Query 002889
Match_columns 870
No_of_seqs 197 out of 263
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rrp_B Nuclear pore complex pr 98.8 1.3E-08 4.3E-13 98.1 9.5 98 15-112 27-133 (134)
2 1xke_A RAN-binding protein 2; 97.9 3.8E-05 1.3E-09 73.5 9.9 100 15-114 13-121 (130)
3 3n7c_A ABR034WP; nuclear pore 97.9 4.2E-05 1.4E-09 73.3 9.5 100 15-114 16-122 (130)
4 4hxt_A De novo protein OR329; 97.9 0.0027 9.4E-08 63.0 22.9 218 310-570 4-222 (252)
5 2ec1_A Nucleoporin 50 kDa; ran 97.8 7.6E-05 2.6E-09 71.1 10.6 96 15-112 18-124 (125)
6 1k5d_B RAN-specific GTPase-act 97.8 8.4E-05 2.9E-09 76.1 10.2 100 15-114 51-162 (201)
7 4hat_B RAN-specific GTPase-act 97.7 0.00012 4.3E-09 70.9 9.8 99 15-113 28-136 (140)
8 3m1i_B RAN-specific GTPase-act 97.7 0.00016 5.5E-09 73.4 10.3 99 15-113 79-187 (191)
9 1xqr_A HSPBP1 protein; armadil 97.7 0.0088 3E-07 64.2 24.5 203 306-547 26-239 (296)
10 2crf_A RAN binding protein 3; 97.6 0.00017 5.8E-09 70.7 9.1 92 15-107 32-132 (150)
11 2y8g_A Ranbp3-B, RAN-binding p 97.5 0.0002 6.9E-09 69.2 8.8 91 15-106 20-119 (138)
12 3tpo_A Importin subunit alpha- 97.4 0.065 2.2E-06 60.9 29.1 241 309-591 205-448 (529)
13 4db8_A Armadillo-repeat protei 97.4 0.023 8E-07 56.9 21.7 221 308-571 12-233 (252)
14 2jdq_A Importin alpha-1 subuni 97.3 0.033 1.1E-06 60.3 23.8 224 308-571 64-287 (450)
15 4hxt_A De novo protein OR329; 97.3 0.044 1.5E-06 54.2 22.1 202 308-551 44-246 (252)
16 4b8j_A Importin subunit alpha- 97.2 0.075 2.6E-06 59.7 25.8 234 309-584 118-351 (528)
17 1wa5_B Importin alpha subunit; 97.1 0.071 2.4E-06 60.1 24.7 237 308-590 215-455 (530)
18 4b8j_A Importin subunit alpha- 97.1 0.25 8.5E-06 55.4 29.0 238 308-591 160-400 (528)
19 1wa5_B Importin alpha subunit; 97.0 0.077 2.6E-06 59.8 22.9 222 309-571 131-352 (530)
20 1qc6_A EVH1 domain from ENA/VA 96.9 0.0039 1.3E-07 59.5 9.6 98 15-114 9-112 (130)
21 4db6_A Armadillo repeat protei 96.7 0.23 8E-06 48.2 21.3 194 310-545 14-208 (210)
22 3tpo_A Importin subunit alpha- 96.6 0.072 2.5E-06 60.6 19.2 186 354-570 156-345 (529)
23 3ul1_B Importin subunit alpha- 96.6 0.31 1.1E-05 55.3 24.1 242 309-592 186-430 (510)
24 4db8_A Armadillo-repeat protei 96.5 0.31 1.1E-05 48.6 21.5 196 308-545 54-250 (252)
25 2jdq_A Importin alpha-1 subuni 96.5 0.5 1.7E-05 51.0 23.9 202 308-550 192-394 (450)
26 4db6_A Armadillo repeat protei 96.3 0.4 1.4E-05 46.5 20.0 183 355-570 7-190 (210)
27 1ddw_A GLGF-domain protein hom 96.3 0.016 5.3E-07 54.9 9.3 99 14-114 8-110 (120)
28 1evh_A WH1 domain, protein (ME 96.3 0.018 6.1E-07 53.7 9.6 95 14-110 8-107 (112)
29 1egx_A VAsp, vasodilator-stimu 96.1 0.021 7.2E-07 53.5 9.4 96 14-111 8-110 (115)
30 1jdh_A Beta-catenin; beta-cate 96.0 2 7E-05 47.4 26.3 235 308-587 101-335 (529)
31 3ul1_B Importin subunit alpha- 96.0 0.12 4E-06 58.7 16.5 185 354-569 137-325 (510)
32 1i2h_A PSD-ZIP45(homer-1C/VESL 95.8 0.048 1.6E-06 54.4 10.5 104 8-113 7-114 (168)
33 2z6h_A Catenin beta-1, beta-ca 95.7 0.88 3E-05 52.8 22.7 237 309-589 225-484 (644)
34 2z6h_A Catenin beta-1, beta-ca 95.5 2.5 8.7E-05 48.9 25.5 236 308-588 98-333 (644)
35 4fdd_A Transportin-1; heat rep 95.4 2.5 8.7E-05 50.4 25.8 218 306-552 126-394 (852)
36 4fdd_A Transportin-1; heat rep 95.3 2.9 9.8E-05 50.0 25.8 210 301-547 38-286 (852)
37 2z6g_A B-catenin; FULL-length, 94.8 6.6 0.00023 47.0 26.8 257 305-584 189-465 (780)
38 2jp2_A Spred-2, sprouty-relate 94.4 0.2 6.7E-06 47.7 10.0 95 14-110 17-120 (126)
39 1jdh_A Beta-catenin; beta-cate 94.2 1.5 5.2E-05 48.4 18.3 184 356-572 13-197 (529)
40 2z6g_A B-catenin; FULL-length, 93.8 4.5 0.00015 48.5 22.5 212 310-571 117-329 (780)
41 1xod_A Spred1; sprouty, EVH1, 93.8 0.23 8E-06 46.6 9.0 97 13-111 7-112 (118)
42 3b2a_A TON_1937, putative unch 93.7 1.2 3.9E-05 47.1 14.8 151 358-548 31-181 (265)
43 4gmo_A Putative uncharacterize 93.7 1.1 3.8E-05 53.0 16.7 191 354-560 29-227 (684)
44 1ibr_B P95, importin beta-1 su 93.5 6.6 0.00022 42.1 21.2 210 307-547 34-289 (462)
45 3now_A UNC-45 protein, SD10334 93.0 5.3 0.00018 48.7 21.3 245 305-583 418-686 (810)
46 2qk2_A LP04448P; mini spindles 92.8 4.5 0.00015 40.6 17.6 193 313-556 20-216 (242)
47 1ibr_B P95, importin beta-1 su 92.7 1.7 5.8E-05 46.8 15.1 210 308-547 172-396 (462)
48 2ifs_A N-WAsp, wiskott-aldrich 92.3 0.61 2.1E-05 46.5 10.0 95 17-113 65-159 (169)
49 1mke_A WIP - N-WAsp, fusion pr 92.3 0.62 2.1E-05 45.7 9.8 95 17-113 48-142 (152)
50 2bpt_A Importin beta-1 subunit 92.3 9.5 0.00032 44.7 21.9 242 307-590 38-293 (861)
51 1qgr_A Protein (importin beta 92.0 23 0.0008 41.5 25.0 230 308-569 172-417 (876)
52 1xqr_A HSPBP1 protein; armadil 91.7 5.2 0.00018 42.7 17.2 183 376-592 56-238 (296)
53 1w63_A Adapter-related protein 91.4 15 0.00051 42.7 22.1 175 362-611 315-493 (618)
54 3now_A UNC-45 protein, SD10334 91.3 6.8 0.00023 47.7 19.5 200 309-591 581-781 (810)
55 1w63_A Adapter-related protein 91.2 24 0.00081 41.0 23.5 211 360-594 142-398 (618)
56 2bpt_A Importin beta-1 subunit 90.8 30 0.001 40.5 24.8 206 361-590 455-666 (861)
57 1qgr_A Protein (importin beta 90.7 18 0.0006 42.5 22.0 239 307-590 34-286 (876)
58 3nmw_A APC variant protein; AR 90.2 8.1 0.00028 42.1 17.2 212 323-570 97-315 (354)
59 3opb_A SWI5-dependent HO expre 89.7 15 0.0005 44.7 20.1 263 301-590 369-727 (778)
60 3nmz_A APC variant protein; pr 89.1 19 0.00066 40.7 19.8 211 324-570 214-431 (458)
61 2vgl_A Adaptor protein complex 88.9 3.1 0.00011 48.7 13.5 68 360-435 146-215 (621)
62 3grl_A General vesicular trans 87.7 14 0.00048 43.9 17.8 106 489-595 137-244 (651)
63 1xm9_A Plakophilin 1; armadill 86.4 33 0.0011 38.0 19.4 208 310-545 4-219 (457)
64 3nmw_A APC variant protein; AR 84.4 17 0.00057 39.7 15.4 227 324-590 46-291 (354)
65 2qk2_A LP04448P; mini spindles 83.8 34 0.0012 34.1 16.4 162 367-569 22-185 (242)
66 3nmz_A APC variant protein; pr 83.6 25 0.00084 39.9 16.8 205 355-590 184-407 (458)
67 3grl_A General vesicular trans 81.2 61 0.0021 38.5 19.2 232 285-550 143-398 (651)
68 3fga_B Serine/threonine-protei 79.9 4.9 0.00017 45.1 9.1 248 137-438 96-368 (403)
69 3ltm_A Alpha-REP4; protein eng 78.7 39 0.0013 32.5 14.3 78 305-384 16-105 (211)
70 2npp_B PP2A, B subunit, serine 78.3 6 0.00021 45.0 9.3 72 167-242 160-248 (449)
71 1xm9_A Plakophilin 1; armadill 77.7 81 0.0028 34.9 18.3 176 362-571 4-196 (457)
72 1u6g_C TIP120 protein, CAND1; 77.2 83 0.0028 39.1 20.0 219 307-572 5-225 (1230)
73 3l6x_A Catenin delta-1; cateni 74.8 56 0.0019 38.3 16.5 159 408-592 310-477 (584)
74 3syx_A Sprouty-related, EVH1 d 73.4 9.5 0.00033 36.5 7.8 95 15-111 16-119 (130)
75 2qk1_A Protein STU2; STU2P, XM 72.6 51 0.0017 33.7 13.9 184 323-545 29-219 (249)
76 2vgl_A Adaptor protein complex 72.0 60 0.0021 37.8 16.0 67 364-439 333-401 (621)
77 2vgl_B AP-2 complex subunit be 67.9 1.7E+02 0.0059 33.4 21.6 84 346-437 100-190 (591)
78 2lyd_A Decapping protein 1; DC 67.8 20 0.00068 34.3 8.8 94 15-112 36-132 (134)
79 1u6g_C TIP120 protein, CAND1; 60.2 3.2E+02 0.011 33.8 22.3 271 308-603 475-780 (1230)
80 3tt9_A Plakophilin-2; cell adh 59.6 1.2E+02 0.0042 31.0 13.7 114 310-435 10-123 (233)
81 2of3_A ZYG-9; multifunctional 59.2 1.8E+02 0.0061 30.6 15.0 147 369-545 55-235 (266)
82 3ltj_A Alpharep-4; protein eng 55.9 1.4E+02 0.0047 28.3 14.9 25 361-385 77-101 (201)
83 2qkl_A DCP1 protein, SPBC3B9.2 55.8 43 0.0015 31.7 8.6 90 15-110 31-124 (127)
84 1wa5_C Importin alpha RE-expor 51.8 3.9E+02 0.013 32.3 22.0 90 299-397 26-127 (960)
85 2vgl_B AP-2 complex subunit be 51.2 3.2E+02 0.011 31.1 18.5 69 310-394 15-83 (591)
86 2qk1_A Protein STU2; STU2P, XM 50.5 43 0.0015 34.3 8.4 76 307-389 145-220 (249)
87 3a6p_A Exportin-5; exportin-5, 49.3 2.2E+02 0.0076 35.8 16.2 178 305-504 131-332 (1204)
88 2x19_B Importin-13; nuclear tr 48.4 4.2E+02 0.014 31.6 21.9 322 257-610 81-454 (963)
89 1b3u_A Protein (protein phosph 47.5 3.2E+02 0.011 29.9 21.1 105 309-435 165-270 (588)
90 2jak_A Serine/threonine-protei 46.3 2E+02 0.0067 32.2 13.3 84 298-391 282-374 (392)
91 3m1i_C Exportin-1; heat repeat 42.9 1E+02 0.0035 37.8 11.5 65 318-390 812-879 (1049)
92 3ltm_A Alpha-REP4; protein eng 42.7 2.3E+02 0.0077 26.9 16.4 44 343-386 30-76 (211)
93 1oyz_A Hypothetical protein YI 41.2 2.8E+02 0.0096 27.6 12.9 20 361-380 129-148 (280)
94 3tjz_B Coatomer subunit gamma; 40.5 1.3E+02 0.0044 33.0 10.7 64 361-434 140-203 (355)
95 3tt9_A Plakophilin-2; cell adh 38.5 2.7E+02 0.0094 28.4 12.2 89 507-597 42-130 (233)
96 4ffb_C Protein STU2; tubulin f 37.6 1.8E+02 0.0063 29.5 10.9 192 315-544 16-210 (278)
97 1upk_A MO25 protein; transfera 33.2 5.2E+02 0.018 28.3 17.6 196 345-572 63-266 (341)
98 1b3u_A Protein (protein phosph 31.5 5.4E+02 0.019 28.0 20.5 189 324-569 101-290 (588)
99 1x5b_A Signal transducing adap 29.8 2.5E+02 0.0086 27.2 9.8 110 310-436 16-125 (163)
100 3gs3_A Symplekin, LD45768P; he 29.1 3.6E+02 0.012 28.1 11.4 62 308-384 53-114 (257)
101 2jby_A M11L protein; apoptosis 29.0 82 0.0028 29.9 5.7 97 315-418 24-128 (145)
102 1dvp_A HRS, hepatocyte growth 28.5 2.5E+02 0.0087 28.2 9.9 110 310-436 6-115 (220)
103 1juq_A ADP-ribosylation factor 28.4 3.7E+02 0.013 26.2 10.7 110 310-436 14-128 (171)
104 2fv2_A RCD1 required for cell 27.0 4.4E+02 0.015 28.0 11.4 77 492-569 71-154 (268)
105 3zyq_A Hepatocyte growth facto 26.6 2.5E+02 0.0086 28.5 9.5 111 309-436 8-118 (226)
106 3dad_A FH1/FH2 domain-containi 25.2 5.6E+02 0.019 28.0 12.3 153 301-466 144-315 (339)
107 3l6x_A Catenin delta-1; cateni 23.5 2.1E+02 0.0071 33.5 9.1 96 507-603 80-184 (584)
108 3ldz_A STAM-1, signal transduc 23.2 3.6E+02 0.012 25.3 9.2 106 311-434 7-112 (140)
109 3g2s_A C-terminal fragment of 22.9 5E+02 0.017 24.8 11.0 110 310-436 12-126 (149)
110 1mhq_A ADP-ribosylation factor 22.6 3.8E+02 0.013 25.5 9.3 108 311-435 3-115 (148)
111 2x1g_F Cadmus; transport prote 21.9 1.1E+03 0.036 28.2 25.2 272 307-612 228-595 (971)
112 3vld_A DNA mismatch repair pro 21.7 9.6E+02 0.033 27.6 18.2 120 363-520 119-245 (500)
113 3o2t_A Symplekin; heat repeat, 21.5 5.9E+02 0.02 28.2 11.8 71 308-396 63-133 (386)
114 3eg5_B Protein diaphanous homo 20.2 6.7E+02 0.023 27.4 12.0 132 324-464 134-273 (383)
No 1
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=98.80 E-value=1.3e-08 Score=98.10 Aligned_cols=98 Identities=22% Similarity=0.400 Sum_probs=84.5
Q ss_pred CeeEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEecCC-----C-
Q 002889 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP-----E- 85 (870)
Q Consensus 15 ~RVKVY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~-----~- 85 (870)
.|+|||+++ ++++|.++|+|.+.+-.........|++|.+.....+|.+.|.++-.|+.+. +..++|+-. +
T Consensus 27 ~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 106 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELP 106 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSC
T ss_pred EEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCC
Confidence 699999996 4679999999999987666667899999999999999999999999999864 689999732 1
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 002889 86 YSTELALSFQEPTGCSYIWDNICNVQR 112 (870)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~I~~VQ~ 112 (870)
....+||.|..++.|+++|+.|.+.|.
T Consensus 107 k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 107 KPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 125799999999999999999999874
No 2
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=97.91 E-value=3.8e-05 Score=73.53 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=83.4
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEec-----CCC-
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPE- 85 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt-----e~~- 85 (870)
.|.|||++.+ ++.|.++|+|-+.+-.........|++|.+.....+|.+.|.++-.|+... +.-++|+ |.+
T Consensus 13 ~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 92 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDA 92 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCS
T ss_pred EEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCCCC
Confidence 5899999953 578999999999987665567799999999999999999999999998764 6678898 322
Q ss_pred ccccccccccCccchhHHHHHHHHHhhcc
Q 002889 86 YSTELALSFQEPTGCSYIWDNICNVQRNL 114 (870)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (870)
.-.-+||.|-.++-++++.+.|.+.|...
T Consensus 93 ~~~~~~irfks~e~a~~f~~~~ee~k~~~ 121 (130)
T 1xke_A 93 KLEQLAAKFKTPELAEEFKQKFEECQRLL 121 (130)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 11358999999999999999999999754
No 3
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=97.88 E-value=4.2e-05 Score=73.35 Aligned_cols=100 Identities=9% Similarity=0.225 Sum_probs=80.2
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeC-CCcceeEEEEecCCCcceeEeecCCCCcccccc---CeEEEecCCCc--c
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSME-RSEELCLFVIDEEDNETILLHRISPDDIYRKQE---DTIISWRDPEY--S 87 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e-~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq---eTLIvWte~~~--g 87 (870)
.|+|||++.. ++.|.++|+|-+.+-... ......|++|.+.....+|.+.|.++-.|++.. .+.+.|..++. -
T Consensus 16 ~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~ 95 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKL 95 (130)
T ss_dssp EEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETTEE
T ss_pred EEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCCce
Confidence 5899999964 468999999999985433 245689999999988899999999999998875 68888873321 2
Q ss_pred ccccccccCccchhHHHHHHHHHhhcc
Q 002889 88 TELALSFQEPTGCSYIWDNICNVQRNL 114 (870)
Q Consensus 88 ~DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (870)
.-+||.|-.++-++++-+.|.+.|...
T Consensus 96 ~~~~lrfks~e~A~~f~~~iee~~~~~ 122 (130)
T 3n7c_A 96 ETFIIKVKQKADGRRLVGAVADAQQAM 122 (130)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 469999999999999999999998755
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.86 E-value=0.0027 Score=63.05 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=157.6
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
++.|...+++++ .+.|..++..|..++.-.. ..-..+++.|.++.+-..|.+++..++..++..|..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPA--------SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCc--------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 566777777665 5677888877777654321 233567788999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 468 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~ 468 (870)
+++.. |..+.+.. .+..|++.| .+.++.++.....+|..|.... +.....+.+ ..++.|++-|.+
T Consensus 74 ~~~~~-~~~~~~~~---~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~L~~~l~~-- 139 (252)
T 4hxt_A 74 GPDEA-IKAIVDAG---GVEVLVKLL-TSTDSEVQKEAARALANIASGP-------DEAIKAIVDAGGVEVLVKLLTS-- 139 (252)
T ss_dssp SCHHH-HHHHHHTT---HHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChHH-HHHHHHCC---CHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHcC--
Confidence 88874 55555533 444555544 5678999999999999997421 112222333 345555544321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002889 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (870)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lk 548 (870)
..+.+....+..|+.+..++..+ +..+...+++..++.++.+.+.-++..|++.+..+.. .
T Consensus 140 -----------------~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~ 200 (252)
T 4hxt_A 140 -----------------TDSEVQKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-G 200 (252)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-S
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-C
Confidence 12445667788888877765543 4467778899999999999999999999999999876 4
Q ss_pred hhHHHHHHHhcCChHHHHHHHH
Q 002889 549 DEHLINHFVKNNLLKPIVDAFV 570 (870)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~ 570 (870)
+.-..+.+++.+++.++++++.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGG
T ss_pred CHHHHHHHHHCCCHHHHHHHHC
Confidence 5557788899999998888774
No 5
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=7.6e-05 Score=71.05 Aligned_cols=96 Identities=10% Similarity=0.266 Sum_probs=79.4
Q ss_pred CeeEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCC-CcceeEeecCCCCccccc-cCeEEEecCCC---cc--
Q 002889 15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEED-NETILLHRISPDDIYRKQ-EDTIISWRDPE---YS-- 87 (870)
Q Consensus 15 ~RVKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d-~~~LL~s~I~~~d~YqkQ-qeTLIvWte~~---~g-- 87 (870)
.|.|+|+..+ +.|.+||+|-+.+--.+ .....|++|.+.. +..+|.+.|.++-.|+.. .+.+.+|+=+. .+
T Consensus 18 ~raKLf~~~~-~~WkERGvG~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~~ 95 (125)
T 2ec1_A 18 KKCKLFYKKD-NEFKEKGIGTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKN 95 (125)
T ss_dssp EEEEEEEECS-SSEEEEEEEEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCSSS
T ss_pred EeeEEEEecC-CCcccccEEEEEeeecC-CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccCCC
Confidence 6999999975 79999999999986433 4679999999986 789999999999999987 47888886321 12
Q ss_pred ----ccccccccCccchhHHHHHHHHHhh
Q 002889 88 ----TELALSFQEPTGCSYIWDNICNVQR 112 (870)
Q Consensus 88 ----~DlALSFQe~~GC~~IW~~I~~VQ~ 112 (870)
.-+||-|-.++-++++.+.|.+.|.
T Consensus 96 ~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 96 ATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp SSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 3499999999999999999988774
No 6
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=97.77 E-value=8.4e-05 Score=76.14 Aligned_cols=100 Identities=18% Similarity=0.323 Sum_probs=82.6
Q ss_pred CeeEEEEe--C-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEecC---CCc
Q 002889 15 QRVKVYRL--N-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRD---PEY 86 (870)
Q Consensus 15 ~RVKVY~L--~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte---~~~ 86 (870)
.|.|||++ . +++.|.+||+|-+.+-.........|++|.+.....+|.+.|.++-.|+++. +.-++|+- ...
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad 130 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFAD 130 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTT
T ss_pred EeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCC
Confidence 69999999 3 3578999999999987655556799999999999999999999999999874 56889942 211
Q ss_pred c----ccccccccCccchhHHHHHHHHHhhcc
Q 002889 87 S----TELALSFQEPTGCSYIWDNICNVQRNL 114 (870)
Q Consensus 87 g----~DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (870)
+ .-+||.|-.++-+..+...|...|..+
T Consensus 131 ~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~ 162 (201)
T 1k5d_B 131 ECPKPELLAIRFLNAENAQKFKTKFEECRKEI 162 (201)
T ss_dssp SSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 1 348999999999999999999998754
No 7
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=97.70 E-value=0.00012 Score=70.93 Aligned_cols=99 Identities=15% Similarity=0.299 Sum_probs=81.2
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEec---CCCcc-
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEYS- 87 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt---e~~~g- 87 (870)
.|+|+|++.. ++.|.++|+|-+.+-.........|++|.+.....+|.+.|.++-.|+... +.-++|. |-..|
T Consensus 28 ~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg~ 107 (140)
T 4hat_B 28 VRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGE 107 (140)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSS
T ss_pred EeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCCCCC
Confidence 5899999953 578999999999986555556799999999999999999999999999875 4577895 21112
Q ss_pred ---ccccccccCccchhHHHHHHHHHhhc
Q 002889 88 ---TELALSFQEPTGCSYIWDNICNVQRN 113 (870)
Q Consensus 88 ---~DlALSFQe~~GC~~IW~~I~~VQ~~ 113 (870)
.-+|+-|-.++-++++.+.|...|..
T Consensus 108 ~~~~~~~iRfk~~e~A~~f~~~~ee~~~~ 136 (140)
T 4hat_B 108 AEAFTFAIRFGSKENADKFKEEFEKAQEI 136 (140)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888864
No 8
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00016 Score=73.43 Aligned_cols=99 Identities=14% Similarity=0.278 Sum_probs=81.6
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEecCC---Ccc-
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP---EYS- 87 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~---~~g- 87 (870)
.|+|||++.. .+.|.+||+|.+.+-.......+.|++|.+.....+|.+.|.++-.|++.. +.-++|.=+ ..|
T Consensus 79 ~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge 158 (191)
T 3m1i_B 79 VRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGE 158 (191)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSS
T ss_pred EeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCC
Confidence 6999999953 578999999999986554456799999999989999999999999999984 457888721 112
Q ss_pred ---ccccccccCccchhHHHHHHHHHhhc
Q 002889 88 ---TELALSFQEPTGCSYIWDNICNVQRN 113 (870)
Q Consensus 88 ---~DlALSFQe~~GC~~IW~~I~~VQ~~ 113 (870)
.-+||.|-.++-+..+...|...|..
T Consensus 159 ~k~e~~aIRFk~~E~A~eF~~~~eeaq~~ 187 (191)
T 3m1i_B 159 AEAFTFAIRFGSKENADKFKEEFEKAQEI 187 (191)
T ss_dssp CEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888864
No 9
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.66 E-value=0.0088 Score=64.18 Aligned_cols=203 Identities=11% Similarity=0.167 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHhCCC----------CCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHH-HHcCCCc
Q 002889 306 DSTFIQELFARLRSP----------TTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTD-ALQSQDK 374 (870)
Q Consensus 306 d~~FL~eLF~~l~~~----------~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~-~L~~~d~ 374 (870)
+.+-|++....+.++ +.+.+.|..+..-|.++|. ++. .. ..+++.|.++.+-. .|.++++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~d--na----~~~~~~G~l~~Lv~~lL~s~~~ 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMD--NA----ADFCQLSGMHLLVGRYLEAGAA 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHH--HH----HHHHHTTHHHHHHHTTTTCSSH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh---Chh--hH----HHHHHcCCHHHHHHHHHcCCCH
Confidence 356688888888887 3344566666655555443 332 11 24678898888877 8999999
Q ss_pred chhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH
Q 002889 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE 454 (870)
Q Consensus 375 ~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~ 454 (870)
.+|..|+-+|..+...+|. .|..+++.. -+..|+.+|-.+.+..++...+-+|-.|.-... +....|+. .
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g---~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~---~ 166 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAA-IQEQVLGLG---ALRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLR---L 166 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHTT---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHhCCHH-HHHHHHHCC---CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc---HHHHHHHH---C
Confidence 9999999999999999998 577777654 344455555556678888888888888763211 12223333 2
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhH
Q 002889 455 KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLV 534 (870)
Q Consensus 455 ~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~ 534 (870)
..++.|+.-|... ...+....|-.|+.++..++ ..+.++...+++..++.||.+++.-++
T Consensus 167 ggi~~L~~lL~~~-------------------d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i~~Lv~LL~~~d~~v~ 226 (296)
T 1xqr_A 167 DGFSVLMRAMQQQ-------------------VQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPFH 226 (296)
T ss_dssp THHHHHHHHHHSS-------------------CHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHHHHHHHHHTSCCSTHH
T ss_pred CCHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCHHHHHHHHcCCChhHH
Confidence 4566666655321 23345566677777666644 346678889999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 002889 535 VAAVRFVRTILSR 547 (870)
Q Consensus 535 LaAlRFlR~iI~l 547 (870)
-.|++.+.+|+..
T Consensus 227 ~~al~aL~~l~~~ 239 (296)
T 1xqr_A 227 EHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 10
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=97.60 E-value=0.00017 Score=70.70 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=73.3
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeC----CCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEec--CCCc-
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSME----RSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWR--DPEY- 86 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e----~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWt--e~~~- 86 (870)
.|+|||.+.. ++.|.++|+|.+.+-... ......|++|.+.....+|.+.|.++-.|++..++-++|+ |++.
T Consensus 32 ~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 111 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQ 111 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSSSC
T ss_pred EEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCceeecCCCCEEEEEeecCCCC
Confidence 6899999953 578999999999876532 2346899999999888999999999999999999999999 4321
Q ss_pred -cccccccccCccchhHHHHHH
Q 002889 87 -STELALSFQEPTGCSYIWDNI 107 (870)
Q Consensus 87 -g~DlALSFQe~~GC~~IW~~I 107 (870)
-.-++|.|-.++-+. .+..|
T Consensus 112 ~~~~~lirfk~~e~a~-lf~~~ 132 (150)
T 2crf_A 112 GVKVFLISASSKDTGQ-LYAAL 132 (150)
T ss_dssp CEEEEEEECCHHHHHH-HHHHH
T ss_pred ceEEEEEEECCHHHHH-HHHHH
Confidence 245899999888874 44433
No 11
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=97.55 E-value=0.0002 Score=69.23 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=71.8
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCC----CcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCC----
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMER----SEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPE---- 85 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~----~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~---- 85 (870)
.|.|+|++.. ++.|.++|+|.+.+-.... .....|++|.+.....+|.+.|.++-.|+++.+.-++|+-.+
T Consensus 20 ~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 99 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQ 99 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--CC
T ss_pred EEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCCCC
Confidence 5899999964 5789999999998765431 246899999999888999999999999999889999998321
Q ss_pred ccccccccccCccchhHHHHH
Q 002889 86 YSTELALSFQEPTGCSYIWDN 106 (870)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~ 106 (870)
.-.-++|.|-.++-+ ..+..
T Consensus 100 ~~~~~lirfk~~e~a-~lf~~ 119 (138)
T 2y8g_A 100 GVKVFLISASSKDTG-QLYAA 119 (138)
T ss_dssp CCCEEEEECCHHHHH-HHHHH
T ss_pred ceEEEEEEECCHHHH-HHHHH
Confidence 124689999888766 34433
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.44 E-value=0.065 Score=60.94 Aligned_cols=241 Identities=14% Similarity=0.135 Sum_probs=153.6
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002889 309 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (870)
Q Consensus 309 FL~eLF~~l~~~~~~---~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv 385 (870)
.+.-|...+..+..+ ..-.+.++..|..+|.-....... ..-.|+++++-..|.+++..++..++-.|.
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH--------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH--------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 356666777655433 233455555555554422222211 122467888989999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002889 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (870)
Q Consensus 386 ~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~ 465 (870)
.+.++++..... +.... .+..|++. +...+..++.....+|..|.-.. ...+..+++ ...++.|+.-|
T Consensus 277 ~l~~~~~~~~~~-v~~~g---~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~---~~~~~~i~~---~g~l~~L~~LL- 344 (529)
T 3tpo_A 277 YLTDGPNERIEM-VVKKG---VVPQLVKL-LGATELPIVTPALRAIGNIVTGT---DEQTQKVID---AGALAVFPSLL- 344 (529)
T ss_dssp HHHSSCHHHHHH-HHTTT---CHHHHHHH-HTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHH---TTGGGGHHHHT-
T ss_pred HhhhhhhhhHHH-HHhcc---chHHHHHH-hcCCChhHHHHHHHHHHHHHccc---hHHHHHHhh---cccHHHHHHHH-
Confidence 999988875443 33322 44555654 45678888888888888775321 111111111 12233333322
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
.. ....+-...|-.|+-+..+... .+..++..+++..++.++.+.+.-++-.|+..+.++.
T Consensus 345 ~~------------------~~~~i~~~a~~aL~nl~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 345 TN------------------PKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp TC------------------SSHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred cC------------------CCHHHHHHHHHHHHHHhcccHH-HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11 1223334455556655554433 3556778889999999999999899999999999988
Q ss_pred cCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002889 546 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (870)
Q Consensus 546 ~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr 591 (870)
.-.+.-..+||++.+.+.|+++++.. .+.=+-..+|+-++.|.
T Consensus 406 ~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 406 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 77777788999999999999998843 23344456677666664
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.36 E-value=0.023 Score=56.92 Aligned_cols=221 Identities=11% Similarity=0.089 Sum_probs=153.2
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
..+..++..+.+++. +.+..++..|..+..- .. ..-+.+++.|.++.+-..|++++..++..++.+|..+
T Consensus 12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~----~~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSD----GN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (252)
T ss_dssp CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH----HH----HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC----CC----chHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 346777887877554 5667777766544332 11 2234578899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHh
Q 002889 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITA 466 (870)
Q Consensus 388 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~ 466 (870)
...++.. +..+++.. .+..|++. +.+.++.++.+...+|..|..... .+ ...+.+ ..++.|++-|.+
T Consensus 82 ~~~~~~~-~~~i~~~g---~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~----~~---~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 82 ASGGNEQ-IQAVIDAG---ALPALVQL-LSSPNEQILQEALWALSNIASGGN----EQ---IQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp TTSCHHH-HHHHHHTT---HHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSCH----HH---HHHHHHTTHHHHHHHGGGC
T ss_pred hcCCHHH-HHHHHHcC---CHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCc----hH---HHHHHHCCCHHHHHHHHhC
Confidence 9988875 44455432 44555654 455789999999999999964321 11 122333 345555554421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002889 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (870)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~ 546 (870)
....+....+..|+.+....+. .+..+...+++..++.++...+.-++..|++.+..+..
T Consensus 150 -------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 150 -------------------PNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 1234445666777766655433 34456778899999999999999999999999999885
Q ss_pred CchhHHHHHHHhcCChHHHHHHHHH
Q 002889 547 RHDEHLINHFVKNNLLKPIVDAFVA 571 (870)
Q Consensus 547 lkDefy~ryiIk~nLf~PIl~~f~~ 571 (870)
.. +-....+++.+.+.+++.++..
T Consensus 210 ~~-~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 210 GG-NEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp SC-HHHHHHHHHTTHHHHHHTTTTC
T ss_pred CC-HHHHHHHHHCCcHHHHHHHhCC
Confidence 44 4466678899999998877743
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.32 E-value=0.033 Score=60.32 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=159.1
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
.+++.|...++++. +..-|..++..|..++.... . .-+.+++.|+++.+-..|++++..+|..|+..|..+
T Consensus 64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~----~----~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNS----L----QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCH----H----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCH----H----HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56777887777652 45667888888887765321 1 123567899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002889 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (870)
Q Consensus 388 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 467 (870)
...+|. .|..+++.. .+..|++.+-.+.+..++.+...+|..|.....-.. .. . +....++.|++-+.+
T Consensus 135 ~~~~~~-~~~~~~~~~---~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~-~----~~~~~l~~L~~~l~~- 203 (450)
T 2jdq_A 135 AGDSTM-CRDYVLDCN---ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EF-A----KVSPCLNVLSWLLFV- 203 (450)
T ss_dssp HTTCHH-HHHHHHHTT---CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CG-G----GTGGGHHHHHHHTTC-
T ss_pred ccCCHH-HHHHHHHCC---CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CH-H----HHHHHHHHHHHHHcc-
Confidence 998877 466666543 456666666556788999999999999985321000 01 1 124455555543321
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002889 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (870)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l 547 (870)
....+....+..|+.+..+.+-. +..+....++..++.++...+.-++..|++.+..+..-
T Consensus 204 ------------------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 204 ------------------SDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTSSSHHH-HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred ------------------CCHHHHHHHHHHHHHHHCCCcHH-HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 12356667788888887755433 34566778999999999988889999999999998765
Q ss_pred chhHHHHHHHhcCChHHHHHHHHH
Q 002889 548 HDEHLINHFVKNNLLKPIVDAFVA 571 (870)
Q Consensus 548 kDefy~ryiIk~nLf~PIl~~f~~ 571 (870)
.++ ..+.++..+++.+++.++..
T Consensus 265 ~~~-~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 265 DDI-QTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp CHH-HHHHHHTTTHHHHHHHHTTC
T ss_pred ChH-HHHHHHHCccHHHHHHHHcC
Confidence 554 56678888999888887753
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.26 E-value=0.044 Score=54.23 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=140.7
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
..++.|...+++++ .+-|..++..|..++.-. + ..-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 44 g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 44 GGVEVLVKLLTSTD--SEVQKEAARALANIASGP----D----EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC----H----HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCC----h----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46888888888754 566777777766654321 1 2234567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002889 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (870)
Q Consensus 388 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~ 466 (870)
..++|.. +..+.+. -.+..|++. +.+.++.++.....+|..|.... +. ....+. ...++.|++-|.+
T Consensus 114 ~~~~~~~-~~~~~~~---~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~----~~---~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 114 ASGPDEA-IKAIVDA---GGVEVLVKL-LTSTDSEVQKEAARALANIASGP----DE---AIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp TTSCHHH-HHHHHHT---THHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSC----HH---HHHHHHHTTHHHHHHHHTTC
T ss_pred HcCCHHH-HHHHHHC---CCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCC----HH---HHHHHHHCcCHHHHHHHHCC
Confidence 9888875 4444442 255566654 45678899999999999886431 11 112222 3345555554421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002889 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (870)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~ 546 (870)
..+.+....+..|+-+...+ ...+..+...+++..++.+++..+.-++-.|++.++++..
T Consensus 182 -------------------~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 182 -------------------TDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 12345556677777666643 3455677888999999999999999999999999999887
Q ss_pred CchhH
Q 002889 547 RHDEH 551 (870)
Q Consensus 547 lkDef 551 (870)
.....
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 65543
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.20 E-value=0.075 Score=59.69 Aligned_cols=234 Identities=14% Similarity=0.123 Sum_probs=161.2
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002889 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (870)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii 388 (870)
.++.|...+.+++ +..-|..++..|..+|.-. ...-..+++.|.++.+-..|.+++..+|..|+-.|..|.
T Consensus 118 ~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 118 VVPRFVQFLTRED-FPQLQFEAAWALTNIASGT--------SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp CHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC--------HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3555555555432 2455667776666655421 123345678899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002889 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (870)
Q Consensus 389 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~ 468 (870)
..+|. .|..+.... .+..|+..|-.+.+..++...+.+|..|....... +. .....+++.|+.-|..
T Consensus 189 ~~~~~-~~~~i~~~g---~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~---~~----~~~~~~l~~L~~lL~~-- 255 (528)
T 4b8j_A 189 GDSPK-CRDLVLANG---ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP---SF----EQTRPALPALARLIHS-- 255 (528)
T ss_dssp HTCHH-HHHHHHHTT---CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC---CH----HHHTTHHHHHHHHTTC--
T ss_pred CCChh-hHHHHHHCC---cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC---cH----HHHHHHHHHHHHHHCC--
Confidence 87776 466666543 45556666656778999999999999998754211 11 1124455555554321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002889 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (870)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lk 548 (870)
..+.+....|..|+.+......++. .++...++..++.++...+.-++..|++.+..+..-.
T Consensus 256 -----------------~~~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 256 -----------------NDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTSSCHHHHH-HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 1345667788888888876655443 4566789999999999999999999999999998755
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002889 549 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (870)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (870)
+ .....+++.+++.+++.++... ....+...||.
T Consensus 318 ~-~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~ 351 (528)
T 4b8j_A 318 D-AQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACW 351 (528)
T ss_dssp H-HHHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHH
T ss_pred H-HHHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHH
Confidence 4 4666788999999999888532 13334444443
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.13 E-value=0.071 Score=60.12 Aligned_cols=237 Identities=12% Similarity=0.126 Sum_probs=158.1
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-K~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ 386 (870)
..++.|...+.+ .+.+-++.++..|..+|.-. ...+ ..+..|+++.|-..|.+++..++..++..|..
T Consensus 215 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 215 NAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp TCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457777887776 44567788888888877543 1211 23457899999999999999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 002889 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 465 (870)
Q Consensus 387 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~ 465 (870)
+....+..+.. ++.. .++..|+..| .+.+..++.....+|..|..... .....+.+ ..++.|+.-|.
T Consensus 284 L~~~~~~~~~~-~~~~---~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 284 LSDGPQEAIQA-VIDV---RIPKRLVELL-SHESTLVQTPALRAVGNIVTGND-------LQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HHSSCHHHHHH-HHHT---TCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHHHTT
T ss_pred HhCCCHHHHHH-HHhc---CcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCH-------HHHHHHHHcchHHHHHHHHc
Confidence 99998876554 3332 2556666644 56788888888888888764211 12222232 34444444331
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
. ....+-...|-.|+.+....+..++ .++..+++..++.++...+.-++-.|+..+..+.
T Consensus 352 ~-------------------~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 352 S-------------------PKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C-------------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 0223444556666666654444444 4557789999999999888899999999999987
Q ss_pred cCchh--HHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002889 546 SRHDE--HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (870)
Q Consensus 546 ~lkDe--fy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefI 590 (870)
...+. -+.+++++.+++.+++.++... +.-+-.+++..+..|
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENI 455 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 65443 5778999999999999988542 223333444444433
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.12 E-value=0.25 Score=55.45 Aligned_cols=238 Identities=14% Similarity=0.142 Sum_probs=161.1
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH-cCCCcchhhhhhHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILIL 386 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L-~~~d~~ir~~atDILv~ 386 (870)
..++-|...+.++ +.+-|..++..|..+|.-. +..| ..++..|.++.+-..| .+.+..++..++..|..
T Consensus 160 g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~----~~~~----~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 160 GAVPIFVKLLGSS--SDDVREQAVWALGNVAGDS----PKCR----DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp THHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTC----HHHH----HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCC----hhhH----HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4577788888774 4567788888887776422 2222 3456789999888888 67788999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 002889 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 465 (870)
Q Consensus 387 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~ 465 (870)
+....|......+ ...+..|++.| .+.++.++.....+|..|.+... .....+.+ ..++.|+.-|.
T Consensus 230 L~~~~~~~~~~~~-----~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 230 FCRGKPQPSFEQT-----RPALPALARLI-HSNDEEVLTDACWALSYLSDGTN-------DKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHCSSSCCCHHHH-----TTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCH-------HHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCCCCcHHHH-----HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCH-------HHHHHHHHcCHHHHHHHHHc
Confidence 9988654322211 23566667654 66788999999999998875421 12223333 45566665442
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhcc-chhhHHHHHHHHHHH
Q 002889 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFVRTI 544 (870)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~-~K~L~LaAlRFlR~i 544 (870)
. ..+.+....+..|+-++.... .....++..+++..++.++... +.-++..|++.+..+
T Consensus 297 ~-------------------~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 297 H-------------------PSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred C-------------------CChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 2 123445566777777776443 3445577788999999999988 889999999999998
Q ss_pred hcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002889 545 LSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (870)
Q Consensus 545 I~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr 591 (870)
..- +.-...+++..+++.+++.++... ...+...|+.-|-.+..
T Consensus 357 ~~~-~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 357 TAG-NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATS 400 (528)
T ss_dssp HTS-CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHc
Confidence 864 445677889999999999988643 22344444444433333
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.95 E-value=0.077 Score=59.82 Aligned_cols=222 Identities=12% Similarity=0.093 Sum_probs=153.7
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002889 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (870)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii 388 (870)
.++.|...+.++. +..-|..++..|..++... +. .-..+++.|+++.+-..|.+++..+|..|+..|..+.
T Consensus 131 ~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~----~~----~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 131 VVPRLVEFMRENQ-PEMLQLEAAWALTNIASGT----SA----QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 201 (530)
T ss_dssp CHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC----HH----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4555666665542 3456677777666655421 11 2245678999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002889 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (870)
Q Consensus 389 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~ 468 (870)
..+|. .|..+.... .+..|++.| .+.+..++...+.+|..|.....-. .. + ......++.|+.-|..
T Consensus 202 ~~~~~-~~~~~~~~~---~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~---~~-~--~~~~~~l~~L~~lL~~-- 268 (530)
T 1wa5_B 202 GDSTD-YRDYVLQCN---AMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQ---PD-W--SVVSQALPTLAKLIYS-- 268 (530)
T ss_dssp TTCHH-HHHHHHHTT---CHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSC---CC-H--HHHGGGHHHHHHHTTC--
T ss_pred CCCcc-chHHHHHcC---cHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCC---Cc-H--HHHHhHHHHHHHHHcC--
Confidence 88876 466665542 455556544 4578889999999999998643111 11 1 1224455655553311
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002889 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (870)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lk 548 (870)
..+.+....|..|+.++...+..+ ..++...++..++.++...+.-++..|++.+..+..-.
T Consensus 269 -----------------~d~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 269 -----------------MDTETLVDACWAISYLSDGPQEAI-QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHSSCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHhCCCHHHH-HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 124566778888888887655443 34567789999999999888899999999999987655
Q ss_pred hhHHHHHHHhcCChHHHHHHHHH
Q 002889 549 DEHLINHFVKNNLLKPIVDAFVA 571 (870)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~~ 571 (870)
++ ..+.++..+++.+++.++..
T Consensus 331 ~~-~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 331 DL-QTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HH-HHHHHHHTTHHHHHHHHTTC
T ss_pred HH-HHHHHHHcchHHHHHHHHcC
Confidence 54 55667888999998887743
No 20
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=96.87 E-value=0.0039 Score=59.54 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=72.9
Q ss_pred CeeEEEEeC-CCCCceeccce-----EEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccc
Q 002889 15 QRVKVYRLN-DDGKWDDQGTG-----HVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYST 88 (870)
Q Consensus 15 ~RVKVY~L~-~~~~W~D~GTG-----~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 88 (870)
-|++||... +.+.|...|+| .|++-......-..|+-+...+...++++.|.++-.|.+--.+..+|.+.+ .
T Consensus 9 ~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~~--~ 86 (130)
T 1qc6_A 9 ARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDAR--Q 86 (130)
T ss_dssp EEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEEECSS--C
T ss_pred EEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcCC--E
Confidence 589999995 35689999998 333333223223444545557888999999999999999999999999885 7
Q ss_pred cccccccCccchhHHHHHHHHHhhcc
Q 002889 89 ELALSFQEPTGCSYIWDNICNVQRNL 114 (870)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (870)
=++|+|++.+-+...-+.+.+.....
T Consensus 87 ~~GL~F~se~eA~~F~~~~~~al~~~ 112 (130)
T 1qc6_A 87 VYGLNFASKEEATTFSNAMLFALNIM 112 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999888777777665543
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.70 E-value=0.23 Score=48.19 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=133.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
-+-|...++++ +.+-|..++..|..++.-. + ..-..+++.|.++.+-..|.+++..++..++-.|..+..
T Consensus 14 ~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~----~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 14 LPQMVQQLNSP--DQQELQSALRKLSQIASGG----N----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSC----H----HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhcCC--CHHHHHHHHHHHHHHHcCC----H----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 33444555543 4567788888887766322 1 123467788999999999999999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASC 468 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~~~ 468 (870)
+++.. +..+++.. .+..|++.| .+.++.++.....+|..|.... + .....+. ...++.|++-|..
T Consensus 84 ~~~~~-~~~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~-- 149 (210)
T 4db6_A 84 GGNEQ-IQAVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGG----N---EQIQAVIDAGALPALVQLLSS-- 149 (210)
T ss_dssp SCHHH-HHHHHHTT---CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CCcHH-HHHHHHCC---CHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCC----H---HHHHHHHHcCcHHHHHHHHcC--
Confidence 88874 44455543 445556544 6678999999999999986421 1 1122222 3345555554421
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
....+....+..|+-++..++ ..+..+...+.+..+..++...+.-++-.|+.+++.+.
T Consensus 150 -----------------~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 150 -----------------PNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 123455667777777776433 44667888889999999999998899999999998764
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.59 E-value=0.072 Score=60.60 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=128.0
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhHHHHHHH
Q 002889 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 429 (870)
Q Consensus 354 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 429 (870)
+.+++.|.++.+-..|.+++..++..|+-.|..|..++|. .|..+++.... ..|+..|-.. ...++...++-
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i---~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAI---DPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCH---HHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCc---HHHHHHHhccchhHhHHHHHHHHHH
Confidence 3578899999999999999999999999999999988887 57777765433 3334333322 22344555666
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh
Q 002889 430 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 509 (870)
Q Consensus 430 aLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yri 509 (870)
+|..|.-....... +. .-...++.|++-|. ...+++....|-.|+++..++..+.
T Consensus 232 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~-------------------~~~~~v~~~a~~aL~~l~~~~~~~~ 286 (529)
T 3tpo_A 232 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLH-------------------HNDPEVLADSCWAISYLTDGPNERI 286 (529)
T ss_dssp HHHHHHCCCTTCCC----HH--HHHHHHHHHHHHTT-------------------SSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhcccchhh----HH--HHhhHHHHHHHHhc-------------------CCcHHHHHHHHHHHHHhhhhhhhhH
Confidence 66666532211110 00 11233444444221 1234567778888998887766554
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002889 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (870)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~ 570 (870)
..+....++.+++.|+.+.+..++..|+|.+..++...| .....++..+.+.+++.++.
T Consensus 287 -~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~ 345 (529)
T 3tpo_A 287 -EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLT 345 (529)
T ss_dssp -HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHHTT
T ss_pred -HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch-HHHHHHhhcccHHHHHHHHc
Confidence 456778899999999999999999999999999886655 46788899999999887764
No 23
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.56 E-value=0.31 Score=55.26 Aligned_cols=242 Identities=14% Similarity=0.130 Sum_probs=153.5
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002889 309 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (870)
Q Consensus 309 FL~eLF~~l~~~~~~---~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv 385 (870)
.+.-|...+.+++.+ ..-.+.+...|..+|.-....... ..-.|+++++-..|.+++..++..++-.|.
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH--------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH--------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 355666777665433 233455555555544422222211 112467888889999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002889 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (870)
Q Consensus 386 ~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~ 465 (870)
.+.++++..... +... -.+..|++.| ...+..++.....+|..|.-.. ...+..++ +.. .+.+|.
T Consensus 258 ~L~~~~~~~~~~-i~~~---g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~----~~g---~l~~L~ 322 (510)
T 3ul1_B 258 YLTDGPNERIEM-VVKK---GVVPQLVKLL-GATELPIVTPALRAIGNIVTGT---DEQTQKVI----DAG---ALAVFP 322 (510)
T ss_dssp HHTSSCHHHHHH-HHTT---TCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSC---HHHHHHHH----HTT---GGGGCC
T ss_pred HHhhchhhhHHH-HHhc---ccchhhhhhh-cCCChhhhhHHHHHHHHhhcCC---HHHHHHHh----hcc---chHHHH
Confidence 999988875443 3332 2445556544 5567788877777777764221 11111111 111 111111
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
.. .......+....|-.|+-+...... .+..+...+++..++.++++.+.-++-.|...+.++.
T Consensus 323 ~L---------------L~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 323 SL---------------LTNPKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp -C---------------TTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HH---------------hcCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11 0112344555666666666654433 4556778899999999999999999999999999998
Q ss_pred cCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002889 546 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (870)
Q Consensus 546 ~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~ 592 (870)
.-.+.-..+||++.+.+.|+++++.. .+.=+-..+|+.++.|-+
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 87777788999999999999998743 334455567777766643
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.54 E-value=0.31 Score=48.59 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=136.6
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
..++.|...+++++ .+-|..++..|..++.-. +. .-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 54 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~----~~----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 54 GALPALVQLLSSPN--EQILQEALWALSNIASGG----NE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp THHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCC----HH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 56888899888765 567778887777665321 12 224567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002889 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (870)
Q Consensus 388 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~ 466 (870)
...++.... .+.... .+..|++.| .+.+..++.....+|..|.... + .....+. ...++.|+.-|..
T Consensus 124 ~~~~~~~~~-~~~~~~---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~ 191 (252)
T 4db8_A 124 ASGGNEQIQ-AVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGG----N---EQIQAVIDAGALPALVQLLSS 191 (252)
T ss_dssp TTSCHHHHH-HHHHTT---HHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTCHHHHHHGGGC
T ss_pred hcCCchHHH-HHHHCC---CHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC----h---HHHHHHHHCCCHHHHHHHHCC
Confidence 988876433 334332 556666654 6678899999999999987432 1 1122222 3345555553321
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
..+.+....+..|+-++.+++ ..+..+...+++..++.+++..+.-++-.|++.+..+.
T Consensus 192 -------------------~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 192 -------------------PNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp -------------------SSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred -------------------CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 123455667777777765444 34556778889999999999988889999988887653
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.45 E-value=0.5 Score=51.02 Aligned_cols=202 Identities=10% Similarity=0.036 Sum_probs=136.0
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
..++-|...++++ +.+-+..++..|..+|... + .....++..|+++.+-..|.+++..+|..++..|..+
T Consensus 192 ~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 192 PCLNVLSWLLFVS--DTDVLADACWALSYLSDGP----N----DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp GGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSS----H----HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCC----c----HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 4677777777654 3456777777777665421 1 1234567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002889 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (870)
Q Consensus 388 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~ 466 (870)
..+++...+. ++.. -.+..|++.| .+.++.++.....+|..|.... ......+. ...++.|+.-|.+
T Consensus 262 ~~~~~~~~~~-~~~~---~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 262 VTGDDIQTQV-ILNC---SALQSLLHLL-SSPKESIKKEACWTISNITAGN-------RAQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp TTSCHHHHHH-HHTT---THHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhCChHHHHH-HHHC---ccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHhc
Confidence 9998875443 3332 3566666654 5568888888888887775311 11222233 2456666665543
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002889 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (870)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~ 546 (870)
. .+.+-...|-.|+-++...+.....+++..+++..++.++...+.-++..|+..+.+++.
T Consensus 330 ~-------------------~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 330 A-------------------EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp S-------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 123334556666666665433333455678899999999999888999999999999887
Q ss_pred Cchh
Q 002889 547 RHDE 550 (870)
Q Consensus 547 lkDe 550 (870)
..+.
T Consensus 391 ~~~~ 394 (450)
T 2jdq_A 391 LGEQ 394 (450)
T ss_dssp HHHH
T ss_pred hchh
Confidence 5443
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.29 E-value=0.4 Score=46.53 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=126.5
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002889 355 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (870)
Q Consensus 355 ~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (870)
.....|..+.+...|.++|..++..|+-.|..+..+++...+ .+.+.. .+..|++.| .+.++.++.+...+|..|
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQ-AVIDAG---ALPALVQLL-SSPNEQILQEALWALSNI 81 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH-HHHHTT---HHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHcC---CHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 344567889999999999999999999999999988887544 444432 455666654 556889999988898888
Q ss_pred cCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHH
Q 002889 435 LDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF 513 (870)
Q Consensus 435 LDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~i 513 (870)
.... +.....+.+ ..++.|+.-|.+ ..+.+....+-.|+.+..+... .+..+
T Consensus 82 ~~~~-------~~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~ 134 (210)
T 4db6_A 82 ASGG-------NEQIQAVIDAGALPALVQLLSS-------------------PNEQILQEALWALSNIASGGNE-QIQAV 134 (210)
T ss_dssp TTSC-------HHHHHHHHHTTCHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred hcCC-------cHHHHHHHHCCCHHHHHHHHcC-------------------CcHHHHHHHHHHHHHHHcCCHH-HHHHH
Confidence 5211 112223333 345666554422 1234445566666666654433 34456
Q ss_pred hhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002889 514 LLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (870)
Q Consensus 514 l~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~ 570 (870)
+..+++..++.+++..+.-++..|+..+..+..-.++ ....+++.+.+.+++.++.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHGGG
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHh
Confidence 7888999999999999999999999999999875444 5678889999999998775
No 27
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=96.26 E-value=0.016 Score=54.86 Aligned_cols=99 Identities=15% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCeeEEEEeCCC--CCcee--ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccc
Q 002889 14 MQRVKVYRLNDD--GKWDD--QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTE 89 (870)
Q Consensus 14 ~~RVKVY~L~~~--~~W~D--~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 89 (870)
.-|++||.-++. +.|.. .|.|-|+..+ +..... +-|.+-.+...+++..|.++-.|.+.-.+.-.|.+...+.=
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~-d~~~~~-yRIv~~~~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~ 85 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFY-DSTRNV-YRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTV 85 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEE-ETTTTE-EEEEEEETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEE-cCCCCE-EEEEEccCCEEEEeCEecCCcEEeeCCccccEEEcCCCcEE
Confidence 358999999763 48999 5555554433 322333 33334558889999999999999999999999999987788
Q ss_pred ccccccCccchhHHHHHHHHHhhcc
Q 002889 90 LALSFQEPTGCSYIWDNICNVQRNL 114 (870)
Q Consensus 90 lALSFQe~~GC~~IW~~I~~VQ~~~ 114 (870)
++|.||.++-+...-+.|..++..+
T Consensus 86 ~GLnF~s~~eA~~F~~~~~~~~~~l 110 (120)
T 1ddw_A 86 YGLGFSSEHHLSKFAEKFQEFKEAA 110 (120)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777776665443
No 28
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=96.26 E-value=0.018 Score=53.74 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=73.6
Q ss_pred CCeeEEEEeCC-CCCceecc--ceE--EEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccc
Q 002889 14 MQRVKVYRLND-DGKWDDQG--TGH--VTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYST 88 (870)
Q Consensus 14 ~~RVKVY~L~~-~~~W~D~G--TG~--~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 88 (870)
.-|+.||..++ .+.|.-.| .|. |+..+........++.++-.+...+++..|.++-.|.+--.+...|.+.+ +
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~--~ 85 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDAR--Q 85 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEECSS--C
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEecCC--E
Confidence 35889999854 45899999 677 43333222334555666667889999999999999999999999999986 6
Q ss_pred cccccccCccchhHHHHHHHHH
Q 002889 89 ELALSFQEPTGCSYIWDNICNV 110 (870)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~V 110 (870)
=++|.||..+-+....+.+.+.
T Consensus 86 ~~GLnF~se~eA~~F~~~v~~a 107 (112)
T 1evh_A 86 VYGLNFGSKEDANVFASAMMHA 107 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHH
Confidence 7899999999988876666543
No 29
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=96.15 E-value=0.021 Score=53.54 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=75.1
Q ss_pred CCeeEEEEeCC-CCCceeccc---eE--EEEEEeCCCcceeEEEEecC-CCcceeEeecCCCCccccccCeEEEecCCCc
Q 002889 14 MQRVKVYRLND-DGKWDDQGT---GH--VTVDSMERSEELCLFVIDEE-DNETILLHRISPDDIYRKQEDTIISWRDPEY 86 (870)
Q Consensus 14 ~~RVKVY~L~~-~~~W~D~GT---G~--~s~~~~e~~~~~~L~V~sE~-d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~ 86 (870)
.-||.||.-++ .+.|.-.|+ |. |...+........++.++-. +...+++..|.++-.|.+.-.+.-.|.+.+
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~- 86 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDAR- 86 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEEESSS-
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEEecCC-
Confidence 35888999854 456999998 55 44443333344566667766 888999999999999999999999999986
Q ss_pred cccccccccCccchhHHHHHHHHHh
Q 002889 87 STELALSFQEPTGCSYIWDNICNVQ 111 (870)
Q Consensus 87 g~DlALSFQe~~GC~~IW~~I~~VQ 111 (870)
+=++|.||..+-+....+.+.+.-
T Consensus 87 -~~~GLnF~se~eA~~F~~~v~~al 110 (115)
T 1egx_A 87 -QVWGLNFGSKEDAAQFAAGMASAL 110 (115)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -EEEEEecCCHHHHHHHHHHHHHHH
Confidence 778999999999988777665543
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.99 E-value=2 Score=47.35 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=154.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
..++.|...+++++ ..-+..++..|..+|.-..+. | ..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 101 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~----~----~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 101 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGA----K----MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTH----H----HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcch----H----HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46777888887654 567888888888887653221 2 2456789999999999999999999999999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002889 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (870)
Q Consensus 388 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 467 (870)
...++.. |..+.... -+..|++.|-......++.....+|+.|-.... .+..++ +. ..+.+|...
T Consensus 171 a~~~~~~-~~~i~~~~---~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~----~~---g~~~~L~~l 235 (529)
T 1jdh_A 171 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIV----EA---GGMQALGLH 235 (529)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHH----HT---THHHHHHTT
T ss_pred HhCCHHH-HHHHHHCC---CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHH----HC---CCHHHHHHH
Confidence 7777764 44444433 255666666555556666677778887764221 222222 22 234444432
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002889 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (870)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l 547 (870)
... ....+..+.+..|+.+....+.. .....++..++.++++.+.-++..|++.+..+..-
T Consensus 236 l~~---------------~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 236 LTD---------------PSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTS---------------SCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HhC---------------CChHHHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 110 12344455666666666554322 22357888899999999999999999999998554
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHH
Q 002889 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELF 587 (870)
Q Consensus 548 kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELf 587 (870)
+.-....+++.+.+.+++.++....+...+...|+.-|-
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 344667788999999999999876655555555554443
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.97 E-value=0.12 Score=58.71 Aligned_cols=185 Identities=16% Similarity=0.204 Sum_probs=124.8
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhHHHHHHH
Q 002889 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 429 (870)
Q Consensus 354 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 429 (870)
+.+++.|.++.+-..|++++..++..|+-.|..|..++|. .|..+.+.... ..|+..|-.. ...++...+.-
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i---~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAI---DPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCH---HHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCh---HHHHHHHHhccchhhhHHHHHHHHH
Confidence 3568899999999999999999999999999999888887 47777665433 2334433321 22344555566
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh
Q 002889 430 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 509 (870)
Q Consensus 430 aLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yri 509 (870)
+|..+.-....... +. .-...++.|++-|. ....++....|-.|+++..+...++
T Consensus 213 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~-------------------~~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 213 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLH-------------------HNDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHHHHCCCSSCCC----HH--HHHHHHHHHHHHTT-------------------CSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHhhcccchhH----HH--HHHhHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhhchhhhH
Confidence 66665532211110 10 11223344433221 1234567778888888887766654
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHH
Q 002889 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (870)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f 569 (870)
+ .+....++.+++.|+.+.+.-++..|+|.+..+....|+ ....++..+.+.+++.++
T Consensus 268 ~-~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 268 E-MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp H-HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGCC-CT
T ss_pred H-HHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH-HHHHHhhccchHHHHHHh
Confidence 3 466778999999999999999999999999998866554 678888999988876654
No 32
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=95.75 E-value=0.048 Score=54.38 Aligned_cols=104 Identities=14% Similarity=0.268 Sum_probs=77.9
Q ss_pred CCCCCCCCeeEEEEeCCC--CCcee--ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecC
Q 002889 8 QANANPMQRVKVYRLNDD--GKWDD--QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRD 83 (870)
Q Consensus 8 ~~~~~~~~RVKVY~L~~~--~~W~D--~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte 83 (870)
-..+--.-||.||.-++. ..|.- .|.|.|++.+ +..... +-|.+-.+...+++..|.++-.|.+.-.+.-.|.+
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~-d~~rns-yRIvg~~d~kvvinc~I~~~l~Y~kasp~FHqW~d 84 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFY-DSTRNV-YRIISLDGSKAIINSTITPNMTFTKTSQKFGQWAD 84 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEE-ETTTTE-EEEEEEETTEEEEEEECCTTCCEEEEETTEEEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEE-cCCCCE-EEEEEccCCEEEEecEecCCcEEeeCCcccceeec
Confidence 334455679999999764 37999 5666554443 333333 33334557889999999999999999999999999
Q ss_pred CCccccccccccCccchhHHHHHHHHHhhc
Q 002889 84 PEYSTELALSFQEPTGCSYIWDNICNVQRN 113 (870)
Q Consensus 84 ~~~g~DlALSFQe~~GC~~IW~~I~~VQ~~ 113 (870)
...+.=++|.||.++-+...-+.|..++..
T Consensus 85 ~~~~~v~GLnF~Se~eA~~F~~~~~~ale~ 114 (168)
T 1i2h_A 85 SRANTVYGLGFSSEHHLSKFAEKFQEFKEA 114 (168)
T ss_dssp TTTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 876788999999999998877777665543
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.69 E-value=0.88 Score=52.79 Aligned_cols=237 Identities=15% Similarity=0.126 Sum_probs=146.1
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002889 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (870)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii 388 (870)
.++.|...+.++ +..-++.++..|..+|.-..... ...|+++.+-..|.+.+..++..++-+|..+.
T Consensus 225 ~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~-----------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 225 GMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp HHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCC-----------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhh-----------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566666666654 45667778888887765432211 11267888888899999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCC-hhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002889 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG-EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (870)
Q Consensus 389 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d-~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 467 (870)
.+++.. |..+.+.. .+..|++.|....+ ..++.....+|..|.....-....+..++ -...++.|++-|...
T Consensus 292 ~~~~~~-~~~v~~~g---~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~---~~~~l~~L~~lL~~~ 364 (644)
T 2z6h_A 292 CNNYKN-KMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVKLLHPP 364 (644)
T ss_dssp TTCHHH-HHHHHHTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTHHHHHHHTTSTT
T ss_pred cCCHHH-HHHHHHcC---CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HccChHHHHHHhCcc
Confidence 988764 55555433 56667777765443 78888888899888532111000011111 112334443322110
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhcc------------------
Q 002889 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR------------------ 529 (870)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~------------------ 529 (870)
....+....|..|+-+...-..+ ..++..+++..++.++...
T Consensus 365 ------------------~~~~v~~~a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~ 424 (644)
T 2z6h_A 365 ------------------SHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424 (644)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHHHHHHHTTC----------C
T ss_pred ------------------CchHHHHHHHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhc
Confidence 01233344455555555443333 5677888888888887653
Q ss_pred ----chhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002889 530 ----EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (870)
Q Consensus 530 ----~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfef 589 (870)
...++.+|++.++++.. +.-....+.+.+.+.|+++++.. ...|+...|+--|-..
T Consensus 425 ~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 425 EGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCEL 484 (644)
T ss_dssp CSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 23466788999988764 33445567799999999998853 3346666666544443
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.48 E-value=2.5 Score=48.93 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=157.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
..++.|...+.+++ ..-+..++.-|..+|.-.. . ....+++.|.++.+-..|++.+..++..+++.|..+
T Consensus 98 g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~----~----~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 98 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQE----G----AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp THHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHST----T----HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcc----h----hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 56788888887753 5678888888887776431 1 123566889999999999999988888899999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002889 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (870)
Q Consensus 388 iehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~ 467 (870)
...++.. |..+.... .+..|++.|-......++.....+|+.|-.... .+..++ +.. .+.+|...
T Consensus 168 a~~~~~~-~~~i~~~g---~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~----~~g---~l~~L~~l 232 (644)
T 2z6h_A 168 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIV----EAG---GMQALGLH 232 (644)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHH----HTT---HHHHHHTT
T ss_pred HhcCcHH-HHHHHHcC---ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHH----HCC---CHHHHHHH
Confidence 8766653 44454433 355667766555555666777888888864221 233322 221 23344432
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002889 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (870)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l 547 (870)
.. .....+....+..|.-+.++.+. ......++..++.++++.+.-++..|...+..+..-
T Consensus 233 l~---------------~~~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 233 LT---------------DPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TT---------------CSCHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred Hh---------------cCCHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11 01234555666666666655332 223347888899999999988999999999988653
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHH
Q 002889 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFE 588 (870)
Q Consensus 548 kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe 588 (870)
+.-....+++.+.+.+++.++...+++..+...|+.-|-.
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 4446778889999999999998776655666666554443
No 35
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.42 E-value=2.5 Score=50.41 Aligned_cols=218 Identities=11% Similarity=0.132 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhc---------------------c---ChHhHHHHHHHHHh---
Q 002889 306 DSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS---------------------L---QMVQQLRLFRDLMN--- 358 (870)
Q Consensus 306 d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~---------------------L---Q~~~R~~lf~~Lv~--- 358 (870)
-+++++.|+..+.+++ ...|.-++..|..+|.-... + .+.-|..-.+.|..
T Consensus 126 wp~ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp CTTHHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3568888888887654 34556666666666543211 0 11223333333321
Q ss_pred ----------cCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHH
Q 002889 359 ----------EGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFL 428 (870)
Q Consensus 359 ----------~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~ 428 (870)
.++++.+-..+.+++..+|..++..|..+++..|..++.|+- .++..+++. +.+.++.++.+.+
T Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-----~l~~~l~~~-~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-----NIVEYMLQR-TQDQDENVALEAC 277 (852)
T ss_dssp TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-----HHHHHHHHH-HTCSSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-----HHHHHHHHH-ccCCcHHHHHHHH
Confidence 135555656677888889999999999999988887776643 266666654 4567889999999
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC-------------CCcccccccC-CCCcccCCcHHHHHHH
Q 002889 429 EILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC-------------PQEGIAQSAS-SGGRVESTKPEILSNI 494 (870)
Q Consensus 429 eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~-------------p~e~~~~~~~-~~~~~~~~~~~ll~~l 494 (870)
+.+..+.+...+ + .+ .+.++..++..++... +.+....+.. ....++......+..+
T Consensus 278 e~l~~l~~~~~~----~-~~----~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 278 EFWLTLAEQPIC----K-DV----LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp HHHHHHTTSTTH----H-HH----HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcchhH----H-HH----HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 999998765421 1 12 2334444444443321 1010000000 1111221222233333
Q ss_pred HHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHH
Q 002889 495 CELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHL 552 (870)
Q Consensus 495 ~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy 552 (870)
.+ .... .+ -..++..+..++.+.+-..+-+|++.+.++..--.+.+
T Consensus 349 a~----~~~~-------~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 349 AN----VYRD-------EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HH----HHGG-------GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HH----hccH-------HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 32 2221 12 23466777777888888899999999999886655443
No 36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.30 E-value=2.9 Score=49.97 Aligned_cols=210 Identities=15% Similarity=0.186 Sum_probs=111.7
Q ss_pred HHhhCCHHHHHHHHHHhCC-CCCcHHhHHHHHHHHHHHHHh-hhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhh
Q 002889 301 SLLKDDSTFIQELFARLRS-PTTLEESKKNLVHFLHEFCGL-SKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVL 378 (870)
Q Consensus 301 ~~Lq~d~~FL~eLF~~l~~-~~~~~e~rrdlV~FL~E~c~l-sK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~ 378 (870)
+.++.++.|..-|...+.. .+.+..-|.-+...|+..+.- -..+.+..|..+-..|++ +|.++++.+|.
T Consensus 38 ~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~---------~l~~~~~~vr~ 108 (852)
T 4fdd_A 38 EQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN---------NIGDSSPLIRA 108 (852)
T ss_dssp HHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHT---------TTTCSSHHHHH
T ss_pred HHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH---------HHcCCCHHHHH
Confidence 3455667776666666654 344556666666677765531 123444444433322222 13455556666
Q ss_pred hhhHHHHHHHhcC-----hHHHHHHH--HhcCC---------------------------cchHHHHHHHHh---ccCCh
Q 002889 379 TGTDILILFLNQD-----PNLLRSYV--VRQEG---------------------------IPLLGLLVKGMI---TDFGE 421 (870)
Q Consensus 379 ~atDILv~iiehd-----P~lvR~~i--~~qe~---------------------------~~Ll~~Li~~ll---~d~d~ 421 (870)
.+++++..|+.++ |.++-..+ +..++ ...+..++..|+ .+.++
T Consensus 109 ~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 188 (852)
T 4fdd_A 109 TVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188 (852)
T ss_dssp HHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH
Confidence 6666665555544 22221110 00000 011223333222 45677
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH
Q 002889 422 DMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 501 (870)
Q Consensus 422 glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fc 501 (870)
.++...+.+|..++.... . . +...++.++..|+.... ...+.+-...|+.|.-.
T Consensus 189 ~vR~~A~~aL~~~~~~~~--~----~-----~~~~~~~~l~~l~~~~~---------------d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 189 KIRSHAVACVNQFIISRT--Q----A-----LMLHIDSFIENLFALAG---------------DEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHHHHHHHHTTTTTTC--H----H-----HHTSHHHHHHHHHHHHT---------------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--H----H-----HHHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHH
Confidence 777777777766654311 0 0 11223344444443210 01234455677788877
Q ss_pred HhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002889 502 VLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (870)
Q Consensus 502 V~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l 547 (870)
+..++..++.|+ +.++.-++.++...+.-++..|+.|+.++...
T Consensus 243 ~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 243 LEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 877776666654 35777788888888889999999999987654
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.75 E-value=6.6 Score=47.04 Aligned_cols=257 Identities=12% Similarity=0.112 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHH
Q 002889 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 384 (870)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL 384 (870)
..+..+..|...+++.. +.+-|+.++..|..++. . ...+ ..+++.|.++.|-..|++.+..++..|+..|
T Consensus 189 ~~~~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~---~--~~~~----~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL 258 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSH---H--REGL----LAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258 (780)
T ss_dssp TCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHT---S--HHHH----HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC---C--chhH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44577888888886442 56778888888887443 2 1222 3456779999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 002889 385 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (870)
Q Consensus 385 v~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL 464 (870)
..|...++.. |..+.+.. .+..|++.| .+.+..++....++|+.|.-.. ...+..+.. ...++.|++-|
T Consensus 259 ~nLa~~~~~~-~~~v~~~g---~v~~Lv~lL-~~~~~~v~~~a~~aL~~La~~~---~e~~~~i~~---~~~i~~Lv~lL 327 (780)
T 2z6g_A 259 HNLLLHQEGA-KMAVRLAG---GLQKMVALL-NKTNVKFLAITTDCLQILAYGN---QESKLIILA---SGGPQALVNIM 327 (780)
T ss_dssp HHHHHHSTTH-HHHHHHTT---HHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTC---HHHHHHHHT---TTHHHHHHHHH
T ss_pred HHHhCCChhh-HHHHHHcC---CHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCC---hHHHHHHHH---cCCHHHHHHHH
Confidence 9999887663 44443322 455666655 4466777777778888775211 011222221 13455555543
Q ss_pred HhcCCCcccccccC----CCCcccCCcHHHH-HHHHHHHHHHHhhccchhhh---------------HHhhhhHHHHHHH
Q 002889 465 TASCPQEGIAQSAS----SGGRVESTKPEIL-SNICELLCFCVLHHPYRIKC---------------NFLLNNVVDKVLL 524 (870)
Q Consensus 465 ~~~~p~e~~~~~~~----~~~~~~~~~~~ll-~~l~ELL~FcV~~H~yriK~---------------~il~~nll~rVl~ 524 (870)
....+ +....... .-.........+. ..++..|.-+........+. ......++..++.
T Consensus 328 ~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 328 RTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406 (780)
T ss_dssp TTCCC-HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH
T ss_pred hcCCH-HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Confidence 22110 00000000 0000000001110 01122222222222211110 1112446677778
Q ss_pred hhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002889 525 LTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (870)
Q Consensus 525 Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (870)
++++.+.-++..|++.+..+..-.+ -....+++.+.+.+++.++...++...+...|+.
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 8888888888999999998865544 4567788899999999999876554444444443
No 38
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=94.43 E-value=0.2 Score=47.74 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=73.1
Q ss_pred CCeeEEEEeCC-CCCceeccceEE---EEEEe----CCC-cceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCC
Q 002889 14 MQRVKVYRLND-DGKWDDQGTGHV---TVDSM----ERS-EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDP 84 (870)
Q Consensus 14 ~~RVKVY~L~~-~~~W~D~GTG~~---s~~~~----e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~ 84 (870)
.-||-||.-++ .+.|.-.|.|-+ ++-++ +.. ....|+.+.-.+...+++..|.++-.|.+---+.-.|.+.
T Consensus 17 ~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~~ 96 (126)
T 2jp2_A 17 RVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVD 96 (126)
T ss_dssp EEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEECS
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEEcC
Confidence 45888888854 567999998863 33333 222 3345555665688899999999999999999999999998
Q ss_pred CccccccccccCccchhHHHHHHHHH
Q 002889 85 EYSTELALSFQEPTGCSYIWDNICNV 110 (870)
Q Consensus 85 ~~g~DlALSFQe~~GC~~IW~~I~~V 110 (870)
+ +=++|.|+..+-+....+.+.+.
T Consensus 97 ~--~~~GLnF~se~eA~~F~~~v~~a 120 (126)
T 2jp2_A 97 N--RKFGLTFQSPADARAFDRGVRKA 120 (126)
T ss_dssp S--SEEEEEESSHHHHHHHHHHHHHH
T ss_pred C--EEEEEecCCHHHHHHHHHHHHHH
Confidence 6 44999999999998877766554
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.20 E-value=1.5 Score=48.41 Aligned_cols=184 Identities=11% Similarity=0.119 Sum_probs=125.7
Q ss_pred HHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 356 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 356 Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
.+..|.++.+-..|+++++.+|..|+..|..+..+++. |..++.. .-.+..|++.|-...++.++.....+|+.|-
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~--~~~~~~~--~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRS--PQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--HHHHHTC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc--HHHHHhC--cchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887764 3334432 1245667777766668888888888988874
Q ss_pred CCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHh
Q 002889 436 DSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL 514 (870)
Q Consensus 436 Dp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il 514 (870)
... +.-..+.+ ..++.|++-|.+ ..+.+....+..|..+...+.. .+..+.
T Consensus 89 ~~~--------~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~i~ 140 (529)
T 1jdh_A 89 HHR--------EGLLAIFKSGGIPALVKMLGS-------------------PVDSVLFYAITTLHNLLLHQEG-AKMAVR 140 (529)
T ss_dssp TSH--------HHHHHHHHTTHHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred cCc--------hhHHHHHHcCCHHHHHHHHcC-------------------CCHHHHHHHHHHHHHHhcCCcc-hHHHHH
Confidence 321 12222333 345555554321 1234556677777777666543 356677
Q ss_pred hhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHh
Q 002889 515 LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN 572 (870)
Q Consensus 515 ~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~n 572 (870)
..+.+..++.++++.+.-++-.|.+.++.+.. .++-....+++.+.+.+++.++...
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~~~~~~~~i~~~~~i~~L~~ll~~~ 197 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 197 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHHhC
Confidence 78899999999998887777788888886654 4455677888889999999987643
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.78 E-value=4.5 Score=48.47 Aligned_cols=212 Identities=12% Similarity=0.152 Sum_probs=132.2
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+..+...|.+++ .+.|+-++.+|+- ..+ ..+..|.++.|-..|.+++..+|..|+..|..+..
T Consensus 117 i~~lv~~L~~~~--~~~r~~a~~~l~~----------~~~-----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 117 HPTNVQRLAEPS--QMLKHAVVNLINY----------QDD-----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp ---------CCS--CHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcc--HHHHHHHHHHHHh----------hhH-----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 555666676664 3556666655541 122 23457889999899999999999999999999888
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 468 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~-~~~~~L~~pL~~~~ 468 (870)
+++. +..+.. ..-.+..|++.|-.+.++.++...+.+|+.|--.. .....+.+ ..++.|+.-|.+
T Consensus 180 ~~~~--~~~i~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--------~~~~~i~~~g~I~~Lv~lL~~-- 245 (780)
T 2z6g_A 180 KEAS--RHAIMR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--------EGLLAIFKSGGIPALVNMLGS-- 245 (780)
T ss_dssp SHHH--HHHHTT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--------HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChh--HHHHHh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--------hhHHHHHHcCCHHHHHHHHcC--
Confidence 7654 222322 12367778888876678888888888888864221 11222222 345555543321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002889 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (870)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lk 548 (870)
..+.+....+..|..+...+. ..+..+....++..++.++++.+.-++-.|+.+++.+. ..
T Consensus 246 -----------------~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La-~~ 306 (780)
T 2z6g_A 246 -----------------PVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA-YG 306 (780)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH-TT
T ss_pred -----------------CCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-cC
Confidence 123445566666666666543 35666777889999999998877666667777887544 44
Q ss_pred hhHHHHHHHhcCChHHHHHHHHH
Q 002889 549 DEHLINHFVKNNLLKPIVDAFVA 571 (870)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~~ 571 (870)
++-....++..+.+.+++.++..
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCHHHHHHHHhc
Confidence 44456677888889999987753
No 41
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=93.75 E-value=0.23 Score=46.64 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=73.1
Q ss_pred CCCeeEEEEeCC-CCCceeccceEEE---EEEe----CCC-cceeEEEEecCCCcceeEeecCCCCccccccCeEEEecC
Q 002889 13 PMQRVKVYRLND-DGKWDDQGTGHVT---VDSM----ERS-EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRD 83 (870)
Q Consensus 13 ~~~RVKVY~L~~-~~~W~D~GTG~~s---~~~~----e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte 83 (870)
..-|+.||.-++ .+.|.-.|.|-++ +.+. +.. ....|+.+.-.+...++++.|.++-.|.+.-.+.-.|.+
T Consensus 7 ~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~ 86 (118)
T 1xod_A 7 ARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWRI 86 (118)
T ss_dssp EEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEE
T ss_pred EEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcceEEEe
Confidence 345888888854 6789999988643 3333 122 234455555568889999999999999999999999999
Q ss_pred CCccccccccccCccchhHHHHHHHHHh
Q 002889 84 PEYSTELALSFQEPTGCSYIWDNICNVQ 111 (870)
Q Consensus 84 ~~~g~DlALSFQe~~GC~~IW~~I~~VQ 111 (870)
.+ +=++|.|+..+-+....+.+.+.-
T Consensus 87 ~~--~~~GL~F~se~eA~~F~~~v~~al 112 (118)
T 1xod_A 87 GD--KKFGLTFQSPADARAFDRGIRRAI 112 (118)
T ss_dssp TT--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--EEEEEecCCHHHHHHHHHHHHHHH
Confidence 85 559999999999998877776554
No 42
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.71 E-value=1.2 Score=47.09 Aligned_cols=151 Identities=14% Similarity=0.133 Sum_probs=103.9
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 002889 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (870)
Q Consensus 358 ~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 437 (870)
..+.|.++...|.+.|..++..+.=+|=-++..=|..+|.-+++. +|..+|+.+ .+.|..+..-.+.+|++||..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~----~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER----HLDVFINAL-SQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH----HHHHHHHTC-CSTTHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH----HHHHHHHHH-hccchhHHHHHHHHHHHHHcC
Confidence 345677788888888888888777777667766555555544442 677777755 788999999999999999998
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhh
Q 002889 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (870)
Q Consensus 438 ~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~n 517 (870)
.+++.. =|.+.++.|..-+.+ ...-+..++.|.|.=. |---....
T Consensus 106 vpL~~~--------~y~Kl~~aL~dlik~-------------------~~~il~~eaae~Lgkl--------kv~~~~~~ 150 (265)
T 3b2a_A 106 VPMGSK--------TFLKAAKTLVSLLES-------------------PDDMMRIETIDVLSKL--------QPLEDSKL 150 (265)
T ss_dssp CCBCHH--------HHHHHHHHHHHHTTS-------------------CCHHHHHHHHHHHHHC--------CBSCCCHH
T ss_pred CCCCHH--------HHHHHHHHHHHHhcC-------------------CCchHHHHHHHHhCcC--------CcccchHH
Confidence 887532 134444444433321 1223445666666554 11112345
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002889 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (870)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lk 548 (870)
+...+..|+.+++..++.+|+|++..+-+.-
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 7778889999999999999999999998754
No 43
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.65 E-value=1.1 Score=53.00 Aligned_cols=191 Identities=15% Similarity=0.159 Sum_probs=119.1
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 002889 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (870)
Q Consensus 354 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 433 (870)
.++.+..++++|+. |+++|+..|..|+-.|..+++ ||++.+- +.++. .+..++..+++|.+..++.+...+||.
T Consensus 29 ~~~~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~-~~~~~~l-~~~~~---~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 29 AKLREDKILPVLKD-LKSPDAKSRTTAAGAIANIVQ-DAKCRKL-LLREQ---VVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HHHHHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT-SHHHHHH-HHHTT---HHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc-CcHHHHH-HHHcC---CHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45667789999987 899999999999999999995 8986554 44432 555677788899999999999999999
Q ss_pred hcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCccc----CCcHHHHHHHHHHHHHHHhhccch
Q 002889 434 LLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVE----STKPEILSNICELLCFCVLHHPYR 508 (870)
Q Consensus 434 LLDp~~m~~~e~d~FL~~FY~~~-~~~L~~pL~~~~p~e~~~~~~~~~~~~~----~~~~~ll~~l~ELL~FcV~~H~yr 508 (870)
|---+ ..++..+.|..- +.-|..-|-... +............. ..-..+..+++-+|.... +++-.
T Consensus 103 L~~~~------g~d~~~~l~~~~il~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~-e~s~~ 173 (684)
T 4gmo_A 103 LAQEE------EADFCVHLYRLDVLTAIEHAAKAVL--ETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLA-LARDE 173 (684)
T ss_dssp HHHHS------CHHHHHHHHHTTHHHHHHHHHHHHH--HHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHH-HHCHH
T ss_pred HHhhc------CchHHHHHHHcChHHHHHHHHHhhH--HHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHH-hCCHH
Confidence 85222 124555555543 333332221100 00000000000000 000112345555554433 45555
Q ss_pred hhhHHhhhhHHHHHHHhhhccch---hhHHHHHHHHHHHhcCchhHHHHHHHhcC
Q 002889 509 IKCNFLLNNVVDKVLLLTRRREK---YLVVAAVRFVRTILSRHDEHLINHFVKNN 560 (870)
Q Consensus 509 iK~~il~~nll~rVl~Ll~~~~K---~L~LaAlRFlR~iI~lkDefy~ryiIk~n 560 (870)
+...|...+.+..++.++...++ -++.+|+.|+.++..-+++|. +.+..+.
T Consensus 174 ~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~-~~i~~~~ 227 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVG-QAITDDQ 227 (684)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHTCC
T ss_pred HHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHH-HHHHhcc
Confidence 66667778888888877654443 488999999999988888764 4454444
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.47 E-value=6.6 Score=42.13 Aligned_cols=210 Identities=8% Similarity=0.073 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhccChHhHHHHHHHHHh----------------
Q 002889 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKSLQMVQQLRLFRDLMN---------------- 358 (870)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~l------------sK~LQ~~~R~~lf~~Lv~---------------- 358 (870)
+.|+..|+.++.+.+.+..-|.-+...|+.+..- -..+....|..+-..|+.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i 113 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHH
Confidence 6677777777776655666677677777776521 123444444333222211
Q ss_pred -------------cCcHHHHHHHHcCC--CcchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccC-Ch
Q 002889 359 -------------EGIFDIVTDALQSQ--DKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDF-GE 421 (870)
Q Consensus 359 -------------~GL~~vi~~~L~~~--d~~ir~~atDILv~iiehd-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~-d~ 421 (870)
.++++.+-..+.++ +..+|..|..+|..+.+.- |..+..++ ..++..++..|-.+. ++
T Consensus 114 ~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-----NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-----HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-----HHHHHHHHHHhCCCCCCH
Confidence 12445455555555 5556666666666555432 32211111 124555555443332 67
Q ss_pred hHHHHHHHHHHHhcCCCCCCch-hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH
Q 002889 422 DMHCQFLEILRSLLDSYTLSGA-QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 500 (870)
Q Consensus 422 glk~Ql~eaLk~LLDp~~m~~~-e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 500 (870)
.++.....++..++.- .... ....+. . .++..+..... .....+-..+|+.|.-
T Consensus 189 ~vr~~a~~~l~~~~~~--~~~~~~~~~~~-----~---~l~~~l~~~~~---------------~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 189 NVKLAATNALLNSLEF--TKANFDKESER-----H---FIMQVVCEATQ---------------CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHHHHTTT--THHHHTSHHHH-----H---HHHHHHHHHTT---------------CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhHHH-----H---HHHHHHHHhcC---------------CCCHHHHHHHHHHHHH
Confidence 7777777777776532 1000 000111 1 12222222110 0123455667888888
Q ss_pred HHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002889 501 CVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (870)
Q Consensus 501 cV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l 547 (870)
++..++..++.|+-. .++.-++..++..+.-++..|+.|+.++...
T Consensus 244 l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 888887766665433 6777777778888888999999999888754
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.00 E-value=5.3 Score=48.66 Aligned_cols=245 Identities=13% Similarity=0.084 Sum_probs=150.1
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-------------hcc-------ChHhHHHHH----HHHHhcC
Q 002889 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-------------KSL-------QMVQQLRLF----RDLMNEG 360 (870)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-------------K~L-------Q~~~R~~lf----~~Lv~~G 360 (870)
.+..+++.|+..+++++. .-...+..-|..++.-. +.. .+-....+- +.+++.|
T Consensus 418 ~d~g~Ip~LV~LL~s~d~--~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 418 EDKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HCHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HccchHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 356799999999986543 34555555555544311 000 111222233 5788999
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 440 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 440 (870)
.++.+-..|.++++.++..++-+|..|.. |+. .|..++++... ..|+.+| .+.+...+.+...+|-.|.-..+
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~-~r~~Vv~~Gai---p~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~- 568 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKE-LRGKVVQEGGV---KALLRMA-LEGTEKGKRHATQALARIGITIN- 568 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH-HHHHHHHTTHH---HHHHHHH-HSSCHHHHHHHHHHHHHHHHHSC-
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH-HHHHHHHCCCH---HHHHHHH-ccCCHHHHHHHHHHHHHHhcCCC-
Confidence 99999999999999999999999999984 555 68888887543 3344444 34556667777778776652111
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHH
Q 002889 441 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVD 520 (870)
Q Consensus 441 ~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~ 520 (870)
++ ..|+...+...+.||......+. ........+--|+.+.... -..+..++....+.
T Consensus 569 --p~-----~~~~~~~~~~aIppLv~LL~~~~--------------~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~ 626 (810)
T 3now_A 569 --PE-----VSFSGQRSLDVIRPLLNLLQQDC--------------TALENFESLMALTNLASMN-ESVRQRIIKEQGVS 626 (810)
T ss_dssp --HH-----HHTTTHHHHHTHHHHHHTTSTTS--------------CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHH
T ss_pred --hh-----hhhcchhhhcHHHHHHHHhCCCC--------------cHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Confidence 10 11221111224566665421100 0001112344555555443 23455688888999
Q ss_pred HHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHH
Q 002889 521 KVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAV 583 (870)
Q Consensus 521 rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~ 583 (870)
++..|+.+.+.-++-+|++++.+++.- ++...+++...+.+.+++.++.. +..+.--.||
T Consensus 627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa 686 (810)
T 3now_A 627 KIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCED--EDEETATACA 686 (810)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGC--SSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcC--CCHHHHHHHH
Confidence 999999999999999999999999874 44444444236888888876643 2334444444
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.83 E-value=4.5 Score=40.58 Aligned_cols=193 Identities=9% Similarity=0.146 Sum_probs=122.5
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc-CCCcchhhhhhHHHHHHHhcC
Q 002889 313 LFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILILFLNQD 391 (870)
Q Consensus 313 LF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~-~~d~~ir~~atDILv~iiehd 391 (870)
++..+.+ .+-..|+.++.-|..++.-...+.... |. .+++++...|. +.+..+|..|+..|..+...=
T Consensus 20 l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~----~~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 20 FYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGE----YG-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp HHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCC----CH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCC----HH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 5555654 345788899988888877532222111 11 34566777884 999999999999998887432
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCc
Q 002889 392 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE 471 (870)
Q Consensus 392 P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e 471 (870)
...+..|+ ..++..|++. +.|....++....++|+.++...+ ++..++.|+.-|..
T Consensus 89 ~~~~~~~~-----~~ilp~ll~~-l~d~~~~vr~~a~~aL~~~~~~~~-------------~~~ll~~l~~~l~~----- 144 (242)
T 2qk2_A 89 AKRFSNYA-----SACVPSLLEK-FKEKKPNVVTALREAIDAIYASTS-------------LEAQQESIVESLSN----- 144 (242)
T ss_dssp GGGGHHHH-----HHHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTSC-------------HHHHHHHHHHHTTC-----
T ss_pred hhhHHHHH-----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcC-----
Confidence 21222222 2255555554 367888999999999999976432 23334444332211
Q ss_pred ccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccch--hhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc-Cc
Q 002889 472 GIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR--IKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS-RH 548 (870)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yr--iK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~-lk 548 (870)
..+.+-..++.+|.-|+..|.-. ...++ ..++..+..++...+.-++-+|..++-.+.. ..
T Consensus 145 --------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 145 --------------KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp --------------SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred --------------CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 13345567788888888887422 23333 4688888899988888899999998888542 34
Q ss_pred hhHHHHHH
Q 002889 549 DEHLINHF 556 (870)
Q Consensus 549 Defy~ryi 556 (870)
.+.+..|+
T Consensus 209 ~~~~~~~l 216 (242)
T 2qk2_A 209 DKAVTPLL 216 (242)
T ss_dssp HHHHGGGG
T ss_pred HHHHHHHH
Confidence 44455444
No 47
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.70 E-value=1.7 Score=46.79 Aligned_cols=210 Identities=13% Similarity=0.102 Sum_probs=119.1
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK-~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ 386 (870)
.+++-+...+.+++.+..-|..++.-|..++.+.+ +.... .+..+ +++++...+.+++..+|..++.+|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~~----l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SERHF----IMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH----HHHHH----HHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 35556666677765456677778777666554332 11111 12222 46666677788999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC-------------CCc-hhhhHHHHHH
Q 002889 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-------------LSG-AQRDTIIEIF 452 (870)
Q Consensus 387 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~-------------m~~-~e~d~FL~~F 452 (870)
+++..|..++.|+.+ .++..++..+ .+.+..++.+.++.+..+.+... ... ...-.++.-+
T Consensus 244 l~~~~~~~~~~~~~~----~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP----ALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHCGGGCTTTTTT----THHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 999988766655421 4666655544 67888999888888877764320 000 0011233333
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchh
Q 002889 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (870)
Q Consensus 453 Y~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 532 (870)
....++.|++-+... .+.. . .....++ ...++.|..++..-+ + .+ ...++..+..+++..+-.
T Consensus 319 ~~~l~p~l~~~l~~~--d~d~--~-~~~~~~r-------~~a~~~L~~l~~~~~---~-~~-~~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQ--DEND--D-DDDWNPC-------KAAGVCLMLLATCCE---D-DI-VPHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp HHHHHHHHHHHTTCC--CSSC--C-TTCCSHH-------HHHHHHHHHHHHHTT---T-TH-HHHHHHHHHHHTTCSSHH
T ss_pred hhhccHHHHHHHHhc--cccc--c-cccchHH-------HHHHHHHHHHHHhcc---H-HH-HHHHHHHHHHHhcCCChH
Confidence 344444444433221 0000 0 0111122 122333333333322 1 11 235667777788888888
Q ss_pred hHHHHHHHHHHHhcC
Q 002889 533 LVVAAVRFVRTILSR 547 (870)
Q Consensus 533 L~LaAlRFlR~iI~l 547 (870)
.+-+|+.++..+..-
T Consensus 382 ~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 382 YRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 48
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=92.34 E-value=0.61 Score=46.53 Aligned_cols=95 Identities=12% Similarity=0.263 Sum_probs=77.2
Q ss_pred eEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccccccC
Q 002889 17 VKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQE 96 (870)
Q Consensus 17 VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe 96 (870)
|.||.-..++.|.-.++|-+.....-......|-+.+-.++..+.+..|-.+=.|++......+|.+. ++=++|+|.+
T Consensus 65 aqLy~a~~~~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~~~~vvweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFad 142 (169)
T 2ifs_A 65 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFAN 142 (169)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTCCCCEEEECCSSCCCBCCCSSEEEEECS--SSEEEEECSC
T ss_pred EEEEEECCCCeeEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEeecC--CcEEEEeeCC
Confidence 78999866679999999987655432234566778888888899999999999999999999999754 4679999999
Q ss_pred ccchhHHHHHHHHHhhc
Q 002889 97 PTGCSYIWDNICNVQRN 113 (870)
Q Consensus 97 ~~GC~~IW~~I~~VQ~~ 113 (870)
.+-+......|++-..+
T Consensus 143 e~EA~~F~~~V~~~l~~ 159 (169)
T 2ifs_A 143 EEEAKKFRKAVTDLLGR 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888776543
No 49
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=92.29 E-value=0.62 Score=45.72 Aligned_cols=95 Identities=12% Similarity=0.263 Sum_probs=77.1
Q ss_pred eEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccccccC
Q 002889 17 VKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQE 96 (870)
Q Consensus 17 VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe 96 (870)
|.||.-..++.|.-.++|-+.....-......|-+.+-.++..+.+..|-.+=.|++......+|... +.=++|+|.+
T Consensus 48 aqLy~a~~~~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~~~~viweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFad 125 (152)
T 1mke_A 48 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFAN 125 (152)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECS--SSEEEEEESS
T ss_pred EEEEEECCCCceEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEEecC--CcEEEEeeCC
Confidence 78999866679999999987655432234566778888888899999999999999999999999764 4679999999
Q ss_pred ccchhHHHHHHHHHhhc
Q 002889 97 PTGCSYIWDNICNVQRN 113 (870)
Q Consensus 97 ~~GC~~IW~~I~~VQ~~ 113 (870)
.+-+......|.+-..+
T Consensus 126 e~EA~~F~~~V~~~l~~ 142 (152)
T 1mke_A 126 EEEAKKFRKAVTDLLGR 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888776543
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.26 E-value=9.5 Score=44.71 Aligned_cols=242 Identities=12% Similarity=0.055 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhc-cChHhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 002889 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKS-LQMVQQLRLFRDLMNEGIFDIVTDALQSQD 373 (870)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~l------------sK~-LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d 373 (870)
+.|+.-|..++.+.+.+..-|.-+...|+.++.. -.. +....|..+-..| -.+|.+++
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~l---------l~~l~~~~ 108 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNA---------LTALVSIE 108 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHH---------HHHHTCSS
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHH---------HHHHCCCc
Confidence 7888888888887666666677777777765421 011 4444444333222 22467788
Q ss_pred cchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 002889 374 KKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF 452 (870)
Q Consensus 374 ~~ir~~atDILv~iiehd-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~F 452 (870)
..+|..++.+|..|..++ |. ..-..++..|++.+-.+.++.++...+.+|..+++.-. ...+ .
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~--------~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~--~~~~------~ 172 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH--------GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD--PQSQ------A 172 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG--------TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS--TTSS------T
T ss_pred hHHHHHHHHHHHHHHHhhCcc--------cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--hhhh------H
Confidence 899999999998887765 31 11123666666655433377777777778877775311 1011 0
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchh
Q 002889 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (870)
Q Consensus 453 Y~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 532 (870)
...+++.++..+....... + ..+.+-...++.|+-|+..=...+......+.++.-+..++...+.-
T Consensus 173 ~~~~~~~ll~~l~~~l~~~----~---------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 173 LVSSSNNILIAIVQGAQST----E---------TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp TGGGHHHHHHHHHHHHSTT----C---------CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHhhcCC----C---------CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 1233444444443321000 0 01223334445555443210000000001122445555667777778
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002889 533 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (870)
Q Consensus 533 L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefI 590 (870)
++.+|++++..++....+++..|+.+ .++..++..+ .+.+.-+-.++++++..+
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~---~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATM---KSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHT---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---cCCcHHHHHHHHHHHHHH
Confidence 88899999999887766655555543 4444444332 234444555666666544
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.97 E-value=23 Score=41.48 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=127.5
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls-K~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ 386 (870)
.++.-+...+.+++.+.+-|..++.-|..++... .++... .++ ..+++++..++.+++..+|..+++.|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~----~~il~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SER----HFIMQVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH----HHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhH----HHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4555566667766545666777777776665432 122211 111 1256677777788899999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC------------ch--hhhHHHHHH
Q 002889 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS------------GA--QRDTIIEIF 452 (870)
Q Consensus 387 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~------------~~--e~d~FL~~F 452 (870)
++...|..+..++. ..++..++..+ .+.++.++.+.++.+..+.+..... .+ ....++.-+
T Consensus 244 l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 244 IMSLYYQYMETYMG----PALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHSGGGCHHHHT----TTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHhHHHHHHHHH----HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 99999988877763 23666666654 5677888888888888776432100 00 001222222
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchh
Q 002889 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (870)
Q Consensus 453 Y~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 532 (870)
+ ..++.+++....... .........++......+..+++ +... .+ -..++..+...+...+-.
T Consensus 319 ~----~~ll~~ll~~l~~~~-~d~~~~~~~~r~~a~~~l~~l~~----~~~~-------~~-~~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 319 L----QYLVPILTQTLTKQD-ENDDDDDWNPCKAAGVCLMLLAT----CCED-------DI-VPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp H----HHHHHHHHHHTTCCC-SSCCTTCCCHHHHHHHHHHHHHH----HHGG-------GG-HHHHHHHHHHHTTCSSHH
T ss_pred H----HHHhHHHHHHhhccc-ccccccccHHHHHHHHHHHHHHH----HCcH-------hh-HHHHHHHHHHHccCCChH
Confidence 3 334444433221100 00000111122111222222222 2221 11 234666666777778888
Q ss_pred hHHHHHHHHHHHhcCch-hHHHHHHHhcCChHHHHHHH
Q 002889 533 LVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAF 569 (870)
Q Consensus 533 L~LaAlRFlR~iI~lkD-efy~ryiIk~nLf~PIl~~f 569 (870)
.+-+|++.+..+..--. +.+..|+ ..++..++..+
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l 417 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence 89999999998775433 4444554 23566666665
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.72 E-value=5.2 Score=42.65 Aligned_cols=183 Identities=10% Similarity=0.120 Sum_probs=119.8
Q ss_pred hhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh
Q 002889 376 LVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK 455 (870)
Q Consensus 376 ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~ 455 (870)
-|..|.++|..+++... .-+.+ .+..+ +..|+..++...++.++.+.+.+|..+..... ..++.+++. .
T Consensus 56 ~k~~Al~~L~~lv~~~d-na~~~-~~~G~---l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~---~~~~~vv~~---g 124 (296)
T 1xqr_A 56 EREGALELLADLCENMD-NAADF-CQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---AIQEQVLGL---G 124 (296)
T ss_dssp HHHHHHHHHHHHHTSHH-HHHHH-HHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHhChh-hHHHH-HHcCC---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHC---C
Confidence 46778899999988544 33433 33332 23456645677899999999999998864211 123333321 4
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHH
Q 002889 456 HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVV 535 (870)
Q Consensus 456 ~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~L 535 (870)
.++.|++-|... + ...+....+--|+-++++++..... |...+.+.-++.++++.+.-++.
T Consensus 125 ~l~~Ll~LL~~~-~-----------------~~~v~~~A~~ALsnl~~~~~~~~~~-~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 125 ALRKLLRLLDRD-A-----------------CDTVRVKALFAISCLVREQEAGLLQ-FLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHHHHHHHHHC-S-----------------CHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHccC-C-----------------CHHHHHHHHHHHHHHHcCCcHHHHH-HHHCCCHHHHHHHHcCCCHHHHH
Confidence 567777655431 0 1234456677777778877765554 44567888888999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002889 536 AAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (870)
Q Consensus 536 aAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~ 592 (870)
.|+..+..+..-. .-..+++++.+.+.|++.++... +.=+--.++..+..|-+
T Consensus 186 ~A~~aLs~L~~~~-~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 186 KSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-hHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHh
Confidence 9999999987654 44788999999999999987433 23333344444444433
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.45 E-value=15 Score=42.68 Aligned_cols=175 Identities=14% Similarity=0.235 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 002889 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 441 (870)
Q Consensus 362 ~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 441 (870)
.+.+...|.+.|+.+|..|.+.|..++.++|..+..+. .. +-..+.+.|..++....++|..|.+..|..
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~---------~~-i~~~l~d~d~~Ir~~alelL~~l~~~~nv~ 384 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR---------ST-IVDCLKDLDVSIKRRAMELSFALVNGNNIR 384 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH---------HH-HHHGGGSSCHHHHHHHHHHHHHHCCSSSTH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH---------HH-HHHHccCCChhHHHHHHHHHHHHcccccHH
Confidence 34444557778888888888888888888887665432 12 223457889999999999999999887742
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHH
Q 002889 442 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 521 (870)
Q Consensus 442 ~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~r 521 (870)
. .+..|..-+.+. ..++-..++.-++-|...++-.... .+..
T Consensus 385 ~-------------iv~eL~~~l~~~-------------------d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ 426 (618)
T 1w63_A 385 G-------------MMKELLYFLDSC-------------------EPEFKADCASGIFLAAEKYAPSKRW------HIDT 426 (618)
T ss_dssp H-------------HHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHSSCCCHHH------HHHH
T ss_pred H-------------HHHHHHHHHHhC-------------------CHHHHHHHHHHHHHHHHHhCccHHH------HHHH
Confidence 1 112222222210 1112223344444444433222211 2344
Q ss_pred HHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh----hChHH
Q 002889 522 VLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK----ENLKS 597 (870)
Q Consensus 522 Vl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~----eNik~ 597 (870)
++.+++....+.+-.++..+|.++.... ++-.+++-.|++++.. +.+..
T Consensus 427 ll~lL~~~~~~v~~~~~~~l~~ii~~~p---------------------------~l~~~~v~~L~~~l~~~~~~~~~~~ 479 (618)
T 1w63_A 427 IMRVLTTAGSYVRDDAVPNLIQLITNSV---------------------------EMHAYTVQRLYKAILGDYSQQPLVQ 479 (618)
T ss_dssp HHHHHHHTGGGSCSSHHHHHHHHHHHSC---------------------------STHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcCh---------------------------hHHHHHHHHHHHHHhcccccHHHHH
Confidence 5555554445555455555555554322 2444555566666664 34445
Q ss_pred HHHHHHHHhHhhcc
Q 002889 598 LVKYIVDSFWNQLV 611 (870)
Q Consensus 598 Li~hlVe~y~~~l~ 611 (870)
.+.|++-.|++.+.
T Consensus 480 ~~~wilGEy~~~i~ 493 (618)
T 1w63_A 480 VAAWCIGEYGDLLV 493 (618)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHhc
Confidence 67899999988764
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=91.31 E-value=6.8 Score=47.72 Aligned_cols=200 Identities=8% Similarity=0.064 Sum_probs=121.4
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002889 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (870)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii 388 (870)
.++-|...+.+ +.+...+.+++.=|..++..+ .. .=..+++.|.++.|...|.+.+..++..|+..|..++
T Consensus 581 aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~----d~----~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 581 VIRPLLNLLQQ-DCTALENFESLMALTNLASMN----ES----VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp THHHHHHTTST-TSCHHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCC----HH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45556666653 223334445554444333321 11 2224677899999999999999999999999999888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002889 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (870)
Q Consensus 389 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~ 468 (870)
.++. ....++ ++.--+..|+..+ ...+.+++....-+|..|
T Consensus 652 ~~~~-~~~~~v---~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanL---------------------------------- 692 (810)
T 3now_A 652 MSED-VIKMFE---GNNDRVKFLALLC-EDEDEETATACAGALAII---------------------------------- 692 (810)
T ss_dssp TSHH-HHHHHH---SSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHH----------------------------------
T ss_pred CChH-HHHHHH---hccCcHHHHHHHh-cCCCHHHHHHHHHHHHHH----------------------------------
Confidence 7543 333332 1222333444322 333444443333333222
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhh-hhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002889 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL-NNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (870)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~-~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l 547 (870)
...+.--++ .++. .+.+..+..|+.+.+--++-.|+..+.+++.-
T Consensus 693 ---------------------------------t~~s~~~~~-~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 693 ---------------------------------TSVSVKCCE-KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp ---------------------------------HHHCHHHHH-HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------hCCCHHHHH-HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 111111122 3444 67778888888888888899999999999875
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002889 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (870)
Q Consensus 548 kDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr 591 (870)
.++ +.++|++.+.+.|+.+++.....+++=+--.+++-++-|-
T Consensus 739 s~e-~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 739 GEE-IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp CHH-HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 554 6899999999999998886654466655555555555443
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.22 E-value=24 Score=40.98 Aligned_cols=211 Identities=12% Similarity=0.129 Sum_probs=118.4
Q ss_pred CcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC
Q 002889 360 GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (870)
Q Consensus 360 GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 439 (870)
.+++.|..+|.+.++.+|.+|+--+..+...+|.+++.+ +..| ..++.|.|++++.....+|..+....
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~---------~~~l-~~lL~D~d~~V~~~Al~~L~~i~~~~- 210 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF---------LPAT-KNLLNEKNHGVLHTSVVLLTEMCERS- 210 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGG---------GGGT-TTSTTCCCHHHHHHHHHHHHHHCCSH-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHH---------HHHH-HHHhCCCCHhHHHHHHHHHHHHHHhC-
Confidence 457788888999999999999999999999999877642 2222 33568899999888888888875321
Q ss_pred CCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhccchhhh---H---
Q 002889 440 LSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKC---N--- 512 (870)
Q Consensus 440 m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~-~~~~~ll~~l~ELL~FcV~~H~yriK~---~--- 512 (870)
+ +. .-.|.++++.|++-|...+.... .+...+. ...+++...++++|.......+.-.+. +
T Consensus 211 ---~---~~-~~~~~~~v~~l~~~L~~~~~~~~-----~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~ 278 (618)
T 1w63_A 211 ---P---DM-LAHFRKLVPQLVRILKNLIMSGY-----SPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQ 278 (618)
T ss_dssp ---H---HH-HHHHHTTHHHHHHHHHHHHHSCC-----CTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHH
T ss_pred ---h---HH-HHHHHHHHHHHHHHHHHHHcCCC-----CccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1 12 23456777877776654210000 0000010 235666677777777766543221100 0
Q ss_pred Hh------------------------------hhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHH-----
Q 002889 513 FL------------------------------LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFV----- 557 (870)
Q Consensus 513 il------------------------------~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiI----- 557 (870)
++ ....+..+..++.+++.-++.+||+-+..++..+-+.+.+|..
T Consensus 279 l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~ 358 (618)
T 1w63_A 279 VATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDC 358 (618)
T ss_dssp HHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHG
T ss_pred HHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 00 0012233445566677777777777777776553332222211
Q ss_pred -hc-C--ChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhC
Q 002889 558 -KN-N--LLKPIVDAFVANGNRYNLLNSAVLELFEYIRKEN 594 (870)
Q Consensus 558 -k~-n--Lf~PIl~~f~~ng~R~NLLnSA~LELfefIr~eN 594 (870)
+. + +=.--++++..-.+..|+ ..-+-||.+|+...+
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~nv-~~iv~eL~~~l~~~d 398 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNNI-RGMMKELLYFLDSCE 398 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSST-HHHHHHHHHHHHHCC
T ss_pred ccCCChhHHHHHHHHHHHHcccccH-HHHHHHHHHHHHhCC
Confidence 00 0 000113344444555663 455666777766543
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=90.76 E-value=30 Score=40.46 Aligned_cols=206 Identities=11% Similarity=0.112 Sum_probs=114.2
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcC----hHHHHHHHHhcCCcchHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQD----PNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv~iiehd----P~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~eaLk~LL 435 (870)
+++.+-.+|+++ +.+|..++..|..+++.- +..+..|+ ..++..|++.+-. +.+..++..+.++|..|.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-----PALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 345555556665 778888888887776542 22232222 1255566665543 444788888899998887
Q ss_pred CCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhh
Q 002889 436 DSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL 515 (870)
Q Consensus 436 Dp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~ 515 (870)
..... + ..-++...++.+++-|....+.+...... ..+.....+...+++.|..+++.-.-.+..| .
T Consensus 529 ~~~~~---~----~~~~~~~l~~~l~~~l~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~ 595 (861)
T 2bpt_A 529 EYATD---T----VAETSASISTFVMDKLGQTMSVDENQLTL----EDAQSLQELQSNILTVLAAVIRKSPSSVEPV--A 595 (861)
T ss_dssp HHCCG---G----GHHHHHHHHHHHHHHHHHHTTSCGGGCCH----HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--H
T ss_pred HHcch---h----hHHHHHHHHHHHHHHHHHHHhhhcccCCh----hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--H
Confidence 54321 1 12234445555555554321110000000 0001123455778888888887766545443 3
Q ss_pred hhHHHHHHHhhhccch-hhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002889 516 NNVVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (870)
Q Consensus 516 ~nll~rVl~Ll~~~~K-~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefI 590 (870)
..++..++.+++..+. .++-.|+.++.+++..-.+-+..|+-+ ++.+++..+ +.+.++ +-.++++++..|
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l--~~~~~~-vr~~a~~~l~~l 666 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKAL--NQVDSP-VSITAVGFIADI 666 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHH--HCTTSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHh--ccccHH-HHHHHHHHHHHH
Confidence 4688888888887766 788888988888765433334455543 555666666 223333 344445555443
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.73 E-value=18 Score=42.54 Aligned_cols=239 Identities=12% Similarity=0.081 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh------------hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCc
Q 002889 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS------------KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDK 374 (870)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~ls------------K~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~ 374 (870)
+.|+.-|+..+.+.+.+...|.-+...|+.++... ..+.+..|..+-. .+-.+|.+++.
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~---------~ll~~l~~~~~ 104 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKN---------YVLHTLGTETY 104 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHH---------HHHHHTTTCCS
T ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHH---------HHHHHhCCCcH
Confidence 67888888888876666677777777888765210 1233333332222 22234677888
Q ss_pred chhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccC--ChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 002889 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF--GEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF 452 (870)
Q Consensus 375 ~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~--d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~F 452 (870)
.+ ..++.++..+..++- ....-..++..|+..+ .+. ++.++...+.+|..++..-. ++ .
T Consensus 105 ~~-~~~~~~l~~i~~~~~-------~~~~w~~ll~~l~~~l-~~~~~~~~~r~~al~~l~~l~~~~~---~~---~---- 165 (876)
T 1qgr_A 105 RP-SSASQCVAGIACAEI-------PVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGYICQDID---PE---Q---- 165 (876)
T ss_dssp SS-CHHHHHHHHHHHHHG-------GGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHSC---HH---H----
T ss_pred HH-HHHHHHHHHHHHhhC-------cccccHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHhcC---Hh---h----
Confidence 88 888899888876541 1111234667777655 444 77787777788777764211 11 1
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchh
Q 002889 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (870)
Q Consensus 453 Y~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 532 (870)
+..+++.++..+....... . ....+-...++.|+-++..-.-.+......+.++.-+..++...+.-
T Consensus 166 ~~~~~~~ll~~l~~~l~~~----~---------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 232 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKE----E---------PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTT----C---------SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHhHHHHHHHHHHHhhcCC----C---------CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHH
Confidence 3455666666655421100 0 01122223444444444321111111111223555556666666777
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002889 533 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (870)
Q Consensus 533 L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefI 590 (870)
++.+|++++-.++...-.++..|+. ..++..++..+ .+.+--+-.++++++..+
T Consensus 233 vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~---~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 233 VRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAM---KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHH---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHh---cCCchHHHHHHHHHHHHH
Confidence 8889999999999876666666653 46677666654 233333444555555444
No 58
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=90.16 E-value=8.1 Score=42.14 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=135.2
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc-ChHHHHHHH
Q 002889 323 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYV 399 (870)
Q Consensus 323 ~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv--~~GL~~vi~~~L~~~d~~ir~~atDILv~iieh-dP~lvR~~i 399 (870)
+.+-++.+..-|..+|.-. ... +..+ ..|.++.+-..|.+++..++..++-.|..+... ++. .|..+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~----~~~-----k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i 166 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGD----VAN-----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTL 166 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSC----HHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC----HHH-----HHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHH
Confidence 3455777777777655321 112 3333 468899999999999999999999999988876 444 56666
Q ss_pred HhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCC
Q 002889 400 VRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASS 479 (870)
Q Consensus 400 ~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~ 479 (870)
.+.. -+..|++.|....+.+++.....+|..|--- ....|..+.. -...++.|++-|....+.
T Consensus 167 ~~~G---~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~---~~~nk~~i~~--~~Gai~~Lv~lL~~~~~~--------- 229 (354)
T 3nmw_A 167 REVG---SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICA--VDGALAFLVGTLTYRSQT--------- 229 (354)
T ss_dssp HHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT---CHHHHHHHHH--STTHHHHHHHHTTCCCSS---------
T ss_pred HHCC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---ChhhhHHHHH--hcCcHHHHHHHhccCCCc---------
Confidence 5433 3456777777767888888888888877320 1111222211 234567777766432110
Q ss_pred CCcccCCcHHHHHHHHHHHHHHH----hhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHH
Q 002889 480 GGRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINH 555 (870)
Q Consensus 480 ~~~~~~~~~~ll~~l~ELL~FcV----~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ry 555 (870)
...++....+=.|..+. .... .+..+...+.+..++.|+++...-++-.|++.++.+... +.-....
T Consensus 230 ------~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~ 300 (354)
T 3nmw_A 230 ------NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEA 300 (354)
T ss_dssp ------SCCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHHhhccCCHH--HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 00012122222222221 1222 345678888999999999988888999999999998754 4456789
Q ss_pred HHhcCChHHHHHHHH
Q 002889 556 FVKNNLLKPIVDAFV 570 (870)
Q Consensus 556 iIk~nLf~PIl~~f~ 570 (870)
|++.+.+.|+++++.
T Consensus 301 i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIH 315 (354)
T ss_dssp HHHTTHHHHHHTTTT
T ss_pred HHHCCCHHHHHHHHh
Confidence 999999999998764
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.66 E-value=15 Score=44.65 Aligned_cols=263 Identities=10% Similarity=0.143 Sum_probs=148.0
Q ss_pred HHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccC-----------------hH--------h---HHHH
Q 002889 301 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQ-----------------MV--------Q---QLRL 352 (870)
Q Consensus 301 ~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ-----------------~~--------~---R~~l 352 (870)
..|-+|..||..|+..++++.. ..--..++.-|..|++...+++ |. . ...-
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence 3566678899999999985221 1123344444444443222211 10 0 1112
Q ss_pred --HHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChh--HHHHHH
Q 002889 353 --FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED--MHCQFL 428 (870)
Q Consensus 353 --f~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~g--lk~Ql~ 428 (870)
-+.+++.|..+.+-..+++.++.+|..++-+|..+... +. .|..+++|.+ +..|+..+....+.+ .+....
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~-~R~~lvqqGa---l~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN-FIPQLAQQGA---VKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG-GHHHHHHTTH---HHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCC---HHHHHHHHhcCCCcchHHHHHHH
Confidence 24577999999999999999999999999999998744 55 4888887743 223333333332221 343444
Q ss_pred HHHHHhc-------------------------CC--CCCC--------ch--hh-h-----------------HHHHHHH
Q 002889 429 EILRSLL-------------------------DS--YTLS--------GA--QR-D-----------------TIIEIFY 453 (870)
Q Consensus 429 eaLk~LL-------------------------Dp--~~m~--------~~--e~-d-----------------~FL~~FY 453 (870)
.||-.|+ .+ ..-. .+ ++ + +.-...-
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 4443333 21 1000 00 00 0 0000001
Q ss_pred H--hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh-hhHHhhh-hH----HHHHHHh
Q 002889 454 E--KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLN-NV----VDKVLLL 525 (870)
Q Consensus 454 ~--~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yri-K~~il~~-nl----l~rVl~L 525 (870)
. .+++.|...|.+ ....+....||++|-.+. ++--+ +.|+-.. .- +.-++.|
T Consensus 603 ~~~ga~~~L~~LL~s-------------------~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~L 662 (778)
T 3opb_A 603 STKVYWSTIENLMLD-------------------ENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKL 662 (778)
T ss_dssp HSHHHHHHHHHGGGC-------------------SSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHG
T ss_pred HhcCHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHH
Confidence 1 112222222211 123455667888888886 55543 3444322 22 4446678
Q ss_pred hhccchhhHHHHHHHHHHHhcCchhHHHHHHHhc-CChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002889 526 TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (870)
Q Consensus 526 l~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~-nLf~PIl~~f~~ng~R~NLLnSA~LELfefI 590 (870)
+.+.+.-.+-+|.-.+-.+-. .++...+-|++. +.+++++.+|.+.-+..++...++.=|....
T Consensus 663 l~s~D~~~r~AAagALAnLts-~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 663 LQLSDVESQRAVAAIFANIAT-TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp GGCSCHHHHHHHHHHHHHHHH-HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhcC-CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 889888899999988877643 456677888876 7999999999876567778777766555544
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=89.13 E-value=19 Score=40.73 Aligned_cols=211 Identities=12% Similarity=0.064 Sum_probs=135.0
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc-ChHHHHHHHH
Q 002889 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYVV 400 (870)
Q Consensus 324 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv--~~GL~~vi~~~L~~~d~~ir~~atDILv~iieh-dP~lvR~~i~ 400 (870)
..-++.+..-|..+|.-. ... +..+ ..|.++.+-..|.+++..++..++-.|..+... ++. .|..+.
T Consensus 214 ~~l~~~Aa~aL~nLa~~~----~~~-----k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~ 283 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGD----VAN-----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLR 283 (458)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----ccc-----HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Confidence 445777887777766321 112 2333 568899999999999999999999999888775 454 466665
Q ss_pred hcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCC
Q 002889 401 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSG 480 (870)
Q Consensus 401 ~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~ 480 (870)
+.. -+..|++.|+...+.+++.....+|..|-- .....+..+.. -...++.|++-|....+.
T Consensus 284 ~~G---aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~---~~~~nk~~I~~--~~Gal~~Lv~LL~~~~~~---------- 345 (458)
T 3nmz_A 284 EVG---SVKALMECALEVKKESTLKSVLSALWNLSA---HCTENKADICA--VDGALAFLVGTLTYRSQT---------- 345 (458)
T ss_dssp HTT---HHHHHHHHHTTCCSHHHHHHHHHHHHHHHH---HCHHHHHHHHH--STTHHHHHHHHTTCCCSS----------
T ss_pred HcC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHH--hcCcHHHHHHHhcCCCCc----------
Confidence 433 355677777776788888877777777731 00011222221 134566666655331100
Q ss_pred CcccCCcHHHHHHHHHHHHHHH----hhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHH
Q 002889 481 GRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHF 556 (870)
Q Consensus 481 ~~~~~~~~~ll~~l~ELL~FcV----~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryi 556 (870)
...++....+=.|.-+. .... .+..+...+.+..++.||++...-++-.|++.++++... +.-...+|
T Consensus 346 -----~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i 417 (458)
T 3nmz_A 346 -----NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEAL 417 (458)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHhcccCCHH--HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 00012222222222222 2222 245677888999999999988888999999999998754 44467899
Q ss_pred HhcCChHHHHHHHH
Q 002889 557 VKNNLLKPIVDAFV 570 (870)
Q Consensus 557 Ik~nLf~PIl~~f~ 570 (870)
++.+.+.|+++++.
T Consensus 418 ~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 418 WDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHTHHHHHHTTTT
T ss_pred HHCCCHHHHHHHHh
Confidence 99999999998764
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.87 E-value=3.1 Score=48.73 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=52.4
Q ss_pred CcHHHHHHHH--cCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 360 GIFDIVTDAL--QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 360 GL~~vi~~~L--~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
.+.+.|..+| .+.++.||..|+--+..+...+|.+++ ...+++.|.+ ++.|.|+|++...+-+|..+.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-------~~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-------MGDWTSRVVH-LLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-------CCSCHHHHHH-HTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-------chhHHHHHHH-HhCCCCccHHHHHHHHHHHHH
Confidence 4567788888 889999999999999999999998764 1246666665 558999999877666666553
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=87.65 E-value=14 Score=43.87 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhccchhhhHHhhh-hHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHH
Q 002889 489 EILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVD 567 (870)
Q Consensus 489 ~ll~~l~ELL~FcV~~H~yriK~~il~~-nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~ 567 (870)
..-.+.+.+|+..+.+.+-+....|+.. .-+.+++.+|..+...++=.|+-++-.+.. .+.-..+-+.-.|.|+++++
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-SNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHhccHHHHHH
Confidence 3446788999999999999999999977 478999999998889999999999988775 45557778888899999999
Q ss_pred HHHHhCC-CCcchHHHHHHHHHHHHhhCh
Q 002889 568 AFVANGN-RYNLLNSAVLELFEYIRKENL 595 (870)
Q Consensus 568 ~f~~ng~-R~NLLnSA~LELfefIr~eNi 595 (870)
++...|. +..++-+=||.++.-+-+.|.
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9987664 677899999999999998884
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=86.36 E-value=33 Score=38.04 Aligned_cols=208 Identities=14% Similarity=0.131 Sum_probs=130.8
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
++.|...+++++ .+-+..++..|+.+|. + .+..| ..+++.|.++.+-..|+++++.++..|+-.|..+.-
T Consensus 4 l~~lv~~L~s~~--~~~q~~A~~~L~~l~~---~-~~~~~----~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCF---Q-DESAK----QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSC--THHHHHHHHHHHHHTS---S-CSSHH----HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHc---C-ChHHH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 445556665553 3567888888888663 1 12223 256689999999999999999999999999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 469 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p 469 (870)
++|. .|..+++.... ..|++.|-...++.++.+.+.+|..|--.+ ..|..++ +..++.|++-|.....
T Consensus 74 ~~~~-~k~~i~~~G~i---~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~----~g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 74 RSTT-NKLETRRQNGI---REAVSLLRRTGNAEIQKQLTGLLWNLSSTD----ELKEELI----ADALPVLADRVIIPFS 141 (457)
T ss_dssp SCHH-HHHHHHHTTCH---HHHHHHHTTCCCHHHHHHHHHHHHHHHTSS----STHHHHH----HHHHHHHHHHTTHHHH
T ss_pred CCHH-HHHHHHHcCCH---HHHHHHHhhCCCHHHHHHHHHHHHHHhcCH----HhHHHHH----hccHHHHHHHHhcccc
Confidence 7676 46667665543 344555543668899999999998886331 1344343 2667777776632000
Q ss_pred CcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhccchhhhHHhhh-hHHHHHHHhhhc------cchhhHHHHHHHH
Q 002889 470 QEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRR------REKYLVVAAVRFV 541 (870)
Q Consensus 470 ~e~~~~~~~~~~~~~-~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~-nll~rVl~Ll~~------~~K~L~LaAlRFl 541 (870)
. ....... ..+ .....++.+.+-.|..+... + ..+..+... .++..++.+++. .+.-.+-.|+..+
T Consensus 142 ~--~~~~~~~--~~~e~~~~~v~~~a~~aL~nLs~~-~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L 215 (457)
T 1xm9_A 142 G--WCDGNSN--MSREVVDPEVFFNATGCLRNLSSA-D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215 (457)
T ss_dssp T--CC-----------CCCHHHHHHHHHHHHHHTTS-H-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHH
T ss_pred c--cccCccc--hhcccccHHHHHHHHHHHHHHccC-H-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHH
Confidence 0 0000000 000 13456777777777777765 2 355667775 899999988874 2223455667777
Q ss_pred HHHh
Q 002889 542 RTIL 545 (870)
Q Consensus 542 R~iI 545 (870)
|.+.
T Consensus 216 ~nLs 219 (457)
T 1xm9_A 216 HNLS 219 (457)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 7754
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=84.36 E-value=17 Score=39.67 Aligned_cols=227 Identities=14% Similarity=0.124 Sum_probs=134.2
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-----------CCcchhhhhhHHHHHHHhcCh
Q 002889 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDP 392 (870)
Q Consensus 324 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~-----------~d~~ir~~atDILv~iiehdP 392 (870)
...+-.++.+|..++ .. +..|. .+++.|.++.|-..|.. .+..++..|+-+|..+...++
T Consensus 46 ~~~~~~A~~aL~nls---~d--~e~R~----~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~ 116 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS---FD--EEHRH----AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 116 (354)
T ss_dssp GGTHHHHHHHHHHHH---TS--HHHHH----HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred hHHHHHHHHHHHHHc---CC--HHHHH----HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH
Confidence 344556666666543 22 33333 45788999888877742 234578888889988887766
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcc
Q 002889 393 NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG 472 (870)
Q Consensus 393 ~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~ 472 (870)
. .|..+....+ .+..|+++| ...++.++.+...+|+.|-...+ ...|..+. -...++.|++-|....
T Consensus 117 ~-~k~~i~~~~G--aIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~--~~~k~~i~---~~G~Ip~Lv~lL~~~~---- 183 (354)
T 3nmw_A 117 A-NKATLCSMKG--CMRALVAQL-KSESEDLQQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK---- 183 (354)
T ss_dssp H-HHHHHHHCHH--HHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCC--HHHHHHHH---HTTHHHHHHHHHHHCC----
T ss_pred H-HHHHHHHcCC--cHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCC--HHHHHHHH---HCCCHHHHHHHHhcCC----
Confidence 4 2443433222 355666644 46788999999999999954211 11233332 2345788888765421
Q ss_pred cccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHh-hhhHHHHHHHhhhccch----hhHHHHHHHHHHHhc-
Q 002889 473 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS- 546 (870)
Q Consensus 473 ~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il-~~nll~rVl~Ll~~~~K----~L~LaAlRFlR~iI~- 546 (870)
...+....+-.|.-+.. |.-..|.-|. ....+.-++.|++.... -++-.|...+|++-.
T Consensus 184 --------------~~~~~~~A~~aL~nLs~-~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 184 --------------KESTLKSVLSALWNLSA-HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp --------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHHHc-cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 11223333344433333 2222344555 67788888888876543 255566677776543
Q ss_pred --CchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002889 547 --RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (870)
Q Consensus 547 --lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefI 590 (870)
..++ +...+++.+.+.|++.++.. + ...+...|+--|...-
T Consensus 249 ~a~~~~-~~~~i~~~g~i~~Lv~lL~~-~-~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 249 IATNED-HRQILRENNCLQTLLQHLKS-H-SLTIVSNACGTLWNLS 291 (354)
T ss_dssp HTTCHH-HHHHHHTTTHHHHHHHHTTC-S-CHHHHHHHHHHHHHHT
T ss_pred ccCCHH-HHHHHHHcCCHHHHHHHHcC-C-ChHHHHHHHHHHHHHh
Confidence 4454 67788899999999988853 2 2335555555555443
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=83.78 E-value=34 Score=34.05 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=103.1
Q ss_pred HHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhh
Q 002889 367 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRD 446 (870)
Q Consensus 367 ~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d 446 (870)
..+.+.+-..|..|.+-|..+++..|... ...-..++..|...|-.|.+..++...+.+|..|... + +.
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-----~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l----~~ 90 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLE-----NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--L----AK 90 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBC-----CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--H----GG
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCC-----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--H----hh
Confidence 34578888999999999998888755421 1111245666666554588888887777777777521 1 11
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhh
Q 002889 447 TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLT 526 (870)
Q Consensus 447 ~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll 526 (870)
.| ..++..++.+|+..... .++.+-...++.|.-|+...++ ..++..++..+
T Consensus 91 ----~~-~~~~~~ilp~ll~~l~d---------------~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l 142 (242)
T 2qk2_A 91 ----RF-SNYASACVPSLLEKFKE---------------KKPNVVTALREAIDAIYASTSL--------EAQQESIVESL 142 (242)
T ss_dssp ----GG-HHHHHHHHHHHHHGGGC---------------CCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHT
T ss_pred ----hH-HHHHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHH
Confidence 12 34667777777763110 1233444556666666655431 45788888889
Q ss_pred hccchhhHHHHHHHHHHHhcCc--hhHHHHHHHhcCChHHHHHHH
Q 002889 527 RRREKYLVVAAVRFVRTILSRH--DEHLINHFVKNNLLKPIVDAF 569 (870)
Q Consensus 527 ~~~~K~L~LaAlRFlR~iI~lk--Defy~ryiIk~nLf~PIl~~f 569 (870)
..+...++..++.++..++... +.++..|+ ..++..++.++
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l 185 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTL 185 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHh
Confidence 8888899999999999988773 33445555 23444455544
No 66
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=83.62 E-value=25 Score=39.85 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=122.4
Q ss_pred HHHhcCcHHHHHHHHcC-----------CCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhH
Q 002889 355 DLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDM 423 (870)
Q Consensus 355 ~Lv~~GL~~vi~~~L~~-----------~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~gl 423 (870)
.+++.|.++.|-..|.. .+..++..|+-+|..+.-.++. .+..+....+ .+..|+++| ...++.+
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-~k~~i~~~~G--aIp~LV~LL-~s~~~~v 259 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-NKATLCSMKG--CMRALVAQL-KSESEDL 259 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHCHH--HHHHHHHGG-GCSCHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-cHHHHHHcCC--cHHHHHHHH-hCCCHHH
Confidence 45688999888888742 2345777888888888877764 2443333222 355666655 4678899
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHh
Q 002889 424 HCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL 503 (870)
Q Consensus 424 k~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~ 503 (870)
+.+.+.+|+.|-...+ ...|..+. -...++.|++-|.... ...+....+-.|.-+..
T Consensus 260 ~~~A~~aL~nLs~~~~--~~~k~~I~---~~GaI~~LV~lLl~s~------------------~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 260 QQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK------------------KESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHHHHTSSCC--HHHHHHHH---HTTHHHHHHHHHTTCC------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHH---HcCCHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHcc
Confidence 9999999999954211 11223222 2345777777664320 11222233333333333
Q ss_pred hccchhhhHHh-hhhHHHHHHHhhhccch----hhHHHHHHHHHHHhc---CchhHHHHHHHhcCChHHHHHHHHHhCCC
Q 002889 504 HHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS---RHDEHLINHFVKNNLLKPIVDAFVANGNR 575 (870)
Q Consensus 504 ~H~yriK~~il-~~nll~rVl~Ll~~~~K----~L~LaAlRFlR~iI~---lkDefy~ryiIk~nLf~PIl~~f~~ng~R 575 (870)
|.-..|.-|. ....+.-++.|+..... -++-.|...+|++-. ..++ +...|++.+.+.|++.++.. + .
T Consensus 317 -~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~G~i~~Lv~LL~~-~-~ 392 (458)
T 3nmz_A 317 -HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKS-H-S 392 (458)
T ss_dssp -HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHSSC-S-C
T ss_pred -CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHcccHHHHHHHHcC-C-C
Confidence 2222344455 66788888888876543 256667777777654 4444 67788899999999988753 2 2
Q ss_pred CcchHHHHHHHHHHH
Q 002889 576 YNLLNSAVLELFEYI 590 (870)
Q Consensus 576 ~NLLnSA~LELfefI 590 (870)
....-.||-=|...-
T Consensus 393 ~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 393 LTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 234555555555443
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=81.19 E-value=61 Score=38.52 Aligned_cols=232 Identities=15% Similarity=0.178 Sum_probs=125.4
Q ss_pred HHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHH
Q 002889 285 VANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDI 364 (870)
Q Consensus 285 ~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~v 364 (870)
+..|..+.-.+....=+.+.+.+.=+..|.+.|.++. ..-|.+++.+|.+++.-..++|. -+.-.|.|+.
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt~~n~~iQk--------lVAFEnaFe~ 212 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALTRSNGAIQK--------IVAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHHTTCHHHHH--------HHHHTTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCHHHHH--------HHHHhccHHH
Confidence 3344444444444444455556666888888888753 57799999999998877666652 2234577777
Q ss_pred HHHHHcCCCc----chhhhhhHHHHHHHhcChHHHHHHHHhcCC-cchHHHHHHHHhccCCh------hHHH--HHHHHH
Q 002889 365 VTDALQSQDK----KLVLTGTDILILFLNQDPNLLRSYVVRQEG-IPLLGLLVKGMITDFGE------DMHC--QFLEIL 431 (870)
Q Consensus 365 i~~~L~~~d~----~ir~~atDILv~iiehdP~lvR~~i~~qe~-~~Ll~~Li~~ll~d~d~------glk~--Ql~eaL 431 (870)
+=.++..+.. .+..-+.-+|..++.++|+- ..+ +++.+ .+-| +..+-.+.+. -++. -+.+++
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~-FrEt~~i~~L---~~LL~~~~~~~~W~~Qk~~N~~~~L~iI 287 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNF-FKEGSYIQRM---KPWFEVGDENSGWSAQKVTNLHLMLQLV 287 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHH-HHHTTCGGGG---GGGGCCCSCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHH-HHHcCCHHHH---HHHhCCCccccccHHHHHHHHHHHHHHH
Confidence 7777665543 23344456688899999873 333 44322 2111 1111111111 1122 267899
Q ss_pred HHhcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhh
Q 002889 432 RSLLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIK 510 (870)
Q Consensus 432 k~LLDp~~m~~~e~d~FL~~FY~~~-~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK 510 (870)
|+|+.|.+.....+ ..=..|++.. +..|+.-++... ....+....+-.++=.++.|+. ..
T Consensus 288 rlLv~~~~~~~~t~-~nQ~~~~~~g~l~~Ll~ll~~~~-----------------~p~~i~~~Al~tla~~irgN~~-~Q 348 (651)
T 3grl_A 288 RVLVSPNNPPGATS-SCQKAMFQCGLLQQLCTILMATG-----------------VPADILTETINTVSEVIRGCQV-NQ 348 (651)
T ss_dssp HHHTCTTSCHHHHH-HHHHHHHHTTHHHHHHHHHTCSS-----------------CCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHhCCCCCCCCCH-HHHHHHHHCCCHHHHHHHHccCC-----------------CCHHHHHHHHHHHHHHHhCCHH-HH
Confidence 99999876421111 1123455543 456666554321 1122333333333334555543 22
Q ss_pred hHHhhh--------h-HHHHHHHhhhccch-hhHHHHHHHHHHHhcCchh
Q 002889 511 CNFLLN--------N-VVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDE 550 (870)
Q Consensus 511 ~~il~~--------n-ll~rVl~Ll~~~~K-~L~LaAlRFlR~iI~lkDe 550 (870)
.+|-.. . ++.-.+.++++++. -++++|.-||++.+.-+++
T Consensus 349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 333222 1 22222334566664 4689999999999877763
No 68
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=79.90 E-value=4.9 Score=45.11 Aligned_cols=248 Identities=19% Similarity=0.297 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHhh--cChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHH---HHh--cCCh
Q 002889 137 IELSTLPLILKTVTE--SGIADQMRLTELILNDQDFFRKLMDLFRICEDLE---NIDGLHMIFKIIKG---IIL--LNSP 206 (870)
Q Consensus 137 ~el~nL~eIl~~i~~--~s~~~rerla~~Il~~~~YI~KLl~LF~~cEdle---~~e~Lh~L~~IvK~---Iil--LNd~ 206 (870)
|.+.+|.-+.+++.. .++.-.-++++-.+ |..++.+|+++|+...--| -..-||++|.=+-+ .|. +| +
T Consensus 96 ~sWpHLqlVYe~llrfi~s~~f~~~~~k~~i-d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~in-n 173 (403)
T 3fga_B 96 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYI-DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQIN-N 173 (403)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCCHHHHTTTS-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-H
T ss_pred cCcHHHHHHHHHHHHHHhccccChhhHHhhc-CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-H
Confidence 345567666665533 12211223333333 5689999999997542222 13345554332211 111 11 1
Q ss_pred hhHhhhhcchhHhHHhhhccc------CCCCCCccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhccccc
Q 002889 207 QIFEKIFGDELMMDIIGSLEY------DPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVL 280 (870)
Q Consensus 207 ~IiE~llsDe~i~~VvG~LEY------DPe~p~~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpRiL 280 (870)
-++..+...+..-||--.||- .=..|-+..|+.||.+ =.+|+-- +-. +
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~-----vLlPLHk---------~~~------------~ 227 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLK-----VLLPLHK---------VKS------------L 227 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHH-----TTTGGGG---------STT------------G
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHH-----HHHHHHc---------CCc------------c
Confidence 233344455555555545542 2223444578888752 2233321 111 1
Q ss_pred chhhHHhHHHHHHHhH--HHHHHHhhCCHHHHHHHHHHh-CC-CCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 002889 281 DEATVANLNSIIHGNN--AYVVSLLKDDSTFIQELFARL-RS-PTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 356 (870)
Q Consensus 281 DD~t~s~LnSlIffNq--veIV~~Lq~d~~FL~eLF~~l-~~-~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~L 356 (870)
+ .|..| .+|++++..|+..-..++.-+ +- |.++. . .-|.||.|+-.+...+++.. |...
T Consensus 228 -----~-----~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns--~-KevlFL~Ele~iLe~~~~~~----f~~i 290 (403)
T 3fga_B 228 -----S-----VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHS--P-KEVMFLNELEEILDVIEPSE----FVKI 290 (403)
T ss_dssp -----G-----GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCH--H-HHHHHHHHHHHHHTTCCHHH----HHHH
T ss_pred -----h-----hhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCc--H-HHHHHHHHHHHHHHhCCHHH----HHHH
Confidence 0 12222 278899999986544444322 11 22221 1 23779999988887776542 2221
Q ss_pred HhcCcHHHHHHHHcCCCcchhhhh-----hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 002889 357 MNEGIFDIVTDALQSQDKKLVLTG-----TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 431 (870)
Q Consensus 357 v~~GL~~vi~~~L~~~d~~ir~~a-----tDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaL 431 (870)
..-||..|..++.++..+|--.| -+-++.++..++..+--.++ ..|.+..-.-=+..++.....+|
T Consensus 291 -~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~--------p~L~~~~~~HWn~~v~~l~~~vl 361 (403)
T 3fga_B 291 -MEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMF--------PSLYRNSKTHWNKTIHGLIYNAL 361 (403)
T ss_dssp -HHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHH--------HHHHHTTSCCSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHccCHHHHHHHHHHH
Confidence 12267788888888876654333 25556666655554433221 12222222223677788888999
Q ss_pred HHhcCCC
Q 002889 432 RSLLDSY 438 (870)
Q Consensus 432 k~LLDp~ 438 (870)
|+|+|-+
T Consensus 362 k~l~e~d 368 (403)
T 3fga_B 362 KLFMEMN 368 (403)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 9998644
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.67 E-value=39 Score=32.47 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHH---------hhhccChHhHHHHHHHHHhc---CcHHHHHHHHcCC
Q 002889 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG---------LSKSLQMVQQLRLFRDLMNE---GIFDIVTDALQSQ 372 (870)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~---------lsK~LQ~~~R~~lf~~Lv~~---GL~~vi~~~L~~~ 372 (870)
.++..+..|...+++++ ...|..++.-|.++.. +.++=.+.-|......|... +.++.+...|.++
T Consensus 16 ~~~~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 93 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDE 93 (211)
T ss_dssp CCGGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS
T ss_pred cCHhHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC
Confidence 34555666666666543 3445555544443321 11111222333333344333 2555666666666
Q ss_pred CcchhhhhhHHH
Q 002889 373 DKKLVLTGTDIL 384 (870)
Q Consensus 373 d~~ir~~atDIL 384 (870)
++.+|..++..|
T Consensus 94 ~~~vr~~a~~aL 105 (211)
T 3ltm_A 94 DGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666665554443
No 70
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.31 E-value=6 Score=45.00 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHh--cCC--------h-hhHhhhhcchhHhHHhhhcc------cCC
Q 002889 167 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIIL--LNS--------P-QIFEKIFGDELMMDIIGSLE------YDP 229 (870)
Q Consensus 167 ~~~YI~KLl~LF~~cEdle~~e~Lh~L~~IvK~Iil--LNd--------~-~IiE~llsDe~i~~VvG~LE------YDP 229 (870)
+..++.+|+++|+. ||.. .=..|..|++.|.. ++- + -++..+...+..-||--+|| -.=
T Consensus 160 d~~Fi~~Ll~lfdS-eDpR---ERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGf 235 (449)
T 2npp_B 160 DQKFVLQLLELFDS-EDPR---ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 235 (449)
T ss_dssp CHHHHHHHHHTTTS-STHH---HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHcCC-CChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc
Confidence 56899999999973 3322 22222222222211 111 1 23344445555555555555 233
Q ss_pred CCCCccchhHhhh
Q 002889 230 DVPHVQHHRNFLK 242 (870)
Q Consensus 230 e~p~~~~HR~fL~ 242 (870)
..|-+..|+.||.
T Consensus 236 a~PLKeehk~fl~ 248 (449)
T 2npp_B 236 ALPLKEEHKIFLL 248 (449)
T ss_dssp CSSCCHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 3344567888884
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=77.69 E-value=81 Score=34.87 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=114.3
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 002889 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 441 (870)
Q Consensus 362 ~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 441 (870)
++.+-..|++++..++..|+..|..+..+++. .|..+.+.. .+..|++.| ...++.++.+...+|+.|.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g---~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~--- 75 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLG---GICKLVDLL-RSPNQNVQQAAAGALRNLVFRS--- 75 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTT---HHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcC---CHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCC---
Confidence 34555677888999999999999998877766 454455433 244556544 5678889988999999886420
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHH
Q 002889 442 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 521 (870)
Q Consensus 442 ~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~r 521 (870)
...|..+.+ ...++.|++-|... ..+++....+-.|.-+..+. ..|..|+. ..+..
T Consensus 76 ~~~k~~i~~---~G~i~~Lv~lL~~~------------------~~~~~~~~a~~aL~nLa~~~--~~~~~i~~-g~i~~ 131 (457)
T 1xm9_A 76 TTNKLETRR---QNGIREAVSLLRRT------------------GNAEIQKQLTGLLWNLSSTD--ELKEELIA-DALPV 131 (457)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHTTC------------------CCHHHHHHHHHHHHHHHTSS--STHHHHHH-HHHHH
T ss_pred HHHHHHHHH---cCCHHHHHHHHhhC------------------CCHHHHHHHHHHHHHHhcCH--HhHHHHHh-ccHHH
Confidence 112222221 23467777766311 02234445566666666653 35677888 99999
Q ss_pred HHHhhhc--------c--------chhhHHHHHHHHHHHhcCchhHHHHHHHhc-CChHHHHHHHHH
Q 002889 522 VLLLTRR--------R--------EKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVA 571 (870)
Q Consensus 522 Vl~Ll~~--------~--------~K~L~LaAlRFlR~iI~lkDefy~ryiIk~-nLf~PIl~~f~~ 571 (870)
++.++.. . +.-+.-.|++.++++-+- ++ +...|++. +++.|++.++..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHh
Confidence 9999832 1 123344788888887754 43 56667776 999999998874
No 72
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=77.20 E-value=83 Score=39.08 Aligned_cols=219 Identities=9% Similarity=0.065 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002889 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (870)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK-~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv 385 (870)
+.-|..|+..+.+++ .+-|+.+...|.+...-.. .+.+... ..+++.+-..|.+++..+|.+|...|.
T Consensus 5 ~~~l~~lL~~l~s~d--~~~R~~A~~~L~~~l~~~~~~~~~~~~---------~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSD--KDFRFMATNDLMTELQKDSIKLDDDSE---------RKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp CHHHHHHHHHTTCSS--HHHHHHHHHHHHHHTSSSCCSCCTTHH---------HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcCCCC--HhHHHHHHHHHHHHHcccccCCChhHH---------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 345778888887654 5677777777766442210 1111111 123444555677899999999999998
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002889 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (870)
Q Consensus 386 ~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~ 465 (870)
.++..-+.-.+. .++..|++.+ .+.+..++.....+|..+..--.-.. ....+...+++..++.|+.-+.
T Consensus 74 ~l~~~~~~~~~~--------~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~-~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 74 PLVSKVKEYQVE--------TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPAS-SGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHTTSCHHHHH--------HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHH--------HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHHHHHHHHHc
Confidence 888766552222 2455666654 45566677666667766653111000 0112344455666666665442
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
+. .....-...++.|+-++...+..+..|+ ..++..++.++...+..++-.|++.+..++
T Consensus 144 ~~------------------~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 144 KQ------------------EDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CC------------------SCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred CC------------------CchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 10 0112223445555555543333333332 668888888888888899999999999987
Q ss_pred cCc-hhHHHHHHHhcCChHHHHHHHHHh
Q 002889 546 SRH-DEHLINHFVKNNLLKPIVDAFVAN 572 (870)
Q Consensus 546 ~lk-Defy~ryiIk~nLf~PIl~~f~~n 572 (870)
..- +++ -..++.+++..+...
T Consensus 204 ~~~~~~~------~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 204 MSCGNIV------FVDLIEHLLSELSKN 225 (1230)
T ss_dssp TTC----------CTTHHHHHHHHHHHT
T ss_pred HhcCHHH------HHHHHHHHHHHhccC
Confidence 653 333 234556666666543
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=74.85 E-value=56 Score=38.26 Aligned_cols=159 Identities=9% Similarity=0.032 Sum_probs=105.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcCCCcccccccCCCCcccCC
Q 002889 408 LGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASCPQEGIAQSASSGGRVEST 486 (870)
Q Consensus 408 l~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY-~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~ 486 (870)
+..|+.+|-...++.++.+...||.-|...... ....+-..+- ...++.|++-|.. .
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~---~~~~~~~~v~~~~glp~Lv~LL~s-------------------~ 367 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWT---YGRYIRSALRQEKALSAIADLLTN-------------------E 367 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH---HHHHHHHHHTSHHHHHHHHHGGGC-------------------S
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHcCcHHHHHHHHcC-------------------C
Confidence 456677776667889999999999988643211 1111111222 2345555553321 1
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccc--------hhhHHHHHHHHHHHhcCchhHHHHHHHh
Q 002889 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRRE--------KYLVVAAVRFVRTILSRHDEHLINHFVK 558 (870)
Q Consensus 487 ~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~--------K~L~LaAlRFlR~iI~lkDefy~ryiIk 558 (870)
...+....|-.|..+..++. .+..| ....+.++++||.+.+ .-.+..|++.+.+++.-++ -..+.|+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~-~~~~~I~~ 443 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL-EAAKKLRE 443 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH-HHHHHHHH
Confidence 33566778888888888764 45544 7789999999987653 2346789999999986655 46889999
Q ss_pred cCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002889 559 NNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (870)
Q Consensus 559 ~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~ 592 (870)
.+.+.+++.++.......+..-.|+.=|......
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999999998864334556777777766666543
No 74
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=73.40 E-value=9.5 Score=36.47 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=67.3
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEe-C--CC---cceeEEEEec--CCCcceeEeecCCCCccccccCeEEEecCCC
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSM-E--RS---EELCLFVIDE--EDNETILLHRISPDDIYRKQEDTIISWRDPE 85 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~-e--~~---~~~~L~V~sE--~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~ 85 (870)
-|+-|..-++ .+.|.--|-|=++..++ . +. ..-...|.++ .|...+|+..|.++-.|.|=-.|.=.|.+++
T Consensus 16 ~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~~ 95 (130)
T 3syx_A 16 VRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDD 95 (130)
T ss_dssp EEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETT
T ss_pred EEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEecccccccccccC
Confidence 4667777765 67899987664444332 1 11 1123444444 6778899999999999999999999999987
Q ss_pred ccccccccccCccchhHHHHHHHHHh
Q 002889 86 YSTELALSFQEPTGCSYIWDNICNVQ 111 (870)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~I~~VQ 111 (870)
.=+-|.||.++.....=+.+.++-
T Consensus 96 --~~yGL~F~S~~dA~~F~~~~~~Al 119 (130)
T 3syx_A 96 --KKFGLTFQSPADARAFDRGIRRAI 119 (130)
T ss_dssp --EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --eEeecccCCHHHHHHHHHHHHHHH
Confidence 448999999998877655554443
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=72.61 E-value=51 Score=33.74 Aligned_cols=184 Identities=10% Similarity=0.124 Sum_probs=107.9
Q ss_pred cHHhHHHHHHHHHH-HHHhhhccCh-HhHHHHHHHHHhcCcHHHHHHHH-cCCCcchhhhhhHHHHHHHhcCh-HHHH-H
Q 002889 323 LEESKKNLVHFLHE-FCGLSKSLQM-VQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILILFLNQDP-NLLR-S 397 (870)
Q Consensus 323 ~~e~rrdlV~FL~E-~c~lsK~LQ~-~~R~~lf~~Lv~~GL~~vi~~~L-~~~d~~ir~~atDILv~iiehdP-~lvR-~ 397 (870)
.-..|++++.=|.. ++.=+..+.. ... | ..++..+..+| ++.+..+|..|+..|..+.+.=. .-+. .
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~---~-----~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQN---Y-----SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCC---C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCccc---H-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 34667777765555 5431222321 000 1 13466677788 78899999999999988774221 1122 3
Q ss_pred HHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCccccccc
Q 002889 398 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA 477 (870)
Q Consensus 398 ~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~ 477 (870)
|.. .++..|++.+ .|...-++..+..+|..++..-+..... .+++.++..|+....
T Consensus 101 y~~-----~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~----------~~l~~ll~~l~~~l~-------- 156 (249)
T 2qk1_A 101 YVS-----LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASS----------GRNEDMLKDILEHMK-------- 156 (249)
T ss_dssp HHH-----HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTT----------CTTHHHHHHHHHHTT--------
T ss_pred HHH-----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccC----------CcHHHHHHHHHHHHc--------
Confidence 332 2555666654 6777888888888877776532111000 002333333333210
Q ss_pred CCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhH--HhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 478 SSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN--FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 478 ~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~~--il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
..++++-...+..|+.|+.+..-..+.| .+...++..+..+|.-.++-++-+|..++-++.
T Consensus 157 -------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 157 -------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp -------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1133444567888888888876421222 123678888999999888999999999888854
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=72.01 E-value=60 Score=37.79 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=41.7
Q ss_pred HHHHHHcCCCcchhhhhhHHHHHHHhcChH--HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC
Q 002889 364 IVTDALQSQDKKLVLTGTDILILFLNQDPN--LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (870)
Q Consensus 364 vi~~~L~~~d~~ir~~atDILv~iiehdP~--lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 439 (870)
.+...|.+.++.+|-.|.+.|..++...|. .+.. ....++..+-.+.|..++....++|-.|.++.|
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~---------~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N 401 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT---------HIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT---------THHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH---------HHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence 333445566777777777777777766652 2211 223334434338888899888888888876643
No 77
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=67.95 E-value=1.7e+02 Score=33.37 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=59.9
Q ss_pred hHhHHHHHHHHHhc-------CcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002889 346 MVQQLRLFRDLMNE-------GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (870)
Q Consensus 346 ~~~R~~lf~~Lv~~-------GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d 418 (870)
+.-|..-.++|.+- .+.+.+..+|.++++.+|..|+--+..+...+|..+.. ..++..|.+ ++.|
T Consensus 100 ~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-------~~~~~~l~~-lL~d 171 (591)
T 2vgl_B 100 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-------QGFLDSLRD-LIAD 171 (591)
T ss_dssp HHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-------HHHHHHHHH-TTSC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-------ccHHHHHHH-HhCC
Confidence 33454445555543 24455777888999999999999999999999987753 124445444 5678
Q ss_pred CChhHHHHHHHHHHHhcCC
Q 002889 419 FGEDMHCQFLEILRSLLDS 437 (870)
Q Consensus 419 ~d~glk~Ql~eaLk~LLDp 437 (870)
.+++++...+.+|..+...
T Consensus 172 ~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 172 SNPMVVANAVAALSEISES 190 (591)
T ss_dssp SCHHHHHHHHHHHHHHTTS
T ss_pred CChhHHHHHHHHHHHHHhh
Confidence 9999998888888887643
No 78
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=67.84 E-value=20 Score=34.29 Aligned_cols=94 Identities=14% Similarity=0.263 Sum_probs=65.4
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCC--cceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccc
Q 002889 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERS--EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELA 91 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~--~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlA 91 (870)
.-|-||..++ .++|.-.|..=.-..| ++. .-.+++|.+-.+.+.+. ..|.++..++-|++-|| |...+ +.-+.
T Consensus 36 ~~v~vY~f~~~~~~W~K~~iEG~LFv~-~R~~~P~~~~ivLNR~~~~n~~-~~l~~~~~~e~~~~~li-~r~~~-~~I~G 111 (134)
T 2lyd_A 36 SHVAFYTFNSSQNEWEKTDVEGAFFIY-HRNAEPFHSIFINNRLNTTSFV-EPITGSLELQSQPPFLL-YRNER-SRIRG 111 (134)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEE-ECSSSSSEEEEEEETTTTEEEE-EECCSSCEEEEETTEEE-EEEGG-GEEEE
T ss_pred CeEEEEEecCCcCceeEcCCcceEEEE-EccCCCceEEEEEcCCCCccee-EEcCCCcEEEeeCCEEE-EECCC-CcEEE
Confidence 3588999975 4689887643111112 232 23567787776655443 46888999999988665 55443 45689
Q ss_pred ccccCccchhHHHHHHHHHhh
Q 002889 92 LSFQEPTGCSYIWDNICNVQR 112 (870)
Q Consensus 92 LSFQe~~GC~~IW~~I~~VQ~ 112 (870)
|-|-+.+-|..|.+.+..+++
T Consensus 112 iWf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 112 FWFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp EEESSHHHHHHHHHHHHHHHH
T ss_pred EEecChHHHHHHHHHHHHHHh
Confidence 999999999999999988765
No 79
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=60.22 E-value=3.2e+02 Score=33.83 Aligned_cols=271 Identities=11% Similarity=0.139 Sum_probs=129.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
.+++.++..+.++.....-|.+++.++..++. .+.+.. |...+ ..+++.+-..+.+.+..+|..+...+..+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~---~~~~~~----~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l 546 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILC---NHSPQV----FHPHV-QALVPPVVACVGDPFYKITSEALLVTQQL 546 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH---SSCGGG----GHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH---hCCHHH----HHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 46666677777766544556677766666553 232211 11111 35677777788888887887777777766
Q ss_pred Hhc-Ch------HHHHHHHHhcCCcchHHHHHHHHh-ccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHH
Q 002889 388 LNQ-DP------NLLRSYVVRQEGIPLLGLLVKGMI-TDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQ 459 (870)
Q Consensus 388 ieh-dP------~lvR~~i~~qe~~~Ll~~Li~~ll-~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~ 459 (870)
+.. .+ ..+..|+ ..++..|+..+- .+.+..++.....+|..|...-+-. + .-+|..+++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~-----~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~------~-~~~~~~~l~~ 614 (1230)
T 1u6g_C 547 VKVIRPLDQPSSFDATPYI-----KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN------L-GSDLPNTLQI 614 (1230)
T ss_dssp HHHHCCSSSCCCCCCHHHH-----HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG------C-CTHHHHHHHH
T ss_pred HHHhcCcccccccchHHHH-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch------h-hhhHHHHHHH
Confidence 643 11 0111121 124455555543 4667788888888888876432110 0 1134444444
Q ss_pred HHHHHHhcCCC-------cccccccCC-CCc-------------ccCCcHHHHHHHHHHHHHHHhhccchhh-hHHhhhh
Q 002889 460 LIDVITASCPQ-------EGIAQSASS-GGR-------------VESTKPEILSNICELLCFCVLHHPYRIK-CNFLLNN 517 (870)
Q Consensus 460 L~~pL~~~~p~-------e~~~~~~~~-~~~-------------~~~~~~~ll~~l~ELL~FcV~~H~yriK-~~il~~n 517 (870)
|...+...... ......... ... .+.....+-...++.|+-++..++-.+- ..+ ..
T Consensus 615 L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v--~~ 692 (1230)
T 1u6g_C 615 FLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI--DA 692 (1230)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHH--HH
T ss_pred HHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHH--HH
Confidence 44333210000 000000000 000 0001222334455555555555543220 000 01
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhh----
Q 002889 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKE---- 593 (870)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~e---- 593 (870)
++..++.++...+....-.++.++..++......+.. +-..++..++.++....-+..-+ .+++.+|..+-..
T Consensus 693 ~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~-~~l~~~~~~l~~~~~~~ 769 (1230)
T 1u6g_C 693 VLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK--ISGSILNELIGLVRSPLLQGGAL-SAMLDFFQALVVTGTNN 769 (1230)
T ss_dssp HHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG--TTTTTHHHHHHHHTCTTCCHHHH-HHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH--hHHhHHHHHHHHHcCcccchHHH-HHHHHHHHHHHhcCCCC
Confidence 1122223334455667778899999988655432211 24456666666554332122222 3455666666543
Q ss_pred -ChHHHHHHHH
Q 002889 594 -NLKSLVKYIV 603 (870)
Q Consensus 594 -Nik~Li~hlV 603 (870)
.+..++.-++
T Consensus 770 ~~~~~ll~~l~ 780 (1230)
T 1u6g_C 770 LGYMDLLRMLT 780 (1230)
T ss_dssp CSHHHHHHHHS
T ss_pred CCHHHHHHHHh
Confidence 3455555554
No 80
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=59.58 E-value=1.2e+02 Score=31.04 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=80.5
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
++.|...+.+++...+.+..+...|+-+|.- .++.|. .+++.|.++.+-..|.+++..++..|+-.|..+.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~----~~~~r~----~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQ----KSEARK----RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHH----HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcC----CcHHHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5666677777665556677788777765531 122232 35688999999999999999999999999988887
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
.++. -|..|.+..+ +..|+++|-...+..++.+...+|..|=
T Consensus 82 ~~~~-nk~~I~~~Ga---I~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 82 EDND-NKLEVAELNG---VPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp TCHH-HHHHHHHTTH---HHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHcCC---HHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 6665 3556665443 3344555544568899999999988883
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=59.16 E-value=1.8e+02 Score=30.65 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=83.2
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHH---HHhccCChhHHHHHHHHHHHhcCC-----CCC
Q 002889 369 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVK---GMITDFGEDMHCQFLEILRSLLDS-----YTL 440 (870)
Q Consensus 369 L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~---~ll~d~d~glk~Ql~eaLk~LLDp-----~~m 440 (870)
|-+.|.+-+..|.|.|...++.+|..+-. .++++.+ .-++|++.-+....+++|..|++- ..|
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~---------~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLS---------NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHH---------THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHH---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34567788889999999888887743321 1222222 122466766666666666666531 112
Q ss_pred CchhhhHH----------------------HHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHH
Q 002889 441 SGAQRDTI----------------------IEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICEL 497 (870)
Q Consensus 441 ~~~e~d~F----------------------L~~FY~~~-~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~EL 497 (870)
...|-..| +..++.-+ ..+++..+.... ....+-.=.-.|+.
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~---------------ksKN~R~R~e~l~~ 190 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL---------------KSKNARQRSECLLV 190 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG---------------GCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---------------ccCCHHHHHHHHHH
Confidence 21111122 22222211 223333333311 11112223456788
Q ss_pred HHHHHhhccchhhhHHhhhhHH---HHHHHhhhccchhhHHHHHHHHHHHh
Q 002889 498 LCFCVLHHPYRIKCNFLLNNVV---DKVLLLTRRREKYLVVAAVRFVRTIL 545 (870)
Q Consensus 498 L~FcV~~H~yriK~~il~~nll---~rVl~Ll~~~~K~L~LaAlRFlR~iI 545 (870)
+..++..|..-- ...+ .-|+.++..++.-++=+|+.++-.|.
T Consensus 191 l~~li~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 191 IEYYITNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888888887651 2355 77889999999999999999988754
No 82
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.89 E-value=1.4e+02 Score=28.25 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=14.8
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHH
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILI 385 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv 385 (870)
.++.+..+|.++++.+|..++..|.
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5556666666666666665554443
No 83
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=55.80 E-value=43 Score=31.74 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=59.6
Q ss_pred CeeEEEEeCC-CCCceeccc---eEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccc
Q 002889 15 QRVKVYRLND-DGKWDDQGT---GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 90 (870)
Q Consensus 15 ~RVKVY~L~~-~~~W~D~GT---G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~Dl 90 (870)
--|=||..+. .++|...|. =|+.. -.....+++|.+-.+.+.+ ...|.++..++-|++-|| |+.+. +.=+
T Consensus 31 ~~v~vY~f~~~~~~W~K~~iEGtLFv~~---R~~P~~~~iVlNR~~~~n~-~~~i~~~~~~e~~~~~l~-~r~~~-~~i~ 104 (127)
T 2qkl_A 31 SHVAVYQFDVGSQKWLKTSIEGTFFLVK---DQRARVGYVILNRNSPENL-YLFINHPSNVHLVDRYLI-HRTEN-QHVV 104 (127)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEE---ETTCCEEEEEEESSSSCCE-EEEECSGGGEEEETTEEE-EEETT-TEEE
T ss_pred CeEEEEEecCCCCceEEcCcEEEEEEEE---ccCCceEEEEEcCCCCcCe-eEecCCCceEEEeCCEEE-EEcCC-CcEE
Confidence 3588999975 579988763 33321 1123356778777666544 346888899998877555 66654 6778
Q ss_pred cccccCccchhHHHHHHHHH
Q 002889 91 ALSFQEPTGCSYIWDNICNV 110 (870)
Q Consensus 91 ALSFQe~~GC~~IW~~I~~V 110 (870)
+|=|-+.+-|..|.+.+..+
T Consensus 105 GiWf~~~~d~~~i~~~l~~l 124 (127)
T 2qkl_A 105 GLWMFDPNDMSRIFNIVKES 124 (127)
T ss_dssp EEEESSTHHHHHHHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHH
Confidence 89999999999998887654
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=51.77 E-value=3.9e+02 Score=32.26 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=59.4
Q ss_pred HHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-------ccChHhHHHHHHHHHhcCcHHHHHHHHcC
Q 002889 299 VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-------SLQMVQQLRLFRDLMNEGIFDIVTDALQS 371 (870)
Q Consensus 299 IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK-------~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~ 371 (870)
-++.++..+.|+.-|..++.+.+.+.+-|.=+...||.++.-.= .+.+..|..+ +..|+..+. +
T Consensus 26 ~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~i-----k~~ll~~l~----~ 96 (960)
T 1wa5_C 26 NLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI-----KKEIVPLMI----S 96 (960)
T ss_dssp HHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH-----HHHHHHHHH----H
T ss_pred HHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH-----HHHHHHHHH----h
Confidence 34456778899999999988777777778888888888875421 3555555432 222333322 2
Q ss_pred CCcchhhhhhHHHHHHHhcC-----hHHHHH
Q 002889 372 QDKKLVLTGTDILILFLNQD-----PNLLRS 397 (870)
Q Consensus 372 ~d~~ir~~atDILv~iiehd-----P~lvR~ 397 (870)
+...+|...++++..|+.+| |.++-.
T Consensus 97 ~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~ 127 (960)
T 1wa5_C 97 LPNNLQVQIGEAISSIADSDFPDRWPTLLSD 127 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCccchhHHHHH
Confidence 34778888888888887764 666554
No 85
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=51.22 E-value=3.2e+02 Score=31.10 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++-..|++++ .++|++++.=|--+..++... ..|++.+++ .+++++..+|..|-=-+..+.+
T Consensus 15 ~~~i~~~L~~~~--~~~k~~~~~kli~~~~~G~d~-------------~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~ 78 (591)
T 2vgl_B 15 IFELKAELNNEK--KEKRKEAVKKVIAAMTVGKDV-------------SSLFPDVVN-CMQTDNLELKKLVYLYLMNYAK 78 (591)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHHHHTTCCC-------------GGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHCCCCh-------------HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcc
Confidence 455666666543 456666664443333333321 234555565 5677777777666555555555
Q ss_pred cChHH
Q 002889 390 QDPNL 394 (870)
Q Consensus 390 hdP~l 394 (870)
.+|.+
T Consensus 79 ~~~e~ 83 (591)
T 2vgl_B 79 SQPDM 83 (591)
T ss_dssp HSHHH
T ss_pred cCchH
Confidence 55554
No 86
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=50.52 E-value=43 Score=34.29 Aligned_cols=76 Identities=7% Similarity=0.237 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002889 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (870)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ 386 (870)
+..|.+||..+++++ ..-|..++.||-.++.-++.- +.+ |...+...|++++..+|.+.++.+|..|++.+..
T Consensus 145 ~~ll~~l~~~l~~k~--~~vk~~al~~l~~~~~~~~~~--~~~---l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 145 EDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDG--YST---LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCCSC--SHH---HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHcCCc--chh---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 368889999998764 477889999999999876642 111 2222335688999999999999999999999987
Q ss_pred HHh
Q 002889 387 FLN 389 (870)
Q Consensus 387 iie 389 (870)
+..
T Consensus 218 i~~ 220 (249)
T 2qk1_A 218 LIK 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 87
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=49.34 E-value=2.2e+02 Score=35.84 Aligned_cols=178 Identities=13% Similarity=0.183 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh---ccChHhHHHHHHHHHhc--CcHHHHHHHHcCC-------
Q 002889 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK---SLQMVQQLRLFRDLMNE--GIFDIVTDALQSQ------- 372 (870)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK---~LQ~~~R~~lf~~Lv~~--GL~~vi~~~L~~~------- 372 (870)
+=++|+.+|+..+.+ +...+.-++.+|..+|.-.. .+....|..+...|... .||.++..+|...
T Consensus 131 ~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~ 207 (1204)
T 3a6p_A 131 HWPDMLIELDTLSKQ---GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQV 207 (1204)
T ss_dssp TCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346788888877654 23345556677777764321 12222222333333322 2334444444321
Q ss_pred ------------CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC
Q 002889 373 ------------DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 440 (870)
Q Consensus 373 ------------d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 440 (870)
+..++..+.+.+...+.--|. +++.. ....++..++. ++. ++.++...+++|..++.- .|
T Consensus 208 ~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~---~~i~~-~~~~ll~~l~~-~l~--~~~lr~~A~ecL~~i~s~-~~ 279 (1204)
T 3a6p_A 208 KTDTSQESKAQANCRVGVAALNTLAGYIDWVSM---SHITA-ENCKLLEILCL-LLN--EQELQLGAAECLLIAVSR-KG 279 (1204)
T ss_dssp TTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH---HHHHT-TTSHHHHHHHH-GGG--CTTTHHHHHHHHHHHHTC-CS
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHhccCH---HHHHh-ccchHHHHHHH-HcC--CHHHHHHHHHHHHHHHhC-CC
Confidence 122333344444433333221 11221 12346677664 333 567888889999999863 33
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhh
Q 002889 441 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLH 504 (870)
Q Consensus 441 ~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~ 504 (870)
...++..++.+|+...+..++.-+....+.. +.....+....+|+|++-+..+
T Consensus 280 ~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~-----------~~e~d~e~~k~l~~ll~~lg~~ 332 (1204)
T 3a6p_A 280 KLEDRKPLMVLFGDVAMHYILSAAQTADGGG-----------LVEKHYVFLKRLCQVLCALGNQ 332 (1204)
T ss_dssp CHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS-----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC-----------CccHHHHHHHHHHHHHHHHHHH
Confidence 3335556666666655656655433211100 0111234556777777766654
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=48.38 E-value=4.2e+02 Score=31.63 Aligned_cols=322 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHhhhee------eeeeehhcccccc---hhhHHhHHHHHHHhHHHHHHH--hhCCHHHHHHHHHHhCC---CCC
Q 002889 257 LVLSKIHQTYRV------GYLKDVVLARVLD---EATVANLNSIIHGNNAYVVSL--LKDDSTFIQELFARLRS---PTT 322 (870)
Q Consensus 257 ~i~~KIHqtYRL------qYLKDVVLpRiLD---D~t~s~LnSlIffNqveIV~~--Lq~d~~FL~eLF~~l~~---~~~ 322 (870)
.++.+|+..|.- ++||+-+|.-+.. ++ ..+-.-+.--=+.|+.+ ..+=++|+.+|+..+.+ ...
T Consensus 81 ~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~--~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~ 158 (963)
T 2x19_B 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS--KIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVD 158 (963)
T ss_dssp HHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------
T ss_pred HHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCC
Q ss_pred cHHhHHHHHHHHHHHH--HhhhccChHhHHHHHHHHHhcC--cHHHHHHHHcCCCcc--hhhhhhHHHHHHHhcChHHHH
Q 002889 323 LEESKKNLVHFLHEFC--GLSKSLQMVQQLRLFRDLMNEG--IFDIVTDALQSQDKK--LVLTGTDILILFLNQDPNLLR 396 (870)
Q Consensus 323 ~~e~rrdlV~FL~E~c--~lsK~LQ~~~R~~lf~~Lv~~G--L~~vi~~~L~~~d~~--ir~~atDILv~iiehdP~lvR 396 (870)
+...+.-++.+|+.+| .....+....|..+...|...- +++++..+|...... ++..+...+...+.......
T Consensus 159 ~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~- 237 (963)
T 2x19_B 159 GQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ- 237 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG-
T ss_pred cHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc-
Q ss_pred HHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccc
Q 002889 397 SYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQS 476 (870)
Q Consensus 397 ~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~ 476 (870)
....++..+++.+ .++.+....+++|..++. ....+.....+..++...+.. ...+...
T Consensus 238 ------~~~~ll~~l~~~l---~~~~~~~~a~~~l~~i~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~--------- 296 (963)
T 2x19_B 238 ------DCEALIQAAFAAL---QDSELFDSSVEAIVNAIS--QPDAQRYVNTLLKLIPLVLGL-QEQLRQA--------- 296 (963)
T ss_dssp ------GTHHHHHHHHHHT---TSTTTHHHHHHHHHHHHT--CTTGGGCHHHHHHHHHHHHTT-HHHHHHH---------
T ss_pred ------cchHHHHHHHHHh---CCchHHHHHHHHHHHHHc--ccccccCHHHHHHHHHHHHhh-HHHHHHH---------
Q ss_pred cCCCCcccCCcHHHHHHHHHHHHHHHhhccchhh----hHHhhhhHHHHHHHhhhc-----cchhhHHHHHHHHHHHhc-
Q 002889 477 ASSGGRVESTKPEILSNICELLCFCVLHHPYRIK----CNFLLNNVVDKVLLLTRR-----REKYLVVAAVRFVRTILS- 546 (870)
Q Consensus 477 ~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK----~~il~~nll~rVl~Ll~~-----~~K~L~LaAlRFlR~iI~- 546 (870)
....+.+.+..+|++++-+...|.-.+. .--.-..++.-++.++.. .+--+...|+-|.-+++.
T Consensus 297 ------~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~ 370 (963)
T 2x19_B 297 ------VQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDD 370 (963)
T ss_dssp ------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHH
T ss_pred ------HHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHH
Q ss_pred Cch------hHHHHHHHhcCChHHHHHHHHHhCCCCcchH----------------HHHHHHHHHHHhhChHHHHHHHHH
Q 002889 547 RHD------EHLINHFVKNNLLKPIVDAFVANGNRYNLLN----------------SAVLELFEYIRKENLKSLVKYIVD 604 (870)
Q Consensus 547 lkD------efy~ryiIk~nLf~PIl~~f~~ng~R~NLLn----------------SA~LELfefIr~eNik~Li~hlVe 604 (870)
..+ .-....+. ..+..++.+++.+..+..--. .++.+++..+..-.-+.++.++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~--~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~ 448 (963)
T 2x19_B 371 ILSFEAEKQAVYQQVYR--PVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYD 448 (963)
T ss_dssp HTTSCHHHHHHHHHHHH--HHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Q ss_pred HhHhhc
Q 002889 605 SFWNQL 610 (870)
Q Consensus 605 ~y~~~l 610 (870)
.....+
T Consensus 449 ~l~~~l 454 (963)
T 2x19_B 449 KLGRLL 454 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 89
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=47.46 E-value=3.2e+02 Score=29.94 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002889 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (870)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii 388 (870)
+++-+...+.++ +..-|+.++..|-+++.. +... .....+++.+...+.+++..+|..|...|..+.
T Consensus 165 l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~---~~~~--------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 165 LRQYFRNLCSDD--TPMVRRAAASKLGEFAKV---LELD--------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHTCS--CHHHHHHHHHHHHHHHHT---SCHH--------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH---hcHH--------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 334344444544 346677777777666543 3221 123567888888899999999999999999888
Q ss_pred hcChH-HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002889 389 NQDPN-LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 389 ehdP~-lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (870)
+.-+. .... .++..+ ..++.+.+..++....++|-.+.
T Consensus 232 ~~~~~~~~~~--------~~~~~l-~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 232 QLLPQEDLEA--------LVMPTL-RQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HHSCHHHHHH--------HTHHHH-HHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HhCCHHHHHH--------HHHHHH-HHHccCCCHHHHHHHHHHHHHHH
Confidence 76543 2221 133333 33457788888888888777765
No 90
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=46.31 E-value=2e+02 Score=32.18 Aligned_cols=84 Identities=17% Similarity=0.335 Sum_probs=48.9
Q ss_pred HHHHHhhCCHHHHHHHHHHh-C---CCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 002889 298 YVVSLLKDDSTFIQELFARL-R---SPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQD 373 (870)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~l-~---~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d 373 (870)
+|++++..|+..-..++.-+ + -.+... -|.||.|+-.+...+++.+=...- .-||..|..++.++.
T Consensus 282 cv~qf~eKDp~L~~~vi~~LLk~WP~tns~K-----evlFL~eleeiLe~~~~~~f~~i~-----~~lF~~la~ci~S~h 351 (392)
T 2jak_A 282 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPK-----EVMFLNELEEILDVIEPSEFVKIM-----EPLFRQLAKCVSSPH 351 (392)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHSSCSSCCTT-----HHHHHHHHHHHHHTCCHHHHHHHH-----HHHHHHHHHHHTCSS
T ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHHHHHcCCc
Confidence 68889988876444444322 1 112222 288999999888877765322221 235677778888777
Q ss_pred cchhhhhh-----HHHHHHHhcC
Q 002889 374 KKLVLTGT-----DILILFLNQD 391 (870)
Q Consensus 374 ~~ir~~at-----DILv~iiehd 391 (870)
.+|--.|. |-++.++..+
T Consensus 352 fqVAErAL~~wnNe~i~~li~~n 374 (392)
T 2jak_A 352 FQVAERALYYWNNEYIMSLISDN 374 (392)
T ss_dssp HHHHHHHHGGGGCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcHHHHHHHHhh
Confidence 66543332 4444454444
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=42.89 E-value=1e+02 Score=37.85 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhc-cC--hHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002889 318 RSPTTLEESKKNLVHFLHEFCGLSKS-LQ--MVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (870)
Q Consensus 318 ~~~~~~~e~rrdlV~FL~E~c~lsK~-LQ--~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iieh 390 (870)
.+....++-|.+...||+.++...-. +- ++ ..| ..+++.+-+++++++..+..+|+.++..++..
T Consensus 812 ~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~---~~~-----~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 812 KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPP---AAF-----KLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCH---HHH-----HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred cchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCH---HHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 34555778999999999998764321 11 11 112 24556667899999999999999998887763
No 92
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.74 E-value=2.3e+02 Score=26.93 Aligned_cols=44 Identities=14% Similarity=-0.015 Sum_probs=28.6
Q ss_pred ccChHhHHHHHHHHHhc---CcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002889 343 SLQMVQQLRLFRDLMNE---GIFDIVTDALQSQDKKLVLTGTDILIL 386 (870)
Q Consensus 343 ~LQ~~~R~~lf~~Lv~~---GL~~vi~~~L~~~d~~ir~~atDILv~ 386 (870)
+=.+..|......|... +.++.+...|.+++..+|..++..|..
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQ 76 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33455566656666554 467888888888888888766655443
No 93
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=41.18 E-value=2.8e+02 Score=27.57 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=10.3
Q ss_pred cHHHHHHHHcCCCcchhhhh
Q 002889 361 IFDIVTDALQSQDKKLVLTG 380 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~a 380 (870)
+++.+..+|.++++.+|..+
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a 148 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRAT 148 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHH
Confidence 34444455556665555443
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=40.51 E-value=1.3e+02 Score=32.99 Aligned_cols=64 Identities=8% Similarity=0.063 Sum_probs=47.3
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002889 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (870)
Q Consensus 361 L~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (870)
+.+-++-+|.+.++.||.+|+=-..-++..+|.+++.+ ++.+ ..++++.+++++.....+|..+
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~---------~~~l-~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW---------VNEA-QEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT---------HHHH-HHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH---------HHHH-HHHhcCCCccHHHHHHHHHHHH
Confidence 45567888999999999988766778999999998763 4433 4466889998876555554444
No 95
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=38.48 E-value=2.7e+02 Score=28.40 Aligned_cols=89 Identities=10% Similarity=0.067 Sum_probs=66.6
Q ss_pred chhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHH
Q 002889 507 YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 586 (870)
Q Consensus 507 yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LEL 586 (870)
...|..|.....+..++.||++.+.-++-.|+.-+|.+-.-+++ .-..|++.+-+.|++.++...++ ..+...|+-=|
T Consensus 42 ~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~-nk~~I~~~GaI~~Lv~lL~~~~~-~~~~e~a~~aL 119 (233)
T 3tt9_A 42 SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND-NKLEVAELNGVPRLLQVLKQTRD-LETKKQITGLL 119 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCHHHHHHHHccCCC-HHHHHHHHHHH
Confidence 44577788889999999999999999999999999998765444 66788899999999999976443 34555555445
Q ss_pred HHHHHhhChHH
Q 002889 587 FEYIRKENLKS 597 (870)
Q Consensus 587 fefIr~eNik~ 597 (870)
+..-..+..|.
T Consensus 120 ~nLS~~~~~k~ 130 (233)
T 3tt9_A 120 WNLSSNDKLKN 130 (233)
T ss_dssp HHHHTSGGGHH
T ss_pred HHHHcChhhHH
Confidence 55443344443
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=37.60 E-value=1.8e+02 Score=29.48 Aligned_cols=192 Identities=10% Similarity=0.008 Sum_probs=104.6
Q ss_pred HHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChH-
Q 002889 315 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPN- 393 (870)
Q Consensus 315 ~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~- 393 (870)
.++.+.+- ..|.+++.-|.+.+.-....... ...+..+ ..+...+.-++.+.+..+...|.++|..++..-..
T Consensus 16 e~l~sk~W--K~R~eale~l~~~~~~~~~~~~~--~~~~~~~--~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 16 ERLTYKLW--KARLEAYKELNQLFRNSVGDISR--DDNIQIY--WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHTTCSSH--HHHHHHHHHHHHHHHTC------------CCT--TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred HhcccCcH--HHHHHHHHHHHHHHhhCcccccc--hhHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 44444332 45778887666665433322211 1111101 23566778888999999999999999888874321
Q ss_pred H-HHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcc
Q 002889 394 L-LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG 472 (870)
Q Consensus 394 l-vR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~ 472 (870)
. .+..... .-..++..|++-.+.+...+++....+++-.+...... ...++..+....
T Consensus 90 ~~~~~~~~~-~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----------------~~~~~e~l~~~l---- 148 (278)
T 4ffb_C 90 SLKNAHNIT-LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----------------ITQSVELVIPFF---- 148 (278)
T ss_dssp -CCHHHHHH-HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS----------------SHHHHHHHGGGG----
T ss_pred hcccchhHH-HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc----------------HHHHHHHHHHHH----
Confidence 1 1211110 01224455565555677777777666666555422211 122233333210
Q ss_pred cccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhh-HHhhhhHHHHHHHhhhccchhhHHHHHHHHHHH
Q 002889 473 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC-NFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (870)
Q Consensus 473 ~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~H~yriK~-~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~i 544 (870)
....+.+-.-.+..|+-|++++....-. --.-..++.-+..++..+++-++=+|+.++-.+
T Consensus 149 -----------~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 149 -----------EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp -----------GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -----------hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 1123455566778888888887654321 111233445566788889999999999988764
No 97
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=33.16 E-value=5.2e+02 Score=28.31 Aligned_cols=196 Identities=14% Similarity=0.157 Sum_probs=123.5
Q ss_pred ChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChH---HHHHHHHhcCCcchHHHHHHHHhccCCh
Q 002889 345 QMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPN---LLRSYVVRQEGIPLLGLLVKGMITDFGE 421 (870)
Q Consensus 345 Q~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~---lvR~~i~~qe~~~Ll~~Li~~ll~d~d~ 421 (870)
++.+-.+|...+.+.+++..+-..|..=+-..|-.++.|+..++-+.+. ..-.|+.++ .-++.+|+.+-= ++
T Consensus 63 ~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gYe---~~ 137 (341)
T 1upk_A 63 QTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYE---SP 137 (341)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGG---ST
T ss_pred CHHHHHHHHHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC--HHHHHHHHHhhc---cc
Confidence 3445568888999999999999999998988999999999998887753 233566652 335555555442 22
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhhHHHH-HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH
Q 002889 422 DMHCQFLEILRSLLDSYTLSGAQRDTIIE-IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 500 (870)
Q Consensus 422 glk~Ql~eaLk~LLDp~~m~~~e~d~FL~-~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 500 (870)
.+..-.-.+||..+--+. +.. .+|..++-.+|+-+-. | . .+ ..+..+.-+=|||+
T Consensus 138 diAl~~G~mLRecir~e~--------la~~iL~~~~f~~fF~yv~~--~----------~--Fd-iasDAf~TfkelLt- 193 (341)
T 1upk_A 138 EIALNCGIMLRECIRHEP--------LAKIILWSEQFYDFFRYVEM--S----------T--FD-IASDAFATFKDLLT- 193 (341)
T ss_dssp TTHHHHHHHHHHHHTSHH--------HHHHHHHSGGGGHHHHHTTC--S----------S--HH-HHHHHHHHHHHHHH-
T ss_pred hhHhHHHHHHHHHHHhHH--------HHHHHhccHHHHHHHHHhcC--C----------C--ch-HHHHHHHHHHHHHh-
Confidence 222223344444332111 111 2344444444442211 0 0 11 23445667777776
Q ss_pred HHhhccchhhhHHhhhh--HHHHHHHhhhccchhhHHHHHHHHHHHhcC--chhHHHHHHHhcCChHHHHHHHHHh
Q 002889 501 CVLHHPYRIKCNFLLNN--VVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVAN 572 (870)
Q Consensus 501 cV~~H~yriK~~il~~n--ll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l--kDefy~ryiIk~nLf~PIl~~f~~n 572 (870)
.|.--.-.|+-.|- +..+.-.|+.+..=.-+--+||++..++.- +=.+..|||-..+-++-+|.+|.+.
T Consensus 194 ---~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~ 266 (341)
T 1upk_A 194 ---RHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK 266 (341)
T ss_dssp ---SSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS
T ss_pred ---ccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc
Confidence 34433334433322 456677899998888889999999998866 7788999999999999988877544
No 98
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=31.51 E-value=5.4e+02 Score=28.02 Aligned_cols=189 Identities=11% Similarity=0.044 Sum_probs=105.8
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcC
Q 002889 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQE 403 (870)
Q Consensus 324 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehdP~lvR~~i~~qe 403 (870)
..-|..++.-|.++ +..+.+. -+..-+++++.....+++..+|.+++.++..+..+-+...+..
T Consensus 101 ~~vR~~a~~~L~~l---~~~~~~~--------~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~----- 164 (588)
T 1b3u_A 101 TVVRDKAVESLRAI---SHEHSPS--------DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE----- 164 (588)
T ss_dssp HHHHHHHHHHHHHH---HTTSCHH--------HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHH---HHHCCHH--------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH-----
Confidence 45566666555554 4444332 1223467788777788888999999999999988876544443
Q ss_pred CcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcc
Q 002889 404 GIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRV 483 (870)
Q Consensus 404 ~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~ 483 (870)
++..+.. ++.|.++.++.+..++|-.+...-. . + .+....++.|..-+.+ ....+
T Consensus 165 ---l~~~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~---~--~----~~~~~l~~~l~~~~~d------------~~~~v 219 (588)
T 1b3u_A 165 ---LRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLE---L--D----NVKSEIIPMFSNLASD------------EQDSV 219 (588)
T ss_dssp ---HHHHHHH-HHTCSCHHHHHHHHHHHHHHHHTSC---H--H----HHHHTHHHHHHHHHTC------------SCHHH
T ss_pred ---HHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhc---H--H----hHHHHHHHHHHHHhcC------------CcHHH
Confidence 3334443 4578899999999888887764311 1 1 1222333333322211 00112
Q ss_pred cCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC-chhHHHHHHHhcCCh
Q 002889 484 ESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR-HDEHLINHFVKNNLL 562 (870)
Q Consensus 484 ~~~~~~ll~~l~ELL~FcV~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~l-kDefy~ryiIk~nLf 562 (870)
+......+..+++.+ +- ......++..+..++...+..++-+|++.+-.+... ..+. +...++
T Consensus 220 r~~a~~~l~~l~~~~-------~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l~ 283 (588)
T 1b3u_A 220 RLLAVEACVNIAQLL-------PQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-----TKTDLV 283 (588)
T ss_dssp HTTHHHHHHHHHHHS-------CH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-----HHHTHH
T ss_pred HHHHHHHHHHHHHhC-------CH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-----chhHHH
Confidence 222223333333321 10 112344566666777777777888999888887643 2332 234455
Q ss_pred HHHHHHH
Q 002889 563 KPIVDAF 569 (870)
Q Consensus 563 ~PIl~~f 569 (870)
..++.++
T Consensus 284 ~~l~~~l 290 (588)
T 1b3u_A 284 PAFQNLM 290 (588)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555555
No 99
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=29.82 E-value=2.5e+02 Score=27.17 Aligned_cols=110 Identities=5% Similarity=0.027 Sum_probs=71.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++..+..++....+. ...+-++|.+.++-+...|.. ..+|..-|++.++.+...|..+|=+|+.
T Consensus 16 ~~~~IekATs~~~~~~D----w~~~leicD~I~~~~~~~keA----------~ral~krl~~~n~~vql~AL~LLd~~vk 81 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTED----WSLIMDICDKVGSTPNGAKDC----------LKAIMKRVNHKVPHVALQALTLLGACVA 81 (163)
T ss_dssp THHHHHHHTCTTCSSCC----HHHHHHHHHHHHHSSSHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566666665432222 233457888877655455554 2456666788899999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 436 (870)
+--..++.-+.+ .-+++.|++++-...++.++..+.+.|..+=+
T Consensus 82 NcG~~Fh~evas---~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 82 NCGKIFHLEVCS---RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HTCHHHHHHHTS---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhh---HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 865556544433 34778887766444677788777777666643
No 100
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=29.10 E-value=3.6e+02 Score=28.08 Aligned_cols=62 Identities=13% Similarity=0.356 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 384 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL 384 (870)
.||++++....+ .+.+-||-++.||.|.|. +..+.. --.++.+...|.++|+.+.-.++...
T Consensus 53 ~~l~~il~~~~~--~~~~vrk~~~~Fi~e~~~--~k~~l~-----------~~~l~~L~~Ll~d~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 53 EFLESVLSLAHD--SNMEVRKQVVAFVEQVCK--VKVELL-----------PHVINVVSMLLRDNSAQVIKRVIQAC 114 (257)
T ss_dssp HHHHHHHGGGGC--SCHHHHHHHHHHHHHHHH--HCGGGH-----------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--ChHHHHHHHHHHHHHHHH--HHHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455555553333 557889999999999992 211111 11345666666666655544343333
No 101
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=29.00 E-value=82 Score=29.90 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=60.1
Q ss_pred HHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCc--------HHHHHHHHcCCCcchhhhhhHHHHH
Q 002889 315 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGI--------FDIVTDALQSQDKKLVLTGTDILIL 386 (870)
Q Consensus 315 ~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL--------~~vi~~~L~~~d~~ir~~atDILv~ 386 (870)
.-|++.....---+++.-.|++||.+-|.--...=..++ .++.+.+ =+.+.++|.+.-++++.++.-+|..
T Consensus 24 vYL~~~~I~~~~E~~il~~i~ncCe~Ik~~Y~~~fn~l~-d~m~~di~~YnI~nvkn~l~~~l~D~rPSVkLAtisLLSi 102 (145)
T 2jby_A 24 DYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLY-DIMERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLAS 102 (145)
T ss_dssp HHHTTCCCCSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhhhhhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 334443332223457788899999987765444434444 3344433 3577899999999999988888877
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002889 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (870)
Q Consensus 387 iiehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d 418 (870)
+|.-=- . ++..+...++-+|+.+..+
T Consensus 103 IIkKl~----k--I~h~d~~~~~evIn~isa~ 128 (145)
T 2jby_A 103 VIKKLN----K--IQHTDAAMFSEVIDGIVAE 128 (145)
T ss_dssp HHHHHH----T--TSCCCGGGGHHHHHHHSSS
T ss_pred HHHHHH----H--hhccHHHHHHHHHHHHhhh
Confidence 764211 1 1234566777778777543
No 102
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.47 E-value=2.5e+02 Score=28.18 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=73.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++.....++....+. ...+-|+|.+.+.-+...|.+ ..+|..-|++.++.+...|..+|-+++.
T Consensus 6 ~~~~ie~AT~~~~~~~d----w~~~leicd~i~~~~~~~k~a----------~r~l~krl~~~n~~~~l~aL~Lle~~vk 71 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPD----WPSILLICDEINQKDVTPKNA----------FAAIKKKMNSPNPHSSCYSLLVLESIVK 71 (220)
T ss_dssp HHHHHHHHHCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHhhcCCCcCHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 44555556555443222 224566887776544444443 2455666788999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 436 (870)
+--..++..+.+ ..+++.|++++-...+..++..+.+.+..+-+
T Consensus 72 NcG~~f~~eva~---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 72 NCGAPVHEEVFT---KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HSHHHHHHHHSS---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 876666654443 34888888866556778888888888777754
No 103
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=28.41 E-value=3.7e+02 Score=26.24 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=74.3
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++..+..++....+.+ ..+-++|.+.++-....|.. ..+|..-|++.++.+...|..+|=+|+.
T Consensus 14 ~~~~IekATs~~l~~~Dw----~~ileicD~I~~~~~~~k~A----------~ral~krl~~~n~~vql~AL~LLd~~vk 79 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDW----EYIIGFCDQINKELEGPQIA----------VRLLAHKIQSPQEWEALQALTVLEACMK 79 (171)
T ss_dssp HHHHHHHHTCTTCSSCCH----HHHHHHHHHHHHSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCH----HHHHHHHHHHHcCCccHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556666666655433322 34458888877665555554 3567777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhHHHHHHHHHHHhcC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLLD 436 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LLD 436 (870)
+--..++.-+.+ ..+++.|++++-. ..+..++..+.+.|..+=+
T Consensus 80 NCG~~Fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 80 NCGRRFHNEVGK---FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HSHHHHHHHHTS---HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHhh---HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 876666654443 4588888886632 2456778777777776643
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=26.97 E-value=4.4e+02 Score=27.99 Aligned_cols=77 Identities=16% Similarity=0.429 Sum_probs=56.8
Q ss_pred HHHHHHHHH--HHhhccchhhhHHhhhhHHHHHHHhhh--cc---chhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHH
Q 002889 492 SNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR--RR---EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 564 (870)
Q Consensus 492 ~~l~ELL~F--cV~~H~yriK~~il~~nll~rVl~Ll~--~~---~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~P 564 (870)
..+|-.|.- ||-.|+- .|..|++-+++-.+--.++ ++ .-+|+|++|-.+-++|...|.-...|+....++..
T Consensus 71 nRVcnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 345554443 6777875 5677888888766554433 22 35999999999999999999999999999997665
Q ss_pred HHHHH
Q 002889 565 IVDAF 569 (870)
Q Consensus 565 Il~~f 569 (870)
.+..+
T Consensus 150 CLrim 154 (268)
T 2fv2_A 150 CLRIM 154 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 105
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.59 E-value=2.5e+02 Score=28.52 Aligned_cols=111 Identities=9% Similarity=0.155 Sum_probs=74.3
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002889 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (870)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~ii 388 (870)
-|.++..+..++....+. ...+-|+|.+.+.=....|.+ ..+|..-|++.++.+...|..+|-+++
T Consensus 8 ~~~~~i~kAT~~~~~~~d----w~~ileicD~I~~~~~~~k~a----------~ral~krl~~~n~~v~l~aL~LLe~~v 73 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETD----WESILQICDLIRQGDTQAKYA----------VNSIKKKVNDKNPHVALYALEVMESVV 73 (226)
T ss_dssp HHHHHHHHHTCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 366777777776653332 234456777766533334543 356777788999999999999998888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 002889 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (870)
Q Consensus 389 ehdP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 436 (870)
.+--..++.-|.+ ..+++.|++++=...+..++..+.+.|..+=+
T Consensus 74 kNcG~~f~~eias---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 74 KNCGQTVHDEVAN---KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHCHHHHHHHSS---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHhhcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8766655554443 34777777766445677888888888877743
No 106
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=25.23 E-value=5.6e+02 Score=27.98 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhc-----CcH------HHHHHHH
Q 002889 301 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNE-----GIF------DIVTDAL 369 (870)
Q Consensus 301 ~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~-----GL~------~vi~~~L 369 (870)
+++|+|.+|-.|... ++++.-|=..+.-+..=-..-=+.-|..|+.+ |++ .-|...+
T Consensus 144 ~~~q~D~~Fa~EFI~------------~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 144 QIFQEDKDLVPEFVH------------SEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHTCTTHHHHHHH------------TTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHhhcchHHHHHHHH------------hccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHH
Q ss_pred cCCCcchhhhhhHHHHHHHhcChHHHHHHHHh------cCCcchHHHHHHHHh--ccCChhHHHHHHHHHHHhcCCCCCC
Q 002889 370 QSQDKKLVLTGTDILILFLNQDPNLLRSYVVR------QEGIPLLGLLVKGMI--TDFGEDMHCQFLEILRSLLDSYTLS 441 (870)
Q Consensus 370 ~~~d~~ir~~atDILv~iiehdP~lvR~~i~~------qe~~~Ll~~Li~~ll--~d~d~glk~Ql~eaLk~LLDp~~m~ 441 (870)
.+.+..|...|..||..+++++++.---..-. ..+.+.+..|+++|- ...|..++.-.+-.|..+|..-. +
T Consensus 212 ~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap-d 290 (339)
T 3dad_A 212 ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP-D 290 (339)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS-S
T ss_pred cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC-C
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHh
Q 002889 442 GAQRDTIIEIFYEKHLGQLIDVITA 466 (870)
Q Consensus 442 ~~e~d~FL~~FY~~~~~~L~~pL~~ 466 (870)
...+.++.+.+=...+...+...+.
T Consensus 291 ~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 291 QDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHh
No 107
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=23.49 E-value=2.1e+02 Score=33.46 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=70.9
Q ss_pred chhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHH
Q 002889 507 YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 586 (870)
Q Consensus 507 yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRFlR~iI~lkDefy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LEL 586 (870)
...|..|.....+...+.||++.+.-++-.|+..++++...+++-.-..|++.+.+.|++.++....+. .+...|+-=|
T Consensus 80 ~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-~~~e~aa~aL 158 (584)
T 3l6x_A 80 DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-DLTEVITGTL 158 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-HHHHHHHHHH
T ss_pred hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-HHHHHHHHHH
Confidence 345778888899999999999999999999999999998764455788899999999999998764332 2333333222
Q ss_pred H---------HHHHhhChHHHHHHHH
Q 002889 587 F---------EYIRKENLKSLVKYIV 603 (870)
Q Consensus 587 f---------efIr~eNik~Li~hlV 603 (870)
+ .-|..+.+..|+..|.
T Consensus 159 ~nLS~~~~~k~~I~~~alp~Lv~LL~ 184 (584)
T 3l6x_A 159 WNLSSHDSIKMEIVDHALHALTDEVI 184 (584)
T ss_dssp HHHTTSGGGHHHHHHHTHHHHHHHTH
T ss_pred HHHhCCchhhHHHHhccHHHHHHHHh
Confidence 2 2233566777887764
No 108
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=23.16 E-value=3.6e+02 Score=25.33 Aligned_cols=106 Identities=6% Similarity=0.050 Sum_probs=68.2
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002889 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (870)
Q Consensus 311 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iieh 390 (870)
.++..+..++....+. ...+-++|.+.++-+...|.. ..+|..-|++.++.+...|..+|-+|+.+
T Consensus 7 d~~iekAT~~~l~~~d----w~~ileicD~I~~~~~~~k~a----------~rai~Krl~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 7 DQDVEKATSEMNTAED----WGLILDICDKVGQSRTGPKDC----------LRSIMRRVNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HHHHHHHTCTTSSSCC----HHHHHHHHHHHTTSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcC----HHHHHHHHHHHHCCCcCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3455556655433222 445678898887655455544 34566677888888888888888888887
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002889 391 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (870)
Q Consensus 391 dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (870)
--..++.-+.+ ..+++.|++.+ ...++.++..+.+.+..+
T Consensus 73 cG~~f~~evas---~~Fl~el~~l~-~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 73 CGKIFHLEVCS---RDFASEVSNVL-NKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp SCHHHHHHHSS---HHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 65555543433 33777776644 557777777777776655
No 109
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=22.88 E-value=5e+02 Score=24.77 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=74.6
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002889 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (870)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iie 389 (870)
+.++..+..++....+. ...+-|+|.+.+.-+...|.. ..+|..-|++.++.+...|..+|-+|+.
T Consensus 12 ~~~~IekATs~~l~~~d----w~~ileicD~I~~~~~~pk~a----------~ral~krl~~~n~~v~l~AL~LLe~cvk 77 (149)
T 3g2s_A 12 LEARINRATNPLNKELD----WASINGFCEQLNEDFEGPPLA----------TRLLAHKIQSPQEWEAIQALTVLETCMK 77 (149)
T ss_dssp HHHHHHHHSCTTCSSCC----HHHHHHHHHHGGGSSSHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHHCCCCcHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45566666666543322 345678898877665555554 3466677788999998889999988888
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhHHHHHHHHHHHhcC
Q 002889 390 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLLD 436 (870)
Q Consensus 390 hdP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LLD 436 (870)
+--..++.-+.+ ..+++.|++.+-. ..+..++..+.+.|..+=+
T Consensus 78 NCG~~fh~eias---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 78 SCGKRFHDEVGK---FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HCCHHHHHHHTS---HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhh---HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 877766654443 3478888876642 3567788888777776643
No 110
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.57 E-value=3.8e+02 Score=25.53 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=70.3
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002889 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (870)
Q Consensus 311 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iieh 390 (870)
.++..+..++....+.+ ..+-++|.+.++-+...|.. ..+|..-|++.++.+...|..+|=+|+.+
T Consensus 3 ~~~iekATs~~l~~~dw----~~~leicD~I~~~~~~~k~a----------~rai~krl~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 3 ELWLNKATDPSMSEQDW----SAIQNFCEQVNTDPNGPTHA----------PWLLAHKIQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHCTTCSSCCH----HHHHHHHHHHHHSSHHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCH----HHHHHHHHHHHcCCccHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34455555544332222 33458888877665555554 35666777899999999999999999988
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhHHHHHHHHHHHhc
Q 002889 391 DPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 435 (870)
Q Consensus 391 dP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LL 435 (870)
--..++..+.+ ..+++.|++.+-. ..+..++..+.+.|..+=
T Consensus 69 CG~~fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 69 CGEKFHSEVAK---FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp SCHHHHHHHTS---HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 66656554443 3588888775432 146677877777777664
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=21.90 E-value=1.1e+03 Score=28.21 Aligned_cols=272 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh----------CCCC----CcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH---
Q 002889 307 STFIQELFARL----------RSPT----TLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL--- 369 (870)
Q Consensus 307 ~~FL~eLF~~l----------~~~~----~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L--- 369 (870)
..+++-+|. + ++.. .+++-|..++..|.++...... ..+..++..++ .+++.+.....
T Consensus 228 ~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~---~~~~~~~~~l~-~~~~~~~~~~~~~~ 302 (971)
T 2x1g_F 228 VTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC---HNYPKTAFVLI-KMFLDSLSEITKTE 302 (971)
T ss_dssp HHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG---GGCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc---cccHHHHHHHH-HHHHHhHHHHHHHH
Q ss_pred cCCCc---chhhhhhHHHHHHHhcChHHHH-----------HHHHhcCCcchHHHHHHHHhc----cCChhHHHHHHHHH
Q 002889 370 QSQDK---KLVLTGTDILILFLNQDPNLLR-----------SYVVRQEGIPLLGLLVKGMIT----DFGEDMHCQFLEIL 431 (870)
Q Consensus 370 ~~~d~---~ir~~atDILv~iiehdP~lvR-----------~~i~~qe~~~Ll~~Li~~ll~----d~d~glk~Ql~eaL 431 (870)
...|. ......++++..+.+..+.++. .++.. ++..|...+-. ..+..+..+.++.+
T Consensus 303 ~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~l~~ll~~~~~~~~~~~~~~v~~~~l~fw 377 (971)
T 2x1g_F 303 WKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHR-----IVQEILHCTDKPGIYPVEESCSTMALAFW 377 (971)
T ss_dssp SSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHH-----HHHHHHHHHHCSSCTTTTCTTHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHH-----HHHHHHHHHcCCCCCCcchhhhHHHHHHH
Q ss_pred HHhcC-CCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcH----------------------
Q 002889 432 RSLLD-SYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKP---------------------- 488 (870)
Q Consensus 432 k~LLD-p~~m~~~e~d~FL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~---------------------- 488 (870)
-.|.+ -..+....+..-....|..++..|+..++.. ..+...
T Consensus 378 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------------~~~p~~~~~~~~d~~e~~~f~~~R~~~~ 442 (971)
T 2x1g_F 378 YMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK---------------SEQPDEKSLAKWSSDDLECFRCYRQDIS 442 (971)
T ss_dssp HHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH---------------TSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH---------------hcCCCcccccccCHhHHHHHHHHHHHHH
Q ss_pred ------------HHHHHHHHHHHHHHhh-----ccchhhhHHhh-------------hhHHHHHHHhh-----hccchhh
Q 002889 489 ------------EILSNICELLCFCVLH-----HPYRIKCNFLL-------------NNVVDKVLLLT-----RRREKYL 533 (870)
Q Consensus 489 ------------~ll~~l~ELL~FcV~~-----H~yriK~~il~-------------~nll~rVl~Ll-----~~~~K~L 533 (870)
.++..+++.+.=.+.+ -..+-+.-.+. ...+.+++.++ ...+..+
T Consensus 443 ~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~v 522 (971)
T 2x1g_F 443 DTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKL 522 (971)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHH
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHhc-CChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh--hChHHHHHHHHHHhHhhc
Q 002889 534 VVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK--ENLKSLVKYIVDSFWNQL 610 (870)
Q Consensus 534 ~LaAlRFlR~iI~lkDefy~ryiIk~-nLf~PIl~~f~~ng~R~NLLnSA~LELfefIr~--eNik~Li~hlVe~y~~~l 610 (870)
+.+|+.++-+ |..++-++ ..+.||+..+....+ ..+-..||.-|-.+++. +.+.+.+..|++++.+.+
T Consensus 523 r~~a~~~l~~--------~~~~l~~~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l 593 (971)
T 2x1g_F 523 LGTALETMGS--------YCNWLMENPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASL 593 (971)
T ss_dssp HHHHHHHHHH--------THHHHC----CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHhcCHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q ss_pred cc
Q 002889 611 VN 612 (870)
Q Consensus 611 ~~ 612 (870)
.+
T Consensus 594 ~~ 595 (971)
T 2x1g_F 594 NT 595 (971)
T ss_dssp HS
T ss_pred cC
No 112
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.73 E-value=9.6e+02 Score=27.59 Aligned_cols=120 Identities=13% Similarity=0.225 Sum_probs=74.9
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcChH-HHHHHHHhcCCcchHHHHHHHHhcc-CChh-HHHHHHHHHHHhcCCCC
Q 002889 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPN-LLRSYVVRQEGIPLLGLLVKGMITD-FGED-MHCQFLEILRSLLDSYT 439 (870)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDILv~iiehdP~-lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~g-lk~Ql~eaLk~LLDp~~ 439 (870)
+.|..+|.+.+..+..++|+|+. .-.|. ++ .+..++.+|.+.+.++ +..| +-+++=-+++.|-.
T Consensus 119 e~i~~aL~S~~~~l~~~~ckVI~---~s~pk~lf-------a~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss--- 185 (500)
T 3vld_A 119 EDLVKALRSEIDPLKVAACRVIE---NSQPKGLF-------ATSNIIDILLDILFDEKVENDKLITAIEKALERLST--- 185 (500)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHH---TCSSGGGG-------TTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhcCChHHHHHHHHHhc---ccCchhHh-------ccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc---
Confidence 45566777778888888888876 22222 11 2467888888888774 5667 88888778887721
Q ss_pred CCchhhhHHHH-HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhh---ccchhhhHHhh
Q 002889 440 LSGAQRDTIIE-IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLH---HPYRIKCNFLL 515 (870)
Q Consensus 440 m~~~e~d~FL~-~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~FcV~~---H~yriK~~il~ 515 (870)
+++++ -..+.+. |++... . +...+-+++.++|+|.-+.++ +.++-+.|++.
T Consensus 186 ------deLirrril~nnl-----~lL~~v-----K---------~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~ 240 (500)
T 3vld_A 186 ------DELIRRRLFDNNL-----PYLVSV-----K---------GRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFT 240 (500)
T ss_dssp ------SHHHHHHHHTTTH-----HHHHHH-----H---------HHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCC
T ss_pred ------hHHHHHHHHHHhH-----HHHHHH-----h---------cCCCceeHHHHHHHHHHHhcccCcccCCcceeecc
Confidence 11111 1223343 333310 0 012455788899999888554 78998889998
Q ss_pred hhHHH
Q 002889 516 NNVVD 520 (870)
Q Consensus 516 ~nll~ 520 (870)
++-+.
T Consensus 241 ~~Ei~ 245 (500)
T 3vld_A 241 KEEIL 245 (500)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87443
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.46 E-value=5.9e+02 Score=28.19 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002889 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (870)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~i 387 (870)
.||.++++.-.++ +.+-|+-++.||.|-|.- ..+.. --++++|...|.++|+.+.-.++....++
T Consensus 63 ~fl~~il~f~~d~--~~~vRk~~a~FieEa~~~--~~el~-----------~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADK--SIEVRKFVIGFIEEACKR--DIELL-----------LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCS--CHHHHHHHHHHHHHHHHH--CGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--cHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5777777655544 467899999999999952 11111 11345666667777766554444444443
Q ss_pred HhcChHHHH
Q 002889 388 LNQDPNLLR 396 (870)
Q Consensus 388 iehdP~lvR 396 (870)
- |..+|
T Consensus 128 Y---pl~f~ 133 (386)
T 3o2t_A 128 Y---KVALQ 133 (386)
T ss_dssp H---HHHHH
T ss_pred H---HHHHH
Confidence 2 55555
No 114
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=20.17 E-value=6.7e+02 Score=27.39 Aligned_cols=132 Identities=11% Similarity=0.175 Sum_probs=81.2
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcC-hHH----HHHH
Q 002889 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD-PNL----LRSY 398 (870)
Q Consensus 324 ~e~rrdlV~FL~E~c~lsK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDILv~iiehd-P~l----vR~~ 398 (870)
.....++++-|+.+++. +..+-.-+-....+..|..+|....+.+|..+++||..+.... |.- |-+.
T Consensus 134 ~~~q~~~l~CLkalmN~--------~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~A 205 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNN--------KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEA 205 (383)
T ss_dssp HHHHHHHHHHHHHHTSS--------HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--------hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHH
Confidence 34455666666666543 2233333445567889999999999999999999998877665 332 2222
Q ss_pred HHh---cCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 002889 399 VVR---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (870)
Q Consensus 399 i~~---qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~FL~~FY~~~~~~L~~pL 464 (870)
+-. ..+..-+..+++.|-...+..++...+-.+..|+.... +...|-..-.-|..-.+...+..|
T Consensus 206 l~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~-dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 206 MTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE-ELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCChHHHHHHH
Confidence 211 12334556677777655677888888888888887542 112333333445555566665554
Done!