ~~--~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~l 167 (360)
T 4fo9_A 90 TS--CPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYL 167 (360)
T ss_dssp C---CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEE
T ss_pred CC--CcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEE
Confidence 22 2357889999999999999996421 11234688999999999988 489998875 35789999999
Q ss_pred EEeecccch------------hhHHHhhhcccCCCCCCCCeeeccceecccCCCcccccccCCCCCCcCcccccchHHHH
Q 002886 263 MSTASSLES------------SKLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYV 330 (870)
Q Consensus 263 V~v~s~~e~------------~~Lqd~Iq~~lss~D~DDDIv~~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL 330 (870)
|+..+..+- ...+++|++.+ ..|+||||+++++.|||+||||++||++||||..|+|+|||||++||
T Consensus 168 V~~~s~~~Llq~l~~k~~~~~e~t~~~Ik~~l-~~d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL 246 (360)
T 4fo9_A 168 VRQLTSAMLLQRLKMKGIRNPDHSRALIKEKL-TADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYL 246 (360)
T ss_dssp EEECCHHHHHHHHHTC-CBCHHHHHHHHHHHH-C---------CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHH
T ss_pred EEeCCHHHHHHHHHhcCCCCHHHHHHHHHHHh-ccCCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHH
Confidence 987653221 11135667666 56778999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHhCCCccEEEEccCCceEeeccCCcccc--cccccccccccccccc
Q 002886 331 HINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVD--QAHDRILSSEKEGCEH 408 (870)
Q Consensus 331 ~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~~enveeV~V~~DGsW~pv~E~ddd~d--~~~~~~~~~~~e~~~~ 408 (870)
+|++++++|+||||++.+++++|+||+||++||++++ ++++|+|++||+|+++.+++|..+ .......+........
T Consensus 247 ~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~~-~v~~I~v~~DGsW~p~~~k~e~~~~~~~~~~~~~~~~~~~~~ 325 (360)
T 4fo9_A 247 QMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDCS-DVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSVLSKP 325 (360)
T ss_dssp HHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTTCS-SCCEEEECC-CCEEC---------------------------
T ss_pred HHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHhCC-CCCEEEECCCCceecCCCCcccccccCCCCCCcccccccccc
Confidence 9999999999999999999999999999999999986 799999999999999987776322 2111111111000000
Q ss_pred -c--cccccCCCCCeEEeCCCCCccccc
Q 002886 409 -Q--ESAAVANSNPVILDLTKNDDEIDA 433 (870)
Q Consensus 409 -q--es~~s~~~~p~VIDLt~DDDE~D~ 433 (870)
. .+......+.+|||||.|+++||+
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~s~~~ 353 (360)
T 4fo9_A 326 CSVTVASEASKKKVDVIDLTIESSSDEE 353 (360)
T ss_dssp ----------------------------
T ss_pred cccCCCccccCCCccEEEecccCccccC
Confidence 0 111112347899999987775543
No 3
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.2e-09 Score=114.87 Aligned_cols=79 Identities=27% Similarity=0.459 Sum_probs=73.0
Q ss_pred CCCCCCeeeccceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccC--CCCccCcCCeeecHHHHHH
Q 002886 285 QDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPH--CNQHVCYTDIRVDQNMVKV 362 (870)
Q Consensus 285 ~D~DDDIv~~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPI--C~k~~~~~dL~ID~y~~eI 362 (870)
.++||||+.+...++|+|||++..|+.||++..|.| .||...+..+-...+.|.||+ |.+.+...+|+.|..+..+
T Consensus 167 ~~dDDDI~v~~~~~el~CPIcl~~f~DPVts~~CGH--sFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 167 PADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNH--VFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp TTCSSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCC--EEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred CCCCccceecCCceeeECcCccCcccCCeeeCCCCC--cccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHH
Confidence 467889999999999999999999999999999999 799999999987778899999 9999999999999999887
Q ss_pred HHH
Q 002886 363 LRE 365 (870)
Q Consensus 363 Lk~ 365 (870)
++.
T Consensus 245 ve~ 247 (267)
T 3htk_C 245 CKI 247 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.41 E-value=0.00016 Score=63.13 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=58.2
Q ss_pred CeeeccceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 290 DLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 290 DIv~~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
|.....+.-.+.|||++..|+-||... |.| .||.......-.. ...||+|++.+...+|+.+..+.++++..
T Consensus 5 e~~~~~~p~~~~CpI~~~~m~dPV~~~-cGh--tf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 5 EIDYSDAPDEFRDPLMDTLMTDPVRLP-SGT--VMDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCCCTTCCTTTBCTTTCSBCSSEEECT-TSC--EEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hhhhhcCchheECcccCchhcCCeECC-CCC--EECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 333345566899999999999999987 999 5888776665443 36899999999999999999998887754
No 5
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.00017 Score=63.88 Aligned_cols=71 Identities=20% Similarity=0.535 Sum_probs=58.2
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcC----CCcccccC--CCCc-cCcCCeeecHHHHHHHHHhCC
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSR----RPSWRCPH--CNQH-VCYTDIRVDQNMVKVLREVGE 368 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~q----kptW~CPI--C~k~-~~~~dL~ID~y~~eILk~~~e 368 (870)
....|.|||++..|+-||....|.| .|+.......-.. .....||+ |.+. +...+|+.|..+.++++...+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh--~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGH--TYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCC--EEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCC--eecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 3457899999999999999888999 6887765555332 35789999 9887 999999999999999887643
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.21 E-value=0.00059 Score=61.44 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=56.5
Q ss_pred eccceecccCCCcccccccCCCCCCcC-cccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 293 EGPSRISLNCPISYKRINTPVKGHSCR-HHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 293 ~~s~~VSL~CPIS~~RIkiPvRG~~Ck-HLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
...+.-.+.|||++..|+-||... |. | .||...+...-.. ...||+|++++...+|+.+..+.++++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~-cG~h--tf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLP-SSRV--TVDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECT-TTCC--EEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeECC-CCCe--EECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 344556799999999999999965 65 8 7888777766544 45899999999999999999999888764
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.03 E-value=0.00095 Score=60.29 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=57.5
Q ss_pred ccceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 294 GPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 294 ~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
..+.-.+.|||++..|+-||... |.| .||.......-.. ...||+|++++...+|+.+..+.++++..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~-cGh--tf~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLP-SGT--IMDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEET-TTE--EEEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeECC-CCC--EEchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 34556799999999999999987 999 5998877776543 46899999999999999999999888764
No 8
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.58 E-value=0.00071 Score=56.24 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=44.2
Q ss_pred ecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeee
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRV 355 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~I 355 (870)
+++.||||+..|+-||-...|.| .||.+.....-.+.. .||++++++..+||+-
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~--~yer~~I~~~l~~~~--~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRT--IFEKSLLEQYVKDTG--NDPITNEPLSIEEIVE 55 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTE--EEEHHHHHHHHHHHS--BCTTTCCBCCGGGCEE
T ss_pred CeEEecCCCCCCCCCEEeCCCCc--EEcHHHHHHHHHhCC--CCcCCcCCCChhhcEE
Confidence 57899999999999999878888 799988877655433 4999999999988863
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.40 E-value=0.0026 Score=53.36 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=52.2
Q ss_pred ecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
-.|.|||.+..|+.|+.. .|.| .|...-+...-. .....||+|++.+...+|+.+..+.++++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~-~CgH--~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIV-STGQ--TYERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSCTTTSCCCSSEEEE-TTTE--EEEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred ccCCCCCccccccCCEEc-CCCC--eecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 368999999999999986 6999 466555555443 3467899999999999999998888887764
No 10
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.39 E-value=0.0028 Score=63.30 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=56.1
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
+.-.+.|||++..|+-||.. .|.| .||.......-..... .||+|++++...+|+-+..+..+++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~-~~Gh--tfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCIT-PSGI--TYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEEC-TTSC--EEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeEC-CCCC--EECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 35579999999999999998 6999 7998877766544333 699999999999999999999888764
No 11
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.26 E-value=0.0029 Score=63.82 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=51.7
Q ss_pred ecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
-.+.|||++..|+-||... |.| .|+.......-...+ ..||+|++++...+|+.+..+.+++++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh--~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGI--TYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCC--EEETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCCeECC-CCC--EECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 4688999999999999866 999 566655554433222 1299999999999999999999998865
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.10 E-value=0.0058 Score=52.79 Aligned_cols=67 Identities=15% Similarity=0.282 Sum_probs=51.8
Q ss_pred ecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCcc-CcCCeeecHHHHHHHHHhC
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHV-CYTDIRVDQNMVKVLREVG 367 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~-~~~dL~ID~y~~eILk~~~ 367 (870)
-.|.|||-+..++-|+.-..|.|.=|.+- ..|+. ......||+|.+.+ ...+|..+..+.++++.+.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---hcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 36899999999999998766999655532 33443 33457899999997 6889999999999887653
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.96 E-value=0.033 Score=48.86 Aligned_cols=64 Identities=19% Similarity=0.444 Sum_probs=51.1
Q ss_pred ecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
-.+.|||-+..++.|+.-..|.|.=|.+- ..|+. . .-.||+|++.+...+|..+..+.++++.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~--~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS---Y--KTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT---T--CCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH---C--CCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 46899999999999988888999755532 23333 2 35899999999999999999999888765
No 14
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.87 E-value=0.019 Score=54.94 Aligned_cols=70 Identities=20% Similarity=0.467 Sum_probs=54.2
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCcc-CcCCeeecHHHHHHHHHhCCC
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHV-CYTDIRVDQNMVKVLREVGEN 369 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~-~~~dL~ID~y~~eILk~~~en 369 (870)
..-.+.|||-+..+..|+.-..|.|.=|.+- ..|+. .....||+|.+.+ ...+|..|..+.++++.+..+
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 4457899999999999998889999766642 33443 2357799999998 467899999999999987653
No 15
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.73 E-value=0.049 Score=48.62 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=53.7
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcC----CeeecHHHHHHHHHhCCC
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYT----DIRVDQNMVKVLREVGEN 369 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~----dL~ID~y~~eILk~~~en 369 (870)
+.-.+.|||-+..+..|+.-..|.|.=|.+ -+...-.. .-.||+|.+.+... +|..|..+.++++.+..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~--Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKT--CIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHH--HHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHH--HHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 345688999999999999888999975554 22222222 26899999999876 899999999999887543
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.37 E-value=0.032 Score=49.56 Aligned_cols=67 Identities=15% Similarity=0.365 Sum_probs=53.0
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV 366 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~ 366 (870)
+.-.+.|||=+..++.|+.-..|.|.=|++ +..|+... ...||+|.+.+...+|+...++.++.+.+
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCEECTTHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCHHHhHhhHHHHHHHHHH
Confidence 344689999999999999878999976664 34455543 26899999999999999988888776654
No 17
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.27 E-value=0.038 Score=50.20 Aligned_cols=64 Identities=19% Similarity=0.430 Sum_probs=50.6
Q ss_pred eecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHhC
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVG 367 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~~ 367 (870)
.-.|.|||-+..++.|+.-..|.|.=|..- ..|+. ..||+|.+.+...+|..+..+..+++.+.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 346899999999999998878999766542 22222 57999999999999999999988877553
No 18
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.06 E-value=0.047 Score=49.89 Aligned_cols=66 Identities=20% Similarity=0.461 Sum_probs=52.3
Q ss_pred eecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCc-CCeeecHHHHHHHHHhC
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCY-TDIRVDQNMVKVLREVG 367 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~-~dL~ID~y~~eILk~~~ 367 (870)
.-.+.|||-+..+..|+.- .|.|.=|.+- ..|+. .....||+|.+.+.. .+|..+..+.++++.+-
T Consensus 50 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred ccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 3468999999999999875 8999766643 24444 345689999999987 88999999999998753
No 19
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.79 E-value=0.055 Score=51.82 Aligned_cols=66 Identities=18% Similarity=0.374 Sum_probs=52.5
Q ss_pred eecccCCCcccccccCCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcC-CeeecHHHHHHHHHhC
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYT-DIRVDQNMVKVLREVG 367 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~-dL~ID~y~~eILk~~~ 367 (870)
.-.+.|||-+..+..|+. ..|.|.=|.+ +..|+. .....||+|.+.+... +|..+..+.++++.+-
T Consensus 76 ~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred ccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 346899999999999998 6899976653 233443 2446899999999988 8999999999998764
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.60 E-value=0.068 Score=43.50 Aligned_cols=53 Identities=15% Similarity=0.409 Sum_probs=40.0
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCe
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDI 353 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL 353 (870)
..-.+.|||-+..++.|+. ..|.|.=|.+ +..|+. .....||+|++.+..++|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT----TSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH----hCcCCCCCCCcCCChhhc
Confidence 3446889999999999999 6999975544 233332 455689999999988775
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.53 E-value=0.017 Score=48.41 Aligned_cols=65 Identities=18% Similarity=0.478 Sum_probs=46.7
Q ss_pred eecccCCCcccccccCCCCCCcCcccccch-HHHHHHHc-CCCcccccCCCCccCcCCeeecHHHHHH
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINS-RRPSWRCPHCNQHVCYTDIRVDQNMVKV 362 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~-qkptW~CPIC~k~~~~~dL~ID~y~~eI 362 (870)
.-.+.|||-+..++.|+. ..|.|.=|.+- ..|+.... ......||+|.+.+..++|+.+..+.++
T Consensus 17 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred ccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 346889999999999986 46999766543 23443322 2357899999999999998887655443
No 22
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.35 E-value=0.057 Score=47.83 Aligned_cols=61 Identities=21% Similarity=0.509 Sum_probs=43.8
Q ss_pred ecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCeeecHHHHH
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVK 361 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~e 361 (870)
-.+.|||-+..++.|+. ..|.|.=|.+- ..|+.. ......||+|.+.+...+|..+..+.+
T Consensus 20 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~~~~~~~~l~~ 81 (112)
T 1jm7_A 20 KILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQ--KKGPSQCPLCKNDITKRSLQESTRFSQ 81 (112)
T ss_dssp HHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHS--SSSSCCCTTTSCCCCTTTCBCCCSSSH
T ss_pred CCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHh--CCCCCCCcCCCCcCCHhhcCccHHHHH
Confidence 36789999999999988 58999766653 334332 234578999999999888766544333
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.03 E-value=0.11 Score=42.68 Aligned_cols=56 Identities=27% Similarity=0.578 Sum_probs=41.3
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccchHHHHHHHc-CCCcccccCCCCccCcCCee
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINS-RRPSWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~-qkptW~CPIC~k~~~~~dL~ 354 (870)
+.-.+.|||-+..++.|+.- .|.|.=|.+ =+..... ......||+|.+.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLK--CITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEEHH--HHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhhHH--HHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 44568999999999999886 899975543 3333322 23567899999999888764
No 24
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=92.91 E-value=0.12 Score=47.07 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=61.8
Q ss_pred ccceecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHhCCCccE
Q 002886 294 GPSRISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVAD 372 (870)
Q Consensus 294 ~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~~envee 372 (870)
..+.-.+.|||-+..++.|+.. .|.|.=|.+- ..|+.... ..||+|++.+...++..|.++.++|.++.-...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~- 86 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLMVKCP- 86 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSEEECS-
T ss_pred cCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccceeECC-
Confidence 3455578999999999999885 7999766543 34444332 289999999999999999999998887542221
Q ss_pred EEEccCCceEeeccC
Q 002886 373 VIISADGSWKAIMEA 387 (870)
Q Consensus 373 V~V~~DGsW~pv~E~ 387 (870)
...-+|.....+
T Consensus 87 ---n~gC~~~~~~~~ 98 (118)
T 3hct_A 87 ---NEGCLHKMELRH 98 (118)
T ss_dssp ---STTCCCEEEGGG
T ss_pred ---CCCCCCEEeeHH
Confidence 245577766654
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.93 E-value=0.21 Score=42.16 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=45.5
Q ss_pred eecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHH
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLRE 365 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~ 365 (870)
...+.|||-+..++.|+. ..|.|.=|++- ..|+.. ...||+|.+.+. ..+..+..+.+.|++
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~-~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-----TPRCYICDQPTG-GIFNPAKELMAKLQK 75 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-----CSBCSSSCCBCC-SCCEECHHHHHHHSS
T ss_pred CCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-----CCcCCCcCcccc-ccCCcHHHHHHHHHh
Confidence 346899999999999986 68999766542 344432 458999999997 677777666555544
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.87 E-value=0.048 Score=45.59 Aligned_cols=63 Identities=19% Similarity=0.443 Sum_probs=45.5
Q ss_pred eecccCCCcccccccCCCCCCcCcccccch-HHHHHHH-cCCCcccccCCCCccCcCCeeecHHHH
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHIN-SRRPSWRCPHCNQHVCYTDIRVDQNMV 360 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n-~qkptW~CPIC~k~~~~~dL~ID~y~~ 360 (870)
.-.+.|||-+..++.|+.- .|.|.=|.+- ..|+... .......||+|.+.+...+|..+..+.
T Consensus 17 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred cCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 3468999999999999875 7999766553 2344432 234577899999999988887665543
No 27
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=90.44 E-value=0.26 Score=47.22 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=53.6
Q ss_pred ccceecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHhC
Q 002886 294 GPSRISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVG 367 (870)
Q Consensus 294 ~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~~ 367 (870)
..+.-.|.|||-+..++.|+. ..|.|.=|.+- ..|+.... ..||+|.+.+...+|..|.++.++|.++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 345557999999999999988 57999766542 33443322 28999999999999999999998888753
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=90.18 E-value=0.13 Score=46.19 Aligned_cols=65 Identities=20% Similarity=0.448 Sum_probs=48.4
Q ss_pred cccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCc-------CCeeecHHHHHHHHHhC
Q 002886 299 SLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCY-------TDIRVDQNMVKVLREVG 367 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~-------~dL~ID~y~~eILk~~~ 367 (870)
.+.|||-+..+..|+.- .|.|.=|.+- +... .......||+|.+.+.. .++.+|..+.++++..-
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~C--i~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPC--FQST-VEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHH--HCCC-CCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHH--HHHH-HhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 58899999999999887 7999655432 1111 12335789999999874 78889999988887653
No 29
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=90.16 E-value=0.23 Score=44.63 Aligned_cols=66 Identities=23% Similarity=0.441 Sum_probs=49.7
Q ss_pred eecccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCee-ecHHHHHHHHHhC
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIR-VDQNMVKVLREVG 367 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~-ID~y~~eILk~~~ 367 (870)
.-.+.|||-+..++.|+. ..|.|.=|.+- ..|+... .-.||+|.+.+...+|+ .+..+.++++++.
T Consensus 21 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 21 VKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp HHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred cCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 347899999999999998 58999766542 3444432 34799999999998875 5777778887653
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=90.09 E-value=0.019 Score=47.82 Aligned_cols=60 Identities=20% Similarity=0.516 Sum_probs=41.7
Q ss_pred ecccCCCcccccccCCCCCCcCcccccchHHHHHHHcC-----CCcccccCCCCccCcCCeeecHHHH
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSR-----RPSWRCPHCNQHVCYTDIRVDQNMV 360 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~q-----kptW~CPIC~k~~~~~dL~ID~y~~ 360 (870)
-.+.|||-+..++.|+. ..|.|.=|.+ =+...... .....||+|.+.+...+|+.+..+.
T Consensus 11 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~--Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS-LDCGHSLCRA--CITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCCEETTTTEECSSCCC-CSSSCCCCHH--HHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred cCCCCcCCCcccCCeeE-CCCCCHHHHH--HHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 35789999999999987 4799975543 22221111 2367899999999988777655443
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.06 E-value=0.24 Score=41.05 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=42.0
Q ss_pred eecccCCCcccccccCCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCee
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL~ 354 (870)
.-.+.|||-+..++.|+.-..|.|.=|.+ +..|+.. ...||+|.+.+...++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 44789999999999999888999977764 4455543 45899999999887764
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=89.85 E-value=0.15 Score=47.69 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=42.5
Q ss_pred cccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcC--CeeecHHHHHHHHHhC
Q 002886 299 SLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYT--DIRVDQNMVKVLREVG 367 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~--dL~ID~y~~eILk~~~ 367 (870)
.|.|||-+..+..|+- ..|.|.=|++- +..... ..-.||+|.+++... ++.+|..+.++++.+.
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~C--i~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~l~ 118 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYC--INEWMK--RKIECPICRKDIKSKTYSLVLDNCINKMVNNLS 118 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHH--HHHHTT--TCSBCTTTCCBCCCEEECHHHHHHHHHHHTTSC
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHH--HHHHHH--cCCcCCCCCCcCCCCCCccchhHHHHHHHHHhh
Confidence 3689999999999875 57999655543 222222 235699999988643 4566666666655443
No 33
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=88.98 E-value=0.3 Score=40.81 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=39.3
Q ss_pred ceecccCCCcccccccCCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCC
Q 002886 296 SRISLNCPISYKRINTPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTD 352 (870)
Q Consensus 296 ~~VSL~CPIS~~RIkiPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~d 352 (870)
+.-.+.|||-+..++.|+.-..|.|.=|.+ +..|+.. .....||+|.+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---SDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---SSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---cCCCcCCCCCCcCCCcc
Confidence 345789999999999999966699976665 3445543 23568999999754433
No 34
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=87.09 E-value=0.19 Score=47.72 Aligned_cols=91 Identities=14% Similarity=0.324 Sum_probs=61.8
Q ss_pred CCCeeeccceecccCCCcccccccCCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCc---------CCeeecH
Q 002886 288 DSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCY---------TDIRVDQ 357 (870)
Q Consensus 288 DDDIv~~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~---------~dL~ID~ 357 (870)
|.+++...+.-.|.|||-+..++-|+. ..|.|.=|.+ +..|+ +.....||+|.+++.+ .++..|.
T Consensus 20 ~~~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~ 94 (141)
T 3knv_A 20 SKTLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASIL----SSGPQNCAACVHEGIYEEGISILESSSAFPDN 94 (141)
T ss_dssp CGGGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHG----GGSCEECHHHHHTTCCCTTTTEECGGGCEECH
T ss_pred chhhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHH----hcCCCCCCCCCCcccccccccccchhhhcccH
Confidence 345555566678999999999999988 5899975554 22233 2344689999987543 3677899
Q ss_pred HHHHHHHHhCCCccEEEEccCCceEeeccC
Q 002886 358 NMVKVLREVGENVADVIISADGSWKAIMEA 387 (870)
Q Consensus 358 y~~eILk~~~enveeV~V~~DGsW~pv~E~ 387 (870)
++.+.|.++.-.+. ...-.|.....+
T Consensus 95 ~~~~~i~~L~v~Cp----n~GC~~~~~l~~ 120 (141)
T 3knv_A 95 AARREVESLPAVCP----SDGCTWKGTLKE 120 (141)
T ss_dssp HHHHHHHTSEEECC----STTCCCEEEHHH
T ss_pred HHHHHHcccccccC----CCCCCCEeEHHH
Confidence 99888876542221 146677776654
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.85 E-value=1.1 Score=36.23 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=37.6
Q ss_pred ccCCCccc-ccccCCC---CCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCeee
Q 002886 300 LNCPISYK-RINTPVK---GHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDIRV 355 (870)
Q Consensus 300 L~CPIS~~-RIkiPvR---G~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL~I 355 (870)
+.|||-+. .+.-|.+ ...|.|.=|.+- ..|+. .....||+|++.+...+++-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 67999999 8888875 468999765542 22322 23568999999998888764
No 36
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=81.99 E-value=1.6 Score=36.29 Aligned_cols=52 Identities=15% Similarity=0.338 Sum_probs=35.6
Q ss_pred ecccCCCcccccccCCC--CCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCee
Q 002886 298 ISLNCPISYKRINTPVK--GHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvR--G~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL~ 354 (870)
-.+.|||-+..+..|.. -..|.|.=|++ +..|+. ....||+|.+.+...++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-----QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-----TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-----cCCcCcCcCCccCCcccC
Confidence 45789999888876543 34688865554 344553 225899999998877664
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=80.06 E-value=0.71 Score=36.53 Aligned_cols=50 Identities=20% Similarity=0.512 Sum_probs=35.6
Q ss_pred ccCCCcccccccCC------CCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCee
Q 002886 300 LNCPISYKRINTPV------KGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 300 L~CPIS~~RIkiPv------RG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL~ 354 (870)
+.|||-+..++.|. ....|.|.=|.+ +..|+.. ...||+|.+.+...+++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 57899888888773 456799865544 2345543 34899999999887764
No 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.87 E-value=0.43 Score=39.33 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=34.4
Q ss_pred cccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCe
Q 002886 299 SLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDI 353 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL 353 (870)
.+.|||-+..++.|+.- .|.|.=|++ =+..... ....||+|.+.+...+|
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~--Ci~~~~~--~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYL--CVKGASW--LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHH--HHHHCTT--CSSBCSSSCCBCCHHHH
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHH--HHHHHHH--CCCcCcCcCchhCHhhc
Confidence 46899999999999776 599975543 2222212 23689999999865443
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=78.79 E-value=0.85 Score=36.99 Aligned_cols=51 Identities=20% Similarity=0.503 Sum_probs=36.2
Q ss_pred cccCCCcccccccCC------CCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCee
Q 002886 299 SLNCPISYKRINTPV------KGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 299 SL~CPIS~~RIkiPv------RG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL~ 354 (870)
.+.|||=+..+..|+ ....|.|.=|.+ +..|+... -.||+|.+.+...+++
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCCCSCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccChhhee
Confidence 367999998888774 556799865554 23455432 3899999999877764
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=78.32 E-value=1.3 Score=35.83 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=33.9
Q ss_pred cccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccC
Q 002886 299 SLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
...|||-+..++.|+.-..|.|.=|++- ..|+.. ...||+|.+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-----SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-----cCcCcCCChhhH
Confidence 4579999998888877788999766553 345542 248999998864
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.66 E-value=2.5 Score=35.56 Aligned_cols=52 Identities=25% Similarity=0.511 Sum_probs=36.6
Q ss_pred ecccCCCccccccc----CCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCC
Q 002886 298 ISLNCPISYKRINT----PVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTD 352 (870)
Q Consensus 298 VSL~CPIS~~RIki----PvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~d 352 (870)
-.+.|||-+..+.. |+.- .|.|.=|.+- ..|+... .....||+|.+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccchh
Confidence 35789999988887 6554 7999766553 3444432 34678999999987764
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.89 E-value=2.7 Score=33.38 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=32.2
Q ss_pred cccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCC
Q 002886 299 SLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTD 352 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~d 352 (870)
.|.|||=+..++.|+. ..|.|.=|.+-. ......||+|.+.+...+
T Consensus 6 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci-------~~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKL-LPCLHTLCSGCL-------EASGMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSCSSSCSSCBCCSC-STTSCCSBTTTC-------SSSSSSCSSCCSSSSCCS
T ss_pred CCCceEeCCccCCeEE-cCCCCcccHHHH-------ccCCCCCCcCCcEeecCC
Confidence 4679999999988865 459996554321 113557999999887654
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.02 E-value=3.4 Score=32.97 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=33.9
Q ss_pred cceecccCCCcccccccCCCCCCcCcccccc-hHHHHHHHcCCCcccccCC
Q 002886 295 PSRISLNCPISYKRINTPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHC 344 (870)
Q Consensus 295 s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC 344 (870)
.+.-.+.|||-+..++.|+.- .|.|.=|.+ +..|+.. .....+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 345578999999999999886 899986654 2344442 2346689998
No 44
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.15 E-value=2.5 Score=34.69 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=31.5
Q ss_pred ecccCCCcccccccCCCCC--CcCcccccc-hHHHHHHHcCCCcccccCCCCccC
Q 002886 298 ISLNCPISYKRINTPVKGH--SCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~--~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
....|||=+..+..|..-. .|.|.=|++ +..|+..+ ..||+|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 3567999888887665442 698865544 34555542 28999998864
No 45
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=71.50 E-value=2.9 Score=32.23 Aligned_cols=45 Identities=24% Similarity=0.550 Sum_probs=28.6
Q ss_pred ccCCCccccccc---CCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccC
Q 002886 300 LNCPISYKRINT---PVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 300 L~CPIS~~RIki---PvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
..|||-+..+.. +++-..|.|.=|.+ +..|+... ..||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 457777766643 34555688865544 34555543 78999998763
No 46
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.63 E-value=5.8 Score=30.72 Aligned_cols=45 Identities=20% Similarity=0.562 Sum_probs=31.6
Q ss_pred eecccCCCcccccccCCCCCCcCcccccchHHHHHHHc-CCCcccccCC
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINS-RRPSWRCPHC 344 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~-qkptW~CPIC 344 (870)
.-.+.|||-+..++.|+. ..|.|.=|. .=+..... ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~--~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI-IECGHNFCK--ACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC-CSSCCCCCH--HHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe-CCCCCccCH--HHHHHHHHhcCCCCCCCCC
Confidence 346789999999999987 579997554 33333322 2356789998
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.89 E-value=1.8 Score=35.89 Aligned_cols=47 Identities=15% Similarity=0.380 Sum_probs=31.0
Q ss_pred ccCCCcccccccC--CCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcC
Q 002886 300 LNCPISYKRINTP--VKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYT 351 (870)
Q Consensus 300 L~CPIS~~RIkiP--vRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~ 351 (870)
..|||-+..++.+ ++-..|.|.=|++ +..||..+ ..||+|.+.+...
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGPS 73 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCCC
Confidence 4688887777655 3445588765544 34566542 4799999887653
No 48
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.21 E-value=2.6 Score=33.67 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=32.4
Q ss_pred ecccCCCcccccccCC------CCCCcCcccccch-HHHHHHHcCCCcccccCCCCccC
Q 002886 298 ISLNCPISYKRINTPV------KGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 298 VSL~CPIS~~RIkiPv------RG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
-.+.|||-+..++.|. ....|.|.=|.+- ..|+.. .-.||+|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 3578999999888874 4467988655442 344443 348999998875
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=66.24 E-value=3 Score=37.20 Aligned_cols=51 Identities=20% Similarity=0.532 Sum_probs=36.5
Q ss_pred cccCCCcccccccCC------CCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCee
Q 002886 299 SLNCPISYKRINTPV------KGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 299 SL~CPIS~~RIkiPv------RG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL~ 354 (870)
.+.|||=+..++.|+ ....|.|.=|++ +..||. . .-.||+|.+.+...++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---N--ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---T--CSBCTTTCCBCTTTCEE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---h--CCCCCCCCCcCcccccc
Confidence 478999999998884 566899965544 334443 2 23899999998776654
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=61.66 E-value=11 Score=32.40 Aligned_cols=52 Identities=15% Similarity=0.404 Sum_probs=33.2
Q ss_pred cccCCCcccccccC-CCCC--CcCcccccchHHHHHHHcCCCcccccCCCCccCcCCe
Q 002886 299 SLNCPISYKRINTP-VKGH--SCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDI 353 (870)
Q Consensus 299 SL~CPIS~~RIkiP-vRG~--~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL 353 (870)
.+.|||=+..+.++ .+.. .|.|.=|.+- |..+.. .....||+|.+.+....+
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~C--l~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFC--WHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHH--HHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHH--HHHHHh-cCCCCCCCCCCccCCCch
Confidence 46799988877653 2222 2899755543 333322 246799999999876655
No 51
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.59 E-value=5.1 Score=33.47 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=33.1
Q ss_pred eecccCCCcccccccCCCCCCcCcc-cccchHHHHHHHcCCCcccccCCCCccCc
Q 002886 297 RISLNCPISYKRINTPVKGHSCRHH-QCFDFSNYVHINSRRPSWRCPHCNQHVCY 350 (870)
Q Consensus 297 ~VSL~CPIS~~RIkiPvRG~~CkHL-QCFDL~sFL~~n~qkptW~CPIC~k~~~~ 350 (870)
.-.+.|||=+..++.|+. ..|.|. =|.+-.. ...+||+|.+.+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 346789999999888876 579998 5655431 13789999998754
No 52
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=59.39 E-value=5.9 Score=30.53 Aligned_cols=45 Identities=16% Similarity=0.383 Sum_probs=26.6
Q ss_pred ccCCCccccccc---CCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccC
Q 002886 300 LNCPISYKRINT---PVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 300 L~CPIS~~RIki---PvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
..|||-+..++. +..-..|.|.=|++- ..|+. ....||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCEeE
Confidence 457777766655 333335888533332 23332 2457999998764
No 53
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=59.10 E-value=5.9 Score=32.01 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=29.8
Q ss_pred ecccCCCcccccc--cCCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCc
Q 002886 298 ISLNCPISYKRIN--TPVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCY 350 (870)
Q Consensus 298 VSL~CPIS~~RIk--iPvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~ 350 (870)
....|||=+..+. .+++...|.|.=|++ +..|+..+ ..||+|.+.+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 3457888776664 234445688865544 33455442 359999988754
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=54.30 E-value=8.4 Score=34.13 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=30.1
Q ss_pred cCCCcccccccCC-----------------CCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccC
Q 002886 301 NCPISYKRINTPV-----------------KGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 301 ~CPIS~~RIkiPv-----------------RG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
.|||=+..+..|+ +-..|.|.=|++ +..||....+...-.||+|.+.+.
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4777766665543 134577743333 346665544455678999998763
No 55
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Probab=54.06 E-value=15 Score=42.54 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=44.9
Q ss_pred CCCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCc--cccccccc
Q 002886 163 PGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLP--TNVSPMLK 240 (870)
Q Consensus 163 pG~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~P--IDIT~~LK 240 (870)
.|.+.+...|.+.+.+ ..+++.|...-.+ ...++.|||+.|-.. .|--.| +|||++|+
T Consensus 48 ~g~~wYr~~f~~p~~~---~~~~~~L~f~gv~-----------~~a~V~vNG~~vg~~------~~~~~~~~~dit~~l~ 107 (667)
T 3cmg_A 48 RGIGNYEKALYIRPEW---KGKRLFLRFDGVN-----------SIADVFINRKHIGEH------RGGYGAFIFEITDLVK 107 (667)
T ss_dssp CSEEEEEEEEECCGGG---TTSEEEEEESCCB-----------SEEEEEETTEEEEEE------ECSSSCEEEECTTTSC
T ss_pred ceeEEEEEEEECCccc---CCCEEEEEECCcc-----------ceeEEEECCEEEeee------cCCcccEEEECCHHHC
Confidence 4567777888887653 3456766653222 135789999988542 222233 89999999
Q ss_pred cc-ccEEEEE
Q 002886 241 YG-TNLLQAV 249 (870)
Q Consensus 241 ~G-~N~IqIv 249 (870)
.| .|.|.|.
T Consensus 108 ~G~~N~l~V~ 117 (667)
T 3cmg_A 108 YGEKNSVLVR 117 (667)
T ss_dssp TTSEEEEEEE
T ss_pred CCCCcEEEEE
Confidence 98 7999875
No 56
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=53.02 E-value=16 Score=42.92 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCccccccccccc
Q 002886 163 PGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYG 242 (870)
Q Consensus 163 pG~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~PIDIT~~LK~G 242 (870)
.|.+-+.-.|.|.+.+ ..+++.|...-.+ ...++.|||+.|-...+- -+..-+|||++||.|
T Consensus 59 ~g~~wYr~~f~~p~~~---~~~~~~L~f~gv~-----------~~a~V~vNG~~vg~~~~g----~~~f~~dIt~~l~~G 120 (692)
T 3fn9_A 59 EGAGYYRKTQFFPHDL---EGKRVFLRFEGVG-----------ACAEVYVNGKLAGTHKGG----YSAFACEIGTALKLG 120 (692)
T ss_dssp CSEEEEEEEEEECGGG---TTCEEEEEESCCB-----------SEEEEEETTEEEEEEECT----TSCEEEECGGGCCTT
T ss_pred ceEEEEEEEEEECchh---CCCeEEEEECCcc-----------EeeEEEECCEEeeeEcCC----cceEEEEChHhcCCC
Confidence 3566777889997653 3566777664322 135788999988542110 022338999999999
Q ss_pred -ccEEEEE
Q 002886 243 -TNLLQAV 249 (870)
Q Consensus 243 -~N~IqIv 249 (870)
.|.|.|.
T Consensus 121 ~~N~l~V~ 128 (692)
T 3fn9_A 121 AENEIIVK 128 (692)
T ss_dssp EEEEEEEE
T ss_pred CceEEEEE
Confidence 8999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=51.25 E-value=3.9 Score=34.25 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=30.0
Q ss_pred cccCCCcccccccCCCCCCcCcc-cccchHHHHHHHcCCCcccccCCCCccC
Q 002886 299 SLNCPISYKRINTPVKGHSCRHH-QCFDFSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHL-QCFDL~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
.+.|+|=+..++.|+-- -|.|. =|++-..- ...||+|.+.+.
T Consensus 24 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~--------~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFV-PCGHLVTCKQCAEA--------VDKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTT--------CSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEc-CCCChhHHHHhhhc--------CccCCCcCcCcc
Confidence 46899988888877653 68887 56543211 178999999875
No 58
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus}
Probab=51.11 E-value=16 Score=43.66 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCccccccccccc
Q 002886 163 PGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYG 242 (870)
Q Consensus 163 pG~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~PIDIT~~LK~G 242 (870)
.|.+-+.-.|.+...+ ..+++.|...-.+. ..++.|||+.|-...+- -+..-+|||++||.|
T Consensus 65 ~g~~wYrk~f~vp~~~---~~~~v~L~f~gv~~-----------~a~V~vNG~~vG~~~~g----~~pf~~DIT~~Lk~G 126 (801)
T 3gm8_A 65 AGISWYRKTFTIPSKW---KNKKVQILFEGVYL-----------NSEVWINGHWLGKRPNG----YISFVYDLTPYLQEG 126 (801)
T ss_dssp CEEEEEEEEEECCSGG---GSCEEEEEESCCBS-----------CEEEEETTEEEEEECCS----SCCEEEECGGGCCSS
T ss_pred CceEEEEEEEEcCccc---CCCEEEEEECccce-----------EEEEEECCEEeecccCC----cccEEEECcHhccCC
Confidence 3455677788887653 35667776643221 35788999988542110 122348999999999
Q ss_pred ccEEEEE
Q 002886 243 TNLLQAV 249 (870)
Q Consensus 243 ~N~IqIv 249 (870)
.|.|.|.
T Consensus 127 ~N~L~V~ 133 (801)
T 3gm8_A 127 KNQIAVK 133 (801)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 9999875
No 59
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3
Probab=50.90 E-value=18 Score=44.47 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=46.0
Q ss_pred CCCceeeEEEEeecccccCCC-ceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCC--cccccccc
Q 002886 163 PGYGAFMIDFHISKNMIQSTE-EKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQL--PTNVSPML 239 (870)
Q Consensus 163 pG~g~~~idF~IsKs~~~~sq-~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~--PIDIT~~L 239 (870)
.+.+.+.-.|.|.+.+. ... +++.|...-.+. ..++.|||+.|-.- .|--. -+|||++|
T Consensus 117 ~~~~wYrr~F~vp~~~~-~~g~~rv~L~F~gv~~-----------~a~V~vNG~~VG~~------~gg~~p~~~DIT~~L 178 (1024)
T 1yq2_A 117 NPTGDFRRRFDVPAQWF-ESTTAALTLRFDGVES-----------RYKVWVNGQEIGVG------SGSRLAQEFDVSDAL 178 (1024)
T ss_dssp CCEEEEEEEEEECGGGG-STTEEEEEEEESCEES-----------CEEEEETTEEEEEE------CCTTSCEEEECTTTC
T ss_pred CceEEEEEEeEECchHh-cCCCceEEEEECCCCc-----------eEEEEECCEEEEEE------eCCccceEEecHHhc
Confidence 45567778899976632 123 567776632221 35789999988532 22223 38999999
Q ss_pred cccccEEEEE
Q 002886 240 KYGTNLLQAV 249 (870)
Q Consensus 240 K~G~N~IqIv 249 (870)
|.|.|.|.|.
T Consensus 179 k~G~N~L~V~ 188 (1024)
T 1yq2_A 179 RAGSNLLVVR 188 (1024)
T ss_dssp CSEEEEEEEE
T ss_pred cCCCcEEEEE
Confidence 9999999875
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=49.63 E-value=5.1 Score=35.72 Aligned_cols=51 Identities=20% Similarity=0.512 Sum_probs=36.6
Q ss_pred cccCCCcccccccCC------CCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCee
Q 002886 299 SLNCPISYKRINTPV------KGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 299 SL~CPIS~~RIkiPv------RG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL~ 354 (870)
.+.|||-...++.|+ .-..|.|.=|++ ++.||.. ...||+|.+.+..++|+
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----CCCCCCCCCcCChhcce
Confidence 456888888777662 344688877775 4566654 34899999999888765
No 61
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A
Probab=49.63 E-value=14 Score=45.34 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=44.8
Q ss_pred CCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCC--cccccccccc
Q 002886 164 GYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQL--PTNVSPMLKY 241 (870)
Q Consensus 164 G~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~--PIDIT~~LK~ 241 (870)
|.+.+.-.|.|.+.+ ..+++.|...-.+ ...++.|||+.|-.. .|--. -+|||++||.
T Consensus 126 ~~~~Yrr~F~vp~~~---~g~~v~L~F~gv~-----------~~a~V~vNG~~vG~~------~gg~~p~~~DIT~~L~~ 185 (1010)
T 3bga_A 126 EVGSYRRTFKVPADW---KGRRVVLCCEGVI-----------SFYYVWVNGKLLGYN------QGSKTAAEWDITDVLSE 185 (1010)
T ss_dssp EEEEEEEEEECCGGG---TTSEEEEEESCEE-----------SEEEEEETTEEEEEE------ECSSSCEEEECGGGCCS
T ss_pred cEEEEEEEeEeCccc---CCCEEEEEECCCC-----------ceeEEEECCEEEeeE------eCCCCcceeehhhhccC
Confidence 456677788887664 3566777663221 135789999988532 22223 3899999999
Q ss_pred cccEEEEE
Q 002886 242 GTNLLQAV 249 (870)
Q Consensus 242 G~N~IqIv 249 (870)
|.|.|.|.
T Consensus 186 G~N~L~V~ 193 (1010)
T 3bga_A 186 GENVVALE 193 (1010)
T ss_dssp SEEEEEEE
T ss_pred CCcEEEEE
Confidence 99999874
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=49.49 E-value=7.1 Score=31.87 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=30.4
Q ss_pred cccCCCcccccccCCC-CCCcCcc-cccchHHHHHHHcCCCcccccCCCCccC
Q 002886 299 SLNCPISYKRINTPVK-GHSCRHH-QCFDFSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 299 SL~CPIS~~RIkiPvR-G~~CkHL-QCFDL~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
.-.|+|-+.+.+.++= -.-|.|+ =|++-..-+.. ..++||+|.+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK----AGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH----TTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH----hCCcCCCcCchhh
Confidence 4468887776655541 1268997 56665554432 2379999999874
No 63
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Probab=46.56 E-value=28 Score=40.05 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCccccccccccc
Q 002886 163 PGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYG 242 (870)
Q Consensus 163 pG~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~PIDIT~~LK~G 242 (870)
.|.+-+.-.|.|.+.+ ..+++.|...-.+. ..++.|||+.|-...+- -+..-+|||++||.|
T Consensus 66 ~G~~wY~~~f~~p~~~---~~~~~~L~f~gv~~-----------~a~V~vNG~~vg~~~~~----~~p~~~dit~~l~~G 127 (605)
T 3lpf_A 66 AGNVWYQREVFIPKGW---AGQRIVLRFDAVTH-----------YGKVWVNNQEVMEHQGG----YTPFEADVTPYVIAG 127 (605)
T ss_dssp CSEEEEEEEEECCTTC---SSCEEEEEESCCBS-----------EEEEEESSCEEEEECCS----SSCEEEECGGGCCTT
T ss_pred ceEEEEEEEEECCccc---CCCEEEEEECCcce-----------EEEEEECCEEEEEEcCC----CCcceeechhhccCC
Confidence 3445666778886553 34567666643221 35688999988642110 022348999999999
Q ss_pred cc-EEEEE
Q 002886 243 TN-LLQAV 249 (870)
Q Consensus 243 ~N-~IqIv 249 (870)
.| .|.|.
T Consensus 128 ~nn~l~V~ 135 (605)
T 3lpf_A 128 KSVRITVC 135 (605)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEE
Confidence 86 67764
No 64
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.92 E-value=3.8 Score=33.24 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=31.1
Q ss_pred cccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCC
Q 002886 299 SLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTD 352 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~d 352 (870)
.+.|||-+..+.. .-..|.|.=|. .=+.... .....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~--~Ci~~~~--~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQ--KCIDKWS--DRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECH--HHHHHSS--CCCSSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccH--HHHHHHH--HCcCcCCCcCCcccCCC
Confidence 5679988887766 55678886443 2222221 24678999998876544
No 65
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Probab=42.16 E-value=18 Score=44.47 Aligned_cols=68 Identities=19% Similarity=0.410 Sum_probs=45.3
Q ss_pred CCCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCc--cccccccc
Q 002886 163 PGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLP--TNVSPMLK 240 (870)
Q Consensus 163 pG~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~P--IDIT~~LK 240 (870)
.|.|.+...|.+.+.+. ..+++.|...-.+ ...++.|||+.|-.. .|--.| +|||++||
T Consensus 118 ~~~g~Yrr~F~vp~~~~--~~~~v~L~F~gv~-----------~~a~V~vNG~~vG~~------~gg~~p~~~DIT~~L~ 178 (1023)
T 1jz7_A 118 NPTGCYSLTFNVDESWL--QEGQTRIIFDGVN-----------SAFHLWCNGRWVGYG------QDSRLPSEFDLSAFLR 178 (1023)
T ss_dssp CCEEEEEEEEEECHHHH--HSSEEEEEESCEE-----------SEEEEEETTEEEEEE------ECTTSCEEEECTTTCC
T ss_pred CcEEEEEEEEEeCchhc--CCCEEEEEECCCC-----------cceEEEECCEEEccc------cCCCCceEEecHhhcc
Confidence 45677888898876532 1356766653221 135789999988532 222223 89999999
Q ss_pred ccccEEEEE
Q 002886 241 YGTNLLQAV 249 (870)
Q Consensus 241 ~G~N~IqIv 249 (870)
.|.|.|.|.
T Consensus 179 ~G~N~L~V~ 187 (1023)
T 1jz7_A 179 AGENRLAVM 187 (1023)
T ss_dssp SEEEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999874
No 66
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.31 E-value=13 Score=31.47 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=19.1
Q ss_pred CcCcccccc-hHHHHHHHcCCCcccccCCCCccCcCCe
Q 002886 317 SCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCYTDI 353 (870)
Q Consensus 317 ~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~~dL 353 (870)
.|.|.=+++ +..||..+ -.||+|.+.+.+.++
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN-----NRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC-----CBCTTTCCBCCEEEE
T ss_pred CCCCccChHHHHHHHHhC-----CCCCCcCCCcchhhc
Confidence 487742222 33454432 289999999876654
No 67
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Probab=39.93 E-value=28 Score=41.73 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=43.3
Q ss_pred ceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCc--ccccccccccc
Q 002886 166 GAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLP--TNVSPMLKYGT 243 (870)
Q Consensus 166 g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~P--IDIT~~LK~G~ 243 (870)
+.+.-.|.+.+.+ ...+++.|...-.+. ..++.|||+.|-... |--.| +|||++||.|.
T Consensus 66 ~~Yr~~f~~p~~~--~~~~~~~L~f~gv~~-----------~a~V~vNG~~vg~~~------~~~~~~~~dIt~~l~~G~ 126 (848)
T 2je8_A 66 WEYRTSFIVSEEQ--LNRDGIQLIFEGLDT-----------YADVYLNGSLLLKAD------NMFVGYTLPVKSVLRKGE 126 (848)
T ss_dssp EEEEEEEEECHHH--HTSSEEEEEESCCBS-----------EEEEEETTEEEEEEC------BTTCCEEEECGGGCCSEE
T ss_pred EEEEEEEEcChhh--cCCCeEEEEECCCCc-----------eeEEEECCEEecccc------CCCCCEEEcChHhhcCCC
Confidence 3566788887542 134567776643222 357889999886432 22233 89999999999
Q ss_pred cEEEEE
Q 002886 244 NLLQAV 249 (870)
Q Consensus 244 N~IqIv 249 (870)
|.|.|.
T Consensus 127 N~L~V~ 132 (848)
T 2je8_A 127 NHLYIY 132 (848)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999875
No 68
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=39.70 E-value=41 Score=41.27 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCC--CCcccccccccc
Q 002886 164 GYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGP--QLPTNVSPMLKY 241 (870)
Q Consensus 164 G~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~--d~PIDIT~~LK~ 241 (870)
|.+.+...|.+ . ...+++.|...-.+. ..++.|||+.|-... .|.|- ..-+|||++||.
T Consensus 119 ~~~wYrr~f~v--~---~~~~~v~L~F~gvd~-----------~a~V~vNG~~vg~~~---~h~g~~~~~~~DIt~~l~~ 179 (1032)
T 2vzs_A 119 VPWWYRTDLNV--D---DTSSRTYLDFSGVLS-----------KADVWVNGTKVATKD---QVNGAYTRHDLDITAQVHT 179 (1032)
T ss_dssp SCEEEEEEEEE--S---CCSSEEEEEECCEES-----------BEEEEETTEEEECTT---TSBSTTCCEEEECTTTCCS
T ss_pred ccEEEEEEEEE--e---CCCCEEEEEECCccc-----------ceEEEECCEEecccc---cccCcceeEEEECcHHhCC
Confidence 45677778888 2 235667666543221 357899999983210 02232 234899999999
Q ss_pred cccEEEEE
Q 002886 242 GTNLLQAV 249 (870)
Q Consensus 242 G~N~IqIv 249 (870)
|.|.|.|.
T Consensus 180 G~N~L~V~ 187 (1032)
T 2vzs_A 180 GVNSVAFK 187 (1032)
T ss_dssp EEEEEEEE
T ss_pred CCcEEEEE
Confidence 99999875
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=38.92 E-value=7.8 Score=42.12 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=30.8
Q ss_pred ecccCCCcccccccCCCCCCcCcc-cccchHHHHHHHcCCCcccccCCCCccC
Q 002886 298 ISLNCPISYKRINTPVKGHSCRHH-QCFDFSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 298 VSL~CPIS~~RIkiPvRG~~CkHL-QCFDL~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
-.+.|||-+..+..|+.- -|.|. =|.+-..- .+.||+|...+.
T Consensus 294 ~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~--------~~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFI-PCGHLVVCQECAPS--------LRKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGG--------CSBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEc-CCCChhHhHHHHhc--------CCcCCCCCCCcc
Confidence 358899999988877765 68887 55543321 178999999874
No 70
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=38.54 E-value=16 Score=31.61 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=27.1
Q ss_pred cccCCCccccccc--CCCCCCcCcccccc-hHHHHHHHcCCCcccccCCCCccCc
Q 002886 299 SLNCPISYKRINT--PVKGHSCRHHQCFD-FSNYVHINSRRPSWRCPHCNQHVCY 350 (870)
Q Consensus 299 SL~CPIS~~RIki--PvRG~~CkHLQCFD-L~sFL~~n~qkptW~CPIC~k~~~~ 350 (870)
...|||-+..+.. .++-..|.|.=|++ +..||.. .-.||+|.+.+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-----SGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-----TCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-----CCcCcCcCccCCC
Confidence 4568887655543 12223477754333 3345532 2389999988754
No 71
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Probab=38.39 E-value=17 Score=44.76 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCCceeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCc--cccccccc
Q 002886 163 PGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLP--TNVSPMLK 240 (870)
Q Consensus 163 pG~g~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~P--IDIT~~LK 240 (870)
.|.|.+.-.|.|.+.++ ..++++|...-.+ ...++.|||+.|-.. .|--.| +|||++||
T Consensus 111 n~~g~Yrr~f~vp~~~~--~~~~v~L~F~gv~-----------~~a~V~vNG~~vG~~------~gg~~p~~~DIT~~lk 171 (1032)
T 3oba_A 111 NPTGVYARTFELDSKSI--ESFEHRLRFEGVD-----------NCYELYVNGQYVGFN------KGSRNGAEFDIQKYVS 171 (1032)
T ss_dssp CCEEEEEEEEEECHHHH--HHEEEEEEESCEE-----------SEEEEEETTEEEEEE------ECTTSCEEEECTTTCC
T ss_pred CCeEEEEEEEEECchhc--CCCEEEEEECCcc-----------eeEEEEECCEEEEEE------eCCcccEEEEChhhcc
Confidence 45677788899976531 2456766653221 135788999988532 222233 89999999
Q ss_pred ccccEEEEE
Q 002886 241 YGTNLLQAV 249 (870)
Q Consensus 241 ~G~N~IqIv 249 (870)
.|.|.|.|.
T Consensus 172 ~G~N~L~V~ 180 (1032)
T 3oba_A 172 EGENLVVVK 180 (1032)
T ss_dssp SEEEEEEEE
T ss_pred CCcEEEEEE
Confidence 999999874
No 72
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Probab=38.11 E-value=17 Score=41.51 Aligned_cols=68 Identities=9% Similarity=0.110 Sum_probs=41.4
Q ss_pred eeeEEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCCCCCCcccccccccccc---
Q 002886 167 AFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGT--- 243 (870)
Q Consensus 167 ~~~idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kpG~d~PIDIT~~LK~G~--- 243 (870)
-+...|.|.+.+.....+++.|...-.+. ..++.|||+.|-...+- -+..-+|||++||.|.
T Consensus 80 wYr~~f~~p~~~~~~~~~~~~L~f~gv~~-----------~a~V~vNG~~vg~~~~g----~~~~~~dit~~l~~g~~~~ 144 (613)
T 3hn3_A 80 WYEREVILPERWTQDLRTRVVLRIGSAHS-----------YAIVWVNGVDTLEHEGG----YLPFEADISNLVQVGPLPS 144 (613)
T ss_dssp EEEEEECCCHHHHHCTTEEEEEEESCCCS-----------EEEEEETTEEEEEEESS----SSCEEEECHHHHCCC---C
T ss_pred EEEEEEEeCchhhhcCCCEEEEEECCcce-----------EEEEEECCEEEeEEcCC----cceEEEEChhhhcCCCCCc
Confidence 56667777665432335667666643221 35688999988532110 0223489999999985
Q ss_pred -cEEEEE
Q 002886 244 -NLLQAV 249 (870)
Q Consensus 244 -N~IqIv 249 (870)
|.|.|.
T Consensus 145 ~n~l~V~ 151 (613)
T 3hn3_A 145 RLRITIA 151 (613)
T ss_dssp CEEEEEE
T ss_pred ceEEEEE
Confidence 887663
No 73
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=38.05 E-value=14 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=30.1
Q ss_pred ccCCCcccccccCCCC-CCcCcc-cccchHHHHHHHcCCCcccccCCCCccC
Q 002886 300 LNCPISYKRINTPVKG-HSCRHH-QCFDFSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 300 L~CPIS~~RIkiPvRG-~~CkHL-QCFDL~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
..|+|-+...+.++-- .-|.|+ =|++=..-+.. ..+.||+|.+++.
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~ 56 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQ 56 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCC
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchh
Confidence 4588877777666531 269998 46654443332 3578999999874
No 74
>2rpq_B Activating transcription factor 7-interacting protein 1; SUMO, SIM, nucleus, UBL conjugation, UBL conjugation pathway, activator; NMR {Homo sapiens}
Probab=34.70 E-value=10 Score=30.81 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.1
Q ss_pred CCeEEeCCCCCcccc
Q 002886 418 NPVILDLTKNDDEID 432 (870)
Q Consensus 418 ~p~VIDLt~DDDE~D 432 (870)
..-|||||.||+|..
T Consensus 31 sgGVIDLTlDdEe~g 45 (49)
T 2rpq_B 31 SSGVIDLTMDDEESG 45 (49)
T ss_pred CCceEEeeecchhcc
Confidence 346999999998864
No 75
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.89 E-value=14 Score=29.65 Aligned_cols=11 Identities=36% Similarity=1.183 Sum_probs=9.1
Q ss_pred CcccccCCCCc
Q 002886 337 PSWRCPHCNQH 347 (870)
Q Consensus 337 ptW~CPIC~k~ 347 (870)
..|.||+|+..
T Consensus 29 ~dw~CP~Cg~~ 39 (46)
T 6rxn_A 29 DDWCCPVCGVS 39 (46)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCcCCCCc
Confidence 46999999964
No 76
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}
Probab=31.13 E-value=1.7e+02 Score=34.23 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=47.0
Q ss_pred EEEEeecccccCCCceEEEEEEecCCCCCcceeeCCCcEEEEEcCceeccccccCCCC--CC-----CCccccc-ccccc
Q 002886 170 IDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDP--GP-----QLPTNVS-PMLKY 241 (870)
Q Consensus 170 idF~IsKs~~~~sq~kLrLfc~q~d~~~~s~ci~wP~~I~IkVNGk~Ie~rrnvk~kp--G~-----d~PIDIT-~~LK~ 241 (870)
+.|+|..-.-....-.|||-++...... ....+.|||+.++...+.++.- ++ .+.|.|. .+|+.
T Consensus 491 ~~F~i~~v~tg~g~A~LRvg~gR~~g~s--------~~p~V~vNG~~v~vP~~w~g~dq~~r~~fFg~ieipVp~~lL~~ 562 (591)
T 4aw7_A 491 LSFPFTGIESGSGRASLRMSIGRPVSAS--------KKPVVKINGTAVSVPDNWKGYGQSNRNIFFGMIEVPFDIQLLKN 562 (591)
T ss_dssp EEEEEEEECCCSEEEEEEEEEEEETTSC--------SCCEEEETTEEECCCSCCSSCCCTTSSEEEEEEEEEECGGGCCS
T ss_pred eEEEEecccCCCceEEEEEEcCcCCCcC--------CCCEEEECCEEeccCcccccccccChhhceEEEEecCCHHHHhc
Confidence 4465542211123345777777654433 2346999999998766554321 11 2235553 55565
Q ss_pred cccEEEEEeeeCceEEEEEE
Q 002886 242 GTNLLQAVGQFNGHYIIIVA 261 (870)
Q Consensus 242 G~N~IqIv~~fn~~YiiaV~ 261 (870)
+.|+|+|.-.-++.|+-.|.
T Consensus 563 ~~NtI~VtFPD~GG~VsSv~ 582 (591)
T 4aw7_A 563 GDNNVDITFSDGGGHVSSMI 582 (591)
T ss_dssp EEEEEEEECSSCCSEEEEEE
T ss_pred CCCeEEEEecCCCCeEEEEE
Confidence 88999987544455654443
No 77
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=31.13 E-value=20 Score=39.81 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=35.4
Q ss_pred cccCCCcccccccCCCCCCcCcccccch-HHHHHHHcCCCcccccCCCCccCcCCe
Q 002886 299 SLNCPISYKRINTPVKGHSCRHHQCFDF-SNYVHINSRRPSWRCPHCNQHVCYTDI 353 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHLQCFDL-~sFL~~n~qkptW~CPIC~k~~~~~dL 353 (870)
.+.|||-+..++.|+. ..|.|.=|.+- ..|+.. ..-.||+|.+.+....+
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCcee
Confidence 4799999988888765 57888766553 344442 34579999998876544
No 78
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=31.11 E-value=13 Score=31.86 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=28.6
Q ss_pred cccCCCcccccccCCCCCCcCcc-cccchHHHHHHHcCCCcccccCCCCccCc
Q 002886 299 SLNCPISYKRINTPVKGHSCRHH-QCFDFSNYVHINSRRPSWRCPHCNQHVCY 350 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG~~CkHL-QCFDL~sFL~~n~qkptW~CPIC~k~~~~ 350 (870)
.+.|+|=+...+.|+- .-|.|. =|++-.. ..|.||+|.+.+.-
T Consensus 18 ~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhhC
Confidence 4578888777766654 368887 4554322 23699999998743
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=30.47 E-value=52 Score=40.58 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=52.2
Q ss_pred cceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHH
Q 002886 295 PSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLRE 365 (870)
Q Consensus 295 s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~ 365 (870)
...=.+.||||+..|+-||---.-+ ++||-.+...--...+ .||+-++++..++|+-+.-+++.+++
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~--~TydR~~I~~wl~~~~--tdP~Tr~~L~~~~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASK--MNIDRSTIKAHLLSDS--TDPFNRMPLKLEDVTPNEELRQKILC 953 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTC--CEEEHHHHHHHHTTCC--BCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCC--EEECHHHHHHHHhcCC--CCCCCCCCCCcccccccHHHHHHHHH
Confidence 3445789999999999999853333 5899888776554433 79999999999999988888777665
No 80
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=27.98 E-value=15 Score=32.50 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=8.9
Q ss_pred CCCcccccCCC
Q 002886 335 RRPSWRCPHCN 345 (870)
Q Consensus 335 qkptW~CPIC~ 345 (870)
...+|.||||.
T Consensus 14 ~~~tWVCpICs 24 (76)
T 2j9u_B 14 VVSTWVCPICM 24 (76)
T ss_dssp -CEEEECTTTC
T ss_pred cccceECcccc
Confidence 35799999998
No 81
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.94 E-value=18 Score=31.22 Aligned_cols=55 Identities=18% Similarity=0.418 Sum_probs=37.9
Q ss_pred cccCCCcccccccCCCC--CCcCcccccc-hHHHHHHH--cC-CCcccccC--CCCc--cCcCCe
Q 002886 299 SLNCPISYKRINTPVKG--HSCRHHQCFD-FSNYVHIN--SR-RPSWRCPH--CNQH--VCYTDI 353 (870)
Q Consensus 299 SL~CPIS~~RIkiPvRG--~~CkHLQCFD-L~sFL~~n--~q-kptW~CPI--C~k~--~~~~dL 353 (870)
.+.|||=+..+..|.-- ..|.|.=|.+ +..|+... .. ....+||. |... +.++++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 46799998887777543 3699977765 56777764 22 24579999 9988 655443
No 82
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.16 E-value=35 Score=28.27 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=23.7
Q ss_pred ccCCCcccccccCCCCCCcCcc-cccchHHHHHHHcCCCcccccCCCCccC
Q 002886 300 LNCPISYKRINTPVKGHSCRHH-QCFDFSNYVHINSRRPSWRCPHCNQHVC 349 (870)
Q Consensus 300 L~CPIS~~RIkiPvRG~~CkHL-QCFDL~sFL~~n~qkptW~CPIC~k~~~ 349 (870)
..|+|=+...+.++ -.-|.|+ =|.+-.. ..++||+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVNWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCCCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCcCcCCCCEE-EECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 45777665544322 2346665 3443332 1489999998874
No 83
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.91 E-value=10 Score=34.21 Aligned_cols=17 Identities=18% Similarity=0.622 Sum_probs=13.5
Q ss_pred cccccCCCCccCcCCee
Q 002886 338 SWRCPHCNQHVCYTDIR 354 (870)
Q Consensus 338 tW~CPIC~k~~~~~dL~ 354 (870)
..+||+|++.+...+|+
T Consensus 8 ~~~~PlCG~~L~W~eLI 24 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELI 24 (95)
T ss_dssp CEECSSSCCEECHHHHH
T ss_pred cccCCcCCCccCHHHHH
Confidence 36899999999876663
No 84
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.68 E-value=22 Score=29.39 Aligned_cols=11 Identities=36% Similarity=1.156 Sum_probs=9.3
Q ss_pred CcccccCCCCc
Q 002886 337 PSWRCPHCNQH 347 (870)
Q Consensus 337 ptW~CPIC~k~ 347 (870)
..|.||+|+..
T Consensus 35 ~dw~CP~Cg~~ 45 (54)
T 4rxn_A 35 DDWVCPLCGVG 45 (54)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCcCCCCc
Confidence 47999999964
No 85
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=24.21 E-value=23 Score=28.91 Aligned_cols=11 Identities=36% Similarity=1.205 Sum_probs=9.3
Q ss_pred CcccccCCCCc
Q 002886 337 PSWRCPHCNQH 347 (870)
Q Consensus 337 ptW~CPIC~k~ 347 (870)
..|.||+|+..
T Consensus 34 ~dw~CP~Cg~~ 44 (52)
T 1yk4_A 34 DDWVCPLCGAP 44 (52)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 47999999964
No 86
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=23.95 E-value=8.1 Score=32.32 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=11.0
Q ss_pred cCCCcccccCCCCc
Q 002886 334 SRRPSWRCPHCNQH 347 (870)
Q Consensus 334 ~qkptW~CPIC~k~ 347 (870)
....+|+||+|+..
T Consensus 29 ~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 29 YRAKLWACNFCYQR 42 (59)
T ss_dssp GGGTEEECSSSCCE
T ss_pred CCCCEEEcccCCCc
Confidence 34579999999864
No 87
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.94 E-value=23 Score=29.25 Aligned_cols=11 Identities=36% Similarity=1.256 Sum_probs=9.2
Q ss_pred CcccccCCCCc
Q 002886 337 PSWRCPHCNQH 347 (870)
Q Consensus 337 ptW~CPIC~k~ 347 (870)
..|.||+|+..
T Consensus 35 ~dw~CP~Cga~ 45 (55)
T 2v3b_B 35 ADWVCPDCGVG 45 (55)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 47999999964
No 88
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.89 E-value=23 Score=28.85 Aligned_cols=11 Identities=36% Similarity=1.271 Sum_probs=9.2
Q ss_pred CcccccCCCCc
Q 002886 337 PSWRCPHCNQH 347 (870)
Q Consensus 337 ptW~CPIC~k~ 347 (870)
..|.||+|+..
T Consensus 35 ~dw~CP~Cg~~ 45 (52)
T 1e8j_A 35 DDWACPVCGAS 45 (52)
T ss_dssp TTCCCSSSCCC
T ss_pred CCCcCCCCCCc
Confidence 47999999964
No 89
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.50 E-value=24 Score=30.50 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=9.3
Q ss_pred CcccccCCCCc
Q 002886 337 PSWRCPHCNQH 347 (870)
Q Consensus 337 ptW~CPIC~k~ 347 (870)
..|.||+|+..
T Consensus 39 ddw~CP~Cga~ 49 (70)
T 1dx8_A 39 DSFMCPACRSP 49 (70)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 47999999965
No 90
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.12 E-value=23 Score=31.51 Aligned_cols=11 Identities=36% Similarity=1.337 Sum_probs=9.2
Q ss_pred CcccccCCCCc
Q 002886 337 PSWRCPHCNQH 347 (870)
Q Consensus 337 ptW~CPIC~k~ 347 (870)
..|.||+|+..
T Consensus 59 ddW~CPvCga~ 69 (81)
T 2kn9_A 59 DDWSCPDCGAA 69 (81)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 47999999964
No 91
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.64 E-value=55 Score=28.21 Aligned_cols=38 Identities=16% Similarity=0.421 Sum_probs=26.1
Q ss_pred cccCCCC---CCcCcccccchHHHHHHHcCCCcccccCCCCccCcC
Q 002886 309 INTPVKG---HSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYT 351 (870)
Q Consensus 309 IkiPvRG---~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~ 351 (870)
+..|++- .+--|..|. +.||... ....||+|...+.++
T Consensus 31 l~~pC~C~Gs~h~fH~~Cl--~~Wl~~~---~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 31 LITPCHCTGSLHFVHQACL--QQWIKSS---DTRCCELCKYEFIME 71 (80)
T ss_dssp EECSSSCCSSSCCEETTHH--HHHHHHH---CCSBCSSSCCBCCCC
T ss_pred eEeccccCCcCCeeCHHHH--HHHHhhC---CCCCCCCCCCeeecC
Confidence 3467763 356788887 4677654 356899999987654
Done!