Query 002896
Match_columns 869
No_of_seqs 975 out of 5763
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-95 1.3E-99 876.1 45.2 711 28-755 4-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 9.6E-76 3.3E-80 707.0 34.4 630 84-721 79-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-63 4.6E-68 596.4 48.1 597 110-724 7-627 (680)
4 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-64 5.3E-69 615.7 36.4 669 158-866 7-744 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-62 1.7E-66 582.7 48.1 577 98-698 18-625 (680)
6 3t6q_A CD180 antigen; protein- 100.0 4.6E-57 1.6E-61 532.5 39.2 537 110-726 15-567 (606)
7 3t6q_A CD180 antigen; protein- 100.0 9.6E-56 3.3E-60 521.3 41.9 533 98-699 26-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-56 1.5E-60 524.0 38.1 540 134-726 14-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-54 9.3E-59 508.9 36.9 524 98-673 25-560 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-54 1.1E-58 524.8 37.3 521 105-697 22-562 (844)
11 4eco_A Uncharacterized protein 100.0 1.1E-55 3.9E-60 519.8 21.6 501 34-575 28-600 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 3.5E-53 1.2E-57 505.3 28.9 484 32-598 265-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 4.4E-50 1.5E-54 469.7 31.0 511 183-728 11-540 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1.7E-48 5.7E-53 456.3 33.4 510 135-700 11-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2E-48 7E-53 453.2 26.3 491 205-729 7-520 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 7.4E-48 2.5E-52 448.5 25.8 491 70-603 3-514 (549)
17 4eco_A Uncharacterized protein 100.0 3.7E-48 1.3E-52 455.8 18.5 457 107-598 81-599 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-45 4.2E-50 438.1 35.4 526 146-725 45-586 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1E-46 3.5E-51 435.5 19.7 460 230-726 3-488 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 3.3E-46 1.1E-50 445.3 24.5 465 227-720 323-865 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-44 5.9E-49 428.2 36.0 564 98-697 45-630 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-45 6.4E-50 424.9 23.4 457 182-699 3-485 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-43 4.7E-48 412.6 20.5 465 226-727 30-518 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-42 2.4E-46 398.3 24.5 455 206-699 34-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 8.3E-42 2.8E-46 365.8 15.4 292 32-334 2-302 (313)
26 3v47_A TOLL-like receptor 5B a 100.0 1.9E-40 6.6E-45 376.3 24.6 386 326-729 13-418 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 4.6E-40 1.6E-44 373.3 26.0 360 107-480 30-408 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 6.6E-39 2.3E-43 360.3 29.4 425 130-656 10-438 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 8.7E-39 3E-43 359.4 30.1 416 101-584 5-438 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2E-36 7E-41 340.4 30.5 361 122-581 33-393 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 5.4E-37 1.8E-41 349.9 23.7 326 420-745 33-359 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.7E-36 1.3E-40 338.3 28.5 151 171-337 34-184 (457)
33 1o6v_A Internalin A; bacterial 100.0 1.6E-35 5.5E-40 336.1 30.5 346 321-720 44-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 1.6E-35 5.4E-40 336.1 30.2 345 106-481 45-389 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 4.5E-35 1.5E-39 334.1 27.6 311 98-410 25-335 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.4E-34 8.3E-39 318.8 20.3 312 104-457 42-353 (390)
37 3oja_B Anopheles plasmodium-re 100.0 8.7E-34 3E-38 331.7 25.7 332 395-745 51-383 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 1.3E-33 4.5E-38 312.9 25.5 333 394-745 44-377 (390)
39 3oja_B Anopheles plasmodium-re 100.0 8.5E-34 2.9E-38 331.8 22.0 312 105-458 49-360 (597)
40 4fmz_A Internalin; leucine ric 100.0 2.9E-32 9.8E-37 297.3 29.6 307 367-719 40-346 (347)
41 4fcg_A Uncharacterized protein 100.0 2.1E-34 7.1E-39 310.1 12.1 283 32-336 23-314 (328)
42 1ogq_A PGIP-2, polygalacturona 100.0 9.1E-34 3.1E-38 303.3 15.1 259 490-752 50-312 (313)
43 4fmz_A Internalin; leucine ric 100.0 3.8E-32 1.3E-36 296.3 28.1 307 343-695 40-346 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4E-35 282.3 25.9 288 108-430 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-30 7.5E-35 280.1 27.1 289 131-454 33-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 5E-30 1.7E-34 277.2 26.9 225 107-360 52-276 (330)
47 1xku_A Decorin; proteoglycan, 100.0 6.1E-30 2.1E-34 276.5 27.4 267 156-429 53-329 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-33 7.4E-38 319.0 -5.2 376 323-721 3-442 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 7.3E-33 2.5E-37 314.6 -4.0 355 347-721 3-413 (461)
50 2z66_A Variable lymphocyte rec 100.0 4.2E-29 1.4E-33 266.9 15.7 284 70-369 6-296 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 9.1E-29 3.1E-33 269.9 17.3 259 468-726 53-321 (353)
52 2z80_A TOLL-like receptor 2, v 100.0 2.2E-29 7.4E-34 274.9 11.1 281 67-386 26-316 (353)
53 3ogk_B Coronatine-insensitive 100.0 2.9E-31 1E-35 311.5 -4.4 393 321-714 110-546 (592)
54 3zyi_A Leucine-rich repeat-con 100.0 1.4E-27 4.8E-32 269.6 24.7 234 490-725 75-309 (452)
55 2z66_A Variable lymphocyte rec 100.0 2.7E-28 9.4E-33 260.6 17.7 234 490-724 28-266 (306)
56 4fcg_A Uncharacterized protein 100.0 4.4E-28 1.5E-32 260.7 18.6 226 130-360 80-314 (328)
57 3zyj_A Leucine-rich repeat-con 100.0 2E-27 6.9E-32 267.3 23.8 252 470-725 46-298 (440)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.3E-32 252.5 18.3 213 514-726 32-245 (285)
59 3ogk_B Coronatine-insensitive 99.9 3.8E-30 1.3E-34 302.0 -5.4 375 345-721 110-528 (592)
60 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-27 2.2E-31 247.1 19.9 253 470-725 14-267 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 2.6E-26 8.8E-31 259.3 24.0 242 110-356 57-299 (452)
62 1wwl_A Monocyte differentiatio 99.9 1.9E-28 6.5E-33 262.1 2.7 251 104-385 40-310 (312)
63 3zyj_A Leucine-rich repeat-con 99.9 9.5E-26 3.2E-30 253.7 24.0 235 98-336 57-292 (440)
64 2o6q_A Variable lymphocyte rec 99.9 1.5E-25 5E-30 234.4 21.8 217 68-288 2-218 (270)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4.2E-32 256.4 5.5 267 421-724 12-281 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-27 1.9E-31 251.4 8.1 264 398-674 13-279 (317)
67 1wwl_A Monocyte differentiatio 99.9 1.6E-27 5.5E-32 254.9 3.1 256 127-409 39-310 (312)
68 3oja_A Leucine-rich immune mol 99.9 1.3E-26 4.5E-31 262.9 9.8 245 442-723 33-286 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.7E-29 251.8 25.4 268 371-705 40-307 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 4.2E-25 1.4E-29 231.9 20.0 214 514-728 28-246 (276)
71 3g06_A SSPH2 (leucine-rich rep 99.9 8.8E-24 3E-28 244.2 27.6 269 347-658 40-308 (622)
72 2o6q_A Variable lymphocyte rec 99.9 3.3E-24 1.1E-28 224.1 21.3 208 515-725 17-224 (270)
73 2p1m_B Transport inhibitor res 99.9 2.2E-28 7.6E-33 287.1 -12.1 155 561-716 371-541 (594)
74 3oja_A Leucine-rich immune mol 99.9 1.2E-25 4E-30 255.1 9.5 237 417-666 32-270 (487)
75 2p1m_B Transport inhibitor res 99.9 8.5E-28 2.9E-32 282.2 -11.3 406 294-719 61-519 (594)
76 2z62_A TOLL-like receptor 4, v 99.9 1.7E-23 5.8E-28 219.7 19.2 209 490-699 28-241 (276)
77 1p9a_G Platelet glycoprotein I 99.9 2.8E-23 9.7E-28 218.8 17.9 205 512-723 8-212 (290)
78 3rfs_A Internalin B, repeat mo 99.9 4.6E-23 1.6E-27 215.6 17.7 206 104-320 38-243 (272)
79 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.5E-27 212.9 16.9 185 486-679 59-243 (272)
80 3m19_A Variable lymphocyte rec 99.9 9.2E-23 3.2E-27 210.6 16.0 183 539-724 15-197 (251)
81 3m19_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 206.6 18.3 191 69-265 3-193 (251)
82 2ca6_A RAN GTPase-activating p 99.9 1.7E-24 5.8E-29 239.2 0.8 236 488-723 30-320 (386)
83 1p9a_G Platelet glycoprotein I 99.9 8.6E-22 3E-26 207.5 20.1 201 103-310 6-206 (290)
84 4glp_A Monocyte differentiatio 99.9 3.8E-23 1.3E-27 220.8 9.7 202 514-720 91-308 (310)
85 2ast_B S-phase kinase-associat 99.9 6.2E-25 2.1E-29 238.0 -5.5 211 69-285 35-257 (336)
86 2xwt_C Thyrotropin receptor; s 99.9 3E-22 1E-26 205.2 12.7 197 515-717 32-237 (239)
87 3goz_A Leucine-rich repeat-con 99.9 6.8E-24 2.3E-28 231.9 -0.3 255 447-721 2-299 (362)
88 4glp_A Monocyte differentiatio 99.9 1.8E-22 6.2E-27 215.5 10.4 202 490-696 91-308 (310)
89 2ast_B S-phase kinase-associat 99.9 3.5E-23 1.2E-27 224.2 4.0 249 445-724 49-311 (336)
90 3goz_A Leucine-rich repeat-con 99.9 2E-23 6.9E-28 228.1 1.2 261 423-703 2-305 (362)
91 2ca6_A RAN GTPase-activating p 99.9 2.2E-23 7.7E-28 230.2 0.3 138 562-699 159-320 (386)
92 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.1E-26 205.9 16.2 191 514-720 41-231 (308)
93 2xwt_C Thyrotropin receptor; s 99.9 2.2E-21 7.5E-26 198.8 13.0 196 491-692 32-236 (239)
94 2o6s_A Variable lymphocyte rec 99.8 9.3E-21 3.2E-25 189.5 16.6 182 70-273 6-187 (208)
95 1h6u_A Internalin H; cell adhe 99.8 1.4E-20 4.6E-25 200.4 15.8 193 104-312 38-230 (308)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-20 3.9E-25 190.2 10.4 158 566-726 15-173 (220)
97 3cvr_A Invasion plasmid antige 99.8 1.7E-20 5.8E-25 214.0 13.0 208 57-322 33-253 (571)
98 4ay9_X Follicle-stimulating ho 99.8 3.9E-20 1.3E-24 200.9 13.8 243 71-333 9-256 (350)
99 2v9t_B SLIT homolog 2 protein 99.8 2.8E-20 9.4E-25 187.4 11.3 158 565-725 14-171 (220)
100 2o6s_A Variable lymphocyte rec 99.8 2.4E-19 8.1E-24 179.3 17.8 180 110-299 10-189 (208)
101 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.7E-24 198.2 12.7 181 541-724 21-207 (361)
102 3cvr_A Invasion plasmid antige 99.8 2.9E-19 1E-23 203.8 16.7 186 468-704 60-252 (571)
103 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 6E-24 195.8 13.7 222 490-716 30-256 (350)
104 3e6j_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 177.3 17.8 161 66-242 14-174 (229)
105 3e6j_A Variable lymphocyte rec 99.8 4.6E-19 1.6E-23 179.8 14.1 157 565-725 22-178 (229)
106 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.9E-23 181.8 14.6 170 537-720 45-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 3.3E-18 1.1E-22 172.1 13.5 156 541-699 14-170 (220)
108 1m9s_A Internalin B; cell inva 99.7 2.1E-18 7.1E-23 199.2 11.9 189 109-313 23-211 (605)
109 1h6t_A Internalin B; cell adhe 99.7 2.9E-18 9.9E-23 180.7 11.1 149 104-264 43-191 (291)
110 4b8c_D Glucose-repressible alc 99.7 1.3E-19 4.4E-24 214.8 0.8 219 34-268 130-358 (727)
111 2v9t_B SLIT homolog 2 protein 99.7 2.1E-17 7.1E-22 166.3 16.0 155 71-240 11-165 (220)
112 1w8a_A SLIT protein; signaling 99.7 2.2E-18 7.5E-23 169.5 8.4 135 611-745 30-165 (192)
113 1m9s_A Internalin B; cell inva 99.7 5.9E-18 2E-22 195.4 13.1 204 129-348 19-222 (605)
114 4ezg_A Putative uncharacterize 99.7 8.3E-18 2.8E-22 166.3 12.4 155 559-720 41-195 (197)
115 2xot_A Amphoterin-induced prot 99.7 8.2E-18 2.8E-22 183.3 13.4 157 540-696 41-203 (361)
116 4ezg_A Putative uncharacterize 99.7 1.8E-17 6E-22 163.9 10.7 154 536-696 42-195 (197)
117 4b8c_D Glucose-repressible alc 99.7 7.8E-18 2.7E-22 199.6 8.0 225 467-721 173-406 (727)
118 1xeu_A Internalin C; cellular 99.7 1.8E-17 6E-22 171.8 8.6 167 540-721 21-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 3.4E-17 1.2E-21 160.9 10.2 155 587-745 30-186 (192)
120 1dce_A Protein (RAB geranylger 99.7 8.7E-20 3E-24 209.5 -9.9 189 128-339 346-549 (567)
121 1dce_A Protein (RAB geranylger 99.7 5.1E-19 1.8E-23 203.1 -6.5 198 511-725 346-552 (567)
122 1xeu_A Internalin C; cellular 99.7 4.7E-17 1.6E-21 168.5 8.0 150 151-313 37-186 (263)
123 3sb4_A Hypothetical leucine ri 99.7 3.1E-17 1.1E-21 176.3 5.6 103 609-713 225-328 (329)
124 2wfh_A SLIT homolog 2 protein 99.7 1.1E-16 3.6E-21 157.3 8.3 115 610-725 31-145 (193)
125 2je0_A Acidic leucine-rich nuc 99.6 5.2E-16 1.8E-20 145.8 10.1 128 586-715 17-149 (149)
126 2ell_A Acidic leucine-rich nuc 99.6 5.5E-16 1.9E-20 148.9 9.9 133 586-720 24-161 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 149.0 9.5 134 562-697 24-162 (168)
128 3sb4_A Hypothetical leucine ri 99.6 2.8E-16 9.4E-21 169.0 7.6 221 298-544 100-327 (329)
129 2o6r_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 147.7 10.8 116 610-725 28-143 (177)
130 2je0_A Acidic leucine-rich nuc 99.6 6.9E-16 2.4E-20 144.9 7.7 126 563-690 18-148 (149)
131 4fs7_A Uncharacterized protein 99.6 3.4E-14 1.2E-18 156.7 19.7 60 339-400 63-122 (394)
132 4fs7_A Uncharacterized protein 99.6 1.7E-13 5.8E-18 151.1 23.8 238 365-639 156-393 (394)
133 4fdw_A Leucine rich hypothetic 99.6 9E-14 3.1E-18 152.4 20.8 264 419-718 113-382 (401)
134 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 141.1 11.5 132 565-699 10-141 (177)
135 2wfh_A SLIT homolog 2 protein 99.5 2.8E-14 9.7E-19 139.9 13.5 107 132-239 32-138 (193)
136 4fdw_A Leucine rich hypothetic 99.5 1.8E-13 6.1E-18 150.1 21.0 100 370-475 112-211 (401)
137 1ds9_A Outer arm dynein; leuci 99.5 2.1E-16 7.3E-21 156.2 -3.3 151 563-720 19-186 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.7E-19 140.2 8.8 135 582-720 15-154 (176)
139 3g39_A Variable lymphocyte rec 99.5 1E-14 3.4E-19 140.0 7.6 114 612-728 11-124 (170)
140 1ds9_A Outer arm dynein; leuci 99.5 3.2E-16 1.1E-20 155.0 -6.7 133 557-696 43-186 (198)
141 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 136.5 7.6 133 534-695 15-153 (176)
142 2r9u_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 133.1 9.5 110 613-725 15-124 (174)
143 4gt6_A Cell surface protein; l 99.3 1.3E-10 4.5E-15 127.9 25.6 155 244-404 56-214 (394)
144 3g39_A Variable lymphocyte rec 99.3 4.6E-12 1.6E-16 121.3 12.1 86 107-192 30-115 (170)
145 4gt6_A Cell surface protein; l 99.3 4.4E-11 1.5E-15 131.7 21.4 155 315-475 55-213 (394)
146 2r9u_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 120.1 11.9 103 86-192 16-118 (174)
147 3un9_A NLR family member X1; l 99.3 2.9E-13 1E-17 146.9 1.8 158 563-720 73-253 (372)
148 3un9_A NLR family member X1; l 99.3 1.2E-13 4.1E-18 149.9 -2.4 144 562-705 101-262 (372)
149 2ifg_A High affinity nerve gro 99.3 5.3E-12 1.8E-16 136.6 8.9 107 614-723 12-120 (347)
150 2ifg_A High affinity nerve gro 99.2 2.4E-11 8.2E-16 131.5 7.0 103 566-671 12-116 (347)
151 4h09_A Hypothetical leucine ri 99.1 6.3E-09 2.2E-13 113.8 25.2 127 294-428 41-167 (379)
152 4h09_A Hypothetical leucine ri 99.1 1.2E-08 4.2E-13 111.5 26.2 130 270-407 41-170 (379)
153 2ra8_A Uncharacterized protein 98.9 8.7E-10 3E-14 118.4 4.1 84 632-717 250-341 (362)
154 2ra8_A Uncharacterized protein 98.8 2.4E-09 8.1E-14 115.0 4.2 138 580-720 166-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 2.9E-08 9.8E-13 96.1 5.0 113 607-719 33-164 (185)
156 3rw6_A Nuclear RNA export fact 98.5 2.9E-08 9.8E-13 100.8 2.6 80 631-712 167-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.5 4.4E-08 1.5E-12 94.7 2.9 89 607-695 62-164 (185)
158 3rw6_A Nuclear RNA export fact 98.4 8E-08 2.7E-12 97.5 1.4 105 582-688 137-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.5E-06 1.2E-10 79.0 3.6 84 610-693 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 5.1E-06 1.7E-10 77.9 3.2 91 627-717 54-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 7.2E-05 2.5E-09 71.5 5.9 110 608-717 39-168 (197)
162 3rfe_A Platelet glycoprotein I 97.3 0.00024 8.1E-09 63.6 5.2 61 662-724 12-73 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.6E-09 69.6 3.5 89 606-694 66-169 (197)
164 2j67_A TOLL like receptor 10; 96.1 0.00032 1.1E-08 66.2 -3.3 54 813-866 33-106 (178)
165 3rfe_A Platelet glycoprotein I 95.9 0.0065 2.2E-07 54.1 4.7 56 638-695 12-68 (130)
166 1fyx_A TOLL-like receptor 2; b 95.4 0.00074 2.5E-08 61.8 -3.7 52 814-865 4-75 (149)
167 1t3g_A X-linked interleukin-1 95.1 0.0012 4.3E-08 60.9 -3.3 51 815-865 2-83 (159)
168 2js7_A Myeloid differentiation 94.9 0.0012 4E-08 61.2 -4.0 52 813-865 14-86 (160)
169 3ub2_A TOLL/interleukin-1 rece 94.6 0.00071 2.4E-08 61.6 -6.2 52 813-865 8-79 (146)
170 3ozi_A L6TR; plant TIR domain, 82.9 0.13 4.5E-06 48.7 -1.8 53 813-865 33-104 (204)
171 2ks1_B Epidermal growth factor 80.3 1.9 6.6E-05 29.3 3.7 7 769-775 13-19 (44)
172 2l2t_A Receptor tyrosine-prote 77.5 2.3 8E-05 28.8 3.4 8 786-793 30-37 (44)
173 3jrn_A AT1G72930 protein; TIR 72.0 0.16 5.4E-06 47.1 -4.7 52 813-865 6-77 (176)
174 3h16_A TIR protein; bacteria T 63.5 0.2 6.8E-06 45.8 -5.9 54 813-866 18-89 (154)
175 2ks1_B Epidermal growth factor 58.8 5.4 0.00019 27.1 2.1 13 765-777 13-25 (44)
176 2lz0_A Uncharacterized protein 39.9 66 0.0023 26.3 6.4 38 365-403 14-51 (100)
177 2l2t_A Receptor tyrosine-prote 39.8 25 0.00087 23.8 3.0 7 784-790 31-37 (44)
178 2lz0_A Uncharacterized protein 33.2 99 0.0034 25.2 6.4 18 434-451 11-28 (100)
179 2l9u_A Receptor tyrosine-prote 27.0 84 0.0029 19.6 3.5 9 784-792 24-32 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-95 Score=876.11 Aligned_cols=711 Identities=30% Similarity=0.447 Sum_probs=659.2
Q ss_pred cccccCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCccccc---CCcCCC
Q 002896 28 LIVYSDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGI---IPPQIG 104 (869)
Q Consensus 28 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~---~~~~l~ 104 (869)
++++++.++|++||++||+++.+ | . .+++|+ .+++||.|.||+|+ .++|++++|++.+ +.|. +|++++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~-~-~-~l~~W~----~~~~~C~w~gv~C~-~~~v~~L~L~~~~-l~g~~~~l~~~l~ 74 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPD-K-N-LLPDWS----SNKNPCTFDGVTCR-DDKVTSIDLSSKP-LNVGFSAVSSSLL 74 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSC-T-T-SSTTCC----TTSCGGGSTTEEEE-TTEEEEEECTTSC-CCEEHHHHHHHTT
T ss_pred CccccCCHHHHHHHHHHHhhCCC-c-c-cccCCC----CCCCCcCCcceEEC-CCcEEEEECCCCC-cCCccCccChhHh
Confidence 44555678999999999999974 6 4 899998 56799999999998 7999999999998 9998 899999
Q ss_pred CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc--ccCCCCCCCEEEcCCCCCCCCCCccc-cCCCcC
Q 002896 105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP--QIGHLSYIEALHLFKNQLSGPIPHEV-GGLSSL 181 (869)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 181 (869)
++++|+.++++.+.+. .+|+.++++++|++|+|++|.+.|.+|. .++++++|++|++++|.+++.+|..+ .++++|
T Consensus 75 ~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 75 SLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred ccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 9999999999998775 4678999999999999999999999998 99999999999999999999888876 899999
Q ss_pred ceeeccCcccCCCCCCc---cccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEc
Q 002896 182 NELALTSNFLKGSIPPS---LGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL 258 (869)
Q Consensus 182 ~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 258 (869)
++|++++|++++..|.. +.++++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. ++++++|++|++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence 99999999999888877 78999999999999999987663 8899999999999999988887 999999999999
Q ss_pred cCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCC-CCCCeEeccCCcccc
Q 002896 259 RNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL-KSLSGLELADNELSS 337 (869)
Q Consensus 259 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~Ls~n~l~~ 337 (869)
++|.+++.+|..+.++++|++|++++|++.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 999999999999999999999999999999888865 89999999999999999999988775 999999999999999
Q ss_pred ccCCCCcCccccceeeccCCcCCCCCccc-cCCCCCCCEEEccCCcCCCCCCCCCCCCC-cccEEEccCCccccccChhh
Q 002896 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLT-NLAILYLHSNTLLGSIPREI 415 (869)
Q Consensus 338 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~ 415 (869)
.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+.+|..+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 99999999999999999999999888876 89999999999999999999999998887 99999999999999998888
Q ss_pred hC--CCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCC
Q 002896 416 GN--LKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNL 492 (869)
Q Consensus 416 ~~--l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L 492 (869)
.. +++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+.+.+| .+..+++|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 77 8899999999999999999999999999999999999999999999999999999999999998887 68899999
Q ss_pred CEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCC
Q 002896 493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN 572 (869)
Q Consensus 493 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 572 (869)
++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccccCcccceeeccCc----------------------cccccCcccccCCccccccccccccccccccccc
Q 002896 573 HIIGKIPSEIGKLSSLIKLILRRN----------------------QLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSL 630 (869)
Q Consensus 573 ~l~~~~p~~l~~l~~L~~L~L~~n----------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 630 (869)
+++|.+|..+.....+..+.+..+ .+.+..+..+..++.++.++++.|.+.|.+|..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 999999999888777666555432 2445666777788888999999999999999999
Q ss_pred cCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcE
Q 002896 631 GNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLY 710 (869)
Q Consensus 631 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 710 (869)
+.+++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..++.+++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcccccCCCCccccccchhhhcCCCCCCCCCCCCCCCCCC
Q 002896 711 IDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKAS 755 (869)
Q Consensus 711 L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~~~~~~C~~~ 755 (869)
||+++|+++|.||..++|.++...+|.||+++||. |. ..|...
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~-~l-~~C~~~ 751 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY-PL-PRCDPS 751 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST-TS-CCCCSC
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCC-CC-cCCCCC
Confidence 99999999999999999999999999999999997 43 489754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.6e-76 Score=707.02 Aligned_cols=630 Identities=32% Similarity=0.432 Sum_probs=578.6
Q ss_pred EEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCC--CCCCCCcCCcccCCCccCCCCCCccc-CCCCCCCEE
Q 002896 84 VNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPP--QIGNLSMLKFLYLSANQFSGRIPPQI-GHLSYIEAL 160 (869)
Q Consensus 84 v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L 160 (869)
+..++++..+ +. .+|+.++++++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|
T Consensus 79 L~~l~~~~~~-~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 79 LESLFLSNSH-IN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp CCEEECTTSC-EE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred ccccCCcCCC-cC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 3444554443 22 2558899999999999999999999998 99999999999999999999999877 899999999
Q ss_pred EcCCCCCCCCCCcc---ccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCC
Q 002896 161 HLFKNQLSGPIPHE---VGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNN 237 (869)
Q Consensus 161 ~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 237 (869)
++++|.+++..|.. ++++++|++|++++|.+.+..+. .++++|++|++++|.+.+.+|. ++++++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 99999999888877 89999999999999999987654 8899999999999999998887 999999999999999
Q ss_pred cCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCC-CCCCeeecccccccCCCC
Q 002896 238 KLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNL-TNLDTLYLYTNSLSGSIP 316 (869)
Q Consensus 238 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~L~~n~~~~~~p 316 (869)
.+++.+|..++.+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 999999999999999999999999999888765 89999999999999999999988775 999999999999999999
Q ss_pred CcccCCCCCCeEeccCCccccccCCC-CcCccccceeeccCCcCCCCCccccCCCC-CCCEEEccCCcCCCCCCCCCCC-
Q 002896 317 SEIGNLKSLSGLELADNELSSSIPHY-LGNLTNLAAFYLYKNSLSGSIPSEIGNLK-SLSNLDLSENKLSGSIPHSLGN- 393 (869)
Q Consensus 317 ~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~- 393 (869)
..++++++|+.|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 99999999999999999999888865 89999999999999999999999998887 9999999999999999988877
Q ss_pred -CCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEE
Q 002896 394 -LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTML 472 (869)
Q Consensus 394 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 472 (869)
+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCC
Q 002896 473 TLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII 551 (869)
Q Consensus 473 ~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 551 (869)
++++|++.+..| .+..+++|++|++++|.+++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|+++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 999999998888 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCCCCEEEccCC----------------------cccccCCcccccCcccceeeccCccccccCcccccCC
Q 002896 552 GSLPPEIGDSSQLHVIDLSAN----------------------HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSL 609 (869)
Q Consensus 552 ~~~p~~l~~l~~L~~L~Ls~n----------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 609 (869)
|.+|..+.....+..+++..+ .+.+..+..+..++.++.+++..|.+.|.+|..+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 999998887766655544431 2345566677778888999999999999999999999
Q ss_pred ccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689 (869)
Q Consensus 610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 689 (869)
++|++||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|+.++.+++|++||+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhcCCCCcEEEccCCccccc
Q 002896 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGP 721 (869)
Q Consensus 690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 721 (869)
++|+++|.+|..- .+..+....+.+|+--|-
T Consensus 712 s~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 712 SNNNLSGPIPEMG-QFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CSSEEEEECCSSS-SGGGSCGGGGCSCTEEES
T ss_pred cCCcccccCCCch-hhccCCHHHhcCCchhcC
Confidence 9999999999642 233444556778875543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-63 Score=596.36 Aligned_cols=597 Identities=24% Similarity=0.248 Sum_probs=466.6
Q ss_pred cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN 189 (869)
Q Consensus 110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (869)
+.+|.++++++ .+|..+. +++++|+|++|.+.+..|..|+++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 57888888887 5776665 78999999999998777778999999999999999999888888899999999999999
Q ss_pred ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269 (869)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 269 (869)
.+++..+..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 98876666788889999999999888877777888888889999888888888888888888888888888888776655
Q ss_pred CCC--CCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcc---cCCCCCCeEeccCCccccccCCCCc
Q 002896 270 EIG--NLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI---GNLKSLSGLELADNELSSSIPHYLG 344 (869)
Q Consensus 270 ~l~--~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~~~~l~ 344 (869)
.+. .+++|++|++++|++.+..|..+..+++|+.|++.++.+.+.....+ ...++|+.|++++|.+.+..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 443 45788888888888887777778888888888888776653221111 1236778888888887777777777
Q ss_pred Cccc--cceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCC
Q 002896 345 NLTN--LAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF 422 (869)
Q Consensus 345 ~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 422 (869)
.++. |+.|++++|.+++..|..+..+++|++|++++|++.+..|..|..+++|+.|++++|...+.++.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--------- 314 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL--------- 314 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------------
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc---------
Confidence 6654 77777777777776667777777777777777777777777777777777777776654432110
Q ss_pred ccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCC-C--CcC--CCCCCCEEEC
Q 002896 423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI-P--NLR--NLTNLIRLRL 497 (869)
Q Consensus 423 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~l~--~l~~L~~L~l 497 (869)
..+.......+..+++|+.|++++|.+.+..+..|.++++|++|++++|.+.... + .+. ..++|+.|++
T Consensus 315 ------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 315 ------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp --------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred ------ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 0011111123455666666666666666666666666666666666666543211 1 122 2257888888
Q ss_pred cCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCccc-
Q 002896 498 NRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII- 575 (869)
Q Consensus 498 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~- 575 (869)
++|.+++..+..|..+++|++|++++|.+++.++ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 8888888888888888888888888888877655 57788888888888888888777888888888888888888876
Q ss_pred -ccCCcccccCcccceeeccCccccccCcccccCCcccccccccccccccccc--------ccccCCCCCCeeeCcCCcC
Q 002896 576 -GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP--------RSLGNLVKLHYLNLSTNQF 646 (869)
Q Consensus 576 -~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l 646 (869)
+.+|..+..+++|+.|++++|++.+..+..|.++++|++|++++|++++..+ ..|.++++|+.|+|++|++
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 5677888888888888888888888888888888899999999998876432 2478999999999999999
Q ss_pred CcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhh-cCCCCcEEEccCCcccccCCC
Q 002896 647 IQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFE-EMNGLLYIDISYNELHGPIPN 724 (869)
Q Consensus 647 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~~p~ 724 (869)
+...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 866666799999999999999999988888899999999999999999999999887 789999999999999999986
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-64 Score=615.68 Aligned_cols=669 Identities=22% Similarity=0.217 Sum_probs=479.7
Q ss_pred CEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCC-CccccCCCCCCEEEccC
Q 002896 158 EALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSI-PSEIGNLKSLSSLALGN 236 (869)
Q Consensus 158 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~ 236 (869)
+..+.++++++ .+|. -.++|++|+|++|.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46777788887 5565 4578889999999888888888888888888888888655555 67788888888888888
Q ss_pred CcCCCCcccccCCCCCCCEEEccCCCCCCCCCCC--CCCCccCCccccCcccCCcccC-ccccCCCCCCeeecccccccC
Q 002896 237 NKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE--IGNLKSLSILELGENRLNGSIP-LSLGNLTNLDTLYLYTNSLSG 313 (869)
Q Consensus 237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~ 313 (869)
|.+++..|..|+++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 8888877888888888888888888888766554 7888888888888888876654 467888888888888888887
Q ss_pred CCCCcccCC--CCCCeEeccCCccccccCCCCcCccc------cceeeccCCcCCCCCccccCCC---CCCCEEEccCCc
Q 002896 314 SIPSEIGNL--KSLSGLELADNELSSSIPHYLGNLTN------LAAFYLYKNSLSGSIPSEIGNL---KSLSNLDLSENK 382 (869)
Q Consensus 314 ~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~ 382 (869)
..+..+..+ ++|+.|++++|.+.+..|..++.+++ |+.|++++|.+++..+..+... +.++.+.++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 777777766 77888888888887777766665554 7777777777776666555432 456666665332
Q ss_pred CCCCCCCCCCCCCcccEEEccCCccccccChhhhCC--CCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCC
Q 002896 383 LSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNL--KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP 460 (869)
Q Consensus 383 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 460 (869)
.... ...+.+.+.....+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 243 ~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 243 MGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 2211 01122222223334333 567777777777777777777777788888888888877777
Q ss_pred ccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCC
Q 002896 461 EELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPN 539 (869)
Q Consensus 461 ~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 539 (869)
..|..+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+..|..+++|++|++++|.+++. ..+++
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~ 382 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS 382 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence 777778888888888888776655 677888888888888888877777888888888888888888743 23778
Q ss_pred CcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCcc-cccCCcccccccc
Q 002896 540 LGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPS-ELGSLIQLEYLDL 617 (869)
Q Consensus 540 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 617 (869)
|+.|++++|+++ .+|.. ..+++.|++++|++.+... ..+.++++|+.|++++|++.+..+. .+..+++|++|++
T Consensus 383 L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 383 IPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp CSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred cchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 888999988887 44443 4578899999998876422 3356789999999999998876543 4566889999999
Q ss_pred cccccc-----ccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCC
Q 002896 618 SSNRLS-----NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692 (869)
Q Consensus 618 s~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 692 (869)
++|.++ +..+..|.++++|+.|+|++|++++.+|..+.++++|++|+|++|++++..|..+. ++|+.|||++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 999987 44556788999999999999999999999999999999999999999988877766 89999999999
Q ss_pred CCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCCCCCCC--------Ccc
Q 002896 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGDIKGFQSCKASKSHKPA--------SRK 764 (869)
Q Consensus 693 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~~~~~~C~~~~~~~~~--------~~~ 764 (869)
++++.+|..|. +|+.+++++|++.|.|+..+ |......++..+||. +....|..|...++. .+.
T Consensus 537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~-~~~~~C~~p~~~~g~~l~~~~~~~C~ 608 (844)
T 3j0a_A 537 QLLAPNPDVFV---SLSVLDITHNKFICECELST----FINWLNHTNVTIAGP-PADIYCVYPDSFSGVSLFSLSTEGCD 608 (844)
T ss_dssp CCCCCCSCCCS---SCCEEEEEEECCCCSSSCCS----HHHHHHHTTTTTCCC-GGGCCCSSCSSSCSCCTTTCCCCCC-
T ss_pred cCCCCChhHhC---CcCEEEecCCCcccccccHH----HHHHHHhcCcccccc-cccCccCCchhhCCCccccCccccCC
Confidence 99999998764 78999999999999998543 222233456666665 444567554321110 111
Q ss_pred e-----EEEeh-HHHH-HHHHHHHHHHHHHHHH------hhchhhhcccCCCCCCCCCcccccccccCcCHHHHHHHhcC
Q 002896 765 I-----WVVIV-FPLL-GTVALLISLIALFFIF------RRRKNALQTLQSSPRGTRGFLSVLTFEGKIVYEEIIRQRMV 831 (869)
Q Consensus 765 ~-----~~~i~-~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isy~~~~~a~~~ 831 (869)
. ...++ ++++ ++++++++++++++++ |++++.+.+.... ........+.||+||+|+..|++|+.
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~yd~fisy~~~d~~~v~ 686 (844)
T 3j0a_A 609 EEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDH--PQGTEPDMYKYDAYLCFSSKDFTWVQ 686 (844)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTTSHHHHC----------------CC--CGGGSSSCCCCSEEEECCSTTHHHHH
T ss_pred chhhccccceehhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhccc--cccccccceeccEEEEeeCCcHHHHH
Confidence 0 01111 1111 1111111111111111 1111111111111 01112235789999999999999999
Q ss_pred CCcccccchh-----h-------------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896 832 LMMSTALEKV-----D-------------KEVYTKLIYLLEKSLQ-----SRNFIRHS 866 (869)
Q Consensus 832 ~~~~~~Le~~-----~-------------~~i~~~i~~~~~~s~~-----s~~fl~~~ 866 (869)
.++.|.||+. + ++|+++|.++||+||| |++|++.+
T Consensus 687 ~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 687 NALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp HTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred HHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 8999999973 1 7899999999999999 99998753
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.1e-62 Score=582.66 Aligned_cols=577 Identities=22% Similarity=0.230 Sum_probs=451.5
Q ss_pred cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896 98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG 177 (869)
Q Consensus 98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (869)
.+|..+. +++++|+|++|.+++..+..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.+++..+..|++
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 4666554 79999999999999887888999999999999999999999999999999999999999999666667999
Q ss_pred CCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccC--CCCCCCE
Q 002896 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLG--NLTNLDT 255 (869)
Q Consensus 178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~ 255 (869)
+++|++|++++|++++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 99999999999999988888999999999999999999999999999999999999999999987776654 5689999
Q ss_pred EEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCcccc---CCCCCCeeecccccccCCCCCcccCCCC--CCeEec
Q 002896 256 LYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLG---NLTNLDTLYLYTNSLSGSIPSEIGNLKS--LSGLEL 330 (869)
Q Consensus 256 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~---~l~~L~~L~L~~n~~~~~~p~~l~~l~~--L~~L~L 330 (869)
|++++|.+++..|..+..+++|+.|++.++.+.+.....+. ..++|++|++++|.+++..|.++..++. |+.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 99999999999999999999999999999887643322221 4589999999999999999999988765 999999
Q ss_pred cCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCC-----CCC----CCCCCCcccEEE
Q 002896 331 ADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGS-----IPH----SLGNLTNLAILY 401 (869)
Q Consensus 331 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~----~l~~l~~L~~L~ 401 (869)
++|.+++..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|...+. +|. .|..+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999998765532 222 566777788888
Q ss_pred ccCCccccccChhhhCCCCCCccccCCCcCcccc--cccccC--CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCC
Q 002896 402 LHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSI--SHSLGN--LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477 (869)
Q Consensus 402 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 477 (869)
+++|.+.+..+..+..+++|++|++++|.+.... ...+.. .++|+.|++++|.+++..|..+..+++|++|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 8877777776777777777777777777643221 112221 245666666666666665555555555555555555
Q ss_pred cCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCC--CCCC
Q 002896 478 QLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII--GSLP 555 (869)
Q Consensus 478 ~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~--~~~p 555 (869)
.+.+.++ +..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|
T Consensus 416 ~l~~~~~----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 416 EIGQELT----------------------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CCEEECC----------------------SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred cCccccC----------------------cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 5544332 134444455555555555555544555555555555555555544 3455
Q ss_pred cCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccC--------cccccCCcccccccccccccccccc
Q 002896 556 PEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQL--------PSELGSLIQLEYLDLSSNRLSNSIP 627 (869)
Q Consensus 556 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~ 627 (869)
..+..+++|++|++++|++++..+..+.++++|++|++++|++.+.. +..+.++++|++|+|++|+++...+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 55556666666666666665555555566666666666666655432 2236788899999999999986655
Q ss_pred ccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhc-CCCCCcEEeCCCCCCCCCc
Q 002896 628 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC-NMRSLEMLNLSHNNLSDFI 698 (869)
Q Consensus 628 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~ 698 (869)
..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.|++++|++...-
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 6789999999999999999887777788999999999999999999888887 7899999999999998753
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-57 Score=532.53 Aligned_cols=537 Identities=20% Similarity=0.222 Sum_probs=314.4
Q ss_pred cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN 189 (869)
Q Consensus 110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (869)
+.++.++..++ .+|..+. +++++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 46677777766 5666554 36777777777777666777777777777777777777666666666666666666666
Q ss_pred ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269 (869)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 269 (869)
++++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++ ..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~------------------------~~~~ 147 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS------------------------IKLP 147 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC------------------------CCCC
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc------------------------cCcc
Confidence 6665555555555555555555555554434444555555555555554443 2222
Q ss_pred CCCCCccCCccccCcccCCcccCccccCCCCCC--eeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCcc
Q 002896 270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLD--TLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLT 347 (869)
Q Consensus 270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~--~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 347 (869)
.+..+++|++|++++|++.+..|..++.+++|+ +|++++|.+++..|..+. ..+|+.|++++|.. .+..+..+.
T Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~ 223 (606)
T 3t6q_A 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLK 223 (606)
T ss_dssp TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTT
T ss_pred cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HHHHhhhcc
Confidence 223344555555555555444444455555555 455555555544443332 23455555555431 111122222
Q ss_pred ccceeeccCCcCCC-----CCccccCCCC--CCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCC
Q 002896 348 NLAAFYLYKNSLSG-----SIPSEIGNLK--SLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKS 420 (869)
Q Consensus 348 ~L~~L~L~~n~l~~-----~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 420 (869)
.+....+....+.+ ..+..+..+. +|+.|++++|.+++..+..|..+++|++|++++|.+. .+
T Consensus 224 ~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l--------- 293 (606)
T 3t6q_A 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL--------- 293 (606)
T ss_dssp TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC---------
T ss_pred ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC---------
Confidence 22111111111110 0011111111 3444444444444444444444444444444444443 33
Q ss_pred CCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC--CcCCCCCCCEEECc
Q 002896 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP--NLRNLTNLIRLRLN 498 (869)
Q Consensus 421 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~l~ 498 (869)
|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++ .+..+++|++|+++
T Consensus 294 ---------------p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 294 ---------------PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp ---------------CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred ---------------ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 3344444555555555555554444445555555555555555443332 24455555555555
Q ss_pred CCcCcccc--CccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccc
Q 002896 499 RNHLTCNI--SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG 576 (869)
Q Consensus 499 ~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 576 (869)
+|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|..
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------- 419 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS------------------- 419 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-------------------
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-------------------
Confidence 55555443 444555555555555555555555555555555555555544444333222
Q ss_pred cCCcccccCcccceeeccCccccccCcccccCCcccccccccccccccc---ccccccCCCCCCeeeCcCCcCCcccchh
Q 002896 577 KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS---IPRSLGNLVKLHYLNLSTNQFIQEIPIK 653 (869)
Q Consensus 577 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 653 (869)
.+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|++++.+|..
T Consensus 420 ----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 420 ----PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp ----TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred ----hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 244555555555555555555555556666677777777776652 2356888899999999999999888899
Q ss_pred hhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896 654 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726 (869)
Q Consensus 654 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~ 726 (869)
++.+++|++|+|++|++++.+|+.+..+++| .|++++|++++.+|..+..+++|+++++++|+++|.|+..+
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999998543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.6e-56 Score=521.26 Aligned_cols=533 Identities=21% Similarity=0.217 Sum_probs=402.5
Q ss_pred cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896 98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG 177 (869)
Q Consensus 98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (869)
.+|..+. +++++|||++|.+++..|..|+++++|++|+|++|.+.+..|.+|+++++|++|++++|.+++..|..|++
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 4555554 37899999999999888999999999999999999999888999999999999999999999988999999
Q ss_pred CCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCC--E
Q 002896 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD--T 255 (869)
Q Consensus 178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~ 255 (869)
+++|++|++++|++++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..++.+++|+ +
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 99999999999999988788899999999999999999985544555699999999999999988888899999999 8
Q ss_pred EEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCcc
Q 002896 256 LYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNEL 335 (869)
Q Consensus 256 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l 335 (869)
|++++|.+++..|..+.. .+|+.|++++|. .++..+..+.+++...+....+ ..+...++....+
T Consensus 184 L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~-----------~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTF-----------EDMDDEDISPAVF 248 (606)
T ss_dssp EECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCC-----------TTSCCCCCCGGGG
T ss_pred EecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhh-----------ccccccccChhHh
Confidence 999999999877776654 689999999886 3444555555554444432222 2222222222222
Q ss_pred ccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhh
Q 002896 336 SSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREI 415 (869)
Q Consensus 336 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 415 (869)
.+ +.. .+|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+
T Consensus 249 ~~-----l~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 249 EG-----LCE-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GG-----GGG-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred ch-----hhc-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence 21 111 16888999999988887777888999999999999888 677788888899999998888887777777
Q ss_pred hCCCCCCccccCCCcCcccccc-cccCCCCCCeEEccCCCCcccC--CccccCCCCCcEEecCCCcCcCCCCCcCCCCCC
Q 002896 416 GNLKSLFELQLGDNKLSNSISH-SLGNLTHMTLLALYDNALSGVI--PEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNL 492 (869)
Q Consensus 416 ~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 492 (869)
..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+.. +. .+..+++|
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------------------~~~~l~~L 378 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-----------------------QLRNLSHL 378 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-----------------------TTTTCTTC
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-----------------------hcccCCCC
Confidence 8888888888888777654443 3566666666666666665443 33 45556666
Q ss_pred CEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCc-CcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccC
Q 002896 493 IRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISS-DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSA 571 (869)
Q Consensus 493 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 571 (869)
++|++++|.+.+..+..|..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 6666777766667777777888888888888888776654 377888888888888888877777788888888888888
Q ss_pred CcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccc
Q 002896 572 NHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIP 651 (869)
Q Consensus 572 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 651 (869)
|++++... ..+..+..+++|++|++++|++++..|..|..+++|+.|+|++|++++.+|
T Consensus 459 n~l~~~~~---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 459 NHFPKGNI---------------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp CBCGGGEE---------------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred CCCCcccc---------------------ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 88765211 011223355555666666666665656666666666666666666666666
Q ss_pred hhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 652 IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 652 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
..+.+++.| .|++++|++++.+|..+..+++|+.|++++|++++..+
T Consensus 518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 666666666 67777777766666667777777777777777766433
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-56 Score=524.05 Aligned_cols=540 Identities=21% Similarity=0.226 Sum_probs=345.8
Q ss_pred CcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeecccc
Q 002896 134 KFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNN 213 (869)
Q Consensus 134 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 213 (869)
++++.+++.++ .+|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 45555555555 4454433 45555555555555544445555555555555555555444444555555555555555
Q ss_pred CCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCc-ccC
Q 002896 214 SLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG-SIP 292 (869)
Q Consensus 214 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p 292 (869)
.+++..|..|+++++|++|++++|.++ +..+..++++++|++|++++|.+.+ .+|
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~lp 146 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLA------------------------SLESFPIGQLITLKKLNVAHNFIHSCKLP 146 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCC------------------------CSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cccccChhhcCCcccCCEEEccCCccc------------------------cccccccCCCCCCCEEeCCCCcccceech
Confidence 544444444444444444444444444 4333444444444455554444443 334
Q ss_pred ccccCCCCCCeeecccccccCCCCCcccCCCCCC----eEeccCCccccccCCCCcCccccceeeccCCcCC-CCCcccc
Q 002896 293 LSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLS----GLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS-GSIPSEI 367 (869)
Q Consensus 293 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~ 367 (869)
..++++++|++|++++|.+++..|..++.+++|+ .|++++|.+++..+..+... +|+.|++++|.+. +..|..+
T Consensus 147 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHH
T ss_pred HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHh
Confidence 4555555555555555555544444444444333 56666666655444444333 5666666666655 2344555
Q ss_pred CCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCcccc-CCCcCcccccccccCCCCCC
Q 002896 368 GNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL-GDNKLSNSISHSLGNLTHMT 446 (869)
Q Consensus 368 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~ 446 (869)
.++++|+.+++..+.+.+... +.. +....+..+..+ .++.+++ ..+.+.+..+. +..+++|+
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~--------l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~ 288 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERN--------LEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVS 288 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCC--------CSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCS
T ss_pred ccccccccccccccccccCCc--------ccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCC
Confidence 666666666555443322100 000 000011111111 2333333 33444444444 55555555
Q ss_pred eEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcc
Q 002896 447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526 (869)
Q Consensus 447 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l 526 (869)
.+++++|.+.. +| .+..+++|++|++++|.+ +.+|.+ .+++|++|++++|...+.. .+..+++|++|++++|.+
T Consensus 289 ~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 289 AMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EEEecCccchh-hh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 55555555543 23 555556666666666666 444555 6666666666666443332 455677777777777777
Q ss_pred ccc--CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCc
Q 002896 527 YGQ--ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLP 603 (869)
Q Consensus 527 ~~~--~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~ 603 (869)
++. .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+..+++|+.|++++|.+.+..|
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 665 36666777788888888887764 55777888888888888888887777 578888899999999999888888
Q ss_pred ccccCCccccccccccccccc-cccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCC
Q 002896 604 SELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR 682 (869)
Q Consensus 604 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 682 (869)
..+..+++|++|++++|.+++ .+|..++.+++|+.|+|++|++++.+|..+.++++|++|+|++|++++.+|..++.++
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 888899999999999999988 4788999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeCCCCCCCCCcchhhhcCC-CCcEEEccCCcccccCCCCc
Q 002896 683 SLEMLNLSHNNLSDFIPRCFEEMN-GLLYIDISYNELHGPIPNST 726 (869)
Q Consensus 683 ~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~~p~~~ 726 (869)
+|++|++++|+++. +|..+..++ +|+++++++|++.|.|+..+
T Consensus 522 ~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 522 SLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp TCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred cCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 99999999999995 666688887 69999999999999998644
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-54 Score=508.87 Aligned_cols=524 Identities=22% Similarity=0.188 Sum_probs=364.4
Q ss_pred cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896 98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG 177 (869)
Q Consensus 98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (869)
.+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|++
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 4555554 78999999999999888889999999999999999999888889999999999999999999888999999
Q ss_pred CCcCceeeccCcccCCCCCCccccccccceeeccccCCCC-CCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCC--
Q 002896 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG-SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLD-- 254 (869)
Q Consensus 178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-- 254 (869)
+++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 9999999999999998888889999999999999999886 5688899999999999999999887777776665554
Q ss_pred --EEEccCCCCCCCCCCCCCCCccCCccccCcccCC-cccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEecc
Q 002896 255 --TLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELA 331 (869)
Q Consensus 255 --~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~-~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls 331 (869)
+|++++|.+++..+..+... +|+.|++++|.+. +..|..+.+++.|+.+++..+.+.+.. .+..
T Consensus 183 l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~---- 249 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEI---- 249 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSC----
T ss_pred cceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------cccc----
Confidence 79999998886655555544 8888999888876 456677788888888887665543211 1110
Q ss_pred CCccccccCCCCcCccccceeec-cCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccc
Q 002896 332 DNELSSSIPHYLGNLTNLAAFYL-YKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS 410 (869)
Q Consensus 332 ~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 410 (869)
+....+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.
T Consensus 250 ---~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 250 ---FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp ---CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SS
T ss_pred ---cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cc
Confidence 011111222222 3555555 55666666655 6667777777777777653 34 666677777777777777 45
Q ss_pred cChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCccc--CCccccCCCCCcEEecCCCcCcCCCCCcCC
Q 002896 411 IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV--IPEELGNLVKLTMLTLSDNQLQGSIPNLRN 488 (869)
Q Consensus 411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~ 488 (869)
+| .+ .+++|++|++++|...+.. .+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+.+....+..
T Consensus 322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 397 (606)
T 3vq2_A 322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397 (606)
T ss_dssp CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTT
T ss_pred cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccC
Confidence 56 33 6677777777777544332 455667777777777766654 355556666666666666655443334444
Q ss_pred CCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEE
Q 002896 489 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI 567 (869)
Q Consensus 489 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 567 (869)
+ ++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 398 l------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 398 L------------------------EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp C------------------------TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred C------------------------CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 4 444444444444444444 344555555555555555555555556666666666
Q ss_pred EccCCcccc-cCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcC
Q 002896 568 DLSANHIIG-KIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQF 646 (869)
Q Consensus 568 ~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 646 (869)
++++|++++ .+|..++.+++|+.|++++|++.+..|..+..+++|++|++++|++++..|..+..+++|+.|+|++|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 666666665 3555666666666666666666666666666777777777777777776677777777777777777776
Q ss_pred Ccccchhhhccc-ccccccccccccCCc
Q 002896 647 IQEIPIKLEKLI-HLSELDLSHNFLGKE 673 (869)
Q Consensus 647 ~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ 673 (869)
+ .+|..+..++ +|++|++++|.+...
T Consensus 534 ~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 534 E-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp C-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred c-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 5 4555566665 477777777777654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-54 Score=524.76 Aligned_cols=521 Identities=23% Similarity=0.213 Sum_probs=347.9
Q ss_pred CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCC-CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896 105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI-PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183 (869)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (869)
-.++|++|||++|.+++..|..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3468889999999888878888888999999999888766666 677888888888888888888877888888888888
Q ss_pred eeccCcccCCCCCCc--cccccccceeeccccCCCCCCC-ccccCCCCCCEEEccCCcCCCCcccccCCC--CCCCEEEc
Q 002896 184 LALTSNFLKGSIPPS--LGNLTNLAILYLHNNSLSGSIP-SEIGNLKSLSSLALGNNKLCGSIPLFLGNL--TNLDTLYL 258 (869)
Q Consensus 184 L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L 258 (869)
|+|++|.+++..|.. ++++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 888888888766554 7778888888888888776544 457777777777777777777767666655 67777777
Q ss_pred cCCCCCCCCCCCCCCCcc------CCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccC
Q 002896 259 RNNSFSSSIPSEIGNLKS------LSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELAD 332 (869)
Q Consensus 259 ~~n~l~~~~~~~l~~l~~------L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~ 332 (869)
++|.+.+..|..+..+++ |+.|++++|.+++..+..+... ....+++.+.++.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---------------------ISKSQAFSLILAH 240 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT---------------------SCSCCBSEEECCS
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh---------------------cCcccccceeccc
Confidence 777777666655555443 5555555554444444333211 0112344444443
Q ss_pred CccccccCCCCcCccccceeeccCCcCCCCCccccCCC--CCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccc
Q 002896 333 NELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNL--KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS 410 (869)
Q Consensus 333 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 410 (869)
+..... +..+.+.+..+..+.++ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 241 ~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 241 HIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp SCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred cccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence 221110 01112222222223332 5667777777766666666666677777777777777666
Q ss_pred cChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCC
Q 002896 411 IPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLT 490 (869)
Q Consensus 411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 490 (869)
.+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+ +..++
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----i~~~~ 381 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIP 381 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----CSSCC
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----ccCCC
Confidence 66666667777777777777766666667777777777777777766666666667777777777766653 22255
Q ss_pred CCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEcc
Q 002896 491 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLS 570 (869)
Q Consensus 491 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls 570 (869)
+|+.|++++|.++.. +.. ..+++.|++++|.+++... +..+..+++|++|+++
T Consensus 382 ~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~-----------------------~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 382 SIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDI-----------------------LYFLLRVPHLQILILN 434 (844)
T ss_dssp SCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTT-----------------------HHHHTTCTTCCEEEEE
T ss_pred CcchhccCCCCcccc-ccc---ccccceeecccCccccCch-----------------------hhhhhcCCccceeeCC
Confidence 556666666655422 111 2344455555554443211 1123345555555555
Q ss_pred CCcccccCCc-ccccCcccceeeccCcccc-----ccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896 571 ANHIIGKIPS-EIGKLSSLIKLILRRNQLF-----GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644 (869)
Q Consensus 571 ~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 644 (869)
+|++++..+. .+..+++|+.|++++|.+. +..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|
T Consensus 435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 5555543222 2334566666666666664 344566778889999999999999888888999999999999999
Q ss_pred cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCC
Q 002896 645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 697 (869)
Q Consensus 645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 697 (869)
++++..|..+. ++|+.|+|++|++++.+|+.| ++|+.|++++|++...
T Consensus 515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred CCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 99887777666 789999999999999888765 4788999999998864
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-55 Score=519.78 Aligned_cols=501 Identities=21% Similarity=0.295 Sum_probs=271.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCC-------CCCCCCCCCCCCCCCCcc---CceeeCCCCCEEEEeCCCCCcccccCCcCC
Q 002896 34 STEEVHALLKWKTSLQNHDKGS-------LLPSWTLNNATKISPCAW---FGIHCNHVGRVNSINLTNVNQIFGIIPPQI 103 (869)
Q Consensus 34 ~~~~~~~ll~~k~~~~~~~~~~-------~l~~W~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l 103 (869)
...|+.||.++++++..+. .. ..++|+ .+++||.| .||+|+..|||++|+|++.+ +.|.+|+++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~-l~g~lp~~l 101 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKN-WSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGFG-ASGRVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGG-CCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTSC-CEEEECGGG
T ss_pred HHHHHHHHHHHHHHcCCCC-cccCCcCCccCCCCC----CCCCcccccCCCCeEEcCCCCEEEEEecCcc-cCCcCChHH
Confidence 4579999999999985422 21 345898 56899999 99999888999999999999 999999999
Q ss_pred CCCCCCcEEeCCCCCC------CC------CCCCCCCCCCcCCcccCCCccCCCCCCcccCC-CCCCCEEEcCCCCCCCC
Q 002896 104 GNISKLKYLDLSSNSF------SG------TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGH-LSYIEALHLFKNQLSGP 170 (869)
Q Consensus 104 ~~l~~L~~L~Ls~n~~------~~------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~L~~n~l~~~ 170 (869)
+++++|++|+|++|.+ .| .+|... +.+|| ++++++.+.+.+|..++. +..+..+++....+..
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~- 177 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK- 177 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-
Confidence 9999999999999976 22 344433 56677 888888888877776652 2222222322221110
Q ss_pred CCccccCCCcCceeecc--CcccCCCCCCccccccccceeeccccCCCCC-----------------CCcccc--CCCCC
Q 002896 171 IPHEVGGLSSLNELALT--SNFLKGSIPPSLGNLTNLAILYLHNNSLSGS-----------------IPSEIG--NLKSL 229 (869)
Q Consensus 171 ~p~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L 229 (869)
.....++.+.+. .|++++ +|..++++++|++|++++|.+++. +|..++ ++++|
T Consensus 178 -----~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 178 -----SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp -----CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred -----ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 111222222222 345555 555555555555555555555553 444444 55555
Q ss_pred CEEEccCCcCCCCcccccCCCCCCCEEEccCCC-CCC-CCCCCCCCC------ccCCccccCcccCCcccCc--cccCCC
Q 002896 230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS-FSS-SIPSEIGNL------KSLSILELGENRLNGSIPL--SLGNLT 299 (869)
Q Consensus 230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~~~~~~p~--~l~~l~ 299 (869)
++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++|+++ .+|. .+++++
T Consensus 252 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~ 330 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK 330 (636)
T ss_dssp CEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred CEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence 555555555555555555555555555555554 444 444444333 44555555555544 4444 444555
Q ss_pred CCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccc-cceeeccCCcCCCCCccccCCCC--CCCEE
Q 002896 300 NLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN-LAAFYLYKNSLSGSIPSEIGNLK--SLSNL 376 (869)
Q Consensus 300 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L 376 (869)
+|++|++++|.++|.+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++ +|++|
T Consensus 331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 55555555555544444 4444455555555555544 34444444544 555555555544 3444443332 45555
Q ss_pred EccCCcCCCCCCCCCC-------CCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEE
Q 002896 377 DLSENKLSGSIPHSLG-------NLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 449 (869)
Q Consensus 377 ~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 449 (869)
++++|.+++..|..+. .+++|++|++++|.+.+..+..+..+++|++|++++|+++...+..+....
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~------ 481 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN------ 481 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT------
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc------
Confidence 5555555555554444 444555555555555522222333445555555555555422211111111
Q ss_pred ccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcC--CCCCCCEEECcCCcCccccCccccCCCCCCEEeCCC----
Q 002896 450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLR--NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSH---- 523 (869)
Q Consensus 450 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~---- 523 (869)
..+.++++|++|++++|++......+. .+++|++|++++|.+++ +|..+..+++|++|++++
T Consensus 482 -----------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 482 -----------ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp -----------EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred -----------ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 001112255555555555553222333 55666666666666655 455555666666666644
Q ss_pred --CcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCccc
Q 002896 524 --NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHII 575 (869)
Q Consensus 524 --n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 575 (869)
|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|++|++++|++.
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 444555555555555555555555555 34444433 45555555555443
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-53 Score=505.29 Aligned_cols=484 Identities=20% Similarity=0.280 Sum_probs=281.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC-CCCCCC--Ccc------------CceeeCCCCCEEEEeCCCCCccc
Q 002896 32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNN-ATKISP--CAW------------FGIHCNHVGRVNSINLTNVNQIF 96 (869)
Q Consensus 32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~-~~~~~~--c~w------------~gv~c~~~~~v~~l~l~~~~~l~ 96 (869)
++..+|++||++||+++.+ | +|+... ....+| |.| .||+|+..+||++|+|++.+ +.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~-~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~-L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDG-K------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG-AK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTG-G------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTC-CE
T ss_pred ccchHHHHHHHHHHHHcCC-C------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCC-CC
Confidence 3456899999999999954 2 787211 001355 999 99999988999999999999 99
Q ss_pred ccCCcCCCCCCCCcEEeC-CCCCCCCCCCCCC------------------------------------------------
Q 002896 97 GIIPPQIGNISKLKYLDL-SSNSFSGTIPPQI------------------------------------------------ 127 (869)
Q Consensus 97 ~~~~~~l~~l~~L~~L~L-s~n~~~~~~p~~l------------------------------------------------ 127 (869)
|.+|+.+++|++|++|+| ++|.++|..|-..
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 8887766533210
Q ss_pred ---CCCCcCCcccCCC--ccCCCCCCcccCCCCCCCEEEcCCCCCCC-----------------CCCcccc--CCCcCce
Q 002896 128 ---GNLSMLKFLYLSA--NQFSGRIPPQIGHLSYIEALHLFKNQLSG-----------------PIPHEVG--GLSSLNE 183 (869)
Q Consensus 128 ---~~l~~L~~L~Ls~--n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~ 183 (869)
.....++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 1122334444433 56665 67677777777777777777766 2555544 5555555
Q ss_pred eeccCcccCCCCCCccccccccceeeccccC-CCC-CCCccccCCC-------CCCEEEccCCcCCCCccc--ccCCCCC
Q 002896 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNS-LSG-SIPSEIGNLK-------SLSSLALGNNKLCGSIPL--FLGNLTN 252 (869)
Q Consensus 184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~ 252 (869)
|+|++|.+.+.+|..++++++|++|++++|. +++ .+|..++.++ +|++|++++|.++ .+|. .++++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 5555555555555555555555555555555 554 4444333332 5555555555555 4454 5555555
Q ss_pred CCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCC-CCeeecccccccCCCCCcccCCCC--CCeEe
Q 002896 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTN-LDTLYLYTNSLSGSIPSEIGNLKS--LSGLE 329 (869)
Q Consensus 253 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~-L~~L~L~~n~~~~~~p~~l~~l~~--L~~L~ 329 (869)
|++|++++|.++ .+| .+.++++|+.|++++|++. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 555555555555 444 4555555555555555555 44544555555 555555555554 44444444332 55555
Q ss_pred ccCCccccccCCCCcCccccceeeccCCcCCCCCccccC--CCCCCCEEEccCCcCCCCCCCC-CCCCCcccEEEccCCc
Q 002896 330 LADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG--NLKSLSNLDLSENKLSGSIPHS-LGNLTNLAILYLHSNT 406 (869)
Q Consensus 330 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~ 406 (869)
+++|.+.+.+|... ..+. .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.
T Consensus 651 Ls~N~l~g~ip~l~---------------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 651 FSYNKIGSEGRNIS---------------------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCSSCTTTTSSSCS---------------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred CcCCcCCCccccch---------------------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence 55555544333211 0111 1234555555555554 22322 2244555555555555
Q ss_pred cccccChhh--------hCCCCCCccccCCCcCccccccccc--CCCCCCeEEccCCCCcccCCccccCCCCCcEEecCC
Q 002896 407 LLGSIPREI--------GNLKSLFELQLGDNKLSNSISHSLG--NLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSD 476 (869)
Q Consensus 407 l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 476 (869)
+. .+|..+ .++++|++|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 54 333222 22336777777777777 4555565 77777788887777776 566666666666666666
Q ss_pred CcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCc
Q 002896 477 NQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPP 556 (869)
Q Consensus 477 n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~ 556 (869)
|+ ++++|.+.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus 786 N~-----------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 786 QR-----------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp CB-----------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CC-----------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 54 2333444444444445555555555555555 44554
Q ss_pred CcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc
Q 002896 557 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 598 (869)
Q Consensus 557 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 598 (869)
.+. ++|+.|||++|++....+..+.....+..+.+.+|+.
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred hhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 443 3666666666666655444554444555555555544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-50 Score=469.72 Aligned_cols=511 Identities=21% Similarity=0.178 Sum_probs=361.8
Q ss_pred eeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896 183 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262 (869)
Q Consensus 183 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (869)
+++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 3444444444 2333332 356666666666666555566666666666666666665555556666666666666666
Q ss_pred CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccC-CCCCcccCCCCCCeEeccCCccccccCC
Q 002896 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIPH 341 (869)
Q Consensus 263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 341 (869)
+++..|..|.++++|++|++++|++.+..+..++++++|++|++++|.+++ .+|..++++++|+.|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 665555566666666666666666654444445566666666666666554 2455555666666666666665555455
Q ss_pred CCcCcccc----ceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcccc-ccChhhh
Q 002896 342 YLGNLTNL----AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG-SIPREIG 416 (869)
Q Consensus 342 ~l~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~ 416 (869)
.++.+++| +.+++++|.+.+..+ ..+... +|+.|++++|.... .++..+.
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~------------------------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~ 222 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQP------------------------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQ 222 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECT------------------------TTTTTC-EEEEEEEESCCSCTTHHHHHHH
T ss_pred HccchhccchhhhhcccCCCCceecCH------------------------HHhccC-cceeEecccccccccchhhhhc
Confidence 55555444 445555555544444 433333 44444444442211 1223333
Q ss_pred CCCCCCccccCCCcC------cccccccccCCC--CCCeEEccCC-CCcccCCccccCCCCCcEEecCCCcCcCCCCCcC
Q 002896 417 NLKSLFELQLGDNKL------SNSISHSLGNLT--HMTLLALYDN-ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLR 487 (869)
Q Consensus 417 ~l~~L~~L~Ls~n~l------~~~~~~~l~~l~--~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~ 487 (869)
.++.++.+.+....+ .......+..++ .++.++++++ .+.+..+..+..+++|++|++++|.+.+..+.+.
T Consensus 223 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 302 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302 (570)
T ss_dssp TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS
T ss_pred CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc
Confidence 444443333221111 111111222222 2456667766 6677778888888888999998888876544666
Q ss_pred CCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCC--CcCcCCCCCCC
Q 002896 488 NLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSL--PPEIGDSSQLH 565 (869)
Q Consensus 488 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~--p~~l~~l~~L~ 565 (869)
.+ +|++|++++|.+... |. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. |..+..+++|+
T Consensus 303 ~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 303 NF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred cC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 77 899999999988733 32 4678899999999988776655 67899999999999988654 67788899999
Q ss_pred EEEccCCcccccCCcccccCcccceeeccCccccccCc-ccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896 566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644 (869)
Q Consensus 566 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 644 (869)
+|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 999999999865544 8999999999999999998876 56889999999999999999999999999999999999999
Q ss_pred cCC-cccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCC
Q 002896 645 QFI-QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 723 (869)
Q Consensus 645 ~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p 723 (869)
++. +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++.+|..|..+++|+.|++++|+++|.||
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 997 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 002896 724 NSTAF 728 (869)
Q Consensus 724 ~~~~~ 728 (869)
..+.+
T Consensus 536 ~~~~~ 540 (570)
T 2z63_A 536 RIDYL 540 (570)
T ss_dssp TTHHH
T ss_pred chHHH
Confidence 76544
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-48 Score=456.31 Aligned_cols=510 Identities=22% Similarity=0.212 Sum_probs=299.7
Q ss_pred cccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccC
Q 002896 135 FLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS 214 (869)
Q Consensus 135 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 214 (869)
+++-++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 3444444444 4554442 356666666666665555566666666666666666665555556666666666666666
Q ss_pred CCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC-CCCCCCCCCccCCccccCcccCCcccCc
Q 002896 215 LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPL 293 (869)
Q Consensus 215 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~p~ 293 (869)
+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 655555555566666666666665554443345555555555555555544 2344455555555555555555444444
Q ss_pred cccCCCCCCeeecccccccCCCCCcccCCCCC-CeEeccCCccccccCCCCcCccccceeeccCCcCCC-CCccccCCCC
Q 002896 294 SLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSL-SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG-SIPSEIGNLK 371 (869)
Q Consensus 294 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L-~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~ 371 (869)
.++.+++|+ .+ +.+++++|.+.+..+..+... +|+.|++++|.... .++..+..++
T Consensus 168 ~~~~l~~L~---------------------~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~ 225 (570)
T 2z63_A 168 DLRVLHQMP---------------------LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA 225 (570)
T ss_dssp GGHHHHTCT---------------------TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT
T ss_pred Hccchhccc---------------------hhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc
Confidence 444444440 00 444555555444444444333 45555555443221 1223334444
Q ss_pred CCCEEEccCCcCC------CCCCCCCCCCC--cccEEEccCC-ccccccChhhhCCCCCCccccCCCcCcccccccccCC
Q 002896 372 SLSNLDLSENKLS------GSIPHSLGNLT--NLAILYLHSN-TLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL 442 (869)
Q Consensus 372 ~L~~L~Ls~n~l~------~~~~~~l~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 442 (869)
.++...+....+. ......+..++ .++.+++..+ .+.+..+..+..+++|++|++++|.+.+ +|..+..+
T Consensus 226 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~ 304 (570)
T 2z63_A 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF 304 (570)
T ss_dssp TCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC
T ss_pred ccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC
Confidence 4444433222111 01111122222 2344555555 4444555555555666666666555543 34444444
Q ss_pred CCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCC
Q 002896 443 THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLS 522 (869)
Q Consensus 443 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 522 (869)
+|+.|++++|.+. .+|. ..+++|+.|++++|.+.+.. +. ..+++|++|+++
T Consensus 305 -~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~-----------------------~~--~~~~~L~~L~l~ 355 (570)
T 2z63_A 305 -GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF-----------------------SE--VDLPSLEFLDLS 355 (570)
T ss_dssp -CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC-----------------------CC--CBCTTCCEEECC
T ss_pred -CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc-----------------------cc--ccCCCCCEEeCc
Confidence 5555555555554 2222 23444555555554444333 22 344455555555
Q ss_pred CCcccccC--CcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCcccc
Q 002896 523 HNNFYGQI--SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLF 599 (869)
Q Consensus 523 ~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 599 (869)
+|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred CCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 55554332 34445555666666666655543333 6666777777777777766554 35667777777777777777
Q ss_pred ccCcccccCCcccccccccccccc-ccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhh
Q 002896 600 GQLPSELGSLIQLEYLDLSSNRLS-NSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI 678 (869)
Q Consensus 600 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 678 (869)
+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++.+|..|
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 777777778888888888888887 5788888999999999999999988888889999999999999999988888889
Q ss_pred cCCCCCcEEeCCCCCCCCCcch
Q 002896 679 CNMRSLEMLNLSHNNLSDFIPR 700 (869)
Q Consensus 679 ~~l~~L~~L~Ls~N~l~~~~p~ 700 (869)
..+++|+.|++++|++++..|.
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred hcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999987663
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-48 Score=453.17 Aligned_cols=491 Identities=21% Similarity=0.236 Sum_probs=330.4
Q ss_pred cceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCc
Q 002896 205 LAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGE 284 (869)
Q Consensus 205 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 284 (869)
..+.+.+++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 334566666666 4555443 5777777777777766677777777777777777777766667777777777777777
Q ss_pred ccCCcccCccccCCCCCCeeecccccccC-CCCCcccCCCCCCeEeccCCccccccC-CCCcCccccceeeccCCcCCCC
Q 002896 285 NRLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIP-HYLGNLTNLAAFYLYKNSLSGS 362 (869)
Q Consensus 285 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~ 362 (869)
|++++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 77776666667777777777777777765 245566667777777777766433333 4566666666666666666666
Q ss_pred CccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcccccc--C-hhhhCCCCCCccccCCCcCcccccccc
Q 002896 363 IPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSI--P-REIGNLKSLFELQLGDNKLSNSISHSL 439 (869)
Q Consensus 363 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l 439 (869)
.|..+..+++|++|+++.|.+.......+..+++|++|++++|.+.+.. + .....+++|+.|++++|.+.+..+..+
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 6666666666666666665544221111233455555555555555421 1 111233444455555444443222111
Q ss_pred cCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCC-------CCcCCCCCCCEEECcCCcCcccc-----C
Q 002896 440 GNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSI-------PNLRNLTNLIRLRLNRNHLTCNI-----S 507 (869)
Q Consensus 440 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~l~~l~~L~~L~l~~n~l~~~~-----~ 507 (869)
+..+..+++|+.+++++|.+.+.. ..+..+.+++.+++.++.+.... +
T Consensus 244 --------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 244 --------------------LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp --------------------HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred --------------------HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 122233445555555555544321 13445566667776666544321 1
Q ss_pred ccccCCCCCCEEeCCCCcccccCCcCc-CCCCCCcEEEccCCCCCCCCC---cCcCCCCCCCEEEccCCcccccCC--cc
Q 002896 508 ESFGIHPKLTFIDLSHNNFYGQISSDW-GKCPNLGTFDVSVNNIIGSLP---PEIGDSSQLHVIDLSANHIIGKIP--SE 581 (869)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p--~~ 581 (869)
..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 12334467888888888876 445444 568888888888888887653 346778889999999998875432 45
Q ss_pred cccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccc
Q 002896 582 IGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 661 (869)
Q Consensus 582 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 661 (869)
+..+++|++|++++|++. .+|..+..+++|++|++++|++++ +|..+. ++|++|++++|++++.+ ..+++|+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCChhc
Confidence 778899999999999888 567788888999999999999874 343332 68999999999998764 5788999
Q ss_pred cccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCcccc
Q 002896 662 ELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFS 729 (869)
Q Consensus 662 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~ 729 (869)
+|+|++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|++|++++|+++|.||....+.
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~ 520 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHH
Confidence 9999999997 5665 4689999999999999999999999999999999999999999998544333
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.4e-48 Score=448.46 Aligned_cols=491 Identities=22% Similarity=0.212 Sum_probs=341.3
Q ss_pred CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc
Q 002896 70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP 149 (869)
Q Consensus 70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~ 149 (869)
.|.|.|+ |+..+ .+ ++ .+|+.+. ++|++|+|++|.+++..|..|+++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~~~~---------~~-l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGRS---------RS-FT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECTT---------SC-CS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECCC---------Cc-cc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4999998 86322 22 32 4565554 7899999999999988888999999999999999999988888
Q ss_pred ccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCC-CCCCccccccccceeeccccCCCCCCC-ccccCCC
Q 002896 150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKG-SIPPSLGNLTNLAILYLHNNSLSGSIP-SEIGNLK 227 (869)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~ 227 (869)
.|+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 89999999999999999987777778899999999999998876 356677888888888888887444443 4677777
Q ss_pred CCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCC-CCCCccCCccccCcccCCccc--C-ccccCCCCCCe
Q 002896 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSE-IGNLKSLSILELGENRLNGSI--P-LSLGNLTNLDT 303 (869)
Q Consensus 228 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~--p-~~l~~l~~L~~ 303 (869)
+|++|++++|.+++..|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|++.+.. | .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 77777777777777777777777777777777766542 2222 234566666666666665431 1 11223455666
Q ss_pred eecccccccCCCC----CcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEcc
Q 002896 304 LYLYTNSLSGSIP----SEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLS 379 (869)
Q Consensus 304 L~L~~n~~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 379 (869)
|++++|.+++..+ ..+..+++|+.+++++|.+.+..... ......+..+++|+.|++.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN------------------PSESDVVSELGKVETVTIR 289 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC------------------CCTTTCCCCCTTCCEEEEE
T ss_pred eeccccccchhHHHHHHHHhhhhcccccccccccccccccccc------------------ccchhhhhhhccccccccc
Confidence 6666655544322 22234455555555555544321000 0001123445566666666
Q ss_pred CCcCCCCC-----CCCCCCCCcccEEEccCCccccccChhh-hCCCCCCccccCCCcCccccc---ccccCCCCCCeEEc
Q 002896 380 ENKLSGSI-----PHSLGNLTNLAILYLHSNTLLGSIPREI-GNLKSLFELQLGDNKLSNSIS---HSLGNLTHMTLLAL 450 (869)
Q Consensus 380 ~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~l 450 (869)
++.+.... +..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++.+..+ ..++.+++|+.|++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 66544211 111122356777777777775 556554 467788888888888777653 23667778888888
Q ss_pred cCCCCcccCC--ccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccc
Q 002896 451 YDNALSGVIP--EELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG 528 (869)
Q Consensus 451 ~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 528 (869)
++|.+++..+ ..+..+++|++|++++|++.+....+..+++|++|++++|.++...... .++|++|++++|++++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDS 445 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSC
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh---cCCceEEECCCCChhh
Confidence 8888776532 4577788888888888888754446777888888888888876543222 2578999999998886
Q ss_pred cCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCc
Q 002896 529 QISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP 603 (869)
Q Consensus 529 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 603 (869)
.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 446 ~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 446 FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 53 46889999999999988 5665 4678899999999999998888889999999999999999877655
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-48 Score=455.79 Aligned_cols=457 Identities=21% Similarity=0.299 Sum_probs=324.4
Q ss_pred CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccC------CC------CCCcccCCCCCCCEEEcCCCCCCCCCCcc
Q 002896 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF------SG------RIPPQIGHLSYIEALHLFKNQLSGPIPHE 174 (869)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~------~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 174 (869)
.+++.|+|+++.+.|.+|+++++|++|++|+|++|.+ .| .+|... +..|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4789999999999999999999999999999999976 22 233322 33444 555555555555544
Q ss_pred ccC-CCcCceeeccCcccCCCCCCccccccccceeecc--ccCCCCCCCccccCCCCCCEEEccCCcCCCC---------
Q 002896 175 VGG-LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH--NNSLSGSIPSEIGNLKSLSSLALGNNKLCGS--------- 242 (869)
Q Consensus 175 ~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--------- 242 (869)
+.. +..+..+++....+.. .....++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 432 2223333333222211 112233333333 577887 888899999999999999999885
Q ss_pred --------cccccC--CCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCccc-CCc-ccCccccCC------CCCCee
Q 002896 243 --------IPLFLG--NLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR-LNG-SIPLSLGNL------TNLDTL 304 (869)
Q Consensus 243 --------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~-~~p~~l~~l------~~L~~L 304 (869)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 888888 99999999999999999999999999999999999998 887 788877776 889999
Q ss_pred ecccccccCCCCC--cccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCC-CCEEEccCC
Q 002896 305 YLYTNSLSGSIPS--EIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKS-LSNLDLSEN 381 (869)
Q Consensus 305 ~L~~n~~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n 381 (869)
++++|.++ .+|. .++++++|+.|++++|.++|.+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 99999988 7887 88899999999999999988888 8888889999999999888 77777888888 888888888
Q ss_pred cCCCCCCCCCCCCC--cccEEEccCCccccccChhhh-------CCCCCCccccCCCcCcccccccccCCCCCCeEEccC
Q 002896 382 KLSGSIPHSLGNLT--NLAILYLHSNTLLGSIPREIG-------NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYD 452 (869)
Q Consensus 382 ~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 452 (869)
.++ .+|..+..++ +|++|++++|.+.+.+|..+. .+++|++|++++|+++...+..+..+++|+.|++++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 888 6777776544 788888888888777776666 455555566655555533333334455555555555
Q ss_pred CCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCcccc--CCCCCCEEeCCCCcccccC
Q 002896 453 NALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG--IHPKLTFIDLSHNNFYGQI 530 (869)
Q Consensus 453 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~ 530 (869)
|.++ .+|..... +..+.+.++++|++|++++|.++ .+|..+. .+++|++|++++|++++ +
T Consensus 467 N~l~-~i~~~~~~---------------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 467 NMLT-EIPKNSLK---------------DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp SCCS-BCCSSSSE---------------ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred CCCC-CcCHHHhc---------------cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence 5544 22221100 00001234459999999999999 5666776 89999999999999998 7
Q ss_pred CcCcCCCCCCcEEEccC------CCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc
Q 002896 531 SSDWGKCPNLGTFDVSV------NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL 598 (869)
Q Consensus 531 ~~~~~~~~~L~~L~ls~------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 598 (869)
|..+..+++|++|++++ |++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|++++|++
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 88888999999999955 445555555555555555555555555 34444433 4444444444443
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-45 Score=438.13 Aligned_cols=526 Identities=21% Similarity=0.202 Sum_probs=324.3
Q ss_pred CCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccC
Q 002896 146 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGN 225 (869)
Q Consensus 146 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 225 (869)
.+|..+. +++++|||++|.+++..|.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 5665442 36777777777777665666777777777777777776666666666666666666666666555555666
Q ss_pred CCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC-CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCee
Q 002896 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS-SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTL 304 (869)
Q Consensus 226 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 304 (869)
+++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+++++.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~- 201 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL- 201 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT-
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh-
Confidence 6666666666666665555556666666666666666553 23444555555555555555555544444433322221
Q ss_pred ecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCC-CccccCCCCCCCEEEccCCc-
Q 002896 305 YLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGS-IPSEIGNLKSLSNLDLSENK- 382 (869)
Q Consensus 305 ~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~- 382 (869)
....++++.|.+....+..+. ...++.+++.+|..... .+..+..++.++...+..+.
T Consensus 202 -------------------~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 202 -------------------LNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp -------------------CCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred -------------------hhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 112344444444433332222 22344445544433321 12223344444444332221
Q ss_pred -----CCCCCCCCCCCCCcccEEEccCCcccc---ccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCC
Q 002896 383 -----LSGSIPHSLGNLTNLAILYLHSNTLLG---SIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNA 454 (869)
Q Consensus 383 -----l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 454 (869)
+.......+..+..+....+..+.... ..+..+..+.+++.+++.++.+.... .+.....++.|++.+|.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCK 339 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCE
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhccccc
Confidence 111222233334444444443332211 12233344445555555555443322 13334445555555554
Q ss_pred CcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccc--cCCc
Q 002896 455 LSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYG--QISS 532 (869)
Q Consensus 455 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~ 532 (869)
+.+..+. .+..|+.+++..|...... .+..+++|+.+++++|.+.. ..+.
T Consensus 340 ~~~~~~~--------------------------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 340 FGQFPTL--------------------------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp ESSCCCC--------------------------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred ccCcCcc--------------------------cchhhhhcccccccCCCCc--ccccccccccchhhcccccccccccc
Confidence 4433221 2333444444444332221 22344555555555555532 2333
Q ss_pred CcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCcccccCCcc
Q 002896 533 DWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQ 611 (869)
Q Consensus 533 ~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 611 (869)
.+..+.+|+.+++..|.... .+..+..+++|+.+++++|+.....+ ..+..+++++.++++.|.+.+..+..+..+++
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 34455666666666665543 33456667777777777776665444 34667888888888888888888888888999
Q ss_pred ccccccccccc-cccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896 612 LEYLDLSSNRL-SNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690 (869)
Q Consensus 612 L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 690 (869)
|++|++++|.+ .+..|..|..+++|++|||++|++++.+|..|.++++|++|+|++|+|++..|..|..+++|++|||+
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 99999999875 44678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhcC-CCCcEEEccCCcccccCCCC
Q 002896 691 HNNLSDFIPRCFEEM-NGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 691 ~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~~p~~ 725 (869)
+|+|++.+|..|..+ ++|++|++++|||+|.|...
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 999999999999988 68999999999999999743
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=435.49 Aligned_cols=460 Identities=21% Similarity=0.196 Sum_probs=334.4
Q ss_pred CEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccc
Q 002896 230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTN 309 (869)
Q Consensus 230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n 309 (869)
+++++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57888888888 5666655 78888888888888777677888888888888888888777888888888888888888
Q ss_pred cccCCCCCcccCCCCCCeEeccCCcccc-ccCCCCcCccccceeeccCCcCCCCCccccCCCCCC--CEEEccCCcC--C
Q 002896 310 SLSGSIPSEIGNLKSLSGLELADNELSS-SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL--SNLDLSENKL--S 384 (869)
Q Consensus 310 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~ 384 (869)
.++ .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 887 45554 77888888888888877 467778888888888888888775 345666677 8888888887 6
Q ss_pred CCCCCCCCCCC-cccEEEccCCccccccC-hhhhCCCCCCccccCCCc-------CcccccccccCCCCCCeEEccCCCC
Q 002896 385 GSIPHSLGNLT-NLAILYLHSNTLLGSIP-REIGNLKSLFELQLGDNK-------LSNSISHSLGNLTHMTLLALYDNAL 455 (869)
Q Consensus 385 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L~l~~n~l 455 (869)
+..|..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 67777766654 23355666776665444 345666777777777765 444444 455666666666666655
Q ss_pred cccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccc-----cCCCCCCEEeCCCCcccccC
Q 002896 456 SGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESF-----GIHPKLTFIDLSHNNFYGQI 530 (869)
Q Consensus 456 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~l~~~~ 530 (869)
++..+..+.. ....++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+
T Consensus 233 ~~~~~~~~~~--------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~ 290 (520)
T 2z7x_B 233 TWNSFIRILQ--------------------LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF 290 (520)
T ss_dssp EHHHHHHHHH--------------------HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS
T ss_pred CHHHHHHHHH--------------------HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec
Confidence 5432211110 0012345555555555554444444 5556666666666665 23
Q ss_pred C-cCcCCC---CCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccc--cCcc
Q 002896 531 S-SDWGKC---PNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFG--QLPS 604 (869)
Q Consensus 531 ~-~~~~~~---~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~ 604 (869)
| ..+..+ .+|+.|++++|.+.+.. ....+++|++|++++|++++.+|..++.+++|++|++++|++.+ .+|.
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence 3 222222 45777777777665432 12567778888888888887777778888888888888888876 4567
Q ss_pred cccCCccccccccccccccccccc-cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCC
Q 002896 605 ELGSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRS 683 (869)
Q Consensus 605 ~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 683 (869)
.+..+++|++|++++|.+++.+|. .+..+++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~ 445 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA 445 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC
Confidence 788889999999999999885554 488899999999999999888877664 78999999999997 77887789999
Q ss_pred CcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896 684 LEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726 (869)
Q Consensus 684 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~ 726 (869)
|++|++++|++++..+..+..+++|++|++++|+++|.|+..+
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchH
Confidence 9999999999997555559999999999999999999988543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-46 Score=445.26 Aligned_cols=465 Identities=18% Similarity=0.214 Sum_probs=328.3
Q ss_pred CCCCEEEccCCcCCCCcccccCCCCCCCEEEc-cCCCCCCCCCCCCCCC----cc--CCcccc----------CcccCCc
Q 002896 227 KSLSSLALGNNKLCGSIPLFLGNLTNLDTLYL-RNNSFSSSIPSEIGNL----KS--LSILEL----------GENRLNG 289 (869)
Q Consensus 227 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l----~~--L~~L~L----------~~n~~~~ 289 (869)
..++.|+|+++.+.|.+|..++++++|++|+| ++|.++|..|...... .. ++.+.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 35677777777777777777777777777777 6666655432111000 00 000000 0000000
Q ss_pred c-----------cCccccCCCCCCeeeccc--ccccCCCCCcccCCCCCCeEeccCCcccc-----------------cc
Q 002896 290 S-----------IPLSLGNLTNLDTLYLYT--NSLSGSIPSEIGNLKSLSGLELADNELSS-----------------SI 339 (869)
Q Consensus 290 ~-----------~p~~l~~l~~L~~L~L~~--n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~ 339 (869)
. .+........++.+.+.. |.+++ +|..++++++|+.|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 000011222333333333 55655 56666666666666666666666 37
Q ss_pred CCCCc--CccccceeeccCCcCCCCCccccCCCCCCCEEEccCCc-CCC-CCCCCCC-------CCCcccEEEccCCccc
Q 002896 340 PHYLG--NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENK-LSG-SIPHSLG-------NLTNLAILYLHSNTLL 408 (869)
Q Consensus 340 ~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~l~-------~l~~L~~L~L~~n~l~ 408 (869)
|..++ ++++|+.|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..++ .+++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 77766 78888888888888888888888888888888888887 776 6665444 3448888888888887
Q ss_pred cccCh--hhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCC-CcEEecCCCcCcCCCCC
Q 002896 409 GSIPR--EIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVK-LTMLTLSDNQLQGSIPN 485 (869)
Q Consensus 409 ~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~ 485 (869)
.+|. .+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+......
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 6777 7888888888888888887 566 7788888888888888887 67777888887 88888888888733324
Q ss_pred cCCCC--CCCEEECcCCcCccccCccc---c--CCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCc
Q 002896 486 LRNLT--NLIRLRLNRNHLTCNISESF---G--IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI 558 (869)
Q Consensus 486 l~~l~--~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 558 (869)
+..++ +|+.|++++|.+.+.+|... . ..++|+.|++++|.++...+..+..+++|+.|++++|++. .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 44443 38888888888877655322 2 3357889999999888443334457889999999999888 566544
Q ss_pred CC--------CCCCCEEEccCCcccccCCcccc--cCcccceeeccCccccccCcccccCCccccccccccccccccccc
Q 002896 559 GD--------SSQLHVIDLSANHIIGKIPSEIG--KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628 (869)
Q Consensus 559 ~~--------l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 628 (869)
.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++.+ +|..+..+++|+.|+|++|+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------- 787 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------- 787 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------
Confidence 33 338999999999998 7788886 88888888888888887 67777788888888888876
Q ss_pred cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCC
Q 002896 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 708 (869)
Q Consensus 629 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 708 (869)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+
T Consensus 788 -----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~ 853 (876)
T 4ecn_A 788 -----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA 853 (876)
T ss_dssp -----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHT
T ss_pred -----------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccc
Confidence 6677888888888888888888888888888 77777755 689999999999988877777766667
Q ss_pred cEEEccCCcccc
Q 002896 709 LYIDISYNELHG 720 (869)
Q Consensus 709 ~~L~ls~N~l~g 720 (869)
..+.+.+|++..
T Consensus 854 ~~~~L~~n~~~~ 865 (876)
T 4ecn_A 854 GMYVLLYDKTQD 865 (876)
T ss_dssp TCCEEECCTTSE
T ss_pred hheeecCCCccc
Confidence 777888887764
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-44 Score=428.23 Aligned_cols=564 Identities=23% Similarity=0.205 Sum_probs=369.2
Q ss_pred cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896 98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG 177 (869)
Q Consensus 98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (869)
.+|+.+. +++++|||++|.+++..+.+|.++++|++|+|++|.+++..|.+|+++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3555543 47999999999999877889999999999999999999877889999999999999999999777778999
Q ss_pred CCcCceeeccCcccCCCCCCccccccccceeeccccCCCC-CCCccccCCCCCCEEEccCCcCCCCcccccCCCCC----
Q 002896 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSG-SIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN---- 252 (869)
Q Consensus 178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---- 252 (869)
+++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999998888889999999999999999976 46788899999999999999999888877765444
Q ss_pred CCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcc-cCccccCCCCCCeeecccccccC------CCCCcccCCCCC
Q 002896 253 LDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGS-IPLSLGNLTNLDTLYLYTNSLSG------SIPSEIGNLKSL 325 (869)
Q Consensus 253 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~------~~p~~l~~l~~L 325 (869)
...++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++...+..+.... .....+..+..+
T Consensus 203 ~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 3478888888875554444 444567788887765432 23345667777766655433221 111222333333
Q ss_pred CeEeccCCcccc---ccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEc
Q 002896 326 SGLELADNELSS---SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYL 402 (869)
Q Consensus 326 ~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 402 (869)
...++..+.... ..+..+..+.+++.+.+.++.+.... .+....+++.|++.+|.+.+..+. .++.|+.+++
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l 356 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTF 356 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEE
T ss_pred hhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhccc
Confidence 333333222111 12223334444555555554443321 233344555555555554433221 2334444444
Q ss_pred cCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcc--cCCccccCCCCCcEEecCCCcCc
Q 002896 403 HSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG--VIPEELGNLVKLTMLTLSDNQLQ 480 (869)
Q Consensus 403 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~ 480 (869)
..|... ... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+...
T Consensus 357 ~~n~~~------------------------~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~ 410 (635)
T 4g8a_A 357 TSNKGG------------------------NAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410 (635)
T ss_dssp ESCCSC------------------------CBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred ccccCC------------------------CCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence 444433 211 12234455555555554432 23344445555666666666555
Q ss_pred CCCCCcCCCCCCCEEECcCCcCcccc-CccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCC-CCCCcCc
Q 002896 481 GSIPNLRNLTNLIRLRLNRNHLTCNI-SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNII-GSLPPEI 558 (869)
Q Consensus 481 ~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~p~~l 558 (869)
...+.+..+++|+.+++..+...... ...|..+++++.++++.|.+.+..+..+..+++++.|++++|.+. +..|..+
T Consensus 411 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~ 490 (635)
T 4g8a_A 411 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh
Confidence 54445566666666666666544333 345666777777777777777777777777777777777777643 3466777
Q ss_pred CCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCC-CCCC
Q 002896 559 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL-VKLH 637 (869)
Q Consensus 559 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~ 637 (869)
..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|||++|++++..|..+..+ ++|+
T Consensus 491 ~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 888888888888888888778888888888888888888888888888888888888888888888888888887 6788
Q ss_pred eeeCcCCcCCcccc-hhhhc-ccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCC
Q 002896 638 YLNLSTNQFIQEIP-IKLEK-LIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDF 697 (869)
Q Consensus 638 ~L~Ls~N~l~~~~p-~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 697 (869)
.|+|++|++.-... .+|.. +..-.........+.-.-|..+.+ ..+..+|++ |+++|-
T Consensus 571 ~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g-~~l~~~~~~-C~~~g~ 630 (635)
T 4g8a_A 571 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVLSLNIT-CQMTGH 630 (635)
T ss_dssp EEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTT-CBGGGCCCC-C-----
T ss_pred EEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCC-CEeeeeccC-CCCCCC
Confidence 88888888864322 11211 111111111112233334555544 345566764 777774
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=424.91 Aligned_cols=457 Identities=20% Similarity=0.198 Sum_probs=302.2
Q ss_pred ceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCC
Q 002896 182 NELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNN 261 (869)
Q Consensus 182 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 261 (869)
++|++++|.++. +|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 456666666663 444443 56666666666666555556666666666666666666555666666666666666666
Q ss_pred CCCCCCCCCCCCCccCCccccCcccCCc-ccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccC
Q 002896 262 SFSSSIPSEIGNLKSLSILELGENRLNG-SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIP 340 (869)
Q Consensus 262 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 340 (869)
+++ .+|.. .+++|++|++++|++++ .+|..++++++|++|++++|.+++ ..+..+++|
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L--------------- 138 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL--------------- 138 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS---------------
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc---------------
Confidence 665 34433 45555555555555554 244555555555555555555543 123333444
Q ss_pred CCCcCccccceeeccCCcC--CCCCccccCCCC-CCCEEEccCCcCCCCCC-CCCCCCCcccEEEccCCc-------ccc
Q 002896 341 HYLGNLTNLAAFYLYKNSL--SGSIPSEIGNLK-SLSNLDLSENKLSGSIP-HSLGNLTNLAILYLHSNT-------LLG 409 (869)
Q Consensus 341 ~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------l~~ 409 (869)
+|+.|++++|.+ .+..|..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|. +.+
T Consensus 139 -------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 139 -------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp -------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred -------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 115555555555 444444444333 12234555665554433 345567777777777776 555
Q ss_pred ccChhhhCCCCCCccccCCCcCccccccccc---CCCCCCeEEccCCCCcccCCccc-----cCCCCCcEEecCCCcCcC
Q 002896 410 SIPREIGNLKSLFELQLGDNKLSNSISHSLG---NLTHMTLLALYDNALSGVIPEEL-----GNLVKLTMLTLSDNQLQG 481 (869)
Q Consensus 410 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~ 481 (869)
.++ .+..+++|+.|++++|.+++..+..+. ..++|+.|++++|.+++.+|..+ ..+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 444 677778888888887777653322211 23577888888887777777765 5555555555555544
Q ss_pred CCCCcCCCCCCCEEECcCCcCccccCccccCC---CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCc
Q 002896 482 SIPNLRNLTNLIRLRLNRNHLTCNISESFGIH---PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEI 558 (869)
Q Consensus 482 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 558 (869)
.+| ...+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+
T Consensus 289 ~~p----------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 289 GFP----------------------QSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp CSC----------------------THHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred ecc----------------------hhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 111 1122111 35666666666654322 12567788888888888888788888
Q ss_pred CCCCCCCEEEccCCcccc--cCCcccccCcccceeeccCccccccCcc-cccCCccccccccccccccccccccccCCCC
Q 002896 559 GDSSQLHVIDLSANHIIG--KIPSEIGKLSSLIKLILRRNQLFGQLPS-ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVK 635 (869)
Q Consensus 559 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 635 (869)
..+++|++|++++|++++ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 888888888888888886 5667788889999999999999885554 478889999999999999988887765 79
Q ss_pred CCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 636 LHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 636 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
|+.|++++|+++ .+|..+..+++|++|+|++|+++...+..+..+++|++|++++|++++..+
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999997 788888899999999999999985444459999999999999999998654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-43 Score=412.64 Aligned_cols=465 Identities=21% Similarity=0.185 Sum_probs=310.2
Q ss_pred CCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeee
Q 002896 226 LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 305 (869)
Q Consensus 226 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 305 (869)
+...+++++++|.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3345788888888874 665543 6788888888888776667777788888888888877777777777777788888
Q ss_pred cccccccCCCCCcccCCCCCCeEeccCCccccc-cCCCCcCccccceeeccCCcCCCCCccccCCCCCC--CEEEccCCc
Q 002896 306 LYTNSLSGSIPSEIGNLKSLSGLELADNELSSS-IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL--SNLDLSENK 382 (869)
Q Consensus 306 L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~ 382 (869)
+++|.++ .+|.. .+++|++|++++|.+++. .|..++++++|++|++++|.+++. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 8777776 45544 677777777777777763 356677777777777777776653 23334444 777777776
Q ss_pred C--CCCCCCCCCCCC--cccEEEccCCccccccCh-hhhCCCCCCccccCCCcCc----ccccccccCCCCCCeEEccCC
Q 002896 383 L--SGSIPHSLGNLT--NLAILYLHSNTLLGSIPR-EIGNLKSLFELQLGDNKLS----NSISHSLGNLTHMTLLALYDN 453 (869)
Q Consensus 383 l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~l~~n 453 (869)
+ ++..|..+..+. .+ .++++.|.+.+.++. .+..+++|+.+++++|+.. ......+..+++|+.+++.++
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 6 666665555433 22 345555555543332 2344555555555555311 001122344444444444444
Q ss_pred CCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccc-----cCCCCCCEEeCCCCcccc
Q 002896 454 ALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESF-----GIHPKLTFIDLSHNNFYG 528 (869)
Q Consensus 454 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~l~~ 528 (869)
.+.+.... +.. .....++|++|++++|.+++.+|..+ ..++.|+.++++.+.+
T Consensus 260 ~l~~~~~~-------------------~~~-~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-- 317 (562)
T 3a79_B 260 ETTWKCSV-------------------KLF-QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-- 317 (562)
T ss_dssp EECHHHHH-------------------HHH-HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--
T ss_pred cCcHHHHH-------------------HHH-HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--
Confidence 33321100 000 11112355555665555555555444 3444444444444444
Q ss_pred cCCc-CcC---CCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCcccccc--C
Q 002896 529 QISS-DWG---KCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ--L 602 (869)
Q Consensus 529 ~~~~-~~~---~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~ 602 (869)
.+|. .+. ...+|++|++++|.+.... ....+++|++|++++|++++.+|..++++++|++|++++|++.+. .
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence 2221 111 1246778888877765322 125677888888888888888888888888888888888888874 3
Q ss_pred cccccCCccccccccccccccccccc-cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCC
Q 002896 603 PSELGSLIQLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNM 681 (869)
Q Consensus 603 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 681 (869)
|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 56788899999999999999884554 588899999999999999887776654 78999999999996 677777799
Q ss_pred CCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCcc
Q 002896 682 RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTA 727 (869)
Q Consensus 682 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~ 727 (869)
++|++|+|++|++++..+..+..+++|+++++++|+++|.||..+.
T Consensus 473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 9999999999999975555599999999999999999999985543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.9e-42 Score=398.32 Aligned_cols=455 Identities=20% Similarity=0.205 Sum_probs=282.8
Q ss_pred ceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcc
Q 002896 206 AILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGEN 285 (869)
Q Consensus 206 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 285 (869)
+++++++|.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 444444444442 333332 44555555555555444445555555555555555555444555555555555555555
Q ss_pred cCCcccCccccCCCCCCeeecccccccC-CCCCcccCCCCCCeEeccCCccccccCCCCcCcccc--ceeeccCCcC--C
Q 002896 286 RLNGSIPLSLGNLTNLDTLYLYTNSLSG-SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL--AAFYLYKNSL--S 360 (869)
Q Consensus 286 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~ 360 (869)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|+.|++++|.+++. .+..+++| +.|++++|.+ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 554 33333 45555555555555554 2344555555566666655555542 23333333 6666666666 5
Q ss_pred CCCccccCCCC--CCCEEEccCCcCCCCCCC-CCCCCCcccEEEccCCccc----cccChhhhCCCCCCccccCCCcCcc
Q 002896 361 GSIPSEIGNLK--SLSNLDLSENKLSGSIPH-SLGNLTNLAILYLHSNTLL----GSIPREIGNLKSLFELQLGDNKLSN 433 (869)
Q Consensus 361 ~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~ 433 (869)
+..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|... ......+..++.|+.++++++.+.+
T Consensus 185 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 55555554433 22 446666666554432 3456777888888777421 1122456777888888887776654
Q ss_pred ccccc---ccCCCCCCeEEccCCCCcccCCccc-----cCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccc
Q 002896 434 SISHS---LGNLTHMTLLALYDNALSGVIPEEL-----GNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN 505 (869)
Q Consensus 434 ~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~ 505 (869)
..... ....++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+|
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p--------------------- 320 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS--------------------- 320 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC---------------------
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC---------------------
Confidence 32111 1123477788888887777777655 3333333333333332 111
Q ss_pred cCcccc---CCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccc--cCCc
Q 002896 506 ISESFG---IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG--KIPS 580 (869)
Q Consensus 506 ~~~~~~---~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~ 580 (869)
...+. ...+|++|++++|.+.... ....+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|.
T Consensus 321 -~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 321 -KEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp -HHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred -hhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 01111 1245666777766664322 12567778888888888887778888888888888888888876 3345
Q ss_pred ccccCcccceeeccCccccccCc-ccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccc
Q 002896 581 EIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH 659 (869)
Q Consensus 581 ~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 659 (869)
.+.++++|+.|++++|++.+.+| ..+..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 67788888888888888887444 4577889999999999999887776665 78999999999987 67777779999
Q ss_pred cccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
|++|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus 475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999999985444448999999999999999998654
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.3e-42 Score=365.76 Aligned_cols=292 Identities=31% Similarity=0.566 Sum_probs=210.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCc--cCceeeCCC---CCEEEEeCCCCCcccc--cCCcCCC
Q 002896 32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCA--WFGIHCNHV---GRVNSINLTNVNQIFG--IIPPQIG 104 (869)
Q Consensus 32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~~l~~--~~~~~l~ 104 (869)
.|.++|++||++||+++.+ | . .+++|. .+++||. |.||+|+.. ++|+.+++++.. +.| .+|+.++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~-~-~-~l~~W~----~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~~~~~~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN-P-T-TLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPIPSSLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC-C-G-GGTTCC----TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEECCGGGG
T ss_pred CCCHHHHHHHHHHHHhcCC-c-c-cccCCC----CCCCCCcCCCcceEeCCCCCCceEEEEECCCCC-ccCCcccChhHh
Confidence 5889999999999999964 4 3 689997 5678998 999999853 789999998887 888 7888888
Q ss_pred CCCCCcEEeCCC-CCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896 105 NISKLKYLDLSS-NSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183 (869)
Q Consensus 105 ~l~~L~~L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (869)
++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+.+.+|..|+++++|++|++++|.+++.+|..++++++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 888888888885 8888888888888888888888888888788888888888888888888887777777777777777
Q ss_pred eeccCcccCCCCCCcccccc-ccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896 184 LALTSNFLKGSIPPSLGNLT-NLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262 (869)
Q Consensus 184 L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (869)
|++++|++++.+|..+++++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 77777777777777777776 777777777777766676666665 7777777777666666666666666666666666
Q ss_pred CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCc
Q 002896 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNE 334 (869)
Q Consensus 263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 334 (869)
+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|.. ..+++|+.+++++|.
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 6544443 444555555555555555555555555555555555555555444443 444444444444444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-40 Score=376.35 Aligned_cols=386 Identities=22% Similarity=0.228 Sum_probs=284.5
Q ss_pred CeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCC-CCCCCCCCcccEEEccC
Q 002896 326 SGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSI-PHSLGNLTNLAILYLHS 404 (869)
Q Consensus 326 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~ 404 (869)
+.++.+++.++. +|. + .++|++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 346666666653 333 2 267788888888887777777888888888888888776444 45677778888888888
Q ss_pred CccccccChhhhCCCCCCccccCCCcCccccccc--ccCCCCCCeEEccCCCCcccCCcc-ccCCCCCcEEecCCCcCcC
Q 002896 405 NTLLGSIPREIGNLKSLFELQLGDNKLSNSISHS--LGNLTHMTLLALYDNALSGVIPEE-LGNLVKLTMLTLSDNQLQG 481 (869)
Q Consensus 405 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~ 481 (869)
|.+.+..|..+.++++|++|++++|.+++..+.. +..+++|+.|++++|.+++..|.. +.++++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8877777777777788888888888777654443 677777777777777777766655 6677777777777777766
Q ss_pred CCC-CcCCC--CCCCEEECcCCcCccccCccc--------cCCCCCCEEeCCCCcccccCCcCcCC---CCCCcEEEccC
Q 002896 482 SIP-NLRNL--TNLIRLRLNRNHLTCNISESF--------GIHPKLTFIDLSHNNFYGQISSDWGK---CPNLGTFDVSV 547 (869)
Q Consensus 482 ~~~-~l~~l--~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~L~~L~ls~ 547 (869)
..+ .+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+.. .++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 544 33332 456666666666655443322 23345556666666555544443322 24555555555
Q ss_pred CCCCCCCCcCcCCCCCCCEEEccCCcccccCCccccc--CcccceeeccCccccccCcccccCCcccccccccccccccc
Q 002896 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGK--LSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS 625 (869)
Q Consensus 548 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 625 (869)
|...+... ..+.+.+..+..+.. .++|+.|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 249 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 54433211 111222222223333 36899999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcC
Q 002896 626 IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM 705 (869)
Q Consensus 626 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 705 (869)
.|..|.++++|++|+|++|++.+..|..++++++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 89999999999999999999999889999999999999999999999999999999999999999999999888889999
Q ss_pred CCCcEEEccCCcccccCCCCcccc
Q 002896 706 NGLLYIDISYNELHGPIPNSTAFS 729 (869)
Q Consensus 706 ~~L~~L~ls~N~l~g~~p~~~~~~ 729 (869)
++|++|++++|+++|.||....+.
T Consensus 395 ~~L~~L~l~~N~l~~~~~~~~~l~ 418 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCPRIDYLS 418 (455)
T ss_dssp TTCCEEECCSSCBCCCTTTTHHHH
T ss_pred CcccEEEccCCCcccCCCcchHHH
Confidence 999999999999999999655443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.6e-40 Score=373.28 Aligned_cols=360 Identities=23% Similarity=0.228 Sum_probs=230.5
Q ss_pred CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCC-CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI-PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA 185 (869)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 185 (869)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888899999999999999999987666 56789999999999999999988888999999999999
Q ss_pred ccCcccCCCCCCc--cccccccceeeccccCCCCCCCcc-ccCCCCCCEEEccCCcCCCCcccccCCC--CCCCEEEccC
Q 002896 186 LTSNFLKGSIPPS--LGNLTNLAILYLHNNSLSGSIPSE-IGNLKSLSSLALGNNKLCGSIPLFLGNL--TNLDTLYLRN 260 (869)
Q Consensus 186 L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~ 260 (869)
+++|.+++..+.. +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999988755444 888888999999998888877766 7888888888888888888777777655 6788888888
Q ss_pred CCCCCCCCCCC--------CCCccCCccccCcccCCcccCccccCC---CCCCeeecccccccCCCCCcccCCCCCCeEe
Q 002896 261 NSFSSSIPSEI--------GNLKSLSILELGENRLNGSIPLSLGNL---TNLDTLYLYTNSLSGSIPSEIGNLKSLSGLE 329 (869)
Q Consensus 261 n~l~~~~~~~l--------~~l~~L~~L~L~~n~~~~~~p~~l~~l---~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 329 (869)
|.+.+..+..+ ..+++|++|++++|++.+..|..+... ++|+.|++++|...+...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------- 256 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------- 256 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-------------
Confidence 88776544332 245667777777777766666554432 566666666665443211
Q ss_pred ccCCccccccCCCCcC--ccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcc
Q 002896 330 LADNELSSSIPHYLGN--LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407 (869)
Q Consensus 330 Ls~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 407 (869)
..+.+....+..+.. .++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..|..+++|++|++++|.+
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 257 -GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp -TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 011111111111111 13455555555555544444455555555555555555544444444555555555555554
Q ss_pred ccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCc
Q 002896 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480 (869)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 480 (869)
.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 4444444444444444444444444444444444444444444444444433333344444444444444443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.6e-39 Score=360.32 Aligned_cols=425 Identities=24% Similarity=0.312 Sum_probs=183.6
Q ss_pred CCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceee
Q 002896 130 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209 (869)
Q Consensus 130 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 209 (869)
.++|++|++++|.+ |.+|.+++++++|++|++++|.++|.+|..++++++|+.+++..|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 35555555555555 45555555555555555555555555555555555555554444431 2455666
Q ss_pred ccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCc
Q 002896 210 LHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNG 289 (869)
Q Consensus 210 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 289 (869)
+++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++++ +|.. .++|++|++++|++++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 66665553 2221 2455666666665554 3432 2455556665555553 2211 1345555555555553
Q ss_pred ccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCC
Q 002896 290 SIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGN 369 (869)
Q Consensus 290 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 369 (869)
+| .++++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++.+++|+.|++++|.+++
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-------- 209 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-------- 209 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--------
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc--------
Confidence 34 35555555555555555543 33221 345555555555444 22 34444455555555544443
Q ss_pred CCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEE
Q 002896 370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 449 (869)
Q Consensus 370 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 449 (869)
+|... ++|++|++++|.+. .+| .++.+++|++|++++|++++. |. ..++|+.|+
T Consensus 210 -----------------l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ 263 (454)
T 1jl5_A 210 -----------------LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALN 263 (454)
T ss_dssp -----------------CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEE
T ss_pred -----------------CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEE
Confidence 22111 24445555555444 333 244445555555555544432 11 124555555
Q ss_pred ccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCccccc
Q 002896 450 LYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ 529 (869)
Q Consensus 450 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ 529 (869)
+++|.+++ +|.. .++|++|++++|.+.+.. .+ .++|++|++++|.+++... ..++|++|++++|++++
T Consensus 264 l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~~--~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~- 331 (454)
T 1jl5_A 264 VRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-EL--PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIE- 331 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-CC--CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSC-
T ss_pred CCCCcccc-cCcc---cCcCCEEECcCCccCccc-Cc--CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccc-
Confidence 55555554 2221 255666666666665421 11 2567777777777664221 12477888888888776
Q ss_pred CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccc--cCCcccccCcccceeeccCccccccCccccc
Q 002896 530 ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIG--KIPSEIGKLSSLIKLILRRNQLFGQLPSELG 607 (869)
Q Consensus 530 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 607 (869)
+|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+.. ++.|.+.+.+|.
T Consensus 332 lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~--- 393 (454)
T 1jl5_A 332 LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE--- 393 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------
T ss_pred cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc---
Confidence 4433 5778888888888874 555 46788888888888887 66665543 234666666665
Q ss_pred CCccccccccccccccc--cccccccCCCCCCeeeCcCCcCCcccchhhhc
Q 002896 608 SLIQLEYLDLSSNRLSN--SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK 656 (869)
Q Consensus 608 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 656 (869)
.+++|++|++++|++++ .+| .+++.|.+.+|.+.+.++.....
T Consensus 394 ~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp ---------------------------------------------------
T ss_pred ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHH
Confidence 35789999999999987 555 34677788888888777655543
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.7e-39 Score=359.37 Aligned_cols=416 Identities=25% Similarity=0.325 Sum_probs=252.3
Q ss_pred cCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCC-------------CEEEcCCCCC
Q 002896 101 PQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYI-------------EALHLFKNQL 167 (869)
Q Consensus 101 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L-------------~~L~L~~n~l 167 (869)
|.-.+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|..++++.+| ++|++++|.+
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 3333568899999999999 7899999999999999999999999999999888765 9999999988
Q ss_pred CCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCccccc
Q 002896 168 SGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFL 247 (869)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 247 (869)
++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. |.. .++|++|++++|.+++ +| .+
T Consensus 84 ~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~ 149 (454)
T 1jl5_A 84 SS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-EL 149 (454)
T ss_dssp SC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CC
T ss_pred cc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-cc
Confidence 85 3432 3688999999999887 5543 37889999999988752 221 1688999999998886 66 58
Q ss_pred CCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCe
Q 002896 248 GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSG 327 (869)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 327 (869)
+++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++++++|++|++++|.+++ +|.. .++|+.
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence 888999999999998885 55543 488899999998886 55 58888899999999988875 4433 258888
Q ss_pred EeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcc
Q 002896 328 LELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407 (869)
Q Consensus 328 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 407 (869)
|++++|.++ .+| .++.+++|++|++++|++++ +|. .+++|++|++++|++++ +|.. .++|+.|++++|.+
T Consensus 220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 999988888 455 37888888999998888875 443 24788888888888886 4443 36788888888888
Q ss_pred ccccChhhhCCCCCCccccCCCcCcccccccccCC-CCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCc
Q 002896 408 LGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNL-THMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNL 486 (869)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l 486 (869)
.+. |. -.++|++|++++|++++. ..+ ++|+.|++++|++++ +|.. +++|++|++++|++.+ +|.
T Consensus 290 ~~l-~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~- 354 (454)
T 1jl5_A 290 SGL-SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE- 354 (454)
T ss_dssp SEE-SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-
T ss_pred Ccc-cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-
Confidence 752 21 125788888888888762 223 478888888888876 4443 5778888888888874 344
Q ss_pred CCCCCCCEEECcCCcCcc--ccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCC--CCCcCcCCCC
Q 002896 487 RNLTNLIRLRLNRNHLTC--NISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG--SLPPEIGDSS 562 (869)
Q Consensus 487 ~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~--~~p~~l~~l~ 562 (869)
.+++|++|++++|.+++ .+|..+. .| +.|.+.+.+|.. +++|++|++++|.+++ .+|.
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------ 416 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------ 416 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC---------------------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccchh------
Confidence 46788888888888877 4454433 22 335566665542 4789999999999987 6664
Q ss_pred CCCEEEccCCcccccCCccccc
Q 002896 563 QLHVIDLSANHIIGKIPSEIGK 584 (869)
Q Consensus 563 ~L~~L~Ls~n~l~~~~p~~l~~ 584 (869)
+++.|.+.+|.+.+.++.+...
T Consensus 417 sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 417 SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp ----------------------
T ss_pred hHhheeCcCcccCCccccCHHH
Confidence 4667788899888776655443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-36 Score=340.38 Aligned_cols=361 Identities=20% Similarity=0.205 Sum_probs=178.4
Q ss_pred CCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCcccc
Q 002896 122 TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGN 201 (869)
Q Consensus 122 ~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 201 (869)
..+..++++++|++|++++|.+.+ +| .++.+++|++|++++|.+++. | ++++++|++|++++|++++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 344455666666666666666664 34 466666666666666666643 2 55666666666666666553 1 555
Q ss_pred ccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccc
Q 002896 202 LTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILE 281 (869)
Q Consensus 202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 281 (869)
+++|++|++++|.+++. | ++.+++|++|++++|++++. + ++.+++|++|++++|...+.+ .+..+++|++|+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 55555666655555542 2 55555555555555555542 1 445555555555555333333 244444444444
Q ss_pred cCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCC
Q 002896 282 LGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSG 361 (869)
Q Consensus 282 L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 361 (869)
+++|++ ++ +| ++.+++|+.|++++|.+++. .++.+++|+.|++++|++++
T Consensus 177 ls~n~l------------------------~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 177 CSFNKI------------------------TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CCSSCC------------------------CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred CCCCcc------------------------ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 444444 43 22 34444455555555544443 24444555555555555554
Q ss_pred CCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccC
Q 002896 362 SIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGN 441 (869)
Q Consensus 362 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 441 (869)
+| +..+++|+.|++++|++++.. +..+++|+.|+++.| +|+.|++++|.+.+.+| ++.
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccc
Confidence 23 445555555555555555432 233445555554433 34455555555554444 344
Q ss_pred CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL 521 (869)
Q Consensus 442 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 521 (869)
+++|+.|++++|...+.+|. ...+|+.|++++| ++|++|++++|.+++. .+..+++|+.|++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l 346 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSC 346 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSCC---CCTTCTTCSEEEC
T ss_pred cccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCccccc---ccccCCcCcEEEC
Confidence 55555555555555444442 2233333333222 3444555555544442 1444445555555
Q ss_pred CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcc
Q 002896 522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSE 581 (869)
Q Consensus 522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 581 (869)
++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..
T Consensus 347 ~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 347 VNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 5554443 12333444444444432 12233444455555555555443
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=349.94 Aligned_cols=326 Identities=20% Similarity=0.221 Sum_probs=250.8
Q ss_pred CCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-CcCCCCCCCEEECc
Q 002896 420 SLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLN 498 (869)
Q Consensus 420 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~ 498 (869)
.++.|++++|++++..+..|.++++|+.|++++|.+++..|..|.++++|++|++++|.+.+..+ .+..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 34444444444444444445555555555555555555555555555555555555555554433 35666777777777
Q ss_pred CCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC
Q 002896 499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 578 (869)
Q Consensus 499 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 578 (869)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 77777777777777888888888888888777778888888888888888888766667888888888888888888877
Q ss_pred CcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccc
Q 002896 579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658 (869)
Q Consensus 579 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 658 (869)
+..+..+++|+.|++++|...+.+|.......+|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 77888888889999988888777777766677899999999999876667889999999999999999988888899999
Q ss_pred ccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcC
Q 002896 659 HLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQG 738 (869)
Q Consensus 659 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~g 738 (869)
+|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++|.|+..|.+.......+.+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~ 352 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR 352 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTT
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCc
Confidence 99999999999999999999999999999999999999888889999999999999999999988655444333344667
Q ss_pred CCCCCCC
Q 002896 739 NEGLCGD 745 (869)
Q Consensus 739 n~~lc~~ 745 (869)
+...|..
T Consensus 353 ~~~~C~~ 359 (477)
T 2id5_A 353 QQPTCAT 359 (477)
T ss_dssp CCCBEEE
T ss_pred cCceeCC
Confidence 7777754
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.7e-36 Score=338.29 Aligned_cols=151 Identities=20% Similarity=0.212 Sum_probs=71.7
Q ss_pred CCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCC
Q 002896 171 IPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNL 250 (869)
Q Consensus 171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 250 (869)
.+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++.+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 334455555555555555555543 2 455555555555555555542 2 44555555555555555442 2 4445
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEec
Q 002896 251 TNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLEL 330 (869)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L 330 (869)
++|++|++++|++++. | ++.+++|++|++++|++++. + ++.+++|++|++++|...+.+ .++.+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 5555555555555432 2 44445555555555544432 1 344444444444444333332 2334444444444
Q ss_pred cCCcccc
Q 002896 331 ADNELSS 337 (869)
Q Consensus 331 s~n~l~~ 337 (869)
++|.+++
T Consensus 178 s~n~l~~ 184 (457)
T 3bz5_A 178 SFNKITE 184 (457)
T ss_dssp CSSCCCC
T ss_pred CCCccce
Confidence 4444443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-35 Score=336.07 Aligned_cols=346 Identities=26% Similarity=0.387 Sum_probs=236.9
Q ss_pred CCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEE
Q 002896 321 NLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 400 (869)
Q Consensus 321 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 400 (869)
.+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35667777777777664 23 35666777777777777765433 6677777777777777765443 6666777777
Q ss_pred EccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCc
Q 002896 401 YLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ 480 (869)
Q Consensus 401 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 480 (869)
++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|+++ +.+.+.. .+.++++|++|++++|.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~-- 188 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK-- 188 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC--
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc--
Confidence 777776664322 666666666666666665432 35556666666654 2332221 14444455555555444
Q ss_pred CCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCC
Q 002896 481 GSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGD 560 (869)
Q Consensus 481 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 560 (869)
++.. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..
T Consensus 189 ---------------------l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 241 (466)
T 1o6v_A 189 ---------------------VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS 241 (466)
T ss_dssp ---------------------CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred ---------------------CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhc
Confidence 4332 124555566666666666655443 45566666666666666543 34666
Q ss_pred CCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeee
Q 002896 561 SSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 640 (869)
Q Consensus 561 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 640 (869)
+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 7777777777777765543 6777778888888887776554 6678888888888888887544 77888899999
Q ss_pred CcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccc
Q 002896 641 LSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 641 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 720 (869)
+++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99998888766 77888999999999988776 468889999999999999998877 7888999999999999987
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-35 Score=336.13 Aligned_cols=345 Identities=33% Similarity=0.470 Sum_probs=193.3
Q ss_pred CCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceee
Q 002896 106 ISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELA 185 (869)
Q Consensus 106 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 185 (869)
+++++.|+++++.+.. +| .+..+++|++|++++|.+.+. |. ++++++|++|++++|.+++..+ ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 3455555565555542 33 255555666666666655533 22 5556666666666665554332 55566666666
Q ss_pred ccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC
Q 002896 186 LTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265 (869)
Q Consensus 186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (869)
+++|.+++..+ +.++++|++|++++|.+.+. + .++.+++|++|+++ +.+.+.. .+.++++|++|++++|.+++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence 66665554322 55566666666666655532 2 35556666666664 3333222 25556666666666666553
Q ss_pred CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcC
Q 002896 266 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN 345 (869)
Q Consensus 266 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 345 (869)
. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 2 235555666666666666554433 44566666666666665532 235556666666666666655443 555
Q ss_pred ccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccc
Q 002896 346 LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ 425 (869)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 425 (869)
+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+.+..| +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 5666666666666654332 5556666666666666654333 5556666666666666655433 45566666666
Q ss_pred cCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcC
Q 002896 426 LGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQG 481 (869)
Q Consensus 426 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 481 (869)
+++|++++. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 666666554 345566666666666666665554 5556666666666666554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=334.06 Aligned_cols=311 Identities=24% Similarity=0.210 Sum_probs=283.5
Q ss_pred cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896 98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG 177 (869)
Q Consensus 98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (869)
.+|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|++
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 3455443 58999999999999888899999999999999999999888999999999999999999999766667899
Q ss_pred CCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEE
Q 002896 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLY 257 (869)
Q Consensus 178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 257 (869)
+++|++|++++|++.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 99999999999999999999999999999999999999988888999999999999999999987777899999999999
Q ss_pred ccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCcccc
Q 002896 258 LRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSS 337 (869)
Q Consensus 258 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 337 (869)
+++|.+.+..+..+..+++|+.|++++|...+.+|.......+|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 99999998888889999999999999999888888877777899999999999986554678899999999999999998
Q ss_pred ccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccc
Q 002896 338 SIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGS 410 (869)
Q Consensus 338 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 410 (869)
..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 8888899999999999999999998888999999999999999999987777888999999999999988754
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-34 Score=318.81 Aligned_cols=312 Identities=21% Similarity=0.189 Sum_probs=201.6
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183 (869)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (869)
..++++++|++++|.++...+..+..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34678889999888887544445678888888999888888777778888888888888888888777777888888888
Q ss_pred eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263 (869)
Q Consensus 184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (869)
|++++|.++...+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888888865555567788888888888888777777777788888888888877654 244566777777777766
Q ss_pred CCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCC
Q 002896 264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYL 343 (869)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l 343 (869)
++. ...++|+.|++++|.+... |.. ..++|++|++++|.+++. .++..+++|+.|++++|.+++..|..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 532 2234566666666666533 221 234555555555555532 344555555555555555554444444
Q ss_pred cCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCc
Q 002896 344 GNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFE 423 (869)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 423 (869)
.. +++|++|++++|++++ +|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 269 ~~------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 269 VK------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322 (390)
T ss_dssp TT------------------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred cc------------------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence 44 4445555555554443 2333344555555555555554 33444555566666
Q ss_pred cccCCCcCcccccccccCCCCCCeEEccCCCCcc
Q 002896 424 LQLGDNKLSNSISHSLGNLTHMTLLALYDNALSG 457 (869)
Q Consensus 424 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 457 (869)
|++++|.++... +..+++|+.|++++|.+..
T Consensus 323 L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 323 LYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 666666655431 4555666666666666654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.7e-34 Score=331.69 Aligned_cols=332 Identities=22% Similarity=0.218 Sum_probs=247.3
Q ss_pred CcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEec
Q 002896 395 TNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTL 474 (869)
Q Consensus 395 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 474 (869)
++++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..|..|.++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45555666666555444444566666666666666666665556666666666666666666666666666666666666
Q ss_pred CCCcCcCCCCC-cCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCC
Q 002896 475 SDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGS 553 (869)
Q Consensus 475 s~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ 553 (869)
++|.+.+..+. +..+++|++|++++|.+++..+..|..+++|++|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-
Confidence 66666655443 466777777777777777777777777777777777777776542 4556777888888777654
Q ss_pred CCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCC
Q 002896 554 LPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNL 633 (869)
Q Consensus 554 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 633 (869)
+...++|+.|++++|.+....+.. .++|+.|++++|.+.+ +..+..+++|++|+|++|.+++..|..|..+
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 234457888888888876443322 3678888888888876 3667888999999999999999889999999
Q ss_pred CCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEc
Q 002896 634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDI 713 (869)
Q Consensus 634 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 713 (869)
++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.. +..+++|+.|++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 999999999999877 5667788899999999999996 57777889999999999999998864 566789999999
Q ss_pred cCCcccccCCCCccccccchhhhcCCCCCCCC
Q 002896 714 SYNELHGPIPNSTAFSDALMEALQGNEGLCGD 745 (869)
Q Consensus 714 s~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~ 745 (869)
++|+++|.++. ..+..+....+.+++..|+.
T Consensus 353 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 353 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred eCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 99999998753 34566666778899999976
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=312.93 Aligned_cols=333 Identities=22% Similarity=0.231 Sum_probs=245.2
Q ss_pred CCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEe
Q 002896 394 LTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLT 473 (869)
Q Consensus 394 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 473 (869)
+++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34556666666665543334456666666666666666665555666666666666666666666666666677777777
Q ss_pred cCCCcCcCCCCC-cCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCC
Q 002896 474 LSDNQLQGSIPN-LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIG 552 (869)
Q Consensus 474 Ls~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 552 (869)
+++|.+....+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 777766654443 46677777777777777777777777777778888877777654 24556778888888877653
Q ss_pred CCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccC
Q 002896 553 SLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGN 632 (869)
Q Consensus 553 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 632 (869)
+...++|++|++++|.+... |. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+++..|..|..
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 23345788888888888754 22 2347888999999988764 56778899999999999999888999999
Q ss_pred CCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEE
Q 002896 633 LVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYID 712 (869)
Q Consensus 633 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 712 (869)
+++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++.. +..+++|++|+
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~ 345 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT 345 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEE
Confidence 9999999999999876 5666778899999999999996 56667888999999999999998863 66778999999
Q ss_pred ccCCcccccCCCCccccccchhhhcCCCCCCCC
Q 002896 713 ISYNELHGPIPNSTAFSDALMEALQGNEGLCGD 745 (869)
Q Consensus 713 ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~ 745 (869)
+++|+++|.+.. ..+..+....+.+++..|..
T Consensus 346 l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 346 LSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred cCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 999999997643 23445555566777777754
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.5e-34 Score=331.77 Aligned_cols=312 Identities=21% Similarity=0.191 Sum_probs=210.3
Q ss_pred CCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCcee
Q 002896 105 NISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL 184 (869)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 184 (869)
.+++++.|++++|.+....+..+..+++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788888888888875555567788888888888888887777788888888888888888887777777888888888
Q ss_pred eccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCC
Q 002896 185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFS 264 (869)
Q Consensus 185 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 264 (869)
++++|.+++..+..|+++++|++|++++|.+++..|..++.+++|++|++++|.+++.. ++.+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888887666666677777888888777777777777777777777777777776542 344566667777666655
Q ss_pred CCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCc
Q 002896 265 SSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLG 344 (869)
Q Consensus 265 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 344 (869)
+. ...++|+.|++++|.+....+ .+ .+ +|+.|++++|.+++. ..+.
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~------------------------~L~~L~L~~n~l~~~--~~l~ 251 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRG-PV--NV------------------------ELTILKLQHNNLTDT--AWLL 251 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEEC-SC--CS------------------------CCCEEECCSSCCCCC--GGGG
T ss_pred cc-----cCCchhheeeccCCccccccc-cc--CC------------------------CCCEEECCCCCCCCC--hhhc
Confidence 31 223345555555555542221 11 13 445555555554432 3445
Q ss_pred CccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCcc
Q 002896 345 NLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFEL 424 (869)
Q Consensus 345 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 424 (869)
.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 55555555555555555555556666666666666666654 3445555667777777777766 456666777777777
Q ss_pred ccCCCcCcccccccccCCCCCCeEEccCCCCccc
Q 002896 425 QLGDNKLSNSISHSLGNLTHMTLLALYDNALSGV 458 (869)
Q Consensus 425 ~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 458 (869)
++++|.+.+.. +..+++|+.|++++|.+.+.
T Consensus 330 ~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 330 YLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 77777776542 56677888888888887754
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-32 Score=297.26 Aligned_cols=307 Identities=27% Similarity=0.409 Sum_probs=216.0
Q ss_pred cCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCC
Q 002896 367 IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMT 446 (869)
Q Consensus 367 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 446 (869)
+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 44678888888888888743 3 47778888888888888775433 77778888888888877663 3467777777
Q ss_pred eEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcc
Q 002896 447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNF 526 (869)
Q Consensus 447 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l 526 (869)
+|++++|.+.+..+ +..+++|++|++++|......+.+..+++|++|++++|.+....+
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------------- 172 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------------------- 172 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-------------------
Confidence 77777777765433 666667777777766555544455555555555555555443322
Q ss_pred cccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccc
Q 002896 527 YGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSEL 606 (869)
Q Consensus 527 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 606 (869)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 173 -------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp -------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred -------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 3444555555555555543222 5556666666666666654433 5666777777777777665544 6
Q ss_pred cCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcE
Q 002896 607 GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEM 686 (869)
Q Consensus 607 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 686 (869)
..+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++..|..++.+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 6778888888888887754 4678888899999999988775 45788899999999999998888898999999999
Q ss_pred EeCCCCCCCCCcchhhhcCCCCcEEEccCCccc
Q 002896 687 LNLSHNNLSDFIPRCFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 687 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 719 (869)
|++++|++++..| +..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999998777 788899999999999875
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.1e-34 Score=310.11 Aligned_cols=283 Identities=22% Similarity=0.297 Sum_probs=181.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcE
Q 002896 32 SDSTEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKY 111 (869)
Q Consensus 32 ~~~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~ 111 (869)
.+..+|++||++||+++..++ .+.+.+|........++|.|.|+.|+... ..++ -...+++++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~-~~~~~~w~~~~~~~~~~~~~~g~~~~~~~--------------~~l~--~~~~~~l~~ 85 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADR-NRWHSAWRQANSNNPQIETRTGRALKATA--------------DLLE--DATQPGRVA 85 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCC-TTHHHHHHHHTTTCTTSCCSHHHHHHHHH--------------HHHH--HHTSTTCCE
T ss_pred ccCchHHHHHHHHHHhccCCc-hhhhhhhcccccccccccccCCcchhhhH--------------HHHh--cccccceeE
Confidence 355789999999999886545 45567883111246789999999995210 0000 001234444
Q ss_pred EeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCccc
Q 002896 112 LDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFL 191 (869)
Q Consensus 112 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 191 (869)
|+|++|.++ .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|++
T Consensus 86 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred EEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 455444444 44444444555555555555544 44545555555555555555554 4454555555555555555555
Q ss_pred CCCCCCccc---------cccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896 192 KGSIPPSLG---------NLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262 (869)
Q Consensus 192 ~~~~~~~l~---------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (869)
.+.+|..+. ++++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..++.+++|++|++++|.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence 444544443 3777777777777777 666677777777777777777774 45567777777777777777
Q ss_pred CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccc
Q 002896 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS 336 (869)
Q Consensus 263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 336 (869)
+.+.+|..+..+++|++|++++|++.+.+|..+.++++|++|++++|.+.+.+|.+++++++|+.+++..+.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777777777777777777777777778888888887777777877778888887777765544
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.1e-34 Score=303.31 Aligned_cols=259 Identities=25% Similarity=0.428 Sum_probs=233.1
Q ss_pred CCCCEEECcCCcCcc--ccCccccCCCCCCEEeCCC-CcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCE
Q 002896 490 TNLIRLRLNRNHLTC--NISESFGIHPKLTFIDLSH-NNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHV 566 (869)
Q Consensus 490 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 566 (869)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 457777777777777 7778888888888888884 8888888888888999999999999998888888999999999
Q ss_pred EEccCCcccccCCcccccCcccceeeccCccccccCcccccCCc-cccccccccccccccccccccCCCCCCeeeCcCCc
Q 002896 567 IDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI-QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 645 (869)
Q Consensus 567 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 645 (869)
|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999988999999999999999999999989999998988 999999999999999999999987 9999999999
Q ss_pred CCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 646 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
+++.+|..+..+++|++|+|++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999888777 888999999999999999999999999999999999999999999998
Q ss_pred ccccccchhhhcCCCCCCCCCCCCCCC
Q 002896 726 TAFSDALMEALQGNEGLCGDIKGFQSC 752 (869)
Q Consensus 726 ~~~~~~~~~~~~gn~~lc~~~~~~~~C 752 (869)
..+.....-.+.+|+.+||. |. ..|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~-p~-~~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS-PL-PAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST-TS-SCC
T ss_pred ccccccChHHhcCCCCccCC-CC-CCC
Confidence 77887777789999999997 32 357
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.8e-32 Score=296.25 Aligned_cols=307 Identities=25% Similarity=0.363 Sum_probs=234.8
Q ss_pred CcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCC
Q 002896 343 LGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLF 422 (869)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 422 (869)
+..+++|+.|+++++.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 45678999999999999754 3 48889999999999999986544 89999999999999999853 4699999999
Q ss_pred ccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcC
Q 002896 423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHL 502 (869)
Q Consensus 423 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l 502 (869)
+|++++|.+.+..+ +..+++|+.|++++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 99999999987654 88999999999999976655544 8999999999999999886554 78889999999999988
Q ss_pred ccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCccc
Q 002896 503 TCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEI 582 (869)
Q Consensus 503 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 582 (869)
.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~------- 256 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS------- 256 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-------
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC-------
Confidence 76544 6667777777777777665433 5555666666666665554322 444555555555555444
Q ss_pred ccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccc
Q 002896 583 GKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE 662 (869)
Q Consensus 583 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 662 (869)
+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..|..+..+++|++
T Consensus 257 -----------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 257 -----------------DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp -----------------CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred -----------------CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 32 2344666677777777776654 35777888888888888888888888888888888
Q ss_pred ccccccccCCchhhhhcCCCCCcEEeCCCCCCC
Q 002896 663 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695 (869)
Q Consensus 663 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 695 (869)
|++++|++++..| +..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888877776 778888888888888875
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=282.34 Aligned_cols=288 Identities=22% Similarity=0.299 Sum_probs=138.6
Q ss_pred CCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeecc
Q 002896 108 KLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALT 187 (869)
Q Consensus 108 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 187 (869)
++++++++++.++ .+|..+. ++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3555555555554 3444432 455555555555554445555555555555555555555445555555555555555
Q ss_pred CcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCC--CcccccCCCCCCCEEEccCCCCCC
Q 002896 188 SNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCG--SIPLFLGNLTNLDTLYLRNNSFSS 265 (869)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 265 (869)
+|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 55554 2222222 344444444444443333334444444444444444431 233333333 44444444444332
Q ss_pred CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcC
Q 002896 266 SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGN 345 (869)
Q Consensus 266 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 345 (869)
+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 187 -l~~~~~--------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 187 -IPKDLP--------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp -CCSSSC--------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred -cCcccc--------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 222221 33444444444444333334444444444444444444444444444
Q ss_pred ccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCC------CCcccEEEccCCccc--cccChhhhC
Q 002896 346 LTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN------LTNLAILYLHSNTLL--GSIPREIGN 417 (869)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~~~~ 417 (869)
+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++. +..|..+..
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 444444444444444 34444445555555555555555444444432 245667777777665 445566777
Q ss_pred CCCCCccccCCCc
Q 002896 418 LKSLFELQLGDNK 430 (869)
Q Consensus 418 l~~L~~L~Ls~n~ 430 (869)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7777777777664
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-30 Score=280.14 Aligned_cols=289 Identities=23% Similarity=0.322 Sum_probs=205.8
Q ss_pred CcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeec
Q 002896 131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210 (869)
Q Consensus 131 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 210 (869)
.+|++++++++.+. .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 36777777777766 5565543 46666777766666555556666666666666666665555555555555555555
Q ss_pred cccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCC--
Q 002896 211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN-- 288 (869)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~-- 288 (869)
++|.++ .+|..+. ++|+ +|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~------------------------~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLV------------------------ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCC------------------------EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred CCCcCC-ccCcccc--ccCC------------------------EEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence 555554 2333222 4444 4455444444333333445555555555555553
Q ss_pred cccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccC
Q 002896 289 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIG 368 (869)
Q Consensus 289 ~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 368 (869)
+..+..+..+ +|++|++++|.+++ +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 2445555555 67777777777764 454443 7899999999999998889999999999999999999998888899
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhC------CCCCCccccCCCcCc--cccccccc
Q 002896 369 NLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGN------LKSLFELQLGDNKLS--NSISHSLG 440 (869)
Q Consensus 369 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~~~~l~ 440 (869)
.+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+.. ...|+.|++++|.+. +..+..+.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 9999999999999998 78888999999999999999999776666654 367999999999987 67788899
Q ss_pred CCCCCCeEEccCCC
Q 002896 441 NLTHMTLLALYDNA 454 (869)
Q Consensus 441 ~l~~L~~L~l~~n~ 454 (869)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 99999999999875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5e-30 Score=277.20 Aligned_cols=225 Identities=27% Similarity=0.343 Sum_probs=111.2
Q ss_pred CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeec
Q 002896 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELAL 186 (869)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (869)
+.+++|+|++|.+++..+..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 46777777777777655666777777777777777777666667777777777777777665 3443332 45555555
Q ss_pred cCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCC
Q 002896 187 TSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSS 266 (869)
Q Consensus 187 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 266 (869)
++|.+++..+..+.++++|++|++++|.+.. .+..+..+..+++|++|++++|.++.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcChhhccCCCCcCEEECCCCcccc-
Confidence 5555544444444444444444444444431 01233334444444444444444432
Q ss_pred CCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCc
Q 002896 267 IPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNL 346 (869)
Q Consensus 267 ~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 346 (869)
+|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 222221 34444444444444333444444444444444444444333333444444444444444433 223333333
Q ss_pred cccceeeccCCcCC
Q 002896 347 TNLAAFYLYKNSLS 360 (869)
Q Consensus 347 ~~L~~L~L~~n~l~ 360 (869)
++|++|++++|.++
T Consensus 263 ~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 263 KYIQVVYLHNNNIS 276 (330)
T ss_dssp SSCCEEECCSSCCC
T ss_pred CCcCEEECCCCcCC
Confidence 33333333333333
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.1e-30 Score=276.51 Aligned_cols=267 Identities=22% Similarity=0.285 Sum_probs=185.6
Q ss_pred CCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEcc
Q 002896 156 YIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALG 235 (869)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 235 (869)
+|++|++++|.+++..+..|+++++|++|++++|.+++..|..++++++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4445555555554444444555555555555555555555555555566666666666655 3444333 688889999
Q ss_pred CCcCCCCcccccCCCCCCCEEEccCCCCCC--CCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccC
Q 002896 236 NNKLCGSIPLFLGNLTNLDTLYLRNNSFSS--SIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313 (869)
Q Consensus 236 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 313 (869)
+|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++|.+++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 888887777778889999999999998863 667778888999999999998874 555443 788888888888887
Q ss_pred CCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCC
Q 002896 314 SIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGN 393 (869)
Q Consensus 314 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 393 (869)
..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|+.
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 77778888888888888888888877777888888888888888887 66777778888888888888887766666543
Q ss_pred C------CcccEEEccCCcccc--ccChhhhCCCCCCccccCCC
Q 002896 394 L------TNLAILYLHSNTLLG--SIPREIGNLKSLFELQLGDN 429 (869)
Q Consensus 394 l------~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n 429 (869)
. +.++.+++++|++.. ..|..|..+.+++.+++++|
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2 556666666666542 33345555555555555554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.2e-33 Score=318.99 Aligned_cols=376 Identities=20% Similarity=0.129 Sum_probs=202.7
Q ss_pred CCCCeEeccCCccccccCC-CCcCccccceeeccCCcCCC----CCccccCCCCCCCEEEccCCcCCCCCCCCCC-CCC-
Q 002896 323 KSLSGLELADNELSSSIPH-YLGNLTNLAAFYLYKNSLSG----SIPSEIGNLKSLSNLDLSENKLSGSIPHSLG-NLT- 395 (869)
Q Consensus 323 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~- 395 (869)
++|++|++++|.++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3456666666665543222 24455566666666666553 2334445556666666666655432221111 122
Q ss_pred ---cccEEEccCCcccc----ccChhhhCCCCCCccccCCCcCccccccccc-----CCCCCCeEEccCCCCcccC----
Q 002896 396 ---NLAILYLHSNTLLG----SIPREIGNLKSLFELQLGDNKLSNSISHSLG-----NLTHMTLLALYDNALSGVI---- 459 (869)
Q Consensus 396 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~---- 459 (869)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 45555555555542 2344455555555555555555433222211 1334555555555444322
Q ss_pred CccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCcccc-----CCCCCCEEeCCCCccccc----C
Q 002896 460 PEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFG-----IHPKLTFIDLSHNNFYGQ----I 530 (869)
Q Consensus 460 ~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l~~~----~ 530 (869)
+..+.. +++|++|++++|.++......+. ..++|++|++++|.+++. +
T Consensus 163 ~~~l~~-----------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 163 ASVLRA-----------------------KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp HHHHHH-----------------------CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred HHHHhh-----------------------CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 222333 34444444444444332222221 133555555555555442 2
Q ss_pred CcCcCCCCCCcEEEccCCCCCCCC-----CcCcCCCCCCCEEEccCCccccc----CCcccccCcccceeeccCcccccc
Q 002896 531 SSDWGKCPNLGTFDVSVNNIIGSL-----PPEIGDSSQLHVIDLSANHIIGK----IPSEIGKLSSLIKLILRRNQLFGQ 601 (869)
Q Consensus 531 ~~~~~~~~~L~~L~ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 601 (869)
+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 333444555566666555554321 11223456666677776666543 445555667777777777766544
Q ss_pred Cccccc-----CCcccccccccccccccc----ccccccCCCCCCeeeCcCCcCCcccchhhhc-----ccccccccccc
Q 002896 602 LPSELG-----SLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEK-----LIHLSELDLSH 667 (869)
Q Consensus 602 ~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~ 667 (869)
.+..+. ..++|++|++++|.+++. ++..+..+++|+.|+|++|++.+..+..+.. .++|++|+|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 333222 225777777777777654 4555666777888888888776655555543 56788888888
Q ss_pred cccCC----chhhhhcCCCCCcEEeCCCCCCCCCcchhhh-----cCCCCcEEEccCCccccc
Q 002896 668 NFLGK----EIPSQICNMRSLEMLNLSHNNLSDFIPRCFE-----EMNGLLYIDISYNELHGP 721 (869)
Q Consensus 668 N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g~ 721 (869)
|.+++ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+...
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 88765 6777777778888888888877765332222 134577777777766543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.3e-33 Score=314.64 Aligned_cols=355 Identities=21% Similarity=0.220 Sum_probs=245.9
Q ss_pred cccceeeccCCcCCCCCccc-cCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccc
Q 002896 347 TNLAAFYLYKNSLSGSIPSE-IGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQ 425 (869)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 425 (869)
++|++|++++|+++...... +..+++|++|++++|.+++... ..++..+..+++|++|+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~ 62 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence 45666666666655432222 4445555555555555542110 01233344444444444
Q ss_pred cCCCcCcccccccc-cCCC----CCCeEEccCCCCcc----cCCccccCCCCCcEEecCCCcCcCCCC-----C-cCCCC
Q 002896 426 LGDNKLSNSISHSL-GNLT----HMTLLALYDNALSG----VIPEELGNLVKLTMLTLSDNQLQGSIP-----N-LRNLT 490 (869)
Q Consensus 426 Ls~n~l~~~~~~~l-~~l~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~-l~~l~ 490 (869)
+++|.+.+..+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+ . ....+
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 44444443222211 1122 45555555555552 334555556666666666665543211 1 22355
Q ss_pred CCCEEECcCCcCcccc----CccccCCCCCCEEeCCCCcccccCCcCcC-----CCCCCcEEEccCCCCCCC----CCcC
Q 002896 491 NLIRLRLNRNHLTCNI----SESFGIHPKLTFIDLSHNNFYGQISSDWG-----KCPNLGTFDVSVNNIIGS----LPPE 557 (869)
Q Consensus 491 ~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l~~~----~p~~ 557 (869)
+|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 7888888888877643 45566789999999999998765444332 366999999999999874 5677
Q ss_pred cCCCCCCCEEEccCCcccccC-----CcccccCcccceeeccCcccccc----CcccccCCccccccccccccccccccc
Q 002896 558 IGDSSQLHVIDLSANHIIGKI-----PSEIGKLSSLIKLILRRNQLFGQ----LPSELGSLIQLEYLDLSSNRLSNSIPR 628 (869)
Q Consensus 558 l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 628 (869)
+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 788999999999999987542 22233589999999999999875 577777899999999999999765554
Q ss_pred cccC-----CCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCchhhhhcC-----CCCCcEEeCCCCCC
Q 002896 629 SLGN-----LVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKEIPSQICN-----MRSLEMLNLSHNNL 694 (869)
Q Consensus 629 ~~~~-----l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l 694 (869)
.+.. .++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 4433 37999999999999876 5677788899999999999998877666653 78999999999999
Q ss_pred CC----CcchhhhcCCCCcEEEccCCccccc
Q 002896 695 SD----FIPRCFEEMNGLLYIDISYNELHGP 721 (869)
Q Consensus 695 ~~----~~p~~l~~l~~L~~L~ls~N~l~g~ 721 (869)
++ .+|..+..+++|++|++++|++++.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 97 7889999999999999999998753
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.2e-29 Score=266.90 Aligned_cols=284 Identities=22% Similarity=0.263 Sum_probs=227.2
Q ss_pred CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCC--CC
Q 002896 70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG--RI 147 (869)
Q Consensus 70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~--~~ 147 (869)
.|.|++|.|+..+ ++ .+|..+. ++|++|+|++|.++...+..+.++++|++|+|++|.+.. ..
T Consensus 6 ~C~~~~l~c~~~~------------l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 6 SCSGTEIRCNSKG------------LT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EEETTEEECCSSC------------CS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eeCCCEEEcCCCC------------cc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 3899999996432 22 3344333 689999999999985555568999999999999999873 34
Q ss_pred CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCC-CccccccccceeeccccCCCCCCCccccCC
Q 002896 148 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP-PSLGNLTNLAILYLHNNSLSGSIPSEIGNL 226 (869)
Q Consensus 148 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 226 (869)
|..+..+++|++|++++|.++ .+|..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 677778999999999999988 577789999999999999999987765 678899999999999999988888888999
Q ss_pred CCCCEEEccCCcCCC-CcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeee
Q 002896 227 KSLSSLALGNNKLCG-SIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 305 (869)
Q Consensus 227 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 305 (869)
++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 999999999999886 5788888999999999999999888888888999999999999999877777788889999999
Q ss_pred cccccccCCCCCcccCCC-CCCeEeccCCccccccC--CCCcCccccceeeccCCcCCCCCccccCC
Q 002896 306 LYTNSLSGSIPSEIGNLK-SLSGLELADNELSSSIP--HYLGNLTNLAAFYLYKNSLSGSIPSEIGN 369 (869)
Q Consensus 306 L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 369 (869)
+++|.+++..|..+..++ +|+.|++++|.+++..+ .....+...+.+.+..+.+....|..+.+
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 999999888888888874 89999999988876432 11122334444444555555455554443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.1e-29 Score=269.91 Aligned_cols=259 Identities=17% Similarity=0.141 Sum_probs=184.9
Q ss_pred CCcEEecCCCcCcCCCC-CcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEcc
Q 002896 468 KLTMLTLSDNQLQGSIP-NLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546 (869)
Q Consensus 468 ~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls 546 (869)
+|++|++++|.+.+..+ .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555544333 45556666666666666666666666666677777777777665544446667777777777
Q ss_pred CCCCCCCCC-cCcCCCCCCCEEEccCC-cccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccc
Q 002896 547 VNNIIGSLP-PEIGDSSQLHVIDLSAN-HIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN 624 (869)
Q Consensus 547 ~n~l~~~~p-~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 624 (869)
+|++.+..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 777764333 36677777777777777 3555556677778888888888888877777778888888888888888765
Q ss_pred cccccccCCCCCCeeeCcCCcCCcccchhhh---cccccccccccccccCC----chhhhhcCCCCCcEEeCCCCCCCCC
Q 002896 625 SIPRSLGNLVKLHYLNLSTNQFIQEIPIKLE---KLIHLSELDLSHNFLGK----EIPSQICNMRSLEMLNLSHNNLSDF 697 (869)
Q Consensus 625 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ 697 (869)
..+..+..+++|+.|++++|++++..+..+. ....++.++++++.+++ .+|+.+..+++|++|++++|+++..
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 4444455678888888888888776554443 34567777777777765 4788999999999999999999976
Q ss_pred cchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896 698 IPRCFEEMNGLLYIDISYNELHGPIPNST 726 (869)
Q Consensus 698 ~p~~l~~l~~L~~L~ls~N~l~g~~p~~~ 726 (869)
.+..|..+++|++|++++|+++|.||...
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~~~~l~ 321 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCSCPRID 321 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred CHHHHhcCCCCCEEEeeCCCccCcCCCcH
Confidence 55557999999999999999999998443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=274.88 Aligned_cols=281 Identities=22% Similarity=0.247 Sum_probs=177.0
Q ss_pred CCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCC
Q 002896 67 KISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR 146 (869)
Q Consensus 67 ~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 146 (869)
...+|.|.|+ |+. ++.+ ++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+.
T Consensus 26 ~~~~C~~~~~-c~~---------~~~~-l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-CKG---------SSGS-LN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-EEC---------CSTT-CS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-eeC---------CCCC-cc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 4567999987 753 2222 32 4555544 4889999999998876666888889999999999988877
Q ss_pred CCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCC-CccccccccceeeccccC-CCCCCCcccc
Q 002896 147 IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIP-PSLGNLTNLAILYLHNNS-LSGSIPSEIG 224 (869)
Q Consensus 147 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~ 224 (869)
.|..|+++++|++|++++|.+++..+..++++++|++|++++|++++..+ ..+.++++|++|++++|. +.+..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 77788888888888888888885544457888888888888887775443 356667777777777663 4444445555
Q ss_pred CCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCee
Q 002896 225 NLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTL 304 (869)
Q Consensus 225 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 304 (869)
++++|++|++++|.+++..|..+..+++|++|++++|.+... .+..+..+++|++|
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~~~~L~~L 227 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL------------------------LEIFVDVTSSVECL 227 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH------------------------HHHHHHHTTTEEEE
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc------------------------hhhhhhhcccccEE
Confidence 666666666666665555555555555555555555554322 11122234444444
Q ss_pred ecccccccCCCCCcc---cCCCCCCeEeccCCcccc----ccCCCCcCccccceeeccCCcCCCCCccc-cCCCCCCCEE
Q 002896 305 YLYTNSLSGSIPSEI---GNLKSLSGLELADNELSS----SIPHYLGNLTNLAAFYLYKNSLSGSIPSE-IGNLKSLSNL 376 (869)
Q Consensus 305 ~L~~n~~~~~~p~~l---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 376 (869)
++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|+.|++++|+++. +|.. +..+++|++|
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI 306 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence 444444443322221 123445556666555554 244556666777777777777763 4443 4677777777
Q ss_pred EccCCcCCCC
Q 002896 377 DLSENKLSGS 386 (869)
Q Consensus 377 ~Ls~n~l~~~ 386 (869)
++++|.+.+.
T Consensus 307 ~L~~N~~~~~ 316 (353)
T 2z80_A 307 WLHTNPWDCS 316 (353)
T ss_dssp ECCSSCBCCC
T ss_pred EeeCCCccCc
Confidence 7777776654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.9e-31 Score=311.52 Aligned_cols=393 Identities=14% Similarity=0.059 Sum_probs=195.8
Q ss_pred CCCCCCeEeccCCccccccCCCCcC-ccc-cceeeccCCcC-CC-CCccccCCCCCCCEEEccCCcCCCCCC----CCCC
Q 002896 321 NLKSLSGLELADNELSSSIPHYLGN-LTN-LAAFYLYKNSL-SG-SIPSEIGNLKSLSNLDLSENKLSGSIP----HSLG 392 (869)
Q Consensus 321 ~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~-L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~l~ 392 (869)
.+++|++|++++|.+++..+..+.. ++. |++|++++|.- +. .++.....+++|++|++++|.+++... ..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4566666666666655544444433 223 66666666541 10 111112356666666666666554421 2233
Q ss_pred CCCcccEEEccCCccc----cccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCc---ccCCccccC
Q 002896 393 NLTNLAILYLHSNTLL----GSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALS---GVIPEELGN 465 (869)
Q Consensus 393 ~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~ 465 (869)
.+++|++|++++|.+. +.++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++..... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4566666666666665 2333444556666666666666655 3455566666666666543222 222334455
Q ss_pred CCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccC-ccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEE
Q 002896 466 LVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNIS-ESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFD 544 (869)
Q Consensus 466 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 544 (869)
+++|+.++++++........+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 566666666554322222234455566666666665443322 2235556666666652221222222234456666666
Q ss_pred ccC-----------CCCCCC-CCcCcCCCCCCCEEEccCCcccccCCccccc-Ccccceeecc----Ccccccc-----C
Q 002896 545 VSV-----------NNIIGS-LPPEIGDSSQLHVIDLSANHIIGKIPSEIGK-LSSLIKLILR----RNQLFGQ-----L 602 (869)
Q Consensus 545 ls~-----------n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~-----~ 602 (869)
+++ |.+++. ++.....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++. +
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 662 333321 1111233556666666666665554444443 5666666664 3444432 2
Q ss_pred cccccCCcccccccccccc--cccccccccc-CCCCCCeeeCcCCcCCc-ccchhhhcccccccccccccccCCc-hhhh
Q 002896 603 PSELGSLIQLEYLDLSSNR--LSNSIPRSLG-NLVKLHYLNLSTNQFIQ-EIPIKLEKLIHLSELDLSHNFLGKE-IPSQ 677 (869)
Q Consensus 603 ~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~ 677 (869)
+..+.++++|++|++++|. +++..+..+. .+++|+.|+|++|++++ .++..+..+++|++|+|++|.+++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 2224445566666665332 4433333332 25556666666666554 2333345556666666666665443 2333
Q ss_pred hcCCCCCcEEeCCCCCCCCCcchhh-hcCCCCcEEEcc
Q 002896 678 ICNMRSLEMLNLSHNNLSDFIPRCF-EEMNGLLYIDIS 714 (869)
Q Consensus 678 l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls 714 (869)
...+++|++|+|++|++++.....+ ..++.+....+.
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 3455666666666666555432222 233444444333
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-27 Score=269.63 Aligned_cols=234 Identities=22% Similarity=0.217 Sum_probs=205.9
Q ss_pred CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEc
Q 002896 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDL 569 (869)
Q Consensus 490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L 569 (869)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56788888888888887888888888888888888888888888888888888888888888777777888889999999
Q ss_pred cCCcccccCCcccccCcccceeeccCcc-ccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCc
Q 002896 570 SANHIIGKIPSEIGKLSSLIKLILRRNQ-LFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQ 648 (869)
Q Consensus 570 s~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 648 (869)
++|++.+..+..+.++++|+.|++++|. +....+..|..+++|++|++++|++++. | .+..+++|+.|+|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 9998887777778889999999999854 4444455688999999999999999864 4 58899999999999999999
Q ss_pred ccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 649 EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 649 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|...
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999754
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.7e-28 Score=260.56 Aligned_cols=234 Identities=22% Similarity=0.253 Sum_probs=184.1
Q ss_pred CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCccccc--CCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEE
Q 002896 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQ--ISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI 567 (869)
Q Consensus 490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 567 (869)
++|++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 4555566666655554444556666666666666666532 23444456677777777776653 45556777788888
Q ss_pred EccCCcccccCC-cccccCcccceeeccCccccccCcccccCCccccccccccccccc-cccccccCCCCCCeeeCcCCc
Q 002896 568 DLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSN-SIPRSLGNLVKLHYLNLSTNQ 645 (869)
Q Consensus 568 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~ 645 (869)
++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 888887776544 467778888888888888888888888888889999999998887 678889999999999999999
Q ss_pred CCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCC-CCcEEEccCCcccccCCC
Q 002896 646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN-GLLYIDISYNELHGPIPN 724 (869)
Q Consensus 646 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~~p~ 724 (869)
+++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|+++|.|+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9888888899999999999999999888888899999999999999999999999998884 999999999999998764
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.4e-28 Score=260.69 Aligned_cols=226 Identities=24% Similarity=0.303 Sum_probs=178.1
Q ss_pred CCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceee
Q 002896 130 LSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILY 209 (869)
Q Consensus 130 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 209 (869)
..++++|+|++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888877 67777777888888888888887 77777888888888888888877 6677788888888888
Q ss_pred ccccCCCCCCCccccC---------CCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCcc
Q 002896 210 LHNNSLSGSIPSEIGN---------LKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSIL 280 (869)
Q Consensus 210 L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 280 (869)
+++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 8887777777776654 778888888888877 677777888888888888888874 55567778888888
Q ss_pred ccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCC
Q 002896 281 ELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLS 360 (869)
Q Consensus 281 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 360 (869)
++++|++.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888887788888888888888888888887788877888888888888888888888888888888888877766544
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=267.34 Aligned_cols=252 Identities=23% Similarity=0.222 Sum_probs=211.0
Q ss_pred cEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCC
Q 002896 470 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549 (869)
Q Consensus 470 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~ 549 (869)
..++.++..+......+ .++++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 46 ~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 34444444444322222 2567778888888877777788888888888888888887777788888888888888888
Q ss_pred CCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccc-cccCcccccCCccccccccccccccccccc
Q 002896 550 IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQL-FGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628 (869)
Q Consensus 550 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 628 (869)
+++..+..+..+++|++|++++|++.+..+..+.++++|+.|++++|.. ....+..|.++++|++|++++|.++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence 8877667788888899999999888877777788889999999988544 44445578899999999999999984 45
Q ss_pred cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCC
Q 002896 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 708 (869)
Q Consensus 629 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 708 (869)
.+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCcccccCCCC
Q 002896 709 LYIDISYNELHGPIPNS 725 (869)
Q Consensus 709 ~~L~ls~N~l~g~~p~~ 725 (869)
+.|++++|++.|.|...
T Consensus 282 ~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 282 ERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp CEEECCSSCEECSSTTH
T ss_pred CEEEcCCCCccCCCCch
Confidence 99999999999998744
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=252.51 Aligned_cols=213 Identities=23% Similarity=0.207 Sum_probs=159.9
Q ss_pred CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCc-ccccCCcccccCcccceee
Q 002896 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANH-IIGKIPSEIGKLSSLIKLI 592 (869)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ 592 (869)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. +.+..|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 456666666666665555556666666666666666666556666666677777777765 5555466666777777777
Q ss_pred ccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCC
Q 002896 593 LRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGK 672 (869)
Q Consensus 593 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 672 (869)
+++|.+.+..|..+..+++|++|++++|++++..+..|+.+++|+.|+|++|++++..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 77777777667777777788888888888877666677888888888888888877666678888888888888888888
Q ss_pred chhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCc
Q 002896 673 EIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNST 726 (869)
Q Consensus 673 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~ 726 (869)
..|..|..+++|+.|++++|++++..+..+..+++|++|++++|+++|.|+..+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~ 245 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence 888888888888888888888888877888888888888888888888877543
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.8e-30 Score=302.00 Aligned_cols=375 Identities=13% Similarity=0.068 Sum_probs=289.4
Q ss_pred CccccceeeccCCcCCCCCccccCC-CCC-CCEEEccCCc-CCC-CCCCCCCCCCcccEEEccCCccccc----cChhhh
Q 002896 345 NLTNLAAFYLYKNSLSGSIPSEIGN-LKS-LSNLDLSENK-LSG-SIPHSLGNLTNLAILYLHSNTLLGS----IPREIG 416 (869)
Q Consensus 345 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~ 416 (869)
.+++|++|++++|.+++..+..+.. ++. |++|++++|. ++. .++.....+++|++|++++|.+.+. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6789999999999888766666655 444 9999999986 221 1122234689999999999998765 444567
Q ss_pred CCCCCCccccCCCcCc----ccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCc----CCCCCcCC
Q 002896 417 NLKSLFELQLGDNKLS----NSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQ----GSIPNLRN 488 (869)
Q Consensus 417 ~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~l~~ 488 (869)
.+++|++|++++|.++ +.++..+.++++|+.|++++|.+.+ ++..+..+++|++|+++.+... .....+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 8899999999999997 3445556789999999999999887 5678899999999999864332 11226778
Q ss_pred CCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEE
Q 002896 489 LTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVI 567 (869)
Q Consensus 489 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 567 (869)
+++|+.++++++. ...++..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 8999999998863 34566677888999999999999765443 346789999999999432222334444678899999
Q ss_pred EccC-----------CcccccC-CcccccCcccceeeccCccccccCcccccC-Cccccccccc----ccccccc-----
Q 002896 568 DLSA-----------NHIIGKI-PSEIGKLSSLIKLILRRNQLFGQLPSELGS-LIQLEYLDLS----SNRLSNS----- 625 (869)
Q Consensus 568 ~Ls~-----------n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~----- 625 (869)
++++ |.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 9993 5665432 222456899999999999998877766655 8899999996 6677763
Q ss_pred ccccccCCCCCCeeeCcCCc--CCcccchhhhc-ccccccccccccccCCc-hhhhhcCCCCCcEEeCCCCCCCCC-cch
Q 002896 626 IPRSLGNLVKLHYLNLSTNQ--FIQEIPIKLEK-LIHLSELDLSHNFLGKE-IPSQICNMRSLEMLNLSHNNLSDF-IPR 700 (869)
Q Consensus 626 ~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~ 700 (869)
++..+.++++|+.|++++|. +++..+..+.. +++|++|+|++|++++. ++..+..+++|++|+|++|++++. ++.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 44457789999999998654 77666666654 89999999999999874 566678899999999999998765 445
Q ss_pred hhhcCCCCcEEEccCCccccc
Q 002896 701 CFEEMNGLLYIDISYNELHGP 721 (869)
Q Consensus 701 ~l~~l~~L~~L~ls~N~l~g~ 721 (869)
....+++|++|++++|+++..
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 557899999999999998764
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.5e-27 Score=247.07 Aligned_cols=253 Identities=22% Similarity=0.164 Sum_probs=205.9
Q ss_pred cEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCC
Q 002896 470 TMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN 549 (869)
Q Consensus 470 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~ 549 (869)
++++.+++.+...... ..++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3445555544433222 24577788888888877777778888888888888888888778888888888888888887
Q ss_pred -CCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccc
Q 002896 550 -IIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPR 628 (869)
Q Consensus 550 -l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 628 (869)
+....|..+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 6666678888888999999999998887788888899999999999999888888888999999999999999977777
Q ss_pred cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCC
Q 002896 629 SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGL 708 (869)
Q Consensus 629 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 708 (869)
.|..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.. .-...+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l 250 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL 250 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH
Confidence 8999999999999999999988999999999999999999999988888999999999999999998754421 111234
Q ss_pred cEEEccCCcccccCCCC
Q 002896 709 LYIDISYNELHGPIPNS 725 (869)
Q Consensus 709 ~~L~ls~N~l~g~~p~~ 725 (869)
+.+..+.|.+.|..|..
T Consensus 251 ~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHCCSEECCCBEEESGG
T ss_pred HhcccccCccccCCchH
Confidence 55567889999988853
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.6e-26 Score=259.26 Aligned_cols=242 Identities=27% Similarity=0.289 Sum_probs=122.1
Q ss_pred cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN 189 (869)
Q Consensus 110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (869)
+.++.++..++ .+|..+. ++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 44555555554 3444333 45566666666655555555566666666666666655555555555566666666666
Q ss_pred ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCc-ccccCCCCCCCEEEccCCCCCCCCC
Q 002896 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSI-PLFLGNLTNLDTLYLRNNSFSSSIP 268 (869)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~ 268 (869)
++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|+..+.+ +..|..+++|++|++++|++++. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 555555555555556666666665555444445555666666666553322222 22355555555555555555432 2
Q ss_pred CCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccc
Q 002896 269 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN 348 (869)
Q Consensus 269 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 348 (869)
.+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 2444445555555555544444444444444444444444444444444444444444444444444333333333333
Q ss_pred cceeeccC
Q 002896 349 LAAFYLYK 356 (869)
Q Consensus 349 L~~L~L~~ 356 (869)
|+.|++++
T Consensus 292 L~~L~L~~ 299 (452)
T 3zyi_A 292 LVELHLHH 299 (452)
T ss_dssp CCEEECCS
T ss_pred CCEEEccC
Confidence 33333333
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.9e-28 Score=262.13 Aligned_cols=251 Identities=24% Similarity=0.261 Sum_probs=151.9
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccC-CCCCCcccC-------CCCCCCEEEcCCCCCCCCCCccc
Q 002896 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQF-SGRIPPQIG-------HLSYIEALHLFKNQLSGPIPHEV 175 (869)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~ 175 (869)
+..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4455677777777777 566655443 77777777777 345665554 67777777777777777666655
Q ss_pred --cCCCcCceeeccCcccCCCCCCccccc-----cccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCC--cccc
Q 002896 176 --GGLSSLNELALTSNFLKGSIPPSLGNL-----TNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGS--IPLF 246 (869)
Q Consensus 176 --~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~ 246 (869)
+++++|++|++++|++++. |..++.+ ++|++|++++|.+.+..|..++.+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6677777777777777666 6656555 6666666666666665556666666666666666665543 1222
Q ss_pred c--CCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCC-CcccCCC
Q 002896 247 L--GNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIP-SEIGNLK 323 (869)
Q Consensus 247 l--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~ 323 (869)
+ +.+++|++|++++|.+++. + ......+..+++|++|++++|.+++..| ..+..++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~-~--------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETP-S--------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCH-H--------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred HHhccCCCCCEEECCCCcCcch-H--------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 2 4455555555555544411 0 1111222345566666666666655443 3344556
Q ss_pred CCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCC
Q 002896 324 SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSG 385 (869)
Q Consensus 324 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 385 (869)
+|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6666666666666 4454444 6667777777776655 44 6666777777777776654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.5e-26 Score=253.67 Aligned_cols=235 Identities=25% Similarity=0.233 Sum_probs=146.3
Q ss_pred cCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccC
Q 002896 98 IIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGG 177 (869)
Q Consensus 98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (869)
.+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.+
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 4555444 67888888888888777778888888888888888887766777888888888888888877655556777
Q ss_pred CCcCceeeccCcccCCCCCCccccccccceeeccccC-CCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 002896 178 LSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNS-LSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTL 256 (869)
Q Consensus 178 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 256 (869)
+++|++|++++|.+++..+..+.++++|++|++++|. +....+..|.++++|++|++++|.++ .+| .+..+++|++|
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEE
Confidence 7777777777777776656666666666666666643 33222334555666666666666555 223 24455555555
Q ss_pred EccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccc
Q 002896 257 YLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELS 336 (869)
Q Consensus 257 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 336 (869)
++++|.+++..|..|.++++|+.|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55555555544555555555555555555555444444555555555555555555444444444455555555554443
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-25 Score=234.39 Aligned_cols=217 Identities=29% Similarity=0.331 Sum_probs=150.7
Q ss_pred CCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCC
Q 002896 68 ISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRI 147 (869)
Q Consensus 68 ~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 147 (869)
.++|.|.|+.|...+.++.+++++.. ++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~-l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKK-LT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSC-CS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCC-CC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 37899999999755556678887776 55 3565554 57888888888888666667888888888888888887555
Q ss_pred CcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCC
Q 002896 148 PPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLK 227 (869)
Q Consensus 148 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 227 (869)
+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55567788888888888887766666667777777777777777766666667777777777777776655555566666
Q ss_pred CCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCC
Q 002896 228 SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 288 (869)
Q Consensus 228 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 288 (869)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6666666666666555555666666666666666666544444555555556665555543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-27 Score=256.43 Aligned_cols=267 Identities=23% Similarity=0.210 Sum_probs=183.5
Q ss_pred CCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCC
Q 002896 421 LFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRN 500 (869)
Q Consensus 421 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n 500 (869)
++..+++.+.+.......+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 3445666666655555555566677777777777777666666666666666666666654332 444444555555444
Q ss_pred cCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCc
Q 002896 501 HLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPS 580 (869)
Q Consensus 501 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 580 (869)
.+++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+.
T Consensus 91 ------------------------~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 91 ------------------------YVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp ------------------------EEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred ------------------------cccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence 444322 124555555555555543322 245677777777777766666
Q ss_pred ccccCcccceeeccCccccccCcccc-cCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccc
Q 002896 581 EIGKLSSLIKLILRRNQLFGQLPSEL-GSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH 659 (869)
Q Consensus 581 ~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 659 (869)
.+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. + ....+++|+.|+|++|++++. |..+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCc
Confidence 77777788888888887777766665 3678888888888888765 3 333578899999999998764 445888899
Q ss_pred cccccccccccCCchhhhhcCCCCCcEEeCCCCCCC-CCcchhhhcCCCCcEEEcc-CCcccccCCC
Q 002896 660 LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS-DFIPRCFEEMNGLLYIDIS-YNELHGPIPN 724 (869)
Q Consensus 660 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~~p~ 724 (869)
|++|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999999999986 56777888899999999999998 7778888888888888888 4456665553
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.4e-27 Score=251.41 Aligned_cols=264 Identities=21% Similarity=0.175 Sum_probs=171.6
Q ss_pred cEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCC
Q 002896 398 AILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDN 477 (869)
Q Consensus 398 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 477 (869)
+..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 334444444443333444455566666666666666555566666666666666666665443 666666666666666
Q ss_pred cCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcC
Q 002896 478 QLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPE 557 (869)
Q Consensus 478 ~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 557 (869)
.+.+. ...++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus 91 ~l~~l----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 91 YVQEL----LVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEE----EECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccccc----cCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 66532 23366777777777776655443 456777777777777766667777777777777777777665555
Q ss_pred c-CCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCC
Q 002896 558 I-GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636 (869)
Q Consensus 558 l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 636 (869)
+ ..+++|++|++++|.+++. + ....+++|++|++++|++.+..+. +..+++|++|++++|+++ .+|..+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 5 3567777777777777654 2 233467777777777777655443 667777777777777777 356667777777
Q ss_pred CeeeCcCCcCC-cccchhhhccccccccccccc-ccCCch
Q 002896 637 HYLNLSTNQFI-QEIPIKLEKLIHLSELDLSHN-FLGKEI 674 (869)
Q Consensus 637 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N-~l~~~~ 674 (869)
+.|++++|++. +.+|..+..++.|+.|++++| .+.+..
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 78888877777 666777777777777777733 344433
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.6e-27 Score=254.94 Aligned_cols=256 Identities=22% Similarity=0.260 Sum_probs=180.9
Q ss_pred CCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCC-CCCCccccCCCcCceeeccCcccCCCCCCcccccccc
Q 002896 127 IGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLS-GPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNL 205 (869)
Q Consensus 127 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 205 (869)
++..++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+.. ....+.++++|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~-----------------~~~~~~~l~~L 97 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILF-----------------GALRVLGISGL 97 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHH-----------------HHHHHHTTSCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHH-----------------HHHHhcCcCCc
Confidence 45556677777777776 555544332 444455554442 223332220 00000045556
Q ss_pred ceeeccccCCCCCCCccc--cCCCCCCEEEccCCcCCCCcccccCCC-----CCCCEEEccCCCCCCCCCCCCCCCccCC
Q 002896 206 AILYLHNNSLSGSIPSEI--GNLKSLSSLALGNNKLCGSIPLFLGNL-----TNLDTLYLRNNSFSSSIPSEIGNLKSLS 278 (869)
Q Consensus 206 ~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 278 (869)
++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++++..|..++++++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 666666666665555554 5666666666666666655 5555544 7788888888888777777788888888
Q ss_pred ccccCcccCCcc--cCccc--cCCCCCCeeecccccccCC--CC-CcccCCCCCCeEeccCCccccccC-CCCcCccccc
Q 002896 279 ILELGENRLNGS--IPLSL--GNLTNLDTLYLYTNSLSGS--IP-SEIGNLKSLSGLELADNELSSSIP-HYLGNLTNLA 350 (869)
Q Consensus 279 ~L~L~~n~~~~~--~p~~l--~~l~~L~~L~L~~n~~~~~--~p-~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~ 350 (869)
+|++++|++.+. .+..+ ..+++|++|++++|.+++. ++ ..+..+++|+.|++++|.+++..| ..+..+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 888888887654 23344 7889999999999998732 22 334678999999999999998775 5667789999
Q ss_pred eeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcccc
Q 002896 351 AFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLG 409 (869)
Q Consensus 351 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 409 (869)
+|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999 7777776 8999999999999976 65 8999999999999999875
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=262.91 Aligned_cols=245 Identities=24% Similarity=0.222 Sum_probs=155.1
Q ss_pred CCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeC
Q 002896 442 LTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDL 521 (869)
Q Consensus 442 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 521 (869)
+++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------------------l~~l~~L~~L~L 87 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-------------------------LESLSTLRTLDL 87 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-------------------------CTTCTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-------------------------cccCCCCCEEEe
Confidence 3456666666666666555555555555555555555543332 444445555555
Q ss_pred CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCcccccc
Q 002896 522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ 601 (869)
Q Consensus 522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 601 (869)
++|.+++..+ .++|++|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+.
T Consensus 88 s~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 88 NNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred cCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 5555443221 24556666666655544332 235677777777777766666677777777777777777776
Q ss_pred Cccccc-CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcC
Q 002896 602 LPSELG-SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICN 680 (869)
Q Consensus 602 ~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 680 (869)
.|..+. .+++|++|+|++|.+++.. ....+++|+.|+|++|++++.+| .+..+++|+.|+|++|.+++ +|..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~ 235 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF 235 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred ChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhcc
Confidence 666664 5777777777777777652 23357777888888887776444 47777777777777777764 5666777
Q ss_pred CCCCcEEeCCCCCCC-CCcchhhhcCCCCcEEEcc-------CCcccccCC
Q 002896 681 MRSLEMLNLSHNNLS-DFIPRCFEEMNGLLYIDIS-------YNELHGPIP 723 (869)
Q Consensus 681 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-------~N~l~g~~p 723 (869)
+++|+.|++++|++. +.+|..+..++.|+.++++ .|+..|.+|
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 777777777777777 5566667777777777665 555555544
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=251.83 Aligned_cols=268 Identities=25% Similarity=0.287 Sum_probs=153.0
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEc
Q 002896 371 KSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLAL 450 (869)
Q Consensus 371 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 450 (869)
.+++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|++++. |. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 35888999999888 5666554 68888888888887 4444 457788888888877653 32 5567777777
Q ss_pred cCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccC
Q 002896 451 YDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 530 (869)
Q Consensus 451 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 530 (869)
++|.+++..+ .+++|+.|++++|++.+... .+++|++|++++|.+++..
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~------------------------ 157 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLP------------------------ 157 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC------------------------
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCcC------------------------
Confidence 7777665322 34566666666666554222 1245555555555544321
Q ss_pred CcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCc
Q 002896 531 SSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLI 610 (869)
Q Consensus 531 ~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 610 (869)
. .+++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|. ..++|+.|++++|.+... |. .++
T Consensus 158 -~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~---~~~ 221 (622)
T 3g06_A 158 -A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA---LPS 221 (622)
T ss_dssp -C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC---CCT
T ss_pred -C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC---CCC
Confidence 1 12344444444444443 22 223445555555555543 222 124555555555555432 21 235
Q ss_pred cccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCC
Q 002896 611 QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLS 690 (869)
Q Consensus 611 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 690 (869)
+|++|++++|.+++ +| ..+++|+.|+|++|++++ +|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 56666666666654 33 334566666666666653 333 4456666666666665 455666666666666666
Q ss_pred CCCCCCCcchhhhcC
Q 002896 691 HNNLSDFIPRCFEEM 705 (869)
Q Consensus 691 ~N~l~~~~p~~l~~l 705 (869)
+|++++.+|..+..+
T Consensus 293 ~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 293 GNPLSERTLQALREI 307 (622)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhc
Confidence 666666666655543
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.2e-25 Score=231.94 Aligned_cols=214 Identities=25% Similarity=0.237 Sum_probs=178.1
Q ss_pred CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeec
Q 002896 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLIL 593 (869)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 593 (869)
+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777777666667777777777777777777666667777888888888888888777777888888888888
Q ss_pred cCccccccCcccccCCcccccccccccccccc-ccccccCCCCCCeeeCcCCcCCcccchhhhcccccc----ccccccc
Q 002896 594 RRNQLFGQLPSELGSLIQLEYLDLSSNRLSNS-IPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS----ELDLSHN 668 (869)
Q Consensus 594 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N 668 (869)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888877777788889999999999998874 588999999999999999999988888888888887 8999999
Q ss_pred ccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccc
Q 002896 669 FLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728 (869)
Q Consensus 669 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~ 728 (869)
.+++..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|+++|.||....+
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 998776665544 58999999999999988888999999999999999999999866444
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=8.8e-24 Score=244.24 Aligned_cols=269 Identities=24% Similarity=0.274 Sum_probs=192.1
Q ss_pred cccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCcccc
Q 002896 347 TNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQL 426 (869)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 426 (869)
.+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 35899999999998 6777665 899999999999984 554 57899999999999984 555 6789999999
Q ss_pred CCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCcccc
Q 002896 427 GDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNI 506 (869)
Q Consensus 427 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~ 506 (869)
++|.+++... .+++|+.|++++|.+++. |.. +++|++|++++|.+.+... .+++|+.|++++|.++...
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc
Confidence 9999987543 578999999999999874 442 5899999999999986432 3578999999999888643
Q ss_pred CccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCc
Q 002896 507 SESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLS 586 (869)
Q Consensus 507 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 586 (869)
..+++|+.|++++|.+++. |. ..++|+.|++++|.++. +|. .+++|++|++++|++++ +| ..++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred ----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 4467888888888888753 32 24677777777777763 332 23567777777777764 34 3345
Q ss_pred ccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccc
Q 002896 587 SLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLI 658 (869)
Q Consensus 587 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 658 (869)
+|+.|++++|.+.. +|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus 242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 66666666666553 222 3455566666666655 4455555566666666666666555555554443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.3e-24 Score=224.10 Aligned_cols=208 Identities=22% Similarity=0.265 Sum_probs=170.1
Q ss_pred CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeecc
Q 002896 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILR 594 (869)
Q Consensus 515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 594 (869)
..+.++++++.++. +|..+. +++++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34566666666653 333332 467777777777776666677777777778887777775555556778888888888
Q ss_pred CccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCch
Q 002896 595 RNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEI 674 (869)
Q Consensus 595 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 674 (869)
+|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++.+..+..+..+++|++|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88887777777788888999999999998888888899999999999999998877777899999999999999998888
Q ss_pred hhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 675 PSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 675 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.|.|+..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 888999999999999999999988888999999999999999999998744
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.2e-28 Score=287.15 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=74.7
Q ss_pred CCCCCEEEccCCcccccCCcccc-cCcccceeecc--C----cccccc-----CcccccCCccccccccccccccccccc
Q 002896 561 SSQLHVIDLSANHIIGKIPSEIG-KLSSLIKLILR--R----NQLFGQ-----LPSELGSLIQLEYLDLSSNRLSNSIPR 628 (869)
Q Consensus 561 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 628 (869)
+++|++|+++.|.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 45566665555555544333333 35566666665 2 222211 111133455556666654 44443333
Q ss_pred cccC-CCCCCeeeCcCCcCCcccchhh-hcccccccccccccccCCchhh-hhcCCCCCcEEeCCCCCCCCCcchhh-hc
Q 002896 629 SLGN-LVKLHYLNLSTNQFIQEIPIKL-EKLIHLSELDLSHNFLGKEIPS-QICNMRSLEMLNLSHNNLSDFIPRCF-EE 704 (869)
Q Consensus 629 ~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~ 704 (869)
.+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 3333 5556666666666554444333 4455666666666665443333 22335566666666665533322333 33
Q ss_pred CCCCcEEEccCC
Q 002896 705 MNGLLYIDISYN 716 (869)
Q Consensus 705 l~~L~~L~ls~N 716 (869)
++.|+...+..+
T Consensus 530 lp~l~i~~~~~~ 541 (594)
T 2p1m_B 530 MPKLNVEVIDER 541 (594)
T ss_dssp CTTEEEEEECSS
T ss_pred CCCCEEEEecCC
Confidence 455544444433
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-25 Score=255.12 Aligned_cols=237 Identities=22% Similarity=0.201 Sum_probs=168.6
Q ss_pred CCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEE
Q 002896 417 NLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLR 496 (869)
Q Consensus 417 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 496 (869)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEE
Confidence 34489999999999999989999999999999999999998766 899999999999999987543 337788888
Q ss_pred CcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcC-CCCCCCEEEccCCccc
Q 002896 497 LNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIG-DSSQLHVIDLSANHII 575 (869)
Q Consensus 497 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~ 575 (869)
+++|.+++..+.. +++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.++
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 8888877665543 45677777777777777676777777777777777777766666554 5677777777777766
Q ss_pred ccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCC-cccchhh
Q 002896 576 GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFI-QEIPIKL 654 (869)
Q Consensus 576 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l 654 (869)
+..+ ...+++|+.|++++|.+++..|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 5422 23466666666666666654443 5566666666666666663 4555666666666666666665 4555555
Q ss_pred hccccccccccc
Q 002896 655 EKLIHLSELDLS 666 (869)
Q Consensus 655 ~~l~~L~~L~Ls 666 (869)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 555555555554
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=8.5e-28 Score=282.21 Aligned_cols=406 Identities=13% Similarity=0.110 Sum_probs=244.1
Q ss_pred cccCCCCCCeeecccccccCC---CCCc------------ccCCCCCCeEeccCCccccccCCCCc-CccccceeeccCC
Q 002896 294 SLGNLTNLDTLYLYTNSLSGS---IPSE------------IGNLKSLSGLELADNELSSSIPHYLG-NLTNLAAFYLYKN 357 (869)
Q Consensus 294 ~l~~l~~L~~L~L~~n~~~~~---~p~~------------l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n 357 (869)
.+..+++|++|+++++..... .|.. ...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 345678899999988753211 1211 23466777777777776665544443 4677777777776
Q ss_pred -cCCCC-CccccCCCCCCCEEEccCCcCCCCCCCCC----CCCCcccEEEccCCc--ccc-ccChhhhCCCCCCccccCC
Q 002896 358 -SLSGS-IPSEIGNLKSLSNLDLSENKLSGSIPHSL----GNLTNLAILYLHSNT--LLG-SIPREIGNLKSLFELQLGD 428 (869)
Q Consensus 358 -~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~Ls~ 428 (869)
.++.. ++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|. +.. .++..+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33322 23333456777777777777665433332 245567777777665 111 1112223456666666666
Q ss_pred CcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEE-ECcCCcCccccC
Q 002896 429 NKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRL-RLNRNHLTCNIS 507 (869)
Q Consensus 429 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L-~l~~n~l~~~~~ 507 (869)
|...+.++..+..+++|+.|++..+... +..+.+.+..+.+.++++|+.+ .+.+.. ...++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~ 282 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLP 282 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGG
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCc-----------------cchhhHHHHHHHHhcCCCcccccCCcccc-hhhHH
Confidence 6222224455555666666665443210 0011111111123344444444 222111 11222
Q ss_pred ccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcEEEccCCCCCCC-CCcCcCCCCCCCEEEcc---------CCcccc
Q 002896 508 ESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGTFDVSVNNIIGS-LPPEIGDSSQLHVIDLS---------ANHIIG 576 (869)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~Ls---------~n~l~~ 576 (869)
..+..+++|++|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++|+++ .+.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 233345666666666666543221 22345677777777766 3211 11222346777777773 344543
Q ss_pred cCCcccc-cCcccceeeccCccccccCccccc-CCccccccccc--c----ccccc-----cccccccCCCCCCeeeCcC
Q 002896 577 KIPSEIG-KLSSLIKLILRRNQLFGQLPSELG-SLIQLEYLDLS--S----NRLSN-----SIPRSLGNLVKLHYLNLST 643 (869)
Q Consensus 577 ~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~-----~~~~~~~~l~~L~~L~Ls~ 643 (869)
.....+. ++++|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|+.|+|++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 3223333 489999999998988776655554 58999999999 4 45552 2223367889999999988
Q ss_pred CcCCcccchhhhc-ccccccccccccccCCchhhhh-cCCCCCcEEeCCCCCCCCCcch-hhhcCCCCcEEEccCCccc
Q 002896 644 NQFIQEIPIKLEK-LIHLSELDLSHNFLGKEIPSQI-CNMRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 644 N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 719 (869)
.+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 777776677766 8999999999999988777666 6799999999999999765544 4456899999999999884
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.7e-23 Score=219.69 Aligned_cols=209 Identities=26% Similarity=0.220 Sum_probs=150.8
Q ss_pred CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEc
Q 002896 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDL 569 (869)
Q Consensus 490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L 569 (869)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34566666666666555556666666666666666666665556666666777777766666666666666777777777
Q ss_pred cCCcccccCCcccccCcccceeeccCcccccc-CcccccCCccccccccccccccccccccccCCCCCC----eeeCcCC
Q 002896 570 SANHIIGKIPSEIGKLSSLIKLILRRNQLFGQ-LPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLH----YLNLSTN 644 (869)
Q Consensus 570 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N 644 (869)
++|++.+..+..++.+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 77777665555666777777777777777664 477777777888888888887777666777666666 7889999
Q ss_pred cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
++.+..+..+. ..+|++|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 98766555444 3489999999999988877888999999999999999987543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.8e-23 Score=218.81 Aligned_cols=205 Identities=23% Similarity=0.181 Sum_probs=148.4
Q ss_pred CCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCccccee
Q 002896 512 IHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKL 591 (869)
Q Consensus 512 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 591 (869)
.++++++++++++.++. +|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+ .+.+++|+.|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 33444444444444442 22222 1345555555555555555555566666666666666654322 1556667777
Q ss_pred eccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccC
Q 002896 592 ILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLG 671 (869)
Q Consensus 592 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 671 (869)
++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 77777665 44556677888888888888888777788888899999999999988877777888999999999999998
Q ss_pred CchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCC
Q 002896 672 KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 723 (869)
Q Consensus 672 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p 723 (869)
+..+..|..+++|+.|+|++|+++. +|..+..+.+|+.+++++|++.|.|.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCc
Confidence 7777788899999999999999995 56667777899999999999999874
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.6e-23 Score=215.56 Aligned_cols=206 Identities=24% Similarity=0.294 Sum_probs=106.2
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183 (869)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (869)
..+++|+.|++++|.++. + ..++.+++|++|++++|.+.+ + ..++++++|++|++++|.+++..+..++++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345556666666665542 2 235556666666666666553 2 24555566666666666555544444555555555
Q ss_pred eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263 (869)
Q Consensus 184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (869)
|++++|++++..+..++++++|++|++++|.+++..+..++.+++|++|++++|++++..+..++.+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555555444455555555555555555544444445555555555555555544444444555555555555555
Q ss_pred CCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCccc
Q 002896 264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIG 320 (869)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 320 (869)
++..+..+..+++|+.|++++|.+.+. +++|+.++++.|.++|.+|.+++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 544444444445555555554444321 23344444444444444444433
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1e-22 Score=212.90 Aligned_cols=185 Identities=21% Similarity=0.185 Sum_probs=93.8
Q ss_pred cCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCC
Q 002896 486 LRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLH 565 (869)
Q Consensus 486 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 565 (869)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33444444444444444332 2344445555555555555544444455555555555555555544444455555555
Q ss_pred EEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCc
Q 002896 566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 645 (869)
Q Consensus 566 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 645 (869)
+|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 55555555554444444555555555555555554444444555555555555555555555455555555555555555
Q ss_pred CCcccchhhhcccccccccccccccCCchhhhhc
Q 002896 646 FIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQIC 679 (869)
Q Consensus 646 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 679 (869)
+.+. +++|+.|+++.|.++|.+|..++
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 4432 22445555555555555554433
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=9.2e-23 Score=210.60 Aligned_cols=183 Identities=23% Similarity=0.237 Sum_probs=150.9
Q ss_pred CCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccc
Q 002896 539 NLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLS 618 (869)
Q Consensus 539 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 618 (869)
+.++++++++.++ .+|..+. +.++.|++++|++.+..+..+.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666655 3444443 467777777777777777677777888888888888877777778888888888888
Q ss_pred cccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCc
Q 002896 619 SNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI 698 (869)
Q Consensus 619 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 698 (869)
+|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88888877788889999999999999998877777889999999999999998888888999999999999999999988
Q ss_pred chhhhcCCCCcEEEccCCcccccCCC
Q 002896 699 PRCFEEMNGLLYIDISYNELHGPIPN 724 (869)
Q Consensus 699 p~~l~~l~~L~~L~ls~N~l~g~~p~ 724 (869)
+..|..+++|++|++++|+++|.+..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCCccc
Confidence 88999999999999999999998443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.2e-22 Score=206.57 Aligned_cols=191 Identities=25% Similarity=0.270 Sum_probs=130.8
Q ss_pred CCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCC
Q 002896 69 SPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP 148 (869)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p 148 (869)
+||.|.|.+|... .+.+++++.+ +. .+|..+. +.+++|+|++|.+++..+..+.++++|++|+|++|.+.+..|
T Consensus 3 ~Cp~~~gC~C~~~--~~~l~~~~~~-l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEG--KKEVDCQGKS-LD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGG--GTEEECTTCC-CS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCC--CeEEecCCCC-cc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 5889999999532 2346666655 44 4555554 577888888888877777777888888888888888877667
Q ss_pred cccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCC
Q 002896 149 PQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKS 228 (869)
Q Consensus 149 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 228 (869)
..|.++++|++|++++|.+++..+..|+++++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77777777888888777777666666777777777777777777665555666666666666666666555555666666
Q ss_pred CCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCC
Q 002896 229 LSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSS 265 (869)
Q Consensus 229 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (869)
|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666666666665555555666666666666665553
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.7e-24 Score=239.17 Aligned_cols=236 Identities=21% Similarity=0.281 Sum_probs=175.4
Q ss_pred CCCCCCEEECcCCcCccccC----ccccCCCCCCEEeCCCC---cccccCCcCc-------CCCCCCcEEEccCCCCCC-
Q 002896 488 NLTNLIRLRLNRNHLTCNIS----ESFGIHPKLTFIDLSHN---NFYGQISSDW-------GKCPNLGTFDVSVNNIIG- 552 (869)
Q Consensus 488 ~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n---~l~~~~~~~~-------~~~~~L~~L~ls~n~l~~- 552 (869)
.+++|++|++++|.++...+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|++++|.+.+
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 34444455555554443322 22445566666666664 3344444333 577888888888888876
Q ss_pred ---CCCcCcCCCCCCCEEEccCCcccccCCccc----ccC---------cccceeeccCcccc-ccCc---ccccCCccc
Q 002896 553 ---SLPPEIGDSSQLHVIDLSANHIIGKIPSEI----GKL---------SSLIKLILRRNQLF-GQLP---SELGSLIQL 612 (869)
Q Consensus 553 ---~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L 612 (869)
.+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++++|.+. +..+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 356677788889999999988865433333 333 89999999999887 3444 466788899
Q ss_pred cccccccccccc-----cccccccCCCCCCeeeCcCCcCC----cccchhhhcccccccccccccccCCc----hhhhhc
Q 002896 613 EYLDLSSNRLSN-----SIPRSLGNLVKLHYLNLSTNQFI----QEIPIKLEKLIHLSELDLSHNFLGKE----IPSQIC 679 (869)
Q Consensus 613 ~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~ 679 (869)
++|++++|+++. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999999873 44558889999999999999986 67888899999999999999999877 567774
Q ss_pred C--CCCCcEEeCCCCCCCC----Ccchhh-hcCCCCcEEEccCCcccccCC
Q 002896 680 N--MRSLEMLNLSHNNLSD----FIPRCF-EEMNGLLYIDISYNELHGPIP 723 (869)
Q Consensus 680 ~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~~p 723 (869)
. +++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 4 9999999999999998 477777 678999999999999987553
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.6e-22 Score=207.45 Aligned_cols=201 Identities=24% Similarity=0.268 Sum_probs=107.2
Q ss_pred CCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCc
Q 002896 103 IGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLN 182 (869)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 182 (869)
+.++++++.++++++.++ .+|..+. +++++|+|++|.+.+..|..|.++++|++|++++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 556677777777777776 4555443 567777777777776666667777777777777777664322 15556666
Q ss_pred eeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCC
Q 002896 183 ELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNS 262 (869)
Q Consensus 183 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (869)
+|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666555 334444555555555555555554444444455555555555555444433344444444444444444
Q ss_pred CCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccc
Q 002896 263 FSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 310 (869)
Q Consensus 263 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~ 310 (869)
+++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 44333333344444444444444443 233333333334444443333
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=220.75 Aligned_cols=202 Identities=17% Similarity=0.175 Sum_probs=143.8
Q ss_pred CCCCEEeCCCCcccccCCcCc--CCCCCCcEEEccCCCCCCCCC----cCcCCCCCCCEEEccCCcccccCCcccccCcc
Q 002896 514 PKLTFIDLSHNNFYGQISSDW--GKCPNLGTFDVSVNNIIGSLP----PEIGDSSQLHVIDLSANHIIGKIPSEIGKLSS 587 (869)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 587 (869)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666666666655 666667777777777665444 23345667777777777777666667777777
Q ss_pred cceeeccCcccccc---C-cccccCCcccccccccccccccccc--c-cccCCCCCCeeeCcCCcCCcccchhhhcc---
Q 002896 588 LIKLILRRNQLFGQ---L-PSELGSLIQLEYLDLSSNRLSNSIP--R-SLGNLVKLHYLNLSTNQFIQEIPIKLEKL--- 657 (869)
Q Consensus 588 L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--- 657 (869)
|++|++++|++.+. . +..+..+++|++|++++|+++...+ . .++.+++|++|||++|++.+.+|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 77777777776542 1 2234577888888888888863211 1 25677888888888888888877777766
Q ss_pred cccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccc
Q 002896 658 IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 658 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 720 (869)
++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888887 5666654 7899999999999885 32 6777889999999998864
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.2e-25 Score=238.01 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=144.4
Q ss_pred CCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCC--CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCC
Q 002896 69 SPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNI--SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGR 146 (869)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 146 (869)
-|..|.++.|+ ...++.+++++.. +. +..+.++ +++++|++++|.+.+..+. +.++++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~-~~~~~~l~l~~~~-~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASD-ESLWQTLDLTGKN-LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTC-STTSSEEECTTCB-CC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcC-chhheeecccccc-CC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 45679998886 3346778888765 44 3445566 7889999999988876655 56788999999999888765
Q ss_pred -CCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc-ccCCC-CCCccccccccceeecccc-CCCCC-CCc
Q 002896 147 -IPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN-FLKGS-IPPSLGNLTNLAILYLHNN-SLSGS-IPS 221 (869)
Q Consensus 147 -~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~ 221 (869)
+|..+.++++|++|++++|.+++..|..++++++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 7777888888888888888888777777888888888888888 55542 4445666777777777777 66543 344
Q ss_pred cccCCC-CCCEEEccCC--cCC-CCcccccCCCCCCCEEEccCCC-CCCCCCCCCCCCccCCccccCcc
Q 002896 222 EIGNLK-SLSSLALGNN--KLC-GSIPLFLGNLTNLDTLYLRNNS-FSSSIPSEIGNLKSLSILELGEN 285 (869)
Q Consensus 222 ~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 285 (869)
.+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 456666 6777777766 333 3344455556666666666665 44444444455555555555555
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3e-22 Score=205.18 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=148.9
Q ss_pred CCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCC-CCCCCCcCcCCCCCCCEEEccC-CcccccCCcccccCcccceee
Q 002896 515 KLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNN-IIGSLPPEIGDSSQLHVIDLSA-NHIIGKIPSEIGKLSSLIKLI 592 (869)
Q Consensus 515 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 592 (869)
++++|++++|++++..+..|..+++|++|++++|+ +++..+..+..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666677777777777777776 6555555677777788888877 777766666777788888888
Q ss_pred ccCccccccCcccccCCcccc---ccccccc-cccccccccccCCCCCC-eeeCcCCcCCcccchhhhcccccccccccc
Q 002896 593 LRRNQLFGQLPSELGSLIQLE---YLDLSSN-RLSNSIPRSLGNLVKLH-YLNLSTNQFIQEIPIKLEKLIHLSELDLSH 667 (869)
Q Consensus 593 L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 667 (869)
+++|++.+ +|. +..+++|+ +|++++| .+++..+..|.++++|+ .|++++|+++...+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88888776 444 66777777 8888888 88877777788888898 9999998887433333444 7899999999
Q ss_pred cc-cCCchhhhhcCC-CCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCc
Q 002896 668 NF-LGKEIPSQICNM-RSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNE 717 (869)
Q Consensus 668 N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 717 (869)
|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 95 877777888888 8999999999999876554 45678888888763
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6.8e-24 Score=231.86 Aligned_cols=255 Identities=22% Similarity=0.203 Sum_probs=128.4
Q ss_pred eEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCC-----CcCCCC-CCCEEECcCCcCccccCccccCC-----CC
Q 002896 447 LLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIP-----NLRNLT-NLIRLRLNRNHLTCNISESFGIH-----PK 515 (869)
Q Consensus 447 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~ 515 (869)
+..++.|.+++.+|..+....+|++|++++|.+.+..+ .+..++ +|++|++++|.+++..+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777666666667777777777665432 344455 56666666666555544444332 55
Q ss_pred CCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCC-CCCCEEEccCCcccccCCcccc----c-Ccccc
Q 002896 516 LTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDS-SQLHVIDLSANHIIGKIPSEIG----K-LSSLI 589 (869)
Q Consensus 516 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~----~-l~~L~ 589 (869)
|++|++++|.+++..+..+... +..+ ++|++|++++|++++..+..+. . .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 5555555555554433322111 1122 3444444444444433332221 1 13455
Q ss_pred eeeccCccccccCc----ccccCCc-cccccccccccccccccccc----cCC-CCCCeeeCcCCcCCcc----cchhhh
Q 002896 590 KLILRRNQLFGQLP----SELGSLI-QLEYLDLSSNRLSNSIPRSL----GNL-VKLHYLNLSTNQFIQE----IPIKLE 655 (869)
Q Consensus 590 ~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~----~p~~l~ 655 (869)
+|++++|.+.+..+ ..+..++ +|++|+|++|++++..+..+ ..+ ++|+.|||++|++.+. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 55555554443222 2223333 55555555555554443322 222 3566666666655442 333343
Q ss_pred c-ccccccccccccccCCchh----hhhcCCCCCcEEeCCCCCCCCCcc-------hhhhcCCCCcEEEccCCccccc
Q 002896 656 K-LIHLSELDLSHNFLGKEIP----SQICNMRSLEMLNLSHNNLSDFIP-------RCFEEMNGLLYIDISYNELHGP 721 (869)
Q Consensus 656 ~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~ls~N~l~g~ 721 (869)
. .++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..+ ..+..+++|+.||+++|++.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 2356666666666655433 223445566666666665444332 2344556666667777766554
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=215.54 Aligned_cols=202 Identities=22% Similarity=0.205 Sum_probs=151.9
Q ss_pred CCCCEEECcCCcCccccCccc--cCCCCCCEEeCCCCcccccCC----cCcCCCCCCcEEEccCCCCCCCCCcCcCCCCC
Q 002896 490 TNLIRLRLNRNHLTCNISESF--GIHPKLTFIDLSHNNFYGQIS----SDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQ 563 (869)
Q Consensus 490 ~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~ 563 (869)
++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555555 556666666666666665433 23346788888888888888777788888888
Q ss_pred CCEEEccCCccccc--C--CcccccCcccceeeccCccccccCc--c-cccCCccccccccccccccccccccccCC---
Q 002896 564 LHVIDLSANHIIGK--I--PSEIGKLSSLIKLILRRNQLFGQLP--S-ELGSLIQLEYLDLSSNRLSNSIPRSLGNL--- 633 (869)
Q Consensus 564 L~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--- 633 (869)
|++|++++|++.+. + +..+..+++|++|++++|+++...+ . .+..+++|++|+|++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 88888888887642 2 2334678899999999998863322 1 35678999999999999998888777777
Q ss_pred CCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896 634 VKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696 (869)
Q Consensus 634 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 696 (869)
++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999998 5676664 7999999999999875 33 6788999999999999976
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.5e-23 Score=224.18 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=154.4
Q ss_pred CCeEEccCCCCcccCCccccCC--CCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccc-cCccccCCCCCCEEeC
Q 002896 445 MTLLALYDNALSGVIPEELGNL--VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCN-ISESFGIHPKLTFIDL 521 (869)
Q Consensus 445 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l 521 (869)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+.+..+++|++|++++|.+++. .+..+..+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-------- 117 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-------- 117 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB--------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC--------
Confidence 555666665554 2334444 556666666666555544444455555555555554433 33344444
Q ss_pred CCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCC-cccc-cCCcccccCcccceeeccCc-cc
Q 002896 522 SHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSAN-HIIG-KIPSEIGKLSSLIKLILRRN-QL 598 (869)
Q Consensus 522 s~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~-~~p~~l~~l~~L~~L~L~~n-~l 598 (869)
++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+.++++|++|++++| .+
T Consensus 118 ----------------~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 118 ----------------SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp ----------------CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred ----------------CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 44444444444444444444555555666666665 4443 24444556666666666666 65
Q ss_pred ccc-CcccccCCc-cccccccccc--ccc-ccccccccCCCCCCeeeCcCCc-CCcccchhhhcccccccccccccc-cC
Q 002896 599 FGQ-LPSELGSLI-QLEYLDLSSN--RLS-NSIPRSLGNLVKLHYLNLSTNQ-FIQEIPIKLEKLIHLSELDLSHNF-LG 671 (869)
Q Consensus 599 ~~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~ 671 (869)
++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 543 455566677 7777777777 444 4556677788888888888888 677777788888888888888884 33
Q ss_pred CchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcC-CCCcEEEccCCcccccCCC
Q 002896 672 KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEM-NGLLYIDISYNELHGPIPN 724 (869)
Q Consensus 672 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~~p~ 724 (869)
......++.+++|+.|++++| ++.. .+..+ ..+..|++++|++++..|.
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 333346788999999999998 4443 33333 2366667899999998874
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2e-23 Score=228.10 Aligned_cols=261 Identities=21% Similarity=0.204 Sum_probs=177.4
Q ss_pred ccccCCCcCcccccccccCCCCCCeEEccCCCCcccCC----ccccCCC-CCcEEecCCCcCcCCCC-CcCC-----CCC
Q 002896 423 ELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIP----EELGNLV-KLTMLTLSDNQLQGSIP-NLRN-----LTN 491 (869)
Q Consensus 423 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~-~l~~-----l~~ 491 (869)
.++++.|.+++.+|..+...++|+.|++++|.+++..+ ..+..++ +|++|++++|.+.+..+ .+.. .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999999999888888889999999999998877 7788888 99999999999987654 3333 289
Q ss_pred CCEEECcCCcCccccCcccc----CC-CCCCEEeCCCCcccccCCcCc----CC-CCCCcEEEccCCCCCCCCCcCcCCC
Q 002896 492 LIRLRLNRNHLTCNISESFG----IH-PKLTFIDLSHNNFYGQISSDW----GK-CPNLGTFDVSVNNIIGSLPPEIGDS 561 (869)
Q Consensus 492 L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~ls~n~l~~~~~~~~----~~-~~~L~~L~ls~n~l~~~~p~~l~~l 561 (869)
|++|++++|.+++..+..+. .. ++|++|++++|.+++..+..+ .. +++|++|++++|.+++..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~---- 157 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE---- 157 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH----
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH----
Confidence 99999999999877666443 33 788888888888876544332 22 235555555555554322111
Q ss_pred CCCCEEEccCCcccccCCcccccCc-ccceeeccCccccccCcccc----cCC-cccccccccccccccc----cccccc
Q 002896 562 SQLHVIDLSANHIIGKIPSEIGKLS-SLIKLILRRNQLFGQLPSEL----GSL-IQLEYLDLSSNRLSNS----IPRSLG 631 (869)
Q Consensus 562 ~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~----~~~~~~ 631 (869)
++..+..++ +|++|++++|++.+..+..+ ..+ ++|++|+|++|.+++. ++..+.
T Consensus 158 ----------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 158 ----------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp ----------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred ----------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 112222333 55555555555554444322 233 4677777777776652 344454
Q ss_pred C-CCCCCeeeCcCCcCCcccchh----hhcccccccccccccccCCch-------hhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 632 N-LVKLHYLNLSTNQFIQEIPIK----LEKLIHLSELDLSHNFLGKEI-------PSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 632 ~-l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
. .++|+.|||++|++.+..+.. +..+++|++|+|++|.+.+.. +..+..+++|+.||+++|++.+..+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 357888888888887665533 356678888888888854443 3466778889999999999888755
Q ss_pred hhhh
Q 002896 700 RCFE 703 (869)
Q Consensus 700 ~~l~ 703 (869)
..+.
T Consensus 302 ~~~~ 305 (362)
T 3goz_A 302 IPIS 305 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.2e-23 Score=230.17 Aligned_cols=138 Identities=22% Similarity=0.235 Sum_probs=110.1
Q ss_pred CCCCEEEccCCccc-ccCC---cccccCcccceeeccCcccc--c---cCcccccCCcccccccccccccc----ccccc
Q 002896 562 SQLHVIDLSANHII-GKIP---SEIGKLSSLIKLILRRNQLF--G---QLPSELGSLIQLEYLDLSSNRLS----NSIPR 628 (869)
Q Consensus 562 ~~L~~L~Ls~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~--~---~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~ 628 (869)
++|++|++++|+++ +.++ ..+..+++|++|++++|.+. + ..+..+..+++|++|+|++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67777777777776 3333 35667778888888888776 2 34446778889999999999986 56788
Q ss_pred cccCCCCCCeeeCcCCcCCcc----cchhhhc--ccccccccccccccCC----chhhhh-cCCCCCcEEeCCCCCCCCC
Q 002896 629 SLGNLVKLHYLNLSTNQFIQE----IPIKLEK--LIHLSELDLSHNFLGK----EIPSQI-CNMRSLEMLNLSHNNLSDF 697 (869)
Q Consensus 629 ~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~ 697 (869)
.+..+++|+.|+|++|++++. ++..+.. +++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 889999999999999999876 5666644 8999999999999988 488777 6789999999999999988
Q ss_pred cc
Q 002896 698 IP 699 (869)
Q Consensus 698 ~p 699 (869)
.+
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 74
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.7e-21 Score=205.86 Aligned_cols=191 Identities=24% Similarity=0.348 Sum_probs=128.2
Q ss_pred CCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeec
Q 002896 514 PKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLIL 593 (869)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 593 (869)
++|++|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 3444455554444432 2 34455555555555555554322 55566666666666665542 24666666666666
Q ss_pred cCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCc
Q 002896 594 RRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKE 673 (869)
Q Consensus 594 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 673 (869)
++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 115 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 6666655422 6677777777777777775543 7777888888888888776544 77888888888888888766
Q ss_pred hhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccc
Q 002896 674 IPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 674 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 720 (869)
.+ +..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 54 7788888888888888887653 7788888888888888876
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2.2e-21 Score=198.77 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=126.7
Q ss_pred CCCEEECcCCcCccccCccccCCCCCCEEeCCCCc-ccccCCcCcCCCCCCcEEEccC-CCCCCCCCcCcCCCCCCCEEE
Q 002896 491 NLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNN-FYGQISSDWGKCPNLGTFDVSV-NNIIGSLPPEIGDSSQLHVID 568 (869)
Q Consensus 491 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~~~L~~L~ls~-n~l~~~~p~~l~~l~~L~~L~ 568 (869)
++++|++++|.+++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555555555566666666666664 5555555566666666666665 666655555566666666666
Q ss_pred ccCCcccccCCcccccCcccc---eeeccCc-cccccCcccccCCcccc-ccccccccccccccccccCCCCCCeeeCcC
Q 002896 569 LSANHIIGKIPSEIGKLSSLI---KLILRRN-QLFGQLPSELGSLIQLE-YLDLSSNRLSNSIPRSLGNLVKLHYLNLST 643 (869)
Q Consensus 569 Ls~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 643 (869)
+++|++++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ +|++++|+++...+..|.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666664 444 55666665 7777777 66666666677777777 7777777777433334444 6777778877
Q ss_pred Cc-CCcccchhhhcc-cccccccccccccCCchhhhhcCCCCCcEEeCCCC
Q 002896 644 NQ-FIQEIPIKLEKL-IHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692 (869)
Q Consensus 644 N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 692 (869)
|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 766666667777 7788888888887654333 5677888888765
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=9.3e-21 Score=189.54 Aligned_cols=182 Identities=26% Similarity=0.285 Sum_probs=118.8
Q ss_pred CCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCc
Q 002896 70 PCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPP 149 (869)
Q Consensus 70 ~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~ 149 (869)
.|.|.+|.|+..+ +. .+|..+ .++|++|++++|.+++..+..++.+++|++|++++|.+.+..+.
T Consensus 6 ~C~~~~v~c~~~~------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG------------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSSC------------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCCC------------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 4899999996432 11 233333 35788999999988876666788888888888888888866556
Q ss_pred ccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCC
Q 002896 150 QIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSL 229 (869)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 229 (869)
.|+++++|++|++++|.+++..+..++++++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 67788888888888888876555556777777777777777766555556666666666666666665444445555555
Q ss_pred CEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCC
Q 002896 230 SSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 273 (869)
Q Consensus 230 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 273 (869)
++|++++|.+.+ .+++|++|+++.|+++|.+|..++.
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 555555554432 2334444444444444444444443
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.4e-20 Score=200.40 Aligned_cols=193 Identities=29% Similarity=0.444 Sum_probs=118.6
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183 (869)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (869)
.++++|++|++++|.++. +| .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+++. ..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 346677777777777763 44 56777777777777777764 333 77777777777777777642 25667777777
Q ss_pred eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263 (869)
Q Consensus 184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (869)
|++++|++++.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 777777766532 26666666666666666664322 5566666666666666654322 55666666666666666
Q ss_pred CCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccccc
Q 002896 264 SSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLS 312 (869)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~ 312 (869)
++..+ +..+++|++|++++|++.+..+ +..+++|++|++++|.++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 54322 4555555555555555553332 455555555555555554
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=190.22 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=127.6
Q ss_pred EEEccCCcccccCCcccccCcccceeeccCccccccCc-ccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896 566 VIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLP-SELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644 (869)
Q Consensus 566 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 644 (869)
.+++++|.++. +|..+. +.++.|++++|.+.+..+ ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555442 343332 234566666666655543 34667888888888888888777778899999999999999
Q ss_pred cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896 645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN 724 (869)
Q Consensus 645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~ 724 (869)
++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99888888899999999999999999999899999999999999999999999999999999999999999999999885
Q ss_pred Cc
Q 002896 725 ST 726 (869)
Q Consensus 725 ~~ 726 (869)
.+
T Consensus 172 ~~ 173 (220)
T 2v70_A 172 AW 173 (220)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.7e-20 Score=213.98 Aligned_cols=208 Identities=24% Similarity=0.377 Sum_probs=121.5
Q ss_pred CCCCCCCCCCCCCCC-----ccCce-eeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCC
Q 002896 57 LPSWTLNNATKISPC-----AWFGI-HCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNL 130 (869)
Q Consensus 57 l~~W~~~~~~~~~~c-----~w~gv-~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l 130 (869)
+.+|. .+.++| .|.|+ .|. .++++.+++++.. +.+ +|..+. ++|++|+|++|.++ .+| ..+
T Consensus 33 l~~W~----~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~-L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l 99 (571)
T 3cvr_A 33 WDKWE----KQALPGENRNEAVSLLKECL-INQFSELQLNRLN-LSS-LPDNLP--PQITVLEITQNALI-SLP---ELP 99 (571)
T ss_dssp HHHHH----TTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSC-CSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCC
T ss_pred HHHHh----ccCCccccccchhhhccccc-cCCccEEEeCCCC-CCc-cCHhHc--CCCCEEECcCCCCc-ccc---ccc
Confidence 34565 344567 79998 775 3456777777665 655 555443 66777777777766 455 345
Q ss_pred CcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeec
Q 002896 131 SMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYL 210 (869)
Q Consensus 131 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 210 (869)
++|++|+|++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~------- 160 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT------- 160 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT-------
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC-------
Confidence 666666666666664 555 443 66666666666654 443 45555555555555554 222 234
Q ss_pred cccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccC-------CccccC
Q 002896 211 HNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSL-------SILELG 283 (869)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~ 283 (869)
+|++|++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|+++
T Consensus 161 -----------------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 161 -----------------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp -----------------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred -----------------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 44555555555443 333 33 45555555555554 3333 332 44 777777
Q ss_pred cccCCcccCccccCCCCCCeeecccccccCCCCCcccCC
Q 002896 284 ENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNL 322 (869)
Q Consensus 284 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 322 (869)
+|+++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 77776 466666667777777777777777766665543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.9e-20 Score=200.90 Aligned_cols=243 Identities=17% Similarity=0.118 Sum_probs=167.8
Q ss_pred CccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCC-c
Q 002896 71 CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIP-P 149 (869)
Q Consensus 71 c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p-~ 149 (869)
|.|..|.|+..+ ++ .+|..+ .+++++|+|++|.++...+.+|.++++|++|+|++|.+.+.+| .
T Consensus 9 C~~~~v~C~~~~------------Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQESK------------VT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEESTT------------CC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecCCC------------CC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 788888886321 33 455555 3688999999999985555678999999999999999877666 4
Q ss_pred ccCCCCCCCE-EEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccc-cCCCCCCCccccCCC
Q 002896 150 QIGHLSYIEA-LHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHN-NSLSGSIPSEIGNLK 227 (869)
Q Consensus 150 ~l~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~ 227 (869)
.|.++++|++ +.+..|+++...|..|.++++|++|++++|++.+..+..+....++..|++.+ +.+....+..+..+.
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 6788888775 56667888877778888899999999999988877777777777788888865 455544445565554
Q ss_pred -CCCEEEccCCcCCCCcccccCCCCCCCEEEccC-CCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeee
Q 002896 228 -SLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRN-NSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLY 305 (869)
Q Consensus 228 -~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 305 (869)
.+++|++++|+++. +|.......+|++|++.+ |.++...+..|..+++|++|++++|+++...+..+ .+|+.|.
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLR 229 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEE
T ss_pred hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhh
Confidence 57778888888874 444444556778888765 44543333456777888888888887774433333 4444444
Q ss_pred cccccccCCCCCcccCCCCCCeEeccCC
Q 002896 306 LYTNSLSGSIPSEIGNLKSLSGLELADN 333 (869)
Q Consensus 306 L~~n~~~~~~p~~l~~l~~L~~L~Ls~n 333 (869)
+.++.--..+| .+..+++|+.+++.++
T Consensus 230 ~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 44433333455 3566677777776653
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.8e-20 Score=187.39 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=130.3
Q ss_pred CEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896 565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644 (869)
Q Consensus 565 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 644 (869)
+.++++++.++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555554 3444333 56667777777777666667778888888888888888888888999999999999999
Q ss_pred cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896 645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN 724 (869)
Q Consensus 645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~ 724 (869)
++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 98877777788899999999999999999899999999999999999999999988999999999999999999998874
Q ss_pred C
Q 002896 725 S 725 (869)
Q Consensus 725 ~ 725 (869)
.
T Consensus 171 ~ 171 (220)
T 2v9t_B 171 K 171 (220)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.4e-19 Score=179.29 Aligned_cols=180 Identities=23% Similarity=0.248 Sum_probs=120.7
Q ss_pred cEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCc
Q 002896 110 KYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSN 189 (869)
Q Consensus 110 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (869)
+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|+++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45677777766 455444 357888888888887665666778888888888888877655556677777777777777
Q ss_pred ccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCC
Q 002896 190 FLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPS 269 (869)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 269 (869)
++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 7776666666777777777777777776555556667777777777776665555556666666666666665543
Q ss_pred CCCCCccCCccccCcccCCcccCccccCCC
Q 002896 270 EIGNLKSLSILELGENRLNGSIPLSLGNLT 299 (869)
Q Consensus 270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~ 299 (869)
.+++|+.|+++.|+++|.+|.+++.++
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 234566666666666666665555443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.1e-19 Score=198.19 Aligned_cols=181 Identities=23% Similarity=0.231 Sum_probs=142.9
Q ss_pred cEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccc-cCcccceeeccCccccccCcccccCCcccccccccc
Q 002896 541 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIG-KLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 619 (869)
Q Consensus 541 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 619 (869)
+.++++++.++. +|..+. +.++.|+|++|++++..+..+. ++++|+.|+|++|++.+..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 455566555553 444433 3567777777777776666666 778888888888888777777788888888888888
Q ss_pred ccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhh---cCCCCCcEEeCCCCCCCC
Q 002896 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQI---CNMRSLEMLNLSHNNLSD 696 (869)
Q Consensus 620 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~ 696 (869)
|++++..+..|..+++|+.|+|++|++.+..|..|.++++|+.|+|++|++++..+..| ..+++|+.|||++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88887777788888889999999998888888888888899999999999877666666 678999999999999999
Q ss_pred CcchhhhcCCC--CcEEEccCCcccccCCC
Q 002896 697 FIPRCFEEMNG--LLYIDISYNELHGPIPN 724 (869)
Q Consensus 697 ~~p~~l~~l~~--L~~L~ls~N~l~g~~p~ 724 (869)
..+..+..++. ++.|++++|++.|.|..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 88888888887 48899999999998763
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.9e-19 Score=203.81 Aligned_cols=186 Identities=24% Similarity=0.316 Sum_probs=93.4
Q ss_pred CCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccC
Q 002896 468 KLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSV 547 (869)
Q Consensus 468 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~ 547 (869)
+++.|++++|.+.+..+.+ .++|++|++++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 6777777777776532223 2556666666666653 22 234556666666666554 333 332 555555555
Q ss_pred CCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccccccccccccccccc
Q 002896 548 NNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIP 627 (869)
Q Consensus 548 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 627 (869)
|++++ +|. .+++|++|++++|++++ +|. .+++|+.|++++|++++ +|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-------------------------lp 176 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-------------------------LP 176 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-------------------------cc
Confidence 55554 333 34555555555555543 332 33444555555554444 33
Q ss_pred ccccCCCCCCeeeCcCCcCCcccchhhhccccc-------ccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcch
Q 002896 628 RSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHL-------SELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR 700 (869)
Q Consensus 628 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 700 (869)
. |. ++|+.|+|++|+++ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 3 33 44555555555444 2332 322 33 55555555553 3444444455555555555555555555
Q ss_pred hhhc
Q 002896 701 CFEE 704 (869)
Q Consensus 701 ~l~~ 704 (869)
.+..
T Consensus 249 ~l~~ 252 (571)
T 3cvr_A 249 SLSQ 252 (571)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.7e-19 Score=195.77 Aligned_cols=222 Identities=19% Similarity=0.168 Sum_probs=137.0
Q ss_pred CCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCC-cCcCCCCCCcE-EEccCCCCCCCCCcCcCCCCCCCEE
Q 002896 490 TNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQIS-SDWGKCPNLGT-FDVSVNNIIGSLPPEIGDSSQLHVI 567 (869)
Q Consensus 490 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~-L~ls~n~l~~~~p~~l~~l~~L~~L 567 (869)
+++++|++++|+++...+..|..+++|++|++++|++.+.++ ..|.+++++.+ +.+.+|+++...|..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 455666666666665555566666666666666666654443 34566666554 4445566666666666777777777
Q ss_pred EccCCcccccCCcccccCcccceeeccC-ccccccCcccccCCc-cccccccccccccccccccccCCCCCCeeeCcCCc
Q 002896 568 DLSANHIIGKIPSEIGKLSSLIKLILRR-NQLFGQLPSELGSLI-QLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ 645 (869)
Q Consensus 568 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 645 (869)
++++|++.+..+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++...+..| ...+|+.|++++|+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence 7777777655555555566666777755 345555555555554 47777888888775444333 44677788877543
Q ss_pred CCcccc-hhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCC
Q 002896 646 FIQEIP-IKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYN 716 (869)
Q Consensus 646 l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 716 (869)
..+.+| ..|.++++|++|||++|+|+...+..| .+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 334444 456788888888888888865554444 444555544443333445 3677888888888754
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1e-18 Score=177.25 Aligned_cols=161 Identities=25% Similarity=0.278 Sum_probs=119.8
Q ss_pred CCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCC
Q 002896 66 TKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSG 145 (869)
Q Consensus 66 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~ 145 (869)
.+...|+|++|.|...+ .+.+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|.+.+
T Consensus 14 ~~~~~Cs~~~v~c~~~~-------------l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKR-------------HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp CTTCEEETTEEECTTSC-------------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEeCCEeEccCCC-------------cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 45678999999996321 234454443 788999999999998888888899999999999998875
Q ss_pred CCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccC
Q 002896 146 RIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGN 225 (869)
Q Consensus 146 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 225 (869)
..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 55566788888888888888888666666777888888888888777 55666677777777777777776555555666
Q ss_pred CCCCCEEEccCCcCCCC
Q 002896 226 LKSLSSLALGNNKLCGS 242 (869)
Q Consensus 226 l~~L~~L~L~~n~l~~~ 242 (869)
+++|++|++++|.+...
T Consensus 158 l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTCCEEECTTSCBCTT
T ss_pred CCCCCEEEeeCCCccCC
Confidence 66666666666666543
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=4.6e-19 Score=179.75 Aligned_cols=157 Identities=27% Similarity=0.323 Sum_probs=122.4
Q ss_pred CEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896 565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644 (869)
Q Consensus 565 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 644 (869)
+.++.++++++ .+|..+. ++|+.|++++|.+.+..|..|..+++|++|+|++|++....+..|..+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34555555544 3343332 56666666666666666666677777777788888777666667788888888888888
Q ss_pred cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896 645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN 724 (869)
Q Consensus 645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~ 724 (869)
++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|+++|.|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 888777777888888888888888886 6788889999999999999999998888899999999999999999998874
Q ss_pred C
Q 002896 725 S 725 (869)
Q Consensus 725 ~ 725 (869)
.
T Consensus 178 ~ 178 (229)
T 3e6j_A 178 I 178 (229)
T ss_dssp G
T ss_pred h
Confidence 3
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2e-18 Score=181.84 Aligned_cols=170 Identities=24% Similarity=0.313 Sum_probs=118.6
Q ss_pred CCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccc
Q 002896 537 CPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLD 616 (869)
Q Consensus 537 ~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 616 (869)
+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|+.|++++|.+.+. ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 34445555555544432 2 24555556666666665554332 55566666666666665542 2266777777777
Q ss_pred cccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCC
Q 002896 617 LSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSD 696 (869)
Q Consensus 617 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 696 (869)
+++|++++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 777777754 3677788888888888888765 568888888888888888877766 8888899999999998888
Q ss_pred CcchhhhcCCCCcEEEccCCcccc
Q 002896 697 FIPRCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 697 ~~p~~l~~l~~L~~L~ls~N~l~g 720 (869)
. | .+..+++|+.|++++|++++
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-h-hhccCCCCCEEECcCCcccC
Confidence 5 3 48888899999999998876
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=172.13 Aligned_cols=156 Identities=22% Similarity=0.174 Sum_probs=128.8
Q ss_pred cEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCC-cccccCcccceeeccCccccccCcccccCCcccccccccc
Q 002896 541 GTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIP-SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 619 (869)
Q Consensus 541 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 619 (869)
+.+++++|.++. +|..+. +.+++|++++|++++..| ..+..+++|+.|++++|.+.+..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666666653 454443 356788888888877654 3477888888888888888888888888899999999999
Q ss_pred ccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 620 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99988888889999999999999999998888889999999999999999998889999999999999999999987644
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.1e-18 Score=199.20 Aligned_cols=189 Identities=30% Similarity=0.388 Sum_probs=107.8
Q ss_pred CcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccC
Q 002896 109 LKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTS 188 (869)
Q Consensus 109 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 188 (869)
+..+++..+.+.+..+ +..+++|++|++++|.+. .+| .++.+++|++|+|++|.+++..| +.++++|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4444555555543322 345666677777776665 233 46666777777777776664433 66666666666666
Q ss_pred cccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCC
Q 002896 189 NFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIP 268 (869)
Q Consensus 189 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 268 (869)
|.+.+. +.+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 666542 2456666666666666666542 3355666666666666666543 345555666666666666554433
Q ss_pred CCCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccC
Q 002896 269 SEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSG 313 (869)
Q Consensus 269 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 313 (869)
+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55555555555555555532 235555555555555555543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.9e-18 Score=180.67 Aligned_cols=149 Identities=26% Similarity=0.428 Sum_probs=82.8
Q ss_pred CCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCce
Q 002896 104 GNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNE 183 (869)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (869)
..+++|++|++++|.+... + .+..+++|++|++++|.+.+..| ++++++|++|++++|.+++ + +.++++++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 3456667777777666532 2 36666666777777666664333 6666666666666666654 2 23566666666
Q ss_pred eeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCC
Q 002896 184 LALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSF 263 (869)
Q Consensus 184 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (869)
|++++|++++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666665542 3455555555555555555533 334455555555555555543332 44444555555554444
Q ss_pred C
Q 002896 264 S 264 (869)
Q Consensus 264 ~ 264 (869)
+
T Consensus 191 ~ 191 (291)
T 1h6t_A 191 S 191 (291)
T ss_dssp C
T ss_pred C
Confidence 4
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=1.3e-19 Score=214.83 Aligned_cols=219 Identities=23% Similarity=0.232 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEe
Q 002896 34 STEEVHALLKWKTSLQNHDKGSLLPSWTLNNATKISPCAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLD 113 (869)
Q Consensus 34 ~~~~~~~ll~~k~~~~~~~~~~~l~~W~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~ 113 (869)
...++++|+++........ ...-..|. ...+..+.|.++.+.. .+++.++|.+.. +.. .+.. .|+.++
T Consensus 130 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~s~-~~~~~l~L~~n~-~~~-~~~~-----~l~~l~ 197 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSK-TAKKQQPT---GDSTPSGTATNSAVST-PLTPKIELFANG-KDE-ANQA-----LLQHKK 197 (727)
T ss_dssp --CCCHHHHHHHHHHHHHH-TTC---------------------------------------------------------
T ss_pred cccchhhhhhhhhhccccc-CcccCCCc---CCCCccccCCCceecC-CccceEEeeCCC-CCc-chhh-----HhhcCc
Confidence 4567889999987763311 22234564 2344567898888863 678888887765 444 2332 234444
Q ss_pred CCCCCCCC---------CCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCcee
Q 002896 114 LSSNSFSG---------TIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNEL 184 (869)
Q Consensus 114 Ls~n~~~~---------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 184 (869)
|+.+.+.+ ..|+.+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|
T Consensus 198 Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 275 (727)
T 4b8c_D 198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL 275 (727)
T ss_dssp ------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEE
T ss_pred cCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEE
Confidence 54444432 23445555555555555555555 45555555555555555555555 455555555555555
Q ss_pred eccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCC-CCEEEccCCCC
Q 002896 185 ALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTN-LDTLYLRNNSF 263 (869)
Q Consensus 185 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l 263 (869)
+|++|+++ .+|..++++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.+
T Consensus 276 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 276 DLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp ECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 55555555 44555555555555555555554 44444555555555555555555554444432211 11234445555
Q ss_pred CCCCC
Q 002896 264 SSSIP 268 (869)
Q Consensus 264 ~~~~~ 268 (869)
++.+|
T Consensus 354 ~~~~p 358 (727)
T 4b8c_D 354 EIPLP 358 (727)
T ss_dssp CCCCC
T ss_pred cCcCc
Confidence 44444
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.1e-17 Score=166.28 Aligned_cols=155 Identities=23% Similarity=0.308 Sum_probs=102.2
Q ss_pred CccCceeeCCCCCEEEEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcc
Q 002896 71 CAWFGIHCNHVGRVNSINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQ 150 (869)
Q Consensus 71 c~w~gv~c~~~~~v~~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~ 150 (869)
|.|..|.|... + +. .+|..+. ++|+.|+|++|.+++..+..|..+++|++|+|++|.+.+..|..
T Consensus 11 C~~~~v~c~~~-----------~-l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 11 CSNNIVDCRGK-----------G-LT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp EETTEEECTTS-----------C-CS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred ECCCEEEcCCC-----------C-cC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence 67777777532 1 22 3454443 57888888888887666667788888888888888877777777
Q ss_pred cCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCC
Q 002896 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS 230 (869)
Q Consensus 151 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 230 (869)
|.++++|++|+|++|.++...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..+..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 77777777777777777754444566666666666666666666666666666666666666666555544555555555
Q ss_pred EEEccCCcCC
Q 002896 231 SLALGNNKLC 240 (869)
Q Consensus 231 ~L~L~~n~l~ 240 (869)
+|++++|.+.
T Consensus 156 ~L~L~~N~~~ 165 (220)
T 2v9t_B 156 TMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCEE
T ss_pred EEEeCCCCcC
Confidence 5555555543
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.2e-18 Score=169.50 Aligned_cols=135 Identities=25% Similarity=0.309 Sum_probs=101.0
Q ss_pred cccccccccccccccccc-cccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896 611 QLEYLDLSSNRLSNSIPR-SLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689 (869)
Q Consensus 611 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 689 (869)
+|++|++++|.+++..+. .|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 666777777777665553 4777788888888888888777788888888888888888888877777888888888888
Q ss_pred CCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCCC
Q 002896 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCGD 745 (869)
Q Consensus 690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~ 745 (869)
++|++++.+|..|..+++|++|++++|+++|.|+..+.........+.++...|+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence 88888888888888888889999999999888875432222222234455556654
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.9e-18 Score=195.39 Aligned_cols=204 Identities=27% Similarity=0.377 Sum_probs=163.4
Q ss_pred CCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCcccccccccee
Q 002896 129 NLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAIL 208 (869)
Q Consensus 129 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 208 (869)
.+..+..+.++.+.+.+.++ +..+.+|+.|++++|.+.. +| .+..+++|++|+|++|.+.+..+ +..+++|+.|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 34567778888887775443 5678999999999999874 34 68899999999999999987655 8899999999
Q ss_pred eccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCC
Q 002896 209 YLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLN 288 (869)
Q Consensus 209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 288 (869)
+|++|.+.+. | .+..+++|++|++++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.
T Consensus 93 ~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 9999998853 3 688899999999999998863 4578889999999999998865 56888889999999999888
Q ss_pred cccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccc
Q 002896 289 GSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTN 348 (869)
Q Consensus 289 ~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 348 (869)
+..| +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+.+.....+..+..
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~ 222 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPINHQSNLVV 222 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCCCCCSSCEE
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCcccccccEEe
Confidence 7655 88888999999999988764 3 5788888889998888887654444444333
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=8.3e-18 Score=166.29 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=114.5
Q ss_pred CCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCe
Q 002896 559 GDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHY 638 (869)
Q Consensus 559 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 638 (869)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455666666666665 334 4666666667777666443 2335667788888888888888777788888888888
Q ss_pred eeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcc
Q 002896 639 LNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNEL 718 (869)
Q Consensus 639 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 718 (869)
|++++|++++..|..+..+++|++|++++|...+.+| .+..+++|+.|++++|++++.. .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 8888888888888888888888999999888334455 6888999999999999998853 788889999999999987
Q ss_pred cc
Q 002896 719 HG 720 (869)
Q Consensus 719 ~g 720 (869)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=8.2e-18 Score=183.28 Aligned_cols=157 Identities=26% Similarity=0.173 Sum_probs=86.9
Q ss_pred CcEEEccCCCCCCCCCcCcC-CCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccc
Q 002896 540 LGTFDVSVNNIIGSLPPEIG-DSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLS 618 (869)
Q Consensus 540 L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 618 (869)
++.|++++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++|++.+..+..|..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444444444443 45555555555555554444445555555555555555555555555556666666666
Q ss_pred cccccccccccccCCCCCCeeeCcCCcCCcccchhh---hcccccccccccccccCCchhhhhcCCCC--CcEEeCCCCC
Q 002896 619 SNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKL---EKLIHLSELDLSHNFLGKEIPSQICNMRS--LEMLNLSHNN 693 (869)
Q Consensus 619 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~ 693 (869)
+|++++..|..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666665555566666666666666666655444333 44666666666666666555556666655 3666666666
Q ss_pred CCC
Q 002896 694 LSD 696 (869)
Q Consensus 694 l~~ 696 (869)
+..
T Consensus 201 ~~C 203 (361)
T 2xot_A 201 LEC 203 (361)
T ss_dssp EEC
T ss_pred ccC
Confidence 653
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.8e-17 Score=163.91 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=105.7
Q ss_pred CCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccccc
Q 002896 536 KCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYL 615 (869)
Q Consensus 536 ~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 615 (869)
.+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455556666665555 333 4556666666666666543 22356667777777777777776666677777788888
Q ss_pred ccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCC
Q 002896 616 DLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695 (869)
Q Consensus 616 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 695 (869)
++++|.+++..|..+..+++|+.|++++|+..+.+| .+..+++|++|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 888888877777778888888888888887334455 5788888888888888886643 6778888888888888876
Q ss_pred C
Q 002896 696 D 696 (869)
Q Consensus 696 ~ 696 (869)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=7.8e-18 Score=199.56 Aligned_cols=225 Identities=22% Similarity=0.245 Sum_probs=124.5
Q ss_pred CCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEcc
Q 002896 467 VKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVS 546 (869)
Q Consensus 467 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls 546 (869)
+.++.|++.+|.+.... ...++.++|+.+.+. .++++.|.+. ..+..+..++.|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~-----~~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN-----QALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCcch-----hhHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEECC
Confidence 44666666666655421 122344444444332 2334444444 456677888889999999
Q ss_pred CCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccc
Q 002896 547 VNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSI 626 (869)
Q Consensus 547 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 626 (869)
+|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 99887 67777778999999999999998 78888999999999999999998 67888999999999999999997 67
Q ss_pred cccccCCCCCCeeeCcCCcCCcccchhhhcccc-cccccccccccCCchhhhhcCCCCCcEEeCCCC--------CCCCC
Q 002896 627 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIH-LSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN--------NLSDF 697 (869)
Q Consensus 627 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~ 697 (869)
|..|+.+++|+.|+|++|++++.+|..+..+.. +..|+|++|.+++.+|. .|+.|++++| .+.+.
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~ 382 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQS 382 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcccc
Confidence 888999999999999999999999998876543 33589999999998885 4567777777 55555
Q ss_pred cchhhhcCCCCcEEEccCCccccc
Q 002896 698 IPRCFEEMNGLLYIDISYNELHGP 721 (869)
Q Consensus 698 ~p~~l~~l~~L~~L~ls~N~l~g~ 721 (869)
.+..+..+..+....+++|-+.+.
T Consensus 383 ~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 383 TEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp -------------------CCCGG
T ss_pred ccchhhcccccceeeeeccccccc
Confidence 666667777788889999988643
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-17 Score=171.76 Aligned_cols=167 Identities=20% Similarity=0.245 Sum_probs=111.4
Q ss_pred CcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccccccccc
Q 002896 540 LGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSS 619 (869)
Q Consensus 540 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 619 (869)
+..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 333444444443221 34445555555555555542 23 45556666666666666655444 56677777777777
Q ss_pred ccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 620 NRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 620 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
|++++. |. +.. ++|+.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 777653 22 222 7788888888887764 3577888888888888888665 3 578888888888888888887
Q ss_pred hhhhcCCCCcEEEccCCccccc
Q 002896 700 RCFEEMNGLLYIDISYNELHGP 721 (869)
Q Consensus 700 ~~l~~l~~L~~L~ls~N~l~g~ 721 (869)
..+..+++|+.|++++|++++.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 6678888899999999988775
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.4e-17 Score=160.94 Aligned_cols=155 Identities=23% Similarity=0.253 Sum_probs=96.7
Q ss_pred ccceeeccCccccccCcc-cccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccc
Q 002896 587 SLIKLILRRNQLFGQLPS-ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDL 665 (869)
Q Consensus 587 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 665 (869)
+|+.|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555544443 3556667777777777777666777777777777777777777777766777777777777
Q ss_pred cccccCCchhhhhcCCCCCcEEeCCCCCCCCCcch-hhhcCCCCcEEEccCCcccccCCCCccccccchhhhcCCCCCCC
Q 002896 666 SHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPR-CFEEMNGLLYIDISYNELHGPIPNSTAFSDALMEALQGNEGLCG 744 (869)
Q Consensus 666 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~ 744 (869)
++|++++.+|..|..+++|++|+|++|++++..+- .+.. .++...+..+...|..|.. +.......+..+...|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcC
Confidence 77777777777777888888888888888776442 1111 1222234556666666642 22222233444555564
Q ss_pred C
Q 002896 745 D 745 (869)
Q Consensus 745 ~ 745 (869)
.
T Consensus 186 ~ 186 (192)
T 1w8a_A 186 S 186 (192)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=8.7e-20 Score=209.52 Aligned_cols=189 Identities=20% Similarity=0.224 Sum_probs=109.8
Q ss_pred CCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCC-------------CCCCCCccccCCCcCceee-ccCcccCC
Q 002896 128 GNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQ-------------LSGPIPHEVGGLSSLNELA-LTSNFLKG 193 (869)
Q Consensus 128 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~ 193 (869)
..+++|+.|+|++|.+. .+|..+++|++|+.|++++|. ..+.+|..++++++|++|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45667777777777765 567667777777777665543 3444555556666666665 444432
Q ss_pred CCCCccccccccceeeccccCCCCCCCccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCC
Q 002896 194 SIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLSSLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGN 273 (869)
Q Consensus 194 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 273 (869)
.+|+.+.+++|.+....+ ..|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+++
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 234444455554442111 136666666666664 444 566666666666666665 55556666
Q ss_pred CccCCccccCcccCCcccCccccCCCCCCeeecccccccCCC-CCcccCCCCCCeEeccCCcccccc
Q 002896 274 LKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSI-PSEIGNLKSLSGLELADNELSSSI 339 (869)
Q Consensus 274 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~ 339 (869)
+++|+.|++++|++++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|.+++..
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 6666666666666654 34 5566666666666666666554 555666666666666666655543
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.1e-19 Score=203.10 Aligned_cols=198 Identities=19% Similarity=0.173 Sum_probs=141.4
Q ss_pred cCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccce
Q 002896 511 GIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIK 590 (869)
Q Consensus 511 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 590 (869)
...+.|+.|++++|.++ .+|..++.|++|+.|++++|.....+|. .+..+...+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 34566666777766665 4455566666666666544321000000 00011134555666667777777
Q ss_pred ee-ccCccccccCcc-----ccc--CCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccc
Q 002896 591 LI-LRRNQLFGQLPS-----ELG--SLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSE 662 (869)
Q Consensus 591 L~-L~~n~l~~~~~~-----~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 662 (869)
|+ ++.|.+...... .+. ....|+.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.+++|+.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence 76 454433211100 000 11258899999999997 565 999999999999999998 78899999999999
Q ss_pred ccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCc-chhhhcCCCCcEEEccCCcccccCCCC
Q 002896 663 LDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFI-PRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 663 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
|+|++|.+++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|++++|++++..|..
T Consensus 491 L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 491 LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999987 56 8999999999999999999987 999999999999999999999987743
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.7e-17 Score=168.54 Aligned_cols=150 Identities=27% Similarity=0.335 Sum_probs=66.9
Q ss_pred cCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeeccccCCCCCCCccccCCCCCC
Q 002896 151 IGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLHNNSLSGSIPSEIGNLKSLS 230 (869)
Q Consensus 151 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 230 (869)
+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +.++++|++|++++|.+++. |. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Cccc
Confidence 334444444444444443 222 34444444444444444443322 44444444444444444431 11 111 4455
Q ss_pred EEEccCCcCCCCcccccCCCCCCCEEEccCCCCCCCCCCCCCCCccCCccccCcccCCcccCccccCCCCCCeeeccccc
Q 002896 231 SLALGNNKLCGSIPLFLGNLTNLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNS 310 (869)
Q Consensus 231 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~ 310 (869)
+|++++|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|.
T Consensus 110 ~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 555555554432 1 344455555555555555432 2 344445555555555555433 334455555555555555
Q ss_pred ccC
Q 002896 311 LSG 313 (869)
Q Consensus 311 ~~~ 313 (869)
+++
T Consensus 184 ~~~ 186 (263)
T 1xeu_A 184 CVN 186 (263)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=3.1e-17 Score=176.35 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=84.5
Q ss_pred CccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccc-cccccccccCCchhhhhcCCCCCcEE
Q 002896 609 LIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS-ELDLSHNFLGKEIPSQICNMRSLEML 687 (869)
Q Consensus 609 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 687 (869)
+++|+.++|++|+++.+.+.+|.++++|+.|+|++| +....+..|.++++|+ .+++.+ .++...+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678888888888888777778888888888888887 6666667788888888 888887 7777777888888888888
Q ss_pred eCCCCCCCCCcchhhhcCCCCcEEEc
Q 002896 688 NLSHNNLSDFIPRCFEEMNGLLYIDI 713 (869)
Q Consensus 688 ~Ls~N~l~~~~p~~l~~l~~L~~L~l 713 (869)
++++|+++.+.+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 88888888888888888888888763
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=157.33 Aligned_cols=115 Identities=24% Similarity=0.296 Sum_probs=102.0
Q ss_pred ccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689 (869)
Q Consensus 610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 689 (869)
++|++|++++|.++ .+|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46777888888887 56678888899999999999998888888999999999999999998888889999999999999
Q ss_pred CCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
++|++++..+..|..+++|++|++++|++.|.|+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999988888999999999999999999988743
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=5.2e-16 Score=145.78 Aligned_cols=128 Identities=24% Similarity=0.306 Sum_probs=101.2
Q ss_pred cccceeeccCcccc-ccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccc
Q 002896 586 SSLIKLILRRNQLF-GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD 664 (869)
Q Consensus 586 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 664 (869)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 55566666777777777777777765 5778888888899998888887888888888999999
Q ss_pred ccccccCCc-hhhhhcCCCCCcEEeCCCCCCCCCcc---hhhhcCCCCcEEEccC
Q 002896 665 LSHNFLGKE-IPSQICNMRSLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDISY 715 (869)
Q Consensus 665 Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~ 715 (869)
+++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999998774 45788899999999999999988766 6788889999998864
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.5e-16 Score=148.89 Aligned_cols=133 Identities=25% Similarity=0.324 Sum_probs=91.0
Q ss_pred cccceeeccCcccc-ccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhccccccccc
Q 002896 586 SSLIKLILRRNQLF-GQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELD 664 (869)
Q Consensus 586 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 664 (869)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 34444445566666666666666654 5667777777777777777776777777777788888
Q ss_pred ccccccCCch-hhhhcCCCCCcEEeCCCCCCCCCcc---hhhhcCCCCcEEEccCCcccc
Q 002896 665 LSHNFLGKEI-PSQICNMRSLEMLNLSHNNLSDFIP---RCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 665 Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g 720 (869)
+++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888776643 3677788888888888888887665 577778888888888887653
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.3e-16 Score=149.03 Aligned_cols=134 Identities=25% Similarity=0.186 Sum_probs=96.3
Q ss_pred CCCCEEEccCCccc-ccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeee
Q 002896 562 SQLHVIDLSANHII-GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLN 640 (869)
Q Consensus 562 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 640 (869)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 55666666667777777777776655 5566777777777777777776676777777888888
Q ss_pred CcCCcCCccc-chhhhcccccccccccccccCCchh---hhhcCCCCCcEEeCCCCCCCCC
Q 002896 641 LSTNQFIQEI-PIKLEKLIHLSELDLSHNFLGKEIP---SQICNMRSLEMLNLSHNNLSDF 697 (869)
Q Consensus 641 Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ 697 (869)
+++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 8888776643 2667778888888888888876655 5778888888888888877664
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.8e-16 Score=168.97 Aligned_cols=221 Identities=10% Similarity=0.036 Sum_probs=106.9
Q ss_pred CCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCc----CCCCCccccCCCCCC
Q 002896 298 LTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS----LSGSIPSEIGNLKSL 373 (869)
Q Consensus 298 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L 373 (869)
+++|+++++.+ .++...+.+|.+|++|+.+++++|.+....+..|..+.++..+....+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666655 4544444455666666666666665555555555555555444443311 111122234444444
Q ss_pred C-EEEccCCcC-CCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEcc
Q 002896 374 S-NLDLSENKL-SGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALY 451 (869)
Q Consensus 374 ~-~L~Ls~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~ 451 (869)
+ .+.+....- .......-....+++.+.+.++-...........+++|+++++++|+++.+...+|.++++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4 333322110 00000000122344444444332111111111124555555555555555444455555555555555
Q ss_pred CCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCC-EEECcCCcCccccCccccCCCCCCEEeCCCCcccccC
Q 002896 452 DNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLI-RLRLNRNHLTCNISESFGIHPKLTFIDLSHNNFYGQI 530 (869)
Q Consensus 452 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 530 (869)
+| +....+. .|.++++|+ .+++.+ .++.+.+.+|..+++|+.++++.|.++...
T Consensus 259 ~n-i~~I~~~-----------------------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 259 HN-LKTIGQR-----------------------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp TT-CCEECTT-----------------------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred cc-cceehHH-----------------------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 44 4333334 455555555 555555 455555666777777777777777776666
Q ss_pred CcCcCCCCCCcEEE
Q 002896 531 SSDWGKCPNLGTFD 544 (869)
Q Consensus 531 ~~~~~~~~~L~~L~ 544 (869)
+..|.+|++|+.+.
T Consensus 314 ~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCCCEEE
T ss_pred hhhhcCCcchhhhc
Confidence 66777777777665
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.3e-15 Score=147.67 Aligned_cols=116 Identities=25% Similarity=0.230 Sum_probs=99.0
Q ss_pred ccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeC
Q 002896 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNL 689 (869)
Q Consensus 610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 689 (869)
++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56777888888877766667788888888888888888777777888888999999999998888888889999999999
Q ss_pred CCCCCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 690 SHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 690 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 999999888778888999999999999999988743
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=6.9e-16 Score=144.90 Aligned_cols=126 Identities=24% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCCEEEccCCccc-ccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeC
Q 002896 563 QLHVIDLSANHII-GKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNL 641 (869)
Q Consensus 563 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 641 (869)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444444 34444444445555555555544443 44455666666666666666556666666667777777
Q ss_pred cCCcCCcc-cchhhhcccccccccccccccCCchh---hhhcCCCCCcEEeCC
Q 002896 642 STNQFIQE-IPIKLEKLIHLSELDLSHNFLGKEIP---SQICNMRSLEMLNLS 690 (869)
Q Consensus 642 s~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls 690 (869)
++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77776653 34566677777777777777766555 566777777777765
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=3.4e-14 Score=156.67 Aligned_cols=60 Identities=5% Similarity=-0.032 Sum_probs=26.5
Q ss_pred cCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEE
Q 002896 339 IPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAIL 400 (869)
Q Consensus 339 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 400 (869)
....|.++.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++.....+|.++++|+.+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i 122 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSI 122 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhh
Confidence 3344555555555555422 33333344555555555555432 222223344444444443
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.7e-13 Score=151.09 Aligned_cols=238 Identities=12% Similarity=0.065 Sum_probs=110.0
Q ss_pred cccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCC
Q 002896 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTH 444 (869)
Q Consensus 365 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 444 (869)
..|.+|++|+.+.+.++. .......|.++++|+.+.+..+ +......+|.++..|+.+.+..+... +.........
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 345556666666665432 2233345555556665555544 22233345555666666555544321 1122223345
Q ss_pred CCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECcCCcCccccCccccCCCCCCEEeCCCC
Q 002896 445 MTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLNRNHLTCNISESFGIHPKLTFIDLSHN 524 (869)
Q Consensus 445 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n 524 (869)
|+.+.+... ++......+..+..++.+.+..+...-....+..+..++.+...... ....
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~---------------- 291 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEK---------------- 291 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTT----------------
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccc----------------
Confidence 555554322 22233334445555555555444332222234444444444433321 1122
Q ss_pred cccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcc
Q 002896 525 NFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPS 604 (869)
Q Consensus 525 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 604 (869)
.|..+.+|+.+.+.++ +...-...|.+|++|+.+++..+ ++..-..+|.+|++|+.+++..+ +...-..
T Consensus 292 --------~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 292 --------TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp --------TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred --------cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 3444444444444332 22222334455555555555432 33333345555666666666544 4444455
Q ss_pred cccCCccccccccccccccccccccccCCCCCCee
Q 002896 605 ELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYL 639 (869)
Q Consensus 605 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 639 (869)
+|.++.+|+.+++..+- . .+..+|.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 56666666666665442 2 223456666666554
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=9e-14 Score=152.42 Aligned_cols=264 Identities=13% Similarity=0.097 Sum_probs=147.1
Q ss_pred CCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCcEEecCCCcCcCCCCCcCCCCCCCEEECc
Q 002896 419 KSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLTMLTLSDNQLQGSIPNLRNLTNLIRLRLN 498 (869)
Q Consensus 419 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~l~ 498 (869)
..++.+.+.+ .++.+...+|.++ +|+.+.+.++ ++.....+|.++ +|+.+.+.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~---------------------- 166 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS---------------------- 166 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT----------------------
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC----------------------
Confidence 4555555543 3444444555553 5666666544 444444444443 355555543
Q ss_pred CCcCccccCccccCCCCCCEEeCCCCcccccCCcCcCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccC
Q 002896 499 RNHLTCNISESFGIHPKLTFIDLSHNNFYGQISSDWGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKI 578 (869)
Q Consensus 499 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 578 (869)
.++.+....|..+++|+.+++++|.++......|. +.+|+.+.+..+ +...-...|.++++|+.+++..+ ++..-
T Consensus 167 --~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~ 241 (401)
T 4fdw_A 167 --TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG 241 (401)
T ss_dssp --TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC
T ss_pred --CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc
Confidence 33333344444444444444444444433333333 344444444422 33333344445555555555443 22222
Q ss_pred CcccccCcccceeeccCccccccCcccccCCcccccccccccccc-----ccccccccCCCCCCeeeCcCCcCCcccchh
Q 002896 579 PSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLS-----NSIPRSLGNLVKLHYLNLSTNQFIQEIPIK 653 (869)
Q Consensus 579 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 653 (869)
..+|.+ .+|+.+.+ .+.+.......|.++++|+.+++.+|.+. ...+.+|.+|++|+.++|. +.+...-...
T Consensus 242 ~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~a 318 (401)
T 4fdw_A 242 QEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGL 318 (401)
T ss_dssp TTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTT
T ss_pred cccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhh
Confidence 233443 45555555 33344444555666666666666665543 3455677778888888877 3466555667
Q ss_pred hhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCC-CCcEEEccCCcc
Q 002896 654 LEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMN-GLLYIDISYNEL 718 (869)
Q Consensus 654 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l 718 (869)
|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|..++ .+..+.+..+.+
T Consensus 319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 777788888888544 656666778888 888888888888777777777764 677777776654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.1e-14 Score=141.08 Aligned_cols=132 Identities=27% Similarity=0.260 Sum_probs=91.7
Q ss_pred CEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCC
Q 002896 565 HVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTN 644 (869)
Q Consensus 565 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 644 (869)
+.+++++|+++ .+|..+ .++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34444444444 223222 245566666666665555555666777777777777777666666777888888888888
Q ss_pred cCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCCCCcc
Q 002896 645 QFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLSDFIP 699 (869)
Q Consensus 645 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 699 (869)
++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8877777677788888888888888877666667788888888888888887655
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=2.8e-14 Score=139.93 Aligned_cols=107 Identities=29% Similarity=0.435 Sum_probs=46.8
Q ss_pred cCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeeccCcccCCCCCCccccccccceeecc
Q 002896 132 MLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELALTSNFLKGSIPPSLGNLTNLAILYLH 211 (869)
Q Consensus 132 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 211 (869)
+|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444444444443 333444444444444444444443333344444444444444444444444444444444444444
Q ss_pred ccCCCCCCCccccCCCCCCEEEccCCcC
Q 002896 212 NNSLSGSIPSEIGNLKSLSSLALGNNKL 239 (869)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l 239 (869)
+|.+++..+..+..+++|++|++++|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4444433333344444455555554444
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=1.8e-13 Score=150.08 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=57.5
Q ss_pred CCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEE
Q 002896 370 LKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLA 449 (869)
Q Consensus 370 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 449 (869)
+..++.+.+.+ .++.....+|.++ +|+.+.+..+ +...-..+|.++ +|+.+.+.+ .+......+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46677777764 3444455666664 6777777655 444444556554 466666664 45555555566666666666
Q ss_pred ccCCCCcccCCccccCCCCCcEEecC
Q 002896 450 LYDNALSGVIPEELGNLVKLTMLTLS 475 (869)
Q Consensus 450 l~~n~l~~~~~~~~~~l~~L~~L~Ls 475 (869)
+.+|.++......|. +.+|+.+.+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred cCCCcceEechhhEe-ecccCEEEeC
Confidence 666655554444444 3455555554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=2.1e-16 Score=156.21 Aligned_cols=151 Identities=22% Similarity=0.233 Sum_probs=100.3
Q ss_pred CCCEEEccCCcccccCCc------ccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCC
Q 002896 563 QLHVIDLSANHIIGKIPS------EIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636 (869)
Q Consensus 563 ~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 636 (869)
.++.++++.+.+.+.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344444444444444443 56666666677776666665 34 5666777777777777776 456666666777
Q ss_pred CeeeCcCCcCCcccchhhhcccccccccccccccCCchh-hhhcCCCCCcEEeCCCCCCCCCcchh----------hhcC
Q 002896 637 HYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIP-SQICNMRSLEMLNLSHNNLSDFIPRC----------FEEM 705 (869)
Q Consensus 637 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l 705 (869)
+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 777777777765 34 57777778888888887765433 56777788888888888777665542 6777
Q ss_pred CCCcEEEccCCcccc
Q 002896 706 NGLLYIDISYNELHG 720 (869)
Q Consensus 706 ~~L~~L~ls~N~l~g 720 (869)
++|++|| +|+++.
T Consensus 174 ~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 174 PNLKKLD--GMPVDV 186 (198)
T ss_dssp SSCSEEC--CGGGTT
T ss_pred CCcEEEC--CcccCH
Confidence 7888776 555543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.4e-14 Score=140.15 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=100.5
Q ss_pred cccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccc
Q 002896 582 IGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLS 661 (869)
Q Consensus 582 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 661 (869)
+..+++|+.|++++|.+... |......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 44455666666666666543 33222233788888888888765 5788888899999999988876556668888999
Q ss_pred cccccccccCCchhh--hhcCCCCCcEEeCCCCCCCCCcch---hhhcCCCCcEEEccCCcccc
Q 002896 662 ELDLSHNFLGKEIPS--QICNMRSLEMLNLSHNNLSDFIPR---CFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 662 ~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~ls~N~l~g 720 (869)
+|++++|.+ +.+|. .+..+++|+.|++++|+++...+. .+..+++|++||+++|....
T Consensus 92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998 44555 788899999999999999864332 48889999999999997654
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=1e-14 Score=139.98 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=99.0
Q ss_pred ccccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCC
Q 002896 612 LEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 691 (869)
Q Consensus 612 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 691 (869)
.+.+++++|.++. +|..+. ++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4678888888874 565553 7899999999999998898999999999999999999988888889999999999999
Q ss_pred CCCCCCcchhhhcCCCCcEEEccCCcccccCCCCccc
Q 002896 692 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIPNSTAF 728 (869)
Q Consensus 692 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~ 728 (869)
|+|++..+..|..+++|++|++++|+++|.++....+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 9999988888999999999999999999998754333
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=3.2e-16 Score=154.95 Aligned_cols=133 Identities=23% Similarity=0.228 Sum_probs=98.5
Q ss_pred CcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCccccccccccccccccccccccCCCCC
Q 002896 557 EIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKL 636 (869)
Q Consensus 557 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 636 (869)
.+..+++|++|++++|++++ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 56667777777777777765 55 6777777777777777776 455666667788888888888876 34 57778888
Q ss_pred CeeeCcCCcCCcccc-hhhhcccccccccccccccCCchhh----------hhcCCCCCcEEeCCCCCCCC
Q 002896 637 HYLNLSTNQFIQEIP-IKLEKLIHLSELDLSHNFLGKEIPS----------QICNMRSLEMLNLSHNNLSD 696 (869)
Q Consensus 637 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~~ 696 (869)
+.|++++|++++..+ ..+..+++|++|++++|.+++.+|. .+..+++|+.|| +|.++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 888888888866433 4677888888888888888777664 378889999887 666654
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=4.6e-14 Score=136.47 Aligned_cols=133 Identities=20% Similarity=0.167 Sum_probs=67.3
Q ss_pred cCCCCCCcEEEccCCCCCCCCCcCcCCCCCCCEEEccCCcccccCCcccccCcccceeeccCccccccCcccccCCcccc
Q 002896 534 WGKCPNLGTFDVSVNNIIGSLPPEIGDSSQLHVIDLSANHIIGKIPSEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLE 613 (869)
Q Consensus 534 ~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 613 (869)
+..+++|+.|++++|+++. +|......++|++|++++|.+++. ..+. .+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~------------------------~l~~L~ 67 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFP------------------------LLRRLK 67 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCC------------------------CCSSCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccc------------------------cCCCCC
Confidence 3445566666666666553 232222222555555555555543 3344 445555
Q ss_pred ccccccccccccccccccCCCCCCeeeCcCCcCCcccch--hhhcccccccccccccccCCchhh----hhcCCCCCcEE
Q 002896 614 YLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPI--KLEKLIHLSELDLSHNFLGKEIPS----QICNMRSLEML 687 (869)
Q Consensus 614 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L 687 (869)
+|++++|.+++..+..+..+++|+.|++++|++. .+|. .+..+++|+.|++++|.++. +|. .+..+++|+.|
T Consensus 68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEE
T ss_pred EEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcccee
Confidence 5555555555433333455555555555555552 2333 45555555555555555542 233 25556666666
Q ss_pred eCCCCCCC
Q 002896 688 NLSHNNLS 695 (869)
Q Consensus 688 ~Ls~N~l~ 695 (869)
|+++|.+.
T Consensus 146 d~~~n~~~ 153 (176)
T 1a9n_A 146 DFQKVKLK 153 (176)
T ss_dssp TTEECCHH
T ss_pred CCCcCCHH
Confidence 66666544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=1.1e-13 Score=133.07 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=95.1
Q ss_pred cccccccccccccccccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCC
Q 002896 613 EYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHN 692 (869)
Q Consensus 613 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 692 (869)
+.+++++|.+. .+|..+. ++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56788888875 5566554 78899999999998888888999999999999999998877777899999999999999
Q ss_pred CCCCCcchhhhcCCCCcEEEccCCcccccCCCC
Q 002896 693 NLSDFIPRCFEEMNGLLYIDISYNELHGPIPNS 725 (869)
Q Consensus 693 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~~ 725 (869)
+|++..+..|..+++|++|++++|++.|.++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 999988888999999999999999999987643
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=1.3e-10 Score=127.90 Aligned_cols=155 Identities=9% Similarity=0.086 Sum_probs=80.6
Q ss_pred ccccCCCC-CCCEEEccCCCCCCCCCCCCCCCccCCccccCccc---CCcccCccccCCCCCCeeecccccccCCCCCcc
Q 002896 244 PLFLGNLT-NLDTLYLRNNSFSSSIPSEIGNLKSLSILELGENR---LNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEI 319 (869)
Q Consensus 244 ~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~---~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l 319 (869)
..+|.+++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|. ++.....+|..+.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34566653 4788877653 554555677777778777776653 44344455666667776666543 332334456
Q ss_pred cCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccE
Q 002896 320 GNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAI 399 (869)
Q Consensus 320 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 399 (869)
..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...-...|. ..+|+.+.+..+-. .....+|..+..++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccce
Confidence 66666666666532 23333445555566666555433 2212222332 23455555543321 122334445555554
Q ss_pred EEccC
Q 002896 400 LYLHS 404 (869)
Q Consensus 400 L~L~~ 404 (869)
.....
T Consensus 210 ~~~~~ 214 (394)
T 4gt6_A 210 ITSDS 214 (394)
T ss_dssp EEECC
T ss_pred ecccc
Confidence 44433
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=4.6e-12 Score=121.33 Aligned_cols=86 Identities=24% Similarity=0.206 Sum_probs=51.3
Q ss_pred CCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCCCCCCCCCccccCCCcCceeec
Q 002896 107 SKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKNQLSGPIPHEVGGLSSLNELAL 186 (869)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (869)
++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 56666666666666555666666666666666666666444445556666666666666665444444555555555555
Q ss_pred cCcccC
Q 002896 187 TSNFLK 192 (869)
Q Consensus 187 ~~n~l~ 192 (869)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555544
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=4.4e-11 Score=131.70 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=81.9
Q ss_pred CCCcccCCC-CCCeEeccCCccccccCCCCcCccccceeeccCCc---CCCCCccccCCCCCCCEEEccCCcCCCCCCCC
Q 002896 315 IPSEIGNLK-SLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNS---LSGSIPSEIGNLKSLSNLDLSENKLSGSIPHS 390 (869)
Q Consensus 315 ~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 390 (869)
-..+|.++. .|+.+.+..+ ++......|.++.+|+.+.+..+. ++..-..+|.+|.+|+.+.+..+ ++.....+
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 344566664 4777777653 555556677777777777776553 33333455666777776666543 33334455
Q ss_pred CCCCCcccEEEccCCccccccChhhhCCCCCCccccCCCcCcccccccccCCCCCCeEEccCCCCcccCCccccCCCCCc
Q 002896 391 LGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGDNKLSNSISHSLGNLTHMTLLALYDNALSGVIPEELGNLVKLT 470 (869)
Q Consensus 391 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 470 (869)
|..+.+|+.+.+..+. .......|..+..|+.+.+..+ +......+|.+ ..|+.+.+..+. .......|..+.+++
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCC
T ss_pred hhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccc
Confidence 6666666666665432 2233445566666666666543 33233333332 345555554332 222333444444444
Q ss_pred EEecC
Q 002896 471 MLTLS 475 (869)
Q Consensus 471 ~L~Ls 475 (869)
.....
T Consensus 209 ~~~~~ 213 (394)
T 4gt6_A 209 TITSD 213 (394)
T ss_dssp EEEEC
T ss_pred eeccc
Confidence 44443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=7.8e-12 Score=120.10 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=56.5
Q ss_pred EEeCCCCCcccccCCcCCCCCCCCcEEeCCCCCCCCCCCCCCCCCCcCCcccCCCccCCCCCCcccCCCCCCCEEEcCCC
Q 002896 86 SINLTNVNQIFGIIPPQIGNISKLKYLDLSSNSFSGTIPPQIGNLSMLKFLYLSANQFSGRIPPQIGHLSYIEALHLFKN 165 (869)
Q Consensus 86 ~l~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n 165 (869)
.+++++.. + +.+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 16 ~l~~~~n~-l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIR-L-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSC-C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCC-C-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444443 3 34454443 56666666666666555566666666666666666665443444555666666666666
Q ss_pred CCCCCCCccccCCCcCceeeccCcccC
Q 002896 166 QLSGPIPHEVGGLSSLNELALTSNFLK 192 (869)
Q Consensus 166 ~l~~~~p~~~~~l~~L~~L~L~~n~l~ 192 (869)
.+++..+..|.++++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555443334555555555555555544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=2.9e-13 Score=146.88 Aligned_cols=158 Identities=23% Similarity=0.256 Sum_probs=99.9
Q ss_pred CCCEEEccCCcccccCCccccc-----CcccceeeccCccccccCccc-ccCCccccccccccccccccccccc-----c
Q 002896 563 QLHVIDLSANHIIGKIPSEIGK-----LSSLIKLILRRNQLFGQLPSE-LGSLIQLEYLDLSSNRLSNSIPRSL-----G 631 (869)
Q Consensus 563 ~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~-----~ 631 (869)
.|+.|++++|.++......+.. .++|+.|+|++|.+....... ...+++|++|+|++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4555555555554322222221 246666666666654332222 2234567777777777765433333 2
Q ss_pred CCCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCc----hhhhhcCCCCCcEEeCCCCCCCCC----cc
Q 002896 632 NLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNLSDF----IP 699 (869)
Q Consensus 632 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p 699 (869)
..++|+.|+|++|.++.. ++..+..+++|++|+|++|.++.. +++.+...++|+.|+|++|.+++. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 456788888888887542 344456777888888888888653 356677778888888888888764 33
Q ss_pred hhhhcCCCCcEEEccCCcccc
Q 002896 700 RCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 700 ~~l~~l~~L~~L~ls~N~l~g 720 (869)
..+...++|++||+++|+++.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhCCCCCEEeccCCCCCH
Confidence 445566888888998888764
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.2e-13 Score=149.94 Aligned_cols=144 Identities=22% Similarity=0.224 Sum_probs=100.1
Q ss_pred CCCCEEEccCCcccccCCccc-ccCcccceeeccCccccccCcccc-----cCCccccccccccccccc----ccccccc
Q 002896 562 SQLHVIDLSANHIIGKIPSEI-GKLSSLIKLILRRNQLFGQLPSEL-----GSLIQLEYLDLSSNRLSN----SIPRSLG 631 (869)
Q Consensus 562 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~----~~~~~~~ 631 (869)
++|++|+|++|.++......+ ..+++|+.|+|++|.+.......+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666666543222222 235567777777777654433332 245778888888888865 2344557
Q ss_pred CCCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCc----hhhhhcCCCCCcEEeCCCCCCCCCcchhhh
Q 002896 632 NLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKE----IPSQICNMRSLEMLNLSHNNLSDFIPRCFE 703 (869)
Q Consensus 632 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 703 (869)
.+++|++|||++|++... ++..+...++|++|+|++|.|+.. ++..+...++|++|||++|.|++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 788899999999998653 355677788999999999999764 445566789999999999999887666665
Q ss_pred cC
Q 002896 704 EM 705 (869)
Q Consensus 704 ~l 705 (869)
.+
T Consensus 261 ~~ 262 (372)
T 3un9_A 261 DL 262 (372)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=5.3e-12 Score=136.65 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=86.9
Q ss_pred ccccccc-cccccccccccCCCCCCeeeCcC-CcCCcccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCC
Q 002896 614 YLDLSSN-RLSNSIPRSLGNLVKLHYLNLST-NQFIQEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSH 691 (869)
Q Consensus 614 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 691 (869)
.++++++ .+++ +|. +..+++|+.|+|++ |++.+..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 6763 666 88888888888885 888877778888888888888888888888888888888888888888
Q ss_pred CCCCCCcchhhhcCCCCcEEEccCCcccccCC
Q 002896 692 NNLSDFIPRCFEEMNGLLYIDISYNELHGPIP 723 (869)
Q Consensus 692 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p 723 (869)
|+|++..+..|..++ |+.|++++|+|.|.|+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 888887777777665 8888888888888776
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=2.4e-11 Score=131.47 Aligned_cols=103 Identities=22% Similarity=0.176 Sum_probs=59.8
Q ss_pred EEEccCC-cccccCCcccccCcccceeeccC-ccccccCcccccCCccccccccccccccccccccccCCCCCCeeeCcC
Q 002896 566 VIDLSAN-HIIGKIPSEIGKLSSLIKLILRR-NQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLST 643 (869)
Q Consensus 566 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 643 (869)
.++++++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 565 3555 66666666666664 666655555566666666666666666655555556666666666666
Q ss_pred CcCCcccchhhhcccccccccccccccC
Q 002896 644 NQFIQEIPIKLEKLIHLSELDLSHNFLG 671 (869)
Q Consensus 644 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 671 (869)
|++++..+..+..+. |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 665554444444433 555555555553
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=6.3e-09 Score=113.82 Aligned_cols=127 Identities=5% Similarity=0.006 Sum_probs=63.7
Q ss_pred cccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCccccceeeccCCcCCCCCccccCCCCCC
Q 002896 294 SLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNLAAFYLYKNSLSGSIPSEIGNLKSL 373 (869)
Q Consensus 294 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 373 (869)
++....+|+.+.+.. .++..-..+|.+|.+|+.+++..+ ++......|.++ +|+.+.+..+ +.......|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 455566777777754 344444566777888888877643 554445556655 4666555432 322222334433 56
Q ss_pred CEEEccCCcCCCCCCCCCCCCCcccEEEccCCccccccChhhhCCCCCCccccCC
Q 002896 374 SNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTLLGSIPREIGNLKSLFELQLGD 428 (869)
Q Consensus 374 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 428 (869)
+.+++..+ +.......|.++ +++.+.+..+ ++......+..+..++.+.+..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 66666543 221222334333 3444444332 2222233444555555544443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.11 E-value=1.2e-08 Score=111.53 Aligned_cols=130 Identities=9% Similarity=0.015 Sum_probs=82.9
Q ss_pred CCCCCccCCccccCcccCCcccCccccCCCCCCeeecccccccCCCCCcccCCCCCCeEeccCCccccccCCCCcCcccc
Q 002896 270 EIGNLKSLSILELGENRLNGSIPLSLGNLTNLDTLYLYTNSLSGSIPSEIGNLKSLSGLELADNELSSSIPHYLGNLTNL 349 (869)
Q Consensus 270 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 349 (869)
++....+|+.+.+.. .++.....+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +.......|.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 456667788888865 355455667888999999998754 554555667776 6777777643 44344445554 478
Q ss_pred ceeeccCCcCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEccCCcc
Q 002896 350 AAFYLYKNSLSGSIPSEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLHSNTL 407 (869)
Q Consensus 350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 407 (869)
+.+.+..+- .......|.++ +++.+.+..+ ++......|..+..++.+.+..+..
T Consensus 116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~ 170 (379)
T 4h09_A 116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNK 170 (379)
T ss_dssp SEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCS
T ss_pred ccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccc
Confidence 888886542 22333445554 5676666543 3334456777888888887766543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=8.7e-10 Score=118.40 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=55.8
Q ss_pred CCCCCCeeeCcCCcCCcccchhhh---cccccccccccccccCCch----hhhhcCCCCCcEEeCCCCCCCCCcchhhhc
Q 002896 632 NLVKLHYLNLSTNQFIQEIPIKLE---KLIHLSELDLSHNFLGKEI----PSQICNMRSLEMLNLSHNNLSDFIPRCFEE 704 (869)
Q Consensus 632 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 704 (869)
.+++|+.|+|++|.+....+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467888888888877654444443 4677888888888876643 333455678888888888777654444443
Q ss_pred -CCCCcEEEccCCc
Q 002896 705 -MNGLLYIDISYNE 717 (869)
Q Consensus 705 -l~~L~~L~ls~N~ 717 (869)
+ ...+++++|+
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=2.4e-09 Score=114.99 Aligned_cols=138 Identities=17% Similarity=0.234 Sum_probs=92.1
Q ss_pred cccccCcccceeeccCccccccCcccccCCcccccccccccccccccccccc--CCCCCCeeeCcC--CcCCcc-----c
Q 002896 580 SEIGKLSSLIKLILRRNQLFGQLPSELGSLIQLEYLDLSSNRLSNSIPRSLG--NLVKLHYLNLST--NQFIQE-----I 650 (869)
Q Consensus 580 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~ 650 (869)
..+..+|+|+.|++++|.-.. ++. + .+++|+.|+|..|.+.......+. .+++|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 334556777777776663111 222 2 367788888877776554333333 678888888753 221111 1
Q ss_pred chhh--hcccccccccccccccCCchhhhhc---CCCCCcEEeCCCCCCCCC----cchhhhcCCCCcEEEccCCcccc
Q 002896 651 PIKL--EKLIHLSELDLSHNFLGKEIPSQIC---NMRSLEMLNLSHNNLSDF----IPRCFEEMNGLLYIDISYNELHG 720 (869)
Q Consensus 651 p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g 720 (869)
...+ ..+++|++|+|++|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1122 3578999999999999766555554 578999999999999875 34445667999999999998763
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=2.9e-08 Score=96.08 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=75.1
Q ss_pred cCCccccccccccc-cccc----cccccccCCCCCCeeeCcCCcCCcc----cchhhhcccccccccccccccCCc----
Q 002896 607 GSLIQLEYLDLSSN-RLSN----SIPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHNFLGKE---- 673 (869)
Q Consensus 607 ~~l~~L~~L~Ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---- 673 (869)
...++|++|+|++| .+.. .+...+...++|++|+|++|++... +...+...++|++|+|++|.|+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34555666666665 5543 1233455567777777877777543 334455557788888888887654
Q ss_pred hhhhhcCCCCCcEEeC--CCCCCCCC----cchhhhcCCCCcEEEccCCccc
Q 002896 674 IPSQICNMRSLEMLNL--SHNNLSDF----IPRCFEEMNGLLYIDISYNELH 719 (869)
Q Consensus 674 ~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 719 (869)
+.+.+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566677788888888 77888765 3345556688888998888774
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=2.9e-08 Score=100.80 Aligned_cols=80 Identities=33% Similarity=0.388 Sum_probs=43.4
Q ss_pred cCCCCCCeeeCcCCcCCc--ccchhhhcccccccccccccccCCchhhhhcCCC--CCcEEeCCCCCCCCCcc-------
Q 002896 631 GNLVKLHYLNLSTNQFIQ--EIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMR--SLEMLNLSHNNLSDFIP------- 699 (869)
Q Consensus 631 ~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p------- 699 (869)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. +.+..++ +|++|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 445666666666666665 3345555666666666666666544 1222222 56666666666655433
Q ss_pred hhhhcCCCCcEEE
Q 002896 700 RCFEEMNGLLYID 712 (869)
Q Consensus 700 ~~l~~l~~L~~L~ 712 (869)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2244555555554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=4.4e-08 Score=94.74 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred cCCcccccccccccccccc----ccccccCCCCCCeeeCcCCcCCcc----cchhhhcccccccccc--cccccCCc---
Q 002896 607 GSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDL--SHNFLGKE--- 673 (869)
Q Consensus 607 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~--- 673 (869)
...++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...++|++|+| ++|.++..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3445566666666665432 233445556777777777777643 3445566677788888 77777654
Q ss_pred -hhhhhcCCCCCcEEeCCCCCCC
Q 002896 674 -IPSQICNMRSLEMLNLSHNNLS 695 (869)
Q Consensus 674 -~p~~l~~l~~L~~L~Ls~N~l~ 695 (869)
+.+.+...++|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 3455566688888888888765
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=8e-08 Score=97.52 Aligned_cols=105 Identities=26% Similarity=0.241 Sum_probs=71.9
Q ss_pred cccCcccce--eeccCccc---cccCcccccCCccccccccccccccc--cccccccCCCCCCeeeCcCCcCCcccchhh
Q 002896 582 IGKLSSLIK--LILRRNQL---FGQLPSELGSLIQLEYLDLSSNRLSN--SIPRSLGNLVKLHYLNLSTNQFIQEIPIKL 654 (869)
Q Consensus 582 l~~l~~L~~--L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 654 (869)
+...+.|+. ++++.|.. .+.++....++++|++|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 344455554 55666632 22222222467788888888888887 4456677888899999999988765 334
Q ss_pred hccc--ccccccccccccCCchh-------hhhcCCCCCcEEe
Q 002896 655 EKLI--HLSELDLSHNFLGKEIP-------SQICNMRSLEMLN 688 (869)
Q Consensus 655 ~~l~--~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~ 688 (869)
..+. .|++|+|++|.+.+.+| ..+..+|+|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4444 88899999999887554 4577889999886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.5e-06 Score=79.05 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=57.3
Q ss_pred ccccccccccccccccccccccCCCCCCeeeCcCCc-CCcccchhhhcc----cccccccccccc-cCCchhhhhcCCCC
Q 002896 610 IQLEYLDLSSNRLSNSIPRSLGNLVKLHYLNLSTNQ-FIQEIPIKLEKL----IHLSELDLSHNF-LGKEIPSQICNMRS 683 (869)
Q Consensus 610 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 683 (869)
..|+.||+++|.++...-..+..+++|+.|+|++|. ++..--..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777766555566777888888888875 554444445543 367788887774 76665566777777
Q ss_pred CcEEeCCCCC
Q 002896 684 LEMLNLSHNN 693 (869)
Q Consensus 684 L~~L~Ls~N~ 693 (869)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=5.1e-06 Score=77.94 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=74.5
Q ss_pred cccccCCCCCCeeeCcCCcCCcccchhhhcccccccccccccc-cCCchhhhhcCC----CCCcEEeCCCCC-CCCCcch
Q 002896 627 PRSLGNLVKLHYLNLSTNQFIQEIPIKLEKLIHLSELDLSHNF-LGKEIPSQICNM----RSLEMLNLSHNN-LSDFIPR 700 (869)
Q Consensus 627 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~ 700 (869)
|.....-..|+.||++++.++..--..+.++++|+.|+|++|. ++...-..+..+ ++|++|+|++|. ++..--.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333333579999999999887766778899999999999995 877766777775 489999999985 8876667
Q ss_pred hhhcCCCCcEEEccCCc
Q 002896 701 CFEEMNGLLYIDISYNE 717 (869)
Q Consensus 701 ~l~~l~~L~~L~ls~N~ 717 (869)
.+..+++|++|++++++
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 78889999999999886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=7.2e-05 Score=71.52 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=63.7
Q ss_pred CCccccccccccc-cccc----cccccccCCCCCCeeeCcCCcCCc----ccchhhhcccccccccccccccCCc----h
Q 002896 608 SLIQLEYLDLSSN-RLSN----SIPRSLGNLVKLHYLNLSTNQFIQ----EIPIKLEKLIHLSELDLSHNFLGKE----I 674 (869)
Q Consensus 608 ~l~~L~~L~Ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~ 674 (869)
+-+.|++|+|++| .+.. .+.+.+..-+.|+.|+|++|++.. .+...+..-+.|++|+|++|.|+.. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3345566666654 4432 233445556677777777777753 2334455556777777777777544 3
Q ss_pred hhhhcCCCCCcEEeCCCCC---CCCC----cchhhhcCCCCcEEEccCCc
Q 002896 675 PSQICNMRSLEMLNLSHNN---LSDF----IPRCFEEMNGLLYIDISYNE 717 (869)
Q Consensus 675 p~~l~~l~~L~~L~Ls~N~---l~~~----~p~~l~~l~~L~~L~ls~N~ 717 (869)
-+.+..-+.|++|+|++|. +... +...+..-+.|..|++++|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3455566677777777553 3321 33445555677777776553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00024 Score=63.56 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=48.7
Q ss_pred cccccccccC-CchhhhhcCCCCCcEEeCCCCCCCCCcchhhhcCCCCcEEEccCCcccccCCC
Q 002896 662 ELDLSHNFLG-KEIPSQICNMRSLEMLNLSHNNLSDFIPRCFEEMNGLLYIDISYNELHGPIPN 724 (869)
Q Consensus 662 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~~p~ 724 (869)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+.+.+..|..+++|+.|++++|++.|.|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 4666666664 2555432 24689999999999999889999999999999999999998863
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00013 Score=69.65 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=51.1
Q ss_pred ccCCcccccccccccccccc----ccccccCCCCCCeeeCcCCcCCcc----cchhhhccccccccccccc---ccCC--
Q 002896 606 LGSLIQLEYLDLSSNRLSNS----IPRSLGNLVKLHYLNLSTNQFIQE----IPIKLEKLIHLSELDLSHN---FLGK-- 672 (869)
Q Consensus 606 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N---~l~~-- 672 (869)
+..-+.|+.|+|++|.+... +.+.+..-++|+.|+|++|.|... +...+..-+.|++|+|++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 33445556666666655432 223344556677777777776533 2233444456777777654 3332
Q ss_pred --chhhhhcCCCCCcEEeCCCCCC
Q 002896 673 --EIPSQICNMRSLEMLNLSHNNL 694 (869)
Q Consensus 673 --~~p~~l~~l~~L~~L~Ls~N~l 694 (869)
.+.+.+..-+.|+.|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 2445666777888888877654
No 164
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=96.09 E-value=0.00032 Score=66.18 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=46.4
Q ss_pred ccccccCcCHHHHHHHhcCCCcccccch--hh-------------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896 813 VLTFEGKIVYEEIIRQRMVLMMSTALEK--VD-------------KEVYTKLIYLLEKSLQ-----SRNFIRHS 866 (869)
Q Consensus 813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~--~~-------------~~i~~~i~~~~~~s~~-----s~~fl~~~ 866 (869)
.+.||+||||+..|++|+..++.+.||+ .| +.|+++|.++|++|++ |++|++.+
T Consensus 33 ~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 33 NVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp SCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred CccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 3689999999999999998889999998 33 5689999999999998 88988643
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.92 E-value=0.0065 Score=54.07 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=35.5
Q ss_pred eeeCcCCcCC-cccchhhhcccccccccccccccCCchhhhhcCCCCCcEEeCCCCCCC
Q 002896 638 YLNLSTNQFI-QEIPIKLEKLIHLSELDLSHNFLGKEIPSQICNMRSLEMLNLSHNNLS 695 (869)
Q Consensus 638 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 695 (869)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4556666654 24443322 24667777777776666667777777777777777775
No 166
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=95.41 E-value=0.00074 Score=61.82 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=45.4
Q ss_pred cccccCcCHHHHHHHhcCCCcccccchh--h-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896 814 LTFEGKIVYEEIIRQRMVLMMSTALEKV--D-------------KEVYTKLIYLLEKSLQ-----SRNFIRH 865 (869)
Q Consensus 814 ~~~~~~isy~~~~~a~~~~~~~~~Le~~--~-------------~~i~~~i~~~~~~s~~-----s~~fl~~ 865 (869)
+.||+||||+..|.+|+...+.+.||+. | +.+.++|.++|++|++ |++|++.
T Consensus 4 ~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S 75 (149)
T 1fyx_A 4 IXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKS 75 (149)
T ss_dssp CCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHH
T ss_pred ccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhcc
Confidence 6799999999999999987789999986 3 5688999999999998 8888764
No 167
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=95.07 E-value=0.0012 Score=60.94 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=35.7
Q ss_pred ccccCcCHHHHHHHhcCCC----------cc-cccch-hh-------------hhhhhhhhhHHHHhcc-----ccccc-
Q 002896 815 TFEGKIVYEEIIRQRMVLM----------MS-TALEK-VD-------------KEVYTKLIYLLEKSLQ-----SRNFI- 863 (869)
Q Consensus 815 ~~~~~isy~~~~~a~~~~~----------~~-~~Le~-~~-------------~~i~~~i~~~~~~s~~-----s~~fl- 863 (869)
.||+||||+..|.+|+..+ +. +.||+ .| +.|+++|.++|++|++ |++|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 6999999999988877643 24 45883 33 6789999999999999 99997
Q ss_pred cc
Q 002896 864 RH 865 (869)
Q Consensus 864 ~~ 865 (869)
+.
T Consensus 82 ~S 83 (159)
T 1t3g_A 82 RR 83 (159)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 168
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=94.90 E-value=0.0012 Score=61.18 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=44.5
Q ss_pred ccccccCcCHHHHHHHhcCCCcccccchhh---------------hhhhhhhhhHHH-Hhcc-----ccccccc
Q 002896 813 VLTFEGKIVYEEIIRQRMVLMMSTALEKVD---------------KEVYTKLIYLLE-KSLQ-----SRNFIRH 865 (869)
Q Consensus 813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~~~---------------~~i~~~i~~~~~-~s~~-----s~~fl~~ 865 (869)
.+.||+||||+..|++|+. .+.+.||+.+ +.|.++|.++|+ +|++ |++|++.
T Consensus 14 ~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S 86 (160)
T 2js7_A 14 PERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQS 86 (160)
T ss_dssp TTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHS
T ss_pred CcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcC
Confidence 4689999999999999998 7899999842 568899999999 6998 9998864
No 169
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=94.59 E-value=0.00071 Score=61.55 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=43.4
Q ss_pred ccccccCcCHHHHHHHhcCCCcccccchh--h-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896 813 VLTFEGKIVYEEIIRQRMVLMMSTALEKV--D-------------KEVYTKLIYLLEKSLQ-----SRNFIRH 865 (869)
Q Consensus 813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~~--~-------------~~i~~~i~~~~~~s~~-----s~~fl~~ 865 (869)
.+.||+||||+..|+.|+. .+.+.||+. + +.|.++|.++|++|++ |++|++.
T Consensus 8 ~k~YDvFISy~~~D~~~v~-~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 8 SKDYDVCVCHSEEDLVAAQ-DLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp SSSEEEEEECCGGGHHHHH-HHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCcceEEEeCChhhHHHHH-HHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 3689999999999999985 899999984 3 5688899999999998 8888864
No 170
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=82.93 E-value=0.13 Score=48.68 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=39.4
Q ss_pred ccccccCcCHHHHHHHh-cCCCcccccchhh-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896 813 VLTFEGKIVYEEIIRQR-MVLMMSTALEKVD-------------KEVYTKLIYLLEKSLQ-----SRNFIRH 865 (869)
Q Consensus 813 ~~~~~~~isy~~~~~a~-~~~~~~~~Le~~~-------------~~i~~~i~~~~~~s~~-----s~~fl~~ 865 (869)
.+.||+||||+..|..+ ..-++.++|+..| +.|..+|..+||+|+. |++|+..
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S 104 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADS 104 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGC
T ss_pred CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccC
Confidence 47899999998777422 1224666776665 5688899999999998 8888764
No 171
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.26 E-value=1.9 Score=29.27 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=2.7
Q ss_pred ehHHHHH
Q 002896 769 IVFPLLG 775 (869)
Q Consensus 769 i~~~~~~ 775 (869)
|+.++++
T Consensus 13 IA~gVVg 19 (44)
T 2ks1_B 13 IATGMVG 19 (44)
T ss_dssp STHHHHH
T ss_pred EEeehhH
Confidence 3344433
No 172
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.52 E-value=2.3 Score=28.80 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.0
Q ss_pred HHHHHhhc
Q 002896 786 LFFIFRRR 793 (869)
Q Consensus 786 ~~~~~~~~ 793 (869)
++++.|+|
T Consensus 30 ~~~~~RRR 37 (44)
T 2l2t_A 30 FAVYVRRK 37 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33333333
No 173
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=72.00 E-value=0.16 Score=47.15 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=31.1
Q ss_pred ccccccCcCHHHHHH--HhcCCCcccccchhh-------------hhhhhhhhhHHHHhcc-----ccccccc
Q 002896 813 VLTFEGKIVYEEIIR--QRMVLMMSTALEKVD-------------KEVYTKLIYLLEKSLQ-----SRNFIRH 865 (869)
Q Consensus 813 ~~~~~~~isy~~~~~--a~~~~~~~~~Le~~~-------------~~i~~~i~~~~~~s~~-----s~~fl~~ 865 (869)
.+.||+||||+..|. .++ -++.++|+..| +.|..+|.++||+|+. |++|+..
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv-~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S 77 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFI-SFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAAS 77 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHH-HHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTC
T ss_pred CCCCeEEEECcCcccChHHH-HHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCC
Confidence 478999999987764 222 25666666665 5688899999999998 8888764
No 174
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=63.52 E-value=0.2 Score=45.83 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=38.4
Q ss_pred ccccccCcCHHHHHHHhcCCCcccccchhh-------------hhhhhhhhhHHHHhcc-----cccccccc
Q 002896 813 VLTFEGKIVYEEIIRQRMVLMMSTALEKVD-------------KEVYTKLIYLLEKSLQ-----SRNFIRHS 866 (869)
Q Consensus 813 ~~~~~~~isy~~~~~a~~~~~~~~~Le~~~-------------~~i~~~i~~~~~~s~~-----s~~fl~~~ 866 (869)
.+.||.||||+..|+.+..-.+.+.|+..| +.+.++|.+.|++|+. |++|+...
T Consensus 18 ~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~ 89 (154)
T 3h16_A 18 APPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKE 89 (154)
T ss_dssp CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTC
T ss_pred CCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcCh
Confidence 478999999988775322224566666665 4467788889988887 88877653
No 175
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=58.80 E-value=5.4 Score=27.07 Aligned_cols=13 Identities=31% Similarity=0.059 Sum_probs=5.5
Q ss_pred eEEEehHHHHHHH
Q 002896 765 IWVVIVFPLLGTV 777 (869)
Q Consensus 765 ~~~~i~~~~~~~~ 777 (869)
+...++.++++++
T Consensus 13 IA~gVVgGv~~~~ 25 (44)
T 2ks1_B 13 IATGMVGALLLLL 25 (44)
T ss_dssp STHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 3344444444443
No 176
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.87 E-value=66 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=18.1
Q ss_pred cccCCCCCCCEEEccCCcCCCCCCCCCCCCCcccEEEcc
Q 002896 365 SEIGNLKSLSNLDLSENKLSGSIPHSLGNLTNLAILYLH 403 (869)
Q Consensus 365 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 403 (869)
..|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44555555555555432 222333445555555555554
No 177
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.80 E-value=25 Score=23.77 Aligned_cols=7 Identities=0% Similarity=-0.449 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 002896 784 IALFFIF 790 (869)
Q Consensus 784 ~~~~~~~ 790 (869)
.+++..+
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3333333
No 178
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.22 E-value=99 Score=25.17 Aligned_cols=18 Identities=6% Similarity=-0.071 Sum_probs=8.5
Q ss_pred cccccccCCCCCCeEEcc
Q 002896 434 SISHSLGNLTHMTLLALY 451 (869)
Q Consensus 434 ~~~~~l~~l~~L~~L~l~ 451 (869)
+...+|.+|.+|+.+.+-
T Consensus 11 I~~~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQ 28 (100)
T ss_dssp SCSCTTTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcC
Confidence 334444455555555444
No 179
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=26.98 E-value=84 Score=19.62 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.9
Q ss_pred HHHHHHHhh
Q 002896 784 IALFFIFRR 792 (869)
Q Consensus 784 ~~~~~~~~~ 792 (869)
...|.|+|-
T Consensus 24 g~tflywrg 32 (40)
T 2l9u_A 24 GGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHH
T ss_pred CceeEEEcc
Confidence 334444443
Done!