Query 002896
Match_columns 869
No_of_seqs 975 out of 5763
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 12:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.6E-78 1.4E-82 745.7 48.3 591 34-753 27-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.6E-59 1.4E-63 576.1 37.8 497 203-725 69-566 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.9E-39 1.9E-43 333.0 6.6 375 350-726 81-459 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 2.7E-40 5.9E-45 330.2 -10.3 476 204-719 46-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 7.5E-38 1.6E-42 326.2 5.0 395 70-476 51-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 1.6E-40 3.5E-45 331.7 -17.3 490 133-671 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 7.3E-36 1.6E-40 328.2 -5.8 508 135-716 2-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.2E-35 4.7E-40 324.5 -6.4 485 159-717 2-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.6E-33 3.4E-38 295.4 -6.1 371 105-484 5-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 8.2E-32 1.8E-36 282.6 -2.5 386 128-521 4-393 (1255)
11 PLN03210 Resistant to P. syrin 99.9 4.9E-23 1.1E-27 255.5 26.2 364 82-478 532-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.6E-27 252.1 25.2 338 125-501 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.9E-24 8.4E-29 214.8 -2.7 407 229-668 69-498 (498)
14 KOG4237 Extracellular matrix p 99.9 5.8E-24 1.3E-28 213.5 -2.7 426 180-644 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 3.9E-20 8.5E-25 212.4 17.9 267 371-704 201-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.5E-19 3.2E-24 207.7 17.5 264 348-654 202-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.8E-19 8.3E-24 205.9 16.9 245 133-408 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.9E-18 1.1E-22 196.8 14.8 268 419-722 178-448 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-19 3.2E-24 195.6 -1.0 279 423-718 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.3E-19 1.8E-23 189.7 -1.9 276 399-694 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.8E-18 3.9E-23 154.3 -3.6 164 103-272 29-193 (264)
22 KOG0617 Ras suppressor protein 99.6 7.6E-18 1.7E-22 150.3 -4.6 164 127-296 29-193 (264)
23 PLN03150 hypothetical protein; 99.6 1.1E-14 2.4E-19 168.8 12.8 148 32-190 368-526 (623)
24 PLN03150 hypothetical protein; 99.5 1.5E-14 3.2E-19 167.8 11.7 117 636-753 420-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.1 2.6E-12 5.6E-17 136.2 -3.7 171 517-696 78-248 (722)
26 COG4886 Leucine-rich repeat (L 99.1 2.1E-10 4.5E-15 127.7 9.8 102 135-240 97-199 (394)
27 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.4E-15 129.9 6.6 198 111-317 97-295 (394)
28 KOG0532 Leucine-rich repeat (L 99.1 3.9E-12 8.5E-17 134.9 -5.1 174 106-288 74-247 (722)
29 KOG3207 Beta-tubulin folding c 99.0 2.7E-11 5.8E-16 124.9 -0.8 210 487-720 118-340 (505)
30 KOG1259 Nischarin, modulator o 99.0 8.4E-11 1.8E-15 115.0 0.8 133 585-723 283-416 (490)
31 KOG1909 Ran GTPase-activating 99.0 2.9E-11 6.4E-16 121.4 -2.7 184 536-719 90-311 (382)
32 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.6E-15 106.8 4.2 106 610-719 19-126 (175)
33 KOG4658 Apoptotic ATPase [Sign 99.0 6E-10 1.3E-14 132.0 5.9 131 105-238 521-653 (889)
34 KOG1909 Ran GTPase-activating 98.9 2.9E-11 6.2E-16 121.5 -5.0 247 103-360 26-311 (382)
35 KOG4658 Apoptotic ATPase [Sign 98.9 2.7E-10 5.9E-15 134.9 2.1 106 108-214 546-653 (889)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.5E-14 103.7 5.4 128 582-714 15-148 (175)
37 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3.1E-15 119.7 -1.2 208 272-502 118-338 (505)
38 KOG1259 Nischarin, modulator o 98.8 6.9E-10 1.5E-14 108.7 0.7 134 222-361 279-413 (490)
39 PF08263 LRRNT_2: Leucine rich 98.8 7.2E-09 1.6E-13 73.5 4.6 41 35-79 2-43 (43)
40 KOG0531 Protein phosphatase 1, 98.8 1.2E-09 2.6E-14 121.6 0.2 196 129-336 70-268 (414)
41 KOG0531 Protein phosphatase 1, 98.7 1.8E-09 3.9E-14 120.2 0.4 57 660-719 234-290 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 3.3E-09 7.2E-14 82.5 1.7 60 659-718 2-61 (61)
43 PF13855 LRR_8: Leucine rich r 98.7 6E-09 1.3E-13 81.1 1.6 60 635-694 2-61 (61)
44 KOG1859 Leucine-rich repeat pr 98.6 2.4E-09 5.2E-14 116.9 -4.5 129 586-720 164-293 (1096)
45 KOG1859 Leucine-rich repeat pr 98.4 1.4E-08 2.9E-13 111.2 -3.8 199 537-746 83-296 (1096)
46 KOG4579 Leucine-rich repeat (L 98.2 7.9E-08 1.7E-12 83.8 -2.4 84 611-696 54-137 (177)
47 KOG2982 Uncharacterized conser 98.1 6.1E-07 1.3E-11 88.5 0.8 63 323-385 199-263 (418)
48 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-07 2.5E-12 93.5 -5.1 85 515-599 186-273 (419)
49 KOG2982 Uncharacterized conser 98.0 2E-06 4.3E-11 85.0 1.9 81 634-714 199-287 (418)
50 KOG2120 SCF ubiquitin ligase, 97.9 1.5E-07 3.2E-12 92.8 -7.6 58 396-453 186-244 (419)
51 KOG4579 Leucine-rich repeat (L 97.9 1.5E-06 3.3E-11 75.9 -1.9 107 564-673 29-138 (177)
52 COG5238 RNA1 Ran GTPase-activa 97.8 1.1E-06 2.3E-11 85.7 -3.9 85 82-168 30-133 (388)
53 PRK15386 type III secretion pr 97.7 4.6E-05 9.9E-10 81.5 6.1 137 534-692 48-187 (426)
54 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.7E-10 54.9 3.0 37 659-696 2-38 (44)
55 PRK15386 type III secretion pr 97.7 0.00013 2.7E-09 78.2 8.6 15 466-480 51-65 (426)
56 COG5238 RNA1 Ran GTPase-activa 97.7 5.7E-06 1.2E-10 80.8 -1.4 40 463-502 88-132 (388)
57 PF12799 LRR_4: Leucine Rich r 97.5 7.4E-05 1.6E-09 53.0 2.8 36 635-671 2-37 (44)
58 KOG1644 U2-associated snRNP A' 97.4 0.00021 4.6E-09 67.3 4.9 106 609-716 41-150 (233)
59 KOG3665 ZYG-1-like serine/thre 97.4 7.2E-05 1.6E-09 87.1 2.1 106 131-238 122-231 (699)
60 KOG3665 ZYG-1-like serine/thre 97.3 7.6E-05 1.6E-09 87.0 1.1 111 585-697 147-265 (699)
61 PF13306 LRR_5: Leucine rich r 97.2 0.00089 1.9E-08 61.1 6.6 14 533-546 30-43 (129)
62 PF13306 LRR_5: Leucine rich r 97.1 0.00058 1.3E-08 62.4 5.0 100 604-708 29-128 (129)
63 KOG1644 U2-associated snRNP A' 97.1 0.001 2.2E-08 62.8 5.7 100 422-523 45-149 (233)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00074 1.6E-08 66.6 2.9 102 610-713 43-150 (260)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00075 1.6E-08 66.6 2.1 71 96-168 32-104 (260)
66 KOG4341 F-box protein containi 96.7 4.6E-05 9.9E-10 79.3 -6.8 106 300-405 139-252 (483)
67 KOG4341 F-box protein containi 96.7 9.9E-05 2.2E-09 76.9 -4.8 38 657-694 400-438 (483)
68 KOG2123 Uncharacterized conser 96.1 0.0012 2.5E-08 65.4 -0.8 100 609-712 18-123 (388)
69 KOG1947 Leucine rich repeat pr 96.0 0.00058 1.3E-08 78.4 -3.9 35 130-164 187-223 (482)
70 KOG2123 Uncharacterized conser 95.5 0.0015 3.3E-08 64.5 -2.7 56 539-598 20-75 (388)
71 KOG4308 LRR-containing protein 95.1 0.00059 1.3E-08 76.1 -7.8 87 633-719 203-303 (478)
72 KOG1947 Leucine rich repeat pr 94.9 0.0016 3.4E-08 74.8 -5.4 35 397-431 403-439 (482)
73 KOG4308 LRR-containing protein 94.7 0.00057 1.2E-08 76.3 -9.3 188 491-698 88-306 (478)
74 PF00560 LRR_1: Leucine Rich R 94.4 0.0096 2.1E-07 35.0 -0.3 12 133-144 2-13 (22)
75 PF00560 LRR_1: Leucine Rich R 94.2 0.016 3.4E-07 34.1 0.3 9 662-670 4-12 (22)
76 PF01582 TIR: TIR domain; Int 91.8 0.017 3.7E-07 53.5 -3.1 49 818-866 1-70 (141)
77 KOG0473 Leucine-rich repeat pr 91.3 0.0068 1.5E-07 58.5 -6.2 88 102-192 37-124 (326)
78 smart00370 LRR Leucine-rich re 89.6 0.32 6.9E-06 29.8 2.2 23 681-703 1-23 (26)
79 smart00369 LRR_TYP Leucine-ric 89.6 0.32 6.9E-06 29.8 2.2 23 681-703 1-23 (26)
80 KOG0473 Leucine-rich repeat pr 88.6 0.025 5.4E-07 54.7 -4.8 86 607-695 39-124 (326)
81 PF13504 LRR_7: Leucine rich r 86.0 0.42 9.1E-06 26.0 1.0 12 683-694 2-13 (17)
82 KOG1187 Serine/threonine prote 82.7 0.38 8.3E-06 52.3 -0.1 52 818-869 63-134 (361)
83 smart00370 LRR Leucine-rich re 82.3 1.2 2.6E-05 27.2 2.1 15 634-648 2-16 (26)
84 smart00369 LRR_TYP Leucine-ric 82.3 1.2 2.6E-05 27.2 2.1 15 634-648 2-16 (26)
85 PF13516 LRR_6: Leucine Rich r 80.2 0.52 1.1E-05 28.2 -0.1 12 635-646 3-14 (24)
86 KOG3864 Uncharacterized conser 76.6 0.62 1.4E-05 44.6 -0.7 34 612-645 103-136 (221)
87 KOG3864 Uncharacterized conser 74.5 0.56 1.2E-05 45.0 -1.6 81 515-595 102-185 (221)
88 PF15102 TMEM154: TMEM154 prot 73.9 2.3 5E-05 38.4 2.1 8 766-773 58-65 (146)
89 TIGR00864 PCC polycystin catio 73.6 2.3 5E-05 56.3 2.9 39 688-726 1-39 (2740)
90 PF08693 SKG6: Transmembrane a 72.9 2.2 4.8E-05 29.1 1.4 8 767-774 15-22 (40)
91 PF01102 Glycophorin_A: Glycop 70.4 2.7 5.8E-05 37.2 1.7 29 766-795 66-94 (122)
92 PF02439 Adeno_E3_CR2: Adenovi 68.8 6.6 0.00014 26.3 2.8 9 768-776 7-15 (38)
93 PF04478 Mid2: Mid2 like cell 68.0 1.9 4.1E-05 39.2 0.3 15 763-777 48-62 (154)
94 smart00365 LRR_SD22 Leucine-ri 65.6 5.2 0.00011 24.6 1.8 15 682-696 2-16 (26)
95 TIGR01478 STEVOR variant surfa 62.8 7.9 0.00017 39.2 3.5 13 784-796 277-289 (295)
96 PTZ00370 STEVOR; Provisional 62.6 7.9 0.00017 39.2 3.5 11 785-795 274-284 (296)
97 PTZ00382 Variant-specific surf 61.7 7.1 0.00015 33.1 2.6 10 764-773 66-75 (96)
98 KOG4242 Predicted myosin-I-bin 60.6 36 0.00079 37.4 8.1 58 660-717 415-479 (553)
99 smart00368 LRR_RI Leucine rich 57.1 9.1 0.0002 23.9 1.9 15 682-696 2-16 (28)
100 PF15050 SCIMP: SCIMP protein 57.1 6.7 0.00014 33.7 1.6 12 819-830 93-104 (133)
101 KOG4242 Predicted myosin-I-bin 56.3 37 0.00081 37.3 7.3 105 614-718 333-452 (553)
102 PF12191 stn_TNFRSF12A: Tumour 52.7 5.8 0.00013 34.6 0.6 13 742-754 54-66 (129)
103 smart00255 TIR Toll - interleu 52.1 3.7 8.1E-05 37.6 -0.7 51 815-866 1-70 (140)
104 PF14575 EphA2_TM: Ephrin type 51.8 8.4 0.00018 30.9 1.4 20 814-833 51-70 (75)
105 smart00364 LRR_BAC Leucine-ric 49.7 12 0.00026 23.0 1.4 14 683-696 3-16 (26)
106 KOG3653 Transforming growth fa 45.2 25 0.00055 38.5 4.0 27 843-869 234-267 (534)
107 PF06365 CD34_antigen: CD34/Po 43.8 46 0.00099 32.4 5.2 10 784-793 120-129 (202)
108 PF02009 Rifin_STEVOR: Rifin/s 42.6 22 0.00048 37.1 3.1 8 770-777 262-269 (299)
109 PF08114 PMP1_2: ATPase proteo 42.6 32 0.00069 23.5 2.7 6 787-792 28-33 (43)
110 PF01034 Syndecan: Syndecan do 41.2 8.9 0.00019 29.2 0.0 10 786-795 30-39 (64)
111 PF08374 Protocadherin: Protoc 41.2 40 0.00086 32.8 4.2 16 762-777 36-51 (221)
112 KOG3763 mRNA export factor TAP 36.2 22 0.00048 39.8 2.0 64 608-671 216-283 (585)
113 PF12273 RCR: Chitin synthesis 33.0 36 0.00078 30.8 2.6 9 789-797 20-28 (130)
114 PF14610 DUF4448: Protein of u 30.9 29 0.00063 33.8 1.7 15 763-777 156-170 (189)
115 KOG3763 mRNA export factor TAP 29.2 30 0.00065 38.8 1.6 62 584-647 216-283 (585)
116 KOG1219 Uncharacterized conser 27.3 92 0.002 41.4 5.3 28 698-725 3904-3931(4289)
117 smart00367 LRR_CC Leucine-rich 25.8 41 0.00088 20.4 1.1 12 131-142 2-13 (26)
118 PF12877 DUF3827: Domain of un 24.6 1E+02 0.0022 35.4 4.6 11 763-773 267-277 (684)
119 PF05393 Hum_adeno_E3A: Human 24.2 1.1E+02 0.0023 25.1 3.4 10 784-793 49-58 (94)
120 KOG2052 Activin A type IB rece 24.2 29 0.00064 37.8 0.4 26 843-868 235-267 (513)
121 TIGR00864 PCC polycystin catio 23.5 53 0.0011 44.6 2.6 32 640-671 1-32 (2740)
122 PHA03265 envelope glycoprotein 23.2 91 0.002 32.7 3.6 11 784-794 366-376 (402)
123 PF08374 Protocadherin: Protoc 21.7 62 0.0013 31.5 2.0 27 763-789 34-60 (221)
124 PF15069 FAM163: FAM163 family 21.1 1.2E+02 0.0025 27.6 3.4 20 769-788 8-27 (143)
125 PF03302 VSP: Giardia variant- 21.0 67 0.0015 35.4 2.5 17 760-776 363-379 (397)
126 PF12768 Rax2: Cortical protei 20.8 2.1E+02 0.0046 29.8 5.9 14 763-776 226-239 (281)
127 PF14991 MLANA: Protein melan- 20.4 28 0.0006 29.9 -0.5 8 784-791 42-49 (118)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.6e-78 Score=745.70 Aligned_cols=591 Identities=41% Similarity=0.636 Sum_probs=436.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEe
Q 002896 34 STEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLD 113 (869)
Q Consensus 34 ~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~ 113 (869)
.++|++||++||+++.+ | .+.+.+|+ ...+||.|.||+|+..++|+.++|++.+ +.|.+++.+..+++|++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~-~-~~~~~~w~----~~~~~c~w~gv~c~~~~~v~~L~L~~~~-i~~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSIND-P-LKYLSNWN----SSADVCLWQGITCNNSSRVVSIDLSGKN-ISGKISSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCC-C-cccCCCCC----CCCCCCcCcceecCCCCcEEEEEecCCC-ccccCChHHhCCCCCCEEE
Confidence 56899999999999964 5 56789997 5678999999999988899999999988 9999999999999999999
Q ss_pred CCCCCCCCCCCCCCC-CCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccC
Q 002896 114 LSSNSFSGTIPPQIG-NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLK 192 (869)
Q Consensus 114 Ls~n~~~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 192 (869)
|++|.++|.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus 100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred CCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 999999998887755 899999999999999988885 56888999999999998888888888888999988888888
Q ss_pred CCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCC
Q 002896 193 GSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIG 272 (869)
Q Consensus 193 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 272 (869)
+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 88888888888888888888888888888888888888888888888777777777777777777777777777777777
Q ss_pred CCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCcccccee
Q 002896 273 NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAF 352 (869)
Q Consensus 273 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 352 (869)
++++|++|++++|++.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 77777777777777766666666666666666666666666666666666666666666666665555555555555555
Q ss_pred eccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCc
Q 002896 353 YLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLS 432 (869)
Q Consensus 353 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 432 (869)
++++|.+.+.+|..++.+++|+.|++++| .+.+.+|..+..+++|+.|++++|.+.
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n------------------------~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTN------------------------NLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCC------------------------eeEeeCChhHhCcCCCCEEECcCCEec
Confidence 55555555555554444455555555544 444444545555555555555555555
Q ss_pred ccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccC
Q 002896 433 NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGI 512 (869)
Q Consensus 433 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 512 (869)
+.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l--------------------------------- 440 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL--------------------------------- 440 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc---------------------------------
Confidence 55555555666666666666665555444333333222222222222
Q ss_pred CCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceee
Q 002896 513 HPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLI 592 (869)
Q Consensus 513 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 592 (869)
++.++ ..+..+++|+.|++++|++.+.+|..+
T Consensus 441 --------------~~~~~------------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~---------- 472 (968)
T PLN00113 441 --------------QGRIN------------------------SRKWDMPSLQMLSLARNKFFGGLPDSF---------- 472 (968)
T ss_pred --------------cCccC------------------------hhhccCCCCcEEECcCceeeeecCccc----------
Confidence 22111 112222333333444444333333221
Q ss_pred ccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCC
Q 002896 593 LRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 672 (869)
Q Consensus 593 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 672 (869)
..++|+.|++++|++++..|..+.++++|+.|+|++|++.+.+|..+.++++|++|+|++|.+++
T Consensus 473 ---------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 537 (968)
T PLN00113 473 ---------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537 (968)
T ss_pred ---------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc
Confidence 12355666666666666677777777888888888888888888888888999999999999999
Q ss_pred chhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCCCCC--CCC
Q 002896 673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIK--GFQ 750 (869)
Q Consensus 673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~~--~~~ 750 (869)
.+|..+..+++|+.|||++|++++.+|..+..+++|+++++++|++.|.+|..++|..+...++.||+.+||..+ ...
T Consensus 538 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~ 617 (968)
T PLN00113 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLP 617 (968)
T ss_pred cCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998632 234
Q ss_pred CCC
Q 002896 751 SCK 753 (869)
Q Consensus 751 ~C~ 753 (869)
+|.
T Consensus 618 ~c~ 620 (968)
T PLN00113 618 PCK 620 (968)
T ss_pred CCc
Confidence 564
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.6e-59 Score=576.12 Aligned_cols=497 Identities=39% Similarity=0.579 Sum_probs=392.0
Q ss_pred cccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccC-CCCCCCEEEccCCCCCCCCCCCCCCCccCCccc
Q 002896 203 TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG-NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 281 (869)
Q Consensus 203 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 281 (869)
.+++.|++++|.+++.++..+..+++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4677888888888888887788888888888888888777776654 778888888888888777664 4467777777
Q ss_pred cCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCC
Q 002896 282 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 361 (869)
Q Consensus 282 L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 361 (869)
+++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 77777777777777777777777777777777777777777777777777777776667667777777777777777766
Q ss_pred CCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccC
Q 002896 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441 (869)
Q Consensus 362 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 441 (869)
.+|..++.+++|++|++++|.+++..|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 66666666667777777666666666666666666666666666666666666666666666666666665555555555
Q ss_pred CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL 521 (869)
Q Consensus 442 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 521 (869)
+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~-----------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVA-----------------------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred CCCCcEEECCCCccCCcCChh-----------------------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 555555555555555555544 444555555556666666666666777777888888
Q ss_pred CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCcccccc
Q 002896 522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ 601 (869)
Q Consensus 522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 601 (869)
++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 88888877787777788888888888888888888888888999999999999888888888999999999999999998
Q ss_pred CcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCC
Q 002896 602 LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 681 (869)
Q Consensus 602 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 681 (869)
+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++.+.+|..+.++++|+.|+|++|.+.+.+|+.+..+
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 88888899999999999999999888766 45899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 682 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
++|++|+|++|.+++.+|..|..+++|+.||+++|+++|.+|..
T Consensus 523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 99999999999999999999999999999999999999999964
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-39 Score=333.04 Aligned_cols=375 Identities=23% Similarity=0.229 Sum_probs=275.9
Q ss_pred ceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCC
Q 002896 350 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDN 429 (869)
Q Consensus 350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 429 (869)
+.|++++|.+...-+..|.++++|+++.+..|.++ .+|...+...+|+.|+|.+|.+...-.+.++.++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34555555555555555555555555555555555 34443334444666666666665555555666666666666666
Q ss_pred cCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCc
Q 002896 430 KLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISE 508 (869)
Q Consensus 430 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 508 (869)
.++......|..-.++++|+|++|.++....+.|.++.+|..|.|+.|+++...+ .|.+++.|+.|++..|.+...-.-
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 6665555555555666666666666666666666666666666666666665444 556666666666666666655555
Q ss_pred cccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCccc
Q 002896 509 SFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSL 588 (869)
Q Consensus 509 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 588 (869)
.|.++++|+.|.+..|.++..-...|-.|.++++|+|+.|++...-..++.+++.|+.|++|+|.|...-++....+++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 67777777777777777766666667777777777777777776666777888888888888888887777778888888
Q ss_pred ceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccch---hhhcccccccccc
Q 002896 589 IKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI---KLEKLIHLSELDL 665 (869)
Q Consensus 589 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 665 (869)
++|+|++|.++...+..|..++.|++|+|++|.+...-..+|..+++|++|||++|.++..|.+ .|.++++|+.|+|
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 8888888888888888888899999999999999887778889999999999999998876643 4788999999999
Q ss_pred cccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896 666 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726 (869)
Q Consensus 666 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~ 726 (869)
.+|++..+...+|.++++||.|||.+|.|..+-|+.|..+ .|+.|-+..-.|-|.|.-.|
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 9999977777899999999999999999999999999998 89999999888888887544
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.7e-40 Score=330.16 Aligned_cols=476 Identities=32% Similarity=0.474 Sum_probs=292.4
Q ss_pred ccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccC
Q 002896 204 NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELG 283 (869)
Q Consensus 204 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 283 (869)
.|+.+.+++|.+... -..+.++..|.+|++.+|++. ..|.+++.+..++.++.++|+++ .+|..+..+.+|+.++++
T Consensus 46 ~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 455555666655522 223455555555555555554 44445555555555555555554 445555555555555555
Q ss_pred cccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCC
Q 002896 284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSI 363 (869)
Q Consensus 284 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 363 (869)
+|.+. ..|+.++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|..+.
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~------------------- 181 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA------------------- 181 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-------------------
Confidence 55554 34444555555555555555554 3444444555555555555554433333322
Q ss_pred ccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCC
Q 002896 364 PSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLT 443 (869)
Q Consensus 364 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 443 (869)
++.|++||...|.+. .+|..++.+.+|+.|++..|++. .+| .|.+|..|++++++.|++.-.......+++
T Consensus 182 ------m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 182 ------MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN 252 (565)
T ss_pred ------HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence 444444444444443 44445555555555555555554 333 455555555555555555443333334555
Q ss_pred CCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCC--CCCEEe-
Q 002896 444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHP--KLTFID- 520 (869)
Q Consensus 444 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~- 520 (869)
++..||+.+|+++ ..|+.+.-+.+|++||+++|.+++..+.++++ .|+.|-+.+|++..+-.+.+..-+ -|++|.
T Consensus 253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred cceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 5555555555554 34555555556666666666666555566666 666666666655322111110000 001000
Q ss_pred ------CCCC---cc-ccc-CC---cCcCCCCCCcEEEccCCCCCCCCCcCcCCC---CCCCEEEccCCcccccCCcccc
Q 002896 521 ------LSHN---NF-YGQ-IS---SDWGKCPNLGTFDVSVNNIIGSLPPEIGDS---SQLHVIDLSANHIIGKIPSEIG 583 (869)
Q Consensus 521 ------ls~n---~l-~~~-~~---~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~l~ 583 (869)
++.. .- .+. .+ .......+.+.|++++-+++ .+|...... .-....+++.|++. .+|..+.
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~ 408 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV 408 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH
Confidence 0000 00 000 01 11223456677777777776 455443322 23778999999987 6788888
Q ss_pred cCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccc
Q 002896 584 KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSEL 663 (869)
Q Consensus 584 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 663 (869)
.++.+.+.-+.+|+..+-+|..++.+++|..|+|++|.+. .+|..++.+..|+.||+|.|++ ..+|..+..+..|+.+
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtl 486 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETL 486 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHH
Confidence 8888877666666666788888999999999999999887 6788999999999999999987 6788888888889988
Q ss_pred cccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCccc
Q 002896 664 DLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 664 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 719 (869)
-.++|++....|+.+.+|.+|..|||.+|.+.. +|..++++++|++|++++|||.
T Consensus 487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 888999988888889999999999999999987 6788999999999999999998
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-38 Score=326.18 Aligned_cols=395 Identities=25% Similarity=0.292 Sum_probs=294.7
Q ss_pred CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc
Q 002896 70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP 149 (869)
Q Consensus 70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~ 149 (869)
+|.-.-..|+. .++.+++-+. +.|.+|+ .-+.||+++|.++..-+..|.++++|+.+++.+|.++ .||.
T Consensus 51 ~c~~~lldcs~-~~lea~~~~~---l~g~lp~------~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~ 119 (873)
T KOG4194|consen 51 PCNTRLLDCSD-RELEAIDKSR---LKGFLPS------QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR 119 (873)
T ss_pred CCCceeeecCc-cccccccccc---cCCcCcc------ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc
Confidence 35444455642 3344443322 5666664 4577999999998877888899999999999999887 7887
Q ss_pred ccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCC
Q 002896 150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSL 229 (869)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 229 (869)
..+-..+|+.|+|.+|.++..-.+.+..++.|+.|||+.|.|+.....+|..-.++++|+|++|.|+......|..+.+|
T Consensus 120 f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 120 FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 77777789999999998887666778888888888888888887766777777788888888888887777778888888
Q ss_pred CEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccc
Q 002896 230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 309 (869)
Q Consensus 230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n 309 (869)
..|.|+.|+++...+..|.++++|+.|+|..|++.-.---.|..+++|+.|.+..|.+...-...|..+.++++|+|..|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 88888888888666677777888888888888776433445777788888888888877666667777778888888888
Q ss_pred cccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCC
Q 002896 310 SLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPH 389 (869)
Q Consensus 310 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 389 (869)
+++..-..|+.+++.|+.|++++|.+...-++.+...++|++|+|++|+++...+..|..+..|++|.|+.|.++.....
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence 77766667777777777777777777777777777777777777777777776667777777777777777777766666
Q ss_pred CCCCCCcccEEEccCCccccccC---hhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCC
Q 002896 390 SLGNLTNLAILYLHSNTLLGSIP---REIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNL 466 (869)
Q Consensus 390 ~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 466 (869)
+|..+++|+.|+|++|.+...+. ..|.++++|+.|++.+|++..+...+|.+++.|+.|+|.+|.+..+-|.+|..+
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 67777777777777777765543 345667777777777777777666777777777777777777777777777766
Q ss_pred CCCcEEecCC
Q 002896 467 VKLTMLTLSD 476 (869)
Q Consensus 467 ~~L~~L~Ls~ 476 (869)
.|++|.+..
T Consensus 440 -~Lk~Lv~nS 448 (873)
T KOG4194|consen 440 -ELKELVMNS 448 (873)
T ss_pred -hhhhhhhcc
Confidence 666666543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-40 Score=331.74 Aligned_cols=490 Identities=31% Similarity=0.422 Sum_probs=288.1
Q ss_pred CCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccc
Q 002896 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212 (869)
Q Consensus 133 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 212 (869)
|+.|++++|.+. .+-+.+.++..|.+|++.+|+++ ..|++++.+..++.++.++|+++ .+|+.++.+.+|+.++.++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 444444444444 23334444555555555555544 34445555555555555555544 3444455555555555555
Q ss_pred cCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccC
Q 002896 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292 (869)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p 292 (869)
|.+. .+|++++.+..|+.++..+|+++ ..|..+..+.+|..+++.+|.+....| ..-+++.|++||...|-+. .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHHHHHHHhcccchhhhh-cCC
Confidence 5554 34445555555666666666555 445555556666666666666653333 3333666666666666554 566
Q ss_pred ccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCC
Q 002896 293 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372 (869)
Q Consensus 293 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 372 (869)
..++.+.+|+.|++..|++. .+| .|.+|..|+++.++.|++..........++++..||+.+|++. ..|..+.-+.+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 66666667777777777665 444 5666666777776666665433334446666777777777666 55666666677
Q ss_pred CCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCC---CCccccCCCcCcccccccccCCCCCCeEE
Q 002896 373 LSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS---LFELQLGDNKLSNSISHSLGNLTHMTLLA 449 (869)
Q Consensus 373 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 449 (869)
|++||+++|.++ ..|.+++++ .|+.|.+.+|++... -..+-.+.. |++|.= .+.. +.+
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs---~~~~---dgl---------- 337 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRS---KIKD---DGL---------- 337 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHH---hhcc---CCC----------
Confidence 777777777776 355566776 677777777766421 111111111 112110 0000 000
Q ss_pred ccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCC--CCCEEeCCCCccc
Q 002896 450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHP--KLTFIDLSHNNFY 527 (869)
Q Consensus 450 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~ls~n~l~ 527 (869)
+.. -.+.... .....+..|......+.+.|++++-+++..+.+.|.... -....+++.|++.
T Consensus 338 -S~s-e~~~e~~--------------~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 338 -SQS-EGGTETA--------------MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred -CCC-ccccccc--------------CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence 000 0000000 000011222333444556666666666655555553322 3566777777776
Q ss_pred ccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCccccc
Q 002896 528 GQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607 (869)
Q Consensus 528 ~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 607 (869)
.+|..+..+..+++.-+..|+..+.+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|.|. ..|..+.
T Consensus 402 -elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y 478 (565)
T KOG0472|consen 402 -ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY 478 (565)
T ss_pred -hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh
Confidence 45555555555554444445555577777888888888888877665 67778888888888888888664 5677777
Q ss_pred CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccC
Q 002896 608 SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 671 (869)
Q Consensus 608 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 671 (869)
.+..++.+-.++|++....|+.+.++.+|+.|||.+|.+ ..+|..++++++|++|++++|.+.
T Consensus 479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence 777777777788888877676788888888888888887 567778888888888888888885
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-36 Score=328.20 Aligned_cols=508 Identities=30% Similarity=0.348 Sum_probs=286.7
Q ss_pred cccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccC
Q 002896 135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS 214 (869)
Q Consensus 135 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 214 (869)
.+|++.+.+. .||..+-.-..++.|++..|.+....-+.+.+.-+|+.|+++.|++. ..|..+..+.+|+.|+++.|.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 3567777766 67776655555888888888766443344555666888888877765 556667777777777777777
Q ss_pred CCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCcc
Q 002896 215 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLS 294 (869)
Q Consensus 215 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~ 294 (869)
+. ..|.+..++.+|+++.|.+|.+. ..|..+..+++|++|++++|.+. .+|..+..++.++.+..++|.....
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence 76 45666777777777777777766 66777777777777777777765 6666677777777777777722211
Q ss_pred ccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCC
Q 002896 295 LGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLS 374 (869)
Q Consensus 295 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 374 (869)
++... ++.+++..|.+.+.++..+..+.. .|+|.+|.+. . ..+..+++|+.+....|++.... ..-++|+
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~ 222 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLT 222 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchh
Confidence 11112 666666666666666655555554 5677766665 1 23445556666666666554221 1224556
Q ss_pred EEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCC
Q 002896 375 NLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 454 (869)
Q Consensus 375 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 454 (869)
.|+.+.|.++...+.. .-.+|+++++++|+++ .+|+++..+.+|+.++..+|.++
T Consensus 223 ~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~---------------------- 277 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV---------------------- 277 (1081)
T ss_pred eeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH----------------------
Confidence 6666666555222211 1134555555555555 33455555555555555555552
Q ss_pred CcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCC-CCEEeCCCCcccccCCcC
Q 002896 455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPK-LTFIDLSHNNFYGQISSD 533 (869)
Q Consensus 455 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~ 533 (869)
.+|..+....+|+.|.+..|.+....+.....++|+.|++..|++....+..+..... |..++.+.|.+.......
T Consensus 278 ---~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 278 ---ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred ---hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 2333344444444444444444444444455555555666555554433333332222 455555555544322111
Q ss_pred cCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccc
Q 002896 534 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE 613 (869)
Q Consensus 534 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 613 (869)
=...+.|+.|.+.+|.++...-+.+.+.++|++|+|++|++ .......+.++..|+
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL------------------------~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL------------------------NSFPASKLRKLEELE 410 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc------------------------ccCCHHHHhchHHhH
Confidence 12233445555555555544444444444444444444444 433334445556666
Q ss_pred ccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCC
Q 002896 614 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNN 693 (869)
Q Consensus 614 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 693 (869)
+|+||+|+++ .+|.++..+..|++|..-+|++. ..| ++.++++|+.+|+|.|.++...-..-..-++|++||+++|.
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 6666666665 44556666666666666666653 233 56666666666666666654332221222677777777776
Q ss_pred CCCCcchhhhcCCCCcEEEccCC
Q 002896 694 LSDFIPRCFEEMNGLLYIDISYN 716 (869)
Q Consensus 694 l~~~~p~~l~~l~~L~~L~ls~N 716 (869)
-....-..|..+.++..+++.-|
T Consensus 488 ~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 488 RLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccccchhhhHHhhhhhheecccC
Confidence 54444556666666666666665
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-35 Score=324.48 Aligned_cols=485 Identities=29% Similarity=0.329 Sum_probs=302.1
Q ss_pred EEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCc
Q 002896 159 ALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238 (869)
Q Consensus 159 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 238 (869)
++|++.+.++ .||..+-.-..++.|++..|.+-...-+...+.-+|+.|++++|++. ..|..+..+..|+.|+++.|.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 3566666666 66666655555777777777665433333444445666666666665 455556666666666666666
Q ss_pred CCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCc
Q 002896 239 LCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSE 318 (869)
Q Consensus 239 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~ 318 (869)
+. ..|....++.+|+++.|..|.+. ..|..+..+++|+.|++++|++. .+|..+..++.++.+..++|......
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~l--- 153 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRL--- 153 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhh---
Confidence 55 44555556666666666655554 45555555666666666666554 45555555555555555555211111
Q ss_pred ccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCccc
Q 002896 319 IGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLA 398 (869)
Q Consensus 319 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 398 (869)
+. .. ++.+++..|.+.+.++.++..+.. .|++.+|.+. . ..+..+++|+
T Consensus 154 -g~------------------------~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~ 202 (1081)
T KOG0618|consen 154 -GQ------------------------TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLE 202 (1081)
T ss_pred -cc------------------------cc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchh
Confidence 11 11 444444445444444444444433 4555555544 1 1234455555
Q ss_pred EEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCc
Q 002896 399 ILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQ 478 (869)
Q Consensus 399 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 478 (869)
.+....|++.... -.-++|+.|+.++|.++..... ..-.+|++++++.|++++. |.++..+.+|+.++..+|+
T Consensus 203 ~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 203 VLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcc-hHHHHhcccceEecccchh
Confidence 5555555554221 1224566666666666522221 2234677777777777754 4777777777777777777
Q ss_pred CcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCc
Q 002896 479 LQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI 558 (869)
Q Consensus 479 l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 558 (869)
+..........++|+.|.+..|.+.. +|........|++|++..|++....+..+
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~y-------------------------ip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEY-------------------------IPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhh-------------------------CCCcccccceeeeeeehhccccccchHHH
Confidence 64433344445555555555555443 33334445555555555555542222222
Q ss_pred CCCC-CCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCC
Q 002896 559 GDSS-QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH 637 (869)
Q Consensus 559 ~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 637 (869)
.-.. .|..|+.+.|++....-..=..++.|+.|++.+|.++...-..+.+...|+.|+|++|++.......+.++..|+
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 2222 255666666666533222223478899999999999988888888999999999999999866667889999999
Q ss_pred eeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCc
Q 002896 638 YLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 717 (869)
Q Consensus 638 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 717 (869)
.|+||+|+++ .+|..+..+..|++|...+|++ ...| .+..++.|+.+|+|.|+|+...-..-..-+.|++||+++|.
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999999985 4679999999999999999999 5566 78999999999999999997643333333899999999997
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.6e-33 Score=295.44 Aligned_cols=371 Identities=29% Similarity=0.442 Sum_probs=254.7
Q ss_pred CCCCCcEEeCCCCCCCC-CCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896 105 NISKLKYLDLSSNSFSG-TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183 (869)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (869)
-|+..|-.|+++|.|+| .+|.....+++++.|.|....+. .+|..++.|.+|++|.+++|++. .+-..+..++.||.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 34566677777777774 37777777777777777777766 67777777777777777777766 33345666777777
Q ss_pred eeccCcccCC-CCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896 184 LALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262 (869)
Q Consensus 184 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (869)
+.+..|++.. -+|..+..+..|..|||++|++. +.|..+..-+++-+|+|++|++..+....+-+++.|-.|+|++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 7777777643 45666777777777777777776 567677777777777777777764333345567777777777777
Q ss_pred CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccccc-CCCCCcccCCCCCCeEeccCCccccccCC
Q 002896 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS-GSIPSEIGNLKSLSGLELADNELSSSIPH 341 (869)
Q Consensus 263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 341 (869)
+. .+|+.+..+..|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|.
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 76 55666777777777777777664332233344566667777665433 346667777777777777777776 5566
Q ss_pred CCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccc-cccChhhhCCCC
Q 002896 342 YLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLL-GSIPREIGNLKS 420 (869)
Q Consensus 342 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 420 (869)
.+.++++|+.|+|++|.++. +....+...+|++|+++.|+++ .+|++++.++.|+.|++.+|++. .-+|..++.+..
T Consensus 240 cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 67777777777777777763 3334445567777777777777 66777777777777777777764 246777777777
Q ss_pred CCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC
Q 002896 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP 484 (869)
Q Consensus 421 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 484 (869)
|+.+..++|.+. ..|..++.|..|+.|.++.|.+. .+|+.+.-++.|+.||+.+|+-.-..|
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 777777777664 56777777777777777777776 456777777777777777776554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8.2e-32 Score=282.59 Aligned_cols=386 Identities=30% Similarity=0.424 Sum_probs=324.6
Q ss_pred CCCCcCCcccCCCccCC-CCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccc
Q 002896 128 GNLSMLKFLYLSANQFS-GRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206 (869)
Q Consensus 128 ~~l~~L~~L~Ls~n~~~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 206 (869)
+-|+-.|-.|+++|.++ +..|..+..++.++-|.|....+. .+|+.++.|.+|++|.+++|++. .+-..++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 44566788899999998 578999999999999999999987 88999999999999999999987 3445678899999
Q ss_pred eeeccccCCC-CCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcc
Q 002896 207 ILYLHNNSLS-GSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285 (869)
Q Consensus 207 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 285 (869)
.+.+..|++. .-+|..+..+..|+.|||+.|++. ..|..+..-+++-.|+|++|+|..+...-|.+++.|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999999975 347888999999999999999998 78999999999999999999998655556789999999999999
Q ss_pred cCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccc-cccCCCCcCccccceeeccCCcCCCCCc
Q 002896 286 RLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS-SSIPHYLGNLTNLAAFYLYKNSLSGSIP 364 (869)
Q Consensus 286 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 364 (869)
++. .+|+.+..+..|++|.|++|.+...--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|++. ..|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 997 67778899999999999999876433334455677888888886544 357888999999999999999998 789
Q ss_pred cccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcc-cccccccCCC
Q 002896 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSN-SISHSLGNLT 443 (869)
Q Consensus 365 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~ 443 (869)
+.+..+++|+.|++++|+++. +....+...+|++|+++.|+++ .+|.++..+++|+.|.+.+|+++- -+|..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 999999999999999999984 3334455678999999999998 789999999999999999998873 4788899999
Q ss_pred CCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896 444 HMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL 521 (869)
Q Consensus 444 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 521 (869)
+|+.+..++|.+. ..|+.++.|.+|+.|.|+.|++......+.-++.|+.|++..|.--.-+|..-..-.+++.-++
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 9999999999886 7789999999999999999998876667888899999999988644333332222234554443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.9e-23 Score=255.51 Aligned_cols=364 Identities=22% Similarity=0.282 Sum_probs=226.0
Q ss_pred CCEEEEeCCCCCcccc--cCCcCCCCCCCCcEEeCCCCCC------CCCCCCCCCCCC-cCCcccCCCccCCCCCCcccC
Q 002896 82 GRVNSINLTNVNQIFG--IIPPQIGNISKLKYLDLSSNSF------SGTIPPQIGNLS-MLKFLYLSANQFSGRIPPQIG 152 (869)
Q Consensus 82 ~~v~~l~l~~~~~l~~--~~~~~l~~l~~L~~L~Ls~n~~------~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~ 152 (869)
.+|.++.+.-.. +.. .-+.+|..+++|+.|.+..+.+ ...+|..+..++ +||.|++.++.+. .+|..|
T Consensus 532 ~~v~~i~l~~~~-~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDE-IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred ceeeEEEeccCc-cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 456666654322 211 1233578889999998866532 334677777764 5888998888776 777777
Q ss_pred CCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEE
Q 002896 153 HLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSL 232 (869)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 232 (869)
...+|++|++.+|.+. .+|..+..+++|++|+|+++.....+|. ++.+++|+.|++++|.....+|..++++++|++|
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 5688888998888876 5677778888888888888765555553 7778888888888877666778788888888888
Q ss_pred EccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccccc
Q 002896 233 ALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 312 (869)
Q Consensus 233 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~ 312 (869)
++++|..-+.+|..+ ++++|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|++|.+.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 888776555666554 6777888888877655555532 346677777777765 455443 4566666666553321
Q ss_pred CCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCC
Q 002896 313 GSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLG 392 (869)
Q Consensus 313 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 392 (869)
.+...+ ....+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+
T Consensus 761 -~l~~~~----------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 761 -KLWERV----------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred -hccccc----------------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 010000 00011111223455555555555555555555566666666666554434445443
Q ss_pred CCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEE
Q 002896 393 NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML 472 (869)
Q Consensus 393 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 472 (869)
.+++|+.|++++|.....+|.. .++|++|++++|.+.. +|..+..+++|+.|++++|.--..+|..+..+++|+.+
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 4556666666665544343332 2456666666666653 45556666666666666654444455566667777777
Q ss_pred ecCCCc
Q 002896 473 TLSDNQ 478 (869)
Q Consensus 473 ~Ls~n~ 478 (869)
++++|.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 776664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.2e-22 Score=252.10 Aligned_cols=338 Identities=22% Similarity=0.258 Sum_probs=203.9
Q ss_pred CCCCCCCcCCcccCCCcc------CCCCCCcccCCCC-CCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCC
Q 002896 125 PQIGNLSMLKFLYLSANQ------FSGRIPPQIGHLS-YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPP 197 (869)
Q Consensus 125 ~~l~~l~~L~~L~Ls~n~------~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 197 (869)
.+|.++++|++|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..+ ...+|++|++.++++. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 345556666666664432 2223444454442 4566666555554 444444 3455555555555544 2344
Q ss_pred ccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccC
Q 002896 198 SLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL 277 (869)
Q Consensus 198 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 277 (869)
.+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+ ++++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s- 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS- 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-
Confidence 444555555555555443333332 4445555555555544444445555555555555555543333344332 3444
Q ss_pred CccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCC
Q 002896 278 SILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKN 357 (869)
Q Consensus 278 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 357 (869)
|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|+.|.+.++
T Consensus 706 -----------------------L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 706 -----------------------LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred -----------------------CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence 444444444333333321 234455555555543 223222 3444555554442
Q ss_pred cC-------CCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCc
Q 002896 358 SL-------SGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNK 430 (869)
Q Consensus 358 ~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 430 (869)
.. ....+.....+++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 21 11112223345789999999998888899999999999999999997777788766 78999999999987
Q ss_pred CcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCc
Q 002896 431 LSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNH 501 (869)
Q Consensus 431 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~ 501 (869)
....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...++ ....+++|+.+++++|.
T Consensus 837 ~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 837 RLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 65555432 368999999999997 578889999999999999976555554 67888999999999884
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.9e-24 Score=214.77 Aligned_cols=407 Identities=22% Similarity=0.196 Sum_probs=186.6
Q ss_pred CCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCc-ccCCcccCccccCCCCCCeeecc
Q 002896 229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE-NRLNGSIPLSLGNLTNLDTLYLY 307 (869)
Q Consensus 229 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~L~ 307 (869)
-..++|..|+|+...|..|+.+++|+.|+|++|+|+.+-|++|..+++|..|-+.+ |+|+......|+++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34455555555544445555555555555555555555555555555554444443 55544333445555555555555
Q ss_pred cccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCC
Q 002896 308 TNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI 387 (869)
Q Consensus 308 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 387 (869)
-|.+.......|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+-. ..+++.+.. +....
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~~ 216 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAMN 216 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhhc
Confidence 555544444445555555555555555443333344444455555544444210 011111100 00111
Q ss_pred CCCCCCCCcccEEEccCCccccccChhhhCC-CCCCccccCCCcCccc-ccccccCCCCCCeEEccCCCCcccCCccccC
Q 002896 388 PHSLGNLTNLAILYLHSNTLLGSIPREIGNL-KSLFELQLGDNKLSNS-ISHSLGNLTHMTLLALYDNALSGVIPEELGN 465 (869)
Q Consensus 388 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 465 (869)
|..++......-..+.+.++...-+..|... .++..=-.+.+...+. ....|..+++|+.|++++|+++++.+.+|.+
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 1222222222222233333322222222111 1111111111212221 1223555666666666666666666666666
Q ss_pred CCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCc-----C------
Q 002896 466 LVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-----D------ 533 (869)
Q Consensus 466 l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-----~------ 533 (869)
...+++|.|..|++...-. .|.++..|+.|++.+|+|+...|..|.....|.+|++-.|.+.-.--- +
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~ 376 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSV 376 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCC
Confidence 6666666666665543222 455555566666666666666666666666666666655544211000 0
Q ss_pred -----cCCCCCCcEEEccCCCCCCC---CCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCccc
Q 002896 534 -----WGKCPNLGTFDVSVNNIIGS---LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSE 605 (869)
Q Consensus 534 -----~~~~~~L~~L~ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 605 (869)
-+....++.+.+++..+... .|+..+- .- -+..-..++.+.+..=-.|+....+|..
T Consensus 377 ~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~------------~~---s~~cP~~c~c~~tVvRcSnk~lk~lp~~ 441 (498)
T KOG4237|consen 377 VGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC------------LT---SSPCPPPCTCLDTVVRCSNKLLKLLPRG 441 (498)
T ss_pred CCCCCCCCCchhccccchhccccccccCCccccCC------------CC---CCCCCCCcchhhhhHhhcccchhhcCCC
Confidence 00111233333333322110 0110000 00 0001112344444433344444444443
Q ss_pred ccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccccccc
Q 002896 606 LGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHN 668 (869)
Q Consensus 606 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 668 (869)
+ ...-++|++.+|.++ .+|.. .+.+| .+|+|+|+++...-..|.++++|.+|-||+|
T Consensus 442 i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 442 I--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred C--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2 234567778888877 44544 55667 7888888877666667788888888888776
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.8e-24 Score=213.50 Aligned_cols=426 Identities=24% Similarity=0.245 Sum_probs=221.9
Q ss_pred cCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccC-CcCCCCcccccCCCCCCCEEEc
Q 002896 180 SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGN-NKLCGSIPLFLGNLTNLDTLYL 258 (869)
Q Consensus 180 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L 258 (869)
.-..++|..|.|+...+.+|+.+++|+.|||++|.|+.+-|.+|..+++|..|-+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 445667777777766666777777777777777777766666676666665554443 6666444455666666666666
Q ss_pred cCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccc
Q 002896 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSS 338 (869)
Q Consensus 259 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 338 (869)
.-|++.-...+.|..+++|..|.+..|.+...--..|..+..++.+.+..|.+.. ..+++.+.. +...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~ 215 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAM 215 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhh
Confidence 6666555555555566666666666665553322355555556666555554321 111111111 1111
Q ss_pred cCCCCcCccccceeeccCCcCCCCCccccCCC-CCCCEEEccCCcCCCCCC-CCCCCCCcccEEEccCCccccccChhhh
Q 002896 339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL-KSLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNTLLGSIPREIG 416 (869)
Q Consensus 339 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 416 (869)
.|..++...-.....+.+.++...-+..|... .++..--.+.+...+..| ..|..+++|+.|++++|+++++-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 22233333333334444444443322222211 111111112222222333 2466777777777777777777777777
Q ss_pred CCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC--CcCCCCCCCE
Q 002896 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIR 494 (869)
Q Consensus 417 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~ 494 (869)
+...+++|.|..|++.......|.++..|+.|+|++|+++...|.+|..+.+|.+|++-.|++.-.-. .+..
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~------ 369 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE------ 369 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH------
Confidence 77777777777777776666677777777777777777777777777777777777777766542110 0000
Q ss_pred EECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcc
Q 002896 495 LRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHI 574 (869)
Q Consensus 495 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 574 (869)
.+.+....+.. ..+....++.+++++..+...-.. .=++.. +.-++.-| ..++-+.+..=-.|+.
T Consensus 370 -Wlr~~~~~~~~--~Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~~---~~~s~~cP---~~c~c~~tVvRcSnk~ 434 (498)
T KOG4237|consen 370 -WLRKKSVVGNP--RCQSPGFVRQIPISDVAFGDFRCG------GPEELG---CLTSSPCP---PPCTCLDTVVRCSNKL 434 (498)
T ss_pred -HHhhCCCCCCC--CCCCCchhccccchhccccccccC------CccccC---CCCCCCCC---CCcchhhhhHhhcccc
Confidence 00011101111 111222345555555443211100 000000 00000111 1222222221111222
Q ss_pred cccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896 575 IGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644 (869)
Q Consensus 575 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 644 (869)
...+|..+. ..-.+|++.+|.++.+..+ .+.+| .+|+++|+++......|.++++|.+|-||+|
T Consensus 435 lk~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 435 LKLLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 223333332 2334666777766644333 55666 7888888887766677888888888888775
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.9e-20 Score=212.36 Aligned_cols=267 Identities=25% Similarity=0.314 Sum_probs=155.0
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEc
Q 002896 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 450 (869)
Q Consensus 371 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 450 (869)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++.. |. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 44567889998888 5676664 478888888888873 453 246777777777777643 32 1346666666
Q ss_pred cCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccC
Q 002896 451 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 530 (869)
Q Consensus 451 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 530 (869)
++|.++. +|.. ..+|+.|++++|++..... .+ ++|+.|++++|++++.
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p------------------------~~L~~LdLS~N~L~~L- 317 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LP------------------------PGLQELSVSDNQLASL- 317 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccccccc---cc------------------------cccceeECCCCccccC-
Confidence 6666653 2221 2345555555555543211 12 3455555555554432
Q ss_pred CcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCc
Q 002896 531 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI 610 (869)
Q Consensus 531 ~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 610 (869)
|.. ..+|+.|++++|.+++ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|++.+ +|.. ..
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence 211 1234455555555542 3321 1356666666666653 3322 2355566666666653 3332 24
Q ss_pred cccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690 (869)
Q Consensus 611 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 690 (869)
+|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 56777777777764 3432 2467777777777764 4433 235667777777774 567777777777777777
Q ss_pred CCCCCCCcchhhhc
Q 002896 691 HNNLSDFIPRCFEE 704 (869)
Q Consensus 691 ~N~l~~~~p~~l~~ 704 (869)
+|++++.+|..+..
T Consensus 454 ~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 454 GNPLSERTLQALRE 467 (788)
T ss_pred CCCCCchHHHHHHH
Confidence 77777777766643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.5e-19 Score=207.67 Aligned_cols=264 Identities=25% Similarity=0.311 Sum_probs=167.3
Q ss_pred ccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccC
Q 002896 348 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 427 (869)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 427 (869)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 4567899999998 6777665 489999999999985 554 25799999999999984 5542 4689999999
Q ss_pred CCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccC
Q 002896 428 DNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS 507 (869)
Q Consensus 428 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 507 (869)
+|.+... |.. ..+|+.|++++|+++.. |. ..++|+.|++++|++.+. |.+ ..+|+.|++++|.+++. |
T Consensus 271 ~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~L-P 338 (788)
T PRK15387 271 SNPLTHL-PAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTSL-P 338 (788)
T ss_pred CCchhhh-hhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC--cccccccccccCccccc-c
Confidence 9998753 322 35788999999999854 43 247899999999999864 322 34577788888877653 2
Q ss_pred ccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcc
Q 002896 508 ESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSS 587 (869)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 587 (869)
. ...+|+.|++++|++++ +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|++++ +|.. .++
T Consensus 339 ~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred c---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 2 12467777777777764 3322 2456666666666653 4432 2356666666666653 3321 134
Q ss_pred cceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhh
Q 002896 588 LIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654 (869)
Q Consensus 588 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 654 (869)
|+.|++++|++.+ +|.. +.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++.++..+
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5555555555543 2321 223444555555544 344444444555555555555544444433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=3.8e-19 Score=205.91 Aligned_cols=245 Identities=25% Similarity=0.409 Sum_probs=143.6
Q ss_pred CCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccc
Q 002896 133 LKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN 212 (869)
Q Consensus 133 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 212 (869)
...|+++++.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|++|++++|+++. +|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcC
Confidence 445555555554 3444332 34555666665555 3444332 356666666665552 333332 2566666666
Q ss_pred cCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccC
Q 002896 213 NSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIP 292 (869)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p 292 (869)
|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 6665 4454443 35667777766666 3454443 367777777776663 444332 357777777777763 44
Q ss_pred ccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCC
Q 002896 293 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS 372 (869)
Q Consensus 293 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 372 (869)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++ .+|..+. ..
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHH--HH
Confidence 333 2567777777777764 554442 577777777777763 444332 56777788777777 3454443 35
Q ss_pred CCEEEccCCcCCCCCCCCC----CCCCcccEEEccCCccc
Q 002896 373 LSNLDLSENKLSGSIPHSL----GNLTNLAILYLHSNTLL 408 (869)
Q Consensus 373 L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~ 408 (869)
|+.|++++|++. .+|..+ ..++.+..+++.+|++.
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 777788888776 344433 34577888888888876
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=4.9e-18 Score=196.77 Aligned_cols=268 Identities=25% Similarity=0.345 Sum_probs=181.2
Q ss_pred CCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECc
Q 002896 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 498 (869)
Q Consensus 419 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~ 498 (869)
.+...|+++++.++. +|..+. +.++.|++++|+++. +|..+. .+|++|++++|.+......+ ..+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCChhh--hccccEEECc
Confidence 356788888888875 344343 578899999998885 444443 58899999999887543233 2478888888
Q ss_pred CCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC
Q 002896 499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 578 (869)
Q Consensus 499 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 578 (869)
+|.+.. +|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++. +
T Consensus 250 ~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRITE-LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccCc-CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 888874 344432 478888888888874 455442 578888888888874 454433 468888888888874 4
Q ss_pred CcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccc
Q 002896 579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658 (869)
Q Consensus 579 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 658 (869)
|..+. ++|+.|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+. ++|+.|+|++|++++ +|..+. .
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Ccccc--ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence 54433 678888888888775 45443 367888888888887 4565543 678888888888864 455554 3
Q ss_pred ccccccccccccCCc---hhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccC
Q 002896 659 HLSELDLSHNFLGKE---IPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPI 722 (869)
Q Consensus 659 ~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~ 722 (869)
.|+.|++++|++++. +|..+..++.+..|++.+|+++. ..+.+ |+.+ ++.+.+.|++
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~~---L~~L-l~s~~~~gp~ 448 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQN---MQRL-MSSVGYQGPR 448 (754)
T ss_pred HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH---HHHHH---HHHh-hhcccccCCc
Confidence 688888888888632 33344455778888888888874 33333 3333 3445555543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.5e-19 Score=195.57 Aligned_cols=279 Identities=23% Similarity=0.237 Sum_probs=157.2
Q ss_pred ccccCCCcCc-ccccccccCCCCCCeEEccCCCCccc----CCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEEC
Q 002896 423 ELQLGDNKLS-NSISHSLGNLTHMTLLALYDNALSGV----IPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRL 497 (869)
Q Consensus 423 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l 497 (869)
.|+|..+.++ ......+..+..|+.++++++.++.. ++..+...+.+++++++++.+.+....
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~------------ 69 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG------------ 69 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH------------
Confidence 4566666665 23334445566677777777776432 333444555566666666554320000
Q ss_pred cCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCC---CCCcEEEccCCCCCCC----CCcCcCCC-CCCCEEEc
Q 002896 498 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC---PNLGTFDVSVNNIIGS----LPPEIGDS-SQLHVIDL 569 (869)
Q Consensus 498 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~ls~n~l~~~----~p~~l~~l-~~L~~L~L 569 (869)
....+..+..+++|+.|++++|.+.+..+..+..+ ++|++|++++|++++. +...+..+ ++|+.|++
T Consensus 70 -----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 70 -----LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred -----HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 01112233344555555555555543333333222 2366666666665521 22233444 66777777
Q ss_pred cCCccccc----CCcccccCcccceeeccCcccccc----CcccccCCcccccccccccccccc----ccccccCCCCCC
Q 002896 570 SANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLH 637 (869)
Q Consensus 570 s~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~ 637 (869)
++|.+++. ++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++. ++..+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 77766632 223345556677777777766532 233344556777777777776543 233456677788
Q ss_pred eeeCcCCcCCcccchhhhc-----ccccccccccccccCC----chhhhhcCCCCCcEEeCCCCCCCCC----cchhhhc
Q 002896 638 YLNLSTNQFIQEIPIKLEK-----LIHLSELDLSHNFLGK----EIPSQICNMRSLEMLNLSHNNLSDF----IPRCFEE 704 (869)
Q Consensus 638 ~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~ 704 (869)
.|++++|++++.....+.. .+.|+.|++++|.++. .+.+.+..+++|+++++++|.++.. ....+..
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 8888888776543333322 2678888888887762 3445566667888888888888755 3333433
Q ss_pred C-CCCcEEEccCCcc
Q 002896 705 M-NGLLYIDISYNEL 718 (869)
Q Consensus 705 l-~~L~~L~ls~N~l 718 (869)
. +.|+.+++.+|++
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (319)
T cd00116 305 PGNELESLWVKDDSF 319 (319)
T ss_pred cCCchhhcccCCCCC
Confidence 3 5777888877764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=8.3e-19 Score=189.67 Aligned_cols=276 Identities=26% Similarity=0.287 Sum_probs=169.8
Q ss_pred EEEccCCccc-cccChhhhCCCCCCccccCCCcCccc----ccccccCCCCCCeEEccCCCCcc------cCCccccCCC
Q 002896 399 ILYLHSNTLL-GSIPREIGNLKSLFELQLGDNKLSNS----ISHSLGNLTHMTLLALYDNALSG------VIPEELGNLV 467 (869)
Q Consensus 399 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l~ 467 (869)
.|+|..+.++ +.....+..+..|++|+++++.+++. ++..+...+.++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677888887 44556677888899999999998653 45556778889999999998763 2334556677
Q ss_pred CCcEEecCCCcCcCCCC-CcCCC---CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCC-CCCcE
Q 002896 468 KLTMLTLSDNQLQGSIP-NLRNL---TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKC-PNLGT 542 (869)
Q Consensus 468 ~L~~L~Ls~n~l~~~~~-~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~L~~ 542 (869)
+|+.|++++|.+.+..+ .+..+ ++|++|++++|.++..... .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~--------------------~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR--------------------LLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH--------------------HHHHHHHhCCCCceE
Confidence 88888888777764322 12222 3366666665555421110 111122223 44555
Q ss_pred EEccCCCCCCC----CCcCcCCCCCCCEEEccCCccccc----CCcccccCcccceeeccCcccccc----CcccccCCc
Q 002896 543 FDVSVNNIIGS----LPPEIGDSSQLHVIDLSANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLI 610 (869)
Q Consensus 543 L~ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~ 610 (869)
|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+. ++..+..++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 55555554422 222344455566666666665531 222334455666666666666433 233455667
Q ss_pred ccccccccccccccccccccc-----CCCCCCeeeCcCCcCC----cccchhhhcccccccccccccccCCc----hhhh
Q 002896 611 QLEYLDLSSNRLSNSIPRSLG-----NLVKLHYLNLSTNQFI----QEIPIKLEKLIHLSELDLSHNFLGKE----IPSQ 677 (869)
Q Consensus 611 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~ 677 (869)
+|++|++++|.+++.....+. ..+.|+.|++++|.++ ..+...+..+++|+++++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 788888888877653222221 2478889999988886 23345566778899999999999855 4455
Q ss_pred hcCC-CCCcEEeCCCCCC
Q 002896 678 ICNM-RSLEMLNLSHNNL 694 (869)
Q Consensus 678 l~~l-~~L~~L~Ls~N~l 694 (869)
+... +.|++|++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 5555 7889999888864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.8e-18 Score=154.28 Aligned_cols=164 Identities=34% Similarity=0.575 Sum_probs=118.7
Q ss_pred CCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCc
Q 002896 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN 182 (869)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 182 (869)
+.++.+.+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|++|++.-|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 456677888888888887 66777888888888888888887 77888888888888888888776 6777888888888
Q ss_pred eeeccCcccCC-CCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCC
Q 002896 183 ELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 261 (869)
Q Consensus 183 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 261 (869)
.|||.+|++.. .+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- .+|..++.+++|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 88888877753 55666777777777777777666 55666666666666666666655 45666666666666666666
Q ss_pred CCCCCCCCCCC
Q 002896 262 SFSSSIPSEIG 272 (869)
Q Consensus 262 ~l~~~~~~~l~ 272 (869)
+++ .+|..++
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 655 4444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=7.6e-18 Score=150.32 Aligned_cols=164 Identities=35% Similarity=0.565 Sum_probs=120.6
Q ss_pred CCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccc
Q 002896 127 IGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLA 206 (869)
Q Consensus 127 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 206 (869)
+-.+.+.+.|.||+|.++ .+|+.+..+.+|++|++++|+++ .+|..++.+++|++|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445677888889999888 77778888888888888888887 67778888888888888888776 5677777777777
Q ss_pred eeeccccCCCC-CCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcc
Q 002896 207 ILYLHNNSLSG-SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285 (869)
Q Consensus 207 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 285 (869)
+|||.+|.+.. .+|..|..++.|+.|.++.|.+. .+|..++++++|+.|.++.|.+- .+|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 77777777653 46666667777777777777766 66666777777777777777665 56666777777777777777
Q ss_pred cCCcccCcccc
Q 002896 286 RLNGSIPLSLG 296 (869)
Q Consensus 286 ~~~~~~p~~l~ 296 (869)
+++ .+|..++
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 766 3444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=168.81 Aligned_cols=148 Identities=35% Similarity=0.609 Sum_probs=109.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCC-----ccCceeeCC---C--CCEEEEeCCCCCcccccCCc
Q 002896 32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPC-----AWFGIHCNH---V--GRVNSINLTNVNQIFGIIPP 101 (869)
Q Consensus 32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c-----~w~gv~c~~---~--~~v~~l~l~~~~~l~~~~~~ 101 (869)
...++|.+||+++|+.+.. + . ..+|. . ++| .|.||.|.. . .+|+.|+|++.. +.|.+|+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~-~-~--~~~W~----g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g~ip~ 436 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGL-P-L--RFGWN----G--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG-LRGFIPN 436 (623)
T ss_pred ccCchHHHHHHHHHHhcCC-c-c--cCCCC----C--CCCCCcccccccceeeccCCCCceEEEEEECCCCC-ccccCCH
Confidence 3456899999999999864 3 1 24896 2 334 799999952 1 247788888777 7888888
Q ss_pred CCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCC-Cc
Q 002896 102 QIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGL-SS 180 (869)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~ 180 (869)
.++++++|+.|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|.++|.+|..++++ .+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 88888888888888888887788778888888888888888887778777777888888888777777777766543 34
Q ss_pred CceeeccCcc
Q 002896 181 LNELALTSNF 190 (869)
Q Consensus 181 L~~L~L~~n~ 190 (869)
+..+++.+|.
T Consensus 517 ~~~l~~~~N~ 526 (623)
T PLN03150 517 RASFNFTDNA 526 (623)
T ss_pred CceEEecCCc
Confidence 4555555554
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.5e-14 Score=167.77 Aligned_cols=117 Identities=29% Similarity=0.508 Sum_probs=77.3
Q ss_pred CCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccC
Q 002896 636 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISY 715 (869)
Q Consensus 636 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 715 (869)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|||++|++++.+|..++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666666666777777766666666667777777777777777777777777777777777777
Q ss_pred CcccccCCCCc--cccccchhhhcCCCCCCCCCCCCCCCC
Q 002896 716 NELHGPIPNST--AFSDALMEALQGNEGLCGDIKGFQSCK 753 (869)
Q Consensus 716 N~l~g~~p~~~--~~~~~~~~~~~gn~~lc~~~~~~~~C~ 753 (869)
|+++|.+|..- .+.......+.+|+.+|+. |....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC-CCCCCCc
Confidence 77777776431 1111122346789999986 5567785
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.6e-12 Score=136.22 Aligned_cols=171 Identities=34% Similarity=0.513 Sum_probs=88.1
Q ss_pred CEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCc
Q 002896 517 TFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRN 596 (869)
Q Consensus 517 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 596 (869)
...|++.|++. .+|..+..+-.|+.+.+..|.+- .+|..+.++..|+++||+.|+++ ..|..+..++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 45566666665 34555555555666666666554 45555666666666666666655 3444444333 455555555
Q ss_pred cccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhh
Q 002896 597 QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPS 676 (869)
Q Consensus 597 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 676 (869)
+++ .+|+.++....|..||.+.|.+. .+|..++++.+|+.|.+..|++.. .|.++..| .|..||+|+|++ ..||-
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNki-s~iPv 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKI-SYLPV 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCce-eecch
Confidence 543 33444444455555555555554 334445555555555555555432 33333322 244455555555 34455
Q ss_pred hhcCCCCCcEEeCCCCCCCC
Q 002896 677 QICNMRSLEMLNLSHNNLSD 696 (869)
Q Consensus 677 ~l~~l~~L~~L~Ls~N~l~~ 696 (869)
.|.+|+.|++|-|.+|.|..
T Consensus 229 ~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhheeeeeccCCCCC
Confidence 55555555555555555544
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=2.1e-10 Score=127.68 Aligned_cols=102 Identities=35% Similarity=0.508 Sum_probs=44.4
Q ss_pred cccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCC-cCceeeccCcccCCCCCCccccccccceeecccc
Q 002896 135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLS-SLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213 (869)
Q Consensus 135 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 213 (869)
.++++.+.+... +..+..++.++.|++.+|.++ .+|...+.+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555544311 222333455555555555555 3344444442 5555555555544 22233444444444444444
Q ss_pred CCCCCCCccccCCCCCCEEEccCCcCC
Q 002896 214 SLSGSIPSEIGNLKSLSSLALGNNKLC 240 (869)
Q Consensus 214 ~l~~~~~~~l~~l~~L~~L~L~~n~l~ 240 (869)
.+. .+|...+..+.|+.|++++|+++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc
Confidence 444 22222223344444444444443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.1e-10 Score=129.92 Aligned_cols=198 Identities=38% Similarity=0.549 Sum_probs=139.5
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCC-CCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896 111 YLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLS-YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN 189 (869)
Q Consensus 111 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (869)
.++++.+.+... +..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 577777766422 234555678888888888887 6777777774 8888999888887 55567888889999999998
Q ss_pred ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269 (869)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 269 (869)
++.. +|...+..++|+.|++++|.+. .+|........|+++.+++|... ..+..+.++.++..+.+.+|++.. .+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 8874 4444457888899999999888 55555555666888888888533 445556677777777777776652 245
Q ss_pred CCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCC
Q 002896 270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPS 317 (869)
Q Consensus 270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~ 317 (869)
.++.+++++.|++++|.++.. +. ++.+.+++.|++++|.+....|.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 566667777777777777633 32 66677777777777776655443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=3.9e-12 Score=134.88 Aligned_cols=174 Identities=33% Similarity=0.484 Sum_probs=102.4
Q ss_pred CCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896 106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA 185 (869)
Q Consensus 106 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 185 (869)
+.--...||+.|.+. .+|..++.+..|+.+.|..|.+. .+|..+.++..|.+|||+.|+++ ..|..+..|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344445666777666 56666666666666677666665 56666666666666666666665 4555555544 56666
Q ss_pred ccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC
Q 002896 186 LTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265 (869)
Q Consensus 186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (869)
+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+ .|..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 6666655 44555555555666666666555 34445555566666666555554 344444422 3555555555555
Q ss_pred CCCCCCCCCccCCccccCcccCC
Q 002896 266 SIPSEIGNLKSLSILELGENRLN 288 (869)
Q Consensus 266 ~~~~~l~~l~~L~~L~L~~n~~~ 288 (869)
.+|..|.+++.|++|-|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 45555555555555555555554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.7e-11 Score=124.89 Aligned_cols=210 Identities=25% Similarity=0.239 Sum_probs=105.9
Q ss_pred CCCCCCCEEECcCCcCccccC-ccccCCCCCCEEeCCCCcccccCC--cCcCCCCCCcEEEccCCCCCCCCCcCc-CCCC
Q 002896 487 RNLTNLIRLRLNRNHLTCNIS-ESFGIHPKLTFIDLSHNNFYGQIS--SDWGKCPNLGTFDVSVNNIIGSLPPEI-GDSS 562 (869)
Q Consensus 487 ~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~l-~~l~ 562 (869)
+++.+|+.+.++++.+..... .....+++++.||++.|-++...+ .....+|+|+.|+++.|++........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456677777777776554332 234456666677776665543211 122345566666666665542221111 1334
Q ss_pred CCCEEEccCCcccccCCcccccCcccceeeccCcccccc-CcccccCCccccccccccccccccccccccCCCCCCeeeC
Q 002896 563 QLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL 641 (869)
Q Consensus 563 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 641 (869)
+|+.|.++.|.++ .. +......+++|+.|+|..|............+..|+.|||
T Consensus 198 ~lK~L~l~~CGls------------------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS------------------------WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred hhheEEeccCCCC------------------------HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 4444444444443 21 1112234455555555555422222233344455566666
Q ss_pred cCCcCCccc-chhhhcccccccccccccccCCc-hhhh-----hcCCCCCcEEeCCCCCCCCCc-chhhhcCCCCcEEEc
Q 002896 642 STNQFIQEI-PIKLEKLIHLSELDLSHNFLGKE-IPSQ-----ICNMRSLEMLNLSHNNLSDFI-PRCFEEMNGLLYIDI 713 (869)
Q Consensus 642 s~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l 713 (869)
++|++.... -...+.++.|..|+++.+.+... +|+. ...+++|++|+++.|++.... -..+..+.+|+.+.+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 665554322 12345556666666666665432 2222 345567777777777775431 133444556666666
Q ss_pred cCCcccc
Q 002896 714 SYNELHG 720 (869)
Q Consensus 714 s~N~l~g 720 (869)
..|+++-
T Consensus 334 ~~n~ln~ 340 (505)
T KOG3207|consen 334 TLNYLNK 340 (505)
T ss_pred ccccccc
Confidence 6666654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=8.4e-11 Score=115.03 Aligned_cols=133 Identities=25% Similarity=0.276 Sum_probs=82.8
Q ss_pred CcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccc
Q 002896 585 LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD 664 (869)
Q Consensus 585 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 664 (869)
+..|+.+|+++|.++. +.+...-.+.++.|++|+|.+... +.+..+++|+.||||+|.++... .+=..+.+.+.|.
T Consensus 283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence 3445555555555432 233344556666666666666533 23666677777777777764432 2223456667777
Q ss_pred ccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc-hhhhcCCCCcEEEccCCcccccCC
Q 002896 665 LSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP-RCFEEMNGLLYIDISYNELHGPIP 723 (869)
Q Consensus 665 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g~~p 723 (869)
|+.|.|... ..++.+-+|..||+++|++..... ..+++++-|+.+.+.+||+.+.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 777776332 445666777788888887766532 567788888888888888887655
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=2.9e-11 Score=121.38 Aligned_cols=184 Identities=25% Similarity=0.306 Sum_probs=106.7
Q ss_pred CCCCCcEEEccCCCCCCCCCcC----cCCCCCCCEEEccCCcccccC-------------CcccccCcccceeeccCccc
Q 002896 536 KCPNLGTFDVSVNNIIGSLPPE----IGDSSQLHVIDLSANHIIGKI-------------PSEIGKLSSLIKLILRRNQL 598 (869)
Q Consensus 536 ~~~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~L~~n~l 598 (869)
.+++|++++||+|.+...-++. +.++..|+.|+|.+|.+.-.- ....+.-+.|+.++..+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4455555555555554332222 234555666666666543110 01122345666666666665
Q ss_pred ccc----CcccccCCccccccccccccccc----cccccccCCCCCCeeeCcCCcCCcc----cchhhhccccccccccc
Q 002896 599 FGQ----LPSELGSLIQLEYLDLSSNRLSN----SIPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLS 666 (869)
Q Consensus 599 ~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls 666 (869)
..- +...|...+.|+.+.++.|.|.. .....|..+++|+.|||.+|-++.. +...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 322 23345556677777777776532 2234567777888888888777633 23445666778888888
Q ss_pred ccccCCchhhhh-----cCCCCCcEEeCCCCCCCCC----cchhhhcCCCCcEEEccCCccc
Q 002896 667 HNFLGKEIPSQI-----CNMRSLEMLNLSHNNLSDF----IPRCFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 667 ~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 719 (869)
+|.+.......| ...|+|++|.+.+|.++.. +...+...+.|..|++++|.+.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 887765543332 2357788888888877643 2334455677888888888773
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4e-10 Score=106.85 Aligned_cols=106 Identities=31% Similarity=0.368 Sum_probs=28.5
Q ss_pred cccccccccccccccccccccc-CCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEe
Q 002896 610 IQLEYLDLSSNRLSNSIPRSLG-NLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLN 688 (869)
Q Consensus 610 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 688 (869)
..+++|+|.+|.|+.+ +.++ .+.+|+.|||++|.++.. +.+..++.|++|++++|+|+...+.....+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445555555555432 1233 345555555555555443 2345555666666666666443222223456666666
Q ss_pred CCCCCCCCCcc-hhhhcCCCCcEEEccCCccc
Q 002896 689 LSHNNLSDFIP-RCFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 689 Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~ 719 (869)
+++|+|..... ..++.+++|+.|++.+||++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666655322 44555666666666666664
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=6e-10 Score=132.05 Aligned_cols=131 Identities=25% Similarity=0.315 Sum_probs=91.0
Q ss_pred CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCcc--CCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCc
Q 002896 105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQ--FSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN 182 (869)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~--~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 182 (869)
+....|...+-+|.+. .++... .+++|++|-+.+|. +....+..|..++.|++|||++|.-.+.+|..++++-+||
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3456677777777664 233332 23468888777775 4423334467788888888888777778888888888888
Q ss_pred eeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCc
Q 002896 183 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNK 238 (869)
Q Consensus 183 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 238 (869)
+|+++++.+. .+|..++++..|.+|++..+.-...+|.....+++|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8888888877 677788888888888888776555555556667888888776543
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=2.9e-11 Score=121.47 Aligned_cols=247 Identities=22% Similarity=0.260 Sum_probs=128.6
Q ss_pred CCCCCCCcEEeCCCCCCCCC----CCCCCCCCCcCCcccCCCcc---CCCCCCcc-------cCCCCCCCEEEcCCCCCC
Q 002896 103 IGNISKLKYLDLSSNSFSGT----IPPQIGNLSMLKFLYLSANQ---FSGRIPPQ-------IGHLSYIEALHLFKNQLS 168 (869)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~---~~~~~p~~-------l~~l~~L~~L~L~~n~l~ 168 (869)
+..+..+++++||+|.|... +...+.+.++|+..++|+-. ....+|.. +..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 33445566666666665422 33344555566666665431 22233332 234456666666666554
Q ss_pred CCCCcc----ccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCC--
Q 002896 169 GPIPHE----VGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS-- 242 (869)
Q Consensus 169 ~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-- 242 (869)
...+.. +..++.|++|.|.+|.+.-.-...++. .|..|. .+ ...+.-+.|+++....|++...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccH
Confidence 433332 234555555555555443111111110 011111 00 1122334566666666665432
Q ss_pred --cccccCCCCCCCEEEccCCCCCCC----CCCCCCCCccCCccccCcccCCcc----cCccccCCCCCCeeeccccccc
Q 002896 243 --IPLFLGNLTNLDTLYLRNNSFSSS----IPSEIGNLKSLSILELGENRLNGS----IPLSLGNLTNLDTLYLYTNSLS 312 (869)
Q Consensus 243 --~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~ 312 (869)
+...|...+.|+.+.++.|.+... +...+..+++|++|||..|.++.. +...+..+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 223344556677777766655421 122356677777777777766532 2334556677778888777765
Q ss_pred CCCCCcc-----cCCCCCCeEeccCCccccc----cCCCCcCccccceeeccCCcCC
Q 002896 313 GSIPSEI-----GNLKSLSGLELADNELSSS----IPHYLGNLTNLAAFYLYKNSLS 360 (869)
Q Consensus 313 ~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 360 (869)
..-...+ ...|+|+.|.+.+|.++.. +.......+.|+.|+|+.|.+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4322222 2357788888888877642 2223445678888888888873
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=2.7e-10 Score=134.88 Aligned_cols=106 Identities=31% Similarity=0.365 Sum_probs=67.4
Q ss_pred CCcEEeCCCCC--CCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896 108 KLKYLDLSSNS--FSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA 185 (869)
Q Consensus 108 ~L~~L~Ls~n~--~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 185 (869)
.|++|-+.+|. +....++.|..++.|++|||++|.--+.+|..++.|.+||+|+++++.+. .+|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 56666666664 33222334566777777777776655667777777777777777777766 6667777777777777
Q ss_pred ccCcccCCCCCCccccccccceeeccccC
Q 002896 186 LTSNFLKGSIPPSLGNLTNLAILYLHNNS 214 (869)
Q Consensus 186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 214 (869)
+..+.-...+|.....+++|++|.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccc
Confidence 77665544445555557777777665543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=1.1e-09 Score=103.71 Aligned_cols=128 Identities=29% Similarity=0.314 Sum_probs=54.2
Q ss_pred cccCcccceeeccCccccccCccccc-CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhh-hcccc
Q 002896 582 IGKLSSLIKLILRRNQLFGQLPSELG-SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL-EKLIH 659 (869)
Q Consensus 582 l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~ 659 (869)
+.+..++++|+|++|.+..+- .++ .+.+|+.||+++|.++.. +.+..++.|+.|++++|+++... ..+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT
T ss_pred ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCc
Confidence 455668899999999997653 344 578999999999999865 36888999999999999997643 344 47899
Q ss_pred cccccccccccCCch-hhhhcCCCCCcEEeCCCCCCCCCcc---hhhhcCCCCcEEEcc
Q 002896 660 LSELDLSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDIS 714 (869)
Q Consensus 660 L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls 714 (869)
|++|++++|+|.... -..+..+++|++|+|.+|+++...- ..+..+++|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999999996542 2567889999999999999986521 345778899988753
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.4e-10 Score=119.67 Aligned_cols=208 Identities=28% Similarity=0.342 Sum_probs=99.3
Q ss_pred CCCccCCccccCcccCCcccC-ccccCCCCCCeeecccccccCCCC--CcccCCCCCCeEeccCCccccccCCC-CcCcc
Q 002896 272 GNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNELSSSIPHY-LGNLT 347 (869)
Q Consensus 272 ~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~ 347 (869)
.++++|+.+.|.+..+..... .....|++++.|+|+.|-+....+ .....+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456777888887776642211 244567777777777776553211 22345666777777776654322111 11234
Q ss_pred ccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccC
Q 002896 348 NLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLG 427 (869)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 427 (869)
+|+.|.++.|.++... +......+|+|+.|++..|.....-.....-+..|++|||+
T Consensus 198 ~lK~L~l~~CGls~k~-----------------------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKD-----------------------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhheEEeccCCCCHHH-----------------------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 4444455444444211 11112234445555555443211111222333445555555
Q ss_pred CCcCcccc-cccccCCCCCCeEEccCCCCcccC-Ccc-----ccCCCCCcEEecCCCcCcC--CCCCcCCCCCCCEEECc
Q 002896 428 DNKLSNSI-SHSLGNLTHMTLLALYDNALSGVI-PEE-----LGNLVKLTMLTLSDNQLQG--SIPNLRNLTNLIRLRLN 498 (869)
Q Consensus 428 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~l~ 498 (869)
+|.+-... ....+.++.|+.|+++.+.+...- |+. ...+++|++|+++.|++.. .+..+..+++|+.|.+.
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 55443321 122345555555555555554431 111 2345667777777776642 22234444445555544
Q ss_pred CCcC
Q 002896 499 RNHL 502 (869)
Q Consensus 499 ~n~l 502 (869)
.|.+
T Consensus 335 ~n~l 338 (505)
T KOG3207|consen 335 LNYL 338 (505)
T ss_pred cccc
Confidence 4444
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.9e-10 Score=108.73 Aligned_cols=134 Identities=27% Similarity=0.318 Sum_probs=86.7
Q ss_pred cccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCC
Q 002896 222 EIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNL 301 (869)
Q Consensus 222 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 301 (869)
.+...+.|+++||++|.++ .+.++..-.+.++.|++++|.+... +.+..+++|+.||+++|.++ .+..+-..+.+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3445567777888887776 5556666677777888887777633 23667777777777777765 344444566777
Q ss_pred CeeecccccccCCCCCcccCCCCCCeEeccCCcccccc-CCCCcCccccceeeccCCcCCC
Q 002896 302 DTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSI-PHYLGNLTNLAAFYLYKNSLSG 361 (869)
Q Consensus 302 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 361 (869)
++|.|+.|.+... +.++.+.+|..||+++|++.... -..++++|-|+.+.|.+|.+.+
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777777766422 34566667777777777765432 2445666666666666666654
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.79 E-value=7.2e-09 Score=73.49 Aligned_cols=41 Identities=37% Similarity=0.902 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC-CCCCCccCceeeC
Q 002896 35 TEEVHALLKWKTSLQNHDKGSLLPSWTLNNAT-KISPCAWFGIHCN 79 (869)
Q Consensus 35 ~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~-~~~~c~w~gv~c~ 79 (869)
++|++||++||+++..++ .+.+.+|+ .. ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~-~~~l~~W~---~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDP-SGVLSSWN---PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC--CCCTT-----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhccccc-CcccccCC---CcCCCCCeeeccEEeC
Confidence 689999999999998655 67899998 22 2799999999996
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.2e-09 Score=121.60 Aligned_cols=196 Identities=33% Similarity=0.393 Sum_probs=100.7
Q ss_pred CCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCcccccccccee
Q 002896 129 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 208 (869)
Q Consensus 129 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 208 (869)
.+..++.+++..|.+.. +-..+..+.+|..|++.+|.+.+. ...+..+++|++|++++|+|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 44555555566665552 223355566666666666666532 222555666666666666665432 24445556666
Q ss_pred eccccCCCCCCCccccCCCCCCEEEccCCcCCCCcc-cccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccC
Q 002896 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIP-LFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRL 287 (869)
Q Consensus 209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 287 (869)
++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 6666666532 224445666666666666653333 1 34555666666666655422 2233344444455555555
Q ss_pred CcccCccccCCCC--CCeeecccccccCCCCCcccCCCCCCeEeccCCccc
Q 002896 288 NGSIPLSLGNLTN--LDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS 336 (869)
Q Consensus 288 ~~~~p~~l~~l~~--L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 336 (869)
+..-+ +..+.. |+.+++++|.+. ..+..+..+..+..+++.+|++.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 42211 111222 556666666554 22233444555555555555544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.8e-09 Score=120.21 Aligned_cols=57 Identities=32% Similarity=0.436 Sum_probs=26.1
Q ss_pred cccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCccc
Q 002896 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 719 (869)
|+.+++++|++. .+++.+..++.++.|++++|++... ..+.....+..+....|++.
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 455555555552 2223344455555555555555443 12233334444445555443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=3.3e-09 Score=82.50 Aligned_cols=60 Identities=42% Similarity=0.651 Sum_probs=37.9
Q ss_pred ccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcc
Q 002896 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718 (869)
Q Consensus 659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 718 (869)
+|++|++++|+++...++.|..+++|++|++++|+++...|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666555555666666666666666666666666666666666666666654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=6e-09 Score=81.06 Aligned_cols=60 Identities=38% Similarity=0.514 Sum_probs=36.6
Q ss_pred CCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCC
Q 002896 635 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNL 694 (869)
Q Consensus 635 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 694 (869)
+|++|++++|++....+..|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666665555555566666666666666666555556666666666666666653
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=2.4e-09 Score=116.92 Aligned_cols=129 Identities=29% Similarity=0.268 Sum_probs=91.1
Q ss_pred cccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccc
Q 002896 586 SSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDL 665 (869)
Q Consensus 586 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 665 (869)
-.|...+.+.|.+. .....+.-++.|+.|||++|+++... .+..|+.|++|||++|.+.....-...++. |+.|+|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 34556666666664 23345556778888888888887543 677888888888888887655444445555 888888
Q ss_pred cccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc-hhhhcCCCCcEEEccCCcccc
Q 002896 666 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP-RCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 666 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g 720 (869)
++|.++.. ..+.++.+|+.||+++|-|.+... ..+..+.+|..|++.+||+-|
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 88888654 346678888888888888877533 334556678888888888765
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1.4e-08 Score=111.24 Aligned_cols=199 Identities=29% Similarity=0.342 Sum_probs=132.0
Q ss_pred CCCCcEEEccCCCCCCCC-CcCcCCCCCCCEEEccCCcccccCCcccccC-cccceeeccCcccc----------ccCcc
Q 002896 537 CPNLGTFDVSVNNIIGSL-PPEIGDSSQLHVIDLSANHIIGKIPSEIGKL-SSLIKLILRRNQLF----------GQLPS 604 (869)
Q Consensus 537 ~~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~~~ 604 (869)
+++++.+.+-.-.-.+.. |-.+..+.+|+.|.+.++.+... ..+..+ ..|++|. .+|.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhcccccc
Confidence 344445544333322322 66677888999999999988631 111111 2233332 222221 11111
Q ss_pred cccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhh-hcCCCC
Q 002896 605 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQ-ICNMRS 683 (869)
Q Consensus 605 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 683 (869)
.+ ....|...+.++|.+. ....++.-++.|+.|||++|+++... .+..++.|++|||++|.+.. +|.. ...+ .
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-K 233 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhh-h
Confidence 11 2346888999999997 55668888999999999999997764 78899999999999999954 4432 2233 4
Q ss_pred CcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC--CccccccchhhhcCCCCCCCCC
Q 002896 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN--STAFSDALMEALQGNEGLCGDI 746 (869)
Q Consensus 684 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~--~~~~~~~~~~~~~gn~~lc~~~ 746 (869)
|+.|++++|.++.. ..+.++.+|+.||++||-+.+.-.- .|.+.....-..+|||.-|.+|
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 99999999999876 5678899999999999998874321 1222333333478999988654
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=7.9e-08 Score=83.76 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=36.8
Q ss_pred cccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690 (869)
Q Consensus 611 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 690 (869)
.|+..+|++|.+....+..-...+.++.|+|++|.+ ..+|.++..++.|+.|+++.|.+ ...|+.+..+.+|-.||..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcCC
Confidence 344444444444422222222223444455555544 23444455555555555555555 2333334445555555555
Q ss_pred CCCCCC
Q 002896 691 HNNLSD 696 (869)
Q Consensus 691 ~N~l~~ 696 (869)
+|.+..
T Consensus 132 ~na~~e 137 (177)
T KOG4579|consen 132 ENARAE 137 (177)
T ss_pred CCcccc
Confidence 554444
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=6.1e-07 Score=88.53 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCCeEeccCCcccccc-CCCCcCccccceeeccCCcCCCCC-ccccCCCCCCCEEEccCCcCCC
Q 002896 323 KSLSGLELADNELSSSI-PHYLGNLTNLAAFYLYKNSLSGSI-PSEIGNLKSLSNLDLSENKLSG 385 (869)
Q Consensus 323 ~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~ 385 (869)
|++..+-+..|.+.... ...+..++.+..|+|+.+++..-. -+++..++.|..|.++++.+..
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 44444555555443221 123344455556666666654311 1234556666666666665543
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.2e-07 Score=93.51 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=49.9
Q ss_pred CCCEEeCCCCccccc-CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC--CcccccCccccee
Q 002896 515 KLTFIDLSHNNFYGQ-ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI--PSEIGKLSSLIKL 591 (869)
Q Consensus 515 ~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L 591 (869)
.|+++|+++..++.. .-..+..|.+|+.|.+.++++.+.+-..+..-.+|+.|+++.+.-.... .--+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 578888887766532 1123456777777777777777666666666667777777766322111 1123455555555
Q ss_pred eccCcccc
Q 002896 592 ILRRNQLF 599 (869)
Q Consensus 592 ~L~~n~l~ 599 (869)
+|+.|.++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=2e-06 Score=85.00 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=53.6
Q ss_pred CCCCeeeCcCCcCCccc-chhhhcccccccccccccccCCch-hhhhcCCCCCcEEeCCCCCCCCCcchh------hhcC
Q 002896 634 VKLHYLNLSTNQFIQEI-PIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSDFIPRC------FEEM 705 (869)
Q Consensus 634 ~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l 705 (869)
+++..+.+..|.+.... ......++.+..|+|+.|+|.... -+++..+++|..|.+++|++....... ++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 46667777777665433 234566777778888888884432 366778888888888888887653321 3566
Q ss_pred CCCcEEEcc
Q 002896 706 NGLLYIDIS 714 (869)
Q Consensus 706 ~~L~~L~ls 714 (869)
++++.|+=|
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 667766544
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.5e-07 Score=92.80 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=39.0
Q ss_pred cccEEEccCCccccc-cChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCC
Q 002896 396 NLAILYLHSNTLLGS-IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDN 453 (869)
Q Consensus 396 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 453 (869)
.|+++||+...++.. +-..+..|.+|+.|.+.++++.+.+...++.-.+|+.++++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 577777777766532 2234566777777777777777777766777777777777665
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=1.5e-06 Score=75.87 Aligned_cols=107 Identities=28% Similarity=0.319 Sum_probs=72.6
Q ss_pred CCEEEccCCcccccCCc---ccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeee
Q 002896 564 LHVIDLSANHIIGKIPS---EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 640 (869)
Q Consensus 564 L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 640 (869)
+-.+||++|.+. .+++ .+.....|+..+|++|.+....+..-..++.++.|++++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344556666553 2222 2344556666677777776554444445667888888888888 5677788888999999
Q ss_pred CcCCcCCcccchhhhcccccccccccccccCCc
Q 002896 641 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE 673 (869)
Q Consensus 641 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 673 (869)
++.|++... |..+..+.+|-.|+..+|.+...
T Consensus 107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccCccccc-hHHHHHHHhHHHhcCCCCccccC
Confidence 999888544 45555688888888888888433
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=1.1e-06 Score=85.75 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCCcccc----cCCcCCCCCCCCcEEeCCCCCCCCC----CC-------CCCCCCCcCCcccCCCccCCCC
Q 002896 82 GRVNSINLTNVNQIFG----IIPPQIGNISKLKYLDLSSNSFSGT----IP-------PQIGNLSMLKFLYLSANQFSGR 146 (869)
Q Consensus 82 ~~v~~l~l~~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~~~~~----~p-------~~l~~l~~L~~L~Ls~n~~~~~ 146 (869)
..++.++|+|+. +.. .+...+.+-++|+..++++- ++|. ++ .++-+|++|+..+||+|.|...
T Consensus 30 d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356778887765 432 23345566677777777653 2222 22 3456778888888888877665
Q ss_pred CCcc----cCCCCCCCEEEcCCCCCC
Q 002896 147 IPPQ----IGHLSYIEALHLFKNQLS 168 (869)
Q Consensus 147 ~p~~----l~~l~~L~~L~L~~n~l~ 168 (869)
.|.. +++-+.|.+|.+++|.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 5543 355677777877777654
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=4.6e-05 Score=81.48 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=72.8
Q ss_pred cCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccc
Q 002896 534 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE 613 (869)
Q Consensus 534 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 613 (869)
+..|.+++.|++++|.++. +|. -.++|++|++++|.-...+|..+. ++|+.|++++|.....+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence 3456788888888886653 341 234688888887654445565442 577777777773322333 2455
Q ss_pred ccccccccccccccccccCC-CCCCeeeCcCCcCC--cccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896 614 YLDLSSNRLSNSIPRSLGNL-VKLHYLNLSTNQFI--QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690 (869)
Q Consensus 614 ~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 690 (869)
.|+++.+.... +..+ ++|+.|.+.+++.. ..+|.. --++|++|++++|... ..|+.+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 56665554321 1112 24556666433211 111110 1146777777766653 2333222 466777766
Q ss_pred CC
Q 002896 691 HN 692 (869)
Q Consensus 691 ~N 692 (869)
.|
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=3.1e-05 Score=54.92 Aligned_cols=37 Identities=49% Similarity=0.788 Sum_probs=17.8
Q ss_pred ccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696 (869)
Q Consensus 659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 696 (869)
+|++|++++|+|+ .+|..++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 3455555555553 233345555555555555555553
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00013 Score=78.18 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=7.9
Q ss_pred CCCCcEEecCCCcCc
Q 002896 466 LVKLTMLTLSDNQLQ 480 (869)
Q Consensus 466 l~~L~~L~Ls~n~l~ 480 (869)
+..++.|++++|.+.
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 455555555555443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.68 E-value=5.7e-06 Score=80.79 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=21.2
Q ss_pred ccCCCCCcEEecCCCcCcCCCC-----CcCCCCCCCEEECcCCcC
Q 002896 463 LGNLVKLTMLTLSDNQLQGSIP-----NLRNLTNLIRLRLNRNHL 502 (869)
Q Consensus 463 ~~~l~~L~~L~Ls~n~l~~~~~-----~l~~l~~L~~L~l~~n~l 502 (869)
+..|++|+.++||+|-+....| .++.-+.|++|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3445555555555555544333 234555666666666654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=7.4e-05 Score=53.00 Aligned_cols=36 Identities=39% Similarity=0.563 Sum_probs=17.1
Q ss_pred CCCeeeCcCCcCCcccchhhhcccccccccccccccC
Q 002896 635 KLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 671 (869)
Q Consensus 635 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 671 (869)
+|++|++++|+++. +|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 44555555555542 3334555555555555555553
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00021 Score=67.26 Aligned_cols=106 Identities=25% Similarity=0.225 Sum_probs=72.8
Q ss_pred CccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCch-hhhhcCCCCCcEE
Q 002896 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI-PSQICNMRSLEML 687 (869)
Q Consensus 609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 687 (869)
..+...+||++|.+... ..|..++.|.+|.|++|+|+..-|.--.-++.|+.|.|.+|.|.... -+-+..+|.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34566778888877533 36777788888888888887777766666677888888888774332 1335677888888
Q ss_pred eCCCCCCCCCcc---hhhhcCCCCcEEEccCC
Q 002896 688 NLSHNNLSDFIP---RCFEEMNGLLYIDISYN 716 (869)
Q Consensus 688 ~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N 716 (869)
.+-+|+.+..-- -.+..+++|+.||++.-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888887765421 23456677888877654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=7.2e-05 Score=87.14 Aligned_cols=106 Identities=23% Similarity=0.357 Sum_probs=52.0
Q ss_pred CcCCcccCCCcc-CCCCCCcccC-CCCCCCEEEcCCCCCCCC-CCccccCCCcCceeeccCcccCCCCCCccccccccce
Q 002896 131 SMLKFLYLSANQ-FSGRIPPQIG-HLSYIEALHLFKNQLSGP-IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAI 207 (869)
Q Consensus 131 ~~L~~L~Ls~n~-~~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 207 (869)
.+|++||+++.. +...-|..++ .++.|+.|.+++-.+... .-....++++|+.||+++++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 356667776654 2223333443 356666666665444321 112234556666666666655533 44555555555
Q ss_pred eeccccCCCC-CCCccccCCCCCCEEEccCCc
Q 002896 208 LYLHNNSLSG-SIPSEIGNLKSLSSLALGNNK 238 (869)
Q Consensus 208 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~ 238 (869)
|.+.+=.+.. ..-..+.++++|++||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 5555443332 111234445555555555443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=7.6e-05 Score=86.95 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=49.5
Q ss_pred CcccceeeccCcccccc-CcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCc-ccchhhhccccccc
Q 002896 585 LSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ-EIPIKLEKLIHLSE 662 (869)
Q Consensus 585 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~ 662 (869)
+|+|+.|.+++=.+... ....+.++++|..||+|+.+++.. ..++++++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 44444444444333211 122233455555555555555433 344555555555554443332 22233445555555
Q ss_pred ccccccccCCch--h----hhhcCCCCCcEEeCCCCCCCCC
Q 002896 663 LDLSHNFLGKEI--P----SQICNMRSLEMLNLSHNNLSDF 697 (869)
Q Consensus 663 L~Ls~N~l~~~~--p----~~l~~l~~L~~L~Ls~N~l~~~ 697 (869)
||+|..+..... . +.-..+|.|+.||.|+..+.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 555554432211 1 1222355666666665555543
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.17 E-value=0.00089 Score=61.13 Aligned_cols=14 Identities=14% Similarity=0.598 Sum_probs=4.8
Q ss_pred CcCCCCCCcEEEcc
Q 002896 533 DWGKCPNLGTFDVS 546 (869)
Q Consensus 533 ~~~~~~~L~~L~ls 546 (869)
.|..+++|+.+.+.
T Consensus 30 ~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 30 AFSNCTSLKSINFP 43 (129)
T ss_dssp TTTT-TT-SEEEES
T ss_pred hccccccccccccc
Confidence 33334344444433
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.14 E-value=0.00058 Score=62.37 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=35.6
Q ss_pred ccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCC
Q 002896 604 SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683 (869)
Q Consensus 604 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 683 (869)
..|.++++|+.+++.++ +......+|.++++|+.+.+.+ .+.......|..+++|+.+++..+ +.......|.+. .
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 33444444555554443 3333334455555555555543 322222334444555555555443 333444445554 5
Q ss_pred CcEEeCCCCCCCCCcchhhhcCCCC
Q 002896 684 LEMLNLSHNNLSDFIPRCFEEMNGL 708 (869)
Q Consensus 684 L~~L~Ls~N~l~~~~p~~l~~l~~L 708 (869)
|+.+.+.. .+..+....|.++++|
T Consensus 105 l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 105 LKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp --EEE-TT-B-SS----GGG-----
T ss_pred ceEEEECC-CccEECCccccccccC
Confidence 55555554 3444444555554444
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.001 Score=62.83 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=51.1
Q ss_pred CccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcC--CCCCcCCCCCCCEEECcC
Q 002896 422 FELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG--SIPNLRNLTNLIRLRLNR 499 (869)
Q Consensus 422 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~l~~ 499 (869)
..+|+++|.+.. ...|..++.|..|.+.+|+++..-|.--.-+++|+.|.+.+|.+.. .+..+..|+.|++|.+-+
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 344444444432 1224445555555555555555444444445556666666666543 223455666667776666
Q ss_pred CcCccccCc---cccCCCCCCEEeCCC
Q 002896 500 NHLTCNISE---SFGIHPKLTFIDLSH 523 (869)
Q Consensus 500 n~l~~~~~~---~~~~~~~L~~L~ls~ 523 (869)
|+++..... .+..+|+|+.||+..
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 665433211 234456666666554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00074 Score=66.64 Aligned_cols=102 Identities=25% Similarity=0.315 Sum_probs=51.7
Q ss_pred ccccccccccccccccccccccCCCCCCeeeCcCC--cCCcccchhhhcccccccccccccccCCc-hhhhhcCCCCCcE
Q 002896 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN--QFIQEIPIKLEKLIHLSELDLSHNFLGKE-IPSQICNMRSLEM 686 (869)
Q Consensus 610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 686 (869)
..|+.|.+.+..++.. ..|..+++|+.|++|.| +..+..+.....+++|++|+++.|++... --..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3444444444444322 23445556666666666 44444444444556666666666666321 0112334555666
Q ss_pred EeCCCCCCCCCc---chhhhcCCCCcEEEc
Q 002896 687 LNLSHNNLSDFI---PRCFEEMNGLLYIDI 713 (869)
Q Consensus 687 L~Ls~N~l~~~~---p~~l~~l~~L~~L~l 713 (869)
||+.+|.-+... ...|.-+++|+++|-
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccc
Confidence 777766665532 133445566666643
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00075 Score=66.61 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=37.9
Q ss_pred cccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCc--cCCCCCCcccCCCCCCCEEEcCCCCCC
Q 002896 96 FGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSAN--QFSGRIPPQIGHLSYIEALHLFKNQLS 168 (869)
Q Consensus 96 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~l~ 168 (869)
.|.+....-.+..|+.|++.+..++.. ..+-.|++|++|.+|.| ++.+.++.-...+++|++|++++|.+.
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334444444555566666555544311 23445566777777777 444444444444566666666666554
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.71 E-value=4.6e-05 Score=79.34 Aligned_cols=106 Identities=19% Similarity=0.083 Sum_probs=54.6
Q ss_pred CCCeeecccccccCCCC--CcccCCCCCCeEeccCCccccc-cCCCC-cCccccceeeccCC-cCCCCCcc-ccCCCCCC
Q 002896 300 NLDTLYLYTNSLSGSIP--SEIGNLKSLSGLELADNELSSS-IPHYL-GNLTNLAAFYLYKN-SLSGSIPS-EIGNLKSL 373 (869)
Q Consensus 300 ~L~~L~L~~n~~~~~~p--~~l~~l~~L~~L~Ls~n~l~~~-~~~~l-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L 373 (869)
.|+.|.+.++.-.+.-+ ....++++++.|++.++..... .-..+ ..+++|+.+++..| .++...-. -...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57778887775443322 2245678888887777652211 11111 23566777777663 33322222 22357777
Q ss_pred CEEEccCC-cCCCCC-CCCCCCCCcccEEEccCC
Q 002896 374 SNLDLSEN-KLSGSI-PHSLGNLTNLAILYLHSN 405 (869)
Q Consensus 374 ~~L~Ls~n-~l~~~~-~~~l~~l~~L~~L~L~~n 405 (869)
++|+++.| .+++.. ...+.++..++.+.+.+|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 77777777 344311 112234444555544444
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.66 E-value=9.9e-05 Score=76.91 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=20.4
Q ss_pred ccccccccccccccC-CchhhhhcCCCCCcEEeCCCCCC
Q 002896 657 LIHLSELDLSHNFLG-KEIPSQICNMRSLEMLNLSHNNL 694 (869)
Q Consensus 657 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l 694 (869)
+..|..+.|+++... ...-+.+..+++||.+++-.++-
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 344555666665542 22334455566777776666543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0012 Score=65.35 Aligned_cols=100 Identities=23% Similarity=0.221 Sum_probs=62.5
Q ss_pred CccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchh-hhhcCCCCCcEE
Q 002896 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEML 687 (869)
Q Consensus 609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 687 (869)
+.+.+.|++.+|.++++ .....++.|+.|.||-|+++..-| +..++.|++|+|..|.|..... .-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556666666666543 234566777777777777765433 6677777777777777754432 345677777777
Q ss_pred eCCCCCCCCCcch-----hhhcCCCCcEEE
Q 002896 688 NLSHNNLSDFIPR-----CFEEMNGLLYID 712 (869)
Q Consensus 688 ~Ls~N~l~~~~p~-----~l~~l~~L~~L~ 712 (869)
-|..|.=.|.-+. .+.-+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777776665443 244566666664
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.01 E-value=0.00058 Score=78.37 Aligned_cols=35 Identities=23% Similarity=0.107 Sum_probs=17.3
Q ss_pred CCcCCcccCCCccCCCC--CCcccCCCCCCCEEEcCC
Q 002896 130 LSMLKFLYLSANQFSGR--IPPQIGHLSYIEALHLFK 164 (869)
Q Consensus 130 l~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~L~~ 164 (869)
++.|+.|.+.++.-... +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566666655542222 122334555666666655
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.0015 Score=64.52 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc
Q 002896 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 598 (869)
Q Consensus 539 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 598 (869)
+.+.|++.++.++++ .....++.|++|.||-|+++..- .+..|++|++|+|+.|.+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccc
Confidence 334444444444322 11223444444444444444322 133444444444444443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.11 E-value=0.00059 Score=76.14 Aligned_cols=87 Identities=26% Similarity=0.272 Sum_probs=45.2
Q ss_pred CCCCCeeeCcCCcCCccc----chhhhcccc-cccccccccccCCc----hhhhhcCC-CCCcEEeCCCCCCCCCcc---
Q 002896 633 LVKLHYLNLSTNQFIQEI----PIKLEKLIH-LSELDLSHNFLGKE----IPSQICNM-RSLEMLNLSHNNLSDFIP--- 699 (869)
Q Consensus 633 l~~L~~L~Ls~N~l~~~~----p~~l~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p--- 699 (869)
..++++|++++|.++... ...+...++ +..|++.+|.+... ....+..+ ..++.++++.|.++..-.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 455566666666554221 112333344 55566666666433 22333444 556666666666665433
Q ss_pred -hhhhcCCCCcEEEccCCccc
Q 002896 700 -RCFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 700 -~~l~~l~~L~~L~ls~N~l~ 719 (869)
..+..+..++.+.+++|++.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 33344456666666766664
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.94 E-value=0.0016 Score=74.84 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=17.3
Q ss_pred ccEEEccCCccccccC-hhhhC-CCCCCccccCCCcC
Q 002896 397 LAILYLHSNTLLGSIP-REIGN-LKSLFELQLGDNKL 431 (869)
Q Consensus 397 L~~L~L~~n~l~~~~~-~~~~~-l~~L~~L~Ls~n~l 431 (869)
++.|+++.+.....-. ..... +..+..+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 6666666665432111 11111 55566676666544
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.70 E-value=0.00057 Score=76.29 Aligned_cols=188 Identities=27% Similarity=0.271 Sum_probs=101.2
Q ss_pred CCCEEECcCCcCccccC----ccccCCCCCCEEeCCCCcccccCCc----CcCCC-CCCcEEEccCCCCCCCCCcCcCCC
Q 002896 491 NLIRLRLNRNHLTCNIS----ESFGIHPKLTFIDLSHNNFYGQISS----DWGKC-PNLGTFDVSVNNIIGSLPPEIGDS 561 (869)
Q Consensus 491 ~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~ls~n~l~~~~p~~l~~l 561 (869)
.+..+.+.+|.+..... ..+...+.|+.|+++.|.+.+.-.. .+... ..+++|++..|.+++..-
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------ 161 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------ 161 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch------
Confidence 36677777777654322 2234455666666666666422111 11111 334444444444433211
Q ss_pred CCCCEEEccCCcccccCCcccccCcccceeeccCccccc----cCcc----cccCCcccccccccccccccc----cccc
Q 002896 562 SQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG----QLPS----ELGSLIQLEYLDLSSNRLSNS----IPRS 629 (869)
Q Consensus 562 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----~~~~----~~~~l~~L~~L~Ls~n~l~~~----~~~~ 629 (869)
+.+...+.....++.++++.|.+.. .++. .+....++++|++++|.++.. ....
T Consensus 162 --------------~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 162 --------------APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred --------------HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 1122233334455555555554410 1112 223466777778877776531 1123
Q ss_pred ccCCCC-CCeeeCcCCcCCcc----cchhhhcc-cccccccccccccCCch----hhhhcCCCCCcEEeCCCCCCCCCc
Q 002896 630 LGNLVK-LHYLNLSTNQFIQE----IPIKLEKL-IHLSELDLSHNFLGKEI----PSQICNMRSLEMLNLSHNNLSDFI 698 (869)
Q Consensus 630 ~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~ 698 (869)
+...++ +..|++++|++... ....+..+ ..+++++++.|.|+... .+.+..++.+++|.+++|.+....
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 444455 66688888887543 22334444 56788888888887653 455567778888999998887653
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.37 E-value=0.0096 Score=35.00 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=5.0
Q ss_pred CCcccCCCccCC
Q 002896 133 LKFLYLSANQFS 144 (869)
Q Consensus 133 L~~L~Ls~n~~~ 144 (869)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.18 E-value=0.016 Score=34.07 Aligned_cols=9 Identities=67% Similarity=0.575 Sum_probs=3.3
Q ss_pred ccccccccc
Q 002896 662 ELDLSHNFL 670 (869)
Q Consensus 662 ~L~Ls~N~l 670 (869)
+|||++|++
T Consensus 4 ~Ldls~n~l 12 (22)
T PF00560_consen 4 YLDLSGNNL 12 (22)
T ss_dssp EEEETSSEE
T ss_pred EEECCCCcC
Confidence 333333333
No 76
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=91.78 E-value=0.017 Score=53.52 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=42.3
Q ss_pred cCcCHHH-HHHHhcCCCcccccchh--h-------------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896 818 GKIVYEE-IIRQRMVLMMSTALEKV--D-------------KEVYTKLIYLLEKSLQ-----SRNFIRHS 866 (869)
Q Consensus 818 ~~isy~~-~~~a~~~~~~~~~Le~~--~-------------~~i~~~i~~~~~~s~~-----s~~fl~~~ 866 (869)
+||+|+. .|+.|+..++.|.||+. + ..+.++|.++|++|++ |++|++.+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~ 70 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSE 70 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHT
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeeccccccc
Confidence 5789988 78999999999999999 5 5789999999999999 99998764
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.34 E-value=0.0068 Score=58.52 Aligned_cols=88 Identities=22% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcC
Q 002896 102 QIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSL 181 (869)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 181 (869)
.+..+...+.||++.|.+. .+-..|+-++.|..||++.|.+. ..|..++.+..++++++..|..+ ..|.+++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4666777888888888765 34455667778888888888776 67777777777777777777766 566777777777
Q ss_pred ceeeccCcccC
Q 002896 182 NELALTSNFLK 192 (869)
Q Consensus 182 ~~L~L~~n~l~ 192 (869)
+++++..|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777766543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.60 E-value=0.32 Score=29.83 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=15.4
Q ss_pred CCCCcEEeCCCCCCCCCcchhhh
Q 002896 681 MRSLEMLNLSHNNLSDFIPRCFE 703 (869)
Q Consensus 681 l~~L~~L~Ls~N~l~~~~p~~l~ 703 (869)
+++|++|+|++|+|+.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677777777777776555543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.60 E-value=0.32 Score=29.83 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=15.4
Q ss_pred CCCCcEEeCCCCCCCCCcchhhh
Q 002896 681 MRSLEMLNLSHNNLSDFIPRCFE 703 (869)
Q Consensus 681 l~~L~~L~Ls~N~l~~~~p~~l~ 703 (869)
+++|++|+|++|+|+.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677777777777776555543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.61 E-value=0.025 Score=54.74 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=59.8
Q ss_pred cCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcE
Q 002896 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM 686 (869)
Q Consensus 607 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 686 (869)
......+.||++.|++.. .-..|+-++.|..||++.|++ ...|..++++..+..+++..|.. ...|.+++..+.+++
T Consensus 39 ~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccch-hhCCccccccCCcch
Confidence 345566777777777653 223566667777788887775 45677777777777788777777 556777777777777
Q ss_pred EeCCCCCCC
Q 002896 687 LNLSHNNLS 695 (869)
Q Consensus 687 L~Ls~N~l~ 695 (869)
+++-.|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777654
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.03 E-value=0.42 Score=25.96 Aligned_cols=12 Identities=50% Similarity=0.733 Sum_probs=4.0
Q ss_pred CCcEEeCCCCCC
Q 002896 683 SLEMLNLSHNNL 694 (869)
Q Consensus 683 ~L~~L~Ls~N~l 694 (869)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 82
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.71 E-value=0.38 Score=52.27 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=41.0
Q ss_pred cCcCHHHHHHHhcCCCcccccchhh------------hhhhhhhhhHH----HHhcc----cccccccccCC
Q 002896 818 GKIVYEEIIRQRMVLMMSTALEKVD------------KEVYTKLIYLL----EKSLQ----SRNFIRHSQVR 869 (869)
Q Consensus 818 ~~isy~~~~~a~~~~~~~~~Le~~~------------~~i~~~i~~~~----~~s~~----s~~fl~~~~~~ 869 (869)
..++|.++.+||++|+..-.++.++ ..||++..+.- ++.+. ..+.++|||||
T Consensus 63 ~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv 134 (361)
T KOG1187|consen 63 RSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLV 134 (361)
T ss_pred ceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcc
Confidence 4579999999999999999999997 35777766442 23344 88899999997
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.28 E-value=1.2 Score=27.21 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=7.2
Q ss_pred CCCCeeeCcCCcCCc
Q 002896 634 VKLHYLNLSTNQFIQ 648 (869)
Q Consensus 634 ~~L~~L~Ls~N~l~~ 648 (869)
++|+.|+|++|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555433
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.28 E-value=1.2 Score=27.21 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=7.2
Q ss_pred CCCCeeeCcCCcCCc
Q 002896 634 VKLHYLNLSTNQFIQ 648 (869)
Q Consensus 634 ~~L~~L~Ls~N~l~~ 648 (869)
++|+.|+|++|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.16 E-value=0.52 Score=28.20 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=4.1
Q ss_pred CCCeeeCcCCcC
Q 002896 635 KLHYLNLSTNQF 646 (869)
Q Consensus 635 ~L~~L~Ls~N~l 646 (869)
+|+.|+|++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.57 E-value=0.62 Score=44.63 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=15.2
Q ss_pred ccccccccccccccccccccCCCCCCeeeCcCCc
Q 002896 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 645 (869)
Q Consensus 612 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 645 (869)
++.+|-++..|.+..-+.+.++++++.|.+.++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 3444444444444433344444444444444443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.48 E-value=0.56 Score=44.97 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=41.3
Q ss_pred CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCC--CcCcCCCCCCCEEEccCC-cccccCCcccccCccccee
Q 002896 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL--PPEIGDSSQLHVIDLSAN-HIIGKIPSEIGKLSSLIKL 591 (869)
Q Consensus 515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~--p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 591 (869)
.++.+|-++..+..+--..+..++.++.|.+.++.--+.. ...-+-.++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666665554445555666666665555422110 000012456777777766 4554333445555666666
Q ss_pred eccC
Q 002896 592 ILRR 595 (869)
Q Consensus 592 ~L~~ 595 (869)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 88
>PF15102 TMEM154: TMEM154 protein family
Probab=73.88 E-value=2.3 Score=38.41 Aligned_cols=8 Identities=38% Similarity=0.833 Sum_probs=3.7
Q ss_pred EEEehHHH
Q 002896 766 WVVIVFPL 773 (869)
Q Consensus 766 ~~~i~~~~ 773 (869)
+++|+++.
T Consensus 58 iLmIlIP~ 65 (146)
T PF15102_consen 58 ILMILIPL 65 (146)
T ss_pred EEEEeHHH
Confidence 44444453
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=73.61 E-value=2.3 Score=56.31 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=33.7
Q ss_pred eCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896 688 NLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726 (869)
Q Consensus 688 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~ 726 (869)
||++|+|+.+.+..|..+.+|+.|+|++|||.|.|.-.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W 39 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR 39 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence 678888988888889999999999999999999988544
No 90
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=72.95 E-value=2.2 Score=29.06 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=3.5
Q ss_pred EEehHHHH
Q 002896 767 VVIVFPLL 774 (869)
Q Consensus 767 ~~i~~~~~ 774 (869)
..++++++
T Consensus 15 ~~VvVPV~ 22 (40)
T PF08693_consen 15 VGVVVPVG 22 (40)
T ss_pred EEEEechH
Confidence 34444444
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=70.39 E-value=2.7 Score=37.15 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=10.4
Q ss_pred EEEehHHHHHHHHHHHHHHHHHHHHhhchh
Q 002896 766 WVVIVFPLLGTVALLISLIALFFIFRRRKN 795 (869)
Q Consensus 766 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (869)
+++|++++++.+ +.++++++|+++|+||+
T Consensus 66 i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGV-IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 334444443333 22223333444444443
No 92
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=68.81 E-value=6.6 Score=26.32 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=3.3
Q ss_pred EehHHHHHH
Q 002896 768 VIVFPLLGT 776 (869)
Q Consensus 768 ~i~~~~~~~ 776 (869)
.+++++++.
T Consensus 7 aIIv~V~vg 15 (38)
T PF02439_consen 7 AIIVAVVVG 15 (38)
T ss_pred hHHHHHHHH
Confidence 333333333
No 93
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=67.95 E-value=1.9 Score=39.21 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=9.1
Q ss_pred cceEEEehHHHHHHH
Q 002896 763 RKIWVVIVFPLLGTV 777 (869)
Q Consensus 763 ~~~~~~i~~~~~~~~ 777 (869)
..+++.+++++++.+
T Consensus 48 knIVIGvVVGVGg~i 62 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPI 62 (154)
T ss_pred ccEEEEEEecccHHH
Confidence 456666666665555
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.58 E-value=5.2 Score=24.57 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=9.8
Q ss_pred CCCcEEeCCCCCCCC
Q 002896 682 RSLEMLNLSHNNLSD 696 (869)
Q Consensus 682 ~~L~~L~Ls~N~l~~ 696 (869)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456677777776654
No 95
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=62.76 E-value=7.9 Score=39.16 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=5.7
Q ss_pred HHHHHHHhhchhh
Q 002896 784 IALFFIFRRRKNA 796 (869)
Q Consensus 784 ~~~~~~~~~~~~~ 796 (869)
++++|++|||+..
T Consensus 277 iLYiWlyrrRK~s 289 (295)
T TIGR01478 277 ILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHhhccc
Confidence 3344444444443
No 96
>PTZ00370 STEVOR; Provisional
Probab=62.56 E-value=7.9 Score=39.25 Aligned_cols=11 Identities=45% Similarity=0.981 Sum_probs=4.9
Q ss_pred HHHHHHhhchh
Q 002896 785 ALFFIFRRRKN 795 (869)
Q Consensus 785 ~~~~~~~~~~~ 795 (869)
+++|++|||++
T Consensus 274 lYiwlyrrRK~ 284 (296)
T PTZ00370 274 LYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHhhcc
Confidence 34444444443
No 97
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=61.66 E-value=7.1 Score=33.06 Aligned_cols=10 Identities=10% Similarity=-0.054 Sum_probs=4.2
Q ss_pred ceEEEehHHH
Q 002896 764 KIWVVIVFPL 773 (869)
Q Consensus 764 ~~~~~i~~~~ 773 (869)
..+..|++++
T Consensus 66 gaiagi~vg~ 75 (96)
T PTZ00382 66 GAIAGISVAV 75 (96)
T ss_pred ccEEEEEeeh
Confidence 3444444433
No 98
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.59 E-value=36 Score=37.36 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=28.2
Q ss_pred cccccccccccCCchh---hhhcCCCCCcEEeCCCCCCCCC----cchhhhcCCCCcEEEccCCc
Q 002896 660 LSELDLSHNFLGKEIP---SQICNMRSLEMLNLSHNNLSDF----IPRCFEEMNGLLYIDISYNE 717 (869)
Q Consensus 660 L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~ 717 (869)
+..+.++.|.+..... ..+..-+.+..|++++|..... +|..++.-.+++.+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 4445555555532221 2223445566666666655432 34444444455555555554
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.11 E-value=9.1 Score=23.90 Aligned_cols=15 Identities=53% Similarity=0.689 Sum_probs=9.9
Q ss_pred CCCcEEeCCCCCCCC
Q 002896 682 RSLEMLNLSHNNLSD 696 (869)
Q Consensus 682 ~~L~~L~Ls~N~l~~ 696 (869)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456777777777654
No 100
>PF15050 SCIMP: SCIMP protein
Probab=57.11 E-value=6.7 Score=33.68 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=6.4
Q ss_pred CcCHHHHHHHhc
Q 002896 819 KIVYEEIIRQRM 830 (869)
Q Consensus 819 ~isy~~~~~a~~ 830 (869)
..+|+-.-++++
T Consensus 93 patYS~vnk~r~ 104 (133)
T PF15050_consen 93 PATYSLVNKVRN 104 (133)
T ss_pred CchhhhhHhhcc
Confidence 355766654443
No 101
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.26 E-value=37 Score=37.28 Aligned_cols=105 Identities=18% Similarity=-0.034 Sum_probs=56.7
Q ss_pred ccccccccccccc-cccccCCCCCCeeeCcCCcCCcccchhh--hcccccccccccccccC-Cchhhhh--------cCC
Q 002896 614 YLDLSSNRLSNSI-PRSLGNLVKLHYLNLSTNQFIQEIPIKL--EKLIHLSELDLSHNFLG-KEIPSQI--------CNM 681 (869)
Q Consensus 614 ~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~-~~~p~~l--------~~l 681 (869)
++|+..|...+.- -++-.+=..+++|+++.|.+.++..... ..-++.+.+++..-.-. -.++... ..-
T Consensus 333 rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~ 412 (553)
T KOG4242|consen 333 RLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTH 412 (553)
T ss_pred cCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhccc
Confidence 4666666554311 1111222347888888888766554332 33345555655432210 0011100 122
Q ss_pred CCCcEEeCCCCCCCCCcch---hhhcCCCCcEEEccCCcc
Q 002896 682 RSLEMLNLSHNNLSDFIPR---CFEEMNGLLYIDISYNEL 718 (869)
Q Consensus 682 ~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~ls~N~l 718 (869)
.-++.+.++.|.+...... .+..-+.+..+++++|.-
T Consensus 413 g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 413 GVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 3477889999988765433 334457899999999964
No 102
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=52.74 E-value=5.8 Score=34.61 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCC
Q 002896 742 LCGDIKGFQSCKA 754 (869)
Q Consensus 742 lc~~~~~~~~C~~ 754 (869)
.|...|..+.|..
T Consensus 54 sC~~~P~S~~C~~ 66 (129)
T PF12191_consen 54 SCPAYPKSPFCQG 66 (129)
T ss_dssp CHCC-TT-CCCCC
T ss_pred cCCCCCCCccccC
Confidence 3444455555543
No 103
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=52.08 E-value=3.7 Score=37.61 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred ccccCcCHHH---HHHHhcCCCcccccchhh-----------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896 815 TFEGKIVYEE---IIRQRMVLMMSTALEKVD-----------KEVYTKLIYLLEKSLQ-----SRNFIRHS 866 (869)
Q Consensus 815 ~~~~~isy~~---~~~a~~~~~~~~~Le~~~-----------~~i~~~i~~~~~~s~~-----s~~fl~~~ 866 (869)
+||+||||+. .+++++. .+...++..+ ....+.|.+.|++|++ |++|++..
T Consensus 1 ~~dvFISys~~~~~~~~~v~-~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~ 70 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLS-HLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESE 70 (140)
T ss_pred CCeEEEECCCCHHHHHHHHH-HHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccCh
Confidence 4789999986 3433332 1122222211 2223388899999887 88888754
No 104
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=51.84 E-value=8.4 Score=30.92 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=10.5
Q ss_pred cccccCcCHHHHHHHhcCCC
Q 002896 814 LTFEGKIVYEEIIRQRMVLM 833 (869)
Q Consensus 814 ~~~~~~isy~~~~~a~~~~~ 833 (869)
..|-..-||+|=-+|.-.|.
T Consensus 51 ktYIDP~TYEDP~qAV~eFA 70 (75)
T PF14575_consen 51 KTYIDPHTYEDPNQAVREFA 70 (75)
T ss_dssp -----GGGSSSHHHHHHHCS
T ss_pred eeecCcccccCHHHHHHHHH
Confidence 44545567888777776554
No 105
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=49.69 E-value=12 Score=23.00 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=8.5
Q ss_pred CCcEEeCCCCCCCC
Q 002896 683 SLEMLNLSHNNLSD 696 (869)
Q Consensus 683 ~L~~L~Ls~N~l~~ 696 (869)
+|+.|++++|+|+.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45666666666655
No 106
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=45.19 E-value=25 Score=38.55 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=17.2
Q ss_pred hhhhhhhhhHHHH-hcc------cccccccccCC
Q 002896 843 KEVYTKLIYLLEK-SLQ------SRNFIRHSQVR 869 (869)
Q Consensus 843 ~~i~~~i~~~~~~-s~~------s~~fl~~~~~~ 869 (869)
+.||+||..--++ |+. +.=-++|.|+|
T Consensus 234 ~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl 267 (534)
T KOG3653|consen 234 RLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENIL 267 (534)
T ss_pred ceeEEEecCHHHHHHHHhHHHHHhccCccchhHH
Confidence 6688888854444 333 55567787764
No 107
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=43.83 E-value=46 Score=32.43 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=4.0
Q ss_pred HHHHHHHhhc
Q 002896 784 IALFFIFRRR 793 (869)
Q Consensus 784 ~~~~~~~~~~ 793 (869)
.++|++.||.
T Consensus 120 ~~Y~~~~Rrs 129 (202)
T PF06365_consen 120 AGYCCHQRRS 129 (202)
T ss_pred HHHHhhhhcc
Confidence 3344444433
No 108
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.62 E-value=22 Score=37.09 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 002896 770 VFPLLGTV 777 (869)
Q Consensus 770 ~~~~~~~~ 777 (869)
++++++++
T Consensus 262 iiaIliIV 269 (299)
T PF02009_consen 262 IIAILIIV 269 (299)
T ss_pred HHHHHHHH
Confidence 33343333
No 109
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=42.62 E-value=32 Score=23.45 Aligned_cols=6 Identities=17% Similarity=0.290 Sum_probs=2.3
Q ss_pred HHHHhh
Q 002896 787 FFIFRR 792 (869)
Q Consensus 787 ~~~~~~ 792 (869)
+.|+|+
T Consensus 28 ~iYRKw 33 (43)
T PF08114_consen 28 FIYRKW 33 (43)
T ss_pred HHHHHH
Confidence 334433
No 110
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=41.21 E-value=8.9 Score=29.20 Aligned_cols=10 Identities=60% Similarity=1.125 Sum_probs=0.4
Q ss_pred HHHHHhhchh
Q 002896 786 LFFIFRRRKN 795 (869)
Q Consensus 786 ~~~~~~~~~~ 795 (869)
.++.+|.|++
T Consensus 30 lf~iyR~rkk 39 (64)
T PF01034_consen 30 LFLIYRMRKK 39 (64)
T ss_dssp -------S--
T ss_pred HHHHHHHHhc
Confidence 3344444433
No 111
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=41.17 E-value=40 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=8.4
Q ss_pred CcceEEEehHHHHHHH
Q 002896 762 SRKIWVVIVFPLLGTV 777 (869)
Q Consensus 762 ~~~~~~~i~~~~~~~~ 777 (869)
...+++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVI 51 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVI 51 (221)
T ss_pred ceeeeeeeecchhhhH
Confidence 3455555555555444
No 112
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.21 E-value=22 Score=39.82 Aligned_cols=64 Identities=33% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCccccccccccccccccc--cccccCCCCCCeeeCcCCcCCcccchhhhcc--cccccccccccccC
Q 002896 608 SLIQLEYLDLSSNRLSNSI--PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKL--IHLSELDLSHNFLG 671 (869)
Q Consensus 608 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~ 671 (869)
+.+.+..++|++|++.... ...-...++|+.|+||+|...-....++..+ .-|++|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4556667777777764321 0011223566677777772211112223222 23555666666554
No 113
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.99 E-value=36 Score=30.77 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.4
Q ss_pred HHhhchhhh
Q 002896 789 IFRRRKNAL 797 (869)
Q Consensus 789 ~~~~~~~~~ 797 (869)
+++.+|+.+
T Consensus 20 ~~~~rRR~r 28 (130)
T PF12273_consen 20 YCHNRRRRR 28 (130)
T ss_pred HHHHHHHhh
Confidence 344555544
No 114
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=30.94 E-value=29 Score=33.80 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=9.4
Q ss_pred cceEEEehHHHHHHH
Q 002896 763 RKIWVVIVFPLLGTV 777 (869)
Q Consensus 763 ~~~~~~i~~~~~~~~ 777 (869)
....++|++++++++
T Consensus 156 ~~~~laI~lPvvv~~ 170 (189)
T PF14610_consen 156 GKYALAIALPVVVVV 170 (189)
T ss_pred cceeEEEEccHHHHH
Confidence 344667777776655
No 115
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.17 E-value=30 Score=38.79 Aligned_cols=62 Identities=29% Similarity=0.358 Sum_probs=32.9
Q ss_pred cCcccceeeccCccccccCc--ccccCCccccccccccc--cccccccccccCC--CCCCeeeCcCCcCC
Q 002896 584 KLSSLIKLILRRNQLFGQLP--SELGSLIQLEYLDLSSN--RLSNSIPRSLGNL--VKLHYLNLSTNQFI 647 (869)
Q Consensus 584 ~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l--~~L~~L~Ls~N~l~ 647 (869)
+.+.+..+.+++|++..... .--...+.|+.|+|++| .+.. ..++..+ ..|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 34566667777777643321 11223466777777777 2221 1122222 23667777777764
No 116
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=27.28 E-value=92 Score=41.36 Aligned_cols=28 Identities=18% Similarity=-0.075 Sum_probs=19.1
Q ss_pred cchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 698 IPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 698 ~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
.|-+...|..=..=+..+|.+.|.||.+
T Consensus 3904 epC~snPC~~GgtCip~~n~f~CnC~~g 3931 (4289)
T KOG1219|consen 3904 EPCASNPCLTGGTCIPFYNGFLCNCPNG 3931 (4289)
T ss_pred ccccCCCCCCCCEEEecCCCeeEeCCCC
Confidence 3444444555556778899999999965
No 117
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.77 E-value=41 Score=20.38 Aligned_cols=12 Identities=33% Similarity=0.199 Sum_probs=5.9
Q ss_pred CcCCcccCCCcc
Q 002896 131 SMLKFLYLSANQ 142 (869)
Q Consensus 131 ~~L~~L~Ls~n~ 142 (869)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555543
No 118
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=24.58 E-value=1e+02 Score=35.39 Aligned_cols=11 Identities=9% Similarity=0.601 Sum_probs=5.3
Q ss_pred cceEEEehHHH
Q 002896 763 RKIWVVIVFPL 773 (869)
Q Consensus 763 ~~~~~~i~~~~ 773 (869)
..+|+++.+++
T Consensus 267 ~NlWII~gVlv 277 (684)
T PF12877_consen 267 NNLWIIAGVLV 277 (684)
T ss_pred CCeEEEehHhH
Confidence 44555554433
No 119
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.18 E-value=1.1e+02 Score=25.07 Aligned_cols=10 Identities=30% Similarity=0.581 Sum_probs=3.8
Q ss_pred HHHHHHHhhc
Q 002896 784 IALFFIFRRR 793 (869)
Q Consensus 784 ~~~~~~~~~~ 793 (869)
++++.++++|
T Consensus 49 ilwfvCC~kR 58 (94)
T PF05393_consen 49 ILWFVCCKKR 58 (94)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 120
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.16 E-value=29 Score=37.78 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=19.2
Q ss_pred hhhhhhhhhHHHHhcc-------cccccccccC
Q 002896 843 KEVYTKLIYLLEKSLQ-------SRNFIRHSQV 868 (869)
Q Consensus 843 ~~i~~~i~~~~~~s~~-------s~~fl~~~~~ 868 (869)
..||+||..+-|..-+ .-.-|||+|+
T Consensus 235 e~VAVKiF~srdE~SWfrEtEIYqTvmLRHENI 267 (513)
T KOG2052|consen 235 EDVAVKIFSSRDERSWFRETEIYQTVMLRHENI 267 (513)
T ss_pred CceEEEEecccchhhhhhHHHHHHHHHhccchh
Confidence 5599999966655333 6677999997
No 121
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.54 E-value=53 Score=44.57 Aligned_cols=32 Identities=31% Similarity=0.277 Sum_probs=26.9
Q ss_pred eCcCCcCCcccchhhhcccccccccccccccC
Q 002896 640 NLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 671 (869)
Q Consensus 640 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 671 (869)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68889988887888888888999999988774
No 122
>PHA03265 envelope glycoprotein D; Provisional
Probab=23.17 E-value=91 Score=32.75 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=4.7
Q ss_pred HHHHHHHhhch
Q 002896 784 IALFFIFRRRK 794 (869)
Q Consensus 784 ~~~~~~~~~~~ 794 (869)
+++++++|+|+
T Consensus 366 ~il~~~~rr~k 376 (402)
T PHA03265 366 VILYVCLRRKK 376 (402)
T ss_pred HHHHHHhhhhh
Confidence 34444444443
No 123
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.72 E-value=62 Score=31.52 Aligned_cols=27 Identities=4% Similarity=0.337 Sum_probs=15.5
Q ss_pred cceEEEehHHHHHHHHHHHHHHHHHHH
Q 002896 763 RKIWVVIVFPLLGTVALLISLIALFFI 789 (869)
Q Consensus 763 ~~~~~~i~~~~~~~~~~~~~~~~~~~~ 789 (869)
...+-+++++++++++|++++++..+.
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHH
Confidence 445556666667777666655544433
No 124
>PF15069 FAM163: FAM163 family
Probab=21.07 E-value=1.2e+02 Score=27.63 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=8.1
Q ss_pred ehHHHHHHHHHHHHHHHHHH
Q 002896 769 IVFPLLGTVALLISLIALFF 788 (869)
Q Consensus 769 i~~~~~~~~~~~~~~~~~~~ 788 (869)
|..++.++++++.+++++++
T Consensus 8 ItGgILAtVILLcIIaVLCY 27 (143)
T PF15069_consen 8 ITGGILATVILLCIIAVLCY 27 (143)
T ss_pred EechHHHHHHHHHHHHHHHH
Confidence 33334444434444444443
No 125
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.02 E-value=67 Score=35.44 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=7.7
Q ss_pred CCCcceEEEehHHHHHH
Q 002896 760 PASRKIWVVIVFPLLGT 776 (869)
Q Consensus 760 ~~~~~~~~~i~~~~~~~ 776 (869)
+.+...+..|.++++++
T Consensus 363 ~LstgaIaGIsvavvvv 379 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVV 379 (397)
T ss_pred cccccceeeeeehhHHH
Confidence 33444555555444433
No 126
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.78 E-value=2.1e+02 Score=29.82 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=6.3
Q ss_pred cceEEEehHHHHHH
Q 002896 763 RKIWVVIVFPLLGT 776 (869)
Q Consensus 763 ~~~~~~i~~~~~~~ 776 (869)
...+++|.++++..
T Consensus 226 ~G~VVlIslAiALG 239 (281)
T PF12768_consen 226 RGFVVLISLAIALG 239 (281)
T ss_pred ceEEEEEehHHHHH
Confidence 34445554444333
No 127
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=20.38 E-value=28 Score=29.92 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHh
Q 002896 784 IALFFIFR 791 (869)
Q Consensus 784 ~~~~~~~~ 791 (869)
+.+|+++|
T Consensus 42 iGCWYckR 49 (118)
T PF14991_consen 42 IGCWYCKR 49 (118)
T ss_dssp --------
T ss_pred Hhheeeee
Confidence 34444443
Done!