Query 002894
Match_columns 869
No_of_seqs 119 out of 136
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj7_A Hypothetical protein (R 99.1 5.6E-11 1.9E-15 109.5 4.9 55 22-76 37-95 (104)
2 1wgl_A TOLL-interacting protei 97.4 0.00014 4.9E-09 60.9 5.1 43 20-62 5-48 (59)
3 2dhy_A CUE domain-containing p 97.4 0.0002 6.9E-09 61.5 6.0 41 22-62 16-57 (67)
4 1z96_A DNA-damage, UBA-domain 97.4 0.00015 5E-09 55.0 4.5 39 22-61 2-40 (40)
5 1vg5_A RSGI RUH-014, rhomboid 97.3 0.00027 9.2E-09 61.7 5.8 44 19-63 24-67 (73)
6 1ify_A HHR23A, UV excision rep 97.3 0.00017 5.9E-09 58.0 3.8 41 22-63 6-46 (49)
7 1otr_A Protein CUE2; protein-p 97.3 0.0002 6.9E-09 58.2 4.0 40 23-62 3-43 (49)
8 2cp9_A EF-TS, EF-TSMT, elongat 97.2 0.00029 9.9E-09 60.2 4.9 43 17-62 5-47 (64)
9 2g3q_A Protein YBL047C; endocy 97.2 0.0003 1E-08 54.7 4.6 37 25-62 5-41 (43)
10 2knz_A Ubiquilin-4; cytoplasm, 97.2 0.00029 1E-08 57.5 4.2 41 22-63 9-50 (53)
11 2jy5_A Ubiquilin-1; UBA, alter 97.0 0.00094 3.2E-08 54.4 5.7 40 22-62 10-50 (52)
12 2bwb_A Ubiquitin-like protein 97.0 0.00065 2.2E-08 54.2 4.3 39 23-62 6-45 (46)
13 2dah_A Ubiquilin-3; UBA domain 97.0 0.00067 2.3E-08 55.8 4.3 40 22-62 7-47 (54)
14 1wr1_B Ubiquitin-like protein 96.8 0.00076 2.6E-08 56.4 3.6 40 22-62 15-55 (58)
15 1wji_A Tudor domain containing 96.8 0.00098 3.4E-08 56.4 4.3 38 24-62 9-46 (63)
16 1vej_A Riken cDNA 4931431F19; 96.6 0.0019 6.6E-08 56.5 4.5 41 22-63 27-68 (74)
17 2dak_A Ubiquitin carboxyl-term 96.5 0.0021 7.3E-08 53.9 4.6 39 23-62 8-46 (63)
18 2di0_A Activating signal coint 96.5 0.0038 1.3E-07 54.4 5.7 42 22-63 11-53 (71)
19 2dna_A Unnamed protein product 96.3 0.003 1E-07 54.4 4.3 41 22-63 17-58 (67)
20 2ekk_A UBA domain from E3 ubiq 96.1 0.005 1.7E-07 48.8 4.3 40 21-62 6-45 (47)
21 2cwb_A Chimera of immunoglobul 96.0 0.0046 1.6E-07 57.6 4.1 41 22-63 64-105 (108)
22 1veg_A NEDD8 ultimate buster-1 96.0 0.0052 1.8E-07 54.9 4.1 38 24-62 29-66 (83)
23 1wiv_A UBP14, ubiquitin-specif 95.9 0.0055 1.9E-07 53.2 4.1 39 23-62 28-66 (73)
24 2cpw_A CBL-interacting protein 95.9 0.013 4.6E-07 49.5 6.0 42 18-62 15-57 (64)
25 1dv0_A DNA repair protein HHR2 95.7 0.0087 3E-07 47.9 4.0 40 23-63 3-42 (47)
26 2ooa_A E3 ubiquitin-protein li 95.7 0.0092 3.2E-07 49.1 4.1 41 21-62 8-48 (52)
27 2qsf_X RAD23, UV excision repa 95.7 0.0078 2.7E-07 60.1 4.5 46 17-63 123-168 (171)
28 1whc_A RSGI RUH-027, UBA/UBX 3 95.2 0.0087 3E-07 50.6 2.6 37 25-62 10-47 (64)
29 2dai_A Ubadc1, ubiquitin assoc 95.2 0.014 4.9E-07 51.8 4.1 39 23-62 28-66 (83)
30 2dag_A Ubiquitin carboxyl-term 95.2 0.015 5E-07 50.6 4.0 39 23-62 8-47 (74)
31 2d9s_A CBL E3 ubiquitin protei 95.0 0.021 7.3E-07 47.2 4.3 40 22-62 7-46 (53)
32 2dkl_A Trinucleotide repeat co 94.9 0.022 7.7E-07 50.8 4.4 37 25-62 22-58 (85)
33 2juj_A E3 ubiquitin-protein li 94.4 0.036 1.2E-06 46.1 4.2 42 20-62 3-44 (56)
34 2qho_B E3 ubiquitin-protein li 94.1 0.054 1.9E-06 44.2 4.5 45 17-64 5-50 (53)
35 2lbc_A Ubiquitin carboxyl-term 93.7 0.051 1.8E-06 50.9 4.4 39 23-62 77-115 (126)
36 3k9o_A Ubiquitin-conjugating e 93.7 0.047 1.6E-06 54.9 4.3 40 22-62 161-200 (201)
37 2crn_A Ubash3A protein; compac 93.6 0.028 9.6E-07 47.6 2.1 37 25-62 10-47 (64)
38 1aip_C EF-TS, elongation facto 93.5 0.047 1.6E-06 55.6 3.9 39 24-62 3-41 (196)
39 2lva_A Ubiquitin carboxyl-term 92.5 0.014 4.9E-07 55.5 0.0 46 17-62 11-57 (129)
40 1vdl_A Ubiquitin carboxyl-term 93.3 0.082 2.8E-06 46.5 4.6 41 22-62 22-63 (80)
41 1xb2_B EF-TS, elongation facto 93.0 0.058 2E-06 57.7 3.9 39 24-62 4-42 (291)
42 2ejs_A Autocrine motility fact 92.9 0.09 3.1E-06 44.2 4.1 42 22-64 11-53 (58)
43 1oqy_A HHR23A, UV excision rep 92.8 0.062 2.1E-06 59.0 4.0 42 21-63 165-206 (368)
44 2dal_A Protein KIAA0794; FAS a 92.8 0.16 5.5E-06 42.6 5.5 47 16-62 7-53 (62)
45 2ekf_A Ancient ubiquitous prot 92.7 0.13 4.5E-06 43.7 4.9 42 22-64 11-53 (61)
46 1oqy_A HHR23A, UV excision rep 92.5 0.1 3.5E-06 57.3 5.1 45 17-62 318-362 (368)
47 4g3o_A E3 ubiquitin-protein li 92.1 0.091 3.1E-06 44.2 3.1 44 19-63 12-56 (58)
48 4ae4_A Ubiquitin-associated pr 92.0 0.13 4.6E-06 48.3 4.6 38 24-62 76-113 (118)
49 3e46_A Ubiquitin-conjugating e 92.0 0.1 3.6E-06 54.6 4.3 41 21-62 212-252 (253)
50 1vek_A UBP14, ubiquitin-specif 91.8 0.16 5.5E-06 45.1 4.6 41 21-62 26-67 (84)
51 1p3q_Q VPS9P, vacuolar protein 91.5 0.078 2.7E-06 44.0 2.1 40 23-62 11-51 (54)
52 2oo9_A E3 ubiquitin-protein li 91.4 0.21 7.1E-06 40.3 4.3 38 24-62 4-41 (46)
53 3e21_A HFAF1, FAS-associated f 91.3 0.14 4.7E-06 41.0 3.2 40 22-61 3-43 (45)
54 1v92_A NSFL1 cofactor P47; 3-h 91.1 0.21 7.2E-06 38.7 4.1 40 23-62 4-43 (46)
55 2dam_A ETEA protein; KIAA0887, 90.8 0.33 1.1E-05 41.4 5.4 45 18-62 12-57 (67)
56 1tr8_A Conserved protein (MTH1 90.0 0.21 7.3E-06 46.0 3.8 36 25-60 66-101 (102)
57 2cp8_A NEXT to BRCA1 gene 1 pr 89.8 0.33 1.1E-05 40.3 4.4 39 23-62 8-47 (54)
58 1wgn_A UBAP1, ubiquitin associ 89.8 0.23 7.9E-06 42.3 3.5 44 18-62 13-56 (63)
59 4ae4_A Ubiquitin-associated pr 86.9 0.52 1.8E-05 44.3 4.2 42 20-62 4-45 (118)
60 2lbc_A Ubiquitin carboxyl-term 84.8 0.57 2E-05 43.8 3.4 37 25-62 4-41 (126)
61 3avx_A Elongation factor TS, e 81.4 0.28 9.7E-06 61.3 -0.1 37 26-62 7-43 (1289)
62 1ufz_A Hypothetical protein BA 75.2 1.8 6.2E-05 38.8 3.1 38 26-63 36-75 (83)
63 2dzl_A Protein FAM100B; UBA-li 68.9 4.9 0.00017 34.2 4.2 37 26-62 19-55 (66)
64 2pwq_A Ubiquitin conjugating e 67.0 1.2 4E-05 45.7 0.0 40 23-63 176-215 (216)
65 2l3n_A DNA-binding protein RAP 66.3 13 0.00044 33.2 6.4 41 22-62 9-52 (104)
66 2gpi_A Conserved hypothetical 52.6 5.6 0.00019 36.0 1.8 40 29-68 39-81 (91)
67 1x4c_A Splicing factor, argini 50.8 14 0.00047 32.3 4.1 15 36-50 26-40 (108)
68 2jz1_A Protein doublesex; sex 47.3 10 0.00034 33.7 2.5 39 24-62 9-50 (80)
69 1tte_A Ubiquitin-conjugating e 45.0 13 0.00044 38.0 3.3 38 24-62 169-211 (215)
70 2cos_A Serine/threonine protei 37.7 25 0.00085 29.3 3.3 40 22-62 7-47 (54)
71 1zv1_A Doublesex protein; UBA 35.9 19 0.00067 30.8 2.4 40 24-63 9-51 (65)
72 1oai_A Nuclear RNA export fact 35.8 34 0.0012 28.5 3.9 39 22-60 5-43 (59)
73 1nri_A Hypothetical protein HI 35.6 12 0.0004 39.4 1.4 45 25-69 245-289 (306)
74 2dk8_A DNA-directed RNA polyme 29.3 18 0.00061 32.2 1.2 51 19-71 10-65 (81)
75 1aua_A Phosphatidylinositol tr 27.8 42 0.0014 34.5 3.9 45 18-62 24-75 (296)
76 1olm_A SEC14-like protein 2; l 26.3 50 0.0017 35.6 4.3 45 18-62 6-58 (403)
77 4dbg_B Ring finger protein 31; 24.3 61 0.0021 32.2 4.1 31 29-59 104-137 (162)
78 2xag_B REST corepressor 1; ami 22.1 19 0.00064 41.2 0.0 32 31-62 153-184 (482)
79 3q8g_A CRAL-TRIO domain-contai 21.0 71 0.0024 33.8 4.2 45 18-62 33-84 (320)
80 3u5c_h Suppressor protein STM1 20.8 21 0.00071 38.1 0.0 7 22-28 100-106 (273)
No 1
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.09 E-value=5.6e-11 Score=109.55 Aligned_cols=55 Identities=29% Similarity=0.386 Sum_probs=49.5
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcCC----Cccccccccccc
Q 002894 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRDKR 76 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q~----~~~EVkkKr~kk 76 (869)
++++++|+.|+|++|++++++..||.+||+|+++||++|+++. .|++|+|||++.
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~~~~kKk~~~ 95 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVS 95 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCCSS
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCceeeeccccccc
Confidence 5789999999999999999999999999999999999999873 699997765443
No 2
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.43 E-value=0.00014 Score=60.92 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=41.3
Q ss_pred CCcchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 20 IPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 20 ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.|.-+++.|+.|||+| +.+++-|-.+|+.|++|++.||+.||+
T Consensus 5 ~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6778899999999999 999999999999999999999999998
No 3
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=0.0002 Score=61.55 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=39.7
Q ss_pred cchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.++++.|+.||||| +...+.|..+|+.|++|++.||+.||+
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 68999999999999 999999999999999999999999996
No 4
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.40 E-value=0.00015 Score=54.98 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=35.9
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhh
Q 002894 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL 61 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl 61 (869)
++.+++|++|+++ |.+++++..||+.|++|++.|++.|+
T Consensus 2 ~~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4678899999999 99999999999999999999999885
No 5
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.33 E-value=0.00027 Score=61.66 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=40.5
Q ss_pred cCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 19 SIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 19 ~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
.....++++|++|+|| |++++++..||+.|++|++.|++.|+++
T Consensus 24 ~~~~~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CCSCCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCCcccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3556789999999999 9999999999999999999999999973
No 6
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.28 E-value=0.00017 Score=57.98 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=38.0
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
...+++|++|.|| |++++++..||+.|++|++.|++.|+++
T Consensus 6 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3578899999999 9999999999999999999999999973
No 7
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.26 E-value=0.0002 Score=58.19 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=38.4
Q ss_pred chHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+.+++|+.|.||| .++.++|-.+|+.|+||.++||+.||+
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5689999999999 999999999999999999999999997
No 8
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.24 E-value=0.00029 Score=60.19 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=37.6
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
...|+. +.|+.|+|.+|.+..||..||.|||+|+++||..|-+
T Consensus 5 ~~~it~---~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 5 SSGSSK---ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp SSCCCC---HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCCH---HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345654 7899999999999999999999999999999997744
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.23 E-value=0.0003 Score=54.68 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=35.3
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+++|++|++| |.+++++..||+.|++|++.|++.|++
T Consensus 5 e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 6889999998 999999999999999999999999987
No 10
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=97.18 E-value=0.00029 Score=57.49 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=37.5
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
..++++|++|+|| |+ .++.+..||+.|++|++.||+.|++.
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4578899999999 99 88999999999999999999999973
No 11
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=97.01 E-value=0.00094 Score=54.37 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=36.9
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..++++|++|+|| |+ .++.+..||+.|++|++.||+.|+.
T Consensus 10 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 10 VRFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4578999999999 99 7888999999999999999999987
No 12
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.98 E-value=0.00065 Score=54.20 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=34.6
Q ss_pred chHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.++++|++|++| |.+ ++.++.||+.|++|++.||+.|++
T Consensus 6 ~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 468899999999 876 455899999999999999999986
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.95 E-value=0.00067 Score=55.85 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=36.7
Q ss_pred cchHHHHHhhhhccCCChHH-HHHHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIVNCPESE-IYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seed-i~~aL~ecn~D~n~Av~rLl~ 62 (869)
..++++|++|+|| |.++++ ++.||+.|++|++.||++|++
T Consensus 7 ~~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4679999999999 998876 699999999999999999996
No 14
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.81 E-value=0.00076 Score=56.40 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=35.6
Q ss_pred cchHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..++++|++|+|| |.+ ++.++.||+.|++|++.||++|++
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4578899999999 865 667799999999999999999997
No 15
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.80 E-value=0.00098 Score=56.40 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=35.9
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
-+++|++|++| |++++++..||+.|++|++.|++.|++
T Consensus 9 ~~~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 9 DEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 37889999998 999999999999999999999999998
No 16
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.56 E-value=0.0019 Score=56.49 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=36.6
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
..++++|++|+|| |. .++.++.||+.|++|++.||++|+..
T Consensus 27 ~~ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 27 GRYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp TTSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4578999999999 86 46888999999999999999999973
No 17
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.0021 Score=53.95 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=36.4
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
-.+++|++|.+| |++++++..||+.|++|++.|++.|++
T Consensus 8 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999998 999999999999999999999999997
No 18
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.46 E-value=0.0038 Score=54.36 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=40.5
Q ss_pred cchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
++.+.+|.+|||+| ++.+.=|.+.|+.+|.|++.+|+.|||.
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 68899999999999 9999999999999999999999999994
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.34 E-value=0.003 Score=54.45 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=35.0
Q ss_pred cchHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
..++++|++|++| |.+ ++.++.||+.|++|++.||++|++.
T Consensus 17 ~~y~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 17 VRFSKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4467899999998 765 5566999999999999999999973
No 20
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.005 Score=48.77 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=36.2
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
|.-.+++|++|.+| |++++.+..||+.|+ |++.|++.|++
T Consensus 6 ~~~~~~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 44568899999998 999999999999997 99999999986
No 21
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=96.00 E-value=0.0046 Score=57.64 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=36.4
Q ss_pred cchHHHHHhhhhccCCC-hHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
..++++|++|+|| |.+ ++.++.||+.|++|++.||++|++.
T Consensus 64 ~~~~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 64 SQWQPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp CTTHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3568999999999 875 4799999999999999999999974
No 22
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.97 E-value=0.0052 Score=54.89 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=36.5
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.+++|++|.+| |++++.+..||+.|++|++.|++.|+.
T Consensus 29 ~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 58899999999 999999999999999999999999997
No 23
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.94 E-value=0.0055 Score=53.16 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=36.6
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
-.+++|++|++| |.+++.+..||+.|++|++.||+.|++
T Consensus 28 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 28 IDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp SCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 457889999999 999999999999999999999999997
No 24
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.86 E-value=0.013 Score=49.52 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=37.0
Q ss_pred ccCCcchHHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHHhhc
Q 002894 18 SSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (869)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~Av~rLl~ 62 (869)
+.||. +++|++|.+| |++++.+..||+.|++ |++.|++.|++
T Consensus 15 a~~~~--e~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 15 GTIKH--GSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CSSSC--CCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred cccCC--HHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 44543 4679999998 9999999999999998 99999999997
No 25
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=95.71 E-value=0.0087 Score=47.86 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=36.7
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
.-++.|++|+++ |.++..++.||..|+.|++.|++.|++.
T Consensus 3 ~e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 3 QEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp CCHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred chHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 457889999998 9999999999999999999999999973
No 26
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=95.68 E-value=0.0092 Score=49.14 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=36.1
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
|...++.|++|+++ |.+.+|++.||+-|++|++.|.+.|||
T Consensus 8 ~~~~~~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 8 LENVDAKIAKLMGE-GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp ---CHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45566899999998 999999999999999999999999997
No 27
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=95.68 E-value=0.0078 Score=60.06 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=42.3
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
...+...-|++|+.|+++ |++++.++.||..|+.|++.|++.||+.
T Consensus 123 ~i~~tpee~eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 123 QVDYTPEDDQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CCCCCHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred cCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456778889999999999 9999999999999999999999999983
No 28
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.21 E-value=0.0087 Score=50.62 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhc-CCCHHHHHHHhhc
Q 002894 25 RKIVQSLKEIVNCPESEIYAMLKEC-NMDPNEAVNRLLS 62 (869)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ec-n~D~n~Av~rLl~ 62 (869)
+++|++|.+| |++++.+..||+.| |+|++.|++.|++
T Consensus 10 ~~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 5678999998 99999999999999 7999999999997
No 29
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.21 E-value=0.014 Score=51.84 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=36.4
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
-.+++|++|.+| |++++.+..||+.|++|++.|++.|++
T Consensus 28 ~~e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 28 VDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 357889999998 999999999999999999999999997
No 30
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.19 E-value=0.015 Score=50.63 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~Av~rLl~ 62 (869)
--+++|++|.+| |++++.+..||+.|++ |++.|++.|++
T Consensus 8 ~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 8 LDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp SCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 457899999998 9999999999999996 99999999997
No 31
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.03 E-value=0.021 Score=47.19 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=35.9
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
...+..|++|.++ |.+.+|++.||.-|++|++.|.+.|++
T Consensus 7 ~~~e~~I~~L~~l-GF~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 7 GQLSSEIERLMSQ-GYSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SCSHHHHHHHHHH-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHc-CCCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455678888888 999999999999999999999999997
No 32
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.88 E-value=0.022 Score=50.84 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=35.5
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+++|++|.+| |++++.+..||+.|++|++.|++.|++
T Consensus 22 ~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7889999998 999999999999999999999999998
No 33
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=94.41 E-value=0.036 Score=46.13 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=38.6
Q ss_pred CCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 20 IPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 20 ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.|+-.++.|..|.++ |.+.+|+..||.-|+.|+|.|.++|||
T Consensus 3 ~~~p~e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 3 ASPQLSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp CCHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHc-CCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 355678899999998 999999999999999999999999998
No 34
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=94.10 E-value=0.054 Score=44.21 Aligned_cols=45 Identities=36% Similarity=0.481 Sum_probs=36.1
Q ss_pred cccCCcchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhcCC
Q 002894 17 ISSIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (869)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~q~ 64 (869)
+..|| ++.|.+...++ |++.+-|+.-|+-+|.|+|+||+-||+.|
T Consensus 5 ~~~vP---e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 5 ASVIP---EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp GGGSC---HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred cccCc---HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 44566 45566666677 99999999999999999999999999853
No 35
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=93.72 E-value=0.051 Score=50.86 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=36.2
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..+++|++|.+| |++++.+..||+.|++|++.|++.|+.
T Consensus 77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999998 999999999999999999999999997
No 36
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=93.67 E-value=0.047 Score=54.87 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=37.8
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.+++++|++|+|| |..++++..||..|+.|++.|+++|++
T Consensus 161 ~~~eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 161 PEYTKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4679999999999 999999999999999999999999986
No 37
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.59 E-value=0.028 Score=47.65 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHHhhc
Q 002894 25 RKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (869)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~Av~rLl~ 62 (869)
++.|++|.+| |++++.+..||+-|++ |++.|++.|++
T Consensus 10 e~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 10 PSLLEPLLAM-GFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp CSSHHHHHHT-SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 4578999997 9999999999999976 99999999997
No 38
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=93.48 E-value=0.047 Score=55.59 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=35.4
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.-+.|+.|||.||..--||..||.|||+|.+.||+.|-+
T Consensus 3 ~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 3 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346899999999999999999999999999999997754
No 39
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.47 E-value=0.014 Score=55.45 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=40.1
Q ss_pred cccCCcchHHHHHhhhhccCCChHH-HHHHHhhcCCCHHHHHHHhhc
Q 002894 17 ISSIPAGSRKIVQSLKEIVNCPESE-IYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seed-i~~aL~ecn~D~n~Av~rLl~ 62 (869)
+-..|...+..+.+||||||..|.+ +..||+.||||+.+||..|.+
T Consensus 11 ~~~~~~~~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 11 RENLYFQGQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 4457778889999999999999655 568999999999999999988
No 40
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.34 E-value=0.082 Score=46.54 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=37.1
Q ss_pred cchHHHHHhhhhccCCChHHHH-HHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIVNCPESEIY-AMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~-~aL~ecn~D~n~Av~rLl~ 62 (869)
.+-+..+.+||||+|..|..|+ .||+..++|+.+||-.|.+
T Consensus 22 ~~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 22 KHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp SCHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 3567799999999999998876 6999999999999999998
No 41
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=93.01 E-value=0.058 Score=57.75 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=35.5
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.-+.|+.|||.||..--||.+||.|||+|.+.|++.|-+
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999997654
No 42
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.93 E-value=0.09 Score=44.23 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=38.8
Q ss_pred cchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhcCC
Q 002894 22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (869)
Q Consensus 22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~q~ 64 (869)
.....+|.+|+||| ..+.+.|..-|+.++ .++.+|+|||++.
T Consensus 11 ~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp CHHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 46788999999999 999999999999988 9999999999964
No 43
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=92.84 E-value=0.062 Score=59.03 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=39.1
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
...++++|++|.+| ||++++|..||+-|++|+++||+.|+++
T Consensus 165 g~~~~~~i~~l~~M-Gf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 165 GSEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp TTTHHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred CcchHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35689999999999 9999999999999999999999999984
No 44
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.80 E-value=0.16 Score=42.57 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=42.9
Q ss_pred CcccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 16 GISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 16 ~~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+....+...+++|++.++|++++++...+.|+.|+.|++.||....+
T Consensus 7 ~~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 7 GGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp CCCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred chhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45677888999999999999999999999999999999999997765
No 45
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.73 E-value=0.13 Score=43.67 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=38.7
Q ss_pred cchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhcCC
Q 002894 22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (869)
Q Consensus 22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~q~ 64 (869)
.....+|.+|+||| ..+.+.|..-|..++ .++.+|++||++.
T Consensus 11 ~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGA 53 (61)
T ss_dssp CCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 46788999999999 999999999998887 9999999999954
No 46
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=92.47 E-value=0.1 Score=57.32 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=40.9
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
...+-..-++.|..|++| |++++.++.||..|+.|++.|++.|++
T Consensus 318 ~i~~t~ee~eaI~rL~~m-GF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 318 YIQVTPQEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp SCCCCTTTHHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 345667889999999999 999999999999999999999999997
No 47
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=92.09 E-value=0.091 Score=44.24 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=40.0
Q ss_pred cCCcchHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 19 SIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 19 ~ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
.++.....+|.+|++|| ..+.+.|..-|+.+ +.++.||+|||++
T Consensus 12 ~~~sql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 12 YFQGQLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 35667789999999999 99999999999988 8999999999984
No 48
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.04 E-value=0.13 Score=48.29 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=34.9
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+.+.|.+|+|| |.+++.|.+||+.|++|++.|++-|+.
T Consensus 76 ~~~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55679999999 999999999999999999999998875
No 49
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=92.01 E-value=0.1 Score=54.64 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=38.3
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..+++++|+.|+|+ |..+++++.||..||.|++.|+++|++
T Consensus 212 ~~~~~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 212 SPEYTKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34789999999999 999999999999999999999999986
No 50
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=91.83 E-value=0.16 Score=45.12 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=36.6
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHhhcC-CCHHHHHHHhhc
Q 002894 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECN-MDPNEAVNRLLS 62 (869)
Q Consensus 21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn-~D~n~Av~rLl~ 62 (869)
+.-.+++|++|.+| |++++.+..||+.|+ +|++.|++.|++
T Consensus 26 ~~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 26 PVANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CCCCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33468899999998 999999999999885 899999999997
No 51
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=91.53 E-value=0.078 Score=44.02 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=32.5
Q ss_pred chHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.+++.|+.|++|| +...|=|-.+|..++|+.+.||+.||.
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5789999999999 999999999999999999999999986
No 52
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=91.38 E-value=0.21 Score=40.28 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=34.4
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.+..|..|.++ |.+.+|+..||.-|++|++.|.++|++
T Consensus 4 ~e~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 4 LSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHHT-TBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 46677777777 999999999999999999999999997
No 53
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=91.30 E-value=0.14 Score=41.01 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=36.1
Q ss_pred cchHHHHHhhhhccCCCh-HHHHHHHhhcCCCHHHHHHHhh
Q 002894 22 AGSRKIVQSLKEIVNCPE-SEIYAMLKECNMDPNEAVNRLL 61 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~se-edi~~aL~ecn~D~n~Av~rLl 61 (869)
.+..++|.+..+|||.++ +++.+.|..||.|++.||+..+
T Consensus 3 ~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 3 MDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred ccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 367899999999999998 9999999999999999998654
No 54
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=91.14 E-value=0.21 Score=38.74 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=36.6
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+.+++|++..+|++.+++.....|+.|+.|++.||....+
T Consensus 4 ~~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 4 ERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4678999999999999999999999999999999987654
No 55
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.84 E-value=0.33 Score=41.43 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=41.1
Q ss_pred ccCCcchHHHHHhhhhccC-CChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 18 SSIPAGSRKIVQSLKEIVN-CPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~~-~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..+..+.+++|++.++|++ .+++.+.+.|+.|+.|++.||....+
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678889999999999999 88999999999999999999997776
No 56
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=90.02 E-value=0.21 Score=46.02 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=33.2
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHh
Q 002894 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60 (869)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rL 60 (869)
.|.|..|++-+++|.++-..||++||+|+-+||-.|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 577999999999999999999999999999998765
No 57
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=89.83 E-value=0.33 Score=40.31 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=33.6
Q ss_pred chHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 23 GSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
-+..++++|.|| |. .++.-+.+|+.||+|++.||++||.
T Consensus 8 ~~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 8 QTAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp THHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 355678899998 65 6788899999999999999999995
No 58
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=89.79 E-value=0.23 Score=42.34 Aligned_cols=44 Identities=9% Similarity=0.216 Sum_probs=38.6
Q ss_pred ccCCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 18 SSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..+.+.-++.|.+|..| |.+++-..+||+.|++|+++|++-|.+
T Consensus 13 ~~ls~se~e~V~~LvsM-GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 13 QMLSPSERQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HTCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HhhCcchHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34566778889998877 999999999999999999999998875
No 59
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=86.91 E-value=0.52 Score=44.32 Aligned_cols=42 Identities=10% Similarity=0.260 Sum_probs=39.3
Q ss_pred CCcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 20 IPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 20 ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+.+.-++.|++|.+| |.+++.|..||+.|++|++.|++.|+.
T Consensus 4 l~~~e~~~v~~l~~M-GFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 4 MSPSERQCVETVVNM-GYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp SCHHHHHHHHHHHHT-TCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 567789999999999 999999999999999999999999986
No 60
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=84.81 E-value=0.57 Score=43.76 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=33.2
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcC-CCHHHHHHHhhc
Q 002894 25 RKIVQSLKEIVNCPESEIYAMLKECN-MDPNEAVNRLLS 62 (869)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn-~D~n~Av~rLl~ 62 (869)
.++|++|.+| |.+++.+..||+.|+ +|+++|++.|++
T Consensus 4 ~~~l~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 4 ESSVMQLAEM-GFPLEACRKAVYFTGNMGAEVAFNWIIV 41 (126)
T ss_dssp THHHHHHHTT-SSCCHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3678888887 999999999999995 599999999997
No 61
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=81.45 E-value=0.28 Score=61.29 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+.|+.|||.||..--||.+||.|||+|.++||+.|-+
T Consensus 7 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRk 43 (1289)
T 3avx_A 7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMRK 43 (1289)
T ss_dssp SCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999997643
No 62
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=75.21 E-value=1.8 Score=38.79 Aligned_cols=38 Identities=16% Similarity=0.379 Sum_probs=34.2
Q ss_pred HHHHhhhhcc--CCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 26 KIVQSLKEIV--NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 26 k~V~~ikEi~--~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
.-+.+||+|+ ..+|..++-|--.|++|++.|++.||++
T Consensus 36 SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 36 SCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3467899999 4899999999999999999999999975
No 63
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.87 E-value=4.9 Score=34.17 Aligned_cols=37 Identities=8% Similarity=0.262 Sum_probs=34.7
Q ss_pred HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
++|++..+|++++++.-.+.|+.++.|++.||....+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6899999999999999999999999999999998776
No 64
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=66.96 E-value=1.2 Score=45.71 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred chHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q 63 (869)
..+++|+.+.|+ |..+++++.||..|+.|++.|++.||++
T Consensus 176 ~~~~~v~~~~~m-gf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 176 PREVIIKKITEM-GFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp -----------------------------------------
T ss_pred chhhHHHHHHHc-CCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 357788888888 9999999999999999999999999973
No 65
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=66.29 E-value=13 Score=33.23 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=33.9
Q ss_pred cchHHH---HHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 22 AGSRKI---VQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~---V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..+|++ |..|-..++.+|...+.|++.+++-+..||-+||+
T Consensus 9 vnhrevdeaidnilrytnsteqqfleamestggrvriaiaklls 52 (104)
T 2l3n_A 9 VNHREVDEAIDNILRYTNSTEQQFLEAMESTGGRVRIAIAKLLS 52 (104)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHhccchHHHHHHHHHhcCCeeehHHHHHHh
Confidence 455554 55555555999999999999999999999999998
No 66
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=52.57 E-value=5.6 Score=36.03 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=33.4
Q ss_pred HhhhhccC---CChHHHHHHHhhcCCCHHHHHHHhhcCCCccc
Q 002894 29 QSLKEIVN---CPESEIYAMLKECNMDPNEAVNRLLSQDPFHE 68 (869)
Q Consensus 29 ~~ikEi~~---~seedi~~aL~ecn~D~n~Av~rLl~q~~~~E 68 (869)
..|.+.+| ..+++++++++++..|.++.+++||+...|.+
T Consensus 39 e~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e~~d~ 81 (91)
T 2gpi_A 39 KVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEAFDV 81 (91)
T ss_dssp HHHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHcccccc
Confidence 34556666 78999999999999999999999999866544
No 67
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.79 E-value=14 Score=32.32 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=12.5
Q ss_pred CCChHHHHHHHhhcC
Q 002894 36 NCPESEIYAMLKECN 50 (869)
Q Consensus 36 ~~seedi~~aL~ecn 50 (869)
+++++||...|..|+
T Consensus 26 ~~t~~~l~~~F~~~G 40 (108)
T 1x4c_A 26 SGSWQDLKDHMREAG 40 (108)
T ss_dssp SCCHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHHhcC
Confidence 778888888888886
No 68
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=47.30 E-value=10 Score=33.75 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=30.4
Q ss_pred hHHHHHhhhhccCCCh---HHHHHHHhhcCCCHHHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPE---SEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~se---edi~~aL~ecn~D~n~Av~rLl~ 62 (869)
+-+--+.|-|-|+.+= .=+|++|++.+.|++||..||-+
T Consensus 9 ll~~c~kLLEkF~YpWEMMpLMyVILK~a~~d~eeAsrrI~e 50 (80)
T 2jz1_A 9 FLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEASRRIEE 50 (80)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3445567888885553 35789999999999999999976
No 69
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=45.05 E-value=13 Score=38.00 Aligned_cols=38 Identities=13% Similarity=0.394 Sum_probs=31.9
Q ss_pred hHHHHHhhhhccCCChHHHHHHHhhcCCCH-----HHHHHHhhc
Q 002894 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDP-----NEAVNRLLS 62 (869)
Q Consensus 24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~-----n~Av~rLl~ 62 (869)
-+++|+.+.|| |..++.++.||.-|+.|. .+..+++||
T Consensus 169 ~~~~v~~~~~m-g~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 211 (215)
T 1tte_A 169 DHDLIDEFESQ-GFEKDKIVEVLRRLGVKSLDPNDNNTANRIIE 211 (215)
T ss_dssp SHHHHHHHHHH-TCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHH
T ss_pred cHHHHHHHHHc-CCCHHHHHHHHHHcCCCcccchhhhhHHHHHH
Confidence 37799999888 899999999999999998 556666665
No 70
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.66 E-value=25 Score=29.33 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=35.5
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCC-CHHHHHHHhhc
Q 002894 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~Av~rLl~ 62 (869)
...|+.+++|.|+ |+.++-...||+.+|. .++.|++.|+.
T Consensus 7 ~vn~qmlq~L~eM-GFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVNA-GCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHHH-HCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc-CCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6789999999999 9999999999999998 68888887764
No 71
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=35.86 E-value=19 Score=30.80 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=30.7
Q ss_pred hHHHHHhhhhccCCCh---HHHHHHHhhcCCCHHHHHHHhhcC
Q 002894 24 SRKIVQSLKEIVNCPE---SEIYAMLKECNMDPNEAVNRLLSQ 63 (869)
Q Consensus 24 ~rk~V~~ikEi~~~se---edi~~aL~ecn~D~n~Av~rLl~q 63 (869)
+-+--+.|-|-|+.+= .=.|++|++.+.|++||..||-++
T Consensus 9 Ll~~c~kLLEkf~YpWEmMpLMYVILK~A~~d~eeAsrrI~Eg 51 (65)
T 1zv1_A 9 FLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEASRRIEEG 51 (65)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHhHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3445567778885543 346899999999999999999873
No 72
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=35.84 E-value=34 Score=28.47 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=34.7
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHh
Q 002894 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60 (869)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rL 60 (869)
..-+++|..+.+.++.+-+=....|+||+-|.+.|+...
T Consensus 5 ~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 5 PEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 355788999999999999999999999999999999843
No 73
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=35.60 E-value=12 Score=39.43 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=11.8
Q ss_pred HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcCCCcccc
Q 002894 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEV 69 (869)
Q Consensus 25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~q~~~~EV 69 (869)
++-...|+++++++++++-.+|+.|++++-.||-.++.+-...|-
T Consensus 245 ~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~a 289 (306)
T 1nri_A 245 ARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILSTLSKSEA 289 (306)
T ss_dssp HHHHHHHHHHSCCCC------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHhCCCHHHH
Confidence 344677888899999999999999999999999877664344443
No 74
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=29.28 E-value=18 Score=32.20 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=34.6
Q ss_pred cCCcchHHHHHh-hhhcc-CCChHHHHHHHhhcCCCHH---HHHHHhhcCCCcccccc
Q 002894 19 SIPAGSRKIVQS-LKEIV-NCPESEIYAMLKECNMDPN---EAVNRLLSQDPFHEVKS 71 (869)
Q Consensus 19 ~ip~~~rk~V~~-ikEi~-~~seedi~~aL~ecn~D~n---~Av~rLl~q~~~~EVkk 71 (869)
..+.+.+.+|-. ||... |.+++||..+| -+++++ +|||+||.++-..-.|+
T Consensus 10 ~~~~~ie~~IL~l~~~~P~GItd~~L~~~~--p~~~~~~r~~aIN~LL~~gkiel~K~ 65 (81)
T 2dk8_A 10 ADPVEIENRIIELCHQFPHGITDQVIQNEM--PHIEAQQRAVAINRLLSMGQLDLLRS 65 (81)
T ss_dssp SCHHHHHHHHHHHHHHCSSCEEHHHHHHHC--TTSCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 345555655544 44444 99999999999 444554 57899999887764444
No 75
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=27.76 E-value=42 Score=34.47 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=38.0
Q ss_pred ccCCcchHHHHHhhhhcc-------CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 18 SSIPAGSRKIVQSLKEIV-------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~-------~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..++..-++.|+.||+.+ .++|.-++.-|+-|++|+++|..+|..
T Consensus 24 ~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 24 GNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356778888999998865 256889999999999999999998876
No 76
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=26.29 E-value=50 Score=35.61 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=36.2
Q ss_pred ccCCcchHHHHHhhhhcc--------CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 18 SSIPAGSRKIVQSLKEIV--------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~--------~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..++..-++.|++|||.+ .++|.-++.-|+-|++|+++|..+|..
T Consensus 6 ~~l~~~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 6 GDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp TBCCHHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 346777777788777754 356788999999999999999998876
No 77
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=24.27 E-value=61 Score=32.25 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=25.3
Q ss_pred Hhhhhcc---CCChHHHHHHHhhcCCCHHHHHHH
Q 002894 29 QSLKEIV---NCPESEIYAMLKECNMDPNEAVNR 59 (869)
Q Consensus 29 ~~ikEi~---~~seedi~~aL~ecn~D~n~Av~r 59 (869)
++++|+- ....+||+.+|.+-+||++.|+.-
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~e 137 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTE 137 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHH
Confidence 4455544 688999999999999999999863
No 78
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=22.12 E-value=19 Score=41.19 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=0.0
Q ss_pred hhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 31 LKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 31 ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
.+++.++..|..+.+|++|++|+.+|+.+|..
T Consensus 153 Ars~~g~n~EqAL~~L~~~~yDi~~AL~~L~~ 184 (482)
T 2xag_B 153 AKEKHGYNMEQALGMLFWHKHNIEKSLADLPN 184 (482)
T ss_dssp --------------------------------
T ss_pred HHHhcCccHHHHHHHHHHccCCHHHHHHHHhc
Confidence 34555777888999999999999999998864
No 79
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=21.01 E-value=71 Score=33.79 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=37.5
Q ss_pred ccCCcchHHHHHhhhhcc-------CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002894 18 SSIPAGSRKIVQSLKEIV-------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (869)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~-------~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (869)
..+...-++.|++|||.+ .++|+-++.-|+-|++|+++|+.+|..
T Consensus 33 ~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 33 GNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 447777888888888865 356888999999999999999998865
No 80
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=20.80 E-value=21 Score=38.12 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.3
Q ss_pred cchHHHH
Q 002894 22 AGSRKIV 28 (869)
Q Consensus 22 ~~~rk~V 28 (869)
.+.+|+|
T Consensus 100 tdt~Kq~ 106 (273)
T 3u5c_h 100 TDTKKKV 106 (273)
T ss_dssp CCCHHHH
T ss_pred Ccchhhh
Confidence 3455544
Done!