Query 002889
Match_columns 870
No_of_seqs 197 out of 263
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 12:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175 Protein predicted to b 100.0 1.1E-95 2E-100 808.5 30.4 442 153-611 5-457 (458)
2 PF04802 SMK-1: Component of I 100.0 5.3E-64 1.1E-68 511.2 17.6 190 167-356 3-193 (193)
3 cd00835 RanBD Ran-binding doma 98.5 7.5E-07 1.6E-11 85.5 9.7 97 15-111 16-121 (122)
4 PF00638 Ran_BP1: RanBP1 domai 98.1 1.2E-05 2.6E-10 76.7 9.8 98 15-112 15-121 (122)
5 smart00160 RanBD Ran-binding d 97.5 0.00045 9.7E-09 67.4 9.3 94 15-108 25-128 (130)
6 cd00837 EVH1 EVH1 (Enabled, Va 97.5 0.00074 1.6E-08 63.4 10.2 94 14-109 6-102 (104)
7 PF00568 WH1: WH1 domain; Int 97.5 0.00075 1.6E-08 64.0 9.9 94 15-110 14-110 (111)
8 PF10508 Proteasom_PSMB: Prote 96.1 0.65 1.4E-05 55.1 21.7 201 358-592 75-278 (503)
9 KOG2160 Armadillo/beta-catenin 95.3 1.6 3.6E-05 49.3 19.9 193 315-545 88-281 (342)
10 KOG2175 Protein predicted to b 95.2 0.13 2.8E-06 59.7 11.2 263 331-614 7-304 (458)
11 smart00461 WH1 WASP homology r 94.9 0.17 3.6E-06 47.9 9.1 95 12-109 8-104 (106)
12 PF01602 Adaptin_N: Adaptin N 93.4 1.2 2.7E-05 51.8 14.3 231 361-627 115-372 (526)
13 KOG0166 Karyopherin (importin) 91.8 16 0.00035 43.7 20.4 241 310-592 196-436 (514)
14 PF01602 Adaptin_N: Adaptin N 91.8 8.3 0.00018 45.0 18.3 225 310-591 116-349 (526)
15 PF10508 Proteasom_PSMB: Prote 91.5 31 0.00067 41.2 22.8 169 351-549 193-369 (503)
16 PF03224 V-ATPase_H_N: V-ATPas 91.4 12 0.00025 41.6 18.0 252 277-563 23-286 (312)
17 cd01207 Ena-Vasp Enabled-VASP- 90.8 2 4.3E-05 41.5 9.6 92 16-110 8-106 (111)
18 PTZ00429 beta-adaptin; Provisi 90.3 60 0.0013 40.9 25.5 159 346-545 119-284 (746)
19 PF12460 MMS19_C: RNAPII trans 90.0 43 0.00094 38.8 23.2 242 280-556 109-404 (415)
20 PF04499 SAPS: SIT4 phosphatas 89.7 51 0.0011 39.3 23.9 282 290-604 3-394 (475)
21 cd00020 ARM Armadillo/beta-cat 89.3 8.7 0.00019 34.7 12.5 111 309-434 8-118 (120)
22 PF14664 RICTOR_N: Rapamycin-i 85.4 11 0.00024 43.4 13.0 145 298-467 47-200 (371)
23 PF06058 DCP1: Dcp1-like decap 82.2 6.1 0.00013 38.6 8.0 90 16-110 28-121 (122)
24 COG5240 SEC21 Vesicle coat com 81.3 55 0.0012 39.8 16.5 144 278-435 230-403 (898)
25 cd01205 WASP WASP-type EVH1 do 80.0 16 0.00034 35.0 9.7 91 15-107 10-101 (105)
26 PF05804 KAP: Kinesin-associat 79.7 1.8E+02 0.0039 36.7 23.5 112 355-467 285-423 (708)
27 PF12348 CLASP_N: CLASP N term 79.1 85 0.0018 32.6 15.9 186 318-544 15-204 (228)
28 cd00020 ARM Armadillo/beta-cat 73.3 14 0.00031 33.3 7.3 74 513-589 3-76 (120)
29 KOG2085 Serine/threonine prote 71.8 23 0.00051 41.2 9.9 232 139-397 146-422 (457)
30 PLN03200 cellulose synthase-in 70.3 4.7E+02 0.01 37.1 27.9 214 358-603 607-841 (2102)
31 PF11707 Npa1: Ribosome 60S bi 70.2 1.8E+02 0.0039 32.9 16.6 219 298-545 48-302 (330)
32 PF08569 Mo25: Mo25-like; Int 68.3 2.1E+02 0.0046 32.7 16.6 169 350-545 66-282 (335)
33 cd01206 Homer Homer type EVH1 68.2 31 0.00068 33.4 8.4 95 15-109 9-105 (111)
34 PLN03200 cellulose synthase-in 67.7 5.3E+02 0.011 36.6 24.7 224 307-571 57-285 (2102)
35 KOG2734 Uncharacterized conser 67.2 2.8E+02 0.006 33.2 19.4 200 350-572 166-373 (536)
36 KOG1062 Vesicle coat complex A 65.5 3.3E+02 0.0072 34.7 18.2 125 359-506 141-266 (866)
37 KOG1991 Nuclear transport rece 60.7 4.3E+02 0.0093 34.4 18.3 63 367-438 469-534 (1010)
38 PF04499 SAPS: SIT4 phosphatas 59.9 32 0.0007 40.9 8.5 275 294-572 49-409 (475)
39 PF11841 DUF3361: Domain of un 59.2 1.6E+02 0.0035 30.4 12.2 103 351-460 39-153 (160)
40 KOG2073 SAP family cell cycle 55.9 5.6E+02 0.012 33.0 19.2 130 287-436 79-220 (838)
41 KOG0168 Putative ubiquitin fus 54.4 2E+02 0.0043 36.9 13.8 108 446-570 546-653 (1051)
42 PF04821 TIMELESS: Timeless pr 54.3 2E+02 0.0044 31.6 12.9 71 420-507 133-212 (266)
43 PF13251 DUF4042: Domain of un 53.8 1.8E+02 0.004 30.4 11.9 160 375-548 1-176 (182)
44 PF01603 B56: Protein phosphat 53.2 1.1E+02 0.0024 35.7 11.3 192 167-397 131-378 (409)
45 PF04826 Arm_2: Armadillo-like 52.6 3.5E+02 0.0076 29.7 17.1 70 518-591 135-204 (254)
46 cd00256 VATPase_H VATPase_H, r 49.3 5.2E+02 0.011 30.7 25.8 199 324-562 68-279 (429)
47 KOG1293 Proteins containing ar 48.7 85 0.0018 38.7 9.5 115 487-613 436-553 (678)
48 PF11707 Npa1: Ribosome 60S bi 48.2 4.5E+02 0.0098 29.7 15.8 170 350-545 47-236 (330)
49 KOG0166 Karyopherin (importin) 47.7 6E+02 0.013 31.0 22.1 200 353-584 145-344 (514)
50 PF02985 HEAT: HEAT repeat; I 47.2 23 0.00049 25.9 3.0 30 361-390 1-30 (31)
51 PF12460 MMS19_C: RNAPII trans 46.3 3.3E+02 0.0072 31.6 13.8 63 332-399 342-404 (415)
52 PF12922 Cnd1_N: non-SMC mitot 46.2 56 0.0012 33.2 6.7 64 426-508 100-167 (171)
53 PF10257 RAI16-like: Retinoic 45.7 50 0.0011 37.8 6.8 91 511-604 3-99 (353)
54 PF00790 VHS: VHS domain; Int 44.5 3.1E+02 0.0066 27.0 11.4 109 310-435 6-117 (140)
55 PF12755 Vac14_Fab1_bd: Vacuol 44.1 89 0.0019 29.3 7.1 67 361-434 28-94 (97)
56 PF05536 Neurochondrin: Neuroc 43.9 6.8E+02 0.015 30.5 18.1 205 308-549 5-216 (543)
57 KOG2171 Karyopherin (importin) 43.8 9.2E+02 0.02 32.0 20.3 271 283-612 178-486 (1075)
58 cd03568 VHS_STAM VHS domain fa 43.4 2.3E+02 0.005 28.4 10.4 107 312-435 3-109 (144)
59 smart00638 LPD_N Lipoprotein N 43.4 1.5E+02 0.0033 35.6 10.8 75 327-401 440-521 (574)
60 PF11894 DUF3414: Protein of u 42.3 1.1E+03 0.023 32.9 19.5 54 381-435 585-638 (1691)
61 KOG1248 Uncharacterized conser 42.2 9.9E+02 0.022 31.9 24.0 32 518-549 828-859 (1176)
62 PF13001 Ecm29: Proteasome sta 40.9 75 0.0016 38.0 7.6 129 296-435 300-442 (501)
63 PF12719 Cnd3: Nuclear condens 40.7 5.4E+02 0.012 28.4 14.0 102 323-438 40-145 (298)
64 KOG2724 Nuclear pore complex c 40.2 40 0.00086 39.4 4.8 94 15-110 386-485 (487)
65 KOG1061 Vesicle coat complex A 39.4 1.6E+02 0.0035 37.0 10.0 249 361-631 122-422 (734)
66 COG5171 YRB1 Ran GTPase-activa 39.3 17 0.00036 37.8 1.6 53 15-67 95-148 (211)
67 PF14500 MMS19_N: Dos2-interac 38.0 4.5E+02 0.0098 28.9 12.5 164 365-569 4-168 (262)
68 KOG0946 ER-Golgi vesicle-tethe 34.8 1.1E+03 0.024 30.4 18.1 252 283-556 141-409 (970)
69 PF08167 RIX1: rRNA processing 34.4 3.9E+02 0.0084 27.1 10.6 124 363-512 28-152 (165)
70 cd03569 VHS_Hrs_Vps27p VHS dom 34.1 4.9E+02 0.011 26.0 11.1 109 310-435 5-113 (142)
71 PF04821 TIMELESS: Timeless pr 34.0 2E+02 0.0043 31.7 8.9 87 504-593 96-209 (266)
72 KOG2160 Armadillo/beta-catenin 33.5 1.7E+02 0.0037 33.7 8.4 97 286-393 146-244 (342)
73 KOG4035 Coeffector of mDia Rho 32.9 6.1E+02 0.013 29.8 12.5 219 227-465 125-382 (411)
74 PF08767 CRM1_C: CRM1 C termin 30.1 6.9E+02 0.015 28.2 12.7 62 321-389 131-194 (319)
75 PF13646 HEAT_2: HEAT repeats; 30.0 1.9E+02 0.004 25.0 6.6 55 362-431 33-87 (88)
76 PF08926 DUF1908: Domain of un 30.0 1.2E+02 0.0027 33.7 6.4 50 170-230 192-241 (282)
77 smart00185 ARM Armadillo/beta- 29.9 83 0.0018 23.3 3.8 36 510-545 5-40 (41)
78 cd03561 VHS VHS domain family; 29.7 4.1E+02 0.0089 25.9 9.5 88 334-434 21-110 (133)
79 PF11698 V-ATPase_H_C: V-ATPas 28.8 1.9E+02 0.0041 28.5 6.8 59 487-546 57-115 (119)
80 COG5369 Uncharacterized conser 28.7 1.2E+03 0.026 28.9 15.1 135 286-435 355-501 (743)
81 PF12783 Sec7_N: Guanine nucle 28.6 5.3E+02 0.011 25.8 10.4 79 352-435 65-145 (168)
82 PF15005 IZUMO: Izumo sperm-eg 27.4 1.9E+02 0.004 29.9 6.8 93 221-318 3-100 (160)
83 smart00288 VHS Domain present 26.6 4.5E+02 0.0097 25.8 9.2 76 284-360 57-133 (133)
84 KOG0864 Ran-binding protein RA 26.1 34 0.00073 36.6 1.3 57 15-71 62-121 (215)
85 PF13251 DUF4042: Domain of un 25.7 3.1E+02 0.0068 28.7 8.3 74 363-440 43-135 (182)
86 PF12333 Ipi1_N: Rix1 complex 25.5 3.1E+02 0.0066 25.8 7.5 40 362-401 13-53 (102)
87 PF01347 Vitellogenin_N: Lipop 25.4 1.5E+02 0.0033 35.8 6.8 75 327-401 484-565 (618)
88 KOG2956 CLIP-associating prote 24.9 5.1E+02 0.011 31.3 10.5 88 298-394 310-406 (516)
89 PF06334 Orthopox_A47: Orthopo 24.5 51 0.0011 34.3 2.2 85 144-228 68-180 (244)
90 PF00790 VHS: VHS domain; Int 24.2 5.1E+02 0.011 25.4 9.1 76 284-360 62-140 (140)
91 PF03224 V-ATPase_H_N: V-ATPas 24.1 4.4E+02 0.0095 29.3 9.7 104 487-592 70-180 (312)
92 PF10363 DUF2435: Protein of u 23.9 4E+02 0.0086 24.8 7.8 76 308-395 3-78 (92)
93 COG5111 RPC34 DNA-directed RNA 23.5 33 0.00071 37.2 0.6 52 557-614 183-250 (301)
94 PF04078 Rcd1: Cell differenti 22.9 4E+02 0.0087 29.7 8.7 77 492-569 65-148 (262)
95 PF14278 TetR_C_8: Transcripti 22.9 2E+02 0.0044 24.0 5.4 67 298-369 6-76 (77)
96 COG3479 Phenolic acid decarbox 22.4 46 0.001 33.4 1.4 20 79-99 66-85 (175)
97 PF00514 Arm: Armadillo/beta-c 22.2 1.8E+02 0.0039 22.2 4.4 36 510-545 5-40 (41)
98 cd03567 VHS_GGA VHS domain fam 22.1 8E+02 0.017 24.5 10.9 108 310-434 2-114 (139)
99 PF05505 Ebola_NP: Ebola nucle 22.0 1E+03 0.022 29.2 12.1 21 698-718 461-481 (717)
100 KOG1943 Beta-tubulin folding c 21.9 2E+03 0.042 29.2 15.3 40 265-304 573-614 (1133)
101 PF06371 Drf_GBD: Diaphanous G 21.5 3E+02 0.0065 27.6 7.1 77 491-590 109-185 (187)
102 PF05804 KAP: Kinesin-associat 21.2 3E+02 0.0064 34.8 8.2 75 510-591 324-398 (708)
103 PF12717 Cnd1: non-SMC mitotic 21.0 4.6E+02 0.01 26.7 8.4 74 307-401 24-105 (178)
104 KOG4224 Armadillo repeat prote 20.0 1.5E+03 0.032 26.9 16.3 182 354-570 202-386 (550)
105 KOG0168 Putative ubiquitin fus 20.0 1.6E+03 0.034 29.4 13.7 74 358-435 209-283 (1051)
No 1
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-95 Score=808.46 Aligned_cols=442 Identities=44% Similarity=0.739 Sum_probs=420.7
Q ss_pred ChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCC
Q 002889 153 GIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP 232 (870)
Q Consensus 153 s~~~rerla~~Il~~~~YI~KLl~LF~~cEdle~~e~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VvG~LEYDPe~p 232 (870)
++..|++++.+| ++++||+||+++|+.|||++++++||++|+|+|+|+++|...|+|.||+|++||+|+|||||||++|
T Consensus 5 ~~~~r~~~~~~i-e~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~ 83 (458)
T KOG2175|consen 5 TDQRREKLVLAL-ENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP 83 (458)
T ss_pred cHHHHHHHHHHH-hcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence 345677766544 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhcc--cccchhhHHhHHHHHHHhHHHHHHHhhCCHHHH
Q 002889 233 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI 310 (870)
Q Consensus 233 ~~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLp--RiLDD~t~s~LnSlIffNqveIV~~Lq~d~~FL 310 (870)
++++||+||...++|||||||.||.++.|||||||+||||||||| +++||++++++||+||||+++||++||+|..|+
T Consensus 84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l 163 (458)
T KOG2175|consen 84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL 163 (458)
T ss_pred ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence 998899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002889 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (870)
Q Consensus 311 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iieh 390 (870)
.|||+++++++++.++|++++.|+||||.++|+||++.|.+||++|++.|||+++++++.++|.++|.++|||+..++++
T Consensus 164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~ 243 (458)
T KOG2175|consen 164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM 243 (458)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCc-----chHHHHHHHHhccCChhH--HHHHHHHHHHhcCCCCCCch--hhhHHHHHHHHhhHHHHH
Q 002889 391 DPNLLRSYVVRQEGI-----PLLGLLVKGMITDFGEDM--HCQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI 461 (870)
Q Consensus 391 dP~lvR~~i~~qe~~-----~Ll~~Li~~ll~d~d~gl--k~Ql~eaLk~LLDp~~m~~~--e~d~FL~~FY~~~~~~L~ 461 (870)
+|.++|++.+.++.. .++++++++|+++.++.+ .+|++.++++||||++|.++ ++.+|+++||++|++.+.
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~ 323 (458)
T KOG2175|consen 244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS 323 (458)
T ss_pred CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence 999999999987644 489999999999988755 59999999999999999885 999999999999999999
Q ss_pred HHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHH
Q 002889 462 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV 541 (870)
Q Consensus 462 ~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFl 541 (870)
+|+...... .++++.+..+++++|||+.||+|+||+|+++++++++|+.|+++++++|+++|+||.
T Consensus 324 ~p~~~~~~s--------------~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~ 389 (458)
T KOG2175|consen 324 APLVGNTSS--------------NQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL 389 (458)
T ss_pred Ccchhhccc--------------ccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence 888764211 157788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHHhHhhcc
Q 002889 542 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV 611 (870)
Q Consensus 542 R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~eNik~Li~hlVe~y~~~l~ 611 (870)
|.++.++|++|+||++++ |+|+++.|.+||.||||+|||+|+||||||.||+|+|++|+|++||+.+.
T Consensus 390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999875
No 2
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=5.3e-64 Score=511.16 Aligned_cols=190 Identities=53% Similarity=0.956 Sum_probs=186.8
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCCCc-cchhHhhhhcC
Q 002889 167 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHV-QHHRNFLKEHV 245 (870)
Q Consensus 167 ~~~YI~KLl~LF~~cEdle~~e~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VvG~LEYDPe~p~~-~~HR~fL~~~a 245 (870)
+++||+||+++|++||+++|+++||+||+|||+||+||+++|+|+|++|++||+|||||||||++|++ ++||+||++++
T Consensus 3 ~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~~~ 82 (193)
T PF04802_consen 3 NENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKEKA 82 (193)
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999976 59999999999
Q ss_pred CceeeeecCChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHH
Q 002889 246 VFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE 325 (870)
Q Consensus 246 ~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e 325 (870)
+|||||||+|+++++|||||||+||||||||||+|||+++|+|||+|||||++||++||+|++||++||+++++++++.+
T Consensus 83 ~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~ 162 (193)
T PF04802_consen 83 KFKEVIPIPDPELLSKIHQTYRLQYLKDVVLPRFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDE 162 (193)
T ss_pred CCceeeecCCHHHHHHHHHHHhHHHHHHHHcccccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 002889 326 SKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 356 (870)
Q Consensus 326 ~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~L 356 (870)
+|+|+++||||||++||+||+++|.+||++|
T Consensus 163 ~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L 193 (193)
T PF04802_consen 163 RRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence 9999999999999999999999999999986
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=98.47 E-value=7.5e-07 Score=85.49 Aligned_cols=97 Identities=19% Similarity=0.396 Sum_probs=83.4
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEecCCCc-----
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDPEY----- 86 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~~~----- 86 (870)
.|.|||.+.+ .+.|.++|+|.+.+-.........|++|.+.....+|.+.|.++-.|++++ +.-++|+-.+.
T Consensus 16 ~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~ 95 (122)
T cd00835 16 VRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEP 95 (122)
T ss_pred EEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCC
Confidence 5899999975 378999999999987766567899999999988899999999999999999 89999973221
Q ss_pred -cccccccccCccchhHHHHHHHHHh
Q 002889 87 -STELALSFQEPTGCSYIWDNICNVQ 111 (870)
Q Consensus 87 -g~DlALSFQe~~GC~~IW~~I~~VQ 111 (870)
-.-++|.|..++.|+.+++.|..+|
T Consensus 96 ~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 96 KPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 1248999999999999999998887
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=98.14 E-value=1.2e-05 Score=76.74 Aligned_cols=98 Identities=17% Similarity=0.385 Sum_probs=77.0
Q ss_pred CeeEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEec-----CCC-
Q 002889 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPE- 85 (870)
Q Consensus 15 ~RVKVY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt-----e~~- 85 (870)
.|+|+|.+. ++..|.++|+|.+..-.........|++|.+.....+|.+.|.++-.|+..+ +.-++|+ |.+
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 94 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADEEG 94 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTSSS
T ss_pred EEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCcEEEEEeccccCCCC
Confidence 589999995 3589999999999987765557789999999988999999999999887766 4578893 221
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 002889 86 YSTELALSFQEPTGCSYIWDNICNVQR 112 (870)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~I~~VQ~ 112 (870)
.-.-+++.|..++=+.++...|.+.|.
T Consensus 95 ~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 95 KPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp EEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 124689999999999999999988875
No 5
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=97.52 E-value=0.00045 Score=67.45 Aligned_cols=94 Identities=13% Similarity=0.285 Sum_probs=74.2
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCC-cceeEEEEecCCCcceeEeecCCCCccccccC--eEEEecCCCc----
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERS-EELCLFVIDEEDNETILLHRISPDDIYRKQED--TIISWRDPEY---- 86 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqe--TLIvWte~~~---- 86 (870)
.|.|+|++.+ .+.|.++|+|.+.+-..... ....|++|.+.....+|.+.|.++-.|+.... .-.+|+-.+.
T Consensus 25 ~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~ 104 (130)
T smart00160 25 ARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDI 104 (130)
T ss_pred EEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCC
Confidence 5999999964 57899999999987654434 56899999998889999999999999987654 4667853221
Q ss_pred --cccccccccCccchhHHHHHHH
Q 002889 87 --STELALSFQEPTGCSYIWDNIC 108 (870)
Q Consensus 87 --g~DlALSFQe~~GC~~IW~~I~ 108 (870)
-.-+++-|-.++.+..+++.|.
T Consensus 105 ~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 105 PKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred CceEEEEEEeCCHHHHHHHHHHHH
Confidence 1348999999999998887764
No 6
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.51 E-value=0.00074 Score=63.44 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=80.2
Q ss_pred CCeeEEEEeCC-CCCceec--cceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccc
Q 002889 14 MQRVKVYRLND-DGKWDDQ--GTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 90 (870)
Q Consensus 14 ~~RVKVY~L~~-~~~W~D~--GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~Dl 90 (870)
.-||.||.-++ .+.|.-. |+|-+............|.+++..++..+++..|.++-.|.+...+..+|.+.+ .=+
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~--~~~ 83 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDN--CVY 83 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCC--cEE
Confidence 35899999965 4899999 888888765444456889999999999999999999999999999999999986 469
Q ss_pred cccccCccchhHHHHHHHH
Q 002889 91 ALSFQEPTGCSYIWDNICN 109 (870)
Q Consensus 91 ALSFQe~~GC~~IW~~I~~ 109 (870)
+|+|++.+.+....+.+++
T Consensus 84 GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 84 GLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred EEeeCCHHHHHHHHHHHHh
Confidence 9999999999988777664
No 7
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=97.47 E-value=0.00075 Score=63.96 Aligned_cols=94 Identities=16% Similarity=0.333 Sum_probs=79.5
Q ss_pred CeeEEEEeC--CCCCcee-ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccc
Q 002889 15 QRVKVYRLN--DDGKWDD-QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELA 91 (870)
Q Consensus 15 ~RVKVY~L~--~~~~W~D-~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlA 91 (870)
-+|.||..+ .++.|.- .|+|-|+...........|.+.+-.++..+++..|.++-.|+++..+..+|.+.+ .-++
T Consensus 14 ~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~--~~~G 91 (111)
T PF00568_consen 14 AVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDD--CVYG 91 (111)
T ss_dssp EEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETT--CEEE
T ss_pred EEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCC--eEEE
Confidence 588999983 3445999 9999998776444466788888888999999999999999999999999999986 4899
Q ss_pred ccccCccchhHHHHHHHHH
Q 002889 92 LSFQEPTGCSYIWDNICNV 110 (870)
Q Consensus 92 LSFQe~~GC~~IW~~I~~V 110 (870)
|+|++.+-+....+.|++.
T Consensus 92 LnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 92 LNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHhcc
Confidence 9999999999998888764
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.08 E-value=0.65 Score=55.07 Aligned_cols=201 Identities=11% Similarity=0.144 Sum_probs=142.6
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 002889 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (870)
Q Consensus 358 ~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 437 (870)
..++.+.+..+|.|+++.+|..++-.|..++.|+...++- +. +..++..++..+ .+.|.++......+|+.|...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~~---~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-LV---DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-hc---CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCC
Confidence 4566788999999999999999999888888888664432 22 334666666544 788999999999999999754
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhh
Q 002889 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (870)
Q Consensus 438 ~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~n 517 (870)
.. -++..|+.....-+..++..+ .+.+-..++|+++-...+++... .++...+
T Consensus 150 ~~--------~~~~l~~~~~~~~L~~l~~~~------------------~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sg 202 (503)
T PF10508_consen 150 PE--------GLEQLFDSNLLSKLKSLMSQS------------------SDIVRCRVYELLVEIASHSPEAA-EAVVNSG 202 (503)
T ss_pred ch--------hHHHHhCcchHHHHHHHHhcc------------------CHHHHHHHHHHHHHHHhcCHHHH-HHHHhcc
Confidence 31 222233332222222222210 11233467788887776665544 6677788
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHh--CC-CCcchHHHHHHHHHHHHh
Q 002889 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN--GN-RYNLLNSAVLELFEYIRK 592 (870)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~n--g~-R~NLLnSA~LELfefIr~ 592 (870)
++.+++..+...+-.+++.|+-.+..+...+.. ..||.+.++|.-+.+.+... .+ -..++=...+.||..+-.
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 999999999999999999999999998884443 79999999999999988643 23 355666777788888876
No 9
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=1.6 Score=49.32 Aligned_cols=193 Identities=18% Similarity=0.130 Sum_probs=129.2
Q ss_pred HHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH
Q 002889 315 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL 394 (870)
Q Consensus 315 ~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~l 394 (870)
..+.++..+.++|.++..=|.++|.=-.| -..|+++|.+..+--.+.+.+..+|-.|+.+|.+++..+|-.
T Consensus 88 ~~~~~~s~~le~ke~ald~Le~lve~iDn---------Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~ 158 (342)
T KOG2160|consen 88 VILNSSSVDLEDKEDALDNLEELVEDIDN---------ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS 158 (342)
T ss_pred hccCcccCCHHHHHHHHHHHHHHHHhhhh---------HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 34556777778888887777777653222 236788886666666999999999999999999999999985
Q ss_pred HHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccc
Q 002889 395 LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIA 474 (870)
Q Consensus 395 vR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~ 474 (870)
--. ++.-. .+..|+..+-.+.+.+.++++.-|+-.|+=.... ..-.||=-+....|...+-.+
T Consensus 159 Qe~-v~E~~---~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~------g~~~fl~~~G~~~L~~vl~~~------- 221 (342)
T KOG2160|consen 159 QEQ-VIELG---ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKP------GQDEFLKLNGYQVLRDVLQSN------- 221 (342)
T ss_pred HHH-HHHcc---cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcH------HHHHHHhcCCHHHHHHHHHcC-------
Confidence 443 44322 6677778788888899999999999999844321 111222234455555544331
Q ss_pred cccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHH-HhhhccchhhHHHHHHHHHHHh
Q 002889 475 QSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVL-LLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 475 ~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl-~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
.+...+....+.|++..++.|.+.-. +++.-...+++ .+..+-+-...-+|++..=+.+
T Consensus 222 ----------~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 222 ----------NTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred ----------CcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 12344556788899999999987654 55555555554 3455555566667666655544
No 10
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.13 Score=59.74 Aligned_cols=263 Identities=14% Similarity=0.123 Sum_probs=156.8
Q ss_pred HHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHh-------cC
Q 002889 331 VHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR-------QE 403 (870)
Q Consensus 331 V~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~-------qe 403 (870)
..+.++-|.+.+..+-+.=.++|....+....+-+..+...-..-++....+||.+|++ |+..++-.-.. +.
T Consensus 7 ~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~-d~~im~v~g~lEydp~~~~~ 85 (458)
T KOG2175|consen 7 QRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFD-DECIMDVIGCLEYDPAVPQS 85 (458)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhc-cccccccccccccCccCCCh
Confidence 34555556666666555556666666655544444444444334445566677777766 65554432111 10
Q ss_pred C-c-chH--HHHHHHHhccCChhHHHHHHHHHHHhc--CC---C--CCCch-----------hhhHHHHHHHHhh--HHH
Q 002889 404 G-I-PLL--GLLVKGMITDFGEDMHCQFLEILRSLL--DS---Y--TLSGA-----------QRDTIIEIFYEKH--LGQ 459 (870)
Q Consensus 404 ~-~-~Ll--~~Li~~ll~d~d~glk~Ql~eaLk~LL--Dp---~--~m~~~-----------e~d~FL~~FY~~~--~~~ 459 (870)
. + ..+ ....+..+...+|++..++-+..|+.. |. + ....+ .+..+++++++.. +..
T Consensus 86 k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l~e 165 (458)
T KOG2175|consen 86 KKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFLIE 165 (458)
T ss_pred hhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHHHH
Confidence 0 1 111 224555566789999999998777643 42 1 11111 3456777777764 333
Q ss_pred HHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhH---HHHHHH-hhhccchhhHH
Q 002889 460 LIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNV---VDKVLL-LTRRREKYLVV 535 (870)
Q Consensus 460 L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nl---l~rVl~-Ll~~~~K~L~L 535 (870)
||+-+... . ...++-..+.|+|+..|.+.+.|.+..+..+...-+ +-.++. .++..++-++.
T Consensus 166 Lf~~l~~~----~----------t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~ 231 (458)
T KOG2175|consen 166 LFARLRSE----S----------TDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRS 231 (458)
T ss_pred HHHHhcCC----c----------hHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhH
Confidence 33333221 1 012455678999999999999999988765333322 222222 24555888888
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHHhHhhccccc
Q 002889 536 AAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFE 614 (870)
Q Consensus 536 aAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~eNik~Li~hlVe~y~~~l~~i~ 614 (870)
+|.+.+.+++-.+=- ..|-.+...-+.|- .+..--|+++|+.++.||+-+.+..+.+..+.--.+.+.+....
T Consensus 232 ~~~di~~~~ve~~~~-~i~~~~~~~~~~~~-----~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~ 304 (458)
T KOG2175|consen 232 AATDILARLVEMSPS-MIRSFTLGEALDPD-----DEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA 304 (458)
T ss_pred HHHHHHHHHHhcCHH-HHHHHHHHhhcCch-----hhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc
Confidence 998888888854322 22222222223331 23344689999999999999998888888888888888887765
No 11
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=94.88 E-value=0.17 Score=47.93 Aligned_cols=95 Identities=14% Similarity=0.255 Sum_probs=74.2
Q ss_pred CCCCeeEEEEeCCCCCceeccce-EEEEEEeCCCcceeEEEEecCCC-cceeEeecCCCCccccccCeEEEecCCCcccc
Q 002889 12 NPMQRVKVYRLNDDGKWDDQGTG-HVTVDSMERSEELCLFVIDEEDN-ETILLHRISPDDIYRKQEDTIISWRDPEYSTE 89 (870)
Q Consensus 12 ~~~~RVKVY~L~~~~~W~D~GTG-~~s~~~~e~~~~~~L~V~sE~d~-~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 89 (870)
..+--|-+|.=.. +.|.-.|+| -+............+-|.+...+ ..+++..|.++-.|.+.-.+.-+|.+.+ .=
T Consensus 8 ~~~avV~~y~~~~-~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~Fh~f~~~~--~~ 84 (106)
T smart00461 8 LARAVVQLYDADT-KKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTFHQWADDK--CV 84 (106)
T ss_pred EEEEEEEEEeCCC-CCeEECCCCCEEEEEEEecCCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCceEEEEeCC--eE
Confidence 3455678888764 569999999 55544433334566667777666 7889999999999999999999999854 66
Q ss_pred ccccccCccchhHHHHHHHH
Q 002889 90 LALSFQEPTGCSYIWDNICN 109 (870)
Q Consensus 90 lALSFQe~~GC~~IW~~I~~ 109 (870)
+.|+|++.+.+....+.+++
T Consensus 85 ~GLnF~se~EA~~F~~~v~~ 104 (106)
T smart00461 85 YGLNFASEEEAKKFRKKVLK 104 (106)
T ss_pred EEeecCCHHHHHHHHHHHHh
Confidence 99999999999988777764
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.41 E-value=1.2 Score=51.79 Aligned_cols=231 Identities=13% Similarity=0.158 Sum_probs=131.4
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh-cCCCC
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL-LDSYT 439 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L-LDp~~ 439 (870)
+++.+...|.++++.||..|+--+..+...+|+.++.. ++..|.+ ++.|.++++......++..+ -.+..
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--------~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--------LIPKLKQ-LLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--------HHHHHHH-HTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHhh-hccCCcchhHHHHHHHHHHHccCcch
Confidence 46778888999999999999999999999999988752 3444444 45899999988888887777 21111
Q ss_pred CCchhhhHHHHHHHHhh-------HHHHHHHHHhcCCCcccccccCCCCcccCCc---HHHHHHH------------HHH
Q 002889 440 LSGAQRDTIIEIFYEKH-------LGQLIDVITASCPQEGIAQSASSGGRVESTK---PEILSNI------------CEL 497 (870)
Q Consensus 440 m~~~e~d~FL~~FY~~~-------~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~---~~ll~~l------------~EL 497 (870)
. . .++..+|... .+|+...++..... .. ...... ..++..+ .|.
T Consensus 186 ~----~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~-~~--------~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 186 Y----K-SLIPKLIRILCQLLSDPDPWLQIKILRLLRR-YA--------PMEPEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp H----T-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTT-ST--------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h----h-hhHHHHHHHhhhcccccchHHHHHHHHHHHh-cc--------cCChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 0 0 3455555442 12322222221000 00 000001 1122222 222
Q ss_pred HHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCc
Q 002889 498 LCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYN 577 (870)
Q Consensus 498 L~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~N 577 (870)
...+..-.+. .-+...++..+.+++.+++.-++..|++.+..++... ...++.+-+..|.-..+.+.
T Consensus 252 ~~~i~~l~~~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---------~~~v~~~~~~~~~l~~~~d~ 318 (526)
T PF01602_consen 252 IRLIIKLSPS----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---------PPAVFNQSLILFFLLYDDDP 318 (526)
T ss_dssp HHHHHHHSSS----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---------HHHHGTHHHHHHHHHCSSSH
T ss_pred HHHHHHhhcc----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---------chhhhhhhhhhheecCCCCh
Confidence 2222211111 1144556677777888888888888888888887664 12233444444443445556
Q ss_pred chHHHHHHHHHHHH-hhChHHHHHHHHHHhHhh---cccccchhhHHHHHHhhh
Q 002889 578 LLNSAVLELFEYIR-KENLKSLVKYIVDSFWNQ---LVNFEYLASLHSFKVKYE 627 (870)
Q Consensus 578 LLnSA~LELfefIr-~eNik~Li~hlVe~y~~~---l~~i~yv~tF~~L~~rYe 627 (870)
-+-...|+++-.+- .+|++.++..|.+--.+. =-....+.+...+..+|.
T Consensus 319 ~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 319 SIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 67777777666554 579999998888544221 112244556666777774
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.79 E-value=16 Score=43.75 Aligned_cols=241 Identities=15% Similarity=0.170 Sum_probs=142.5
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
|..|...+..+.. ..-.|.+.--|..+|.-. + |+.-.. .-..+|++|...+.+.|..+..-++=.|.++.+
T Consensus 196 l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk-~--P~P~~~-----~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK-LSMLRNATWTLSNLCRGK-N--PSPPFD-----VVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred hHHHHHHhccccc-hHHHHHHHHHHHHHHcCC-C--CCCcHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4445555543332 234555555555555422 2 211111 113578999999999999999988889999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 469 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p 469 (870)
+.+..++-.+ .-. ..-.|+++|-.... +.+ .-|||++-.- ..+. |..-+.--+..+-.-+.+|+...+
T Consensus 267 g~ne~iq~vi-~~g---vv~~LV~lL~~~~~---~v~-~PaLRaiGNI--vtG~--d~QTq~vi~~~~L~~l~~ll~~s~ 334 (514)
T KOG0166|consen 267 GSNEKIQMVI-DAG---VVPRLVDLLGHSSP---KVV-TPALRAIGNI--VTGS--DEQTQVVINSGALPVLSNLLSSSP 334 (514)
T ss_pred CChHHHHHHH-Hcc---chHHHHHHHcCCCc---ccc-cHHHhhccce--eecc--HHHHHHHHhcChHHHHHHHhccCc
Confidence 9998776433 211 22344555533221 111 3455555221 1111 111111111111111233333212
Q ss_pred CcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCch
Q 002889 470 QEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (870)
Q Consensus 470 ~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkD 549 (870)
.+.+ + .-.|=.++-.+. +.-.-...|+.-+++..++.+|...+.-++--|.--+.++..-.+
T Consensus 335 ~~~i-------------k----kEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 335 KESI-------------K----KEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred chhH-------------H----HHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 1110 0 112333333333 333334568888999999999999998899899999999988888
Q ss_pred hHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002889 550 EHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (870)
Q Consensus 550 efy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~ 592 (870)
.--.+||++.++++|+.++|..--. =+=++||+=++.|.+
T Consensus 397 ~~qi~yLv~~giI~plcdlL~~~D~---~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 397 PEQIKYLVEQGIIKPLCDLLTCPDV---KIILVALDGLENILK 436 (514)
T ss_pred HHHHHHHHHcCCchhhhhcccCCCh---HHHHHHHHHHHHHHH
Confidence 9999999999999999999943322 237899999999976
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.75 E-value=8.3 Score=44.97 Aligned_cols=225 Identities=17% Similarity=0.229 Sum_probs=113.3
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
++.+...+.+++. .-|+.++.-+..++.... .++..++++.+...|.+.|+.++.+|+-.+..+ .
T Consensus 116 ~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p------------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 116 IPDVIKLLSDPSP--YVRKKAALALLKIYRKDP------------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp HHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCH------------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhcCCch--HHHHHHHHHHHHHhccCH------------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 4445555555543 667777777766665532 333333678899999999999999998888777 6
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhh--hHHHHHHHHh----hHHHHHH-
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQR--DTIIEIFYEK----HLGQLID- 462 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~--d~FL~~FY~~----~~~~L~~- 462 (870)
++|...-..+ ..++..|.+. +...++=++..++.+|+.+.-.+ .... ..+++..... ....++.
T Consensus 181 ~~~~~~~~~~-----~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 181 CNDDSYKSLI-----PKLIRILCQL-LSDPDPWLQIKILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp CTHHHHTTHH-----HHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhH-----HHHHHHhhhc-ccccchHHHHHHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 5655311110 0122233322 25667766766666666553221 1111 2222222211 1111111
Q ss_pred --HHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHH
Q 002889 463 --VITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRF 540 (870)
Q Consensus 463 --pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF 540 (870)
-+... .....++..++..|.-++.+...-+|+..+ ..+..+.......+.-..+++
T Consensus 252 ~~~i~~l-----------------~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L-----~~L~~l~~~~~~~v~~~~~~~ 309 (526)
T PF01602_consen 252 IRLIIKL-----------------SPSPELLQKAINPLIKLLSSSDPNVRYIAL-----DSLSQLAQSNPPAVFNQSLIL 309 (526)
T ss_dssp HHHHHHH-----------------SSSHHHHHHHHHHHHHHHTSSSHHHHHHHH-----HHHHHHCCHCHHHHGTHHHHH
T ss_pred HHHHHHh-----------------hcchHHHHhhHHHHHHHhhcccchhehhHH-----HHHHHhhcccchhhhhhhhhh
Confidence 11110 012235566777777777755555676544 233344333323333233333
Q ss_pred HHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002889 541 VRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (870)
Q Consensus 541 lR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr 591 (870)
+ ++...|+.+.|... ++++..-.+..|.-. -+-||.+|++
T Consensus 310 ~--~l~~~~d~~Ir~~~--------l~lL~~l~~~~n~~~-Il~eL~~~l~ 349 (526)
T PF01602_consen 310 F--FLLYDDDPSIRKKA--------LDLLYKLANESNVKE-ILDELLKYLS 349 (526)
T ss_dssp H--HHHCSSSHHHHHHH--------HHHHHHH--HHHHHH-HHHHHHHHHH
T ss_pred h--eecCCCChhHHHHH--------HHHHhhcccccchhh-HHHHHHHHHH
Confidence 2 44445555544332 444444455555433 6778888884
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.54 E-value=31 Score=41.17 Aligned_cols=169 Identities=16% Similarity=0.217 Sum_probs=93.5
Q ss_pred HHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhc-cCChhH-HHHHH
Q 002889 351 RLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDM-HCQFL 428 (870)
Q Consensus 351 ~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~gl-k~Ql~ 428 (870)
..+...++.|+|+.+-..|.++|.-++..+.|+|..+.. .|.. .+|+.++. ++..|++.+.. +.|+.+ ..-+.
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g-~~yL~~~g---i~~~L~~~l~~~~~dp~~~~~~l~ 267 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG-LQYLEQQG---IFDKLSNLLQDSEEDPRLSSLLLP 267 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCC---HHHHHHHHHhccccCCcccchhhh
Confidence 456778889999999999999999999999999999999 5543 67887754 55555555544 233311 11122
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccch
Q 002889 429 EILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR 508 (870)
Q Consensus 429 eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yr 508 (870)
..++.. .+|....-..++. =|...++.|+.-+-. ..+....-.+|-|.+.. ++-.
T Consensus 268 g~~~f~---g~la~~~~~~v~~-~~p~~~~~l~~~~~s-------------------~d~~~~~~A~dtlg~ig--st~~ 322 (503)
T PF10508_consen 268 GRMKFF---GNLARVSPQEVLE-LYPAFLERLFSMLES-------------------QDPTIREVAFDTLGQIG--STVE 322 (503)
T ss_pred hHHHHH---HHHHhcChHHHHH-HHHHHHHHHHHHhCC-------------------CChhHHHHHHHHHHHHh--CCHH
Confidence 222211 0000000111221 223333444422211 12223334455555443 3334
Q ss_pred hhhHHhhh------hHHHHHHHhhhccchhhHHHHHHHHHHHhcCch
Q 002889 509 IKCNFLLN------NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (870)
Q Consensus 509 iK~~il~~------nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkD 549 (870)
-|..++.+ +++.++....++...-+++.|+..+-.++....
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 45555222 245555555666666789999999999976543
No 16
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.38 E-value=12 Score=41.64 Aligned_cols=252 Identities=17% Similarity=0.295 Sum_probs=123.8
Q ss_pred ccccchhhHHhHHHHHHHhHHHHHHHhhCCHH----HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHH
Q 002889 277 ARVLDEATVANLNSIIHGNNAYVVSLLKDDST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRL 352 (870)
Q Consensus 277 pRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~----FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~l 352 (870)
++.+++..++.+..+=-.....=.+.+..+.. .+-.|+... +...+-.+-++.++-++|.-.. .+..+
T Consensus 23 a~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~-----~~~~~ 94 (312)
T PF03224_consen 23 AGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDP-----SRVEL 94 (312)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SS-----SSHHH
T ss_pred hCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCH-----HHHHH
Confidence 45677777776666544433332234444432 122344433 2344556666667777766543 45556
Q ss_pred HHHHHhcC---cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHH
Q 002889 353 FRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLE 429 (870)
Q Consensus 353 f~~Lv~~G---L~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~e 429 (870)
|..+.... .+..+-..+.++|..+...+.=+|..++.+++..-.... ++.=..+++.|.. .+...+.+++.-...
T Consensus 95 ~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~-~l~~~~~~~~~~av~ 172 (312)
T PF03224_consen 95 FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSS-QLSSSDSELQYIAVQ 172 (312)
T ss_dssp HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH--TT-HHHH---HHHHH
T ss_pred HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHH-hhcCCCcchHHHHHH
Confidence 66665422 455444488899999999999999999999887544311 0000234455544 223344555555556
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccch
Q 002889 430 ILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR 508 (870)
Q Consensus 430 aLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yr 508 (870)
+|..||-.+ .|=..|.+ +.+..|+.-|... .. . .+....+++.++ +||+-.=+|-
T Consensus 173 ~L~~LL~~~--------~~R~~f~~~~~v~~l~~iL~~~-~~-----~------~~~~~~Ql~Y~~----ll~lWlLSF~ 228 (312)
T PF03224_consen 173 CLQNLLRSK--------EYRQVFWKSNGVSPLFDILRKQ-AT-----N------SNSSGIQLQYQA----LLCLWLLSFE 228 (312)
T ss_dssp HHHHHHTSH--------HHHHHHHTHHHHHHHHHHHH---------------------HHHHHHHH----HHHHHHHTTS
T ss_pred HHHHHhCcc--------hhHHHHHhcCcHHHHHHHHHhh-cc-----c------CCCCchhHHHHH----HHHHHHHhcC
Confidence 777776322 23334443 4455555533210 00 0 012234544332 3333333332
Q ss_pred --hhhHHhhhhHHHHHHHhhh--ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChH
Q 002889 509 --IKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLK 563 (870)
Q Consensus 509 --iK~~il~~nll~rVl~Ll~--~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~ 563 (870)
+-..+..++++..++.+++ .|+|..++ |+-.+|+|+....+.+..-|+.++++.
T Consensus 229 ~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv-~la~l~Nl~~~~~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 229 PEIAEELNKKYLIPLLADILKDSIKEKVVRV-SLAILRNLLSKAPKSNIELMVLCGLLK 286 (312)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH--SHHHHHH-HHHHHHHTTSSSSTTHHHHHHHH-HHH
T ss_pred HHHHHHHhccchHHHHHHHHHhcccchHHHH-HHHHHHHHHhccHHHHHHHHHHccHHH
Confidence 2234455557777776654 68999997 478899999887777666777666654
No 17
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=90.76 E-value=2 Score=41.46 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=66.5
Q ss_pred eeEEEEeCC-CCCceeccce-----EEEEEEeCCCcceeEEEEec-CCCcceeEeecCCCCccccccCeEEEecCCCccc
Q 002889 16 RVKVYRLND-DGKWDDQGTG-----HVTVDSMERSEELCLFVIDE-EDNETILLHRISPDDIYRKQEDTIISWRDPEYST 88 (870)
Q Consensus 16 RVKVY~L~~-~~~W~D~GTG-----~~s~~~~e~~~~~~L~V~sE-~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 88 (870)
|..|..-++ .+.|.--|.| .|++-+. ...+.+.+|--. .++..+++..|.++-.|.+.--+...|.+.+ +
T Consensus 8 rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~-~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~--~ 84 (111)
T cd01207 8 RASVMVYDDSNKKWVPAGGGSQGFSRVQIYHH-PRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDAR--Q 84 (111)
T ss_pred EEEeeEEcCCCCcEEcCCCCCCCcceEEEEEc-CCCCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceeeecCC--e
Confidence 555555544 5679998884 3544333 333444444332 4678899999999999999999999999986 6
Q ss_pred cccccccCccchhHHHHHHHHH
Q 002889 89 ELALSFQEPTGCSYIWDNICNV 110 (870)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~V 110 (870)
-..|+|+..+.+...=+.|.+.
T Consensus 85 v~GLnF~Se~eA~~F~~~v~~A 106 (111)
T cd01207 85 VYGLNFGSKEDATMFASAMLSA 106 (111)
T ss_pred EEeeccCCHHHHHHHHHHHHHH
Confidence 7899999999998765555443
No 18
>PTZ00429 beta-adaptin; Provisional
Probab=90.26 E-value=60 Score=40.88 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=95.1
Q ss_pred hHhHHHHHHHHHhcCc-------HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002889 346 MVQQLRLFRDLMNEGI-------FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (870)
Q Consensus 346 ~~~R~~lf~~Lv~~GL-------~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d 418 (870)
+.-|.--.++|..-.. ...|..+|.+.++-||.+|.=-+.-+...+|.++.. ..++..|.+ |+.|
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~-------~~~~~~L~~-LL~D 190 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ-------QDFKKDLVE-LLND 190 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc-------cchHHHHHH-HhcC
Confidence 3445555566655443 334456677888888888777777777888876532 235566666 6789
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHH
Q 002889 419 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 498 (870)
Q Consensus 419 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL 498 (870)
.|+++....+-+|..+.... +.+ +... .+++.+|+.-|-+ ...+....|+++|
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~----~~~---l~l~-~~~~~~Ll~~L~e-------------------~~EW~Qi~IL~lL 243 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYG----SEK---IESS-NEWVNRLVYHLPE-------------------CNEWGQLYILELL 243 (746)
T ss_pred CCccHHHHHHHHHHHHHHhC----chh---hHHH-HHHHHHHHHHhhc-------------------CChHHHHHHHHHH
Confidence 99999877766666664211 111 1111 2222333333311 1245556888888
Q ss_pred HHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 499 CFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 499 ~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
+-......- -..+++.++...++...--++++|+|++=.+.
T Consensus 244 ~~y~P~~~~------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AAQRPSDKE------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HhcCCCCcH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 664432211 12467788888787777888888888766554
No 19
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.95 E-value=43 Score=38.77 Aligned_cols=242 Identities=19% Similarity=0.264 Sum_probs=135.7
Q ss_pred cchhhHHhHHHHHHHhHHHHHHHhhCC--HHHHHHHHHHhC----------C-CCCcHHhHHHHHHHHHHHHHhhhccCh
Q 002889 280 LDEATVANLNSIIHGNNAYVVSLLKDD--STFIQELFARLR----------S-PTTLEESKKNLVHFLHEFCGLSKSLQM 346 (870)
Q Consensus 280 LDD~t~s~LnSlIffNqveIV~~Lq~d--~~FL~eLF~~l~----------~-~~~~~e~rrdlV~FL~E~c~lsK~LQ~ 346 (870)
.|+..+..+..++.+ ||.+|-.+ ..++.+++..|- + .......++-++.|-.-+|++-|+...
T Consensus 109 ~~~~~L~~~~~l~~~----iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~ 184 (415)
T PF12460_consen 109 LDDRVLELLSRLINL----IVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL 184 (415)
T ss_pred cchHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc
Confidence 567777777776655 66665432 457888888775 1 111224566777888888888888775
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc--ChHHHHHHHH------------------------
Q 002889 347 VQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ--DPNLLRSYVV------------------------ 400 (870)
Q Consensus 347 ~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iieh--dP~lvR~~i~------------------------ 400 (870)
++-..+.+.+ ++.++...+...|..+.-++..+++- +.+.+..++-
T Consensus 185 ~~~~~ll~~l--------~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 185 PDLEELLQSL--------LNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIW 256 (415)
T ss_pred cCHHHHHHHH--------HHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHH
Confidence 5333343333 45666677777777777777777776 2222222211
Q ss_pred -------hc--CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC-CCCCch-----hhhHHHHHHHHhhHHHHHHHHH
Q 002889 401 -------RQ--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-YTLSGA-----QRDTIIEIFYEKHLGQLIDVIT 465 (870)
Q Consensus 401 -------~q--e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp-~~m~~~-----e~d~FL~~FY~~~~~~L~~pL~ 465 (870)
|. .+..+++.|++.+ . ++.+...+..++.+|+.. +..... -|--|=+-||...++.|++..-
T Consensus 257 i~KaLv~R~~~~~~~~~~~L~~lL-~--~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 257 ITKALVMRGHPLATELLDKLLELL-S--SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHh-C--ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 11 1123344444433 2 244455667777777765 332221 2333445566666777766554
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
.... ..+. +.+--|++.+++=|.-+ .-=--..++.=+++-+...+.-++.+++..+..++
T Consensus 334 ~~~~---------------~~k~----~yL~ALs~ll~~vP~~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 334 EADD---------------EIKS----NYLTALSHLLKNVPKSV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred hcCh---------------hhHH----HHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3210 0111 22335566666555322 00011235555566677788889999999999999
Q ss_pred cCchhHHHHHH
Q 002889 546 SRHDEHLINHF 556 (870)
Q Consensus 546 ~lkDefy~ryi 556 (870)
.-+.+....|+
T Consensus 394 ~~~~~~i~~hl 404 (415)
T PF12460_consen 394 EEAPELISEHL 404 (415)
T ss_pred HcCHHHHHHHH
Confidence 88766665554
No 20
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=89.73 E-value=51 Score=39.29 Aligned_cols=282 Identities=17% Similarity=0.251 Sum_probs=160.8
Q ss_pred HHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 002889 290 SIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 369 (870)
Q Consensus 290 SlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L 369 (870)
+++.-+..+++++|+..+.|+..++.-+..+.. +-||-.+.++=+ +..+.....-|.+.+|++-+-..|
T Consensus 3 ~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~I--------mDlLLklIs~d~---~~~~~~ilewL~~q~LI~~Li~~L 71 (475)
T PF04499_consen 3 CLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAI--------MDLLLKLISTDK---PESPTGILEWLAEQNLIPRLIDLL 71 (475)
T ss_pred hhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHH--------HHHHHHHHccCc---ccchHHHHHHHHHhCHHHHHHHHh
Confidence 345567779999999999999999999886553 556666666444 556777788888899998888888
Q ss_pred c-CCCcchhhhhhHHHHHHHhcChH-------------HHHHHHHhcCCcchHHHHHHHHhcc-CChhHHHHHHHHHHHh
Q 002889 370 Q-SQDKKLVLTGTDILILFLNQDPN-------------LLRSYVVRQEGIPLLGLLVKGMITD-FGEDMHCQFLEILRSL 434 (870)
Q Consensus 370 ~-~~d~~ir~~atDILv~iiehdP~-------------lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~glk~Ql~eaLk~L 434 (870)
. ..+..+...|+|+|..||....+ ++|+ +. ....+..|++.|+.+ .+.++ .....++-.|
T Consensus 72 ~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~-L~---S~~~v~~Ll~~mL~~~~~s~l-vn~v~IlieL 146 (475)
T PF04499_consen 72 SPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ-LV---SEETVEKLLDIMLNSQGGSSL-VNGVSILIEL 146 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH-Hh---ChHHHHHHHHHHhcCCCcchH-HHHHHHHHHH
Confidence 6 34456778899999888775432 2232 22 234667788888863 33332 3333344444
Q ss_pred cCCCC--------CC----c-hhhh-----HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHH
Q 002889 435 LDSYT--------LS----G-AQRD-----TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICE 496 (870)
Q Consensus 435 LDp~~--------m~----~-~e~d-----~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~E 496 (870)
|-..+ +. . .+++ ..|..|-+ +++.+.+-|... +....-.+..+......... =.+|||
T Consensus 147 IRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~-~l~~f~~lL~~~--~~~~~l~Tt~G~l~~PLG~~-RlkI~E 222 (475)
T PF04499_consen 147 IRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSP-RLPDFHKLLLNP--PKKPPLETTFGVLIPPLGFE-RLKICE 222 (475)
T ss_pred HHhcccccchhhccccccCCCCccchhhHHHHHHHHHH-hHHHHHHHHhch--hhccccccCCCCCCCCcchH-HHHHHH
Confidence 42111 00 0 1232 23333333 234455544432 11111111111001000001 136788
Q ss_pred HHHHHHhhccchh------hhHHhhhhHH-HHHHHhhhccchhhHHHHHHHHHHHhc-----------------------
Q 002889 497 LLCFCVLHHPYRI------KCNFLLNNVV-DKVLLLTRRREKYLVVAAVRFVRTILS----------------------- 546 (870)
Q Consensus 497 LL~FcV~~H~yri------K~~il~~nll-~rVl~Ll~~~~K~L~LaAlRFlR~iI~----------------------- 546 (870)
|++-...-...-. ...+...+.. .+... ++.+...-..
T Consensus 223 LiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (475)
T PF04499_consen 223 LIAELLHCSNMSLLNEPKGEEIVYERDGERERLLE------------QLQDALNDLEIDDEDIDDNSMDDESDSSEDSRE 290 (475)
T ss_pred HHHHHHhCCCccccCCccccchhcCcHHHHHHHHH------------HHHhhhhcccCCccccccccccccccCcccccc
Confidence 8777665544321 1112222211 11111 1111100000
Q ss_pred --------------------------------------Cch----hHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002889 547 --------------------------------------RHD----EHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (870)
Q Consensus 547 --------------------------------------lkD----efy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (870)
.++ +++..-|+..++|.-++++|..- +=.|.|...|-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfky-pwNNFLH~~V~ 369 (475)
T PF04499_consen 291 LEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKY-PWNNFLHNVVE 369 (475)
T ss_pred ccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcC-cchhHHHHHHH
Confidence 001 56888999999999999999876 66799999999
Q ss_pred HHHHHHH-----hhChHHHHHHHHH
Q 002889 585 ELFEYIR-----KENLKSLVKYIVD 604 (870)
Q Consensus 585 ELfefIr-----~eNik~Li~hlVe 604 (870)
+++-.|- ...-+.|+.||.+
T Consensus 370 diIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 370 DIIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred HHHHHHhCCCCcccccHHHHHHHHh
Confidence 9999998 4556789999984
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.31 E-value=8.7 Score=34.75 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=77.6
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002889 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (870)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii 388 (870)
.++.|...+.+++ ..-|..++.-|..+|.-+ ......+++.|.++.+-..|.++++.++..+.-.|..+.
T Consensus 8 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~--------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSD--ENVQREAAWALSNLSAGN--------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 3455555555544 466777887777666542 223345567899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002889 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (870)
Q Consensus 389 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (870)
...|.. +..+.+. -++..|++.|- +.+..++.+...+|..|
T Consensus 78 ~~~~~~-~~~~~~~---g~l~~l~~~l~-~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 78 AGPEDN-KLIVLEA---GGVPKLVNLLD-SSNEDIQKNATGALSNL 118 (120)
T ss_pred cCcHHH-HHHHHHC---CChHHHHHHHh-cCCHHHHHHHHHHHHHh
Confidence 887753 3333332 26667777654 45778888888887766
No 22
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=85.45 E-value=11 Score=43.39 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=96.3
Q ss_pred HHHHHhhCCHHHHHHHHHH---------hCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 002889 298 YVVSLLKDDSTFIQELFAR---------LRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 368 (870)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~---------l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~ 368 (870)
-|+.++-.|..++..+... +.-++.....|-++++|++.|+.+-+..+. +..|+...|--+
T Consensus 47 RilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~----------~~~~vvralvai 116 (371)
T PF14664_consen 47 RILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE----------IPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc----------CCHHHHHHHHHH
Confidence 3555677777777766651 112333467899999999999998543321 255677777777
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHH
Q 002889 369 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTI 448 (870)
Q Consensus 369 L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~F 448 (870)
..+++...|..+.++|.-+.=.||.++-. -.| +..|++.++. ....+...++.++-.|||.... ..|
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~----~gG---~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~t-----R~y 183 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAE----CGG---IRVLLRALID-GSFSISESLLDTLLYLLDSPRT-----RKY 183 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHH----cCC---HHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcch-----hhh
Confidence 77789999999999999999999998643 223 2344444443 2233777788888888886532 122
Q ss_pred HHHHHHhhHHHHHHHHHhc
Q 002889 449 IEIFYEKHLGQLIDVITAS 467 (870)
Q Consensus 449 L~~FY~~~~~~L~~pL~~~ 467 (870)
+..- .-+..|++|+.+.
T Consensus 184 l~~~--~dL~~l~apftd~ 200 (371)
T PF14664_consen 184 LRPG--FDLESLLAPFTDF 200 (371)
T ss_pred hcCC--ccHHHHHHhhhhh
Confidence 2221 2367888888763
No 23
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=82.21 E-value=6.1 Score=38.56 Aligned_cols=90 Identities=18% Similarity=0.345 Sum_probs=61.5
Q ss_pred eeEEEEeC-CCCCceeccc---eEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccc
Q 002889 16 RVKVYRLN-DDGKWDDQGT---GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELA 91 (870)
Q Consensus 16 RVKVY~L~-~~~~W~D~GT---G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlA 91 (870)
-|=||..+ ..++|...|. -|+.. -......+++|.+-.+.+.+.+ .|.++..++-|++- |.|+... +.-++
T Consensus 28 ~v~vY~f~~~~~~W~K~~iEG~LFv~~--r~~~p~~~~~vlNR~~~~n~~~-~i~~~~~~e~~~~~-l~~r~~~-~~I~G 102 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTDIEGTLFVYK--RSSSPRYGLIVLNRRSTENFVE-PITPDLDFELQDPY-LIYRNDN-QEIYG 102 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEE--EETTS-ECEEEEESSSS--EEE-EE-SGGGEEEETTE-EEEEETT-TEEEE
T ss_pred eEEEEeecCCCCcEeecCcEeeEEEEE--eecccceEEEEecCCCCCceee-ecCCCcEEEEeCCE-EEEEcCC-ceEEE
Confidence 47899986 4689998764 33321 1223446788887777665554 48888899977665 5566554 57899
Q ss_pred ccccCccchhHHHHHHHHH
Q 002889 92 LSFQEPTGCSYIWDNICNV 110 (870)
Q Consensus 92 LSFQe~~GC~~IW~~I~~V 110 (870)
+-|-+.+-|..|.+.+..+
T Consensus 103 iWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 103 IWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred EEEEeHHHHHHHHHHHHhc
Confidence 9999999999998887654
No 24
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=81.33 E-value=55 Score=39.84 Aligned_cols=144 Identities=21% Similarity=0.267 Sum_probs=76.7
Q ss_pred cccchhhHHhHHHHHHHhHHH-HHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHH--HHHHHHhh-hccChHhHHHHH
Q 002889 278 RVLDEATVANLNSIIHGNNAY-VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHF--LHEFCGLS-KSLQMVQQLRLF 353 (870)
Q Consensus 278 RiLDD~t~s~LnSlIffNqve-IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~F--L~E~c~ls-K~LQ~~~R~~lf 353 (870)
+.|-.+. ++=|++.+---+- ++..|.+|+.|+..+-.-|.+-- ..|.|.|.+ -+-+|++| +|..++ |+
T Consensus 230 ~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wl---s~k~emV~lE~Ar~v~~~~~~nv~~~----~~ 301 (898)
T COG5240 230 EHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWL---SDKFEMVFLEAARAVCALSEENVGSQ----FV 301 (898)
T ss_pred HHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHh---cCcchhhhHHHHHHHHHHHHhccCHH----HH
Confidence 3333443 4445555444443 45567778876655443222110 011222211 23455554 343322 22
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHH------HHhcC---------------C----c-ch
Q 002889 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSY------VVRQE---------------G----I-PL 407 (870)
Q Consensus 354 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~------i~~qe---------------~----~-~L 407 (870)
.. ...+++..|+++....|.+|.-||.-+..-.|..|... ++..+ | . .|
T Consensus 302 ~~-----~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrL 376 (898)
T COG5240 302 DQ-----TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRL 376 (898)
T ss_pred HH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHH
Confidence 22 23567778888888888888888888777777654321 11111 1 0 12
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 408 LGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 408 l~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
++ +|-.|+.|-+.|.|.-+.+|+|.|-
T Consensus 377 v~-~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 377 VN-LIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred HH-HHHHHHHhhccCceEEeHHHHHHHH
Confidence 22 3444566777888888888998884
No 25
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=80.02 E-value=16 Score=35.03 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=74.3
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccccc
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALS 93 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALS 93 (870)
.=|.||.-.. .+.|.-..+|-+............|-+.+-..+..+.+..|-.+=.|+++.....++.-. ..-++|+
T Consensus 10 aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY~~f~y~~~r~fFhtFe~d--~c~~GL~ 87 (105)
T cd01205 10 AVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELYDNFEYQQPRPFFHTFEGD--DCVVGLN 87 (105)
T ss_pred EEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcccCcEEccCCCcEEEEecc--CcEEEEE
Confidence 3488999854 389999999999876543345678889998888899999999999999999999999865 3678999
Q ss_pred ccCccchhHHHHHH
Q 002889 94 FQEPTGCSYIWDNI 107 (870)
Q Consensus 94 FQe~~GC~~IW~~I 107 (870)
|=+..-+......+
T Consensus 88 Fade~EA~~F~k~v 101 (105)
T cd01205 88 FADETEAAEFRKKV 101 (105)
T ss_pred ECCHHHHHHHHHHH
Confidence 99888877766654
No 26
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=79.66 E-value=1.8e+02 Score=36.65 Aligned_cols=112 Identities=15% Similarity=0.323 Sum_probs=61.5
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH--hcChH-HHHHH-------HHhcCCcchHHHHHHHHhc-cCChhH
Q 002889 355 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL--NQDPN-LLRSY-------VVRQEGIPLLGLLVKGMIT-DFGEDM 423 (870)
Q Consensus 355 ~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii--ehdP~-lvR~~-------i~~qe~~~Ll~~Li~~ll~-d~d~gl 423 (870)
.+++.|++..|-.+|.+.+..+...++-.|--+- ..+-+ |...- ++..+...+.+.-++.|.+ .+|+++
T Consensus 285 kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 285 KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 4578899999999998888777666655553222 11111 11111 1111233456666666666 677777
Q ss_pred HHHHHH-----HHHHhcCCCCCC-----------chhhhHHHHHHHHhhHHHHHHHHHhc
Q 002889 424 HCQFLE-----ILRSLLDSYTLS-----------GAQRDTIIEIFYEKHLGQLIDVITAS 467 (870)
Q Consensus 424 k~Ql~e-----aLk~LLDp~~m~-----------~~e~d~FL~~FY~~~~~~L~~pL~~~ 467 (870)
+.++.. .|-.||...+.. ..++ .--.|=|..|++.|++-++..
T Consensus 365 R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhC
Confidence 777765 344455433210 0011 111234567888888887764
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.09 E-value=85 Score=32.63 Aligned_cols=186 Identities=14% Similarity=0.146 Sum_probs=100.5
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHH
Q 002889 318 RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRS 397 (870)
Q Consensus 318 ~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~ 397 (870)
+.++.+=+.|.+++.-|+.++.-. ........++..|- .++..|...+.+....+...|+..+..+..+-..-+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 445556678899999999888755 11122233433333 67777777888777888888888888877665554444
Q ss_pred HHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH-HHHHHhcCCCcccccc
Q 002889 398 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL-IDVITASCPQEGIAQS 476 (870)
Q Consensus 398 ~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L-~~pL~~~~p~e~~~~~ 476 (870)
++ ..++..|++.+ .+...-+.....++|..++..-++ ...+ +..+...+.
T Consensus 91 ~~-----~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~----------------~~~~~~~~l~~~~~------- 141 (228)
T PF12348_consen 91 YA-----DILLPPLLKKL-GDSKKFIREAANNALDAIIESCSY----------------SPKILLEILSQGLK------- 141 (228)
T ss_dssp HH-----HHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H------------------HHHHHHHHHHTT-------
T ss_pred HH-----HHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCc----------------HHHHHHHHHHHHHh-------
Confidence 32 12444444433 334455666667777777654321 1222 222222110
Q ss_pred cCCCCcccCCcHHHHHHHHHHHHHHHhhcc---chhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHH
Q 002889 477 ASSGGRVESTKPEILSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (870)
Q Consensus 477 ~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~---yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~i 544 (870)
...+.+=...+++|..++..|+ -.+........+..-+.+++.-.+.-++-+|-+.|..+
T Consensus 142 --------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 142 --------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp ---------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 1233444577889999999998 44444443466777788888888888888888888775
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=73.28 E-value=14 Score=33.34 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=55.0
Q ss_pred HhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002889 513 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (870)
Q Consensus 513 il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfef 589 (870)
+...+++..++.++...+..++..|++.+..+....+ -+..++++.+.+.++++++... ...+...|+-=|-.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 3456688889999998888999999999999765544 4666888899999999988652 335555555444333
No 29
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=71.85 E-value=23 Score=41.21 Aligned_cols=232 Identities=28% Similarity=0.398 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHh---hcChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCC----hhhHHHHHHH---HHHHHhcCChhh
Q 002889 139 LSTLPLILKTVT---ESGIADQMRLTELILNDQDFFRKLMDLFRICEDLEN----IDGLHMIFKI---IKGIILLNSPQI 208 (870)
Q Consensus 139 l~nL~eIl~~i~---~~s~~~rerla~~Il~~~~YI~KLl~LF~~cEdle~----~e~Lh~L~~I---vK~IilLNd~~I 208 (870)
+..|....+.+. .+..+++.-..++| |+.+|-||++||+. ||-.- ..-||++|-= -|..|..--+.|
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yi--d~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNNi 222 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYI--DQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINNI 222 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHh--hHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcch
Confidence 445665554442 33444544334444 68999999999964 33222 3456666551 122233333333
Q ss_pred Hhhh-hcc------hhHhHHhhhcccCCCCCCccchhHhhhhcCCceeeeecCChHHHHHHHhh--h-eeeee-eehhcc
Q 002889 209 FEKI-FGD------ELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQT--Y-RVGYL-KDVVLA 277 (870)
Q Consensus 209 iE~l-lsD------e~i~~VvG~LEYDPe~p~~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqt--Y-RLqYL-KDVVLp 277 (870)
|=.+ .+- .-+++++|+..-.=++|-+..|.-||.+ =+||+.-+-=..--||- | =+||+ ||-=|+
T Consensus 223 f~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~r-----vLipLhk~k~l~~yh~QLaYcivQfveKd~kl~ 297 (457)
T KOG2085|consen 223 FLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVR-----VLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLT 297 (457)
T ss_pred hhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHH-----hhhccccCCCccccccccceeeeeeeccCcccc
Confidence 3222 222 2367889999989999988899999963 23454322111111110 0 01222 221111
Q ss_pred cccchhhHHhHHHHHHHhHHHHHHHhh--------CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHH--HHhhhccChH
Q 002889 278 RVLDEATVANLNSIIHGNNAYVVSLLK--------DDSTFIQELFARLRSPTTLEESKKNLVHFLHEF--CGLSKSLQMV 347 (870)
Q Consensus 278 RiLDD~t~s~LnSlIffNqveIV~~Lq--------~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~--c~lsK~LQ~~ 347 (870)
|. -|-.+|+ ..-.||.||=.+|.--+.+.-.|-..=+| +|+ |--|-+.|..
T Consensus 298 ----~~--------------VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf-~qia~c~sS~HFQVA 358 (457)
T KOG2085|consen 298 ----ET--------------VIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLF-RQIARCVSSPHFQVA 358 (457)
T ss_pred ----HH--------------HHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHH-HHHHHHcCChhHHHH
Confidence 11 0222222 11247777766665444333333333333 332 3334566777
Q ss_pred hHHHHH------HHHHhcC---cHHHHHHHHc-----CCCcchhhhhhHHHHHHHhcChHHHHH
Q 002889 348 QQLRLF------RDLMNEG---IFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRS 397 (870)
Q Consensus 348 ~R~~lf------~~Lv~~G---L~~vi~~~L~-----~~d~~ir~~atDILv~iiehdP~lvR~ 397 (870)
.|.-+| .+|+... +++++-.+|- |=+..+......++-+++|.||.+.-.
T Consensus 359 EraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee 422 (457)
T KOG2085|consen 359 ERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE 422 (457)
T ss_pred HHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 787655 3455433 5566555553 335567777888888999999887544
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=70.32 E-value=4.7e+02 Score=37.06 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=148.9
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 002889 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (870)
Q Consensus 358 ~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 437 (870)
..|-++.|...|.+++..++..|+.+|..+....+..... ++..+..+. |+.. +...+..++.+..-+|-.|...
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a-vv~agaIpP---LV~L-Lss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES-LATDEIINP---CIKL-LTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH-HHHcCCHHH---HHHH-HhcCChHHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999988886444 555554333 2332 3456777888888888888752
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhh
Q 002889 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (870)
Q Consensus 438 ~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~n 517 (870)
+...++-.+.+ ..+++-|++.|... ...+-...++.|..++.+..- +.-+...+
T Consensus 682 --~~~~q~~~~v~---~GaV~pL~~LL~~~-------------------d~~v~e~Al~ALanLl~~~e~--~~ei~~~~ 735 (2102)
T PLN03200 682 --IKENRKVSYAA---EDAIKPLIKLAKSS-------------------SIEVAEQAVCALANLLSDPEV--AAEALAED 735 (2102)
T ss_pred --CCHHHHHHHHH---cCCHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHcCchH--HHHHHhcC
Confidence 21112221111 23456666655321 234556677888888887764 44566788
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcC--chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh---
Q 002889 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK--- 592 (870)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l--kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~--- 592 (870)
.+....++|++...-.+=.|.+-+-.+... -|+-+-.|+-.-+...|+++.|... +-+|..+|-.||-+.++-+
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEALALLARTKG 814 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHhhcc
Confidence 899999999988776777777766664433 2445678999999999999988654 5668888888998888865
Q ss_pred ----------------hChHHHHHHHH
Q 002889 593 ----------------ENLKSLVKYIV 603 (870)
Q Consensus 593 ----------------eNik~Li~hlV 603 (870)
+++.+|+.+|-
T Consensus 815 ~~~~~~~~~~~~~e~p~~l~~l~~~l~ 841 (2102)
T PLN03200 815 GANFSHPPWAVLAEVPSSLEPLVRCLA 841 (2102)
T ss_pred cCCCCCCchhhHHhccCchHHHHHHHH
Confidence 56777877773
No 31
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=70.23 E-value=1.8e+02 Score=32.85 Aligned_cols=219 Identities=14% Similarity=0.205 Sum_probs=121.2
Q ss_pred HHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC----CC
Q 002889 298 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS----QD 373 (870)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~----~d 373 (870)
.|+..|-++. ++.++.-|.+.. .....-++..|.+++.+.. ...-.++|+.+ +. =++++.-.+.. ..
T Consensus 48 ~l~~~iL~~~--~k~lyr~L~~~~--~~~~~~~LrLL~~iv~f~~---g~~a~~v~~~f-d~-~~~~l~kll~~~~~~~~ 118 (330)
T PF11707_consen 48 ELIRSILQNH--LKLLYRSLSSSK--PSLTNPALRLLTAIVSFDG---GALAREVLRSF-DF-SLKSLPKLLTPRKKEKE 118 (330)
T ss_pred HHHHHHHHHH--HHHHHHHhCcCc--HHHHHHHHHHHHHHHccCC---HHHHHHHHHhc-CC-chhhHHHHhcccccccc
Confidence 4555554332 777777776655 2334467778888776421 11122344444 11 12233333321 11
Q ss_pred ---------cchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH-hcCCCCCCch
Q 002889 374 ---------KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS-LLDSYTLSGA 443 (870)
Q Consensus 374 ---------~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~-LLDp~~m~~~ 443 (870)
+.+|...++.+++++.+-+..+|..++.+.+. +..+.+.|-. .+..+-.++.+.|+. +|......-.
T Consensus 119 ~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~ 195 (330)
T PF11707_consen 119 KDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRS 195 (330)
T ss_pred ccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChh
Confidence 28999999999999998887777777776443 8888888877 456677788888873 4444454333
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccc----------------
Q 002889 444 QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY---------------- 507 (870)
Q Consensus 444 e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~y---------------- 507 (870)
.| ..+|=+.++.+|.+ |+....+ .. ...-+++.-+++-.+|. ...|.-
T Consensus 196 ~K---~~~fn~~~L~~l~~-Ly~~~~~-------~~----~~~~~~~vh~fL~~lcT-~p~~Gv~f~d~~~~~~~~~~~~ 259 (330)
T PF11707_consen 196 TK---CKLFNEWTLSQLAS-LYSRDGE-------DE----KSSVADLVHEFLLALCT-DPKHGVCFPDNGWYPRESDSGV 259 (330)
T ss_pred hh---hhhcCHHHHHHHHH-HhcccCC-------cc----cchHHHHHHHHHHHHhc-CCCcccccCCCCcCcCcccccc
Confidence 33 44555667777777 5543111 00 01112222233333331 111111
Q ss_pred ----hhhhHHhhhhHHHHHHHhhhccch--hhHHHHHHHHHHHh
Q 002889 508 ----RIKCNFLLNNVVDKVLLLTRRREK--YLVVAAVRFVRTIL 545 (870)
Q Consensus 508 ----riK~~il~~nll~rVl~Ll~~~~K--~L~LaAlRFlR~iI 545 (870)
.-+.+=..|.++.++++.+++-+- +..| +++.+++|=
T Consensus 260 ~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~L-vl~Il~~~P 302 (330)
T PF11707_consen 260 PVTINNKSFKINNKLLLNLLKKLKPWEDDRQQEL-VLKILKACP 302 (330)
T ss_pred cccccCCCCCcccHHHHHHHHHCCCCccHHHHHH-HHHHHHHCh
Confidence 123344556788888888887653 3334 677777764
No 32
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=68.27 E-value=2.1e+02 Score=32.68 Aligned_cols=169 Identities=15% Similarity=0.235 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH----HHHHHHhc-CCcchHHHHHHH----------
Q 002889 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL----LRSYVVRQ-EGIPLLGLLVKG---------- 414 (870)
Q Consensus 350 ~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~l----vR~~i~~q-e~~~Ll~~Li~~---------- 414 (870)
.+++..+.++|++..+-..|..=+-..|-.++.|+..++-+.+.. ...|+.++ ++ ++..|+++
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~pe--il~~L~~gy~~~dial~~ 143 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPE--ILDILLRGYENPDIALNC 143 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--TH--HHHHHHHGGGSTTTHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHH--HHHHHHHHhcCccccchH
Confidence 578888888898888888888777777777777777777665432 34555554 21 11222221
Q ss_pred ----------------Hhc------------cCChhHHHHHHHHHHHhcCCCCCCchhh---hHHHHHHHHhhHHHHHHH
Q 002889 415 ----------------MIT------------DFGEDMHCQFLEILRSLLDSYTLSGAQR---DTIIEIFYEKHLGQLIDV 463 (870)
Q Consensus 415 ----------------ll~------------d~d~glk~Ql~eaLk~LLDp~~m~~~e~---d~FL~~FY~~~~~~L~~p 463 (870)
++. ..+-.+.+-.+..+|.||-. ++ .+||..-|+..+. .+.-
T Consensus 144 g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~------hk~~~a~fl~~n~d~ff~-~~~~ 216 (335)
T PF08569_consen 144 GDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR------HKKLVAEFLSNNYDRFFQ-KYNK 216 (335)
T ss_dssp HHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS------SHHHHHHHHHHTHHHHHH-HHHH
T ss_pred HHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHH-HHHH
Confidence 111 11222222222333333211 12 3566665655555 2333
Q ss_pred HHhcCCCcccccccCCCCcccC-CcHHHHHHHHHHHHHHHhhccchh-hhHHhhhhHHHHHHHhhhccchhhHHHHHHHH
Q 002889 464 ITASCPQEGIAQSASSGGRVES-TKPEILSNICELLCFCVLHHPYRI-KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV 541 (870)
Q Consensus 464 L~~~~p~e~~~~~~~~~~~~~~-~~~~ll~~l~ELL~FcV~~H~yri-K~~il~~nll~rVl~Ll~~~~K~L~LaAlRFl 541 (870)
|+.+ + +| ++.+-+-.|-||| ...|.|.+ ..||-+.+-+.-++.||+.+.|.++.-|...|
T Consensus 217 Ll~s--~-------------NYvtkrqslkLL~ell---ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 217 LLES--S-------------NYVTKRQSLKLLGELL---LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp HCT---S-------------SHHHHHHHHHHHHHHH---HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HccC--C-------------CeEeehhhHHHHHHHH---HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 3331 0 11 2333444444443 34555554 67787788899999999999999999998877
Q ss_pred HHHh
Q 002889 542 RTIL 545 (870)
Q Consensus 542 R~iI 545 (870)
|-.|
T Consensus 279 KvFV 282 (335)
T PF08569_consen 279 KVFV 282 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
No 33
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=68.23 E-value=31 Score=33.36 Aligned_cols=95 Identities=18% Similarity=0.305 Sum_probs=69.4
Q ss_pred CeeEEEEeCCC--CCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccc
Q 002889 15 QRVKVYRLNDD--GKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELAL 92 (870)
Q Consensus 15 ~RVKVY~L~~~--~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlAL 92 (870)
-|..|+..++. ..|.--|.|-+.+.+.-+...-..-|.+-++...|+.+.|.++-.|-+=-.+.=.|.|+..++=+.|
T Consensus 9 arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~~~~iINc~i~~~~~y~kas~~FhQWrD~R~~tVyGL 88 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGGTKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGL 88 (111)
T ss_pred eeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecCcEEEEeccccCCcceeecccccccccccccceeeec
Confidence 47777777763 3899999988877654333222222333445678899999999999999999999999986688999
Q ss_pred cccCccchhHHHHHHHH
Q 002889 93 SFQEPTGCSYIWDNICN 109 (870)
Q Consensus 93 SFQe~~GC~~IW~~I~~ 109 (870)
+|..+++-+..=+.+.+
T Consensus 89 nF~Sk~ea~~F~~~f~~ 105 (111)
T cd01206 89 GFSSEQQLTKFAEKFQE 105 (111)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99998876654333333
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=67.71 E-value=5.3e+02 Score=36.62 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=141.0
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002889 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (870)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ 386 (870)
..+++-|...|++.+ ..-|.+++.-|..++. . . ..-..++..|-++.|=.+|++.+...|..+.-+|-+
T Consensus 57 aGaIP~LV~lL~sg~--~~vk~nAaaaL~nLS~---~--e----~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~s 125 (2102)
T PLN03200 57 SQAMPLLVSLLRSGT--LGAKVNAAAVLGVLCK---E--E----DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYA 125 (2102)
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhc---C--H----HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677777776543 3455666655555432 2 1 222344568999999999999999999999999988
Q ss_pred HHhcCh-HHHHHHHHhcCCcchHHHHHHHHhc--cCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHH
Q 002889 387 FLNQDP-NLLRSYVVRQEGIPLLGLLVKGMIT--DFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLID 462 (870)
Q Consensus 387 iiehdP-~lvR~~i~~qe~~~Ll~~Li~~ll~--d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~ 462 (870)
+..++. ...|..++..+|. +..|++.+-. -.|..++....-+|+.|..... .+-...- ...++.|+.
T Consensus 126 LS~~~~~D~~~~~I~v~~Ga--Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e-------n~~~~IIeaGaVp~LV~ 196 (2102)
T PLN03200 126 VSSGGLSDHVGSKIFSTEGV--VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD-------GFWSATLEAGGVDILVK 196 (2102)
T ss_pred HHcCcchhhhhhhhhhhcCC--hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc-------chHHHHHHcCCHHHHHH
Confidence 887764 3345444433443 1122333221 1244566666778887764331 1222111 235676666
Q ss_pred HHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhcc-chhhHHHHHHHH
Q 002889 463 VITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFV 541 (870)
Q Consensus 463 pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~-~K~L~LaAlRFl 541 (870)
-|.+. .+.+..+.+.+|+-...+++ ..+.-++..+.+..++.|+++. +.-++-.|+-.+
T Consensus 197 LLsS~-------------------d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 197 LLSSG-------------------NSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred HHcCC-------------------CHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 55321 12333455665554444443 2577788899999999999864 457788888888
Q ss_pred HHHhcCchhHHHHHHHhcCChHHHHHHHHH
Q 002889 542 RTILSRHDEHLINHFVKNNLLKPIVDAFVA 571 (870)
Q Consensus 542 R~iI~lkDefy~ryiIk~nLf~PIl~~f~~ 571 (870)
+++.+ ++.-+.+.+++.|-..|+++++..
T Consensus 257 ~nLAs-~s~e~r~~Iv~aGgIp~LI~lL~s 285 (2102)
T PLN03200 257 EALSS-QSKEAKQAIADAGGIPALINATVA 285 (2102)
T ss_pred HHHhc-CCHHHHHHHHHCCCHHHHHHHHhC
Confidence 88776 455588999999999999998863
No 35
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.15 E-value=2.8e+02 Score=33.20 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchh------hhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc-CChh
Q 002889 350 LRLFRDLMNEGIFDIVTDALQSQDKKLV------LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD-FGED 422 (870)
Q Consensus 350 ~~lf~~Lv~~GL~~vi~~~L~~~d~~ir------~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~g 422 (870)
..|+.+|++.+++..+---+..=|.+++ ....-++..+++.+|+..-. +++| .|+.+|...+... .-.+
T Consensus 166 evLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~-~~e~---~ll~WLL~rl~~k~~f~a 241 (536)
T KOG2734|consen 166 EVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTE-IVEQ---GLLSWLLKRLKGKAAFDA 241 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHH-HHHh---hHHHHHHHHHhcccCcch
Confidence 3689999999999988777654444433 22234556688888885543 4444 5777777654332 3345
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHH
Q 002889 423 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 502 (870)
Q Consensus 423 lk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV 502 (870)
-+.-.+|+|-+||...+-.. .+-.-| ..++.|+.-|. .... .. + . +.-..++..++.+-||-|+
T Consensus 242 Nk~YasEiLaillq~s~e~~-~~~~~l-----~GiD~lL~~la----~yk~-~d--P-~--~~~E~EmmeNLFdcLCs~l 305 (536)
T KOG2734|consen 242 NKQYASEILAILLQNSDENR-KLLGPL-----DGIDVLLRQLA----VYKR-HD--P-A--TVDEEEMMENLFDCLCSLL 305 (536)
T ss_pred hHHHHHHHHHHHhccCchhh-hhhcCc-----ccHHHHHhhcc----hhhc-cC--C-C--CcCHHHHHHHHHHHHHHHh
Confidence 56667899999996654210 000000 11233333332 1111 00 0 0 1124567889999999998
Q ss_pred hhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCch-hHHHHHHHhcCChHHHHHHHHHh
Q 002889 503 LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAFVAN 572 (870)
Q Consensus 503 ~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkD-efy~ryiIk~nLf~PIl~~f~~n 572 (870)
++-.-|- .|..-+.+-...+.+ +- .|..+=+|+|++-.+..-.| .=+..-++.--=++.||-+|...
T Consensus 306 m~~~nr~-~Fl~~EGlqLm~Lml-r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~ 373 (536)
T KOG2734|consen 306 MAPANRE-RFLKGEGLQLMNLML-RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKT 373 (536)
T ss_pred cChhhhh-hhhccccHHHHHHHH-HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhC
Confidence 8776553 344444444444433 22 68889999999998876555 13334455666677888888743
No 36
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.53 E-value=3.3e+02 Score=34.66 Aligned_cols=125 Identities=14% Similarity=0.203 Sum_probs=72.3
Q ss_pred cCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 002889 359 EGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 438 (870)
Q Consensus 359 ~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 438 (870)
+.|.+-++..|++.++.||-.|+=-++-++--.|+++-.|+.. .+.+++|++.|+-.-....+-.++--
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~----------~~~lL~ek~hGVL~~~l~l~~e~c~~- 209 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA----------FRKLLCEKHHGVLIAGLHLITELCKI- 209 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH----------HHHHHhhcCCceeeeHHHHHHHHHhc-
Confidence 3466788899999999999999877788888899988766543 34466777877743222222222110
Q ss_pred CCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhcc
Q 002889 439 TLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHP 506 (870)
Q Consensus 439 ~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~-~~~~~ll~~l~ELL~FcV~~H~ 506 (870)
..+-++ .|+++++.||.-|-..+.... ++...+. ...|.+...|+.+|.-.-+.+.
T Consensus 210 ------~~~~l~-~fr~l~~~lV~iLk~l~~~~y-----speydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 210 ------SPDALS-YFRDLVPSLVKILKQLTNSGY-----SPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred ------CHHHHH-HHHHHHHHHHHHHHHHhcCCC-----CCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 012233 355588888888776421111 0111111 2344555555655555555554
No 37
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.71 E-value=4.3e+02 Score=34.43 Aligned_cols=63 Identities=22% Similarity=0.200 Sum_probs=48.2
Q ss_pred HHHcCCCcchhhhhhHHHHHHHh---cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 002889 367 DALQSQDKKLVLTGTDILILFLN---QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 438 (870)
Q Consensus 367 ~~L~~~d~~ir~~atDILv~iie---hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 438 (870)
..++++---+|.-||+++..+-+ .||+.+++ .+....+.|.++.+.-++.+.+-||+.++-..
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~---------ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSE---------ALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHH---------HHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 33456666689999999987764 45666665 45566788888999999999999999998554
No 38
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.88 E-value=32 Score=40.93 Aligned_cols=275 Identities=17% Similarity=0.217 Sum_probs=154.3
Q ss_pred HhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChH-----hHHHHHHHHHhcCcHH-HHHH
Q 002889 294 GNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-----QQLRLFRDLMNEGIFD-IVTD 367 (870)
Q Consensus 294 fNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~-----~R~~lf~~Lv~~GL~~-vi~~ 367 (870)
-....|++.|.+ ..++..|.+.|. |..+.+....+..||+++..++.+-+.. .-..|-+.|++.-.+. .+..
T Consensus 49 ~~~~~ilewL~~-q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 49 ESPTGILEWLAE-QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred cchHHHHHHHHH-hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 355689999986 689999999997 7778888999999999999999865432 2256888898777554 6678
Q ss_pred HHcCCCcchhhhhhHHHHHHHhcChHHHHHH----HHhcC----Cc----chHH-------HHHHHHhccC---------
Q 002889 368 ALQSQDKKLVLTGTDILILFLNQDPNLLRSY----VVRQE----GI----PLLG-------LLVKGMITDF--------- 419 (870)
Q Consensus 368 ~L~~~d~~ir~~atDILv~iiehdP~lvR~~----i~~qe----~~----~Ll~-------~Li~~ll~d~--------- 419 (870)
+|.......-..|+.|++.+|....+-.-.. ....+ +. .++. -+.++|....
T Consensus 127 mL~~~~~s~lvn~v~IlieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~ 206 (475)
T PF04499_consen 127 MLNSQGGSSLVNGVSILIELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTF 206 (475)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCC
Confidence 8864447777889999999886553321110 00110 11 1111 1223333220
Q ss_pred -----ChhH-HHHHHHHHHHhcCCCCCCc----------hhhhHHHHHHHHhhHHHHHHHHHhcCCCcccc---c-cc--
Q 002889 420 -----GEDM-HCQFLEILRSLLDSYTLSG----------AQRDTIIEIFYEKHLGQLIDVITASCPQEGIA---Q-SA-- 477 (870)
Q Consensus 420 -----d~gl-k~Ql~eaLk~LLDp~~m~~----------~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~---~-~~-- 477 (870)
-.|. +-.++|.+-.||...+|.. .+||....---+. +..+...+... ..+... . ..
T Consensus 207 G~l~~PLG~~RlkI~ELiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 284 (475)
T PF04499_consen 207 GVLIPPLGFERLKICELIAELLHCSNMSLLNEPKGEEIVYERDGERERLLEQ-LQDALNDLEID-DEDIDDNSMDDESDS 284 (475)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhCCCccccCCccccchhcCcHHHHHHHHHH-HHhhhhcccCC-ccccccccccccccC
Confidence 1232 5678999999999999852 1455444332222 23333332210 000000 0 00
Q ss_pred -CCCC--cccCCcHH---------------H-HHHHHHHHHHHHhhcc---chhhhHHhhhhHHHHHHHhhh--ccchhh
Q 002889 478 -SSGG--RVESTKPE---------------I-LSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTR--RREKYL 533 (870)
Q Consensus 478 -~~~~--~~~~~~~~---------------l-l~~l~ELL~FcV~~H~---yriK~~il~~nll~rVl~Ll~--~~~K~L 533 (870)
.... ........ . -...++.-.=-.+.-+ -.+|.-++..+++..++-|.- +-+-||
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFL 364 (475)
T PF04499_consen 285 SEDSRELEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFL 364 (475)
T ss_pred ccccccccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHH
Confidence 0000 00000000 0 0000000000001111 136777888888999988853 557899
Q ss_pred HHHHHHHHHHHhcCc-----hhHHHHHH-HhcCChHHHHHHHHHh
Q 002889 534 VVAAVRFVRTILSRH-----DEHLINHF-VKNNLLKPIVDAFVAN 572 (870)
Q Consensus 534 ~LaAlRFlR~iI~lk-----Defy~ryi-Ik~nLf~PIl~~f~~n 572 (870)
....-.++..|+... ..++..++ .+.+|..=|++....+
T Consensus 365 H~~V~diIqqiln~~~~~~~n~~L~~~Lf~~~~l~~~Il~~~~~~ 409 (475)
T PF04499_consen 365 HNVVEDIIQQILNGPMDESYNSFLVKHLFEDCDLTDRILEGWKEN 409 (475)
T ss_pred HHHHHHHHHHHhCCCCcccccHHHHHHHHhhccHHHHHHHhhhhc
Confidence 999999999999332 22333333 4667777788877665
No 39
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=59.17 E-value=1.6e+02 Score=30.39 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=71.7
Q ss_pred HHHHHHHhcCcH-----------HHHHHHHcCC-CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002889 351 RLFRDLMNEGIF-----------DIVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (870)
Q Consensus 351 ~lf~~Lv~~GL~-----------~vi~~~L~~~-d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d 418 (870)
+-|..|++||+. +++.++-+.. |..+...+..||-.++..+|.+ .+.+.+ ..-+..|+..|-.
T Consensus 39 ~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~---evt~~~Li~hLq~- 113 (160)
T PF11841_consen 39 TAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQ---EVTLESLIRHLQV- 113 (160)
T ss_pred HHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhc---cCCHHHHHHHHHc-
Confidence 357778889873 2344444444 7888899999999999988884 333332 3456677777765
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 002889 419 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 460 (870)
Q Consensus 419 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L 460 (870)
.++.++.-.+..|-+|+=-. +..+|.++.+.|..+.+...
T Consensus 114 ~~~~iq~naiaLinAL~~kA--~~~~r~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 114 SNQEIQTNAIALINALFLKA--DDSKRKEIAETLSQKQIRQV 153 (160)
T ss_pred CCHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHH
Confidence 78888887888888887332 22367789999988876543
No 40
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.91 E-value=5.6e+02 Score=33.04 Aligned_cols=130 Identities=16% Similarity=0.255 Sum_probs=72.3
Q ss_pred hHHHHHHHhHHH-HHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHH--hh-hccChHh----HHHHHHHHHh
Q 002889 287 NLNSIIHGNNAY-VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG--LS-KSLQMVQ----QLRLFRDLMN 358 (870)
Q Consensus 287 ~LnSlIffNqve-IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~--ls-K~LQ~~~----R~~lf~~Lv~ 358 (870)
.+.+-|+.-.+. |...|-+|..+|..||+.+.-+.. ...-+..|+.-+.. +. |..|.-. +..++..|+.
T Consensus 79 ~i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~p---ln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~ 155 (838)
T KOG2073|consen 79 NISCEILTSDVWPISEALVEDESLLSLLYSILEHEPP---LNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLK 155 (838)
T ss_pred cHHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCc---ccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHH
Confidence 455666666664 455688899999999999976521 11112222111111 11 1112211 4445545544
Q ss_pred c-CcHHHHHHHHcCC--CcchhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002889 359 E-GIFDIVTDALQSQ--DKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (870)
Q Consensus 359 ~-GL~~vi~~~L~~~--d~~ir~~atDILv~iiehdP-~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (870)
| |+..++.+.|+.- |.. ..| ..|-+++..++ ++..|++++....++++++-..+.|+.+
T Consensus 156 hi~~stlMD~Llkli~~de~--------------~~p~~~Viq~l~d~~---li~kll~ll~ps~~~~~qsna~~~L~~i 218 (838)
T KOG2073|consen 156 HIDISTLMDFLLKLISTDEP--------------ESPRTDVIQWLNDQE---LIPKLLELLNPSKDPDVQSNAGQTLCAI 218 (838)
T ss_pred HcCccHHHHHHHHhccccCC--------------CCchHHHHHHHhhHH---HHHHHHHHhCCccccchhHHHHHHHHHH
Confidence 3 5555555555421 211 112 23344444443 7888888888888898888777887777
Q ss_pred cC
Q 002889 435 LD 436 (870)
Q Consensus 435 LD 436 (870)
.-
T Consensus 219 v~ 220 (838)
T KOG2073|consen 219 VR 220 (838)
T ss_pred Hh
Confidence 63
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.37 E-value=2e+02 Score=36.86 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHh
Q 002889 446 DTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLL 525 (870)
Q Consensus 446 d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~L 525 (870)
-+.++-|-+..++.|++...+.. ++.|++ --|.-|..|.+|-- +--|+--+-+.++...++-+
T Consensus 546 pel~q~F~~~llpVLveVYsSsA-----------~~~VR~---kcL~Ailrlvy~s~---seli~slLk~~~vSS~lAG~ 608 (1051)
T KOG0168|consen 546 PELLQSFGKDLLPVLVEVYSSSA-----------NPDVRY---KCLSAILRLVYFSN---SELIGSLLKNTNVSSHLAGM 608 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-----------CchhhH---HHHHHHHHHHhhCC---HHHHHHHHhcchHHHHHHhh
Confidence 36778888888899988775531 112322 35677778877765 33355656667777888889
Q ss_pred hhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002889 526 TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (870)
Q Consensus 526 l~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~ 570 (870)
+.+++-.+.+.||...--+...==|.|-.|+++.++|.-|=.+..
T Consensus 609 lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 609 LSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred hhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 999999999999988777655545557778889999888876665
No 42
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=54.26 E-value=2e+02 Score=31.58 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHhcCC-CCCCc--------hhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHH
Q 002889 420 GEDMHCQFLEILRSLLDS-YTLSG--------AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEI 490 (870)
Q Consensus 420 d~glk~Ql~eaLk~LLDp-~~m~~--------~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~l 490 (870)
|.++-.-+.-.+|-||.- +.+.. .-++.++..|++..+..|+--+... +.+ .+-
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~-~~~----------------~~f 195 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASS-PQE----------------SDF 195 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhC-ccc----------------cch
Confidence 445555566678888853 33221 1467899999998887777666552 100 011
Q ss_pred HHHHHHHHHHHHhhccc
Q 002889 491 LSNICELLCFCVLHHPY 507 (870)
Q Consensus 491 l~~l~ELL~FcV~~H~y 507 (870)
-.+++|++++.++.+.-
T Consensus 196 ~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 196 NLLLLEIIYLLFKGQDP 212 (266)
T ss_pred hhHHHHHHHHHHcCCCH
Confidence 13899999999988854
No 43
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=53.85 E-value=1.8e+02 Score=30.42 Aligned_cols=160 Identities=21% Similarity=0.240 Sum_probs=98.1
Q ss_pred chhhhhhHHHHHHHhc-ChHHHHHHHHh----c--CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC--Cch--
Q 002889 375 KLVLTGTDILILFLNQ-DPNLLRSYVVR----Q--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL--SGA-- 443 (870)
Q Consensus 375 ~ir~~atDILv~iieh-dP~lvR~~i~~----q--e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m--~~~-- 443 (870)
++|..|.-.|..++.+ +|-.+-+|--. . .+..---.|...++.|.++.++.-...+|..|||.... ..+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788899999999998 88777666432 1 01111123344567899999999999999999986321 001
Q ss_pred ---hhhHHHHHHHH--hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhH
Q 002889 444 ---QRDTIIEIFYE--KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNV 518 (870)
Q Consensus 444 ---e~d~FL~~FY~--~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nl 518 (870)
.+-.|..+.-. ..+-.|=.-|+.. .. +...+.++.+++..|+-.|+.=+|+-=.-=+-..+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~-----L~---------~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~ 146 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLA-----LQ---------AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEV 146 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHH-----Hh---------cccccHHHHHHHHHHHHHHccCChhhcCHhHHHHH
Confidence 11234433221 1111111111110 00 11245678899999999999999953111222334
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002889 519 VDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (870)
Q Consensus 519 l~rVl~Ll~~~~K~L~LaAlRFlR~iI~lk 548 (870)
+..|..++..++.-.+++|+=+|-.+++..
T Consensus 147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 556667788899999999999999888764
No 44
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=53.18 E-value=1.1e+02 Score=35.67 Aligned_cols=192 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCC-------hhhHhhhhcchhHhHHhhhccc------CCCCCC
Q 002889 167 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNS-------PQIFEKIFGDELMMDIIGSLEY------DPDVPH 233 (870)
Q Consensus 167 ~~~YI~KLl~LF~~cEdle~~e~Lh~L~~IvK~IilLNd-------~~IiE~llsDe~i~~VvG~LEY------DPe~p~ 233 (870)
+..++.+|+++|+...-.|-.--...|.+|.....-+-. ..+++.+...+...||--+||. .=..|-
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Q ss_pred ccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHhHHHHHHHhhCCHH----H
Q 002889 234 VQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDST----F 309 (870)
Q Consensus 234 ~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~----F 309 (870)
+..|..||.+ |+||-+--......-..++.. +++++..|+. +
T Consensus 211 k~eh~~fl~~------------------------------vllPLh~~~~~~~y~~~L~~~----~~~f~~kdp~l~~~~ 256 (409)
T PF01603_consen 211 KEEHKQFLRK------------------------------VLLPLHKSPHLSSYHQQLSYC----VVQFLEKDPSLAEPV 256 (409)
T ss_dssp -HHHHHHHHH------------------------------TTGGGGGSTGGGGTHHHHHHH----HHHHHHH-GGGHHHH
T ss_pred cHHHHHHHHH------------------------------HHHHHhcCCcHHHHHHHHHHH----HHHHHHhCchhHHHH
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhc------------------------------
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNE------------------------------ 359 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~------------------------------ 359 (870)
+.-|+.----.+...+ +.||+|+-.+...+++..=...-..|.+.
T Consensus 257 i~~llk~WP~t~s~Ke-----v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~ 331 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKE-----VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS 331 (409)
T ss_dssp HHHHHHHS-SS-HHHH-----HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH
T ss_pred HHHHHHhCCCCCchhH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_pred ----CcHHHHHHHHc-----CCCcchhhhhhHHHHHHHhcChHHHHH
Q 002889 360 ----GIFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRS 397 (870)
Q Consensus 360 ----GL~~vi~~~L~-----~~d~~ir~~atDILv~iiehdP~lvR~ 397 (870)
.++++|-.+|. |=+..+|..+..++-.+.+.||.+..+
T Consensus 332 ~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 332 QNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp CTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
No 45
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=52.56 E-value=3.5e+02 Score=29.68 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=56.0
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002889 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (870)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr 591 (870)
.+...+.|+.....-.+.-|+|.+=.+= .+.-..++|+....+..++.+|-.+.++.||++ +|-||+-|.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS--~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~--~l~~~~ni~ 204 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLS--ENPDMTRELLSAQVLSSFLSLFNSSESKENLLR--VLTFFENIN 204 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhc--cCHHHHHHHHhccchhHHHHHHccCCccHHHHH--HHHHHHHHH
Confidence 4566788888888888888888765432 344578999999999999999999999999985 677888773
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=49.31 E-value=5.2e+02 Score=30.72 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=108.3
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHh
Q 002889 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR 401 (870)
Q Consensus 324 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv--~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~ 401 (870)
++-.+-++.++-+++.- .++|..+|..-. +...+...-..|..+|.-+...+.-||..++.+.|...-..
T Consensus 68 ~d~vqyvL~Li~dll~~-----~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~--- 139 (429)
T cd00256 68 DDTVRYVLTLIDDMLQE-----DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGS--- 139 (429)
T ss_pred HHHHHHHHHHHHHHHHh-----chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchh---
Confidence 34455555566666554 245555554321 22333333336778888899999999999998876421110
Q ss_pred cCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCCC
Q 002889 402 QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSG 480 (870)
Q Consensus 402 qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~-~~~~L~~pL~~~~p~e~~~~~~~~~ 480 (870)
....+++.|++++-...+.+.+......|..||-.. .|=..|.+. ++..|+.-|-..
T Consensus 140 -~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~--------~~R~~f~~~~~v~~L~~~L~~~------------- 197 (429)
T cd00256 140 -DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD--------EYRFAFVLADGVPTLVKLLSNA------------- 197 (429)
T ss_pred -HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc--------hHHHHHHHccCHHHHHHHHhhc-------------
Confidence 111245566766655444555544556676776332 233445543 444444433211
Q ss_pred CcccCCcHHHHHH---HHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhh--ccchhhHHHHHHHHHHHhcCch-----h
Q 002889 481 GRVESTKPEILSN---ICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRHD-----E 550 (870)
Q Consensus 481 ~~~~~~~~~ll~~---l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~--~~~K~L~LaAlRFlR~iI~lkD-----e 550 (870)
....+++.+ .+=+|||.-. .-...-..+++..++.+++ .|+|..+++ +-.||+++...- .
T Consensus 198 ----~~~~Ql~Y~~ll~lWlLSF~~~-----~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~-l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 198 ----TLGFQLQYQSIFCIWLLTFNPH-----AAEVLKRLSLIQDLSDILKESTKEKVIRIV-LAIFRNLISKRVDREVKK 267 (429)
T ss_pred ----cccHHHHHHHHHHHHHHhccHH-----HHHhhccccHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhhcccccchhh
Confidence 012244322 3334555433 1122334567888777765 688999874 778899998642 3
Q ss_pred HHHHHHHhcCCh
Q 002889 551 HLINHFVKNNLL 562 (870)
Q Consensus 551 fy~ryiIk~nLf 562 (870)
.+.--|+..++.
T Consensus 268 ~~~~~mv~~~l~ 279 (429)
T cd00256 268 TAALQMVQCKVL 279 (429)
T ss_pred hHHHHHHHcChH
Confidence 344455555553
No 47
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=48.75 E-value=85 Score=38.68 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHH
Q 002889 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIV 566 (870)
Q Consensus 487 ~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl 566 (870)
+..+++-||-| |-+-+- .|.+|+++|.+..+..++..++--++-.+++|+|..+-..|+-.....- ..+++-.+
T Consensus 436 ~~~~lgai~Nl----Vmefs~-~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~-~ki~a~~i 509 (678)
T KOG1293|consen 436 MGITLGAICNL----VMEFSN-LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL-AKIPANLI 509 (678)
T ss_pred HHHHHHHHHHH----Hhhccc-HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH-HHhhHHHH
Confidence 34455555544 333222 3779999999999999999999888899999999998777764433332 23444445
Q ss_pred HHHHHhCCCCcchHHHHHH-HHHHHHh--hChHHHHHHHHHHhHhhcccc
Q 002889 567 DAFVANGNRYNLLNSAVLE-LFEYIRK--ENLKSLVKYIVDSFWNQLVNF 613 (870)
Q Consensus 567 ~~f~~ng~R~NLLnSA~LE-LfefIr~--eNik~Li~hlVe~y~~~l~~i 613 (870)
..|..+.+- +|+| .|.-.|. -|-+..+.||+++|.+.+.++
T Consensus 510 ~~l~nd~d~------~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i 553 (678)
T KOG1293|consen 510 LDLINDPDW------AVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKI 553 (678)
T ss_pred HHHHhCCCH------HHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHH
Confidence 555444432 4444 3444443 366788999999999988764
No 48
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=48.23 E-value=4.5e+02 Score=29.66 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccC---C-----
Q 002889 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDF---G----- 420 (870)
Q Consensus 350 ~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP-~lvR~~i~~qe~~~Ll~~Li~~ll~d~---d----- 420 (870)
..+.+++++.- ++.|.-.|+.....+...+.-+|..|+.++. .+.|.. ++.=+.+ +..+.+++--.. .
T Consensus 47 ~~l~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v-~~~fd~~-~~~l~kll~~~~~~~~~~~~~ 123 (330)
T PF11707_consen 47 LELIRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREV-LRSFDFS-LKSLPKLLTPRKKEKEKDSES 123 (330)
T ss_pred HHHHHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHH-HHhcCCc-hhhHHHHhccccccccccccc
Confidence 45778887665 8999999999988888888999999999554 666654 3321111 111222221110 0
Q ss_pred ----hhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHH
Q 002889 421 ----EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICE 496 (870)
Q Consensus 421 ----~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~E 496 (870)
+.++..+..-+-.+|...+- .-+..+|+. ..++..++.. +..-.+++...+++
T Consensus 124 ~~~~~siR~~fI~F~Lsfl~~~~~--~~~~~lL~~------~~~~~~l~k~---------------l~~D~~~~v~~iL~ 180 (330)
T PF11707_consen 124 SKSKPSIRTNFIRFWLSFLSSGDP--ELKRDLLSQ------KKLMSALFKG---------------LRKDPPETVILILE 180 (330)
T ss_pred cccCcCHHHHHHHHHHHHHccCCH--HHHHHHHHc------CchHHHHHhc---------------ccCCCHHHHHHHHH
Confidence 13333333333333322110 011112211 1112222221 01114567778888
Q ss_pred HHHHHHhhcc---chhhhHHhhhhHHHHHHHhhhccch----hhHHHHHHHHHHHh
Q 002889 497 LLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREK----YLVVAAVRFVRTIL 545 (870)
Q Consensus 497 LL~FcV~~H~---yriK~~il~~nll~rVl~Ll~~~~K----~L~LaAlRFlR~iI 545 (870)
.|.=.|-+.+ ...|..+++...+.+++.|-...+. -++=.|-+||..+-
T Consensus 181 ~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 181 TLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred HHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHh
Confidence 8886666655 5678999999999999998877776 67777777777643
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.70 E-value=6e+02 Score=30.96 Aligned_cols=200 Identities=17% Similarity=0.190 Sum_probs=121.1
Q ss_pred HHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 002889 353 FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 432 (870)
Q Consensus 353 f~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk 432 (870)
.+..++.|-.+++-..+.+++..++--|+=-|-.|+-+.|. .|.|++... .+.-|...+.......+.-+++=+|.
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g---~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCG---ALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhc---chHHHHHHhccccchHHHHHHHHHHH
Confidence 44557788888888888888888877666666666655555 688887754 22233333333333355555666666
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhH
Q 002889 433 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 512 (870)
Q Consensus 433 ~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~ 512 (870)
-|.--.+-..+ -+. -...++.|+.-|. ..+++++...|=.|+|.+-+-.-.|. .
T Consensus 221 Nlcrgk~P~P~-~~~-----v~~iLp~L~~ll~-------------------~~D~~Vl~Da~WAlsyLsdg~ne~iq-~ 274 (514)
T KOG0166|consen 221 NLCRGKNPSPP-FDV-----VAPILPALLRLLH-------------------STDEEVLTDACWALSYLTDGSNEKIQ-M 274 (514)
T ss_pred HHHcCCCCCCc-HHH-----HHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhcCChHHHH-H
Confidence 66533321111 000 0112233333222 23556777777788887766666554 4
Q ss_pred HhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002889 513 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (870)
Q Consensus 513 il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (870)
++.-.++.|+..||....--++..|||-+=+|+ ..++.-..-+|-.+++. ++..+..+.+..++--.||-
T Consensus 275 vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~-~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-TGSDEQTQVVINSGALP-VLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred HHHccchHHHHHHHcCCCcccccHHHhhcccee-eccHHHHHHHHhcChHH-HHHHHhccCcchhHHHHHHH
Confidence 677778899998888777777789999888855 55555667777777664 44444455555555444554
No 50
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=47.25 E-value=23 Score=25.93 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=25.3
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv~iieh 390 (870)
|++.+-..+++++..+|.+|+.-|..|.+|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 577888899999999999999999888765
No 51
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=46.34 E-value=3.3e+02 Score=31.60 Aligned_cols=63 Identities=19% Similarity=0.395 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHH
Q 002889 332 HFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYV 399 (870)
Q Consensus 332 ~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i 399 (870)
.+|.-+..+-++... ..+...+- .|++++-.+|..+|..++.++.++|..+++..|..+-.|+
T Consensus 342 ~yL~ALs~ll~~vP~---~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 342 NYLTALSHLLKNVPK---SVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred HHHHHHHHHHhhCCH---HHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 345566666676652 22222222 2889999999999999999999999999999999988865
No 52
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=46.16 E-value=56 Score=33.22 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCC----CCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH
Q 002889 426 QFLEILRSLLDSYT----LSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 501 (870)
Q Consensus 426 Ql~eaLk~LLDp~~----m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fc 501 (870)
.++++|-.+|+.+. -..+++|+|+++|.+-|...|=.|-. .....+-..++++||.|
T Consensus 100 ~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~-------------------~K~~~ik~~if~il~~~ 160 (171)
T PF12922_consen 100 RILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEI-------------------VKNKSIKDAIFRILGTA 160 (171)
T ss_pred HHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHh-------------------hccHHHHHHHHHHHHHH
Confidence 34445555554322 11348999999988877644311110 11335667999999999
Q ss_pred Hhhccch
Q 002889 502 VLHHPYR 508 (870)
Q Consensus 502 V~~H~yr 508 (870)
|.+|.+-
T Consensus 161 vk~h~h~ 167 (171)
T PF12922_consen 161 VKKHNHA 167 (171)
T ss_pred HHHcccc
Confidence 9999874
No 53
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=45.69 E-value=50 Score=37.76 Aligned_cols=91 Identities=12% Similarity=0.262 Sum_probs=66.1
Q ss_pred hHHhhhhHHHHHHHhhh-ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHH-HHHhCCC--CcchHHHHHHH
Q 002889 511 CNFLLNNVVDKVLLLTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA-FVANGNR--YNLLNSAVLEL 586 (870)
Q Consensus 511 ~~il~~nll~rVl~Ll~-~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~-f~~ng~R--~NLLnSA~LEL 586 (870)
.|+++++++.++..+-. ....-.+..++||+.++|+.-++= .+...++..||+++ +..-|.. ..-......+|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 48899999999999954 455788999999999999986654 56677999999999 7655543 56677777777
Q ss_pred HHHHHh--hChHHHHHHHHH
Q 002889 587 FEYIRK--ENLKSLVKYIVD 604 (870)
Q Consensus 587 fefIr~--eNik~Li~hlVe 604 (870)
+..|.. ..-..|+.+..+
T Consensus 80 L~~lc~~i~~~P~ll~~ff~ 99 (353)
T PF10257_consen 80 LNTLCSKIRKDPSLLNFFFE 99 (353)
T ss_pred HHHHHHHHHhCHHHHHHHhc
Confidence 776643 222334444443
No 54
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.49 E-value=3.1e+02 Score=27.00 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=73.4
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++..+..++....+.+ - .+-++|.+.+.-....+.. ..+|.--|++.++.+...|..+|=+|+.
T Consensus 6 ~~~li~kATs~~~~~~Dw---~-~~l~icD~i~~~~~~~kea----------~~~l~krl~~~~~~vq~~aL~lld~lvk 71 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDW---S-LILEICDLINSSPDGAKEA----------ARALRKRLKHGNPNVQLLALTLLDALVK 71 (140)
T ss_dssp HHHHHHHHT-TTSSS--H---H-HHHHHHHHHHTSTTHHHHH----------HHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCH---H-HHHHHHHHHHcCCccHHHH----------HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456666676665544433 2 2236787766554444543 4677888899999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChh---HHHHHHHHHHHhc
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED---MHCQFLEILRSLL 435 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~g---lk~Ql~eaLk~LL 435 (870)
+....++..+.++ .+++.|.+++-...... ++..+.+.|..+=
T Consensus 72 Ncg~~f~~ev~~~---~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 72 NCGPRFHREVASK---EFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HSHHHHHHHHTSH---HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhHH---HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 9877777665543 48888887766544443 7888877776663
No 55
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=44.08 E-value=89 Score=29.29 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=45.1
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (870)
|++.+=..+.++|..+|-.|++-|..+..+-...+=.+.- -+++.|++ ++.|.++.++.- ++.|-.|
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~-----~IF~~L~k-l~~D~d~~Vr~~-a~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN-----EIFDALCK-LSADPDENVRSA-AELLDRL 94 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHcCCchhHHHH-HHHHHHH
Confidence 3455557778999999999999999988776544333322 26677776 457888888743 3444333
No 56
>PF05536 Neurochondrin: Neurochondrin
Probab=43.93 E-value=6.8e+02 Score=30.52 Aligned_cols=205 Identities=16% Similarity=0.200 Sum_probs=118.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-------CCcchhhhh
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-------QDKKLVLTG 380 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~-------~d~~ir~~a 380 (870)
.-|.+....|+... ++.|.=++.++.-+|. +.......|...|.++ | ++.+.-.|+. +....+..|
T Consensus 5 ~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~-~~~~~~~~~~~v~~ai---g-~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD--DTERFAGLLLVTKLLD-ADDEDSQTRRRVFEAI---G-FKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHHHhccCC--cHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhc---C-hhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 44777888888766 6888899988888776 3333333444456333 4 5777777765 224467888
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 002889 381 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 460 (870)
Q Consensus 381 tDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L 460 (870)
.-||.++.. +|.+.++.-+ ..-+-.|++.+....+.++..-..+.|..+.-. -.|+ -.+.....+..|
T Consensus 78 vsvL~~f~~-~~~~a~~~~~----~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~-----~aLl~~g~v~~L 145 (543)
T PF05536_consen 78 VSVLAAFCR-DPELASSPQM----VSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGA-----KALLESGAVPAL 145 (543)
T ss_pred HHHHHHHcC-ChhhhcCHHH----HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhH-----HHHHhcCCHHHH
Confidence 999988776 7876544211 013345667676666656666666777777521 1121 112223445666
Q ss_pred HHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHH
Q 002889 461 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRF 540 (870)
Q Consensus 461 ~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF 540 (870)
+.-+... ...-+...+++..|+--...+... ++.-.-..++.++.......++-.+..+++|
T Consensus 146 ~ei~~~~-----------------~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~ 207 (543)
T PF05536_consen 146 CEIIPNQ-----------------SFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEF 207 (543)
T ss_pred HHHHHhC-----------------cchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 5555331 011123334444444444433322 3344444566777777777777777777888
Q ss_pred HHHHhcCch
Q 002889 541 VRTILSRHD 549 (870)
Q Consensus 541 lR~iI~lkD 549 (870)
+-.++...+
T Consensus 208 L~~~L~~~~ 216 (543)
T PF05536_consen 208 LSAFLPRSP 216 (543)
T ss_pred HHHhcCcCC
Confidence 777776663
No 57
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.84 E-value=9.2e+02 Score=31.99 Aligned_cols=271 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHh--HHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhH--HHHHHHHHHHHHhhhccChHhHHHHHHHHHh
Q 002889 283 ATVANLNSIIHGN--NAYVVSLLKDDSTFIQELFARLRSPTTLEESK--KNLVHFLHEFCGLSKSLQMVQQLRLFRDLMN 358 (870)
Q Consensus 283 ~t~s~LnSlIffN--qveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~r--rdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~ 358 (870)
.....+++++-.+ +.+.+.+.. .+|+.++..+.......+.. .++..-|-|+.. ..-.+++
T Consensus 178 ~a~rA~~a~~~~~~~~~~~~~~~~---~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e------------~~pk~l~ 242 (1075)
T KOG2171|consen 178 AAVRALGAFAEYLENNKSEVDKFR---DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE------------SEPKLLR 242 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH---HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh------------hchHHHH
Q ss_pred cCcHHHHHHHHc-----CCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCCh------------
Q 002889 359 EGIFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE------------ 421 (870)
Q Consensus 359 ~GL~~vi~~~L~-----~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~------------ 421 (870)
.-+-.+|++.|+ +=+..+|..|.++|+++++.-|.+.|..-. -+.+|+-.+...|-...+.
T Consensus 243 ~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~--~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL--LGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh--hhccHHHHHHHhcCCcccchhhccccccccc
Q ss_pred ------hHHHHHHHHHHHhcCCCCCCch---hhhHHHH---HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHH
Q 002889 422 ------DMHCQFLEILRSLLDSYTLSGA---QRDTIIE---IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPE 489 (870)
Q Consensus 422 ------glk~Ql~eaLk~LLDp~~m~~~---e~d~FL~---~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ 489 (870)
-+..|..+-|-.=|.|+.+-.+ .-..+|+ ++|.|-.=.-+..+.++|+ +.....
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--------------~~m~~~ 386 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--------------DVMIGN 386 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--------------HHHHHH
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHH-hcCchhHHHHHHHhcCChHHHHHH
Q 002889 490 ILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI-LSRHDEHLINHFVKNNLLKPIVDA 568 (870)
Q Consensus 490 ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~i-I~lkDefy~ryiIk~nLf~PIl~~ 568 (870)
+ .+++.-|+..++.+|.-++.+|+-.+-.+ --+..++=..| +..+-|-+-.
T Consensus 387 l-------------------------~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~---~e~l~~aL~~ 438 (1075)
T KOG2171|consen 387 L-------------------------PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH---HERLPPALIA 438 (1075)
T ss_pred H-------------------------HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH---HHhccHHHHH
Q ss_pred HHHhCCC---CcchHHHHHHHHHHHHhhChHHHHHHHHH-HhHhhccc
Q 002889 569 FVANGNR---YNLLNSAVLELFEYIRKENLKSLVKYIVD-SFWNQLVN 612 (870)
Q Consensus 569 f~~ng~R---~NLLnSA~LELfefIr~eNik~Li~hlVe-~y~~~l~~ 612 (870)
....-.. .+=.-+|.+.|+|+.-++=+.+.+..|++ ++...+.+
T Consensus 439 ~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 439 LLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
No 58
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.42 E-value=2.3e+02 Score=28.40 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=74.9
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcC
Q 002889 312 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD 391 (870)
Q Consensus 312 eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehd 391 (870)
++..+..++....+.+ ..+-++|.+.++=....|.. +.+|.--|++.++.+...|..+|-+|+..-
T Consensus 3 ~~iekATse~l~~~dw----~~il~icD~I~~~~~~~k~a----------~ral~KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 3 DLVEKATDEKLTSENW----GLILDVCDKVKSDENGAKDC----------LKAIMKRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHHHHcCccCCCcCH----HHHHHHHHHHhcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 4455555555443333 44557887776544444543 456777788999999999999999999999
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 392 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 392 P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
...++..+.+ ..+++.|++.+-...+..++.-+.+.|+.+=
T Consensus 69 G~~fh~evas---k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 69 GKRFHQEVAS---RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred CHHHHHHHhh---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 8888776654 3477887776655577888888888777764
No 59
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.40 E-value=1.5e+02 Score=35.62 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcCcHHHHHHH---Hc-CC--CcchhhhhhHHHHHHHhcChHHHHHHH
Q 002889 327 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQ-SQ--DKKLVLTGTDILILFLNQDPNLLRSYV 399 (870)
Q Consensus 327 rrdlV~FL~E~c~lsK~LQ-~~~R~~lf~~Lv~~GL~~vi~~~---L~-~~--d~~ir~~atDILv~iiehdP~lvR~~i 399 (870)
..+++.+|++.+.-++.=+ ...+..+.++|-+.|.-.++... +. .. ...+|.+|+--|--+..++|..+|..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 3567777777766654322 23355677889999876655433 33 22 235899999999888999999999976
Q ss_pred Hh
Q 002889 400 VR 401 (870)
Q Consensus 400 ~~ 401 (870)
+.
T Consensus 520 ~~ 521 (574)
T smart00638 520 LP 521 (574)
T ss_pred HH
Confidence 65
No 60
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=42.31 E-value=1.1e+03 Score=32.92 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=46.3
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 381 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 381 tDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
.-++..++++++. .|..+.+.....++.+|...+-+...+.||..++.+|..|+
T Consensus 585 L~Li~~V~~~s~~-ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 585 LRLISSVVRNSEQ-ARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHhcCHH-HHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3556678888865 78888888778889999999999999999999999999997
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.17 E-value=9.9e+02 Score=31.91 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=23.9
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCch
Q 002889 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (870)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkD 549 (870)
++.-|-..+.++....+-+||+|+|.+|..-.
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC
Confidence 33444455778888899999999999886533
No 62
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=40.85 E-value=75 Score=38.01 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=91.4
Q ss_pred HHHHHHHhhCC-------HHHHHHHHHHhCCCCCcHHhHHHHHHHH---HHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002889 296 NAYVVSLLKDD-------STFIQELFARLRSPTTLEESKKNLVHFL---HEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 365 (870)
Q Consensus 296 qveIV~~Lq~d-------~~FL~eLF~~l~~~~~~~e~rrdlV~FL---~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi 365 (870)
|.-|+++|..+ +..++=+|.-+.++++...-|.-++.|+ +..+.. . .+......+..+..|+.+.+
T Consensus 300 q~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~---~-~~~~l~~l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 300 QEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH---I-SPQILKLLRPVILSQGWPLI 375 (501)
T ss_pred HHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhh---c-CHHHHHHHHHHHHhcCcccc
Confidence 55677776643 2345555555666655556677888898 544332 2 23455677788888888887
Q ss_pred HH----HHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 366 TD----ALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 366 ~~----~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
.. .-...+...|..+-+.|-.+...+|.++.+ +..++..|-+.| .+..++++..+-|||-.|+
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~------d~~li~~LF~sL-~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK------DLSLIEFLFDSL-EDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccc------cHHHHHHHHHHh-hCcchHHHHHHHHHHHHHH
Confidence 31 223456678999999999999999998754 567888888888 7778899999999988885
No 63
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=40.70 E-value=5.4e+02 Score=28.41 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=66.9
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH-HHhcChHHHHHHHHh
Q 002889 323 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL-FLNQDPNLLRSYVVR 401 (870)
Q Consensus 323 ~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~-iiehdP~lvR~~i~~ 401 (870)
+..-|..++.-|=-||-+.|.+-.+. +.++-.++..++..++..|.-++.- ++.|.+..+......
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a~~~-------------l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELAKEH-------------LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHH-------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 44788899999999998887553221 1223334455688888888777765 445676665543221
Q ss_pred ---cCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 002889 402 ---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 438 (870)
Q Consensus 402 ---qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 438 (870)
.....++.++.+.+-.+ ++.++....|.+-.||=..
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcC
Confidence 11246777777776665 8889999999888776443
No 64
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.19 E-value=40 Score=39.42 Aligned_cols=94 Identities=19% Similarity=0.333 Sum_probs=71.7
Q ss_pred CeeEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcce-eEeecCCCCcccccc--CeEEEecCCCcc---c
Q 002889 15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETI-LLHRISPDDIYRKQE--DTIISWRDPEYS---T 88 (870)
Q Consensus 15 ~RVKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~L-L~s~I~~~d~YqkQq--eTLIvWte~~~g---~ 88 (870)
+|+||+-..+ .+..|+|+|-.......+ +...|+||..-+-..| |..=+.++-.-+||. .-+||-.-+... .
T Consensus 386 KkckvfykKd-KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp~~e~t~p~ 463 (487)
T KOG2724|consen 386 KKCKVFYKKD-KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVPPSESTEPA 463 (487)
T ss_pred cccceEEEec-ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeCCcccccce
Confidence 7899988885 689999999887776666 6788999988765444 445566777777877 458888765433 3
Q ss_pred cccccccCccchhHHHHHHHHH
Q 002889 89 ELALSFQEPTGCSYIWDNICNV 110 (870)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~V 110 (870)
-|-|.|-..+|.+++-+.|.++
T Consensus 464 TmLIRvktad~aD~L~~kI~E~ 485 (487)
T KOG2724|consen 464 TMLIRVKTADGADKLTDKILEV 485 (487)
T ss_pred eEEEEecccchHHHHHHHHHhh
Confidence 5678899999999999988875
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.45 E-value=1.6e+02 Score=36.97 Aligned_cols=249 Identities=18% Similarity=0.210 Sum_probs=140.4
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC-
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT- 439 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~- 439 (870)
++.-|..++++.++-+|.+++.....+-+.+|.+++ +..|+..|-++ +.|.++++-+-...+|..+.+..+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~-------~~gl~~~L~~l-l~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE-------DSGLVDALKDL-LSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc-------ccchhHHHHHH-hcCCCchHHHHHHHHHHHHHHhCCC
Confidence 344455667788888999888888888888887765 35577776654 458899987777778877776553
Q ss_pred CCch-hhhHHHHHHHH---hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccch-----hh
Q 002889 440 LSGA-QRDTIIEIFYE---KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR-----IK 510 (870)
Q Consensus 440 m~~~-e~d~FL~~FY~---~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yr-----iK 510 (870)
+... .--.+++.+-+ .|-.|---+++..... . . +. +..=...||+.++=..+|-.-+ .|
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~-y----~-p~------d~~ea~~i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTEWGQIFILDCLAE-Y----V-PK------DSREAEDICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh-c----C-CC------CchhHHHHHHHhhhhhccCCcceEeehHH
Confidence 2111 11122222221 2333333333321000 0 0 00 0000123455544333333221 11
Q ss_pred hHH--------hhhhHHHHHHH---hhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCCh---HHH------HHHHH
Q 002889 511 CNF--------LLNNVVDKVLL---LTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLL---KPI------VDAFV 570 (870)
Q Consensus 511 ~~i--------l~~nll~rVl~---Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf---~PI------l~~f~ 570 (870)
-+. ..+.+..|+.. .+-+...-+...|+|=++-++...++ +.+.=++.=.+ +|| ++++.
T Consensus 262 v~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiYvK~eKleil~ 340 (734)
T KOG1061|consen 262 VILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIYVKLEKLEILI 340 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchhhHHHHHHHHH
Confidence 111 22334555531 24567777788999999999999998 77877777544 465 45565
Q ss_pred HhCCCCcchHHHHHHHHHHHHhh-------ChHHHH---------HHHHHHhHhhcc-cccch-----hhHHHHHHhhhh
Q 002889 571 ANGNRYNLLNSAVLELFEYIRKE-------NLKSLV---------KYIVDSFWNQLV-NFEYL-----ASLHSFKVKYEQ 628 (870)
Q Consensus 571 ~ng~R~NLLnSA~LELfefIr~e-------Nik~Li---------~hlVe~y~~~l~-~i~yv-----~tF~~L~~rYeq 628 (870)
+--+..|+-. ..-||-+|---- -|+.+= +.+|..+=+.++ +++|| .+|+.+-.+|.|
T Consensus 341 ~la~~~nl~q-vl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 341 ELANDANLAQ-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred HHhhHhHHHH-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 6566667766 666777765321 122111 335555555555 56676 378888888888
Q ss_pred hcc
Q 002889 629 CLE 631 (870)
Q Consensus 629 ~~~ 631 (870)
.-+
T Consensus 420 ~~~ 422 (734)
T KOG1061|consen 420 KYE 422 (734)
T ss_pred chh
Confidence 743
No 66
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=39.34 E-value=17 Score=37.75 Aligned_cols=53 Identities=19% Similarity=0.469 Sum_probs=38.0
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCC
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISP 67 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~ 67 (870)
-|.|+|+... -..|..||||-|....-..+..+.|+++-..-....-.|-|.|
T Consensus 95 ~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklcaNH~i~P 148 (211)
T COG5171 95 ARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINP 148 (211)
T ss_pred hhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhhhhccCc
Confidence 5999999964 5689999999999876666677888887665443333344444
No 67
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=37.97 E-value=4.5e+02 Score=28.95 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchh
Q 002889 365 VTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 444 (870)
Q Consensus 365 i~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e 444 (870)
+...|.++|..+|..|+..|..+++.=|.-. +-+++-..|++..++.| +....+..- ..+|..|+.-.......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl--~D~~~~~~~-l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRL--DDHACVQPA-LKGLLALVKMKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHh--ccHhhHHHH-HHHHHHHHhCcCCChhh
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHH
Q 002889 445 RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL 524 (870)
Q Consensus 445 ~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~ 524 (870)
-..+++.+++++ .++......=..+.+||-+.+.+|.--+ .=+..+.+..+++
T Consensus 78 ~~~i~~~l~~~~-------------------------~~q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 78 AVKILRSLFQNV-------------------------DVQSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQ 130 (262)
T ss_pred HHHHHHHHHHhC-------------------------ChhhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHH
Q ss_pred hhh-ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHH
Q 002889 525 LTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (870)
Q Consensus 525 Ll~-~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f 569 (870)
++. -|+.=--+-+.+.++.++..=| + .+..+-+++++
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~-------~-~~~~e~lFd~~ 168 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFD-------I-SEFAEDLFDVF 168 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcc-------c-chhHHHHHHHh
No 68
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.81 E-value=1.1e+03 Score=30.38 Aligned_cols=252 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcH
Q 002889 283 ATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 362 (870)
Q Consensus 283 ~t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~ 362 (870)
.+...|++++-.--.+.=+.|+..|.=+..|...++|.-. .-|.++++||.++..=.-++| |..-|.+...+ ||
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--~IRNe~iLlL~eL~k~n~~IQ---KlVAFENaFer-Lf 214 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--PIRNEAILLLSELVKDNSSIQ---KLVAFENAFER-LF 214 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--hhchhHHHHHHHHHccCchHH---HHHHHHHHHHH-HH
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCc--chHHHHHHHHhcc-CChhHHHH-------HHHHHH
Q 002889 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGI--PLLGLLVKGMITD-FGEDMHCQ-------FLEILR 432 (870)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~--~Ll~~Li~~ll~d-~d~glk~Q-------l~eaLk 432 (870)
.+|+.==..+..-|.--+.=.|..++-.+.+ .+-+++..+. .|..+|-.-...+ -..|-..| +.+++|
T Consensus 215 sIIeeEGg~dGgIVveDCL~ll~NLLK~N~S--NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr 292 (970)
T KOG0946|consen 215 SIIEEEGGLDGGIVVEDCLILLNNLLKNNIS--NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR 292 (970)
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhhCcc--hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHH
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc-CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhh
Q 002889 433 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS-CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC 511 (870)
Q Consensus 433 ~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~-~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~ 511 (870)
+|.-|.+-.+.....-=-.+=.+.++.|...++.. .|-+. -...+.-+-|.+--|-+...+..+-
T Consensus 293 ~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI--------------ltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 293 SLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI--------------LTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH--------------HHHHHHHHHHHHHhchHHHHHHhhc
Q ss_pred HHhhhh-----HHHHHHHhhhccch-hhHHHHHHHHHHHhcCchhHHHHHH
Q 002889 512 NFLLNN-----VVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDEHLINHF 556 (870)
Q Consensus 512 ~il~~n-----ll~rVl~Ll~~~~K-~L~LaAlRFlR~iI~lkDefy~ryi 556 (870)
-+-..+ ++--...+..+++. -++.|.++|||+.+..+|+-=-+++
T Consensus 359 ~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 359 TAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred cCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
No 69
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=34.37 E-value=3.9e+02 Score=27.11 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=79.1
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 002889 363 DIVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 441 (870)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDILv~iiehd-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 441 (870)
.-|.-.|++.+..-|-.|+-++..+++++ +..+.++ ...++..|+..+=....+.++.-...+|..|++--.
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-----~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~-- 100 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-----GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR-- 100 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 34667788999999999999999999998 6655222 345666777666555555666666666666664211
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhH
Q 002889 442 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 512 (870)
Q Consensus 442 ~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~ 512 (870)
.+.++-.-+--..++.++.+++..... .......++.|.=|+.+|+--+|.|
T Consensus 101 --~~p~l~Rei~tp~l~~~i~~ll~l~~~-----------------~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 101 --GKPTLTREIATPNLPKFIQSLLQLLQD-----------------SSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred --CCCchHHHHhhccHHHHHHHHHHHHhc-----------------cccHHHHHHHHHHHHHHCCccccch
Confidence 111122222233467777777664210 2334577899999999999877764
No 70
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=34.08 E-value=4.9e+02 Score=25.99 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=71.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++.....++....+. ...+-|+|.+...=+...|.. +.+|..-|++.++.+...|..+|-+|+.
T Consensus 5 ~~~~I~kATs~~l~~~d----w~~ileicD~In~~~~~~k~a----------~ral~krl~~~n~~vql~AL~LLe~~vk 70 (142)
T cd03569 5 FDELIEKATSELLGEPD----LASILEICDMIRSKDVQPKYA----------MRALKKRLLSKNPNVQLYALLLLESCVK 70 (142)
T ss_pred HHHHHHHHcCcccCccC----HHHHHHHHHHHhCCCCCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 45566666665442222 334456777765443334433 4667777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
+--..++..+.. ..+++.|++.+-...++.++..+.+.+..+=
T Consensus 71 NCG~~fh~evas---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 71 NCGTHFHDEVAS---REFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HCCHHHHHHHhh---HHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 865555554443 4488888876655667778777777776664
No 71
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.01 E-value=2e+02 Score=31.66 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=50.3
Q ss_pred hccchhhhHHhhhhHHHHHHHhhhc-----------cchhhHHHHHHHHHHHhcCch-----------hHHHHHH----H
Q 002889 504 HHPYRIKCNFLLNNVVDKVLLLTRR-----------REKYLVVAAVRFVRTILSRHD-----------EHLINHF----V 557 (870)
Q Consensus 504 ~H~yriK~~il~~nll~rVl~Ll~~-----------~~K~L~LaAlRFlR~iI~lkD-----------efy~ryi----I 557 (870)
+|-+..|.-|+..+++.-|+.++.. .+.-+.=-.|-|+|+++...| ...+.-+ -
T Consensus 96 ~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~ 175 (266)
T PF04821_consen 96 KYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALF 175 (266)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHH
Confidence 4445678889998888777765521 122333356889999988833 2222222 2
Q ss_pred hcCChHHHHHHHHHh-CCCCcchHHHHHHHHHHHHhh
Q 002889 558 KNNLLKPIVDAFVAN-GNRYNLLNSAVLELFEYIRKE 593 (870)
Q Consensus 558 k~nLf~PIl~~f~~n-g~R~NLLnSA~LELfefIr~e 593 (870)
+.++++-++.+.-.- +.. .+..+||+|.+|-++
T Consensus 176 ~~~v~~lLL~l~s~~~~~~---f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 176 ESGVLDLLLTLASSPQESD---FNLLLLEIIYLLFKG 209 (266)
T ss_pred HcCHHHHHHHHHhCccccc---hhhHHHHHHHHHHcC
Confidence 556666665444322 222 333777777776553
No 72
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.47 E-value=1.7e+02 Score=33.66 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=63.8
Q ss_pred HhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002889 286 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 365 (870)
Q Consensus 286 s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi 365 (870)
.+|.+ ++-||..+...+-+.. ||+.|+.++.... +...|..+ |.-+|++-+|-++-.. .|+ .-.| +.++
T Consensus 146 ~Vigt-~~qNNP~~Qe~v~E~~-~L~~Ll~~ls~~~-~~~~r~ka---L~AissLIRn~~~g~~-~fl---~~~G-~~~L 214 (342)
T KOG2160|consen 146 RVIGT-AVQNNPKSQEQVIELG-ALSKLLKILSSDD-PNTVRTKA---LFAISSLIRNNKPGQD-EFL---KLNG-YQVL 214 (342)
T ss_pred HHHHH-HHhcCHHHHHHHHHcc-cHHHHHHHHccCC-CchHHHHH---HHHHHHHHhcCcHHHH-HHH---hcCC-HHHH
Confidence 34444 4556666666665543 9999999998443 33443333 3567788888776433 232 3356 9999
Q ss_pred HHHHcC--CCcchhhhhhHHHHHHHhcChH
Q 002889 366 TDALQS--QDKKLVLTGTDILILFLNQDPN 393 (870)
Q Consensus 366 ~~~L~~--~d~~ir~~atDILv~iiehdP~ 393 (870)
..+|++ .+...+..++-.+..++.-+++
T Consensus 215 ~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 215 RDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999998 5556667788888777776665
No 73
>KOG4035 consensus Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover [Signal transduction mechanisms; Cytoskeleton]
Probab=32.86 E-value=6.1e+02 Score=29.80 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=109.2
Q ss_pred cCCCCCC---ccchhHhhhhcCCceeeeecCChHHHHHHHhhheee-ee----e----ehhcc-cccchhhHHhHHHHHH
Q 002889 227 YDPDVPH---VQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVG-YL----K----DVVLA-RVLDEATVANLNSIIH 293 (870)
Q Consensus 227 YDPe~p~---~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLq-YL----K----DVVLp-RiLDD~t~s~LnSlIf 293 (870)
-|+..|- .++.-+||.+.+.|.++= ....++.-|-.|+|.. -+ + ++||| -...|---...|--++
T Consensus 125 ad~~i~~~~~s~~qfe~ls~lv~~~q~e--~r~sl~~~ilst~~al~~lD~~iid~ll~svL~~k~v~~~~td~~~~~~~ 202 (411)
T KOG4035|consen 125 ADGFIPLYVISANQFEWLSQLVAYYQME--QRDSLRELILSTFRALCSLDEPIIDILLDSVLPIKLVEDMQTDKSNGQQI 202 (411)
T ss_pred cCCcchhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhcccchHHHHHHHhhccchhhhHHHhhhhccHHHH
Confidence 5666553 357778888877777653 2367888888899822 11 2 22222 0111111001111111
Q ss_pred HhHHHHHHHhhCC-------------HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChH----hHHHHHHHH
Q 002889 294 GNNAYVVSLLKDD-------------STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV----QQLRLFRDL 356 (870)
Q Consensus 294 fNqveIV~~Lq~d-------------~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~----~R~~lf~~L 356 (870)
.--..++.+++.+ ..|.+.||.+..+... ...+-.|.++++.+..+ ....+++-+
T Consensus 203 ~~~~~~l~~l~s~~e~~p~~~md~lgs~~~~~l~~i~e~~~~--------~~L~el~~~f~~~~n~q~~~a~~nvi~~~l 274 (411)
T KOG4035|consen 203 KYLKILLLMLFSDDEAFPLEHMDSLGSEFARFLFNIAEDFHK--------EDLLELCTNFSLATNQQQGSAPLNVIQKIL 274 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcCCHHHHHHHHHcCcccH--------HHHHHHHHHHHHHHhhhcccccHHHHHHHh
Confidence 1122233334332 2466677776655322 33455666777654222 122344555
Q ss_pred HhcCcHHHHHHH----Hc-CCCcchhhhhhHHHHHHHh--cChHHHHHHHHhcCCcchHHHHHHHHhc-cCChhHHHHHH
Q 002889 357 MNEGIFDIVTDA----LQ-SQDKKLVLTGTDILILFLN--QDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFL 428 (870)
Q Consensus 357 v~~GL~~vi~~~----L~-~~d~~ir~~atDILv~iie--hdP~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~ 428 (870)
.++---.+.... |. .+|+ +|.....||-.+++ -+|+.. ...+...=..|++++|+.+.. +.+.-+..-..
T Consensus 275 ~n~~~~kiFtE~Lll~LNR~~DP-lril~hkvl~lild~fg~pat~-~mFYtNDlkVLIDIliRel~ni~~gd~lr~~~l 352 (411)
T KOG4035|consen 275 ENPYSCKIFTEKLLLKLNREDDP-LRILKHKVLYLILDPFGEPATA-KMFYTNDLKVLIDILIRELINIDEGDKLRAIYL 352 (411)
T ss_pred cCCchHHHHHHHHHHHHccCCCh-HHHHHHHHHHHHHhhcCCcchH-hHhhhccHHHHHHHHHHHHhcCCcchhhHHHHH
Confidence 443322222222 22 4455 88888887776663 344432 223333334677888888765 33444556666
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHH
Q 002889 429 EILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVIT 465 (870)
Q Consensus 429 eaLk~LLDp~~m~~~e~d~FL~~FY~~-~~~~L~~pL~ 465 (870)
..++.|+-... ..+.+|.+ .+.+++..+.
T Consensus 353 ~ll~~llknt~--------~~k~~hrk~dl~kil~~i~ 382 (411)
T KOG4035|consen 353 FLLKFLLKNTL--------YKKHRHRKHDLNKILNRIS 382 (411)
T ss_pred HHHHHHHhccc--------hhhhcCCchhHHHHHHHHh
Confidence 77777764322 33445543 3455555554
No 74
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=30.15 E-value=6.9e+02 Score=28.17 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=41.9
Q ss_pred CCcHHhHHHHHHHHHHHHHhh--hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 321 TTLEESKKNLVHFLHEFCGLS--KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 321 ~~~~e~rrdlV~FL~E~c~ls--K~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.-++-|.....||+.++..+ .-++.+ ...|+ -+++.|.|+++|++..|...|.++|..+++
T Consensus 131 ~~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 131 EEYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 334678888888888887653 111111 11222 246788999999999999999888876654
No 75
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=30.04 E-value=1.9e+02 Score=25.03 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 002889 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 431 (870)
Q Consensus 362 ~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaL 431 (870)
++.+..+++++++.+|..++.-|..+ .+...+..|++.+-.+.+..++....++|
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i---------------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRI---------------GDPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---------------HHHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh---------------CCHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 56666777888888888776665543 01224456666666666777776665554
No 76
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=29.98 E-value=1.2e+02 Score=33.71 Aligned_cols=50 Identities=12% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCC
Q 002889 170 FFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPD 230 (870)
Q Consensus 170 YI~KLl~LF~~cEdle~~e~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VvG~LEYDPe 230 (870)
...+|-.|.+.|.+-..-+....+-.+||.++.. ++-. -.++.|||+||+
T Consensus 192 lsEnLekLl~ea~erS~~~~~~~~~~lvrklL~I---------isRP--ARLLEcLEFdPe 241 (282)
T PF08926_consen 192 LSENLEKLLQEAHERSESEEVAFVTQLVRKLLII---------ISRP--ARLLECLEFDPE 241 (282)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------HSS---------------
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH---------hcch--hhhhhhhccChH
Confidence 4567777888888887788899999999988742 1111 146679999998
No 77
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=29.88 E-value=83 Score=23.27 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=30.5
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
+..+...+.+..++.|+++.+.-++-.|+..+|.+.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 556777888999999999888899999999998864
No 78
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.66 E-value=4.1e+02 Score=25.91 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHH
Q 002889 334 LHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVK 413 (870)
Q Consensus 334 L~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~ 413 (870)
+-|+|.+..+-....|... .+|..-|++.++.+...|..+|=+|+.+-...++..+...+ +++.|++
T Consensus 21 il~icd~I~~~~~~~k~a~----------raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~---fl~~l~~ 87 (133)
T cd03561 21 NLELCDLINLKPNGPKEAA----------RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE---FLLELVK 87 (133)
T ss_pred HHHHHHHHhCCCCCHHHHH----------HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH---HHHHHHH
Q ss_pred HHhc--cCChhHHHHHHHHHHHh
Q 002889 414 GMIT--DFGEDMHCQFLEILRSL 434 (870)
Q Consensus 414 ~ll~--d~d~glk~Ql~eaLk~L 434 (870)
.+.. ..++-++..+.+.+..+
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHH
No 79
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=28.75 E-value=1.9e+02 Score=28.48 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002889 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (870)
Q Consensus 487 ~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~ 546 (870)
.+..+.-.|-=|..+|++|+. .|..+-.-+.=.+|..||...+.=++=-||.++-.++.
T Consensus 57 d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455667788888999999976 57777666677899999999999999999999888765
No 80
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=1.2e+03 Score=28.89 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=77.7
Q ss_pred HhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCC----CC------cHHhHHHHHHHHHHHHHhhhccChHhHHHHHH-
Q 002889 286 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSP----TT------LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFR- 354 (870)
Q Consensus 286 s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~----~~------~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~- 354 (870)
..++--+.||..|+..-+..+..|+..-=..+... .+ +...---.+.||+ +|+++. .+.+
T Consensus 355 lll~~~ll~n~~e~~~~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~Lk---S~SrSV------~~LRT 425 (743)
T COG5369 355 LLLTPELLFNMYELTAGLEENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLK---SMSRSV------TFLRT 425 (743)
T ss_pred hhcCHHHHHhHHHHhhhhhhhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHH---HhhHHH------HHHHh
Confidence 35777889999999998888877765322222111 11 1111112334443 233332 2333
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhh-hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 002889 355 DLMNEGIFDIVTDALQSQDKKLVLTG-TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (870)
Q Consensus 355 ~Lv~~GL~~vi~~~L~~~d~~ir~~a-tDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 433 (870)
.|.+..+-..+-.+|.+++-.|...+ .+|.--++...| +|+.+++ ..++++|+..+. .+|..++.--.=+||-
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn--L~~~fL~---~~iIdvl~~~v~-sKDdaLqans~wvlrH 499 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN--LGAGFLE---KSIIDVLVNLVM-SKDDALQANSEWVLRH 499 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccc--hHHHHHH---hhHHHHHHHHhh-cchhhhhhcchhhhhh
Confidence 36666777778888887665555433 366666777765 3665555 347888887554 5677777555556665
Q ss_pred hc
Q 002889 434 LL 435 (870)
Q Consensus 434 LL 435 (870)
|+
T Consensus 500 lm 501 (743)
T COG5369 500 LM 501 (743)
T ss_pred hh
Confidence 53
No 81
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.57 E-value=5.3e+02 Score=25.84 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCCh--hHHHHHHH
Q 002889 352 LFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE--DMHCQFLE 429 (870)
Q Consensus 352 lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~--glk~Ql~e 429 (870)
.|..+++..+.+.+-..+.+++..+-..+.-|+..++.+ .|.++..| =..++..++..++..... --|.-++|
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~----~~~~Lk~e-le~~l~~i~~~il~~~~~~~~~k~~~Le 139 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR----FRSHLKLE-LEVFLSHIILRILESDNSSLWQKELALE 139 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 344455555555555444445555555556666555522 34433322 233444555444432221 22334445
Q ss_pred HHHHhc
Q 002889 430 ILRSLL 435 (870)
Q Consensus 430 aLk~LL 435 (870)
+++.+.
T Consensus 140 ~l~~l~ 145 (168)
T PF12783_consen 140 ILRELC 145 (168)
T ss_pred HHHHHH
Confidence 555554
No 82
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=27.41 E-value=1.9e+02 Score=29.92 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=51.6
Q ss_pred HhhhcccCCCCCCc-cchh-HhhhhcCCceeeeecC---ChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHh
Q 002889 221 IIGSLEYDPDVPHV-QHHR-NFLKEHVVFKEAIPIR---DPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGN 295 (870)
Q Consensus 221 VvG~LEYDPe~p~~-~~HR-~fL~~~a~FKEVVPI~---d~~i~~KIHqtYRLqYLKDVVLpRiLDD~t~s~LnSlIffN 295 (870)
.-|||+.||.|-.. ..-| .++ ..+|. +|-. =..+..-+...+-+-|..|. .++.+|++++.-+.+.+...
T Consensus 3 a~GCL~CDp~v~eal~~L~~~~l--P~~~~--~~~~~~~~~rl~~~m~~~~~~~~~~~a-~~g~vd~~~L~~va~~~~~~ 77 (160)
T PF15005_consen 3 ARGCLQCDPSVVEALKSLRHDYL--PSHLH--VEGLQARAQRLLLEMEDFFFLPYAEDA-FMGVVDEDTLDKVAWSFKNQ 77 (160)
T ss_pred CCeeeeCCHHHHHHHHHHHHHhC--ccccC--cchHHHHHHHHHHHhhCccccccchhh-hhhhccHHHHHHHHHHHHHH
Confidence 45999999987753 1112 122 12222 1111 12333444556667787775 57889999998888755443
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhC
Q 002889 296 NAYVVSLLKDDSTFIQELFARLR 318 (870)
Q Consensus 296 qveIV~~Lq~d~~FL~eLF~~l~ 318 (870)
--.|-+.=-.++-||+|||..+.
T Consensus 78 lkrl~~s~~kg~~ll~EL~~~r~ 100 (160)
T PF15005_consen 78 LKRLTDSDLKGEPLLKELVWMRQ 100 (160)
T ss_pred HHHHhcCCcccchHHHHHHHHHH
Confidence 33333322224567777777554
No 83
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.59 E-value=4.5e+02 Score=25.78 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=51.2
Q ss_pred hHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhcc-ChHhHHHHHHHHHhcC
Q 002889 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-QMVQQLRLFRDLMNEG 360 (870)
Q Consensus 284 t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~L-Q~~~R~~lf~~Lv~~G 360 (870)
++.+|.+++-.--..+-..+. +..|+.+|...+.++...+.-|..++.++++--.--++- +.+.-...|..|...|
T Consensus 57 AL~lLe~~vkNcg~~f~~ev~-s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L~~~g 133 (133)
T smart00288 57 ALTLLDACVKNCGSKFHLEVA-SKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHHHCCHHHHHHHH-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCc
Confidence 345666655554455555554 578999999999887766657888888888876554543 2344457888887765
No 84
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.12 E-value=34 Score=36.57 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=36.8
Q ss_pred Cee-EEEEe-CCCCCceeccceEEEEEEeCCCcceeEEEEecCCC-cceeEeecCCCCcc
Q 002889 15 QRV-KVYRL-NDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDN-ETILLHRISPDDIY 71 (870)
Q Consensus 15 ~RV-KVY~L-~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~-~~LL~s~I~~~d~Y 71 (870)
.|+ |+|.. ++..+|..+|||.|-...-.......++.+.-.-+ ..+..+.|.+.--+
T Consensus 62 ~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~sn~~~~~~~~~ 121 (215)
T KOG0864|consen 62 QRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVCSNHFIGPSFKL 121 (215)
T ss_pred hhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhcccccccCcccc
Confidence 566 88888 45779999999999987655555556666655543 22333455554333
No 85
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.66 E-value=3.1e+02 Score=28.73 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=55.2
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcC-----Cc--------------chHHHHHHHHhccCChhH
Q 002889 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQE-----GI--------------PLLGLLVKGMITDFGEDM 423 (870)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe-----~~--------------~Ll~~Li~~ll~d~d~gl 423 (870)
..+.-++.+++.++|.+|...|..+++.. +.|+...+ .. .+-..|+..|..|.+..+
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~ 118 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGS----KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPV 118 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHcc----HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 45667788999999999999999999986 44544321 10 122345666778899999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 002889 424 HCQFLEILRSLLDSYTL 440 (870)
Q Consensus 424 k~Ql~eaLk~LLDp~~m 440 (870)
..|+..+|..|+.....
T Consensus 119 l~q~lK~la~Lv~~tPY 135 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPY 135 (182)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999999876554
No 86
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=25.45 E-value=3.1e+02 Score=25.83 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH-HHHHHHh
Q 002889 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNL-LRSYVVR 401 (870)
Q Consensus 362 ~~vi~~~L~~~d~~ir~~atDILv~iiehdP~l-vR~~i~~ 401 (870)
+--|.-||.|=.+.||..++.+|-.++++.|.. ++++-.+
T Consensus 13 ~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~k 53 (102)
T PF12333_consen 13 MLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVK 53 (102)
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHH
Confidence 445678888999999999999999999999998 6665444
No 87
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=25.42 E-value=1.5e+02 Score=35.83 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcCcHHHHHHH---HcCC---CcchhhhhhHHHHHHHhcChHHHHHHH
Q 002889 327 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQSQ---DKKLVLTGTDILILFLNQDPNLLRSYV 399 (870)
Q Consensus 327 rrdlV~FL~E~c~lsK~LQ-~~~R~~lf~~Lv~~GL~~vi~~~---L~~~---d~~ir~~atDILv~iiehdP~lvR~~i 399 (870)
..+++.+|.+.|.-+..-+ ...+..+.++|-+.|+-.++... +... ...+|.+|..-|-.+..+.|..+|..+
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 4456777777777554432 35667788999999954444444 4444 456889998888888999999999876
Q ss_pred Hh
Q 002889 400 VR 401 (870)
Q Consensus 400 ~~ 401 (870)
++
T Consensus 564 ~~ 565 (618)
T PF01347_consen 564 LP 565 (618)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 88
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=24.94 E-value=5.1e+02 Score=31.26 Aligned_cols=88 Identities=23% Similarity=0.200 Sum_probs=62.3
Q ss_pred HHHHHhhCC-----HH----HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 002889 298 YVVSLLKDD-----ST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 368 (870)
Q Consensus 298 eIV~~Lq~d-----~~----FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~ 368 (870)
+|..+++++ +. .|-.+|..+.+.. +.-.|+.+++-|+++|.- | ...| ..=.+.-+-++|+-+
T Consensus 310 el~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~----Q---~~~l-~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 310 ELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTN----Q---PARL-FDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHh----c---hHhh-hchHHHHHHHHHHHH
Confidence 577788876 32 3445667776533 446788899999999963 1 1222 333455567778888
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChHH
Q 002889 369 LQSQDKKLVLTGTDILILFLNQDPNL 394 (870)
Q Consensus 369 L~~~d~~ir~~atDILv~iiehdP~l 394 (870)
-...|..++.++-|-+..+-.|+|..
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchh
Confidence 78888899999999999999999963
No 89
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=24.52 E-value=51 Score=34.34 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=56.6
Q ss_pred HHHHHHhhcChh---hHHHH---HHHHhcchHHHHHHHHHHHHHHh--------------------cCChhhHHHHHHHH
Q 002889 144 LILKTVTESGIA---DQMRL---TELILNDQDFFRKLMDLFRICED--------------------LENIDGLHMIFKII 197 (870)
Q Consensus 144 eIl~~i~~~s~~---~rerl---a~~Il~~~~YI~KLl~LF~~cEd--------------------le~~e~Lh~L~~Iv 197 (870)
+|.+++..++.. .|-++ .+-++.++=.++.|+.-.+..|- -.+.....-+-...
T Consensus 68 ~I~E~I~Ks~~~DiDKR~KL~~NIKs~~~NPF~i~GL~~SLE~~~~~~~~~YSSVMILGef~iin~~~~~a~FeFi~~LL 147 (244)
T PF06334_consen 68 EIFEIIQKSNSMDIDKRIKLMHNIKSMMINPFMIKGLMESLENFDPDNKMSYSSVMILGEFNIINISDNEATFEFINSLL 147 (244)
T ss_pred HHHHHHHhccccCHHHHHHHHHhhHHHhcCHHHHHHHHHHHhccCCCCCcceeeeEEeeccceEeccCchhHHHHHHHHH
Confidence 566666544322 34444 22344556666666665444332 22344556678889
Q ss_pred HHHHhcCCh--hhHhhhhcchhHhHHhhhcccC
Q 002889 198 KGIILLNSP--QIFEKIFGDELMMDIIGSLEYD 228 (870)
Q Consensus 198 K~IilLNd~--~IiE~llsDe~i~~VvG~LEYD 228 (870)
|++++||.. .|+|+..+.+....-+.||||=
T Consensus 148 KSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEYI 180 (244)
T PF06334_consen 148 KSLLLLNTRQLKLLEYAINNDLLYEHINALEYI 180 (244)
T ss_pred HHHHhhcchhhhHHHHhhhhhHHHHHHHHHHHH
Confidence 999999976 6899999999999999999994
No 90
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.23 E-value=5.1e+02 Score=25.44 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=49.1
Q ss_pred hHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHH--hHHHHHHHHHHHHHhhhccChHh-HHHHHHHHHhcC
Q 002889 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE--SKKNLVHFLHEFCGLSKSLQMVQ-QLRLFRDLMNEG 360 (870)
Q Consensus 284 t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e--~rrdlV~FL~E~c~lsK~LQ~~~-R~~lf~~Lv~~G 360 (870)
++.+|.+++-.-...+-..+. +..|+.+|...+.++..... -|..++.+|++.-.-.++..... =..+|+.|-..|
T Consensus 62 aL~lld~lvkNcg~~f~~ev~-~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 62 ALTLLDALVKNCGPRFHREVA-SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHSHHHHHHHHT-SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHh-HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHCc
Confidence 455666665544444444444 46899999998887776654 67788888887655444433222 246788887776
No 91
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=24.05 E-value=4.4e+02 Score=29.25 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhh-----HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q 002889 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNN-----VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNL 561 (870)
Q Consensus 487 ~~~ll~~l~ELL~FcV~~H~yriK~~il~~n-----ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nL 561 (870)
..+...+++=++.=++..++.+.+.|.-... ...-.++++...+.+.++.|.+++-.++.-.+..-.... ...
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~ 147 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV--KEA 147 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH--HHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH--HHH
Confidence 3455666677777778888888876655222 456667788899999999999999999988776544422 455
Q ss_pred hHHHHHHHHHhC--CCCcchHHHHHHHHHHHHh
Q 002889 562 LKPIVDAFVANG--NRYNLLNSAVLELFEYIRK 592 (870)
Q Consensus 562 f~PIl~~f~~ng--~R~NLLnSA~LELfefIr~ 592 (870)
+.++++.+.... +..|+...|+.-|-+..|.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 677777765422 2234444455444444443
No 92
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=23.91 E-value=4e+02 Score=24.81 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
.-+++.+..+.||.. .-|-.++..|++++.--. +...--.+++.++...|+++|+-|-..|+-.|..+
T Consensus 3 ~~~~~al~~L~dp~~--PvRa~gL~~L~~Li~~~~----------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~L 70 (92)
T PF10363_consen 3 ETLQEALSDLNDPLP--PVRAHGLVLLRKLIESKS----------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAAL 70 (92)
T ss_pred HHHHHHHHHccCCCc--chHHHHHHHHHHHHHcCC----------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 346777778888775 467788888888765322 11222346778888899999999999999999999
Q ss_pred HhcChHHH
Q 002889 388 LNQDPNLL 395 (870)
Q Consensus 388 iehdP~lv 395 (870)
.+.+|.-+
T Consensus 71 a~~~p~~v 78 (92)
T PF10363_consen 71 ADRHPDEV 78 (92)
T ss_pred HHHChHHH
Confidence 99999843
No 93
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=23.46 E-value=33 Score=37.16 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=30.5
Q ss_pred HhcCChHHHHHHHHHhCC------CCcchHHHHHHHHHHHHhhCh----------HHHHHHHHHHhHhhccccc
Q 002889 557 VKNNLLKPIVDAFVANGN------RYNLLNSAVLELFEYIRKENL----------KSLVKYIVDSFWNQLVNFE 614 (870)
Q Consensus 557 Ik~nLf~PIl~~f~~ng~------R~NLLnSA~LELfefIr~eNi----------k~Li~hlVe~y~~~l~~i~ 614 (870)
+..|+|.| +-| ++|+ .||= +++.+++.+|||.-|| .+|+.-|| |-.+++++.
T Consensus 183 ~~~n~fp~--kn~-~~gpnv~~~P~y~~-ypT~~~I~n~vr~~ni~~v~L~l~n~~sL~dvLv--yDgKvEK~~ 250 (301)
T COG5111 183 LEKNLFPR--KNF-EEGPNVFYAPKYED-YPTLEDIMNYVRNVNILSVPLRLDNLESLADVLV--YDGKVEKLH 250 (301)
T ss_pred HHhccCCc--cch-hcCCccccCCccCC-CccHHHHHHHHHhceeeeccccHHHHHHHhHhee--ecCeeeeec
Confidence 45667766 222 2333 3332 6789999999998654 45544444 445555543
No 94
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=22.90 E-value=4e+02 Score=29.66 Aligned_cols=77 Identities=17% Similarity=0.420 Sum_probs=55.8
Q ss_pred HHHHHHHHH--HHhhccchhhhHHhhhhHHHHHHHhhh-----ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHH
Q 002889 492 SNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR-----RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 564 (870)
Q Consensus 492 ~~l~ELL~F--cV~~H~yriK~~il~~nll~rVl~Ll~-----~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~P 564 (870)
..+|-.|+- ||-.|+- .|..|++-+++-..--.++ +..-+|+|++|-.+.++|..+|.-...|+....++..
T Consensus 65 nRVcnaLaLlQ~vAshpe-tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPE-TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH-TT-THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcChH-HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 445555443 6777775 5668888888755544332 2246999999999999999999999999999999988
Q ss_pred HHHHH
Q 002889 565 IVDAF 569 (870)
Q Consensus 565 Il~~f 569 (870)
-+..+
T Consensus 144 cLr~m 148 (262)
T PF04078_consen 144 CLRIM 148 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 95
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=22.89 E-value=2e+02 Score=24.01 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHH----HhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 002889 298 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFC----GLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 369 (870)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c----~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L 369 (870)
++..+++++.+|++-||+.=.++. =+..+...+++.. .....-... +...+.+++-.|++.+|..=|
T Consensus 6 ~i~~~i~~n~~~~~~ll~~~~~~~----f~~~l~~~~~~~~~~~~~~~~~~~~~-~~~y~~~f~~sg~igvi~~Wl 76 (77)
T PF14278_consen 6 EIFEYIYENRDFYKILLSPNGDPN----FQERLKELIKEWITEYINENSPDNDD-PEEYLISFIVSGIIGVIQWWL 76 (77)
T ss_pred HHHHHHHHhHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHHHh
Confidence 466677777766666665322222 2222333333332 111111111 122778889999999887543
No 96
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.44 E-value=46 Score=33.36 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.6
Q ss_pred EEecCCCccccccccccCccc
Q 002889 79 ISWRDPEYSTELALSFQEPTG 99 (870)
Q Consensus 79 IvWte~~~g~DlALSFQe~~G 99 (870)
++|+||. |+|.||.|.-.++
T Consensus 66 vsWtEPT-GTdVaL~f~pne~ 85 (175)
T COG3479 66 VSWTEPT-GTDVALTFNPNEY 85 (175)
T ss_pred EEeeCCC-CceEEEEeccccc
Confidence 6899997 9999999977665
No 97
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=22.22 E-value=1.8e+02 Score=22.23 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=31.3
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
+..++..+.+...+.||++.+.-++-.|+..++.+-
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999999888763
No 98
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=22.12 E-value=8e+02 Score=24.54 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++..+..++....+.+--.+ ++|.+-++=....|.+ +.+|..-|++.++.+...|..+|-+|+.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~il----eicD~In~~~~~~k~a----------~rai~krl~~~n~~v~l~AL~LLe~~vk 67 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQ----AFCEQINKEPEGPQLA----------VRLLAHKIQSPQEKEALQALTVLEACMK 67 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHH----HHHHHHHcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHh-----ccCChhHHHHHHHHHHHh
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMI-----TDFGEDMHCQFLEILRSL 434 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll-----~d~d~glk~Ql~eaLk~L 434 (870)
.--..++.-+.+.+ +++.|++++- ...+..++..+.+.+..+
T Consensus 68 NCG~~fh~evas~~---Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 68 NCGERFHSEVGKFR---FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HcCHHHHHHHHhHH---HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
No 99
>PF05505 Ebola_NP: Ebola nucleoprotein; InterPro: IPR008609 This family consists of Ebola virus sp., Lake Victoria marburgvirus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus [].; GO: 0019074 viral RNA genome packaging, 0019013 viral nucleocapsid
Probab=22.02 E-value=1e+03 Score=29.20 Aligned_cols=21 Identities=43% Similarity=0.764 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 002889 698 RSGGLVDYDDDEDDEDYRPPP 718 (870)
Q Consensus 698 ~~~~LVdY~ddddd~~~~~~~ 718 (870)
.++.||=++-||||||.+|.|
T Consensus 461 ~~ddl~Lfdlddd~dd~~~~p 481 (717)
T PF05505_consen 461 APDDLVLFDLDDDDDDNKPVP 481 (717)
T ss_pred CCCCeeeeccccCCcccccCc
Confidence 446788888888888888888
No 100
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=21.85 E-value=2e+03 Score=29.18 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=27.7
Q ss_pred hheeeeeeehhcccccchhhHHhHHHHHHHhHH--HHHHHhh
Q 002889 265 TYRVGYLKDVVLARVLDEATVANLNSIIHGNNA--YVVSLLK 304 (870)
Q Consensus 265 tYRLqYLKDVVLpRiLDD~t~s~LnSlIffNqv--eIV~~Lq 304 (870)
.++.-|+.|.+||++||.-....++-.+=.+-+ +|+..++
T Consensus 573 ~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~ 614 (1133)
T KOG1943|consen 573 LTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR 614 (1133)
T ss_pred HhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh
Confidence 357889999999999998776666655444433 5555443
No 101
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.52 E-value=3e+02 Score=27.58 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002889 491 LSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (870)
Q Consensus 491 l~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~ 570 (870)
+..|+++|..+....... ..+..+...++||||+++..... ....+-..+.+..|...+
T Consensus 109 ~~~L~~~L~~~~~~~~~~-------------------~~~~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L- 167 (187)
T PF06371_consen 109 LEALLNVLSKLNKKKEKS-------------------EEDIDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSL- 167 (187)
T ss_dssp HHHHHHHHHHHHTHHCTC-------------------TTCHHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--
T ss_pred HHHHHHHHHHhhhhhhhc-------------------chhHHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHH-
Q ss_pred HhCCCCcchHHHHHHHHHHH
Q 002889 571 ANGNRYNLLNSAVLELFEYI 590 (870)
Q Consensus 571 ~ng~R~NLLnSA~LELfefI 590 (870)
.+.+--+--.++|++-+|
T Consensus 168 --~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 168 --DSPNIKTRKLALEILAAL 185 (187)
T ss_dssp ---TTSHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHH
No 102
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=21.19 E-value=3e+02 Score=34.77 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=58.2
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002889 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (870)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfef 589 (870)
|.-+...+++.++++|+.+++.-++-.|+|.+-++= -|.-....|++.|++.+++..+... |.- ..|+-++..
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS--fd~~~R~~mV~~GlIPkLv~LL~d~----~~~-~val~iLy~ 396 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS--FDPELRSQMVSLGLIPKLVELLKDP----NFR-EVALKILYN 396 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC--cCHHHHHHHHHCCCcHHHHHHhCCC----chH-HHHHHHHHH
Confidence 667788899999999999999999999999998853 3444588999999999999888532 222 346666666
Q ss_pred HH
Q 002889 590 IR 591 (870)
Q Consensus 590 Ir 591 (870)
|.
T Consensus 397 LS 398 (708)
T PF05804_consen 397 LS 398 (708)
T ss_pred hc
Confidence 64
No 103
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=21.04 E-value=4.6e+02 Score=26.66 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCc-------HHHHHHHHcCCCcchhhh
Q 002889 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGI-------FDIVTDALQSQDKKLVLT 379 (870)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL-------~~vi~~~L~~~d~~ir~~ 379 (870)
+.+++.+++.|+|++. .-|+.++. .+..|+..|. |.-+-.++.++|+.||..
T Consensus 24 e~~~~~l~~~L~D~~~--~VR~~al~-------------------~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDP--LVRKTALL-------------------VLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HhHHHHHHHHHCCCCH--HHHHHHHH-------------------HHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Q ss_pred hhHHHHHHHhc-ChHHHHHHHHh
Q 002889 380 GTDILILFLNQ-DPNLLRSYVVR 401 (870)
Q Consensus 380 atDILv~iieh-dP~lvR~~i~~ 401 (870)
|.-.+..+... +|+.+.+.+..
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~~e 105 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNFPE 105 (178)
T ss_pred HHHHHHHHHHhccchHHHHHHHH
No 104
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=1.5e+03 Score=26.88 Aligned_cols=182 Identities=19% Similarity=0.236 Sum_probs=112.8
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 002889 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (870)
Q Consensus 354 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 433 (870)
+.|+..|=++++-.+++..|..++--+|--+..| -.|-. -|. ++-|.+..|...|+++| .+.++-+|.|..-||+.
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~~-~Rk-~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDRR-ARK-ILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhHH-HHH-HHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 4578899999999999999988876655443332 22221 344 34455667888888876 56788899999999998
Q ss_pred hcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhh--
Q 002889 434 LLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC-- 511 (870)
Q Consensus 434 LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~-- 511 (870)
|---+.. .+..--...++-|++-|.+.. -+-++ + =-||+++-+.+--+
T Consensus 278 lasdt~Y-------q~eiv~ag~lP~lv~Llqs~~------------------~plil----a-sVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 278 LASDTEY-------QREIVEAGSLPLLVELLQSPM------------------GPLIL----A-SVACIRNISIHPLNEV 327 (550)
T ss_pred hcccchh-------hhHHHhcCCchHHHHHHhCcc------------------hhHHH----H-HHHHHhhcccccCccc
Confidence 8422211 111112234555555553210 00111 1 13788765544322
Q ss_pred HHhhhhHHHHHHHhhhccchh-hHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002889 512 NFLLNNVVDKVLLLTRRREKY-LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (870)
Q Consensus 512 ~il~~nll~rVl~Ll~~~~K~-L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~ 570 (870)
.|.....++-.++|+++++.- .++.|+--+|.+-+.- +.-.+-|+..+-..-...+++
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHh
Confidence 244445667788999999865 8999999999987642 334556677777766665554
No 105
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=1.6e+03 Score=29.36 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=50.9
Q ss_pred hcCcHHHHHHHHcCC-CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 358 NEGIFDIVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 358 ~~GL~~vi~~~L~~~-d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
-.-+.++|--.|+|+ +..|...||=-|.+++|.-|..+- +++... -+-+|+.-|++=.-..++.|..+||+.|=
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a-~vV~~~---aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA-IVVDEH---AIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh-eeeccc---chHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 344677888888876 467788888888999998887542 333321 23345555555556678999999999884
Done!