BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002896
(869 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 231/772 (29%), Positives = 345/772 (44%), Gaps = 104/772 (13%)
Query: 36 EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN--VN 93
E+H L+ +K L + + LLP W+ N +PC + G+ C +V SI+L++ +N
Sbjct: 12 REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSSKPLN 63
Query: 94 QIFGIIPPQI-----------------GNISKLKY------LDLSSNSFSG--TIPPQIG 128
F + + G++S K LDLS NS SG T +G
Sbjct: 64 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123
Query: 129 NLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVG-----GLSSL 181
+ S LKFL +S+N F G++ + L+ +E L L N +SG + VG G L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGCGEL 180
Query: 182 NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG 241
LA++ N + G + + NL L + +N+ S IP +G+ +L L + NKL G
Sbjct: 181 KHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 242 SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP--LSXXXXX 299
+ T L L + +N F IP LKSL L L EN+ G IP LS
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS----- 290
Query: 300 XXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 359
G +L+GL+L+ N ++P + G+ + L + L N+
Sbjct: 291 --------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 360 SGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSI-PREIG 416
SG +P + + ++ L LDLS N+ SG +P SL NL+ +L L L SN G I P
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 417 NLK-SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
N K +L EL L +N + I +L N + + L L N LSG IP LG+L KL L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 476 DNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 534
N L+G IP + LT I L +I LS+N G+I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXX 594
G+ NL +S N+ G++P E+GD L +DL+ N G IP+ +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 595 XNQLF------GQLPSELGSLIQLEYLDLSS---NRLSNSIPRSLGNLV----------- 634
+ + G G+ LE+ + S NRLS P ++ + V
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 635 --KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692
+ +L++S N IP ++ + +L L+L HN + IP ++ ++R L +L+LS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
L IP+ + L ID+S N L GPIP F N GLCG
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 136 bits (342), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 160/567 (28%), Positives = 259/567 (45%), Gaps = 51/567 (8%)
Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF--LGNLTNLDTLYLRNNSFSSS 266
+L N+ ++GS+ S SL+SL L N L G + LG+ + L L + +N+
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 267 IPSEI-GNLK--SLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSE-IGNL 322
P ++ G LK SL +L+L N ++G+ G + S+ G L
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGA-------------------NVVGWVLSDGCGEL 180
Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
K L+ ++ N++S + + NL + N+ S IP +G+ +L +LD+S NK
Sbjct: 181 KHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234
Query: 383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GN 441
LSG ++ T L +L + SN +G IP LKSL L L +NK + I L G
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXX--XXXXXXXXXXXX 499
+T L L N G +P G+ L L LS N G +P
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 500 XHLTCNISESF-GIHPKLTFIDLSHNNFYGQISSDWGKCP--NLGTFDVSVNNIIGSLPP 556
+ + ES + L +DLS NNF G I + + P L + N G +PP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 557 EIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLD 616
+ + S+L + LS N++ G IPS +G N L G++P EL + LE L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS 676
L N L+ IP L N L++++LS N+ EIP + +L +L+ L LS+N IP+
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 677 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 736
++ + RSL L+L+ N + IP + +G + + + + I N D + +
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKEC 587
Query: 737 QGNEGLCGDIKGFQSCKASKSHKPASR 763
G G++ FQ ++ + ++ ++R
Sbjct: 588 HG----AGNLLEFQGIRSEQLNRLSTR 610
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 231/772 (29%), Positives = 345/772 (44%), Gaps = 104/772 (13%)
Query: 36 EEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTN--VN 93
E+H L+ +K L + + LLP W+ N +PC + G+ C +V SI+L++ +N
Sbjct: 9 REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCRD-DKVTSIDLSSKPLN 60
Query: 94 QIFGIIPPQI-----------------GNISKLKY------LDLSSNSFSG--TIPPQIG 128
F + + G++S K LDLS NS SG T +G
Sbjct: 61 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 120
Query: 129 NLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVG-----GLSSL 181
+ S LKFL +S+N F G++ + L+ +E L L N +SG + VG G L
Sbjct: 121 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--NVVGWVLSDGCGEL 177
Query: 182 NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG 241
LA++ N + G + + NL L + +N+ S IP +G+ +L L + NKL G
Sbjct: 178 KHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 242 SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP--LSXXXXX 299
+ T L L + +N F IP LKSL L L EN+ G IP LS
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS----- 287
Query: 300 XXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSL 359
G +L+GL+L+ N ++P + G+ + L + L N+
Sbjct: 288 --------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 360 SGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSI-PREIG 416
SG +P + + ++ L LDLS N+ SG +P SL NL+ +L L L SN G I P
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 417 NLK-SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
N K +L EL L +N + I +L N + + L L N LSG IP LG+L KL L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 476 DNQLQGSIPXXXXXXXXXXXXXXXXH-LTCNISESFGIHPKLTFIDLSHNNFYGQISSDW 534
N L+G IP + LT I L +I LS+N G+I
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 535 GKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXX 594
G+ NL +S N+ G++P E+GD L +DL+ N G IP+ +
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 595 XNQLF------GQLPSELGSLIQLEYLDLSS---NRLSNSIPRSLGNLV----------- 634
+ + G G+ LE+ + S NRLS P ++ + V
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 635 --KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692
+ +L++S N IP ++ + +L L+L HN + IP ++ ++R L +L+LS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
L IP+ + L ID+S N L GPIP F N GLCG
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 160/567 (28%), Positives = 259/567 (45%), Gaps = 51/567 (8%)
Query: 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLF--LGNLTNLDTLYLRNNSFSSS 266
+L N+ ++GS+ S SL+SL L N L G + LG+ + L L + +N+
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 267 IPSEI-GNLK--SLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSE-IGNL 322
P ++ G LK SL +L+L N ++G+ G + S+ G L
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGA-------------------NVVGWVLSDGCGEL 177
Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
K L+ ++ N++S + + NL + N+ S IP +G+ +L +LD+S NK
Sbjct: 178 KHLA---ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 231
Query: 383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GN 441
LSG ++ T L +L + SN +G IP LKSL L L +NK + I L G
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXX--XXXXXXXXXXXX 499
+T L L N G +P G+ L L LS N G +P
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 500 XHLTCNISESF-GIHPKLTFIDLSHNNFYGQISSDWGKCPN--LGTFDVSVNNIIGSLPP 556
+ + ES + L +DLS NNF G I + + P L + N G +PP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 557 EIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLD 616
+ + S+L + LS N++ G IPS +G N L G++P EL + LE L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS 676
L N L+ IP L N L++++LS N+ EIP + +L +L+ L LS+N IP+
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 677 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEAL 736
++ + RSL L+L+ N + IP + +G + + + + I N D + +
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKEC 584
Query: 737 QGNEGLCGDIKGFQSCKASKSHKPASR 763
G G++ FQ ++ + ++ ++R
Sbjct: 585 HG----AGNLLEFQGIRSEQLNRLSTR 607
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 127/288 (44%), Gaps = 39/288 (13%)
Query: 36 EEVHALLKWKTSLQNHDK-GSLLPSWTLNNATKISPCAWFGIHCN---HVGRVNSINLTN 91
++ ALL+ K L N S LP+ N T W G+ C+ RVN+++L+
Sbjct: 6 QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRT------WLGVLCDTDTQTYRVNNLDLSG 59
Query: 92 --------------------------VNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP 125
+N + G IPP I +++L YL ++ + SG IP
Sbjct: 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 126 QIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSL-NEL 184
+ + L L S N SG +PP I L + + N++SG IP G S L +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP 244
++ N L G IPP+ NL NLA + L N L G G+ K+ + L N L +
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
+G NL+ L LRNN ++P + LK L L + N L G IP
Sbjct: 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 115/269 (42%), Gaps = 55/269 (20%)
Query: 315 IPSEIGNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
IPS + NL L+ L + N L IP + LT L Y+ ++SG+IP + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
LD S N LSG++P S+ +L NL + N + G+IP G+ LF
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF----------- 176
Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXX 493
T + + N L+G IP NL L + LS N L+G
Sbjct: 177 ------------TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG------------ 211
Query: 494 XXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC---PNLGTFDVSVNNI 550
+ S FG I L+ N ++ D GK NL D+ N I
Sbjct: 212 -----------DASVLFGSDKNTQKIHLAKN----SLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 551 IGSLPPEIGDSSQLHVIDLSANHIIGKIP 579
G+LP + LH +++S N++ G+IP
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSEL 606
+NN++G +PP I +QLH + ++ ++ G IP + N L G LP +
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY-LNLSTNQFIQEIPIKLEKLIHLSELDL 665
SL L + NR+S +IP S G+ KL + +S N+ +IP L +L+ +DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 666 SHNFL--------GKEIPSQICNM---------------RSLEMLNLSHNNLSDFIPRCF 702
S N L G + +Q ++ ++L L+L +N + +P+
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 703 EEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744
++ L +++S+N L G IP + A N+ LCG
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 123/298 (41%), Gaps = 58/298 (19%)
Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS---------IPS 269
I ++GN +LSS L C +LG L + DT R N+ S IPS
Sbjct: 14 IKKDLGNPTTLSSW-LPTTDCCNRT--WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70
Query: 270 EIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLE 329
+ NL L+ L +G +N + G IP I L L L
Sbjct: 71 SLANLPYLNFLYIGG--INNLV---------------------GPIPPAIAKLTQLHYLY 107
Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
+ +S +IP +L + L N+LSG++P I +L +L + N++SG+IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 390 SLGNLTNLAI-LYLHSNTLLGSIPREIGNLKSLF------------ELQLGDNK------ 430
S G+ + L + + N L G IP NL F + G +K
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 431 -LSNSISHSLGNL---THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
NS++ LG + ++ L L +N + G +P+ L L L L +S N L G IP
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 158/339 (46%), Gaps = 62/339 (18%)
Query: 76 IHCNHVGRVNSI-NLTNV-------NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
++ N + + + NLTN+ NQI I P + N++ L L+LSSN+ S +
Sbjct: 92 MNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SAL 147
Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187
L+ L+ L S+NQ + P + +L+ +E L + N++S + L++L L T
Sbjct: 148 SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 203
Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA---LGNNKLCGSIP 244
+N + P LG LTNL L L+ N L +IG L SL++L L NN++ P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP 256
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
L LT L L L N S+ P + L +L+ LEL EN+L P+S
Sbjct: 257 L--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS---------- 302
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
NLK+L+ L L N +S P + +LT L + Y N +S
Sbjct: 303 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 342
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
S + NL +++ L N++S P L NLT + L L+
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 379
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 153/357 (42%), Gaps = 74/357 (20%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
L +T L A L S+ G + L +L+ ++ S N+L+ P L NLT L + +
Sbjct: 40 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
++N + P + NL +L L L +N++++ L NLT++ L L N +S +
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 463 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 522
L L L L+ S NQ+ P +LT L +D+S
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582
N IS K NL + ++ NN I + P +G + L + L+ N + +I
Sbjct: 182 SNKV-SDISV-LAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 583 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
G L SL L LDL++N++SN P L L KL L L
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
NQ P L L L+ L+L+ N L E S I N+++L L L NN+SD P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 154/380 (40%), Gaps = 77/380 (20%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L+ + ++N+L+ P L NLT L + N ++ P + NL +L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L NLTNL L L SNT+ S + L SL +L N++++ L N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDL--KPLAN 171
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH 501
LT + L + N +S + L L L L ++NQ+ P
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----------------- 212
Query: 502 LTCNISESFGIHPKLTFIDLSHNNF--YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
GI L + L+ N G ++S NL D++ NN I +L P G
Sbjct: 213 --------LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG 259
Query: 560 DSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSS 619
++L + L AN I P L L L L+L+
Sbjct: 260 -LTKLTELKLGANQISNISP--------------------------LAGLTALTNLELNE 292
Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
N+L + P + NL L YL L N P+ L L L +N + S +
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLA 346
Query: 680 NMRSLEMLNLSHNNLSDFIP 699
N+ ++ L+ HN +SD P
Sbjct: 347 NLTNINWLSAGHNQISDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 158/339 (46%), Gaps = 62/339 (18%)
Query: 76 IHCNHVGRVNSI-NLTNV-------NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
++ N + + + NLTN+ NQI I P + N++ L L+LSSN+ S +
Sbjct: 92 MNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SAL 147
Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187
L+ L+ L S+NQ + P + +L+ +E L + N++S + L++L L T
Sbjct: 148 SGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 203
Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA---LGNNKLCGSIP 244
+N + P LG LTNL L L+ N L +IG L SL++L L NN++ P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP 256
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
L LT L L L N S+ P + L +L+ LEL EN+L P+S
Sbjct: 257 L--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS---------- 302
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
NLK+L+ L L N +S P + +LT L + Y N +S
Sbjct: 303 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 342
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
S + NL +++ L N++S P L NLT + L L+
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 379
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
L +T L A L S+ G + L +L+ ++ S N+L+ P L NLT L + +
Sbjct: 40 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
++N + P + NL +L L L +N++++ L NLT++ L L N +S +
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 463 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 522
L L L L S NQ+ P +LT L +D+S
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582
N IS K NL + ++ NN I + P +G + L + L+ N + +I
Sbjct: 182 SNKV-SDISV-LAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 583 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
G L SL L LDL++N++SN P L L KL L L
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
NQ P L L L+ L+L+ N L E S I N+++L L L NN+SD P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 154/380 (40%), Gaps = 77/380 (20%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L+ + ++N+L+ P L NLT L + N ++ P + NL +L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L NLTNL L L SNT+ S + L SL +L N++++ L N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDL--KPLAN 171
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH 501
LT + L + N +S + L L L L ++NQ+ P
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----------------- 212
Query: 502 LTCNISESFGIHPKLTFIDLSHNNF--YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
GI L + L+ N G ++S NL D++ NN I +L P G
Sbjct: 213 --------LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG 259
Query: 560 DSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSS 619
++L + L AN I P L L L L+L+
Sbjct: 260 -LTKLTELKLGANQISNISP--------------------------LAGLTALTNLELNE 292
Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
N+L + P + NL L YL L N P+ L L L +N + S +
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLA 346
Query: 680 NMRSLEMLNLSHNNLSDFIP 699
N+ ++ L+ HN +SD P
Sbjct: 347 NLTNINWLSAGHNQISDLTP 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 157/339 (46%), Gaps = 62/339 (18%)
Query: 76 IHCNHVGRVNSI-NLTNV-------NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
++ N + + + NLTN+ NQI I P + N++ L L+LSSN+ S +
Sbjct: 92 MNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SAL 147
Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187
L+ L+ L S+NQ + P + +L+ +E L + N++S + L++L L T
Sbjct: 148 SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 203
Query: 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLA---LGNNKLCGSIP 244
+N + P LG LTNL L L+ N L +IG L SL++L L NN++ P
Sbjct: 204 NNQISDITP--LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP 256
Query: 245 LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
L LT L L L N S+ P + L +L+ LEL EN+L P+S
Sbjct: 257 L--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS---------- 302
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
NLK+L+ L L N +S P + +LT L + N +S
Sbjct: 303 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-- 342
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
S + NL +++ L N++S P L NLT + L L+
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 379
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402
L +T L A L S+ G + L +L+ ++ S N+L+ P L NLT L + +
Sbjct: 40 LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 92
Query: 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEE 462
++N + P + NL +L L L +N++++ L NLT++ L L N +S +
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA 146
Query: 463 LGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLS 522
L L L L+ S NQ+ P +LT L +D+S
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLA--------------NLTT-----------LERLDIS 181
Query: 523 HNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582
N S K NL + ++ NN I + P +G + L + L+ N + +I
Sbjct: 182 SNKVSD--ISVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGNQL-----KDI 232
Query: 583 GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLS 642
G L SL L LDL++N++SN P L L KL L L
Sbjct: 233 GT---------------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 643 TNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
NQ P L L L+ L+L+ N L E S I N+++L L L NN+SD P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 155/380 (40%), Gaps = 77/380 (20%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L+ + ++N+L+ P L NLT L + N ++ P + NL +L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L NLTNL L L SNT+ S + L SL +L N++++ L N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDL--KPLAN 171
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH 501
LT + L + N +S + L L L L ++NQ+ P
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----------------- 212
Query: 502 LTCNISESFGIHPKLTFIDLSHNNF--YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
GI L + L+ N G ++S NL D++ NN I +L P G
Sbjct: 213 --------LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG 259
Query: 560 DSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSS 619
++L + L AN I P L L L L+L+
Sbjct: 260 -LTKLTELKLGANQISNISP--------------------------LAGLTALTNLELNE 292
Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
N+L + P + NL L YL L N P+ L L L S+N + S +
Sbjct: 293 NQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDV--SSLA 346
Query: 680 NMRSLEMLNLSHNNLSDFIP 699
N+ ++ L+ HN +SD P
Sbjct: 347 NLTNINWLSAGHNQISDLTP 366
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 149/339 (43%), Gaps = 75/339 (22%)
Query: 89 LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
L N NQI I P + N++ L L L +N + P + NL+ L L LS+N S
Sbjct: 91 LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 142
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
I LS + +L F NQ++ P + L++L L ++SN K S L LTNL
Sbjct: 143 -DISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 197
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
L NN +S P +G L +L L+L N+L G+ L +LTNL L L NN S
Sbjct: 198 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 251
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
+ P S + L +L+ LEL EN+L P+S
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 301
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
NLK+L+ L L N +S P + +LT L + Y N +S
Sbjct: 302 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 341
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
S + NL +++ L N++S P L NLT + L L+
Sbjct: 342 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 378
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 56/311 (18%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
L NL + +N L P + NL L ++ + +N++++ L NLT++T L L++N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIH 513
++ + P L NL L L LS N + +IS G+
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI------------------------SDISALSGLT 151
Query: 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTF---DVSVNNIIGSLPPEIGDSSQLHVID-- 568
L NF Q++ D NL T D+S N + +I ++L ++
Sbjct: 152 S------LQQLNFGNQVT-DLKPLANLTTLERLDISSNKV-----SDISVLAKLTNLESL 199
Query: 569 LSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628
++ N+ I I + +G NQL + L SL L LDL++N++SN P
Sbjct: 200 IATNNQISDI-TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP- 255
Query: 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 688
L L KL L L NQ P L L L+ L+L+ N L E S I N+++L L
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLT 310
Query: 689 LSHNNLSDFIP 699
L NN+SD P
Sbjct: 311 LYFNNISDISP 321
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 155/380 (40%), Gaps = 78/380 (20%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L+ + ++N+L+ P L NLT L + N ++ P + NL +L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L NLTNL L L SNT+ S + L SL +L G N++++ L N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFG-NQVTDL--KPLAN 170
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH 501
LT + L + N +S + L L L L ++NQ+ P
Sbjct: 171 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----------------- 211
Query: 502 LTCNISESFGIHPKLTFIDLSHNNF--YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
GI L + L+ N G ++S NL D++ NN I +L P G
Sbjct: 212 --------LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG 258
Query: 560 DSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSS 619
++L + L AN I P L L L L+L+
Sbjct: 259 -LTKLTELKLGANQISNISP--------------------------LAGLTALTNLELNE 291
Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
N+L + P + NL L YL L N P+ L L L +N + S +
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLA 345
Query: 680 NMRSLEMLNLSHNNLSDFIP 699
N+ ++ L+ HN +SD P
Sbjct: 346 NLTNINWLSAGHNQISDLTP 365
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 149/339 (43%), Gaps = 75/339 (22%)
Query: 89 LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
L N NQI I P + N++ L L L +N + P + NL+ L L LS+N S
Sbjct: 96 LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 147
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
I LS + +L F NQ++ P + L++L L ++SN K S L LTNL
Sbjct: 148 -DISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 202
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
L NN +S P +G L +L L+L N+L G+ L +LTNL L L NN S
Sbjct: 203 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 256
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
+ P S + L +L+ LEL EN+L P+S
Sbjct: 257 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 306
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
NLK+L+ L L N +S P + +LT L + Y N +S
Sbjct: 307 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
S + NL +++ L N++S P L NLT + L L+
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 62/314 (19%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
L NL + +N L P + NL L ++ + +N++++ L NLT++T L L++N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 122
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFG-- 511
++ + P L NL L L LS N + LT SFG
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLSFGNQ 166
Query: 512 ---IHPKLTFIDLSHNNFYGQISSD---WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH 565
+ P L + SD K NL + ++ NN I + P +G + L
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITP-LGILTNLD 224
Query: 566 VIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 625
+ L+ N + +IG L SL L LDL++N++SN
Sbjct: 225 ELSLNGNQL-----KDIGT---------------------LASLTNLTDLDLANNQISNL 258
Query: 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 685
P L L KL L L NQ P L L L+ L+L+ N L E S I N+++L
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLT 312
Query: 686 MLNLSHNNLSDFIP 699
L L NN+SD P
Sbjct: 313 YLTLYFNNISDISP 326
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 157/380 (41%), Gaps = 78/380 (20%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L+ + ++N+L+ P L NLT L + N ++ P + NL +L+ L L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L NLTNL L L SNT+ S + L SL +L G N++++ L N
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFG-NQVTDL--KPLAN 175
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH 501
LT + L + N +S + L L L L ++NQ+ P
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----------------- 216
Query: 502 LTCNISESFGIHPKLTFIDLSHNNF--YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
GI L + L+ N G ++S NL D++ NN I +L P G
Sbjct: 217 --------LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG 263
Query: 560 DSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSS 619
++L + L AN I S I S L L L L+L+
Sbjct: 264 -LTKLTELKLGANQI-----SNI---------------------SPLAGLTALTNLELNE 296
Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
N+L + P + NL L YL L N P+ L L L +N + S +
Sbjct: 297 NQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDV--SSLA 350
Query: 680 NMRSLEMLNLSHNNLSDFIP 699
N+ ++ L+ HN +SD P
Sbjct: 351 NLTNINWLSAGHNQISDLTP 370
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKS 372
+IPS I L+L N+LSS LT L YL N L ++P+ I LK+
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432
L L +++NKL L NLA L L N L PR +L L L LG N+L
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480
+ LT + L LY+N L V L +L L L +NQL+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Query: 71 CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 130
C G C+ NS++ ++ + IP I + K LDL SN S L
Sbjct: 5 CKKDGGVCSCNNNKNSVDCSS--KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRL 60
Query: 131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 190
+ L+ LYL+ N+ L +E L + N+L L +L EL L N
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 191 LKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGN 249
LK P +LT L L L N L S+P + L SL L L NN+L
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Query: 250 LTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
LT L TL L NN +L+ L +L+L EN
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLG 671
+ LDL SN+LS+ ++ L KL L L+ N+ +Q +P + ++L +L L ++ N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKL- 97
Query: 672 KEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
+ +P + + + +L L L N L PR F+ + L Y+ + YNEL
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 314 SIPSEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
++P+ I LK+L L + DN+L + L NLA L +N L S+P
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLP-------- 125
Query: 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKL 431
P +LT L L L N L S+P+ + L SL EL+L +N+L
Sbjct: 126 ---------------PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 432 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
+ LT + L L +N L V +L KL ML L +N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL 654
NQL P SL +L YL L N L S+P+ + L L L L NQ +
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692
+KL L L L +N L + ++ L+ML L N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 26/123 (21%)
Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSL 421
+IPS I LDL NKLS + LT L +LYL
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL------------------- 68
Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481
DNKL + L ++ L + DN L + LV L L L NQL+
Sbjct: 69 -----NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 482 SIP 484
P
Sbjct: 124 LPP 126
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 322 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
L L L+L+DN +L S P L L +L + L P L +L L L +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
N L + +L NL L+LH N + R L SL L L N++++ H+
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
+L + L L+ N LS + E L L L L L+DN
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 1/178 (0%)
Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGH-LSYIEALHLFKNQL 167
L L L SN + L++L+ L LS N + P H L + LHL + L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 227
P GL++L L L N L+ + +L NL L+LH N +S L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
SL L L N++ P +L L TLYL N+ S+ + L++L L L +N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 87/228 (38%), Gaps = 51/228 (22%)
Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI-PLFLGNLTNLDTLYLRNNS 262
NL IL+LH+N L+ + L L L L +N S+ P L L TL+L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL---- 112
Query: 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNL 322
+ ELG G L
Sbjct: 113 ------------DRCGLQELGPGLFRG--------------------------------L 128
Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
+L L L DN L + +L NL +L+ N +S L SL L L +N+
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE-IGNLKSLFELQLGDN 429
++ PH+ +L L LYL +N L ++P E + L++L L+L DN
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 76 IHCNHVGRVNS-----------INLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIP 124
+H N + R+++ ++L++ Q+ + P + +L L L P
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122
Query: 125 PQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL 184
L+ L++LYL N L + L L N++S GL SL+ L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Query: 185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKL---C 240
L N + P + +L L LYL N+LS ++P+E + L++L L L +N C
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC 241
Query: 241 GSIPLF 246
+ PL+
Sbjct: 242 RARPLW 247
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 62/158 (39%), Gaps = 1/158 (0%)
Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN-QLSGPIPHEVGGLSSLNELALTSNFL 191
L L+L +N + L+ +E L L N QL P GL L+ L L L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 192 KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 251
+ P L L LYL +N+L +L +L+ L L N++ L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG 289
+LD L L N + P +L L L L N L+
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 378 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS- 436
L N++S S NL IL+LHSN L L L +L L DN S+
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 437 ---HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481
H LG L L L L + P L L L L DN LQ
Sbjct: 99 ATFHGLGRL---HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 322 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
L L L+L+DN +L S P L L +L + L P L +L L L +
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
N L + +L NL L+LH N + R L SL L L N++++ H+
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
+L + L L+ N LS + E L L L L L+DN
Sbjct: 198 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 1/178 (0%)
Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGH-LSYIEALHLFKNQL 167
L L L SN + L++L+ L LS N + P H L + LHL + L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 227
P GL++L L L N L+ + +L NL L+LH N +S L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Query: 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
SL L L N++ P +L L TLYL N+ S+ + L++L L L +N
Sbjct: 177 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 87/228 (38%), Gaps = 51/228 (22%)
Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI-PLFLGNLTNLDTLYLRNNS 262
NL IL+LH+N L+ + L L L L +N S+ P L L TL+L
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL---- 111
Query: 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNL 322
+ ELG G L
Sbjct: 112 ------------DRCGLQELGPGLFRG--------------------------------L 127
Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK 382
+L L L DN L + +L NL +L+ N +S L SL L L +N+
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 187
Query: 383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE-IGNLKSLFELQLGDN 429
++ PH+ +L L LYL +N L ++P E + L++L L+L DN
Sbjct: 188 VAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 234
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 76 IHCNHVGRVNS-----------INLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIP 124
+H N + R+++ ++L++ Q+ + P + +L L L P
Sbjct: 62 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 121
Query: 125 PQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL 184
L+ L++LYL N L + L L N++S GL SL+ L
Sbjct: 122 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 181
Query: 185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKL---C 240
L N + P + +L L LYL N+LS ++P+E + L++L L L +N C
Sbjct: 182 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC 240
Query: 241 GSIPLF 246
+ PL+
Sbjct: 241 RARPLW 246
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 62/158 (39%), Gaps = 1/158 (0%)
Query: 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN-QLSGPIPHEVGGLSSLNELALTSNFL 191
L L+L +N + L+ +E L L N QL P GL L+ L L L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 192 KGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 251
+ P L L LYL +N+L +L +L+ L L N++ L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG 289
+LD L L N + P +L L L L N L+
Sbjct: 177 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 378 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS- 436
L N++S S NL IL+LHSN L L L +L L DN S+
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 437 ---HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481
H LG L L L L + P L L L L DN LQ
Sbjct: 98 ATFHGLGRL---HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 142
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L GLEL DN+++ P L NLT + L N L S I L+S+ LDL+
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L L+NL +LYL N + P + L +L L +G+N++++ L N
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVND--LTPLAN 177
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
L+ +T L DN +S + P L +L L + L DNQ+ P
Sbjct: 178 LSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 39/178 (21%)
Query: 199 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 258
L NLT + L L N L S I L+S+ +L L + ++ PL L+NL LYL
Sbjct: 87 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYL 142
Query: 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSE 318
N ++ P + L +L L +G N++N PL+
Sbjct: 143 DLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPLA------------------------ 176
Query: 319 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
NL L+ L DN++S P L +L NL +L N +S P L +LSNL
Sbjct: 177 --NLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP-----LANLSNL 225
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 663
S + L ++ LDL+S ++++ P L L L L L NQ P L L +L L
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 162
Query: 664 DLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
+ +N + P + N+ L L N +SD P
Sbjct: 163 SIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP 196
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 148/339 (43%), Gaps = 75/339 (22%)
Query: 89 LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
L N NQI I P + N++ L L L +N + P + NL+ L L LS+N S
Sbjct: 95 LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 146
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
I LS + +L F NQ++ P + L++L L ++SN K S L LTNL
Sbjct: 147 -DISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 201
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
L NN +S P +G L +L L+L N+L G+ L +LTNL L L NN S
Sbjct: 202 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 255
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
+ P S + L +L+ LEL EN+L P+S
Sbjct: 256 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 305
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
NLK+L+ L L N +S P + +LT L + N +S
Sbjct: 306 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-- 345
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
S + NL +++ L N++S P L NLT + L L+
Sbjct: 346 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 382
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 62/314 (19%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
L NL + +N L P + NL L ++ + +N++++ L NLT++T L L++N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 121
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFG-- 511
++ + P L NL L L LS N + LT SFG
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLSFGNQ 165
Query: 512 ---IHPKLTFIDLSHNNFYGQISSD---WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH 565
+ P L + SD K NL + ++ NN I + P +G + L
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITP-LGILTNLD 223
Query: 566 VIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 625
+ L+ N + +IG L SL L LDL++N++SN
Sbjct: 224 ELSLNGNQL-----KDIGT---------------------LASLTNLTDLDLANNQISNL 257
Query: 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLE 685
P L L KL L L NQ P L L L+ L+L+ N L E S I N+++L
Sbjct: 258 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLT 311
Query: 686 MLNLSHNNLSDFIP 699
L L NN+SD P
Sbjct: 312 YLTLYFNNISDISP 325
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 158/380 (41%), Gaps = 78/380 (20%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L+ + ++N+L+ P L NLT L + N ++ P + NL +L+ L L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L NLTNL L L SNT+ S + L SL +L G N++++ L N
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFG-NQVTDL--KPLAN 174
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH 501
LT + L + N +S + L L L L ++NQ+ P
Sbjct: 175 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----------------- 215
Query: 502 LTCNISESFGIHPKLTFIDLSHNNF--YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
GI L + L+ N G ++S NL D++ NN I +L P G
Sbjct: 216 --------LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG 262
Query: 560 DSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSS 619
++L + L AN I S I S L L L L+L+
Sbjct: 263 -LTKLTELKLGANQI-----SNI---------------------SPLAGLTALTNLELNE 295
Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
N+L + P + NL L YL L N P+ L L L ++N + S +
Sbjct: 296 NQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSDV--SSLA 349
Query: 680 NMRSLEMLNLSHNNLSDFIP 699
N+ ++ L+ HN +SD P
Sbjct: 350 NLTNINWLSAGHNQISDLTP 369
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 148/339 (43%), Gaps = 75/339 (22%)
Query: 89 LTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148
L N NQI I P + N++ L L L +N + P + NL+ L L LS+N S
Sbjct: 91 LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---- 142
Query: 149 PQIGHLSYIEALHL--FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206
I LS + +L F NQ++ P + L++L L ++SN K S L LTNL
Sbjct: 143 -DISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLE 197
Query: 207 ILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL--CGSIPLFLGNLTNLDTLYLRNNSFS 264
L NN +S P +G L +L L+L N+L G+ L +LTNL L L NN S
Sbjct: 198 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 251
Query: 265 SSIP--------------------SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXX 304
+ P S + L +L+ LEL EN+L P+S
Sbjct: 252 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------- 301
Query: 305 XXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIP 364
NLK+L+ L L N +S P + +LT L + N +S
Sbjct: 302 ----------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-- 341
Query: 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
S + NL +++ L N++S P L NLT + L L+
Sbjct: 342 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 378
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 56/311 (18%)
Query: 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
L NL + +N L P + NL L ++ + +N++++ L NLT++T L L++N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNN 117
Query: 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIH 513
++ + P L NL L L LS N + +IS G+
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI------------------------SDISALSGLT 151
Query: 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTF---DVSVNNIIGSLPPEIGDSSQLHVID-- 568
L NF Q++ D NL T D+S N + +I ++L ++
Sbjct: 152 S------LQQLNFGNQVT-DLKPLANLTTLERLDISSNKV-----SDISVLAKLTNLESL 199
Query: 569 LSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628
++ N+ I I + +G NQL + L SL L LDL++N++SN P
Sbjct: 200 IATNNQISDI-TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP- 255
Query: 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 688
L L KL L L NQ P L L L+ L+L+ N L E S I N+++L L
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLT 310
Query: 689 LSHNNLSDFIP 699
L NN+SD P
Sbjct: 311 LYFNNISDISP 321
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 156/380 (41%), Gaps = 78/380 (20%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L+ + ++N+L+ P L NLT L + N ++ P + NL +L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L NLTNL L L SNT+ S + L SL +L G N++++ L N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFG-NQVTDL--KPLAN 170
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXH 501
LT + L + N +S + L L L L ++NQ+ P
Sbjct: 171 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----------------- 211
Query: 502 LTCNISESFGIHPKLTFIDLSHNNF--YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG 559
GI L + L+ N G ++S NL D++ NN I +L P G
Sbjct: 212 --------LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLA-NNQISNLAPLSG 258
Query: 560 DSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSS 619
++L + L AN I P L L L L+L+
Sbjct: 259 -LTKLTELKLGANQISNISP--------------------------LAGLTALTNLELNE 291
Query: 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679
N+L + P + NL L YL L N P+ L L L S+N + S +
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVSDV--SSLA 345
Query: 680 NMRSLEMLNLSHNNLSDFIP 699
N+ ++ L+ HN +SD P
Sbjct: 346 NLTNINWLSAGHNQISDLTP 365
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 3/179 (1%)
Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN-QFSGRIPPQIGHLSYIEALHLFKNQL 167
L L L SN+ +G L++L+ L LS N Q P L ++ LHL + L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 227
P GL++L L L N L+ + +L NL L+LH N + L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEI-GNLKSLSILELGEN 285
SL L L N + P +L L TLYL N+ S +P+E+ L+SL L L +N
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDN 234
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS----F 263
++LH N +S + + ++L+ L L +N L G LT L+ L L +N+
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLK 323
+ +G+L +L + G L P L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELG---------------------------PGLFRGLA 128
Query: 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
+L L L DN L + + +L NL +L+ N + L SL L L +N +
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Query: 384 SGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 429
+ PH+ +L L LYL +N L +P E+ L+SL L+L DN
Sbjct: 189 ARVHPHAFRDLGRLMTLYLFANN-LSMLPAEVLVPLRSLQYLRLNDN 234
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 322 LKSLSGLELADN-ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
L L L+L+DN +L P L +L +L + L P L +L L L +
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
N L ++ +L NL L+LH N + L SL L L N ++ H+
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 441 NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
+L + L L+ N LS + E L L L L L+DN
Sbjct: 198 DLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 5/167 (2%)
Query: 84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 143
+ ++L++ Q+ + P + L L L P L+ L++LYL N
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 144 SGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLT 203
L + L L N++ H GL SL+ L L N + P + +L
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 204 NLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKL---CGSIPLF 246
L LYL N+LS +P+E+ L+SL L L +N C + PL+
Sbjct: 201 RLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLW 246
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 53/211 (25%)
Query: 198 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL------------------ 239
S + NL IL+LH+N+L+G + L L L L +N
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 240 ----CGSIPLFLG---NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
CG L G L L LYL++N+ + + +L +L+ L L NR IP
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR----IP 165
Query: 293 LSXXXXXXXXXXXXXXXXXXGSIPSE-IGNLKSLSGLELADNELSSSIPHYLGNLTNLAA 351
S+P L SL L L N ++ PH +L L
Sbjct: 166 ---------------------SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMT 204
Query: 352 FYLYKNSLSGSIPSEI-GNLKSLSNLDLSEN 381
YL+ N+LS +P+E+ L+SL L L++N
Sbjct: 205 LYLFANNLS-MLPAEVLVPLRSLQYLRLNDN 234
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 54/138 (39%)
Query: 316 PSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 375
P+ L L L L L P L L YL N+L + +L +L++
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 376 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI 435
L L N++ H+ L +L L LH N + P +L L L L N LS
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 436 SHSLGNLTHMTLLALYDN 453
+ L L + L L DN
Sbjct: 217 AEVLVPLRSLQYLRLNDN 234
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 378 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN-KLSNSIS 436
L N++S S + NL IL+LHSN L G L L +L L DN +L
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 437 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481
+ L H+ L L L + P L L L L DN LQ
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEI-PIKLEKLIHLSELDLSHNFL 670
L L L SN L+ + L L L+LS N ++ + P L HL L L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 671 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
+ P + +L+ L L NNL F ++ L ++ + N +
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSEN 381
L +L GLEL DN+++ P L NLT + L N L S I L+S+ LDL+
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
+++ P L L+NL +LYL N + P + L +L L +G+ ++S+ L N
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLAN 171
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
L+ +T L DN +S + P L +L L + L +NQ+ P
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 195
L L NQ + P + +L+ I L L N L + GL S+ L LTS +
Sbjct: 68 LELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 123
Query: 196 PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDT 255
P L L+NL +LYL N ++ P + L +L L++GN ++ P L NL+ L T
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177
Query: 256 LYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS 294
L +N S P + +L +L + L N+++ PL+
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA 214
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 663
S + L ++ LDL+S ++++ P L L L L L NQ P L L +L L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156
Query: 664 DLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699
+ + + P + N+ L L N +SD P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 136/350 (38%), Gaps = 64/350 (18%)
Query: 390 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS--LGNLTHMTL 447
+ NL NL IL L S+ + P L LFEL+L LS+++ NL +T
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 448 LALYDNALSGV-IPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNI 506
L L N + + + G L L + S NQ+ L C
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI---------------------FLVCEH 166
Query: 507 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN------LGTFDVSVN----NIIGSLPP 556
L+F L+ N+ Y ++S DWGKC N L DVS N +I G+
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Query: 557 EIGDSSQLHVIDLSANHIIG--------KIPSEIGXXXXXXXXXXXXNQLFGQLPSELGS 608
I S +I A+HI+G K P + N G S +
Sbjct: 227 AISKSQAFSLI--LAHHIMGAGFGFHNIKDPDQ--------------NTFAGLARSSV-- 268
Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
+LDLS + + R L L LNL+ N+ + L +L L+LS+N
Sbjct: 269 ----RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
LG+ S + + ++L N+++ + F+ + L +D+ N L
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 148/368 (40%), Gaps = 50/368 (13%)
Query: 321 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE--IGNLKSLSNLDL 378
NL +L L+L +++ P L +L LY LS ++ + NLK+L+ LDL
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 379 SENKLSGSIPH-SLGNLTNLAILYLHSNTLLGSIPREIGNL--KSLFELQLGDNKLSNSI 435
S+N++ H S G L +L + SN + E+ L K+L L N L + +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 436 SHSLG---NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXX 492
S G N +L + D + +G + GN +S +Q I
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN----AISKSQAFSLI--------- 237
Query: 493 XXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG 552
H+ + FG H D N F G S ++ D+S + +
Sbjct: 238 -----LAHHI---MGAGFGFH---NIKDPDQNTFAGLARS------SVRHLDLS-HGFVF 279
Query: 553 SLPPEIGDS-SQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQL-PSELGSLI 610
SL + ++ L V++L+ N I KI E L G+L S L
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338
Query: 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN-----QFIQEIP---IKLEKLIHLSE 662
++ Y+DL N ++ ++ L KL L+L N FI IP + KL+ L +
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398
Query: 663 LDLSHNFL 670
++L+ N +
Sbjct: 399 INLTANLI 406
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL-DLSE 380
L+ L L+L DN L++ H++ ++ ++ LSG+ + + +NL LSE
Sbjct: 361 LEKLQTLDLRDNALTT--IHFIPSIPDIF--------LSGNKLVTLPKINLTANLIHLSE 410
Query: 381 NKLSG-SIPHSLGNLTNLAILYLHSNTLLGS----IPREIGNLKSLFELQLGDNKLSNSI 435
N+L I + L + +L IL L+ N P E +L+ LF LG+N L +
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF---LGENMLQLAW 467
Query: 436 SHSLG-----NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
L L+H+ +L L N L+ + P +L L L+L+ N+L
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFS--GRIPPQIGHLSYIEALH 161
IS +LD S+N + T+ G+L+ L+ L L NQ +I + ++ L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 162 LFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSI----PPSLGNLTNLAILYLHNNSLS 216
+ +N +S + SL L ++SN L +I PP + +L LH+N +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDLHSNKIK 434
Query: 217 GSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIP 268
SIP ++ L++L L + +N+L S+P LT+L ++L N + S P
Sbjct: 435 -SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 232 LALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS--SSIPSEIGNLKSLSILELGENRLNG 289
L NN L ++ G+LT L+TL L+ N S I +KSL L++ +N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 290 SIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 349
+ KSL L ++ N L+ +I L +
Sbjct: 388 ----------------------YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423
Query: 350 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLL 408
L+ N + SIP ++ L++L L+++ N+L S+P + LT+L ++LH+N
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481
Query: 409 GSIPR 413
S PR
Sbjct: 482 CSCPR 486
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLS--GSIPSEIGNLKSLSNLDLSENKLS- 384
L+ ++N L+ ++ G+LT L L N L I +KSL LD+S+N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 385 ------GSIPHSLGNLT----------------NLAILYLHSNTLLGSIPREIGNLKSLF 422
S SL +L + +L LHSN + SIP+++ L++L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQ 447
Query: 423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 461
EL + N+L + LT + + L+ N P
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 23/229 (10%)
Query: 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQL 598
N+ F VS ++ L P S LH +D S N + + G NQL
Sbjct: 303 NIKNFTVSGTRMVHMLCPS-KISPFLH-LDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 599 -----FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK-LHYLNLSTNQFIQEIPI 652
++ +++ SL QL D+S N +S + + K L LN+S+N I
Sbjct: 361 KELSKIAEMTTQMKSLQQL---DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417
Query: 653 KLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYID 712
L I + LDL N + K IP Q+ + +L+ LN++ N L F+ + L I
Sbjct: 418 CLPPRIKV--LDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 713 ISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPA 761
+ N P S L + Q +G S K S S KP
Sbjct: 475 LHTNPWDCSCPRIDYLSRWLNKNSQKEQG---------SAKCSGSGKPV 514
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 109 LKYLDLSSNSFSGT-IPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEAL 160
LK+LDLS N+F I + GN+S LKFL LS I HL+ + L
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 27/135 (20%)
Query: 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL--LGSIPREIGNLKSLFELQLGDNKLS 432
+LD S N L+ ++ + G+LT L L L N L L I +KSL +L + N +S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 433 -------NSISHSLGNLT----------------HMTLLALYDNALSGVIPEELGNLVKL 469
S + SL +L + +L L+ N + IP+++ L L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEAL 446
Query: 470 TMLTLSDNQLQGSIP 484
L ++ NQL+ S+P
Sbjct: 447 QELNVASNQLK-SVP 460
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 663 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
L++S N++ + S I ++ L +L +SHN + F+ L Y+D+S+N+L
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 29/131 (22%)
Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCN 505
T+L + N +S + ++ +L KL +L +S N++Q +L +
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQ--------------------YLDIS 63
Query: 506 ISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLP--PEIGDSSQ 563
+ F + +L ++DLSHN +IS NL D+S N +LP E G+ SQ
Sbjct: 64 V---FKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSF-NAFDALPICKEFGNMSQ 116
Query: 564 LHVIDLSANHI 574
L + LS H+
Sbjct: 117 LKFLGLSTTHL 127
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 26/291 (8%)
Query: 91 NVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ 150
N NQI I P + N+ KL L + +N + Q NL+ L+ LYL+ + S P
Sbjct: 74 NGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNEDNISDISP-- 127
Query: 151 IGHLSYIEALHLFKNQ-LSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209
+ +L+ +L+L N LS P + + LN L +T + +K P + NLT+L L
Sbjct: 128 LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183
Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
L+ N + P + +L SL N++ P+ N T L++L + NN + P
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANXTRLNSLKIGNNKITDLSP- 238
Query: 270 EIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLE 329
+ NL L+ LE+G N+++ ++ I S + NL L+ L
Sbjct: 239 -LANLSQLTWLEIGTNQISD---INAVKDLTKLKXLNVGSNQISDI-SVLNNLSQLNSLF 293
Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
L +N+L + +G LTNL +L +N ++ P L SLS D ++
Sbjct: 294 LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKXDSAD 339
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 27/235 (11%)
Query: 63 NNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGT 122
+N + ISP A ++ + S+NL + + + P + N + L YL ++ +
Sbjct: 120 DNISDISPLA-------NLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDV 170
Query: 123 IPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFK---NQLSGPIPHEVGGLS 179
P I NL+ L L L+ NQ I L+ + +LH F NQ++ P V +
Sbjct: 171 TP--IANLTDLYSLSLNYNQIE-----DISPLASLTSLHYFTAYVNQITDITP--VANXT 221
Query: 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
LN L + +N + P L NL+ L L + N +S + + +L L L +G+N++
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQI 277
Query: 240 CGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS 294
S L NL+ L++L+L NN + IG L +L+ L L +N + PL+
Sbjct: 278 --SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 129/284 (45%), Gaps = 21/284 (7%)
Query: 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
I +L+ +E L+L NQ++ P + L L L + +N K + +L NLTNL LYL
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN--KITDISALQNLTNLRELYL 117
Query: 211 HNNSLSGSIPSEIGNLKSLSSLALG-NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
+ +++S P + NL SL LG N+ L PL N T L+ L + + P
Sbjct: 118 NEDNISDISP--LANLTKXYSLNLGANHNLSDLSPL--SNXTGLNYLTVTESKVKDVTP- 172
Query: 270 EIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGLE 329
I NL L L L N++ PL+ + + N L+ L+
Sbjct: 173 -IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI----TPVANXTRLNSLK 227
Query: 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389
+ +N+++ P L NL+ L + N +S + + +L L L++ N++S
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISD--IS 281
Query: 390 SLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
L NL+ L L+L++N L IG L +L L L N +++
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD 325
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263
+ A+L L NN ++ + NLK+L +L L NNK+ P L L+ LYL N
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 264 S---SSIPSEIGNLK------------------SLSILELGENRLNGS-IPLSXXXXXXX 301
+P + L+ + ++ELG N L S I
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 302 XXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 361
+IP G SL+ L L N+++ L L NLA L NS+S
Sbjct: 173 LSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
+ N L L L+ NKL +P L + + ++YLH+N +
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
SL EL L N + SL L NLA L L NS+S + N L L L NNKL
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 240 CGSIPLFLGNLTNLDTLYLRNNSFSS 265
+P L + + +YL NN+ S+
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
LDL +N+++ NL LH L L N+ + P L+ L L LS N L KE+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
P ++ ++L+ L + N ++ F +N ++ +++ N L
Sbjct: 116 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
L +P+++ +L +LQ +NK++ NL ++ L L +N +S + P LV
Sbjct: 43 LEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 468 KLTMLTLSDNQLQ 480
KL L LS NQL+
Sbjct: 101 KLERLYLSKNQLK 113
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 605 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD 664
+ +L L L L +N++S P + LVKL L LS NQ ++E+P K+ K L EL
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKT--LQELR 127
Query: 665 LSHNFLGKEIPSQICNMRSLEMLNLSHNNL--SDFIPRCFEEMNGLLYIDIS 714
+ N + K S + + ++ L N L S F+ M L YI I+
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 76 IHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKF 135
+H N + +V +NQ+ + ++G + LK + + +F G + LS ++
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVV---ELGT-NPLKSSGIENGAFQG-----MKKLSYIRI 178
Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 195
+ +PP + L HL N+++ + GL++L +L L+ N +
Sbjct: 179 ADTNITTIPQGLPPSLTEL------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 196 PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
SL N +L L+L+NN L +P + + K + + L NN +
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263
+ A+L L NN ++ + NLK+L +L L NNK+ P L L+ LYL N
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 264 S---SSIPSEIGNLK------------------SLSILELGENRLNGS-IPLSXXXXXXX 301
+P + L+ + ++ELG N L S I
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 302 XXXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 361
+IP G SL+ L L N+++ L L NLA L NS+S
Sbjct: 173 LSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
+ N L L L+ NKL +P L + + ++YLH+N +
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
SL EL L N + SL L NLA L L NS+S + N L L L NNKL
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 240 CGSIPLFLGNLTNLDTLYLRNNSFSS 265
+P L + + +YL NN+ S+
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 615 LDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674
LDL +N+++ NL LH L L N+ + P L+ L L LS N L KE+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
P ++ ++L+ L + N ++ F +N ++ +++ N L
Sbjct: 116 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
L +P+++ +L +LQ +NK++ NL ++ L L +N +S + P LV
Sbjct: 43 LEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 468 KLTMLTLSDNQLQ 480
KL L LS NQL+
Sbjct: 101 KLERLYLSKNQLK 113
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 605 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD 664
+ +L L L L +N++S P + LVKL L LS NQ ++E+P K+ K L EL
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKT--LQELR 127
Query: 665 LSHNFLGKEIPSQICNMRSLEMLNLSHNNL--SDFIPRCFEEMNGLLYIDIS 714
+ N + K S + + ++ L N L S F+ M L YI I+
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 76 IHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKF 135
+H N + +V +NQ+ + ++G + LK + + +F G + LS ++
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVV---ELGT-NPLKSSGIENGAFQG-----MKKLSYIRI 178
Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 195
+ +PP + L HL N+++ + GL++L +L L+ N +
Sbjct: 179 ADTNITTIPQGLPPSLTEL------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 196 PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
SL N +L L+L+NN L +P + + K + + L NN +
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGS 386
L L DN+++ P +L NL YL N L G++P + +L L+ LDL N+L+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 387 IPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS----LGNL 442
L +L L++ N L +PR I L L L L N+L SI H L +L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSL 161
Query: 443 THMTLLA 449
TH L
Sbjct: 162 THAYLFG 168
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLE 655
NQ+ P SLI L+ L L SN+L +L +L L+L TNQ +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 656 KLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLY 710
+L+HL EL + N L E+P I + L L L N L F+ ++ L +
Sbjct: 110 RLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 193 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN 252
S+P G TN ILYLH+N ++ P +L +L L LG+N+L G++P+
Sbjct: 32 ASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPV------- 81
Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXX 312
F S L L++L+LG N+L +P +
Sbjct: 82 --------GVFDS--------LTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL 124
Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPH-YLGNLTNLAAFYLYKN 357
+P I L L+ L L N+L SIPH L++L YL+ N
Sbjct: 125 TELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN 169
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 27/156 (17%)
Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXX 310
TN LYL +N + P +L +L L LG N+L G++P+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV--------------- 83
Query: 311 XXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 370
+L L+ L+L N+L+ L +L ++ N L+ +P I L
Sbjct: 84 --------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134
Query: 371 KSLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 405
L++L L +N+L SIPH + L++L YL N
Sbjct: 135 THLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 337 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLT 395
+S+P G TN YL+ N ++ P +L +L L L N+L G++P + +LT
Sbjct: 32 ASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 396 NLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
L +L L +N L L L EL + NKL+ + + LTH+T LAL N L
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Query: 456 SGVIPEELGNLVKLTMLTLSDN 477
+ L LT L N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 26/127 (20%)
Query: 381 NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLG 440
+K S+P G TN ILYLH N + P +L +L EL LG N+L
Sbjct: 28 SKRHASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 441 NLTHMTLLALYDNALSGV-----------------------IPEELGNLVKLTMLTLSDN 477
+LT +T+L L N L+ + +P + L LT L L N
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145
Query: 478 QLQGSIP 484
QL+ SIP
Sbjct: 146 QLK-SIP 151
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGS 242
L L N + P +L NL LYL +N L G++P + +L L+ L LG N+L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 243 IPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
L +L L++ N + +P I L L+ L L +N+L SIP
Sbjct: 104 PSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 93 NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI-GNLSMLKFLYLSANQFSGRIPPQI 151
NQI + P ++ LK L L SN G +P + +L+ L L L NQ +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP-PSLGNLTNLAILYL 210
L +++ L + N+L+ +P + L+ L LAL N LK SIP + L++L YL
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYL 166
Query: 211 HNN 213
N
Sbjct: 167 FGN 169
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA---LTSNF 190
+ LYL NQ + P L ++ L+L NQL G +P VG SL +L L +N
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP--VGVFDSLTQLTVLDLGTNQ 99
Query: 191 LKGSIPPS--LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL-FL 247
L ++ PS L +L L++ N L+ +P I L L+ LAL N+L SIP
Sbjct: 100 L--TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAF 155
Query: 248 GNLTNLDTLYLRNNSF 263
L++L YL N +
Sbjct: 156 DRLSSLTHAYLFGNPW 171
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 54/168 (32%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 99 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYI 157
+P I +++ YL N + P +L LK LYL +NQ G +P + L+ +
Sbjct: 34 VPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQL 90
Query: 158 EALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLS 216
L L NQL+ +P V L L EL + N L +P + LT+L L L N L
Sbjct: 91 TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148
Query: 217 GSIPSEIGNLKSLSSLA----LGNNKLCGSIPLFLGNLTNLDTLYLRN 260
SIP G LSSL GN C D +YLRN
Sbjct: 149 -SIPH--GAFDRLSSLTHAYLFGNPWDCEC----------RDIMYLRN 183
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 670
+ YL L N+L + +L L L YL L+ NQ +Q +P + +KL +L EL L N L
Sbjct: 65 VRYLALGGNKLHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQL 121
Query: 671 GKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
+ +P + + + +L LNL+HN L F+++ L +D+SYN+L
Sbjct: 122 -QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
L LTNL L N L S+P+ + L +L L L EN+L LTNL L
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 402 LHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP 460
L N L S+P+ + L +L EL L N+L + LT + L LY N L V
Sbjct: 140 LAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 461 EELGNLVKLTMLTLSDNQLQGSIP 484
L L + L DN + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 11/161 (6%)
Query: 606 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELD 664
L L+ L L N+L + L L YLNL+ NQ +Q +P + +KL +L+ELD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELD 163
Query: 665 LSHNFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 723
LS+N L + +P + + + L+ L L N L F+ + L YI + N P
Sbjct: 164 LSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Query: 724 NSTAFSDALMEALQGNEGLCGDIKGF---QSCKASKSHKPA 761
S E + + G+ + G S K S S KP
Sbjct: 223 GIRYLS----EWINKHSGVVRNSAGSVAPDSAKCSGSGKPV 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
S + L +L+ L L N+L S LTNL L +N L L +L+ L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSI 435
+L+ N+L LTNL L L N L S+P + L L +L+L N+L +
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 436 SHSLGNLTHMTLLALYDNALSGVIP 460
LT + + L+DN P
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 2/160 (1%)
Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS 168
++YL L N + L+ L +L L+ NQ L+ ++ L L +NQL
Sbjct: 65 VRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 169 GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKS 228
L++L L L N L+ LTNL L L N L L
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
L L L N+L LT+L ++L +N + + P
Sbjct: 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 58/143 (40%), Gaps = 2/143 (1%)
Query: 151 IGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209
+ L+ + L L NQL +P+ V L++L EL L N L+ LTNL L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
L +N L L +L+ L L N+L LT L L L N S
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 270 EIGNLKSLSILELGENRLNGSIP 292
L SL + L +N + + P
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN 165
++ LK L L N L+ L +L L+ NQ L+ + L L N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 166 QLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIP 220
QL +P V L+ L +L L N LK LT+L ++LH+N + P
Sbjct: 168 QLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 78/200 (39%), Gaps = 35/200 (17%)
Query: 198 SLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 256
+L LTNL L L N L S+P+ + L +L L L N+L LTNL L
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 257 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIP 316
L +N S L +L+ L+L N+L S+P
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-------------------------SLP 173
Query: 317 SEI-GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 375
+ L L L L N+L S LT+L +L+ N + P ++ LS
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG----IRYLSE 229
Query: 376 LDLSENKLSGSIPHSLGNLT 395
NK SG + +S G++
Sbjct: 230 W---INKHSGVVRNSAGSVA 246
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 64/152 (42%), Gaps = 27/152 (17%)
Query: 424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI 483
L LG NKL + IS +L LT++T L L N L + L L L L +NQLQ S+
Sbjct: 68 LALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SL 124
Query: 484 PXXXXXXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTF 543
P F LT+++L+HN + K NL
Sbjct: 125 PDGV----------------------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 544 DVSVNNIIGSLPPEIGDS-SQLHVIDLSANHI 574
D+S N + SLP + D +QL + L N +
Sbjct: 163 DLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%)
Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
E + L LEL +N +S+ P NL NL L N L L +L+ L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 436
D+SENK+ + + +L NL L + N L+ R L SL +L L L++ +
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 437 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLS 475
+L +L + +L L ++ + L +L +L +S
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 127/322 (39%), Gaps = 37/322 (11%)
Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
+ L L N+ + ++E L L +N +S P L +L L L SN LK
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNL 253
L+NL L + N + + +L +L SL +G+N L L +L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 254 DTLYLRNNSFSSSIPSE-IGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXX 312
+ L L + +SIP+E + +L L +L L +N S
Sbjct: 155 EQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYS------------------ 195
Query: 313 GSIPSEIGNLKSLSGLELAD-NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLK 371
L L LE++ L + P+ L L NL + + +L+ + +L
Sbjct: 196 ------FKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLV 248
Query: 372 SLSNLDLSENKLS---GSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 428
L L+LS N +S GS+ H L L + ++ L P L L L +
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLV---GGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 429 NKLSN---SISHSLGNLTHMTL 447
N+L+ S+ HS+GNL + L
Sbjct: 306 NQLTTLEESVFHSVGNLETLIL 327
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 107/278 (38%), Gaps = 26/278 (9%)
Query: 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262
T +L L N + E + L L L N + P NL NL TL LR+N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNL 322
L +L+ L++ EN++ + ++ NL
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKI---------------------VILLDYMFQDLYNL 130
Query: 323 KSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IGNLKSLSNLDLSEN 381
KS LE+ DN+L L +L L K +L+ SIP+E + +L L L L
Sbjct: 131 KS---LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186
Query: 382 KLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441
++ +S L L +L + L ++ +L L + L+ ++ +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
Query: 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
L ++ L L N +S + L L++L + L QL
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 9/164 (5%)
Query: 556 PEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYL 615
PE G ++ ++DL N I E N + P +L L L
Sbjct: 27 PE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85
Query: 616 DLSSNRLSNSIP----RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 671
L SNRL IP L NL KL ++S N+ + + + L +L L++ N L
Sbjct: 86 GLRSNRLK-LIPLGVFTGLSNLTKL---DISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 672 KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 715
+ SLE L L NL+ ++GL+ + + +
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 348 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
++ YL N + +P E+ N K L+ +DLS N++S S N+T L L L N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL 455
PR LKSL L L N +S + +L+ ++ LA+ N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSI 195
LYL NQF+ +P ++ + ++ + L N++S ++ L L L+ N L+
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 196 PPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
P + L +L +L LH N +S +L +LS LA+G N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 400 LYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI 459
LYL N +P+E+ N K L + L +N++S + S N+T + L L N L +
Sbjct: 36 LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 460 PEELGNLVKLTMLTLSDNQL 479
P L L +L+L N +
Sbjct: 95 PRTFDGLKSLRLLSLHGNDI 114
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
+P E+ N K L+ ++L++N +S+ N+T L L N L P LKSL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
L L N +S + +L+ L+ L + +N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 622 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 681
L IPR + L L NQF +P +L HL+ +DLS+N + NM
Sbjct: 25 LPKGIPRDVTELY------LDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77
Query: 682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 730
L L LS+N L PR F+ + L + + N++ +P AF+D
Sbjct: 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEG-AFND 124
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 96 FGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLS 155
F ++P ++ N L +DLS+N S N++ L L LS N+ P L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 156 YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL 191
+ L L N +S LS+L+ LA+ +N L
Sbjct: 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
LYL N + +P E+ N K L+ + L NN++ N+T L TL L N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 268 PSEIGNLKSLSILELGEN 285
P LKSL +L L N
Sbjct: 95 PRTFDGLKSLRLLSLHGN 112
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 24/121 (19%)
Query: 599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658
F +P EL + L +DLS+NR+S +S N+ +L L LS N+ ++ IP
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIP------- 94
Query: 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
P ++SL +L+L N++S F +++ L ++ I N L
Sbjct: 95 ----------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Query: 719 H 719
+
Sbjct: 139 Y 139
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 395 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 454
T L + SN L +P+ I + + EL L N+ + + L N H+TL+ L +N
Sbjct: 9 TCLDTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR 65
Query: 455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
+S + + N+ +L L LS N+L+ P
Sbjct: 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%)
Query: 195 IPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD 254
+P L N +L ++ L NN +S N+ L +L L N+L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 287
L L N S +L +LS L +G N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLA 398
+P L N +L L N +S N+ L L LS N+L P + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 399 ILYLHSNTLLGSIPREIGNLKSLFELQLGDNKL 431
+L LH N + +L +L L +G N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 155 SYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
S L L N+L +PH V L+ L +L+L+ N ++ LT L ILYLH N
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 214 SLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIP 268
L S+P+ + L L LAL N+L S+P LT+L ++L N + S P
Sbjct: 87 KLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 321 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLS 379
L L+ L L+ N++ S LT L YL++N L S+P+ + L L L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 380 ENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPR 413
N+L S+P + LT+L ++LH+N S PR
Sbjct: 109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 83 RVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ 142
R NS LT+V G S L+L SN L+ L L LS NQ
Sbjct: 13 RCNSKGLTSV---------PTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ 63
Query: 143 FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSL-G 200
L+ + L+L +N+L +P+ V L+ L ELAL +N LK S+P +
Sbjct: 64 IQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLK-SVPDGIFD 121
Query: 201 NLTNLAILYLHNNSLSGSIP 220
LT+L ++LH N S P
Sbjct: 122 RLTSLQKIWLHTNPWDCSCP 141
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 324 SLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSEN 381
S SG E+ N +S+P G ++ L N L S+P + L L+ L LS+N
Sbjct: 6 SCSGTEIRCNSKGLTSVP--TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQN 62
Query: 382 KLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSL 439
++ S+P + LT L ILYLH N L S+P + L L EL L N+L +
Sbjct: 63 QIQ-SLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120
Query: 440 GNLTHMTLLALYDNALSGVIPE 461
LT + + L+ N P
Sbjct: 121 DRLTSLQKIWLHTNPWDCSCPR 142
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLK 419
S+P+ I + S + L+L NKL S+PH + LT L L L N + S+P + L
Sbjct: 21 SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLT 76
Query: 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
L L L +NKL + + LT + LAL N L V L L + L N
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
Query: 480 QGSIP 484
S P
Sbjct: 137 DCSCP 141
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 615 LDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGK 672
L+L SN+L S+P + L +L L+LS NQ IQ +P + +KL L+ L L N L +
Sbjct: 33 LELESNKL-QSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL-Q 89
Query: 673 EIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDA 731
+P+ + + + L+ L L N L F+ + L I + N P S
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149
Query: 732 LMEALQGNEGLCGDIKGFQSCKASKSHKPA 761
L + Q +G S K S S KP
Sbjct: 150 LNKNSQKEQG---------SAKCSGSGKPV 170
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 343 LGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILY 401
L LTNL L N L S+P+ + L +L L L EN+L LTNL LY
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 402 LHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP 460
L+ N L S+P+ + L +L L L +N+L + LT + L+L DN L V
Sbjct: 140 LYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 461 EELGNLVKLTMLTLSDN 477
L LT + L +N
Sbjct: 199 GVFDRLTSLTHIWLLNN 215
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 390 SLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLL 448
+L LTNL L L N L S+P + L +L EL L +N+L + LT++T L
Sbjct: 80 ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 449 ALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
LY N L + L LT L L +NQLQ S+P
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLP 173
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
S + L +L+ L L N+L S LTNL L +N L L +L+ L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLS--- 432
L N+L LTNL L L +N L S+P + L L +L L DN+L
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 433 NSISHSLGNLTHMTLL-ALYDNALSGVI 459
+ + L +LTH+ LL +D A S ++
Sbjct: 198 DGVFDRLTSLTHIWLLNNPWDCACSDIL 225
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 151 IGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209
+ L+ + L L NQL +P+ V L++L EL L N L+ LTNL LY
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269
L++N L L +L+ L L NN+L LT L L L +N S
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDG 199
Query: 270 EIGNLKSLS 278
L SL+
Sbjct: 200 VFDRLTSLT 208
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 2/164 (1%)
Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
I + ++YL L N + L+ L +L L+ NQ L+ ++ L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSE 222
+NQL L++L L L N L+ LTNL L L NN L
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGV 176
Query: 223 IGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 266
L L L+L +N+L LT+L ++L NN + +
Sbjct: 177 FDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCA 220
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFL 670
+ YL L N+L + +L L L YL L+ NQ +Q +P + +KL +L EL L N L
Sbjct: 65 VRYLALGGNKLHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQL 121
Query: 671 GKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
+ +P + + + +L L L HN L F+++ L +D+ N+L
Sbjct: 122 -QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ 170
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 58/145 (40%), Gaps = 9/145 (6%)
Query: 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA---LTSNFLKGSIPPSLGNLTNLAI 207
I +L + L L N+L H++ L L L LT N L+ LTNL
Sbjct: 59 IQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 208 LYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSI 267
L L N L L +L+ L L +N+L LTNL L L NN S
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 268 PSEIGNLKSLSILELGENRLNGSIP 292
L L L L +N+L S+P
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLK-SVP 197
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 604 SELGSLIQLEYLDLSSNRLSNSIPRSL-GNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLS 661
S L L L YL L+ N+L S+P + L L L L NQ +Q +P + +KL +L+
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLT 136
Query: 662 ELDLSHNFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
L L HN L + +P + + + +L L+L +N L F+++ L + ++ N+L
Sbjct: 137 YLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 606 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELD 664
L L+ L L N+L + L L YL L NQ +Q +P + +KL +L+ LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLD 163
Query: 665 LSHNFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYI 711
L +N L + +P + + + L+ L+L+ N L F+ + L +I
Sbjct: 164 LDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 205 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 264
L LYL+ NSL+ +P+EI NL +L L L +N+L S+P LG+ L Y +N
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MV 305
Query: 265 SSIPSEIGNLKSLSILELGENRL 287
+++P E GNL +L L + N L
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPL 328
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 397 LAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS 456
L LYL+ N+L +P EI NL +L L L N+L+ S+ LG+ + +DN ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 457 GVIPEELGNLVKLTMLTLSDNQLQ 480
+P E GNL L L + N L+
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGNPLE 329
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 40/120 (33%)
Query: 539 NLGTFDVSVN--------------NIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGX 584
NL F++S N N + LP EI + S L V+DLS N +
Sbjct: 233 NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-------- 284
Query: 585 XXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644
LP+ELGS QL+Y N ++ ++P GNL L +L + N
Sbjct: 285 -----------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 30/139 (21%)
Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXX 312
L LYL NS + +P+EI NL +L +L+L NRL
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT------------------------ 283
Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
S+P+E+G+ L DN + +++P GNL NL + N L +I KS
Sbjct: 284 -SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQF-LKILTEKS 340
Query: 373 LSNL--DLSENKLSGSIPH 389
++ L L +N+ +PH
Sbjct: 341 VTGLIFYLRDNRPEIPLPH 359
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 601 QLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL 660
+LP+E+ +L L LDLS NRL+ S+P LG+ +L Y N + +P + L +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318
Query: 661 SELDLSHNFLGKEI 674
L + N L K+
Sbjct: 319 QFLGVEGNPLEKQF 332
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 99 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
+P +I N+S L+ LDLS N + ++P ++G+ LK+ Y N + +P + G+L ++
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQ 319
Query: 159 AL 160
L
Sbjct: 320 FL 321
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 637 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
H L+LS Q I I + K L+ L L+ N L E+P++I N+ +L +L+LSHN L+
Sbjct: 227 HALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS 284
Query: 697 F---IPRCFE 703
+ CF+
Sbjct: 285 LPAELGSCFQ 294
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 391 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 450
G L +L L L N L G P + ELQLG+NK+ + L + L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 451 YDNALSGVIPEELGNLVKLTMLTLSDN 477
YDN +S V+P +L LT L L+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 136 LYLSANQFSGRIPPQ--IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
L L+ N+ GRI G L ++ L L +NQL+G P+ G S + EL L N +K
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 237
L L L L++N +S +P +L SL+SL L +N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 199 LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLGNLTNLDTLY 257
G L +L L L N L+G P+ + L LG NK+ S +FLG L L TL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG-LHQLKTLN 108
Query: 258 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS 294
L +N S +P +L SL+ L L N N + L+
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 630 LGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLN 688
G L L L L NQ P E H+ EL L N + KEI +++ + L+ LN
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLN 108
Query: 689 LSHNNLSDFIPRCFEEMNGLLYIDISYN 716
L N +S +P FE +N L ++++ N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 26/125 (20%)
Query: 524 NNFYGQISSD--WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE 581
+N G+ISSD +G+ P+L ++ N + G P +S + + L N I E
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-----KE 92
Query: 582 IGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL 641
I N++F LG L QL+ L+L N++S +P S +L L LNL
Sbjct: 93 I------------SNKMF------LG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
Query: 642 STNQF 646
++N F
Sbjct: 134 ASNPF 138
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 330 LADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIP 388
L DNEL S G L +L L +N L+G P+ + L L ENK+
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 389 HSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 429
L L L L+ N + +P +L SL L L N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN-HIIGKIPSE--IGXXXXXXXXXX 593
CP + + + + G EI LH +L N + +G+I S+ G
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 594 XXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 653
NQL G P+ ++ L L N++ + L +L LNL NQ +P
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 654 LEKLIHLSELDLSHN 668
E L L+ L+L+ N
Sbjct: 122 FEHLNSLTSLNLASN 136
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSL-GNLTHMTLLALYDNALSGVIPEELGNL 466
L IPR+I + EL L DN+L S L G L H+ L L N L+G+ P
Sbjct: 20 LKEIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 467 VKLTMLTLSDNQLQ 480
+ L L +N+++
Sbjct: 78 SHIQELQLGENKIK 91
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%)
Query: 93 NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIG 152
NQ+ GI P S ++ L L N L LK L L NQ S +P
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 153 HLSYIEALHLFKN 165
HL+ + +L+L N
Sbjct: 124 HLNSLTSLNLASN 136
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 313 GSIPSE--IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 370
G I S+ G L L LEL N+L+ P+ +++ L +N + L
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSN 405
L L+L +N++S +P S +L +L L L SN
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 16/209 (7%)
Query: 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG--SIPLFL 247
F+ PPS + T L N + S+ LK L +L L N L + L
Sbjct: 343 FIHMVCPPSPSSFT---FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 248 GNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXX 306
N+++L+TL + NS +S + +S+ +L L N L GS+
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLD 456
Query: 307 XXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSE 366
SIP ++ +L++L L +A N+L S LT+L +L+ N + P
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG- 515
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLT 395
++ LS NK SG + +S G++
Sbjct: 516 ---IRYLSEWI---NKHSGVVRNSAGSVA 538
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 320 GNLKSLSGLELADNELSS--SIPHYLGNLTNLAAFYLYKNSL-SGSIPSEIGNLKSLSNL 376
LK L L L N L + + N+++L + NSL S + +S+ L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 377 DLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSIS 436
+LS N L+GS+ L + +L LH+N ++ SIP+++ +L++L EL + N+L +
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 437 HSLGNLTHMTLLALYDNALSGVIP 460
LT + + L+DN P
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
Query: 612 LEYLDLSSNRL-SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFL 670
LE LD+S N L S++ R+ + LNLS+N + L + + LDL HN
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV--LDL-HNNR 461
Query: 671 GKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSD 730
IP + ++++L+ LN++ N L F+ + L YI + N P S
Sbjct: 462 IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS- 520
Query: 731 ALMEALQGNEGLCGDIKGF---QSCKASKSHKPASRKIWVVIV 770
E + + G+ + G S K S S KP I +V
Sbjct: 521 ---EWINKHSGVVRNSAGSVAPDSAKCSGSGKPVRSIICPTLV 560
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 22/59 (37%)
Query: 612 LEYLDLSSNRLSN----------------------SIPRSLGNLVKLHYLNLSTNQFIQ 648
LEYLD+S NRL N + + GNL KL +L LS +F Q
Sbjct: 102 LEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 112 LDLSSNSFSGTI----PPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 167
L+LSSN +G++ PP++ K L L N+ IP + HL ++ L++ NQL
Sbjct: 433 LNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQL 485
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN--NSLSGSIPSEIGN 225
L+SL + L N + P I YL N SG + + G+
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP---------GIRYLSEWINKHSGVVRNSAGS 536
Query: 226 LKSLSSLALGNNKLCGSI 243
+ S+ G+ K SI
Sbjct: 537 VAPDSAKCSGSGKPVRSI 554
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 562 SQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNR 621
+QL +DL+A H+ G LPS + L L+ L LS N
Sbjct: 275 TQLQELDLTATHLKG-------------------------LPSGMKGLNLLKKLVLSVNH 309
Query: 622 LSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK---LEKLIHLSELDLSHNFL-GKEIPS- 676
S N L +L + N ++++ + LEKL +L LDLSHN + + S
Sbjct: 310 FDQLCQISAANFPSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSL 367
Query: 677 QICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
Q+ N+ L+ LNLSHN + F+E L +D+++ LH P S
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 131/353 (37%), Gaps = 58/353 (16%)
Query: 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKL 383
S+ L L ++ S T L L L G +PS + L L L LS N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 384 SGSIPHSLGNLTNLAILYLHSNTL-----LGSIPREIGNLKSLFELQLGDNKLSNSISHS 438
S N +L LY+ N +G + + +GNL++L +L D + S+ S
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEK-LGNLQTL-DLSHNDIEASDCCSLQ 368
Query: 439 LGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXX 498
L NL+H+ L L N G+ + +L +L L+ +L + P
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 499 XXHLTCNISESFGIH--PKLTFIDLSHNNFY-GQISSDWGKCPNLGTFDVSVNNIIGSLP 555
+ + S + P L ++L N+F G I+ ++ +GSL
Sbjct: 429 LTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK------------TNLLQTVGSLE 476
Query: 556 PEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYL 615
I S L ID A H +GK + ++
Sbjct: 477 VLILSSCGLLSIDQQAFHSLGK----------------------------------MSHV 502
Query: 616 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
DLS N L+ SL +L + YLNL+ N P L L S ++LSHN
Sbjct: 503 DLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHL 162
+G + D+SS G + +L+ L ++FS + ++ L L
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSVESLN------LQEHRFSDISSTTFQCFTQLQELDL 282
Query: 163 FKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN----SLSGS 218
L G +P + GL+ L +L L+ N S N +L LY+ N L
Sbjct: 283 TATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVG 341
Query: 219 IPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLS 278
++GNL++L L+ + + L L NL++L TL L +N L
Sbjct: 342 CLEKLGNLQTL-DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 279 ILELGENRLNGSIPLS 294
+L+L RL+ + P S
Sbjct: 401 LLDLAFTRLHINAPQS 416
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 514 PKLTFIDLSHN--NFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
P L F+DLS N +F G S SD+G +L D+S N +I +G QL +D
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 571 ANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL 630
+++ K SE S SL L YLD+S +
Sbjct: 405 HSNL--KQMSEF---------------------SVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 631 GNLVKLHYLNLSTNQFIQE-IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689
L L L ++ N F + +P +L +L+ LDLS L + P+ ++ SL++LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGP-------IPNSTAF 728
SHNN ++ +N L +D S N + P+S AF
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSL 359
IG+LK+L L +A N + S +P Y NLTNL L N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
L+ L YL+L L + IP +L LV+L L LS N+ P + L L +L L H
Sbjct: 155 LVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728
+ + +++SLE LNLSHNNL F ++ L + +++N H +
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNC-DVLWL 271
Query: 729 SDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRK 764
S L E + N C ++ H PA K
Sbjct: 272 SWWLKETVPSNTTCC-----------ARCHAPAGLK 296
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 599 FGQLPS----ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654
F ++PS +LG L +LEY+ ++ LV L YLNL +++IP L
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAA----------FEGLVNLRYLNLGMCN-LKDIP-NL 174
Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDIS 714
L+ L EL+LS N L P + SL L L H ++ F+++ L +++S
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 715 YNEL 718
+N L
Sbjct: 235 HNNL 238
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 97/259 (37%), Gaps = 52/259 (20%)
Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
++L L N HL ++E L L KN + GL SLN L L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGN-LKSLSSLALGNNKLCGSIPLFLGNLTN 252
+ L+ L L+L NN + SIPS N + SL L LG L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLD-------------LGELKR 143
Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXX 312
L+ Y+ +F L +L L LG L
Sbjct: 144 LE--YISEAAFEG--------LVNLRYLNLGMCNLK------------------------ 169
Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
IP+ + L L LEL+ N L P LT+L +L ++ + +LKS
Sbjct: 170 -DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 373 LSNLDLSENKLSGSIPHSL 391
L L+LS N L S+PH L
Sbjct: 228 LEELNLSHNNLM-SLPHDL 245
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN-LKSLSNLDLSE 380
L SL+ LEL DN L++ L+ L +L N + SIPS N + SL LDL E
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE 140
Query: 381 -NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF---ELQLGDNKLSNSIS 436
+L + L NL L L L ++I NL +L EL+L N+L
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNL-----KDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 437 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
S LT + L L ++ + +L L L LS N L S+P
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLP 242
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668
L+ L YL+L L + IP +L LV+L L LS N+ P + L L +L L H
Sbjct: 155 LVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728
+ + +++SLE LNLSHNNL F ++ L + +++N H +
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNC-DVLWL 271
Query: 729 SDALMEALQGNEGLCGDIKGFQSCKASKSHKPASRK 764
S L E + N C ++ H PA K
Sbjct: 272 SWWLKETVPSNTTCC-----------ARCHAPAGLK 296
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 599 FGQLPS----ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654
F ++PS +LG L +LEY+ ++ LV L YLNL +++IP L
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAA----------FEGLVNLRYLNLGMCN-LKDIP-NL 174
Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDIS 714
L+ L EL+LS N L P + SL L L H ++ F+++ L +++S
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 715 YNEL 718
+N L
Sbjct: 235 HNNL 238
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 97/259 (37%), Gaps = 52/259 (20%)
Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
++L L N HL ++E L L KN + GL SLN L L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGN-LKSLSSLALGNNKLCGSIPLFLGNLTN 252
+ L+ L L+L NN + SIPS N + SL L LG L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLD-------------LGELKR 143
Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXX 312
L+ Y+ +F L +L L LG L
Sbjct: 144 LE--YISEAAFEG--------LVNLRYLNLGMCNLK------------------------ 169
Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372
IP+ + L L LEL+ N L P LT+L +L ++ + +LKS
Sbjct: 170 -DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKS 227
Query: 373 LSNLDLSENKLSGSIPHSL 391
L L+LS N L S+PH L
Sbjct: 228 LEELNLSHNNLM-SLPHDL 245
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 322 LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN-LKSLSNLDLSE 380
L SL+ LEL DN L++ L+ L +L N + SIPS N + SL LDL E
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE 140
Query: 381 -NKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF---ELQLGDNKLSNSIS 436
+L + L NL L L L ++I NL +L EL+L N+L
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNL-----KDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 437 HSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484
S LT + L L ++ + +L L L LS N L S+P
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLP 242
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 600 GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-LEKLI 658
+LPS L L L+ L LS+N+ N S N L +L++ N E+ LE L
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 659 HLSELDLSHNFLGKEIPSQICNMR-----SLEMLNLSHNNLSDFIPRCFEEMNGLLYIDI 713
+L ELDLSH+ + S CN++ L+ LNLS+N F+E L +D+
Sbjct: 351 NLRELDLSHDDIET---SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Query: 714 SYNEL 718
++ L
Sbjct: 408 AFTRL 412
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 68 ISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQI 127
ISP + G+ C V SINL + F I S L+ LDL++ S +P +
Sbjct: 243 ISPAVFEGL-CEM--SVESINLQK-HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297
Query: 128 GNLSMLKFLYLSANQF------SGRIPPQIGHLS 155
LS LK L LSAN+F S P + HLS
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 606 LGSLIQLEYLDLSSNRL--SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 663
L +L L LDLS + + S+ L NL L LNLS N+ + ++ L L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 664 DLSHNFLG-KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPI 722
DL+ L K+ S N+ L++LNLSH+ L + F+ + L ++++ N H P
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN--HFPK 463
Query: 723 PN 724
N
Sbjct: 464 GN 465
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 9/212 (4%)
Query: 198 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP--LFLGNLTNLDT 255
S +L +L IL L N + L +L++L L +N+L +IP F+ L+ L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFV-YLSKLKE 140
Query: 256 LYLRNNSFSSSIPSEIGN-LKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGS 314
L+LRNN SIPS N + SL L+LGE + I
Sbjct: 141 LWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374
IP+ + L L L+L+ N LS+ P L +L ++ ++ + + NL+SL
Sbjct: 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258
Query: 375 NLDLSENKLSGSIPHSLGN-LTNLAILYLHSN 405
++L+ N L+ +PH L L +L ++LH N
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 34/143 (23%)
Query: 599 FGQLPSELGSLIQLEYLDLSS-NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL 657
F ++PS L LDL RLS + L L YLNL+ ++EIP L L
Sbjct: 156 FNRIPS-------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPL 206
Query: 658 IHLSELDLSHNFLGKEIP----------------SQIC--------NMRSLEMLNLSHNN 693
I L ELDLS N L P SQI N++SL +NL+HNN
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266
Query: 694 LSDFIPRCFEEMNGLLYIDISYN 716
L+ F ++ L I + +N
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHN 289
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 605 ELGSLIQLEYLDLSSNRLSNSIPRSLGN-LVKLHYLNLSTNQFIQEIPIKL-EKLIHLSE 662
EL SL QL L N+L S+P + N L L YLNLSTNQ +Q +P + +KL L E
Sbjct: 50 ELTSLTQLY---LGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE 104
Query: 663 LDLSHNFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGP 721
L L+ N L + +P + + + L+ L L N L F+ + L YI + N
Sbjct: 105 LALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163
Query: 722 IPNSTAFSDALMEALQGNEGLCGDIKGF---QSCKASKSHKPA 761
P S E + + G+ + G S K S S KP
Sbjct: 164 CPGIRYLS----EWINKHSGVVRNSAGSVAPDSAKCSGSGKPV 202
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN-LKSLSNLDLSENKLSGS 386
L+L N L S LT+L YL N L S+P+ + N L SL+ L+LS N+L S
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 387 IPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSISHSLGNLTH 444
+P+ + LT L L L++N L S+P + L L +L+L N+L + LT
Sbjct: 91 LPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 445 MTLLALYDNALSGVIP 460
+ + L+DN P
Sbjct: 150 LQYIWLHDNPWDCTCP 165
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 354 LYKNSLSGSIPSEI-GNLKSLSNLDLSENKLSGSIPHSLGN-LTNLAILYLHSNTLLGSI 411
L NSL S+P+ + L SL+ L L NKL S+P+ + N LT+L L L +N L S+
Sbjct: 35 LETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL-QSL 91
Query: 412 PREI-GNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 470
P + L L EL L N+L + LT + L LY N L V L L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 471 MLTLSDNQLQGSIP 484
+ L DN + P
Sbjct: 152 YIWLHDNPWDCTCP 165
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ 166
++ YLDL +NS L+ L LYL N+ L+ + L+L NQ
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 167 LSGPIPHEV-GGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-G 224
L +P+ V L+ L ELAL +N L+ LT L L L+ N L S+P +
Sbjct: 88 LQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145
Query: 225 NLKSLSSLALGNNKLCGSIP--LFLGNLTNLDTLYLRNNSFS 264
L SL + L +N + P +L N + +RN++ S
Sbjct: 146 RLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS 187
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 347 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSN 405
T + + + S+ IP++ + LDL N L S+P+ + LT+L LYL N
Sbjct: 10 TTVECYSQGRTSVPTGIPAQT------TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGN 62
Query: 406 TLLGSIPREIGN-LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELG 464
L S+P + N L SL L L N+L + + LT + LAL N L +
Sbjct: 63 K-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121
Query: 465 NLVKLTMLTLSDNQLQGSIP 484
L +L L L NQL+ S+P
Sbjct: 122 KLTQLKDLRLYQNQLK-SVP 140
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 314 SIPSEIGN-LKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLK 371
S+P+ + N L SL+ L L+ N+L S LT L L N L S+P + L
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT 124
Query: 372 SLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIP 412
L +L L +N+L S+P + LT+L ++LH N + P
Sbjct: 125 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 178 LSSLNELALTSNFLKGSIPPSLGN-LTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALG 235
L+SL +L L N L+ S+P + N LT+L L L N L S+P+ + L L LAL
Sbjct: 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALN 108
Query: 236 NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
N+L LT L L L N S L SL + L +N + + P
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 190
S +K LS ++ + H + +E L L +N+++ + GL+ L +L L+ NF
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 191 LKGSIPPSL-GNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGN 249
L GSI + NL L +L L N + L +L LAL N+L
Sbjct: 335 L-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 250 LTNLDTLYLRNNSFSSSIP 268
LT+L ++L N + S P
Sbjct: 394 LTSLQKIWLHTNPWDCSCP 412
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 94 QIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-G 152
+IF ++ + + L+ L L+ N + L+ L L LS N F G I ++
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFE 344
Query: 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLH 211
+L +E L L N + GL +L ELAL +N LK S+P + LT+L ++LH
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 403
Query: 212 NNSLSGSIP 220
N S P
Sbjct: 404 TNPWDCSCP 412
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 153/426 (35%), Gaps = 59/426 (13%)
Query: 376 LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE--IGNLKSLFELQLGDNKLSN 433
+DLS N ++ S L +L L + T G + R L SL L+L N+
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK----LTMLTLSDNQLQGSIPXXXXX 489
+ + L ++ +L L L G + GN K L ML L DN ++ P
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 490 XXXXXXXXXXXHLTCNISESF---------GIHP---KLTFIDLSHNNFYGQISSDWGKC 537
LT N +S G H +L+ I L N Y W KC
Sbjct: 152 NMRRFHVL---DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL---GWEKC 205
Query: 538 PN------LGTFDVSVNNIIGSLPPEIGDS---SQLHVIDLSANHIIG--------KIPS 580
N + T D+S N S+ D+ +++ + LS ++ +G K P
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265
Query: 581 EIGXXXXXXXXXXXXN----QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636
+ ++F L S LE L L+ N ++ + L L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 637 HYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695
LNLS N F+ I ++ E L L LDLS+N + + +L+ L L N L
Sbjct: 326 LKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 696 DFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKAS 755
F+ + L I + N P S L + Q +G S K S
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG---------SAKCS 435
Query: 756 KSHKPA 761
S KP
Sbjct: 436 GSGKPV 441
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 26/124 (20%)
Query: 315 IPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLKSL 373
+ S + L L LA NE++ + LT+L L +N L GSI S + NL L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKL 349
Query: 374 SNLDLSENKLSG-----------------------SIPHSL-GNLTNLAILYLHSNTLLG 409
LDLS N + S+P + LT+L ++LH+N
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409
Query: 410 SIPR 413
S PR
Sbjct: 410 SCPR 413
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 114/304 (37%), Gaps = 29/304 (9%)
Query: 366 EIGNLKSLSNLD---LSENKLSGSI--PHSLGNLTNLAILYLHSNTLLGSIPREIG-NLK 419
E G L+NL+ L++ L G++ + LT+L +L L N + P N++
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154
Query: 420 SLFELQLGDNKLSNSISHSLGNL--THMTLLALYDNALSGVIP-----EELGNLVK---L 469
L L NK+ + L N H TLL L L + E+ GN K +
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214
Query: 470 TMLTLSDNQLQGSIPXXXXXXXX-XXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYG 528
T L LS N + S+ + N+ SFG F D + F G
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HTNFKDPDNFTFKG 271
Query: 529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGXXXXX 588
+S C D+S + I L + L + L+ N I KI
Sbjct: 272 LEASGVKTC------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTH 324
Query: 589 XXXXXXXNQLFGQLPSEL-GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI 647
G + S + +L +LE LDLS N + +S L L L L TNQ +
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-L 383
Query: 648 QEIP 651
+ +P
Sbjct: 384 KSVP 387
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN 165
++KL +L+L N +L+ L L L+ NQ + HL+ ++ L+L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 166 QLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIPSEIG 224
QL L+ L EL L +N L+ SIP + LTNL L L N L
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL----RNNS 262
L L ++ L N+ + + +TLYL R NS
Sbjct: 177 RLGKLQTITLFGNQF---------DCSRCETLYLSQWIRENS 209
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
S+PS I L+L L++ LT L L N L +L L
Sbjct: 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 374 SNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKL 431
L L+ N+L+ S+P + +LT L LYL N L S+P + L L EL+L N+L
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQL 143
Query: 432 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 482
+ + + LT++ L+L N L V L KL +TL NQ S
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 202 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRN 260
LT L L L N L +L L +L L NN+L S+PL +LT LD LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 261 NSFSSSIPSEI-GNLKSLSILELGENRLNGSIP 292
N S+PS + L L L L N+L SIP
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 20/199 (10%)
Query: 75 GIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLK 134
G CN + +++ + IP + + LDL S + L+ L
Sbjct: 9 GCTCNEGKKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTGLATLSDATFRGLTKLT 62
Query: 135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS----GPIPHEVGGLSSLNELALTSNF 190
+L L NQ L+ + L L NQL+ G H L+ L++L L N
Sbjct: 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH----LTQLDKLYLGGNQ 118
Query: 191 LKGSIPPSL-GNLTNLAILYLHNNSLSGSIPS-EIGNLKSLSSLALGNNKLCGSIPL-FL 247
LK S+P + LT L L L+ N L SIP+ L +L +L+L N+L S+P
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAF 175
Query: 248 GNLTNLDTLYLRNNSFSSS 266
L L T+ L N F S
Sbjct: 176 DRLGKLQTITLFGNQFDCS 194
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 177 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALG 235
GL+ L L L N L+ +LT L L L NN L+ S+P + +L L L LG
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLG 115
Query: 236 NNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
N+L S+P LT L L L N S L +L L L N+L S+P
Sbjct: 116 GNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSH 667
L +L +L+L N+L +L +L L L+ NQ + +P+ + + L L +L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGG 116
Query: 668 NFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
N L K +PS + + + L+ L L+ N L F+++ L + +S N+L
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%)
Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 672
E LDL S L+ + L KL +LNL NQ + L L L L++N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
++ L+ L L N L F+ + L + ++ N+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANH 573
KLT+++L +N + + LGT ++ NN + SLP + D +QL + L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 574 IIGKIPSEI-GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR-SLG 631
+ +PS + NQL L L+ L LS+N+L S+P +
Sbjct: 119 L-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 632 NLVKLHYLNLSTNQF 646
L KL + L NQF
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ-------------EI 650
S +++ LDL++ L N +P + + L L L+ N F Q ++
Sbjct: 271 STFRCFTRVQELDLTAAHL-NGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDL 329
Query: 651 PIK------------LEKLIHLSELDLSHNFLGKEIPS--QICNMRSLEMLNLSHNNLSD 696
IK LEKL +L +LDLSH+ + Q+ N+R L+ LNLS+N
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
Query: 697 FIPRCFEEMNGLLYIDISYNELHGPIPNS 725
+ F+E L +D+++ LH P+S
Sbjct: 390 LEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN 165
++KL +L+L N +L+ L L L+ NQ + HL+ ++ L+L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 166 QLSGPIPHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNNSLSGSIP---- 220
QL L+ L EL L +N L+ SIP + LTNL L L N L S+P
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 221 SEIGNLKSLS 230
+G L++++
Sbjct: 176 DRLGKLQTIT 185
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
S+PS I L+L L++ LT L L N L +L L
Sbjct: 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 374 SNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKL 431
L L+ N+L+ S+P + +LT L LYL N L S+P + L L EL+L N+L
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQL 143
Query: 432 SNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGS 482
+ + + LT++ L+L N L V L KL +TL NQ S
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 202 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRN 260
LT L L L N L +L L +L L NN+L S+PL +LT LD LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 261 NSFSSSIPSEI-GNLKSLSILELGENRLNGSIP 292
N S+PS + L L L L N+L SIP
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 20/199 (10%)
Query: 75 GIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLK 134
G CN + +++ + IP + + LDL S + L+ L
Sbjct: 9 GCTCNEGKKEVDCQGKSLDSVPSGIP------ADTEKLDLQSTGLATLSDATFRGLTKLT 62
Query: 135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS----GPIPHEVGGLSSLNELALTSNF 190
+L L NQ L+ + L L NQL+ G H L+ L++L L N
Sbjct: 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH----LTQLDKLYLGGNQ 118
Query: 191 LKGSIPPSL-GNLTNLAILYLHNNSLSGSIPS-EIGNLKSLSSLALGNNKLCGSIPL-FL 247
LK S+P + LT L L L+ N L SIP+ L +L +L+L N+L S+P
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAF 175
Query: 248 GNLTNLDTLYLRNNSFSSS 266
L L T+ L N F S
Sbjct: 176 DRLGKLQTITLFGNQFDCS 194
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 62/140 (44%), Gaps = 6/140 (4%)
Query: 154 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHN 212
L+ + L+L NQL L+ L L L +N L S+P + +LT L LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 213 NSLSGSIPSEI-GNLKSLSSLALGNNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSE 270
N L S+PS + L L L L N+L SIP LTNL TL L N S
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 271 IGNLKSLSILELGENRLNGS 290
L L + L N+ + S
Sbjct: 175 FDRLGKLQTITLFGNQFDCS 194
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 177 GLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEI-GNLKSLSSLALG 235
GL+ L L L N L+ +LT L L L NN L+ S+P + +L L L LG
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLG 115
Query: 236 NNKLCGSIPL-FLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292
N+L S+P LT L L L N S L +L L L N+L S+P
Sbjct: 116 GNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSH 667
L +L +L+L N+L +L +L L L+ NQ + +P+ + + L L +L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGG 116
Query: 668 NFLGKEIPSQICN-MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
N L K +PS + + + L+ L L+ N L F+++ L + +S N+L
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%)
Query: 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 672
E LDL S L+ + L KL +LNL NQ + L L L L++N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719
++ L+ L L N L F+ + L + ++ N+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANH 573
KLT+++L +N + + LGT ++ NN + SLP + D +QL + L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 574 IIGKIPSEI-GXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR-SLG 631
+ +PS + NQL L L+ L LS+N+L S+P +
Sbjct: 119 L-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 632 NLVKLHYLNLSTNQF 646
L KL + L NQF
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 102/256 (39%), Gaps = 38/256 (14%)
Query: 514 PKLTFIDLSHN--NFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570
P L F+DLS N +F G S SD+G +L D+S N +I ++ QL +D
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404
Query: 571 ANHIIGKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL 630
+++ K SE S SL L YLD+S +
Sbjct: 405 HSNL--KQMSEF---------------------SVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 631 GNLVKLHYLNLSTNQFIQE-IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689
L L L ++ N F + +P +L +L+ LDLS L + P+ ++ SL++LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGF 749
+ N L F+ + L I + N P S L + Q +G
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG-------- 553
Query: 750 QSCKASKSHKPASRKI 765
S K S S KP I
Sbjct: 554 -SAKCSGSGKPVRSII 568
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEALHLFK 164
+ L YLD+S LS L+ L ++ N F P I L + L L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 165 NQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSGSIP 220
QL P LSSL L + SN LK S+P + LT+L ++LH N S P
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 322 LKSLSGLELADNELSSS-IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSE 380
L SL L++A N + +P L NL L + L P+ +L SL L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 381 NKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPR 413
N+L S+P + LT+L ++LH+N S PR
Sbjct: 504 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSL 359
IG+LK+L L +A N + S +P Y NLTNL L N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 169/442 (38%), Gaps = 73/442 (16%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEI---------- 367
IG+LK+L L +A N + S +P Y NLTNL L N + +++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203
Query: 368 ---------------GNLKS--LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS 410
G K L L L N S ++ + + LA L +H +LG
Sbjct: 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC--IQGLAGLEVH-RLVLGE 260
Query: 411 IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTL-LALYDNALSGVIP--EELGNLV 467
E GNL+ K S L NLT LA D L G+I L N+
Sbjct: 261 FRNE-GNLE----------KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309
Query: 468 KLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIHP--------KLTFI 519
++++++ +++ HL ++ FG P +LTF
Sbjct: 310 SFSLVSVTIERVKD-----------FSYNFGWQHLEL-VNCKFGQFPTLKLKSLKRLTFT 357
Query: 520 DLSHNNFYGQISSDWGKCPNLGTFDVSVN--NIIGSLPPEIGDSSQLHVIDLSANHIIGK 577
N + ++ P+L D+S N + G + L +DLS N +I
Sbjct: 358 SNKGGNAFSEVD-----LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM 412
Query: 578 IPSEIGXXXXXXXXXXXXNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 637
+ +G N S SL L YLD+S + L L
Sbjct: 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472
Query: 638 YLNLSTNQFIQE-IPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
L ++ N F + +P +L +L+ LDLS L + P+ ++ SL++LN+SHNN
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Query: 697 FIPRCFEEMNGLLYIDISYNEL 718
++ +N L +D S N +
Sbjct: 533 LDTFPYKCLNSLQVLDYSLNHI 554
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ----EIPIKLEKLIH 659
S+ G+ I L+YLDLS N + LG L +L +L+ + Q + + L LI+
Sbjct: 392 SDFGT-ISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD-FIPRCFEEMNGLLYIDISYNEL 718
L D+SH + SLE+L ++ N+ + F+P F E+ L ++D+S +L
Sbjct: 450 L---DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 719 HGPIPNSTAF 728
P TAF
Sbjct: 507 EQLSP--TAF 514
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 54/241 (22%)
Query: 361 GSIPSEIGNLKSLSNLDLSENKLS----------GSIPHSLGNLTNLAILYLHSNTL--- 407
G+ SE+ +L SL LDLS N LS G+I +L+ ++ + SN L
Sbjct: 362 GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLE 420
Query: 408 -LGSIPREIGNLKSLFELQLG---DNKLSNSISHS---------LGNLTHMTLLALYDNA 454
L + + NLK + E + N + ISH+ L+ + +L + N+
Sbjct: 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480
Query: 455 LS-GVIPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNISESFGIH 513
+P+ L LT L LS QL+ P +F
Sbjct: 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-----------------------AFNSL 517
Query: 514 PKLTFIDLSHNNFYGQISSDWGKCPN-LGTFDVSVNNIIGSLPPEIGD-SSQLHVIDLSA 571
L +++SHNNF+ + + KC N L D S+N+I+ S E+ S L ++L+
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 572 N 572
N
Sbjct: 577 N 577
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEI-GNLK 371
S+P+ I K L L +N+++ P +L NL Y N L+ +IP+ + L
Sbjct: 25 ASVPAGIPTDKQR--LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLT 81
Query: 372 SLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSN 405
L+ LDL++N L SIP + NL +L +YL++N
Sbjct: 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 361 GSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS 420
S+P+ I K L L+ N+++ P +L NL LY +SN L L
Sbjct: 25 ASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453
L +L L DN L + + NL +T + LY+N
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 136 LYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSLNELALTSNFLKGS 194
L+L+ NQ + P HL ++ L+ N+L+ IP V L+ L +L L N LK
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 195 IPPSLGNLTNLAILYLHNN 213
+ NL +L +YL+NN
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 189 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG 248
N S+P G T+ L+L+NN ++ P +L +L L +NKL
Sbjct: 21 NIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 249 NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
LT L L L +N S NLKSL+ + L N
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 32.7 bits (73), Expect = 0.89, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIP 675
L++N+++ P +LV L L ++N+ + IP + +KL L++LDL+ N L K IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL-KSIP 97
Query: 676 -SQICNMRSLEMLNLSHN 692
N++SL + L +N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 337 SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTN 396
+S+P G T+ +L N ++ P +L +L L + NKL+ LT
Sbjct: 25 ASVP--AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 397 LAILYLHSNTLLGSIPR-EIGNLKSLFELQLGDN 429
L L L+ N L SIPR NLKSL + L +N
Sbjct: 83 LTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 217
+ L L NQ++ P L +L +L SN L LT L L L++N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 218 SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 260
NLKSL+ + L NN + D +YLRN
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPW---------DCECRDIMYLRN 129
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 217 GSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKS 276
S+P+ I K L L NN++ P +L NL LY +N ++ L
Sbjct: 25 ASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 277 LSILELGENRLNGSIP 292
L+ L+L +N L SIP
Sbjct: 83 LTQLDLNDNHLK-SIP 97
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 314 SIPSEI---GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 370
+ PS+ G SG LA S+P G T YLY N ++ P L
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLA------SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRL 53
Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR-EIGNLKSLFELQLGDN 429
L+ LDL N+L+ LT L L L+ N L SIPR NLKSL + L +N
Sbjct: 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112
Query: 430 KLSNSISHSL 439
+ S L
Sbjct: 113 PWDCACSDIL 122
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
+ +D S L+ S+P + T +LYL+ N + P L L L L +N+L+
Sbjct: 12 TTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
+ LT +T L+L DN L + NL LT + L +N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%)
Query: 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262
T +LYL++N ++ P L L+ L L NN+L LT L L L +N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 263 FSSSIPSEIGNLKSLSILELGEN 285
S NLKSL+ + L N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
L S+P I + L L DN+++ LT +T L L +N L+ + L
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 468 KLTMLTLSDNQLQGSIP 484
+LT L+L+DNQL+ SIP
Sbjct: 79 QLTQLSLNDNQLK-SIP 94
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 217
+ L+L+ NQ++ P L+ L L L +N L LT L L L++N L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 218 SIPS-EIGNLKSLSSLALGNN 237
SIP NLKSL+ + L NN
Sbjct: 92 SIPRGAFDNLKSLTHIWLLNN 112
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 112 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPI 171
+D S S + ++P G + + LYL NQ + P L+ + L L NQL+
Sbjct: 14 VDCSGKSLA-SVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 172 PHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNN 213
L+ L +L+L N LK SIP + NL +L ++L NN
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNF 190
S +K LS ++ + H + +E L L +N+++ + GL+ L ELAL +N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQ 334
Query: 191 LKGSIPPSL-GNLTNLAILYLHNNSLSGSIP 220
LK S+P + LT+L ++LH N S P
Sbjct: 335 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 130/345 (37%), Gaps = 47/345 (13%)
Query: 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSA---------NQFSGRIPPQIGHLSYI 157
+ + Y+DLS NS + L L+FL + N F G I L Y
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 158 EALHLFKNQLSGPIPHEVGGLSS--LNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSL 215
+ L L +G EV L+ L+ L+ NF K LT+L +L L +N++
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP--------LTSLEMLVLRDNNI 141
Query: 216 SGSIPSEIG-NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE---- 270
P+ N++ L L NK+ L N LR +S + +E
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 271 ---IGNL---KSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIG--NL 322
GN S++ L+L N S+ ++ S G N
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 323 K-----SLSGLE--------LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 369
K + GLE L+ +++ + + + T+L L +N ++ +
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 370 LKSLSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPR 413
L L L L N+L S+P + LT+L ++LH+N S PR
Sbjct: 322 LTHLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 365
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 314 SIPSEI---GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 370
+ PS+ G SG LA S+P G T YLY N ++ P L
Sbjct: 10 ACPSQCSCSGTTVDCSGKSLA------SVPT--GIPTTTQVLYLYDNQITKLEPGVFDRL 61
Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR-EIGNLKSLFELQLGDN 429
L+ LDL N+L+ LT L L L+ N L SIPR NLKSL + L +N
Sbjct: 62 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 120
Query: 430 KLSNSISHSL 439
+ S L
Sbjct: 121 PWDCACSDIL 130
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
+ +D S L+ S+P + T +LYL+ N + P L L L L +N+L+
Sbjct: 20 TTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
+ LT +T L+L DN L + NL LT + L +N
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 193 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN 252
S+P G T +LYL++N ++ P L L+ L L NN+L LT
Sbjct: 30 ASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L L +N S NLKSL+ + L N
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
L S+P I + L L DN+++ LT +T L L +N L+ + L
Sbjct: 29 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 468 KLTMLTLSDNQLQGSIP 484
+LT L+L+DNQL+ SIP
Sbjct: 87 QLTQLSLNDNQLK-SIP 102
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G + + L+L+ NQ++ P L+ L L L +N L LT L L L+
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 212 NNSLSGSIPS-EIGNLKSLSSLALGNN 237
+N L SIP NLKSL+ + L NN
Sbjct: 95 DNQLK-SIPRGAFDNLKSLTHIWLLNN 120
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 112 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPI 171
+D S S + ++P G + + LYL NQ + P L+ + L L NQL+
Sbjct: 22 VDCSGKSLA-SVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 172 PHEVGGLSSLNELALTSNFLKGSIPP-SLGNLTNLAILYLHNN 213
L+ L +L+L N LK SIP + NL +L ++L NN
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 120
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQE-IPIKLEKLIHLSELDLS 666
SL L YLD+S + L L L ++ N F + +P +L +L+ LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 667 HNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
L + P+ ++ SL++LN+SHNN ++ +N L +D S N +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 103/251 (41%), Gaps = 34/251 (13%)
Query: 314 SIPSEIGNLKSLSGLELADNELSSSIPH-YLGNLTNLAAFYLYKNSLS--GSIPSEIGNL 370
S+P+ I + S + LEL N+L S +PH LT L L N LS G
Sbjct: 21 SVPTGIPS--SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAIL-YLHSNTLLGSIPREIGNLKSLFELQLGDN 429
SL LDLS N + + LG L L L + HSN S +L++L L +
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 430 KLSNSISHSLGNLTHMTLLALYDNALS-GVIPEELGNLVKLTMLTLSDNQLQGSIPXXXX 488
+ + L+ + +L + N+ +P+ L LT L LS QL+ P
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--- 193
Query: 489 XXXXXXXXXXXXHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN-LGTFDVSV 547
+F L +++SHNNF+ + + KC N L D S+
Sbjct: 194 --------------------AFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSL 232
Query: 548 NNIIGSLPPEI 558
N+I+ S E+
Sbjct: 233 NHIMTSKKQEL 243
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ----EIPIKLEKLIH 659
S+ G+ L+YLDLS N + LG L +L +L+ + Q + + L LI+
Sbjct: 73 SDFGT-TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD-FIPRCFEEMNGLLYIDISYNEL 718
L D+SH + SLE+L ++ N+ + F+P F E+ L ++D+S +L
Sbjct: 131 L---DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 719 HGPIPNSTAF 728
P TAF
Sbjct: 188 EQLSP--TAF 195
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 314 SIPSEI---GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL 370
+ PS+ G SG LA S+P G T YLY N ++ P L
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLA------SVP--TGIPTTTQVLYLYDNRITKLEPGVFDRL 53
Query: 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR-EIGNLKSLFELQLGDN 429
L+ LDL N+L+ LT L L L+ N L SIPR NL+SL + L +N
Sbjct: 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLRSLTHIWLLNN 112
Query: 430 KLSNSISHSL 439
+ S L
Sbjct: 113 PWDCACSDIL 122
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN 433
+ +D S L+ S+P G T +LYL+ N + P L L L L +N+L+
Sbjct: 12 TTVDCSGKSLA-SVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 434 SISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
+ LT +T L+L DN L + NL LT + L +N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLV 467
L S+P I + L L DN+++ LT +T L L +N L+ + L
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 468 KLTMLTLSDNQLQGSIP 484
+LT L+L+DNQL+ SIP
Sbjct: 79 QLTQLSLNDNQLK-SIP 94
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 193 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN 252
S+P G T +LYL++N ++ P L L+ L L NN+L LT
Sbjct: 22 ASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L L +N S NL+SL+ + L N
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658
+P+ + + Q+ YL NR++ P L +L L+L NQ +KL
Sbjct: 21 LASVPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 659 HLSELDLSHNFLGKEIPS-QICNMRSLEMLNLSHN 692
L++L L+ N L K IP N+RSL + L +N
Sbjct: 79 QLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNN 112
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 217
+ L+L+ N+++ P L+ L L L +N L LT L L L++N L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 218 SIPS-EIGNLKSLSSLALGNN 237
SIP NL+SL+ + L NN
Sbjct: 92 SIPRGAFDNLRSLTHIWLLNN 112
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 319 IGNLKSLSGLELADN--ELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
+ ++++LS LEL N E+ S H +L NL + N L G + L L
Sbjct: 143 LTDMRNLSHLELRANIEEMPS---HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQL 199
Query: 377 DLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPR 413
+L+ N+L S+P + LT+L ++LH+N S PR
Sbjct: 200 NLASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 89/210 (42%), Gaps = 5/210 (2%)
Query: 198 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 257
+ +L +L +L L NS+ L SL++L L +N L L+ L L+
Sbjct: 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153
Query: 258 LRNNSFSSSIPSEIGN-LKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIP 316
LRNN SIPS N + SL L+LGE + I +P
Sbjct: 154 LRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 317 SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNL 376
+ + L L LE++ N P L++L ++ + +S + L SL L
Sbjct: 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 377 DLSENKLSGSIPHSLGN-LTNLAILYLHSN 405
+L+ N LS S+PH L L L L+LH N
Sbjct: 272 NLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSM----------- 132
+ SI N++ ++ +G + KL+Y+ S +F G + NL M
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYI--SEGAFEGLFNLKYLNLGMCNIKDMPNLTP 216
Query: 133 ---LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN 189
L+ L +S N F P LS ++ L + +Q+S + GL+SL EL L N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 190 FLKGSIPPSLGN-LTNLAILYLHNN 213
L S+P L L L L+LH+N
Sbjct: 277 NL-SSLPHDLFTPLRYLVELHLHHN 300
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 319 IGNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLD 377
I L +L+ L L++N+++ P YL N+T L +L N L+ P + NLK+L L
Sbjct: 62 IQYLPNLTSLNLSNNQITDISPIQYLPNVTKL---FLNGNKLTDIKP--LANLKNLGWLF 116
Query: 378 LSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISH 437
L ENK+ L + + + + L L L LG+NK+++
Sbjct: 117 LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH----LPQLESLYLGNNKITDITV- 171
Query: 438 SLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQL 479
L LT + L+L DN +S ++P L L KL L LS N +
Sbjct: 172 -LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 28/157 (17%)
Query: 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
I +L + +L+L NQ++ P + L ++ +L L N L P L NL NL L+L
Sbjct: 62 IQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 211 HNNSLSGSIP-----------------SEIG---NLKSLSSLALGNNKLCGSIPLFLGNL 250
N + S+I +L L SL LGNNK+ L L
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRL 175
Query: 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 287
T LDTL L +N S +P + L L L L +N +
Sbjct: 176 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 349 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL 408
+ L +N++ P K L +DLS N++S P + L +L L L+ N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 409 GSIPREIGNLKSLFE-------LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 461
+P KSLFE L L NK++ + +L ++ LL+LYDN L +
Sbjct: 94 -ELP------KSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 462 ELGNLVKLTMLTLSDN 477
L + + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 349 LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL 408
+ L +N++ P K L +DLS N++S P + L +L L L+ N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 409 GSIPREIGNLKSLFE-------LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPE 461
+P KSLFE L L NK++ + +L ++ LL+LYDN L +
Sbjct: 94 -ELP------KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146
Query: 462 ELGNLVKLTMLTLSDN 477
L + + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 52/216 (24%)
Query: 516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 575
LT ID+SHN L D +N I L ++ +QL +D S N I
Sbjct: 139 LTEIDVSHN-------------TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183
Query: 576 GKIPSEIGXXXXXXXXXXXXNQLFGQLPSELGSL--------IQLEYLDLSSNRLSNSIP 627
S+ N+L +L + ++ IQL +LD SSN+L+
Sbjct: 184 ELDVSQ--------------NKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT---E 226
Query: 628 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS-------ELDLSHNFLGKEIPSQICN 680
+ L +L Y + S N + L KL L E+DL+HN ++ C
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC- 285
Query: 681 MRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716
R ++ L+++HN ++ C + G+ +D+S N
Sbjct: 286 -RKIKELDVTHNT-QLYLLDC--QAAGITELDLSQN 317
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 19/152 (12%)
Query: 333 NELSSSIPHYLGNL-------TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG 385
N++ IP Y L T L A ++K L L ++ S NK++
Sbjct: 24 NKIPEHIPQYTAELRLNNNEFTVLEATGIFKK------------LPQLRKINFSNNKITD 71
Query: 386 SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHM 445
+ + + + L SN L + L+SL L L N+++ + S L+ +
Sbjct: 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131
Query: 446 TLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
LL+LYDN ++ V P L L+ L L N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 142 QFSGRIPPQIGHLSYIEALHLFK------------NQLSGPIPHEVGGLSSLNELALTSN 189
Q++ + + +EA +FK N+++ G S +NE+ LTSN
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGN 249
L+ L +L L L +N ++ L S+ L+L +N++ P
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 250 LTNLDTLYLRNNSFSSSI 267
L +L TL L N F+ +
Sbjct: 152 LHSLSTLNLLANPFNCNC 169
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN+L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
G L L L N L S+P L +L+ LD+S N+L+ +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 458
N L P + L +L L +N+L+ + L L ++ L L +N+L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN+L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
G L L L N L S+P L +L+ LD+S N+L+ +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 458
N L P + L +L L +N+L+ + L L ++ L L +N+L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 606 LGSLIQLEYLDLSSNRLSNSIPRS--------LGNLVKLHYLNLSTNQFIQEIPIKLEK- 656
L L +LE LDL N L+ + L L LH LNL +N F EIP+++ K
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKD 568
Query: 657 LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF-EEMNGLLYIDISY 715
L L +DL N L S N SL+ LNL N ++ + F L +D+ +
Sbjct: 569 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 628
Query: 716 N 716
N
Sbjct: 629 N 629
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 181/476 (38%), Gaps = 98/476 (20%)
Query: 84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 143
+ +NLT+ NQ+ + S+L LD+ N+ S P L MLK L L N+
Sbjct: 37 ITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 144 SGRIPPQIGHLSYIEALHLF---------------KNQLSGPIPH--------------- 173
S + + LHL KN ++ + H
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 155
Query: 174 --------------------EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
++ SSL +L L+SN +K P + L L+L+N
Sbjct: 156 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 215
Query: 214 SLSGSIPS----EIGNLKSLSSLALGNNKL-CGSIPLFLG----NLTNLDTLY-----LR 259
L S+ E+ N S+ +L+L N++L S FLG NLT LD Y +
Sbjct: 216 QLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 274
Query: 260 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPS-- 317
N+SF+ E L+ +I L + L+G L S+P
Sbjct: 275 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---LFNVRYLNLKRSFTKQSISLASLPKID 331
Query: 318 --EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 375
LK L L + DN++ + L NL YL SLS S S L++L+N
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK--YL---SLSNSFTS----LRTLTN 382
Query: 376 -------------LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP-REIGNLKSL 421
L+L++NK+S + L +L +L L N + + +E L+++
Sbjct: 383 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 442
Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI--PEELGNLVKLTMLTLS 475
FE+ L NK +S + + L L AL V P L LT+L LS
Sbjct: 443 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 498
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 100 PPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKF------LYLSANQFSGRIPPQIGH 153
P I N++K K + S++FS +G+L +L L+ ++ G +
Sbjct: 392 PLHILNLTKNKISKIESDAFSW-----LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 446
Query: 154 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG--SIPPSLGNLTNLAILYLH 211
LSY + L L +N +P SL L L LK S P L NL IL L
Sbjct: 447 LSYNKYLQLTRNSF-ALVP-------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 498
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLC--------GSIPLFLGNLTNLDTLYLRNNSF 263
NN+++ + L+ L L L +N L G FL L++L L L +N F
Sbjct: 499 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 558
Query: 264 SSSIPSEI-GNLKSLSILELGENRLNGSIPLS 294
IP E+ +L L I++LG N LN ++P S
Sbjct: 559 DE-IPVEVFKDLFELKIIDLGLNNLN-TLPAS 588
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 698
LNL+ NQ + + L+ LD+ N + K P + L++LNL HN LS
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 699 PRCF 702
+ F
Sbjct: 100 DKTF 103
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 606 LGSLIQLEYLDLSSNRLSNSIPRS--------LGNLVKLHYLNLSTNQFIQEIPIKLEK- 656
L L +LE LDL N L+ + L L LH LNL +N F EIP+++ K
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKD 558
Query: 657 LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF-EEMNGLLYIDISY 715
L L +DL N L S N SL+ LNL N ++ + F L +D+ +
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Query: 716 N 716
N
Sbjct: 619 N 619
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 181/476 (38%), Gaps = 98/476 (20%)
Query: 84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 143
+ +NLT+ NQ+ + S+L LD+ N+ S P L MLK L L N+
Sbjct: 27 ITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 144 SGRIPPQIGHLSYIEALHLF---------------KNQLSGPIPH--------------- 173
S + + LHL KN ++ + H
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 174 --------------------EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
++ SSL +L L+SN +K P + L L+L+N
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 214 SLSGSIPS----EIGNLKSLSSLALGNNKL-CGSIPLFLG----NLTNLDTLY-----LR 259
L S+ E+ N S+ +L+L N++L S FLG NLT LD Y +
Sbjct: 206 QLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 260 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPS-- 317
N+SF+ E L+ +I L + L+G L S+P
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---LFNVRYLNLKRSFTKQSISLASLPKID 321
Query: 318 --EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 375
LK L L + DN++ + L NL YL SLS S S L++L+N
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK--YL---SLSNSFTS----LRTLTN 372
Query: 376 -------------LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP-REIGNLKSL 421
L+L++NK+S + L +L +L L N + + +E L+++
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI--PEELGNLVKLTMLTLS 475
FE+ L NK +S + + L L AL V P L LT+L LS
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 100 PPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGH-LSYIE 158
P I N++K K + S++FS L L+ L L N+ + Q L I
Sbjct: 382 PLHILNLTKNKISKIESDAFSW--------LGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG--SIPPSLGNLTNLAILYLHNNSLS 216
++L N+ + + SL L L LK S P L NL IL L NN+++
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493
Query: 217 GSIPSEIGNLKSLSSLALGNNKLC--------GSIPLFLGNLTNLDTLYLRNNSFSSSIP 268
+ L+ L L L +N L G FL L++L L L +N F IP
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IP 552
Query: 269 SEI-GNLKSLSILELGENRLNGSIPLS 294
E+ +L L I++LG N LN ++P S
Sbjct: 553 VEVFKDLFELKIIDLGLNNLN-TLPAS 578
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 698
LNL+ NQ + + L+ LD+ N + K P + L++LNL HN LS
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 699 PRCF 702
+ F
Sbjct: 90 DKTF 93
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN+L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
G L L L N L S+P L +L+ LD+S N+L+ +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 458
N L P + L +L L +N+L+ + L L ++ L L +N+L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN+L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
G L L L N L S+P L +L+ LD+S N+L+ +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 458
N L P + L +L L +N+L+ + L L ++ L L +N+L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 606 LGSLIQLEYLDLSSNRLSNSIPRS--------LGNLVKLHYLNLSTNQFIQEIPIKLEK- 656
L L +LE LDL N L+ + L L LH LNL +N F EIP+++ K
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKD 563
Query: 657 LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCF-EEMNGLLYIDISY 715
L L +DL N L S N SL+ LNL N ++ + F L +D+ +
Sbjct: 564 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 623
Query: 716 N 716
N
Sbjct: 624 N 624
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 181/476 (38%), Gaps = 98/476 (20%)
Query: 84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 143
+ +NLT+ NQ+ + S+L LD+ N+ S P L MLK L L N+
Sbjct: 32 ITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 144 SGRIPPQIGHLSYIEALHLF---------------KNQLSGPIPH--------------- 173
S + + LHL KN ++ + H
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 150
Query: 174 --------------------EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213
++ SSL +L L+SN +K P + L L+L+N
Sbjct: 151 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 210
Query: 214 SLSGSIPS----EIGNLKSLSSLALGNNKL-CGSIPLFLG----NLTNLDTLY-----LR 259
L S+ E+ N S+ +L+L N++L S FLG NLT LD Y +
Sbjct: 211 QLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 269
Query: 260 NNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPS-- 317
N+SF+ E L+ +I L + L+G L S+P
Sbjct: 270 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---LFNVRYLNLKRSFTKQSISLASLPKID 326
Query: 318 --EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSN 375
LK L L + DN++ + L NL YL SLS S S L++L+N
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK--YL---SLSNSFTS----LRTLTN 377
Query: 376 -------------LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP-REIGNLKSL 421
L+L++NK+S + L +L +L L N + + +E L+++
Sbjct: 378 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 437
Query: 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI--PEELGNLVKLTMLTLS 475
FE+ L NK +S + + L L AL V P L LT+L LS
Sbjct: 438 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 493
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 100 PPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKF------LYLSANQFSGRIPPQIGH 153
P I N++K K + S++FS +G+L +L L+ ++ G +
Sbjct: 387 PLHILNLTKNKISKIESDAFSW-----LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 441
Query: 154 LSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG--SIPPSLGNLTNLAILYLH 211
LSY + L L +N +P SL L L LK S P L NL IL L
Sbjct: 442 LSYNKYLQLTRNSF-ALVP-------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 493
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLC--------GSIPLFLGNLTNLDTLYLRNNSF 263
NN+++ + L+ L L L +N L G FL L++L L L +N F
Sbjct: 494 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 553
Query: 264 SSSIPSEI-GNLKSLSILELGENRLNGSIPLS 294
IP E+ +L L I++LG N LN ++P S
Sbjct: 554 DE-IPVEVFKDLFELKIIDLGLNNLN-TLPAS 583
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 698
LNL+ NQ + + L+ LD+ N + K P + L++LNL HN LS
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 699 PRCF 702
+ F
Sbjct: 95 DKTF 98
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 313 GSIPSEIGNLKSLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLK 371
+ PS+ S SG + E S +S+P G T +LY N ++ P +L
Sbjct: 11 AACPSQC----SCSGTTVNCQERSLASVP--AGIPTTTQVLHLYINQITKLEPGVFDSLT 64
Query: 372 SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDN 429
L+ L+L+ N+L+ LT L L LH N L SIP + NLKSL + L +N
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNN 122
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG 217
+ LHL+ NQ++ P L+ L L L N L LT L L LH N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK- 101
Query: 218 SIPSEI-GNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN 260
SIP + NLKSL+ + L NN + D LYL+N
Sbjct: 102 SIPMGVFDNLKSLTHIYLFNNPW---------DCECSDILYLKN 136
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI--- 652
NQ+ P SL QL YL+L+ N+L+ L KL +L L NQ ++ IP+
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ-LKSIPMGVF 108
Query: 653 -KLEKLIHL 660
L+ L H+
Sbjct: 109 DNLKSLTHI 117
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 599 FGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKL 657
+P+ + + Q+ L L N+++ P +L +L YLNL+ NQ + +P+ + +KL
Sbjct: 31 LASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQ-LTALPVGVFDKL 87
Query: 658 IHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHN 692
L+ L L N L K IP + N++SL + L +N
Sbjct: 88 TKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 602 LPSELGSLIQ----LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL 657
L L SL Q ++ LDLS N LS L KL LNLS+N + + LE L
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESL 79
Query: 658 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695
L LDL++N++ + + S+E L+ ++NN+S
Sbjct: 80 STLRTLDLNNNYVQELLVGP-----SIETLHAANNNIS 112
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSL-EMLNLSHNNLSDF 697
LNL+ NQ + P + L+ LD N + K P ++C + L ++LNL HN LS
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQI 88
Query: 698 IPRCFEEMNGLLYIDISYNELH 719
+ F L +D+ N +H
Sbjct: 89 SDQTFVFCTNLTELDLMSNSIH 110
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 107/278 (38%), Gaps = 16/278 (5%)
Query: 459 IPEELGNLVKLTMLTLSDNQLQGSIPXXXXXXXXXXXXXXXXHLTCNIS-ESFGIHPKLT 517
IP++L + +T+L L+ NQL+ P + + E I P L
Sbjct: 19 IPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 518 FIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGK 577
++L HN + C NL D+ N+I + L +DLS N G
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN---GL 133
Query: 578 IPSEIGX---XXXXXXXXXXXNQLFGQLPSELGSL--IQLEYLDLSSNRLSNSIPRSLGN 632
+++G N++ EL L L LDLSSN L P
Sbjct: 134 SSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQT 193
Query: 633 LVKLHYLNLSTNQFIQEIPIKLEKLIH---LSELDLSHNFLGKEIPSQICNMR--SLEML 687
+ KL L L+ Q + KL + + L L++N L S ++ +L L
Sbjct: 194 IGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 688 NLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725
+LS+NNL D F + L Y+ + YN + P S
Sbjct: 254 DLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 178/482 (36%), Gaps = 102/482 (21%)
Query: 84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF 143
+ +NLT+ NQ+ + P S+L LD NS S P L +LK L L N+
Sbjct: 27 ITVLNLTH-NQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 144 SGRIPPQIGHLSYIEALHL-----------------FKNQ---LSGPIPH---------- 173
S QI +++ +L FKNQ + + H
Sbjct: 86 S-----QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT 140
Query: 174 -------------------------EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 208
E G SSL +L L+SN LK P + L L
Sbjct: 141 GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFAL 200
Query: 209 YLHNNS----LSGSIPSEIGNLKSLSSLALGNNKLCG-SIPLFLG-NLTNLDTLYLRNNS 262
L+N L+ + E+ N S+ +L+L NN+L S F G TNL L L N+
Sbjct: 201 LLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNN 259
Query: 263 FSSSIPSEIGNLKSLSILELGENRLNGSIP-----LSXXXXXXXXXXXXXXXXXXGSIPS 317
L SL L L N + P LS S P+
Sbjct: 260 LHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPN 319
Query: 318 ----EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373
LK L L + DN + S+ + L +L YL SLS + S L++L
Sbjct: 320 IDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLK--YL---SLSKTFTS----LQTL 370
Query: 374 SN-------------LDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIP-REIGNLK 419
+N L+L++N +S + L L IL L N + + +E L+
Sbjct: 371 TNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLR 430
Query: 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVI--PEELGNLVKLTMLTLSDN 477
++FE+ L NK + S + + L L AL V P L LT+L LS+N
Sbjct: 431 NIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN 490
Query: 478 QL 479
+
Sbjct: 491 NI 492
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 30/124 (24%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEI---------- 367
IG+LK+L L +A N + S +P Y NLTNL L N + +++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 368 ---------------GNLKS--LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLG 409
G K L L L N+L S+P + LT+L ++LH+N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 240
Query: 410 SIPR 413
S PR
Sbjct: 241 SCPR 244
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 103 IGNISKLKYLDLSSNSF-SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 161
IG++ LK L+++ N S +P NL+ L+ L LS+N+ + L + L+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 162 LFKNQLSGPIPH-EVGGLSS--LNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSG 217
L + P+ + G L ELAL +N LK S+P + LT+L ++LH N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 240
Query: 218 SIP 220
S P
Sbjct: 241 SCP 243
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 28/189 (14%)
Query: 108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 167
+L+ LDLS +LS L L L+ N LS ++ L + L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEI--- 223
+ +G L +L EL + N ++ +P NLTNL L L +N + +++
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Query: 224 ----------------------GNLKS--LSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
G K L LAL N+L LT+L ++L
Sbjct: 175 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234
Query: 260 NNSFSSSIP 268
N + S P
Sbjct: 235 TNPWDCSCP 243
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 30/124 (24%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEI---------- 367
IG+LK+L L +A N + S +P Y NLTNL L N + +++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 368 ---------------GNLKS--LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLG 409
G K L L L N+L S+P + LT+L ++LH+N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 239
Query: 410 SIPR 413
S PR
Sbjct: 240 SCPR 243
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 103 IGNISKLKYLDLSSNSF-SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 161
IG++ LK L+++ N S +P NL+ L+ L LS+N+ + L + L+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 162 LFKNQLSGPIPH-EVGGLSS--LNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSG 217
L + P+ + G L ELAL +N LK S+P + LT+L ++LH N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 239
Query: 218 SIP 220
S P
Sbjct: 240 SCP 242
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 28/189 (14%)
Query: 108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 167
+L+ LDLS +LS L L L+ N LS ++ L + L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEI--- 223
+ +G L +L EL + N ++ +P NLTNL L L +N + +++
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
Query: 224 ----------------------GNLKS--LSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
G K L LAL N+L LT+L ++L
Sbjct: 174 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233
Query: 260 NNSFSSSIP 268
N + S P
Sbjct: 234 TNPWDCSCP 242
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE------------ 414
I L +++ L L+ NKL+ P L NL NL L+L N + +
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 415 --------IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
+ +L L L LG+NK+++ L LT + L+L DN +S ++P L L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGL 177
Query: 467 VKLTMLTLSDNQL 479
KL L LS N +
Sbjct: 178 TKLQNLYLSKNHI 190
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 133 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 286 RL 287
+
Sbjct: 189 HI 190
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE------------ 414
I L +++ L L+ NKL+ P L NL NL L+L N + +
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118
Query: 415 --------IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
+ +L L L LG+NK+++ L LT + L+L DN +S ++P L L
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGL 174
Query: 467 VKLTMLTLSDNQL 479
KL L LS N +
Sbjct: 175 TKLQNLYLSKNHI 187
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 130 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185
Query: 286 RL 287
+
Sbjct: 186 HI 187
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 30/124 (24%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEI---------- 367
IG+LK+L L +A N + S +P Y NLTNL L N + +++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 368 ---------------GNLKS--LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLG 409
G K L L L N+L S+P + LT+L ++LH+N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238
Query: 410 SIPR 413
S PR
Sbjct: 239 SCPR 242
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 103 IGNISKLKYLDLSSNSF-SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 161
IG++ LK L+++ N S +P NL+ L+ L LS+N+ + L + L+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 162 LFKNQLSGPIPH-EVGGLSS--LNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSG 217
L + P+ + G L ELAL +N LK S+P + LT+L ++LH N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238
Query: 218 SIP 220
S P
Sbjct: 239 SCP 241
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 30/190 (15%)
Query: 108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 167
+L+ LDLS +LS L L L+ N LS ++ L + L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEI--- 223
+ +G L +L EL + N ++ +P NLTNL L L +N + +++
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 224 ----------------------GNLKS--LSSLALGNNKLCGSIPL-FLGNLTNLDTLYL 258
G K L LAL N+L S+P LT+L ++L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWL 231
Query: 259 RNNSFSSSIP 268
N + S P
Sbjct: 232 HTNPWDCSCP 241
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 30/124 (24%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEI---------- 367
IG+LK+L L +A N + S +P Y NLTNL L N + +++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 368 ---------------GNLKS--LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLG 409
G K L L L N+L S+P + LT+L ++LH+N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 239
Query: 410 SIPR 413
S PR
Sbjct: 240 SCPR 243
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 103 IGNISKLKYLDLSSNSF-SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 161
IG++ LK L+++ N S +P NL+ L+ L LS+N+ + L + L+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 162 LFKNQLSGPIPH-EVGGLSS--LNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSG 217
L + P+ + G L ELAL +N LK S+P + LT+L ++LH N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 239
Query: 218 SIP 220
S P
Sbjct: 240 SCP 242
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 28/189 (14%)
Query: 108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 167
+L+ LDLS +LS L L L+ N LS ++ L + L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEI--- 223
+ +G L +L EL + N ++ +P NLTNL L L +N + +++
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
Query: 224 ----------------------GNLKS--LSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
G K L LAL N+L LT+L ++L
Sbjct: 174 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233
Query: 260 NNSFSSSIP 268
N + S P
Sbjct: 234 TNPWDCSCP 242
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN L L L NLDTL L+ NS +
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 187
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403
G L L L N L S+P L +L+ LD+S N+L+ +L L L LYL
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 404 SNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 458
N L P + L +L L +N L+ + L L ++ L L +N+L +
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 30/124 (24%)
Query: 319 IGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEI---------- 367
IG+LK+L L +A N + S +P Y NLTNL L N + +++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 368 ---------------GNLKS--LSNLDLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLG 409
G K L L L N+L S+P + LT+L ++LH+N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 240
Query: 410 SIPR 413
S PR
Sbjct: 241 SCPR 244
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 103 IGNISKLKYLDLSSNSF-SGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALH 161
IG++ LK L+++ N S +P NL+ L+ L LS+N+ + L + L+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 162 LFKNQLSGPIPH-EVGGLSS--LNELALTSNFLKGSIPPSL-GNLTNLAILYLHNNSLSG 217
L + P+ + G L ELAL +N LK S+P + LT+L ++LH N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 240
Query: 218 SIP 220
S P
Sbjct: 241 SCP 243
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 28/189 (14%)
Query: 108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQL 167
+L+ LDLS +LS L L L+ N LS ++ L + L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 168 SGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEI--- 223
+ +G L +L EL + N ++ +P NLTNL L L +N + +++
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Query: 224 ----------------------GNLKS--LSSLALGNNKLCGSIPLFLGNLTNLDTLYLR 259
G K L LAL N+L LT+L ++L
Sbjct: 175 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234
Query: 260 NNSFSSSIP 268
N + S P
Sbjct: 235 TNPWDCSCP 243
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G L + L L NQL +P L +L L ++ N L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265
N L P + L L+L NN L L L NLDTL L+ NS +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 128 GNLSMLKFLYLSANQFSGRIPPQIGH-LSYIEALHLFKNQLSGPIPHEVGGLSSLNELAL 186
G L +L L LS NQ P +G L + L + N+L+ + GL L EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 187 TSNFLKGSIPPSLGNLT-NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKL 239
N LK ++PP L T L L L NN+L+ + L++L +L L N L
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE------------ 414
I L +++ L L+ NKL+ P L NL NL L+L N + +
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 415 --------IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
+ +L L L LG+NK+++ L LT + L+L DN +S ++P L L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGL 177
Query: 467 VKLTMLTLSDNQL 479
KL L LS N +
Sbjct: 178 TKLQNLYLSKNHI 190
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 133 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 286 RL 287
+
Sbjct: 189 HI 190
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE------------ 414
I L +++ L L+ NKL+ P L NL NL L+L N + +
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 415 --------IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
+ +L L L LG+NK+++ L LT + L+L DN +S ++P L L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGL 175
Query: 467 VKLTMLTLSDNQL 479
KL L LS N +
Sbjct: 176 TKLQNLYLSKNHI 188
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 131 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 286 RL 287
+
Sbjct: 187 HI 188
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE------------ 414
I L +++ L L+ NKL+ P L NL NL L+L N + +
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 116
Query: 415 --------IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
+ +L L L LG+NK+++ L LT + L+L DN +S ++P L L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LACL 172
Query: 467 VKLTMLTLSDNQL 479
KL L LS N +
Sbjct: 173 TKLQNLYLSKNHI 185
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 128 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 286 RL 287
+
Sbjct: 184 HI 185
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 602 LPSELGSLIQ----LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL 657
L L SL Q ++ LDLS N LS L KL LNLS+N + + LE L
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESL 79
Query: 658 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695
L LDL++N++ ++ S+E L+ ++NN+S
Sbjct: 80 STLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 93 NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI- 151
N I I ++ L++LDLS N S LS L FL L N + +
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 152 GHLSYIEALHLFKNQLSGPIPH-EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
HL+ ++ L + I + GL+ L EL + ++ L+ P SL ++ N++ L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Query: 211 H 211
H
Sbjct: 206 H 206
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 624 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683
NSIP L VK L+LS N+ L++ ++L L L+ N + ++ S
Sbjct: 44 NSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDI 713
LE L+LS+N LS+ F+ ++ L ++++
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 111/278 (39%), Gaps = 23/278 (8%)
Query: 152 GHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
G +++L L N+++ ++ +L L LTSN + S +L +L L L
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 212 NNSLSGSIPSEIGNLKSLSSLALGNN--KLCGSIPLFLGNLTNLDTLYLRN-NSFSSSIP 268
N LS S L SL+ L L N K G LF +LT L L + N ++F+
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQR 167
Query: 269 SEIGNLKSLSILELGENRLNGSIPLSXXXXXXXXXXXXXXXXXXGSIPSEIGNLKSLSGL 328
+ L L LE+ + L P S + + S+ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227
Query: 329 ELADNELSSSIPHY----LGNLTNLAAFYLYKNSLSGSIPSE--------IGNLKSLSNL 376
EL D +L + H+ G +L + ++N I E + + L L
Sbjct: 228 ELRDTDLDTF--HFSELSTGETNSLIKKFTFRNV---KITDESLFQVMKLLNQISGLLEL 282
Query: 377 DLSENKLSGSIPHSL-GNLTNLAILYLHSNTLLGSIPR 413
+ S N+L S+P + LT+L ++LH+N S PR
Sbjct: 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 663 LDLSHNFLGK----EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718
LDLSHN L + P+++ N+ SL LSHN+L+ F + L Y+D+S N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 719 H 719
H
Sbjct: 101 H 101
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN 165
+ L+YLDLSSN +L L+ L L N ++ ++ L+L +N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 166 QLSGPIPHEV----GGLSSLNELALTSNFLKGSIPPSLGNLTNLAI-----LYLHNNSL 215
Q+S P E+ L L L L+SN LK +P L +L L LYLHNN L
Sbjct: 147 QISR-FPVELIKDGNKLPKLMLLDLSSNKLK-KLP--LTDLQKLPAWVKNGLYLHNNPL 201
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 363 IPSEIGNLKSLSNLDLSENKLSG----SIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL 418
+P + + +L LDLS N LS P L NL +L + + H N + + NL
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478
+ L L N L +L + +L LY+N + V ++ +L L LS NQ
Sbjct: 91 RYL---DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 479 L 479
+
Sbjct: 148 I 148
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 115/293 (39%), Gaps = 50/293 (17%)
Query: 74 FGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSML 133
FG HC H+ V +L +P +I + L LDL +N S L L
Sbjct: 29 FGCHC-HLRVVQCSDLG-----LKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHL 80
Query: 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG 193
L L N+ S L ++ L++ KN L IP + SSL EL + N ++
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRK 137
Query: 194 SIPPSLGNLTNLAILYLHNNSL--SGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLT 251
L N+ + + N L SG P LK L+ L + KL G IP L
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE-- 193
Query: 252 NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL----NGSIPLSXXXXXXXXXXXXX 307
L+ L+L +N + ++ L L LG N++ NGS+
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-------------- 239
Query: 308 XXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 360
L +L L L +N+LS +P L +L L YL+ N+++
Sbjct: 240 --------------LPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 354 LYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPR 413
L N +S + L+ L L L NK+S + L L LY+ N L+ IP
Sbjct: 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP 119
Query: 414 EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNAL--SGVIPEELGNLVKLTM 471
+ + SL EL++ DN++ L +M + + N L SG P L KL
Sbjct: 120 NLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176
Query: 472 LTLSDNQLQG 481
L +S+ +L G
Sbjct: 177 LRISEAKLTG 186
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 24/225 (10%)
Query: 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN-- 261
+ +L L NN +S + L+ L +L L NNK+ L L LY+ N
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 262 -SFSSSIPSEI------------------GNLKSLSILELGENRLNGSIPLSXXXXXXXX 302
++PS + L++++ +E+G N L S
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 303 XXXXXXXXXXGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS 362
IP ++ ++L+ L L N++ + L + L L N +
Sbjct: 175 NYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 363 IPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407
+ L +L L L NKLS +P L +L L ++YLH+N +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 93 NQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQI- 151
N I I ++ L++LDLS N S LS L FL L N + +
Sbjct: 60 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 119
Query: 152 GHLSYIEALHLFKNQLSGPIPH-EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210
HL+ ++ L + I + GL+ L EL + ++ L+ P SL ++ N++ L L
Sbjct: 120 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Query: 211 H 211
H
Sbjct: 180 H 180
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 624 NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683
NSIP L VK L+LS N+ L++ ++L L L+ N + ++ S
Sbjct: 18 NSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDI 713
LE L+LS+N LS+ F+ ++ L ++++
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR-IPPQIGHLSYIEALHLFKNQL 167
L++LDLS N S G LS LK+L L N + + +L+ ++ L + +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 168 SGPIPH-EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
I + GL+SLNEL + + L+ SL ++ ++ L LH
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR-IPPQIGHLSYIEALHLFKNQL 167
L++LDLS N S G LS LK+L L N + + +L+ ++ L + +
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 161
Query: 168 SGPIPH-EVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211
I + GL+SLNEL + + L+ SL ++ ++ L LH
Sbjct: 162 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 206
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 128 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 286 RL 287
+
Sbjct: 184 HI 185
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 418 LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
L L L LG+NK+++ L LT + L+L DN +S ++P L L KL L LS N
Sbjct: 128 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 478 QL 479
+
Sbjct: 184 HI 185
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 151 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 286 RL 287
+
Sbjct: 207 HI 208
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 418 LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
L L L LG+NK+++ L LT + L+L DN +S ++P L L KL L LS N
Sbjct: 151 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 478 QL 479
+
Sbjct: 207 HI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 151 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 286 RL 287
+
Sbjct: 207 HI 208
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 418 LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
L L L LG+NK+++ L LT + L+L DN +S ++P L L KL L LS N
Sbjct: 151 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 478 QL 479
+
Sbjct: 207 HI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N S +P + L L L L +N
Sbjct: 151 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 286 RL 287
+
Sbjct: 207 HI 208
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 418 LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477
L L L LG+NK+++ L LT + L+L DN +S ++P L L KL L LS N
Sbjct: 151 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 478 QL 479
+
Sbjct: 207 HI 208
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 26/133 (19%)
Query: 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPRE------------ 414
I L +++ L L+ NKL+ P L NL NL L+L N + +
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 415 --------IGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466
+ +L L L LG+NK+++ L LT + L+L DN + ++P L L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIRRIVP--LARL 175
Query: 467 VKLTMLTLSDNQL 479
KL L LS N +
Sbjct: 176 TKLQNLYLSKNHI 188
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 319 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDL 378
+ L L L L DN++ +P L LT L YL KN +S ++ L+ L NLD+
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHIS-----DLRALRGLKNLDV 202
Query: 379 SE 380
E
Sbjct: 203 LE 204
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285
L L SL LGNNK+ L LT LDTL L +N +P + L L L L +N
Sbjct: 131 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 286 RL 287
+
Sbjct: 187 HI 188
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG--SIPSEIGNLKSLSSLALG 235
++L EL L+ N + P L +LT L L ++ N L IPS LS L L
Sbjct: 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS-----ACLSRLFLD 114
Query: 236 NNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS 290
NN+L + L +L NL+ L +RNN S + +G L L +L+L N + +
Sbjct: 115 NNELRDTDSLI--HLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 654 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
LE+L+ ++ LDLSHN L + +P + +R LE+L S N L +
Sbjct: 459 LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN 500
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 654 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696
LE+L+ ++ LDLSHN L + +P + +R LE+L S N L +
Sbjct: 459 LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN 500
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 99 IPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIE 158
+P + L+ L L+ N +P I +L+ L+ + S R P++ L
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLR-------ELSIRACPELTELPEP- 169
Query: 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGS 218
L SG E GL +L L L ++ S+P S+ NL NL L + N+ LS
Sbjct: 170 ---LASTDASG----EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221
Query: 219 IPSEIGNLKSLSSL------ALGNN---------------KLCG---SIPLFLGNLTNLD 254
P+ I +L L L AL N K C ++PL + LT L+
Sbjct: 222 GPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 255 TLYLRNNSFSSSIPSEIGNLKSLSIL 280
L LR S +PS I L + I+
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCII 306
>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1267
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 149 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLS-SLNELALTSNFLKGSIPPSLGNLTNLAI 207
P + H + +SGP+P L S L S + +IPP L +L NLAI
Sbjct: 179 PDLSHNCPLWCFREICRHISGPLPDRAPYLYLSAGVFWLMSPRMTSAIPPLLSDLVNLAI 238
Query: 208 L 208
L
Sbjct: 239 L 239
>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
Formed
pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
Phosphodiester Bond Formed
pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
Cryomicroscopy Of Virions At 7.6-a Resolution
Length = 1267
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 149 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLS-SLNELALTSNFLKGSIPPSLGNLTNLAI 207
P + H + +SGP+P L S L S + +IPP L +L NLAI
Sbjct: 179 PDLSHNCPLWCFREICRHISGPLPDRAPYLYLSAGVFWLMSPRMTSAIPPLLSDLVNLAI 238
Query: 208 L 208
L
Sbjct: 239 L 239
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-L 654
+Q ++P ++ S + +DLS N L S N +L +L+LS + I+ I K
Sbjct: 20 DQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAW 76
Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLE------------------------MLNLS 690
L HLS L L+ N + P + SLE LN++
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 691 HNNL-SDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728
HN + S +P F + L+++D+SYN + N F
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIK-L 654
+Q ++P ++ S + +DLS N L S N +L +L+LS + I+ I K
Sbjct: 15 DQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAW 71
Query: 655 EKLIHLSELDLSHNFLGKEIPSQICNMRSLE------------------------MLNLS 690
L HLS L L+ N + P + SLE LN++
Sbjct: 72 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 691 HNNL-SDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728
HN + S +P F + L+++D+SYN + N F
Sbjct: 132 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 596 NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP--IK 653
NQL G+LP+ GS I+L L+L+ N+++ G ++ L+ + N+ ++ IP
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFD 397
Query: 654 LEKLIHLSELDLSHNFLG----------KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFE 703
+ + S +D S+N +G P + N+ S+ NLS+N +S F F
Sbjct: 398 AKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI---NLSNNQISKFPKELFS 454
Query: 704 EMNGLLYIDISYNEL 718
+ L I++ N L
Sbjct: 455 TGSPLSSINLXGNXL 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,823,778
Number of Sequences: 62578
Number of extensions: 839862
Number of successful extensions: 3297
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 860
length of query: 869
length of database: 14,973,337
effective HSP length: 107
effective length of query: 762
effective length of database: 8,277,491
effective search space: 6307448142
effective search space used: 6307448142
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)