Query 002898
Match_columns 869
No_of_seqs 264 out of 1622
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 13:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12902 secA preprotein trans 100.0 4E-214 9E-219 1859.1 73.9 784 1-868 84-895 (939)
2 CHL00122 secA preprotein trans 100.0 3E-204 7E-209 1780.2 73.3 759 1-868 75-835 (870)
3 PRK12901 secA preprotein trans 100.0 5E-204 1E-208 1785.7 66.6 663 1-868 168-985 (1112)
4 PRK12903 secA preprotein trans 100.0 1E-203 3E-208 1764.2 69.7 666 1-868 77-746 (925)
5 PRK13103 secA preprotein trans 100.0 1E-200 3E-205 1756.4 71.2 698 1-868 81-797 (913)
6 PRK13107 preprotein translocas 100.0 2E-196 4E-201 1719.8 70.8 698 1-868 81-797 (908)
7 PRK13104 secA preprotein trans 100.0 4E-195 9E-200 1713.4 72.9 699 1-868 81-793 (896)
8 PRK12904 preprotein translocas 100.0 5E-194 1E-198 1703.1 74.0 697 1-868 80-777 (830)
9 PRK12900 secA preprotein trans 100.0 5E-191 1E-195 1677.9 67.4 661 1-868 137-909 (1025)
10 PRK12326 preprotein translocas 100.0 5E-191 1E-195 1642.8 64.9 608 1-868 77-686 (764)
11 COG0653 SecA Preprotein transl 100.0 1E-189 3E-194 1649.7 55.4 669 1-868 79-748 (822)
12 PRK12906 secA preprotein trans 100.0 2E-186 4E-191 1633.9 70.2 666 1-868 79-758 (796)
13 PRK12899 secA preprotein trans 100.0 7E-180 2E-184 1579.9 72.0 667 1-868 93-896 (970)
14 TIGR00963 secA preprotein tran 100.0 7E-179 2E-183 1558.1 71.3 666 1-868 55-724 (745)
15 TIGR03714 secA2 accessory Sec 100.0 5E-171 1E-175 1499.3 72.9 660 1-868 69-740 (762)
16 PRK09200 preprotein translocas 100.0 7E-171 1E-175 1509.9 70.9 661 1-868 77-743 (790)
17 PRK12898 secA preprotein trans 100.0 3E-145 6E-150 1269.0 54.8 524 1-662 102-647 (656)
18 PF07517 SecA_DEAD: SecA DEAD- 100.0 1E-63 2.2E-68 532.8 17.0 191 1-306 76-266 (266)
19 PF07516 SecA_SW: SecA Wing an 100.0 1.1E-35 2.4E-40 309.3 22.0 180 625-868 1-180 (214)
20 KOG0331 ATP-dependent RNA heli 100.0 7E-32 1.5E-36 307.3 27.0 281 2-420 113-408 (519)
21 KOG0333 U5 snRNP-like RNA heli 100.0 7.7E-29 1.7E-33 276.1 28.8 299 1-420 266-584 (673)
22 COG0513 SrmB Superfamily II DN 100.0 1.3E-28 2.9E-33 286.3 29.5 276 2-420 51-340 (513)
23 PF01043 SecA_PP_bind: SecA pr 100.0 5.3E-30 1.2E-34 241.4 11.6 109 154-262 3-113 (113)
24 PTZ00110 helicase; Provisional 100.0 2.2E-27 4.7E-32 278.1 31.7 280 2-420 152-444 (545)
25 KOG0330 ATP-dependent RNA heli 100.0 1E-27 2.3E-32 260.1 25.3 277 1-420 82-367 (476)
26 PRK04837 ATP-dependent RNA hel 100.0 1.4E-26 3E-31 263.0 31.6 278 2-420 30-322 (423)
27 PRK10590 ATP-dependent RNA hel 100.0 2.4E-26 5.3E-31 263.8 32.5 275 2-420 23-312 (456)
28 PLN00206 DEAD-box ATP-dependen 100.0 4.3E-26 9.3E-31 265.8 31.6 276 2-420 143-435 (518)
29 PRK04537 ATP-dependent RNA hel 100.0 4.8E-26 1E-30 268.1 32.1 278 2-420 31-324 (572)
30 PRK11634 ATP-dependent RNA hel 99.9 1.6E-25 3.5E-30 265.8 33.5 275 2-420 28-312 (629)
31 PRK11776 ATP-dependent RNA hel 99.9 1.6E-25 3.6E-30 256.9 32.3 274 2-420 26-309 (460)
32 PRK11192 ATP-dependent RNA hel 99.9 2.6E-25 5.5E-30 253.2 31.7 273 2-420 23-312 (434)
33 PRK01297 ATP-dependent RNA hel 99.9 3E-24 6.5E-29 247.6 33.2 278 2-420 109-402 (475)
34 KOG0340 ATP-dependent RNA heli 99.9 2.3E-24 5E-29 232.0 25.4 281 2-420 29-321 (442)
35 KOG0345 ATP-dependent RNA heli 99.9 1.7E-24 3.8E-29 239.5 24.9 277 3-420 29-324 (567)
36 KOG0342 ATP-dependent RNA heli 99.9 1.3E-23 2.8E-28 234.0 30.6 280 4-420 106-397 (543)
37 TIGR00614 recQ_fam ATP-depende 99.9 4.7E-23 1E-27 237.6 34.0 269 2-420 11-293 (470)
38 KOG0343 RNA Helicase [RNA proc 99.9 1.1E-23 2.5E-28 235.9 27.0 279 2-420 91-382 (758)
39 KOG0335 ATP-dependent RNA heli 99.9 7.8E-24 1.7E-28 238.5 24.7 283 2-420 96-404 (482)
40 KOG0336 ATP-dependent RNA heli 99.9 3.1E-24 6.7E-29 233.5 19.9 277 2-420 242-532 (629)
41 KOG0338 ATP-dependent RNA heli 99.9 3E-23 6.5E-28 231.0 25.2 281 2-420 203-493 (691)
42 TIGR03817 DECH_helic helicase/ 99.9 5.7E-23 1.2E-27 248.3 29.5 129 2-138 36-170 (742)
43 PTZ00424 helicase 45; Provisio 99.9 2.3E-22 5E-27 225.7 31.3 126 2-138 50-183 (401)
44 PRK11057 ATP-dependent DNA hel 99.9 3.3E-22 7.2E-27 237.3 33.8 266 2-420 25-303 (607)
45 KOG0341 DEAD-box protein abstr 99.9 4.8E-24 1E-28 230.7 15.2 276 1-420 191-488 (610)
46 KOG0347 RNA helicase [RNA proc 99.9 1.7E-23 3.7E-28 234.5 18.2 358 1-626 202-590 (731)
47 KOG0339 ATP-dependent RNA heli 99.9 3E-22 6.5E-27 222.7 23.7 279 2-420 245-535 (731)
48 PRK10917 ATP-dependent DNA hel 99.9 1.2E-21 2.6E-26 235.3 29.6 121 2-137 261-395 (681)
49 TIGR01389 recQ ATP-dependent D 99.9 3.2E-21 6.9E-26 228.3 31.8 263 3-420 14-291 (591)
50 PLN03137 ATP-dependent DNA hel 99.9 1.5E-21 3.3E-26 237.8 29.3 269 3-420 461-747 (1195)
51 KOG0334 RNA helicase [RNA proc 99.9 7.8E-22 1.7E-26 235.4 24.4 281 2-420 387-680 (997)
52 TIGR00580 mfd transcription-re 99.9 3.4E-21 7.4E-26 236.2 28.7 121 2-137 451-585 (926)
53 PRK13767 ATP-dependent helicas 99.9 1.3E-20 2.9E-25 231.7 32.9 128 2-138 32-185 (876)
54 KOG0328 Predicted ATP-dependen 99.9 3.3E-21 7.2E-26 202.5 21.6 275 2-420 49-333 (400)
55 TIGR00643 recG ATP-dependent D 99.9 2E-20 4.3E-25 223.1 29.6 121 2-137 235-369 (630)
56 PRK10689 transcription-repair 99.9 3.8E-20 8.2E-25 231.3 29.8 261 2-420 600-878 (1147)
57 PRK02362 ski2-like helicase; P 99.8 1.4E-18 2.9E-23 210.9 34.4 130 2-144 23-155 (737)
58 KOG0348 ATP-dependent RNA heli 99.8 3E-19 6.5E-24 200.3 23.1 131 2-143 159-304 (708)
59 TIGR02621 cas3_GSU0051 CRISPR- 99.8 7.7E-19 1.7E-23 211.4 28.1 279 2-420 15-353 (844)
60 PRK00254 ski2-like helicase; P 99.8 1.2E-18 2.7E-23 210.7 29.2 125 2-138 23-151 (720)
61 PHA02558 uvsW UvsW helicase; P 99.8 5.7E-19 1.2E-23 205.5 25.1 293 2-420 114-412 (501)
62 PRK01172 ski2-like helicase; P 99.8 1.1E-18 2.4E-23 209.7 28.2 129 2-143 22-152 (674)
63 PRK14701 reverse gyrase; Provi 99.8 7.1E-19 1.5E-23 224.9 26.9 125 2-138 79-213 (1638)
64 KOG4284 DEAD box protein [Tran 99.8 5E-19 1.1E-23 201.3 15.4 282 2-420 47-339 (980)
65 KOG0326 ATP-dependent RNA heli 99.8 1.6E-18 3.5E-23 184.9 17.0 274 2-420 107-389 (459)
66 PRK09401 reverse gyrase; Revie 99.8 2.9E-17 6.2E-22 206.1 29.3 125 2-138 80-214 (1176)
67 TIGR01587 cas3_core CRISPR-ass 99.8 3.2E-17 7E-22 181.9 24.6 74 346-420 215-295 (358)
68 KOG0346 RNA helicase [RNA proc 99.8 3.3E-16 7.1E-21 173.1 31.8 269 2-413 41-328 (569)
69 TIGR01054 rgy reverse gyrase. 99.8 1.8E-16 4E-21 199.1 30.6 123 2-138 78-212 (1171)
70 PRK09751 putative ATP-dependen 99.8 1.3E-16 2.8E-21 201.7 28.2 109 21-138 2-137 (1490)
71 PRK13766 Hef nuclease; Provisi 99.8 2.1E-16 4.6E-21 192.7 28.5 125 3-138 16-144 (773)
72 PHA02653 RNA helicase NPH-II; 99.7 2E-16 4.4E-21 188.9 27.6 119 5-140 167-306 (675)
73 KOG0350 DEAD-box ATP-dependent 99.7 1.2E-16 2.7E-21 178.6 23.5 129 2-141 159-310 (620)
74 TIGR01970 DEAH_box_HrpB ATP-de 99.7 2.3E-16 5E-21 192.1 27.6 119 7-140 9-128 (819)
75 KOG0344 ATP-dependent RNA heli 99.7 6.5E-17 1.4E-21 184.3 20.1 280 2-420 158-455 (593)
76 PRK11664 ATP-dependent RNA hel 99.7 1.8E-16 3.8E-21 193.3 24.2 116 7-137 12-128 (812)
77 KOG0332 ATP-dependent RNA heli 99.7 2.6E-16 5.7E-21 171.1 21.0 278 2-420 112-397 (477)
78 TIGR03158 cas3_cyano CRISPR-as 99.7 1.4E-15 3E-20 170.2 27.5 123 7-137 2-157 (357)
79 KOG0327 Translation initiation 99.7 1.6E-16 3.5E-21 173.8 18.8 275 2-420 48-330 (397)
80 KOG0337 ATP-dependent RNA heli 99.7 2.2E-16 4.7E-21 173.8 15.2 279 2-424 43-332 (529)
81 COG1201 Lhr Lhr-like helicases 99.7 5.7E-15 1.2E-19 177.5 25.6 279 2-419 22-320 (814)
82 PRK09694 helicase Cas3; Provis 99.6 7.3E-14 1.6E-18 170.9 28.8 82 340-421 547-639 (878)
83 COG1202 Superfamily II helicas 99.6 2.7E-14 5.9E-19 161.9 23.0 271 4-420 218-507 (830)
84 COG1200 RecG RecG-like helicas 99.6 4.6E-14 9.9E-19 164.8 20.5 243 19-420 287-550 (677)
85 TIGR00603 rad25 DNA repair hel 99.6 1.5E-13 3.2E-18 164.6 23.3 83 332-420 475-559 (732)
86 PRK11131 ATP-dependent RNA hel 99.6 7.3E-14 1.6E-18 174.5 20.7 83 336-420 268-354 (1294)
87 COG0514 RecQ Superfamily II DN 99.6 1.4E-12 3.1E-17 152.3 29.9 263 5-420 20-297 (590)
88 COG1205 Distinct helicase fami 99.5 7.3E-13 1.6E-17 162.4 26.6 281 2-419 70-380 (851)
89 PRK04914 ATP-dependent helicas 99.5 1.9E-11 4.1E-16 150.9 38.7 83 336-420 478-563 (956)
90 PRK05580 primosome assembly pr 99.5 2.2E-12 4.7E-17 155.6 30.1 116 3-138 145-271 (679)
91 COG1111 MPH1 ERCC4-like helica 99.5 6.7E-13 1.5E-17 150.0 23.3 148 8-169 22-186 (542)
92 KOG0329 ATP-dependent RNA heli 99.5 1E-13 2.2E-18 144.9 11.6 126 2-138 64-198 (387)
93 TIGR00595 priA primosomal prot 99.5 9.5E-12 2.1E-16 145.4 26.2 99 21-140 3-108 (505)
94 TIGR01967 DEAH_box_HrpA ATP-de 99.5 2.6E-12 5.7E-17 161.2 22.1 82 337-420 262-347 (1283)
95 COG1204 Superfamily II helicas 99.4 7.3E-12 1.6E-16 151.9 21.1 113 19-145 51-165 (766)
96 COG1061 SSL2 DNA or RNA helica 99.3 3.1E-11 6.8E-16 139.0 20.0 119 1-140 37-161 (442)
97 cd00268 DEADc DEAD-box helicas 99.3 1.4E-11 2.9E-16 125.8 13.2 127 2-138 21-156 (203)
98 TIGR01407 dinG_rel DnaQ family 99.3 3.9E-10 8.5E-15 139.5 26.0 136 281-420 588-742 (850)
99 PF00270 DEAD: DEAD/DEAH box h 99.3 4E-11 8.6E-16 118.0 13.8 126 4-139 1-133 (169)
100 KOG0952 DNA/RNA helicase MER3/ 99.2 3.8E-10 8.3E-15 135.7 21.6 126 6-141 114-253 (1230)
101 cd00079 HELICc Helicase superf 99.2 1.7E-10 3.7E-15 108.2 12.5 87 332-420 7-95 (131)
102 PRK11448 hsdR type I restricti 99.2 9.2E-09 2E-13 129.8 30.7 130 3-137 414-552 (1123)
103 KOG0351 ATP-dependent DNA heli 99.1 2.6E-09 5.5E-14 131.5 20.8 270 4-420 266-552 (941)
104 KOG0352 ATP-dependent DNA heli 99.1 2.1E-09 4.6E-14 119.3 17.1 121 4-137 22-153 (641)
105 PRK07246 bifunctional ATP-depe 99.1 2.3E-08 4.9E-13 123.3 25.6 135 282-422 567-713 (820)
106 PLN03142 Probable chromatin-re 99.1 4.1E-08 8.9E-13 122.4 27.8 87 334-420 468-557 (1033)
107 PRK05298 excinuclease ABC subu 99.0 1.9E-08 4.2E-13 121.2 22.3 85 335-420 428-513 (652)
108 cd00046 DEXDc DEAD-like helica 98.9 8.4E-09 1.8E-13 95.7 11.8 111 17-138 2-116 (144)
109 COG1203 CRISPR-associated heli 98.9 8.1E-08 1.8E-12 117.4 21.6 132 291-422 373-513 (733)
110 smart00487 DEXDc DEAD-like hel 98.8 3.7E-08 8E-13 97.1 12.8 127 2-138 8-142 (201)
111 COG4098 comFA Superfamily II D 98.8 3.8E-07 8.2E-12 99.9 20.6 77 341-420 293-372 (441)
112 COG1110 Reverse gyrase [DNA re 98.8 1.1E-06 2.4E-11 106.7 26.1 125 2-138 82-216 (1187)
113 TIGR00631 uvrb excinuclease AB 98.8 1.1E-07 2.3E-12 114.7 17.2 181 229-420 324-509 (655)
114 KOG0353 ATP-dependent DNA heli 98.7 4E-07 8.7E-12 100.1 18.5 270 4-419 96-383 (695)
115 PRK08074 bifunctional ATP-depe 98.7 1.3E-06 2.9E-11 109.4 25.1 137 282-420 666-821 (928)
116 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.2E-06 2.6E-11 104.9 22.1 65 13-77 12-83 (636)
117 KOG0349 Putative DEAD-box RNA 98.6 2E-07 4.2E-12 104.0 10.3 66 355-420 507-575 (725)
118 PRK11747 dinG ATP-dependent DN 98.5 4.9E-06 1.1E-10 101.4 21.3 134 282-420 450-602 (697)
119 KOG0951 RNA helicase BRR2, DEA 98.4 2.5E-05 5.5E-10 96.5 22.9 108 19-136 329-448 (1674)
120 PF04851 ResIII: Type III rest 98.3 2.3E-06 4.9E-11 84.8 9.6 134 2-141 3-162 (184)
121 COG1643 HrpA HrpA-like helicas 98.2 0.00011 2.3E-09 90.6 21.7 122 291-419 198-329 (845)
122 COG1197 Mfd Transcription-repa 98.2 8.7E-05 1.9E-09 92.5 21.0 119 4-137 596-728 (1139)
123 COG1199 DinG Rad3-related DNA 98.2 1.9E-05 4.1E-10 95.4 15.1 65 2-66 15-86 (654)
124 PF00271 Helicase_C: Helicase 98.2 6.6E-06 1.4E-10 71.7 7.8 49 371-420 1-50 (78)
125 KOG0354 DEAD-box like helicase 98.2 3.2E-05 6.9E-10 93.0 15.9 118 8-137 69-191 (746)
126 KOG0922 DEAH-box RNA helicase 98.1 0.00016 3.6E-09 85.4 19.1 115 291-415 198-328 (674)
127 smart00490 HELICc helicase sup 98.0 2.6E-05 5.5E-10 67.0 7.9 53 368-420 2-54 (82)
128 KOG0924 mRNA splicing factor A 98.0 0.00019 4E-09 84.6 16.4 110 7-136 363-479 (1042)
129 KOG0923 mRNA splicing factor A 97.9 0.00037 7.9E-09 82.2 16.8 113 2-136 267-389 (902)
130 COG4096 HsdR Type I site-speci 97.8 0.002 4.4E-08 78.2 22.8 120 5-137 168-297 (875)
131 COG4581 Superfamily II RNA hel 97.7 0.00074 1.6E-08 84.3 16.3 124 3-143 120-246 (1041)
132 KOG0920 ATP-dependent RNA heli 97.5 0.0013 2.8E-08 81.4 15.5 111 7-137 180-299 (924)
133 KOG0385 Chromatin remodeling c 97.4 0.068 1.5E-06 64.7 27.4 88 333-420 467-557 (971)
134 TIGR00348 hsdR type I site-spe 97.3 0.0007 1.5E-08 82.5 9.5 109 17-137 265-377 (667)
135 KOG0387 Transcription-coupled 97.3 0.011 2.4E-07 71.5 18.6 86 333-419 526-615 (923)
136 KOG0948 Nuclear exosomal RNA h 97.2 0.0031 6.8E-08 75.4 12.3 116 5-141 132-250 (1041)
137 smart00488 DEXDc2 DEAD-like he 97.1 0.0016 3.5E-08 71.6 9.3 66 2-67 8-85 (289)
138 smart00489 DEXDc3 DEAD-like he 97.1 0.0016 3.5E-08 71.6 9.3 66 2-67 8-85 (289)
139 KOG0950 DNA polymerase theta/e 97.0 0.0052 1.1E-07 75.5 11.9 131 2-143 223-358 (1008)
140 PF07652 Flavi_DEAD: Flaviviru 96.1 0.011 2.3E-07 59.0 6.2 101 16-137 3-107 (148)
141 KOG1123 RNA polymerase II tran 96.1 0.14 3.1E-06 59.5 15.6 120 6-137 306-434 (776)
142 PF00176 SNF2_N: SNF2 family N 96.0 0.015 3.3E-07 62.4 7.3 109 16-137 26-146 (299)
143 PRK14873 primosome assembly pr 96.0 0.036 7.9E-07 67.7 11.3 92 24-136 169-268 (665)
144 KOG0384 Chromodomain-helicase 95.4 1.1 2.4E-05 57.3 20.7 332 17-420 391-769 (1373)
145 KOG1000 Chromatin remodeling p 95.3 1.1 2.4E-05 52.5 18.6 86 335-422 470-563 (689)
146 PRK11773 uvrD DNA-dependent he 95.2 3.2 6.8E-05 51.6 24.0 53 334-386 325-380 (721)
147 COG1198 PriA Primosomal protei 95.0 0.09 2E-06 64.6 9.6 97 19-136 221-324 (730)
148 KOG0947 Cytoplasmic exosomal R 94.7 0.66 1.4E-05 57.9 15.5 119 5-143 300-420 (1248)
149 COG0556 UvrB Helicase subunit 94.6 0.2 4.3E-06 59.0 10.5 133 279-420 377-513 (663)
150 PF12340 DUF3638: Protein of u 94.6 0.66 1.4E-05 49.7 13.7 140 5-150 26-195 (229)
151 TIGR01073 pcrA ATP-dependent D 94.2 3.5 7.7E-05 51.2 21.0 104 4-137 6-115 (726)
152 PF02399 Herpes_ori_bp: Origin 94.2 1.8 3.8E-05 53.9 17.7 67 348-420 277-343 (824)
153 TIGR01075 uvrD DNA helicase II 93.8 8.6 0.00019 47.7 23.4 104 4-137 6-115 (715)
154 PRK10919 ATP-dependent DNA hel 93.0 6.5 0.00014 48.6 20.2 108 1-137 1-114 (672)
155 KOG0389 SNF2 family DNA-depend 92.5 0.39 8.4E-06 58.7 8.5 130 5-151 402-561 (941)
156 PRK15483 type III restriction- 92.5 0.42 9.1E-06 60.4 9.1 37 19-55 63-101 (986)
157 PF13401 AAA_22: AAA domain; P 92.4 0.22 4.7E-06 47.0 5.2 55 19-73 8-65 (131)
158 PRK10536 hypothetical protein; 92.3 1.8 4E-05 47.3 12.7 65 7-72 64-144 (262)
159 PF09848 DUF2075: Uncharacteri 92.3 0.38 8.2E-06 54.3 7.9 48 20-67 6-55 (352)
160 PRK12723 flagellar biosynthesi 92.1 0.44 9.5E-06 54.9 8.1 56 20-76 179-238 (388)
161 COG0610 Type I site-specific r 90.7 1 2.3E-05 57.6 10.1 109 18-137 276-388 (962)
162 TIGR00604 rad3 DNA repair heli 90.4 0.64 1.4E-05 57.5 7.8 137 282-420 435-601 (705)
163 TIGR00376 DNA helicase, putati 90.2 2.4 5.2E-05 52.0 12.3 61 5-65 160-223 (637)
164 KOG0925 mRNA splicing factor A 89.2 0.87 1.9E-05 53.2 6.9 150 236-415 161-325 (699)
165 KOG0951 RNA helicase BRR2, DEA 89.1 0.46 9.9E-06 60.6 5.0 102 19-137 1163-1265(1674)
166 PF13245 AAA_19: Part of AAA d 88.6 1.8 3.9E-05 38.5 7.1 45 19-63 14-62 (76)
167 TIGR01425 SRP54_euk signal rec 88.4 3.3 7.2E-05 48.4 11.1 81 23-105 108-197 (429)
168 KOG0392 SNF2 family DNA-depend 88.1 0.9 1.9E-05 58.0 6.6 117 19-152 998-1138(1549)
169 PF13604 AAA_30: AAA domain; P 87.9 2 4.4E-05 44.6 8.3 58 5-62 4-65 (196)
170 KOG1805 DNA replication helica 87.9 1.8 3.9E-05 54.3 8.9 127 5-149 672-820 (1100)
171 COG0556 UvrB Helicase subunit 87.9 0.64 1.4E-05 54.9 4.9 52 15-69 29-83 (663)
172 PF00448 SRP54: SRP54-type pro 87.7 1.4 3E-05 46.0 6.9 57 23-81 9-66 (196)
173 KOG1803 DNA helicase [Replicat 87.5 1.7 3.7E-05 52.1 8.1 52 7-58 190-244 (649)
174 PF02562 PhoH: PhoH-like prote 87.2 1.9 4.1E-05 45.6 7.5 47 6-52 8-58 (205)
175 PF00580 UvrD-helicase: UvrD/R 87.2 1.4 3.1E-05 47.4 6.9 118 5-136 3-126 (315)
176 TIGR00064 ftsY signal recognit 87.0 2.9 6.2E-05 45.9 9.1 53 22-75 79-131 (272)
177 COG3587 Restriction endonuclea 85.7 1.5 3.3E-05 54.3 6.6 34 20-53 79-114 (985)
178 PRK00771 signal recognition pa 85.1 5.7 0.00012 46.7 10.8 52 23-75 103-154 (437)
179 KOG4150 Predicted ATP-dependen 84.9 15 0.00032 44.1 13.7 123 295-419 458-599 (1034)
180 KOG0949 Predicted helicase, DE 84.7 2.8 6E-05 52.8 8.1 113 19-139 530-646 (1330)
181 TIGR01447 recD exodeoxyribonuc 84.5 4.7 0.0001 49.1 10.1 67 5-71 148-221 (586)
182 PRK10875 recD exonuclease V su 84.4 2.6 5.7E-05 51.4 7.9 68 5-72 155-228 (615)
183 KOG0989 Replication factor C, 84.4 0.77 1.7E-05 51.1 3.1 34 103-140 111-144 (346)
184 PRK04296 thymidine kinase; Pro 83.8 1.1 2.4E-05 46.2 3.9 28 24-51 11-38 (190)
185 PRK10867 signal recognition pa 83.6 8.2 0.00018 45.3 11.2 84 20-104 105-197 (433)
186 TIGR03499 FlhF flagellar biosy 83.4 2.7 5.9E-05 46.2 6.9 52 23-75 202-255 (282)
187 PRK14722 flhF flagellar biosyn 83.2 5.8 0.00012 45.7 9.6 62 19-81 141-204 (374)
188 cd00009 AAA The AAA+ (ATPases 83.1 3.8 8.2E-05 38.0 6.8 38 19-56 23-60 (151)
189 PRK14974 cell division protein 82.9 3.2 7E-05 47.0 7.4 54 21-75 146-199 (336)
190 KOG1133 Helicase of the DEAD s 82.5 1.5 3.1E-05 53.4 4.5 41 2-43 15-61 (821)
191 TIGR00596 rad1 DNA repair prot 82.2 8.3 0.00018 48.7 11.1 74 86-169 1-89 (814)
192 cd01124 KaiC KaiC is a circadi 81.9 3 6.6E-05 41.8 6.1 34 20-53 4-37 (187)
193 COG4889 Predicted helicase [Ge 81.3 7 0.00015 49.0 9.6 61 16-80 182-242 (1518)
194 cd00561 CobA_CobO_BtuR ATP:cor 81.0 2.8 6.1E-05 42.6 5.4 34 19-52 4-42 (159)
195 COG2109 BtuR ATP:corrinoid ade 80.8 5.7 0.00012 41.6 7.5 31 19-49 30-62 (198)
196 cd01120 RecA-like_NTPases RecA 80.5 7.7 0.00017 37.1 8.2 36 22-57 6-41 (165)
197 smart00382 AAA ATPases associa 80.0 1.6 3.4E-05 40.0 3.0 36 20-57 7-44 (148)
198 TIGR00959 ffh signal recogniti 80.0 13 0.00028 43.7 11.1 84 20-104 104-196 (428)
199 KOG1802 RNA helicase nonsense 79.9 9.3 0.0002 46.6 9.8 70 6-79 414-486 (935)
200 PRK10416 signal recognition pa 79.7 9.2 0.0002 43.0 9.5 51 23-74 122-172 (318)
201 COG0553 HepA Superfamily II DN 79.6 17 0.00037 45.3 12.8 80 337-416 692-776 (866)
202 PRK07414 cob(I)yrinic acid a,c 79.2 4.3 9.3E-05 42.1 6.1 31 19-49 23-55 (178)
203 PRK08727 hypothetical protein; 78.5 7.5 0.00016 41.4 8.0 32 19-51 45-77 (233)
204 TIGR00708 cobA cob(I)alamin ad 78.1 4.5 9.8E-05 41.7 5.9 31 19-49 7-39 (173)
205 TIGR00631 uvrb excinuclease AB 77.7 3.3 7.2E-05 51.0 5.6 47 19-68 33-79 (655)
206 KOG0952 DNA/RNA helicase MER3/ 77.4 3.6 7.8E-05 52.2 5.7 115 19-146 947-1065(1230)
207 COG1474 CDC6 Cdc6-related prot 77.2 3.7 8.1E-05 47.0 5.5 90 19-139 46-137 (366)
208 TIGR01547 phage_term_2 phage t 77.1 4.2 9E-05 46.6 5.9 104 19-137 5-113 (396)
209 COG1419 FlhF Flagellar GTP-bin 76.8 6.1 0.00013 45.8 7.0 78 23-101 211-292 (407)
210 PRK06995 flhF flagellar biosyn 76.6 13 0.00027 44.4 9.8 81 23-105 264-349 (484)
211 cd01122 GP4d_helicase GP4d_hel 75.5 20 0.00043 38.5 10.3 116 14-138 27-153 (271)
212 COG1444 Predicted P-loop ATPas 74.6 13 0.00028 46.4 9.4 60 19-78 235-296 (758)
213 PRK05703 flhF flagellar biosyn 74.5 11 0.00024 44.1 8.5 53 23-76 229-283 (424)
214 cd03115 SRP The signal recogni 74.3 15 0.00033 36.7 8.5 52 22-74 7-58 (173)
215 COG3421 Uncharacterized protei 74.3 3.1 6.8E-05 50.0 3.9 113 20-137 2-124 (812)
216 PRK05973 replicative DNA helic 73.8 21 0.00046 38.6 9.9 37 15-51 62-100 (237)
217 KOG0349 Putative DEAD-box RNA 73.5 0.87 1.9E-05 52.4 -0.7 36 2-37 24-61 (725)
218 PRK08084 DNA replication initi 73.4 11 0.00023 40.4 7.5 34 19-53 49-83 (235)
219 TIGR02785 addA_Gpos recombinat 72.5 16 0.00034 48.4 10.2 120 4-136 3-126 (1232)
220 PF04364 DNA_pol3_chi: DNA pol 71.5 11 0.00024 37.2 6.5 71 339-422 15-92 (137)
221 PRK12726 flagellar biosynthesi 71.4 7.7 0.00017 45.0 6.1 53 23-76 214-266 (407)
222 PRK14721 flhF flagellar biosyn 70.3 15 0.00033 42.9 8.4 79 23-102 199-281 (420)
223 PF01656 CbiA: CobQ/CobB/MinD/ 70.1 6.4 0.00014 39.5 4.7 34 19-52 3-36 (195)
224 KOG0991 Replication factor C, 68.7 3.4 7.3E-05 44.8 2.3 39 103-142 91-129 (333)
225 PRK11889 flhF flagellar biosyn 68.6 20 0.00043 42.0 8.6 54 23-77 249-302 (436)
226 PF03354 Terminase_1: Phage Te 67.7 27 0.00059 41.3 9.9 51 19-69 26-80 (477)
227 cd02037 MRP-like MRP (Multiple 67.4 6.8 0.00015 39.2 4.2 31 21-51 6-36 (169)
228 PF00308 Bac_DnaA: Bacterial d 67.1 17 0.00036 38.5 7.3 54 125-179 97-165 (219)
229 PF02572 CobA_CobO_BtuR: ATP:c 65.4 12 0.00026 38.6 5.5 32 19-50 5-38 (172)
230 cd02032 Bchl_like This family 65.3 6.8 0.00015 42.2 4.0 30 23-52 8-37 (267)
231 PRK05298 excinuclease ABC subu 65.2 17 0.00037 44.9 7.8 65 1-68 11-82 (652)
232 PRK13185 chlL protochlorophyll 64.9 7.5 0.00016 41.9 4.2 31 19-50 7-37 (270)
233 COG2927 HolC DNA polymerase II 63.8 15 0.00032 37.0 5.6 81 330-423 5-93 (144)
234 KOG0391 SNF2 family DNA-depend 63.8 14 0.00031 47.7 6.6 97 25-137 644-749 (1958)
235 COG0210 UvrD Superfamily I DNA 63.6 3.6E+02 0.0077 33.2 21.7 105 4-136 4-113 (655)
236 PHA02533 17 large terminase pr 63.3 40 0.00087 40.8 10.2 67 3-70 60-131 (534)
237 TIGR01074 rep ATP-dependent DN 62.6 27 0.00058 42.9 8.9 104 5-137 4-113 (664)
238 TIGR02768 TraA_Ti Ti-type conj 62.2 21 0.00046 44.7 8.0 56 5-60 355-413 (744)
239 PRK11054 helD DNA helicase IV; 61.9 24 0.00051 44.0 8.2 84 5-110 199-286 (684)
240 PRK00411 cdc6 cell division co 61.6 11 0.00024 42.7 5.1 18 19-36 59-76 (394)
241 TIGR01968 minD_bact septum sit 61.2 9.8 0.00021 40.2 4.2 33 19-51 6-38 (261)
242 PLN03025 replication factor C 60.9 16 0.00035 40.6 6.1 14 125-138 99-112 (319)
243 cd02034 CooC The accessory pro 60.5 30 0.00064 33.1 7.0 34 20-53 4-37 (116)
244 TIGR02016 BchX chlorophyllide 60.2 10 0.00022 42.1 4.3 30 22-51 7-36 (296)
245 TIGR01007 eps_fam capsular exo 59.7 11 0.00024 38.8 4.2 36 19-54 22-57 (204)
246 PF03237 Terminase_6: Terminas 59.1 1.1E+02 0.0023 33.5 12.1 51 19-69 1-57 (384)
247 PRK06067 flagellar accessory p 58.7 16 0.00035 38.5 5.3 39 16-54 24-64 (234)
248 PRK14088 dnaA chromosomal repl 58.3 22 0.00048 41.7 6.8 14 125-138 194-207 (440)
249 TIGR02237 recomb_radB DNA repa 58.2 50 0.0011 34.0 8.8 38 16-53 11-50 (209)
250 PRK07993 DNA polymerase III su 58.2 70 0.0015 36.3 10.6 58 93-173 75-136 (334)
251 cd02042 ParA ParA and ParB of 58.1 35 0.00077 30.9 6.8 35 20-54 5-39 (104)
252 KOG0388 SNF2 family DNA-depend 58.0 58 0.0013 40.5 10.0 113 19-152 590-733 (1185)
253 PF13086 AAA_11: AAA domain; P 57.7 37 0.0008 34.6 7.7 61 5-65 4-75 (236)
254 PRK05580 primosome assembly pr 57.7 43 0.00093 41.6 9.4 76 337-413 174-251 (679)
255 PRK14723 flhF flagellar biosyn 57.0 30 0.00065 43.5 7.9 77 23-103 193-276 (767)
256 TIGR00595 priA primosomal prot 56.8 37 0.00081 40.7 8.5 63 348-411 20-84 (505)
257 KOG0390 DNA repair protein, SN 56.2 17 0.00037 45.5 5.5 53 16-72 264-323 (776)
258 PRK13869 plasmid-partitioning 55.7 13 0.00028 43.2 4.3 33 19-51 126-158 (405)
259 PF13872 AAA_34: P-loop contai 55.7 18 0.00039 40.5 5.2 113 19-137 66-184 (303)
260 cd02117 NifH_like This family 55.4 13 0.00029 38.6 4.0 28 23-50 8-35 (212)
261 PRK13235 nifH nitrogenase redu 54.8 14 0.00031 40.0 4.2 30 19-49 6-35 (274)
262 TIGR03371 cellulose_yhjQ cellu 54.5 16 0.00035 38.4 4.4 34 20-53 7-40 (246)
263 COG1435 Tdk Thymidine kinase [ 53.9 67 0.0015 34.1 8.7 27 25-51 14-40 (201)
264 PF05127 Helicase_RecD: Helica 53.8 3.3 7.2E-05 42.8 -0.8 54 20-73 2-56 (177)
265 TIGR01281 DPOR_bchL light-inde 53.7 14 0.0003 39.8 3.9 29 23-51 8-36 (268)
266 TIGR02928 orc1/cdc6 family rep 53.2 16 0.00035 40.9 4.5 14 125-138 129-142 (365)
267 PF06733 DEAD_2: DEAD_2; Inte 53.0 11 0.00025 38.0 2.9 46 85-138 113-158 (174)
268 PTZ00112 origin recognition co 52.9 18 0.0004 46.0 5.1 14 125-138 869-882 (1164)
269 TIGR03453 partition_RepA plasm 52.8 16 0.00034 42.0 4.3 33 19-51 109-141 (387)
270 cd02035 ArsA ArsA ATPase funct 52.6 17 0.00037 38.1 4.3 30 23-52 7-36 (217)
271 KOG0926 DEAH-box RNA helicase 52.2 36 0.00077 42.7 7.2 102 14-136 268-383 (1172)
272 PRK13230 nitrogenase reductase 52.0 15 0.00033 39.9 3.9 27 23-49 9-35 (279)
273 PRK06871 DNA polymerase III su 51.7 64 0.0014 36.6 8.8 59 92-173 74-135 (325)
274 TIGR01969 minD_arch cell divis 51.7 18 0.00039 38.0 4.3 33 19-51 5-37 (251)
275 PRK10037 cell division protein 51.6 18 0.00038 38.8 4.2 35 19-53 6-40 (250)
276 PF02374 ArsA_ATPase: Anion-tr 50.9 18 0.00039 40.4 4.3 32 23-54 9-40 (305)
277 PHA02518 ParA-like protein; Pr 50.6 20 0.00042 36.7 4.2 33 20-52 6-38 (211)
278 PRK13705 plasmid-partitioning 49.9 17 0.00038 41.9 4.1 32 19-50 111-142 (388)
279 PF14417 MEDS: MEDS: MEthanoge 49.0 43 0.00094 34.5 6.5 53 327-379 21-73 (191)
280 PRK05728 DNA polymerase III su 48.8 32 0.00069 34.2 5.2 52 334-385 10-65 (142)
281 PF01695 IstB_IS21: IstB-like 48.7 22 0.00048 36.5 4.3 37 19-55 51-87 (178)
282 cd02040 NifH NifH gene encodes 48.7 22 0.00047 38.0 4.4 28 23-50 9-36 (270)
283 PHA02519 plasmid partition pro 48.3 20 0.00043 41.5 4.2 32 19-50 111-142 (387)
284 PRK08760 replicative DNA helic 48.2 71 0.0015 38.1 8.9 112 14-137 226-351 (476)
285 PRK07413 hypothetical protein; 48.0 53 0.0011 38.1 7.5 31 19-49 21-59 (382)
286 cd03111 CpaE_like This protein 48.0 26 0.00055 32.7 4.2 36 19-54 4-40 (106)
287 PRK12323 DNA polymerase III su 47.9 29 0.00064 42.9 5.7 13 125-137 124-136 (700)
288 PRK07764 DNA polymerase III su 47.8 44 0.00096 42.5 7.4 13 125-137 120-132 (824)
289 TIGR03029 EpsG chain length de 47.4 22 0.00047 38.5 4.2 34 19-52 108-141 (274)
290 PRK12422 chromosomal replicati 47.3 66 0.0014 38.0 8.4 13 125-137 202-214 (445)
291 cd00550 ArsA_ATPase Oxyanion-t 47.2 21 0.00045 38.6 4.0 31 23-53 8-38 (254)
292 PRK13232 nifH nitrogenase redu 47.1 23 0.00049 38.4 4.3 29 22-50 8-36 (273)
293 cd02036 MinD Bacterial cell di 46.6 27 0.00058 34.6 4.4 30 20-49 5-34 (179)
294 cd01121 Sms Sms (bacterial rad 46.5 92 0.002 36.0 9.2 36 19-54 86-121 (372)
295 KOG1132 Helicase of the DEAD s 46.3 15 0.00033 46.1 3.0 35 2-36 21-61 (945)
296 COG1484 DnaC DNA replication p 46.2 23 0.00051 38.5 4.2 35 19-54 109-144 (254)
297 PRK14719 bifunctional RNAse/5- 45.6 77 0.0017 36.5 8.3 74 336-416 7-82 (360)
298 PRK13236 nitrogenase reductase 45.5 22 0.00048 39.3 4.0 30 23-52 14-43 (296)
299 COG1192 Soj ATPases involved i 45.4 27 0.00058 37.4 4.4 32 19-50 7-39 (259)
300 KOG0338 ATP-dependent RNA heli 45.4 31 0.00067 41.3 5.1 64 32-99 415-484 (691)
301 TIGR01287 nifH nitrogenase iro 45.3 21 0.00046 38.6 3.7 27 23-49 8-34 (275)
302 TIGR00609 recB exodeoxyribonuc 45.0 46 0.001 43.7 7.2 56 15-70 8-73 (1087)
303 PF05970 PIF1: PIF1-like helic 44.9 21 0.00045 40.8 3.7 59 15-75 20-81 (364)
304 KOG0925 mRNA splicing factor A 44.9 46 0.00099 39.7 6.3 101 15-136 60-170 (699)
305 KOG1015 Transcription regulato 44.9 28 0.0006 44.3 4.8 138 17-167 698-875 (1567)
306 PRK07994 DNA polymerase III su 44.7 44 0.00096 41.3 6.6 13 125-137 119-131 (647)
307 PRK13234 nifH nitrogenase redu 44.6 26 0.00056 38.8 4.3 29 22-50 11-39 (295)
308 PRK12724 flagellar biosynthesi 44.4 57 0.0012 38.4 7.1 52 23-75 231-283 (432)
309 PRK14964 DNA polymerase III su 44.3 40 0.00086 40.4 6.0 42 93-137 86-128 (491)
310 KOG1002 Nucleotide excision re 44.2 59 0.0013 38.8 7.1 117 16-138 205-329 (791)
311 cd01983 Fer4_NifH The Fer4_Nif 44.1 38 0.00083 29.2 4.5 28 23-50 7-34 (99)
312 TIGR00604 rad3 DNA repair heli 44.1 1.7E+02 0.0036 36.6 11.6 63 3-66 11-83 (705)
313 TIGR00347 bioD dethiobiotin sy 44.1 29 0.00063 34.4 4.2 30 20-49 3-32 (166)
314 PRK10818 cell division inhibit 43.9 29 0.00062 37.3 4.4 34 19-52 7-40 (270)
315 COG3972 Superfamily I DNA and 43.9 70 0.0015 38.4 7.6 111 20-136 181-306 (660)
316 PF00004 AAA: ATPase family as 43.3 53 0.0011 30.4 5.6 65 23-138 6-71 (132)
317 PF03796 DnaB_C: DnaB-like hel 43.3 33 0.00071 36.9 4.7 112 15-137 17-142 (259)
318 PRK12377 putative replication 43.1 31 0.00066 37.6 4.5 37 19-56 105-142 (248)
319 PF06862 DUF1253: Protein of u 43.0 21 0.00045 42.1 3.4 43 89-139 129-175 (442)
320 PRK13849 putative crown gall t 42.9 29 0.00062 37.2 4.2 33 19-51 6-38 (231)
321 cd02033 BchX Chlorophyllide re 42.7 26 0.00056 39.7 4.0 30 22-51 38-67 (329)
322 PRK14956 DNA polymerase III su 42.7 35 0.00075 40.8 5.1 13 125-137 121-133 (484)
323 CHL00072 chlL photochlorophyll 42.4 27 0.00058 38.7 4.0 28 23-50 8-35 (290)
324 KOG0388 SNF2 family DNA-depend 42.3 71 0.0015 39.8 7.5 87 332-419 1023-1111(1185)
325 CHL00175 minD septum-site dete 42.2 30 0.00065 37.5 4.3 31 19-49 20-50 (281)
326 PRK09361 radB DNA repair and r 42.0 1.1E+02 0.0024 31.9 8.4 37 16-52 22-60 (225)
327 COG0552 FtsY Signal recognitio 41.9 1.1E+02 0.0024 35.0 8.6 86 24-137 148-233 (340)
328 PRK14873 primosome assembly pr 41.9 1.1E+02 0.0024 38.1 9.4 76 337-413 172-250 (665)
329 COG3598 RepA RecA-family ATPas 41.8 37 0.00079 38.7 4.8 57 19-75 93-158 (402)
330 COG3973 Superfamily I DNA and 41.8 32 0.00068 42.0 4.6 51 19-73 230-286 (747)
331 PRK05595 replicative DNA helic 41.5 1.1E+02 0.0024 35.9 9.0 111 15-137 199-323 (444)
332 PRK04523 N-acetylornithine car 41.1 1.5E+02 0.0033 33.8 9.7 91 4-99 148-252 (335)
333 PRK04596 minC septum formation 40.9 16 0.00035 39.8 1.9 44 551-605 171-216 (248)
334 TIGR03015 pepcterm_ATPase puta 40.7 39 0.00085 36.0 4.8 51 19-73 47-98 (269)
335 PRK13233 nifH nitrogenase redu 40.5 32 0.0007 37.2 4.2 30 19-49 7-37 (275)
336 PLN02229 alpha-galactosidase 40.4 1.3E+02 0.0029 35.4 9.3 117 217-361 88-216 (427)
337 PRK07952 DNA replication prote 40.3 34 0.00074 37.1 4.3 37 18-55 102-139 (244)
338 PF13361 UvrD_C: UvrD-like hel 40.3 1.3E+02 0.0029 32.5 9.0 54 332-385 53-109 (351)
339 PRK08116 hypothetical protein; 40.3 31 0.00067 37.8 4.0 37 18-55 117-154 (268)
340 COG0553 HepA Superfamily II DN 40.1 86 0.0019 39.2 8.4 40 554-593 777-816 (866)
341 PRK14949 DNA polymerase III su 40.0 51 0.0011 42.2 6.2 14 125-138 119-132 (944)
342 PRK06090 DNA polymerase III su 40.0 1.3E+02 0.0028 34.1 8.9 57 93-172 75-135 (319)
343 cd01393 recA_like RecA is a b 39.7 1E+02 0.0022 32.0 7.7 37 16-52 18-62 (226)
344 cd01523 RHOD_Lact_B Member of 39.7 50 0.0011 29.8 4.7 36 351-386 59-94 (100)
345 PRK00339 minC septum formation 39.5 17 0.00037 39.6 1.9 44 551-605 172-217 (249)
346 COG4626 Phage terminase-like p 39.5 83 0.0018 38.1 7.5 50 19-68 90-143 (546)
347 TIGR03600 phage_DnaB phage rep 39.4 1.2E+02 0.0027 35.1 8.9 113 14-137 191-317 (421)
348 COG0541 Ffh Signal recognition 39.4 1.1E+02 0.0024 36.1 8.3 58 24-83 109-167 (451)
349 PRK13231 nitrogenase reductase 39.0 19 0.0004 38.8 2.0 29 19-49 7-35 (264)
350 smart00489 DEXDc3 DEAD-like he 38.7 24 0.00052 39.1 2.9 43 86-137 206-248 (289)
351 smart00488 DEXDc2 DEAD-like he 38.7 24 0.00052 39.1 2.9 43 86-137 206-248 (289)
352 PRK11823 DNA repair protein Ra 38.7 1.2E+02 0.0025 35.9 8.7 88 19-140 84-171 (446)
353 TIGR00665 DnaB replicative DNA 38.4 1.7E+02 0.0038 33.9 10.0 111 15-137 193-317 (434)
354 COG0003 ArsA Predicted ATPase 38.3 33 0.00071 38.9 3.9 34 23-56 10-43 (322)
355 PRK14948 DNA polymerase III su 38.2 46 0.001 41.0 5.4 33 102-137 101-133 (620)
356 PF01408 GFO_IDH_MocA: Oxidore 38.2 46 0.001 30.8 4.3 88 290-382 27-118 (120)
357 PF12846 AAA_10: AAA-like doma 38.2 73 0.0016 34.0 6.4 36 19-54 5-40 (304)
358 PRK12727 flagellar biosynthesi 38.0 75 0.0016 38.6 6.9 52 23-75 358-411 (559)
359 PRK13342 recombination factor 37.9 57 0.0012 37.9 5.9 13 125-137 92-104 (413)
360 PRK13886 conjugal transfer pro 37.7 40 0.00086 36.7 4.3 32 19-50 7-38 (241)
361 PRK14960 DNA polymerase III su 37.3 42 0.0009 41.7 4.8 13 125-137 118-130 (702)
362 PRK11670 antiporter inner memb 37.2 38 0.00083 38.9 4.3 36 19-54 112-147 (369)
363 KOG0386 Chromatin remodeling c 37.0 53 0.0011 42.2 5.6 120 1-137 395-527 (1157)
364 PRK04195 replication factor C 36.7 80 0.0017 37.4 7.0 14 125-138 98-111 (482)
365 TIGR03018 pepcterm_TyrKin exop 36.4 43 0.00092 34.8 4.2 31 23-53 44-75 (207)
366 cd02028 UMPK_like Uridine mono 36.3 42 0.0009 34.3 4.0 35 23-57 7-41 (179)
367 PF13344 Hydrolase_6: Haloacid 36.0 63 0.0014 30.1 4.8 43 343-385 20-66 (101)
368 PRK14951 DNA polymerase III su 35.4 42 0.0009 41.4 4.4 14 125-138 124-137 (618)
369 PRK04516 minC septum formation 35.2 22 0.00047 38.5 1.8 44 551-605 156-201 (235)
370 PF06745 KaiC: KaiC; InterPro 34.8 88 0.0019 32.7 6.3 35 19-53 23-58 (226)
371 PRK06646 DNA polymerase III su 34.8 86 0.0019 31.8 5.9 52 332-383 8-63 (154)
372 COG0489 Mrp ATPases involved i 34.7 40 0.00087 36.9 3.8 33 19-51 62-94 (265)
373 PHA03333 putative ATPase subun 34.6 1.3E+02 0.0029 37.6 8.4 53 19-71 191-244 (752)
374 PRK14958 DNA polymerase III su 34.0 44 0.00095 40.2 4.2 13 125-137 119-131 (509)
375 KOG1131 RNA polymerase II tran 33.9 62 0.0013 39.0 5.2 39 4-42 18-64 (755)
376 COG2519 GCD14 tRNA(1-methylade 33.3 79 0.0017 34.8 5.6 52 327-379 163-214 (256)
377 PRK06526 transposase; Provisio 33.2 31 0.00067 37.6 2.6 37 19-55 102-138 (254)
378 PF13307 Helicase_C_2: Helicas 32.9 1E+02 0.0023 31.0 6.2 66 352-420 8-78 (167)
379 TIGR03158 cas3_cyano CRISPR-as 32.8 1.8E+02 0.0038 33.2 8.7 56 42-99 271-326 (357)
380 PHA02544 44 clamp loader, smal 32.7 59 0.0013 35.8 4.7 13 125-137 100-112 (316)
381 KOG0739 AAA+-type ATPase [Post 32.5 1.3E+02 0.0029 34.1 7.2 94 248-363 127-234 (439)
382 PRK14963 DNA polymerase III su 32.5 69 0.0015 38.5 5.6 13 125-137 116-128 (504)
383 PHA02535 P terminase ATPase su 32.4 2.1E+02 0.0046 35.1 9.5 117 19-160 157-288 (581)
384 PRK01973 septum formation inhi 32.3 26 0.00056 38.8 1.8 44 551-605 191-236 (271)
385 COG0470 HolB ATPase involved i 32.1 71 0.0015 34.8 5.2 16 125-140 109-124 (325)
386 PRK09183 transposase/IS protei 32.1 56 0.0012 35.6 4.4 36 19-54 106-141 (259)
387 TIGR03877 thermo_KaiC_1 KaiC d 32.0 44 0.00094 35.6 3.5 45 19-64 25-69 (237)
388 TIGR00174 miaA tRNA isopenteny 32.0 61 0.0013 36.2 4.7 70 291-361 4-97 (287)
389 KOG2036 Predicted P-loop ATPas 32.0 39 0.00084 41.8 3.3 101 20-137 280-391 (1011)
390 PRK07471 DNA polymerase III su 31.9 1E+02 0.0022 35.4 6.6 23 18-40 44-67 (365)
391 PRK14952 DNA polymerase III su 31.8 55 0.0012 40.1 4.6 13 125-137 118-130 (584)
392 PRK05896 DNA polymerase III su 31.8 98 0.0021 38.1 6.7 42 93-137 89-131 (605)
393 PRK03511 minC septum formation 31.7 26 0.00057 37.7 1.7 45 551-606 151-197 (228)
394 COG0513 SrmB Superfamily II DN 31.4 2.8E+02 0.0061 33.3 10.5 65 31-99 261-331 (513)
395 TIGR03880 KaiC_arch_3 KaiC dom 31.3 99 0.0021 32.3 5.9 35 19-53 20-54 (224)
396 cd02038 FleN-like FleN is a me 31.2 67 0.0014 31.3 4.3 32 21-52 6-37 (139)
397 PRK07667 uridine kinase; Provi 31.0 59 0.0013 33.5 4.1 37 22-59 24-61 (193)
398 PRK14016 cyanophycin synthetas 30.8 1.2E+02 0.0026 38.1 7.4 86 20-107 482-579 (727)
399 PHA02542 41 41 helicase; Provi 30.7 76 0.0016 37.9 5.4 45 15-59 188-237 (473)
400 PRK08939 primosomal protein Dn 30.4 61 0.0013 36.3 4.4 38 17-55 158-196 (306)
401 COG0794 GutQ Predicted sugar p 30.3 3.7E+02 0.0081 28.7 9.8 85 12-101 35-140 (202)
402 TIGR00614 recQ_fam ATP-depende 30.2 1.6E+02 0.0035 34.8 8.0 69 28-100 211-285 (470)
403 cd00984 DnaB_C DnaB helicase C 30.1 73 0.0016 33.5 4.8 37 15-51 11-50 (242)
404 CHL00095 clpC Clp protease ATP 30.1 48 0.001 42.1 3.9 29 19-49 543-571 (821)
405 TIGR03881 KaiC_arch_4 KaiC dom 30.0 1E+02 0.0022 32.3 5.8 36 16-51 19-56 (229)
406 PRK04537 ATP-dependent RNA hel 30.0 1.5E+02 0.0033 36.1 8.0 58 38-99 252-315 (572)
407 PRK05636 replicative DNA helic 30.0 3E+02 0.0065 33.2 10.3 111 15-137 263-387 (505)
408 cd01524 RHOD_Pyr_redox Member 29.9 84 0.0018 27.9 4.4 36 351-386 49-84 (90)
409 PRK06964 DNA polymerase III su 29.9 1.7E+02 0.0037 33.5 7.9 28 125-172 132-159 (342)
410 COG1198 PriA Primosomal protei 29.9 1.4E+02 0.003 37.7 7.6 71 341-412 233-305 (730)
411 TIGR03345 VI_ClpV1 type VI sec 29.6 74 0.0016 40.7 5.4 32 19-52 600-631 (852)
412 KOG0926 DEAH-box RNA helicase 29.6 48 0.001 41.7 3.5 81 290-376 416-504 (1172)
413 PRK11519 tyrosine kinase; Prov 29.5 50 0.0011 41.3 3.8 31 22-52 534-564 (719)
414 PF02670 DXP_reductoisom: 1-de 29.4 1.5E+02 0.0033 29.3 6.4 76 291-385 3-78 (129)
415 COG1074 RecB ATP-dependent exo 29.1 81 0.0018 41.7 5.8 54 15-69 16-79 (1139)
416 PRK09302 circadian clock prote 28.9 2.6E+02 0.0057 33.3 9.6 35 19-53 277-311 (509)
417 PRK02102 ornithine carbamoyltr 28.8 2.2E+02 0.0048 32.5 8.5 90 3-99 134-232 (331)
418 PF01935 DUF87: Domain of unkn 28.8 63 0.0014 33.8 4.0 39 16-54 23-63 (229)
419 PRK05707 DNA polymerase III su 28.8 2.1E+02 0.0046 32.4 8.4 56 93-171 73-132 (328)
420 PRK04837 ATP-dependent RNA hel 28.8 1.9E+02 0.004 33.5 8.2 57 39-99 251-313 (423)
421 PF02606 LpxK: Tetraacyldisacc 28.7 91 0.002 35.3 5.4 90 25-133 47-154 (326)
422 PRK06835 DNA replication prote 28.5 66 0.0014 36.5 4.3 35 19-54 187-222 (329)
423 PRK10876 recB exonuclease V su 28.3 1.2E+02 0.0027 40.2 7.2 55 15-70 16-88 (1181)
424 PRK08691 DNA polymerase III su 28.3 76 0.0017 39.7 5.0 34 101-137 98-131 (709)
425 smart00450 RHOD Rhodanese Homo 28.0 93 0.002 26.9 4.4 36 351-386 54-90 (100)
426 PHA03372 DNA packaging termina 28.0 1.8E+02 0.0038 36.0 7.8 55 19-73 206-263 (668)
427 PRK09841 cryptic autophosphory 27.9 53 0.0012 41.1 3.7 31 22-52 539-569 (726)
428 COG3640 CooC CO dehydrogenase 27.9 60 0.0013 35.4 3.6 43 23-74 8-51 (255)
429 PF07015 VirC1: VirC1 protein; 27.8 72 0.0016 34.6 4.2 38 20-57 7-46 (231)
430 PRK00030 minC septum formation 27.6 34 0.00074 38.2 1.7 44 551-605 213-258 (292)
431 PRK09200 preprotein translocas 27.6 1.8E+02 0.0038 37.1 8.0 55 41-99 426-484 (790)
432 PRK13107 preprotein translocas 27.5 1.9E+02 0.0041 37.3 8.2 55 41-99 447-505 (908)
433 PF04273 DUF442: Putative phos 27.3 1.7E+02 0.0037 28.0 6.2 57 302-372 49-105 (110)
434 PF13177 DNA_pol3_delta2: DNA 26.9 1.5E+02 0.0032 29.8 6.1 58 92-172 68-129 (162)
435 PF10861 DUF2784: Protein of U 26.5 36 0.00079 32.8 1.5 19 572-590 57-75 (112)
436 PRK03515 ornithine carbamoyltr 26.3 3E+02 0.0065 31.5 9.0 88 3-99 133-233 (336)
437 PF01113 DapB_N: Dihydrodipico 26.3 1.9E+02 0.0041 27.7 6.5 55 356-412 70-124 (124)
438 COG1565 Uncharacterized conser 26.3 1.3E+02 0.0029 34.7 6.1 49 18-67 80-133 (370)
439 PRK04804 minC septum formation 26.1 38 0.00083 36.2 1.8 44 551-605 143-188 (221)
440 PRK14965 DNA polymerase III su 25.8 1.3E+02 0.0027 36.9 6.3 13 125-137 119-131 (576)
441 PRK05563 DNA polymerase III su 25.8 98 0.0021 37.7 5.3 13 125-137 119-131 (559)
442 TIGR01005 eps_transp_fam exopo 25.6 64 0.0014 40.4 3.8 34 19-52 551-584 (754)
443 COG2805 PilT Tfp pilus assembl 25.4 56 0.0012 37.0 2.9 37 15-53 124-162 (353)
444 PRK11192 ATP-dependent RNA hel 25.2 2E+02 0.0044 33.2 7.7 54 42-99 244-303 (434)
445 PRK09111 DNA polymerase III su 25.0 1.2E+02 0.0026 37.4 5.8 35 100-137 110-144 (598)
446 PF13245 AAA_19: Part of AAA d 25.0 1.1E+02 0.0025 27.0 4.3 36 338-373 23-62 (76)
447 TIGR02524 dot_icm_DotB Dot/Icm 25.0 1.1E+02 0.0023 35.3 5.1 47 7-53 125-173 (358)
448 PRK11034 clpA ATP-dependent Cl 24.9 98 0.0021 39.2 5.2 13 125-137 557-569 (758)
449 TIGR03878 thermo_KaiC_2 KaiC d 24.9 1.7E+02 0.0036 31.8 6.5 34 19-52 40-73 (259)
450 PF15609 PRTase_2: Phosphoribo 24.9 1.2E+02 0.0027 31.9 5.1 53 25-77 132-184 (191)
451 PF13614 AAA_31: AAA domain; P 24.6 96 0.0021 30.0 4.2 31 23-53 9-39 (157)
452 PTZ00007 (NAP-L) nucleosome as 24.5 1.8E+02 0.0039 33.4 6.7 46 632-677 43-88 (337)
453 PRK13768 GTPase; Provisional 24.3 81 0.0018 34.2 3.9 29 23-52 10-39 (253)
454 PRK14962 DNA polymerase III su 24.3 99 0.0021 36.9 4.9 13 125-137 117-129 (472)
455 PRK14957 DNA polymerase III su 24.2 1.1E+02 0.0025 37.1 5.4 13 125-137 119-131 (546)
456 PRK11057 ATP-dependent DNA hel 24.2 1.9E+02 0.0041 35.5 7.4 60 37-100 230-295 (607)
457 KOG0342 ATP-dependent RNA heli 24.1 2E+02 0.0044 34.5 7.1 38 561-598 401-438 (543)
458 TIGR01222 minC septum site-det 24.0 45 0.00098 35.5 1.8 44 551-605 141-186 (217)
459 COG1196 Smc Chromosome segrega 23.9 73 0.0016 42.1 4.0 19 124-143 1087-1105(1163)
460 PTZ00035 Rad51 protein; Provis 23.8 1.7E+02 0.0036 33.4 6.4 101 17-138 118-226 (337)
461 PRK07003 DNA polymerase III su 23.7 1.1E+02 0.0023 39.0 5.0 13 125-137 119-131 (830)
462 cd01521 RHOD_PspE2 Member of t 23.6 1.2E+02 0.0026 28.0 4.4 36 351-386 62-99 (110)
463 PF06823 DUF1236: Protein of u 23.6 71 0.0015 27.9 2.6 22 227-248 40-61 (65)
464 cd00079 HELICc Helicase superf 23.6 3.8E+02 0.0082 24.4 7.8 55 42-100 27-87 (131)
465 PRK08451 DNA polymerase III su 23.6 1.3E+02 0.0029 36.5 5.8 43 92-137 86-129 (535)
466 PRK05564 DNA polymerase III su 23.5 3.2E+02 0.0069 30.3 8.5 34 101-137 72-105 (313)
467 PF00956 NAP: Nucleosome assem 23.5 2.2E+02 0.0048 30.7 7.0 46 633-678 5-50 (244)
468 KOG4439 RNA polymerase II tran 23.3 1.4E+02 0.0029 37.4 5.7 117 15-137 345-475 (901)
469 PRK10436 hypothetical protein; 23.3 1.2E+02 0.0025 36.2 5.2 38 14-53 216-254 (462)
470 TIGR03815 CpaE_hom_Actino heli 23.3 96 0.0021 34.5 4.3 34 19-52 98-131 (322)
471 PRK06731 flhF flagellar biosyn 23.1 1.8E+02 0.0039 32.2 6.2 51 24-75 84-134 (270)
472 cd01126 TraG_VirD4 The TraG/Tr 22.9 60 0.0013 37.1 2.7 55 19-79 3-57 (384)
473 PRK09112 DNA polymerase III su 22.8 2.5E+02 0.0053 32.2 7.5 13 125-137 141-153 (351)
474 PRK06893 DNA replication initi 22.8 1.5E+02 0.0032 31.5 5.4 74 291-365 44-136 (229)
475 PRK09165 replicative DNA helic 22.7 3E+02 0.0064 33.1 8.5 112 14-137 214-353 (497)
476 TIGR00635 ruvB Holliday juncti 22.5 1.2E+02 0.0025 33.2 4.8 13 125-137 81-93 (305)
477 PRK06645 DNA polymerase III su 22.4 1.6E+02 0.0034 35.6 6.1 34 101-137 107-140 (507)
478 PRK07399 DNA polymerase III su 22.4 4.9E+02 0.011 29.3 9.7 27 125-171 124-150 (314)
479 PRK14950 DNA polymerase III su 22.3 1.2E+02 0.0027 36.9 5.3 13 125-137 120-132 (585)
480 cd01529 4RHOD_Repeats Member o 22.2 1.5E+02 0.0032 26.6 4.6 36 351-386 54-90 (96)
481 cd03028 GRX_PICOT_like Glutare 22.1 2.8E+02 0.006 25.0 6.4 51 353-404 7-63 (90)
482 PRK11776 ATP-dependent RNA hel 22.1 2.5E+02 0.0055 32.8 7.7 58 38-99 237-300 (460)
483 PF10609 ParA: ParA/MinD ATPas 22.1 1.6E+02 0.0034 27.0 4.6 60 19-82 5-64 (81)
484 PF00148 Oxidored_nitro: Nitro 22.1 4E+02 0.0086 30.4 9.1 59 44-103 145-204 (398)
485 TIGR01279 DPOR_bchN light-inde 21.7 4.6E+02 0.0099 30.5 9.6 91 283-384 78-186 (407)
486 PRK05986 cob(I)alamin adenolsy 21.6 1.7E+02 0.0036 30.9 5.4 34 15-49 21-56 (191)
487 TIGR01313 therm_gnt_kin carboh 21.6 7.6E+02 0.017 24.1 10.0 93 291-385 3-100 (163)
488 PRK05177 minC septum formation 21.5 51 0.0011 35.7 1.6 44 551-605 162-207 (239)
489 PRK14969 DNA polymerase III su 21.5 1.7E+02 0.0036 35.5 6.1 13 125-137 119-131 (527)
490 cd01534 4RHOD_Repeat_3 Member 21.2 1.3E+02 0.0029 26.9 4.1 35 352-386 55-89 (95)
491 PF05707 Zot: Zonular occluden 21.1 1E+02 0.0022 31.8 3.7 28 22-50 7-34 (193)
492 TIGR01389 recQ ATP-dependent D 21.1 2.5E+02 0.0054 34.2 7.6 62 35-100 216-283 (591)
493 PRK10917 ATP-dependent DNA hel 21.1 3.4E+02 0.0074 33.9 8.8 63 348-411 305-372 (681)
494 PRK08181 transposase; Validate 21.0 1.1E+02 0.0023 33.8 4.0 34 19-53 110-144 (269)
495 PF06564 YhjQ: YhjQ protein; 20.9 1.2E+02 0.0026 33.1 4.3 33 19-52 6-39 (243)
496 cd01444 GlpE_ST GlpE sulfurtra 20.8 2E+02 0.0043 25.4 5.1 36 350-385 53-89 (96)
497 cd01123 Rad51_DMC1_radA Rad51_ 20.8 3E+02 0.0066 28.6 7.3 103 16-138 18-128 (235)
498 PTZ00454 26S protease regulato 20.7 3E+02 0.0064 32.2 7.7 20 16-35 180-199 (398)
499 PRK06921 hypothetical protein; 20.7 1.1E+02 0.0024 33.4 4.1 36 19-54 121-157 (266)
500 cd01526 RHOD_ThiF Member of th 20.6 1.2E+02 0.0026 28.6 3.9 36 351-386 70-107 (122)
No 1
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.1e-214 Score=1859.12 Aligned_cols=784 Identities=49% Similarity=0.774 Sum_probs=692.0
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++||++||+|+||||+|||||||+++||+|++||+|++|||||+|||||+||++||+|||++||||||++.++
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~ 163 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD 163 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.||||||||++||||||||||+.+.++.++| +++|||||||||||||||||||||||+...+..+|.
T Consensus 164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~ 240 (939)
T PRK12902 164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ 240 (939)
T ss_pred CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999988889998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHccc------CCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEEC
Q 002898 161 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (869)
Q Consensus 161 ~~~~~~~~l~~------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 234 (869)
.++.+++.|.+ +.||.+|++.++++||++|+.++|.++++.+||++.++|.++|.+||+|+++|++|+||||+|
T Consensus 241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d 320 (939)
T PRK12902 241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320 (939)
T ss_pred HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 99999999987 779999999999999999999999999999999988899999999999999999999999999
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002898 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (869)
Q Consensus 235 ~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 314 (869)
|+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus 321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv 400 (939)
T PRK12902 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT 400 (939)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHH
Q 002898 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (869)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea 394 (869)
+||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||||+||||++.++++||
T Consensus 401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766889999
Q ss_pred HHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002898 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (869)
Q Consensus 395 ~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (869)
+||++||++|+||||||||||||||+|||||+++++..++..+.+......+.... +........++.++++.
T Consensus 481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 553 (939)
T PRK12902 481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKP------PVPLQRGLKGGQGFGPK- 553 (939)
T ss_pred HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhcccccccccccccc------ccccccccccccccccc-
Confidence 99999999999999999999999999999999999887654433322221111000 00000111244444433
Q ss_pred HHHHHHhhhccccCCchhhhhhhhh---hhhhhhhhhhhhHHHHHHH------------------HhhhccCCCCChhhH
Q 002898 475 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKL------------------IDKQSAMYPLGPTVA 533 (869)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 533 (869)
.+++.+.|+.+.|.-+ +++.+..+.....-.+++. .+......+....++
T Consensus 554 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (939)
T PRK12902 554 ---------AKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR 624 (939)
T ss_pred ---------cccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence 5677899998877521 1111111111111111100 011112344456789
Q ss_pred HHHhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHH
Q 002898 534 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD 613 (869)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~ 613 (869)
.+|..++.+++..|.+++++|+++|||||||||||||||||||||||||||||||+|||||||||||||+|| ++++.+
T Consensus 625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~ 702 (939)
T PRK12902 625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG 702 (939)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhcCCCCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 002898 614 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 693 (869)
Q Consensus 614 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~ 693 (869)
+|+++++++++||+|++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++
T Consensus 703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~ 780 (939)
T PRK12902 703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780 (939)
T ss_pred HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999954 58999999999999
Q ss_pred HHHHHHhcCCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCcccccc
Q 002898 694 VDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGI 773 (869)
Q Consensus 694 i~~iv~~~~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (869)
|+.+++.+..+...+++|++++|...+.... ... ..+++ ..
T Consensus 781 i~~~v~~~~~~~~~~~~w~~~~l~~~l~~~~--~~~---~~~~~------------------------------~~---- 821 (939)
T PRK12902 781 MDEIVEAYVNPDLPPEEWDLDQLVSKVKEFV--YLL---EDLKP------------------------------ED---- 821 (939)
T ss_pred HHHHHHHhcCCccChhhccHHHHHHHHHHHh--cCh---hhcCh------------------------------Hh----
Confidence 9999999987665678899999988776421 000 00000 00
Q ss_pred ccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002898 774 RRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLIN 852 (869)
Q Consensus 774 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~-~~~~e~~~~~ER~vlL~~ID~~W~eHLd~ 852 (869)
...++.++++++|.+.+...|..|.... ..+++.++++||.++|++||.+|++||++
T Consensus 822 ----------------------~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~iD~~W~eHL~~ 879 (939)
T PRK12902 822 ----------------------LEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQIDTLWREHLQS 879 (939)
T ss_pred ----------------------hccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123457789999999999998774332 12677999999999999999999999999
Q ss_pred HHHHHhhhhhhhcccc
Q 002898 853 MNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 853 Md~LRegIgLR~Y~q~ 868 (869)
|++||++|+||+||||
T Consensus 880 md~Lre~I~lR~ygQk 895 (939)
T PRK12902 880 MDALRESVGLRGYGQK 895 (939)
T ss_pred HHHHHHhhhhhhhccC
Confidence 9999999999999997
No 2
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=100.00 E-value=3.4e-204 Score=1780.17 Aligned_cols=759 Identities=46% Similarity=0.728 Sum_probs=670.1
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||+|+|||+||++||+|||++||||||++.++
T Consensus 75 ~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~ 154 (870)
T CHL00122 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEG 154 (870)
T ss_pred CCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.||||||||++||||||||||+.++++.|+| +++|||||||||||||+|+||||||||.+.....|.
T Consensus 155 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r---~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~ 231 (870)
T CHL00122 155 MSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQR---PFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYI 231 (870)
T ss_pred CChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhcc---ccceeeeecchhheeccCCCceeccCCCccchHHHH
Confidence 99999999999999999999999999999999998899998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEECCeEEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~iv 240 (869)
.++.+++.|.++.||.+|++.++++||++|+.++|.++++++||+..++|.++|.+||+|+++|++|+||||+||+|+||
T Consensus 232 ~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iV 311 (870)
T CHL00122 232 VADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311 (870)
T ss_pred HHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEE
Confidence 99999999999899999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCC
Q 002898 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNL 320 (869)
Q Consensus 241 De~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~ 320 (869)
|++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|++||||+
T Consensus 312 De~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk 391 (870)
T CHL00122 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR 391 (870)
T ss_pred ECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHc
Q 002898 321 PNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQA 400 (869)
Q Consensus 321 p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~A 400 (869)
|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||.+|.+.||||+||||++.++++||+||++|
T Consensus 392 p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A 471 (870)
T CHL00122 392 PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA 471 (870)
T ss_pred CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999654579999999999
Q ss_pred CCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHH
Q 002898 401 GRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480 (869)
Q Consensus 401 G~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (869)
|++|+||||||||||||||+|||||+++++..++..+.+....+.... .
T Consensus 472 G~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~ 520 (870)
T CHL00122 472 GRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKIST-------------------------------I 520 (870)
T ss_pred CCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhccccccccccc-------------------------------c
Confidence 999999999999999999999999999999887654433221110000 0
Q ss_pred hhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhh-hccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898 481 KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDK-QSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (869)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (869)
+..+ ...-.|.....+.. . .+. ...+.+...++. .....+....++.+|...+..+++.|.+++++|+++||
T Consensus 521 ~~~~-~~~~~~~~~~~~~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GG 593 (870)
T CHL00122 521 SQNF-LNILNSLKNDLKFL-S----LSD-FENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGG 593 (870)
T ss_pred cccc-hhhhhhcccchhhh-c----ccc-cccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCC
Confidence 0000 00111211111110 0 000 000000000000 01123345558999999999999999999999999999
Q ss_pred eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHH
Q 002898 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (869)
Q Consensus 560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (869)
|||||||||||||||||||||||||||||+|+|||||||+||+.|| ++++.++|+++++ +++||++++++++|++||
T Consensus 594 L~VIgTErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~l~~~f~--~~~~~~~~~~~~~-~~~~i~~~~~~~~i~~aQ 670 (870)
T CHL00122 594 LYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFG--GDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQ 670 (870)
T ss_pred CEEEecCcCchHHHHHHHhccccCCCCCCcceEEEEeccHHHHhhC--hHHHHHHHHHhCC-CCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999 899999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Q 002898 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (869)
Q Consensus 640 ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~ 719 (869)
+++|++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++++.+++ +.++..+ .+|++++|...
T Consensus 671 ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~-~~~~~~~-~~~~~~~l~~~ 746 (870)
T CHL00122 671 KKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILES--QSLRDWILAYGEQVIDDIIT-FLKSRKN-PNNKFINLINK 746 (870)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH-hcCccCc-ccccHHHHHHH
Confidence 99999999999999999999999999999999999965 58999999999999999999 7655443 45999999887
Q ss_pred HHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002898 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (869)
Q Consensus 720 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 799 (869)
+...++... .++ +. ..+..
T Consensus 747 ~~~~~~~~~-----~~~------------------------------~~--------------------------~~~~~ 765 (870)
T CHL00122 747 FKELLKLPL-----CFN------------------------------KS--------------------------DLNTL 765 (870)
T ss_pred HHHHhCCCC-----Ccc------------------------------hh--------------------------hhcCC
Confidence 764321100 000 00 00123
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 800 TTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 800 ~~~~l~~~L~e~~~~~y~~k~~~~-~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
+.+++++++.+.++..|..+.... ..+++.++++||.++|++||.+|++||++|++||+||+||+|||+
T Consensus 766 ~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~~~~er~~~L~~iD~~W~eHL~~md~Lr~~I~lR~ygQk 835 (870)
T CHL00122 766 NSGELKKFLYQQFWISYDLKELYLEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQK 835 (870)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccC
Confidence 457789999999999998764322 127889999999999999999999999999999999999999997
No 3
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.9e-204 Score=1785.71 Aligned_cols=663 Identities=44% Similarity=0.665 Sum_probs=612.2
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~- 79 (869)
|||||||++||++||+|+||||+||||||||++||+|||||+|++|||||+|||||+||++||+|+|+||||||||+.+
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~ 247 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKH 247 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCC-ccc
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VAR 158 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~-~~~ 158 (869)
++++++|+.+|.||||||||++||||||||||+.+++++||| +++||||||||||||||||||||||||.+.. ...
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR---~~~fAIVDEvDSILIDEARTPLIISGp~~~~~~~~ 324 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQR---KHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQE 324 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCc---CCceeEeechhhhhhccccCcEEEeCCCCCccHHH
Confidence 789999999999999999999999999999999999999999 9999999999999999999999999996655 467
Q ss_pred HHHHHHHHHHc------------------------------------------------cc-------------------
Q 002898 159 YPVAAKVAELL------------------------------------------------VQ------------------- 171 (869)
Q Consensus 159 ~~~~~~~~~~l------------------------------------------------~~------------------- 171 (869)
|..++.++..| .+
T Consensus 325 y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e~~~~~~n~ 404 (1112)
T PRK12901 325 FEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTENFYMQDNN 404 (1112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 77666644443 22
Q ss_pred --------CCCeEEeCCCCeeeccHhhHHHHHH------Hh----------ccCCCCC------------------CCCc
Q 002898 172 --------GLHYTVELKNNSVELTEEGIALAEM------AL----------ETNDLWD------------------ENDP 209 (869)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~------~~----------~~~~L~~------------------~~~~ 209 (869)
+.||.+|++.++++||++|+.+++. +| +++++|+ .+..
T Consensus 405 ~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~~~~~~~~~ 484 (1112)
T PRK12901 405 REMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQDYSVKSE 484 (1112)
T ss_pred hcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhhhhhhhHhH
Confidence 3599999999999999999999988 66 6778876 2235
Q ss_pred HHHHHHHHHHHHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcC
Q 002898 210 WARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYP 289 (869)
Q Consensus 210 ~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~ 289 (869)
+.|+|.+||+|+++|++|+||||+||+|+|||++|||+|+|||||+||||||||||||+|+++++|+|+||||||||+|+
T Consensus 485 ~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~ 564 (1112)
T PRK12901 485 RVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYH 564 (1112)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHH
Q 002898 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 369 (869)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~l 369 (869)
||+||||||+|++.||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.|
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~l 644 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELL 644 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccc
Q 002898 370 SDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVE 449 (869)
Q Consensus 370 s~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (869)
|++|+..||||+|||| ++|++||+||++||++|+||||||||||||||+||
T Consensus 645 S~~L~~~gI~H~VLNA--K~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg--------------------------- 695 (1112)
T PRK12901 645 SRMLKMRKIPHNVLNA--KLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS--------------------------- 695 (1112)
T ss_pred HHHHHHcCCcHHHhhc--cchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccc---------------------------
Confidence 9999999999999999 68999999999999999999999999999999998
Q ss_pred cccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCC
Q 002898 450 VDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLG 529 (869)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (869)
T Consensus 696 -------------------------------------------------------------------------------- 695 (1112)
T PRK12901 696 -------------------------------------------------------------------------------- 695 (1112)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCch
Q 002898 530 PTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTS 609 (869)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~ 609 (869)
++|+++|||||||||||||||||||||||||||||||||+|||||||+|||.|| ++
T Consensus 696 ----------------------~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fg--s~ 751 (1112)
T PRK12901 696 ----------------------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFG--SE 751 (1112)
T ss_pred ----------------------hhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhC--cH
Confidence 479999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHhhcCCCCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH
Q 002898 610 WAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQY 689 (869)
Q Consensus 610 ~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~ 689 (869)
++.++|.++++++|+||+|++++++|++||++||++||++||+||+||+|||.||++||++|+.+|.+ +++.+.|.+|
T Consensus 752 ri~~~m~~~g~~ege~I~~~~i~ksIe~AQkkvE~~nf~iRK~lleYDdVmn~QR~vIY~~R~~iL~~--~~l~~~i~~~ 829 (1112)
T PRK12901 752 RIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMG--ERLGMDIANM 829 (1112)
T ss_pred HHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999955 5899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCcc
Q 002898 690 MQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNL 769 (869)
Q Consensus 690 i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (869)
++++++.+++.+.. .||+++|..++...++... .+++ ..
T Consensus 830 i~~~i~~~v~~~~~------~~~~~~l~~~~~~~~~~~~-----~~~~------------------------------~~ 868 (1112)
T PRK12901 830 IYDVCEAIVENNKV------ANDYKGFKFELIRTLAMES-----PITE------------------------------EE 868 (1112)
T ss_pred HHHHHHHHHHHhcC------hhhHHHHHHHHHHHhCccc-----CCCH------------------------------HH
Confidence 99999999998753 4688988877654321000 0000 00
Q ss_pred ccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhh--------------------------
Q 002898 770 FRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-------------------------- 823 (869)
Q Consensus 770 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~-------------------------- 823 (869)
+..+..+++.++|.+.+...|..|....
T Consensus 869 --------------------------~~~~~~~~l~~~l~~~~~~~y~~K~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~ 922 (1112)
T PRK12901 869 --------------------------FNKLKKDELTDKLYDAALENYQRKMERIAEIAFPVIKQVYEEQGNMYERIVVPF 922 (1112)
T ss_pred --------------------------hhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhcccccccccccccc
Confidence 0112456778888898999997764332
Q ss_pred ------------------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 824 ------------------RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 824 ------------------~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
..+++.+++|||.++|++||..|++||++||+||++|+||+||||
T Consensus 923 tdg~~~~~~~~~l~~~~~~~g~~~~~~~er~i~L~~ID~~W~eHL~~md~Lr~~I~lr~y~Qk 985 (1112)
T PRK12901 923 TDGKRTLNVVTNLKEAYETEGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQK 985 (1112)
T ss_pred cccccceeeeccHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccC
Confidence 015678999999999999999999999999999999999999997
No 4
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-203 Score=1764.20 Aligned_cols=666 Identities=44% Similarity=0.683 Sum_probs=626.2
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++||++||+|+||||+||||||||++||+||+||+|++|||||+|+|||+||++||+|||+|||||||++.++
T Consensus 77 ~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~ 156 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKAN 156 (925)
T ss_pred CCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.||||||||++||||||||||+.+.+++||| +++|||||||||||||+||||||||||.+..+.+|.
T Consensus 157 ~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR---~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~ 233 (925)
T PRK12903 157 MDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQR---GLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYL 233 (925)
T ss_pred CChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCc---ccceeeeccchheeecccCCcccccCCCccchHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEECCeEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~i 239 (869)
.++.++..|.++ ||.+|++.++++||++|+.++|.++++.+||+..+ .+.|||.+||+|+++|++|+||||+||+|+|
T Consensus 234 ~~~~~v~~L~~~-dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~I 312 (925)
T PRK12903 234 AADQFVRTLKED-DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIEL 312 (925)
T ss_pred HHHHHHHhcccc-ceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEE
Confidence 999999999865 99999999999999999999999999999998754 7899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002898 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (869)
Q Consensus 240 vDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (869)
||+||||+|+||+||+||||||||||||+|+++++|+|+||||||||+|++|+||||||++++.||+++||++|++||||
T Consensus 313 VDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTn 392 (925)
T PRK12903 313 VDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTN 392 (925)
T ss_pred EECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH
Q 002898 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (869)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~ 399 (869)
+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.||.+|++.||+|+|||| ++|++||+||++
T Consensus 393 kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA--k~~e~EA~IIa~ 470 (925)
T PRK12903 393 KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA--KQNAREAEIIAK 470 (925)
T ss_pred CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc--cchhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 689999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002898 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (869)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (869)
||++|+||||||||||||||+||
T Consensus 471 AG~~GaVTIATNMAGRGTDI~Lg--------------------------------------------------------- 493 (925)
T PRK12903 471 AGQKGAITIATNMAGRGTDIKLS--------------------------------------------------------- 493 (925)
T ss_pred CCCCCeEEEecccccCCcCccCc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (869)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (869)
++|+++||
T Consensus 494 ------------------------------------------------------------------------~~V~~~GG 501 (925)
T PRK12903 494 ------------------------------------------------------------------------KEVLELGG 501 (925)
T ss_pred ------------------------------------------------------------------------hhHHHcCC
Confidence 36889999
Q ss_pred eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCc-hhHHHHHhhcCCCCCCcccchhHHHHHHHH
Q 002898 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT-SWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (869)
Q Consensus 560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (869)
|||||||||||||||||||||||||||||||+|||||||+|||+|| + +++.++|.+++++ ||++++++++|++|
T Consensus 502 LhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~--~~~ri~~~~~~l~~~---~i~~~~i~~~ie~A 576 (925)
T PRK12903 502 LYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFS--NFDKIKEAFKKLGDD---EIKSKFFSKALLNA 576 (925)
T ss_pred cEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHhC--CHHHHHHHHHhcCCC---cccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9 9999999999863 89999999999999
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHH
Q 002898 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLK 718 (869)
Q Consensus 639 Q~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~ 718 (869)
|++||++||++||++|+||+|||.||++||++|+.||.+ +++.+.|..|++++|+.+++.+.++. .++.||+++|..
T Consensus 577 QkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~w~~~~l~~ 653 (925)
T PRK12903 577 QKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA--DDLSHVIEKMISRAVEQILKNSFIIL-KNNTINYKELVE 653 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCcc-chhhcCHHHHHH
Confidence 999999999999999999999999999999999999954 58999999999999999999988655 578899999988
Q ss_pred HHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccc
Q 002898 719 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 798 (869)
Q Consensus 719 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 798 (869)
.+...++.+... .+ ++..| ..
T Consensus 654 ~l~~~~~~i~~~---~~-------------------------------------------~~~~~-------------~~ 674 (925)
T PRK12903 654 FLNDNLLRITHF---KF-------------------------------------------SEKDF-------------EN 674 (925)
T ss_pred HHHHHhhhcccc---CC-------------------------------------------CHHHH-------------cc
Confidence 876542210000 00 00111 12
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 799 ATTNLLRKYLGDILIASYLNVVQES--RYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 799 ~~~~~l~~~L~e~~~~~y~~k~~~~--~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
++.+++.++|.+.+...|..+.+.. ..+++.++++||.++|++||.+|++||++||+||+|||||+|||+
T Consensus 675 ~~~~~l~~~l~~~~~~~y~~k~~~~~~~~g~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~lR~y~Qk 746 (925)
T PRK12903 675 YHKEELAQYLIEALNEIYFKKRQVILDKIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQK 746 (925)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 3457789999999999998764332 126778999999999999999999999999999999999999997
No 5
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-200 Score=1756.40 Aligned_cols=698 Identities=44% Similarity=0.703 Sum_probs=644.6
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++||++||+|+||||+||||||||++||+|++||+|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 81 m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~ 160 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPF 160 (913)
T ss_pred CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.||||||||++||||||||+|+.+.++.||| +++||||||||||||||||||||||||.+....+|.
T Consensus 161 ~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr---~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~ 237 (913)
T PRK13103 161 QPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQR---ELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYI 237 (913)
T ss_pred CCHHHHHHHhcCCEEEEcccccccchhhccceechhhhccc---ccceeEechhhheeccccCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999988899999 999999999999999999999999999998888999
Q ss_pred HHHHHHHHccc-----------CCCeEEeCCCCeeeccHhhHHHHHHHh---cc----CCCCCCCC-cHHHHHHHHHHHH
Q 002898 161 VAAKVAELLVQ-----------GLHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (869)
Q Consensus 161 ~~~~~~~~l~~-----------~~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~Al~A~ 221 (869)
.++.++..|.+ +.||.+|++.++++||++|+.+++.++ ++ .+||+..+ .+.+||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~ 317 (913)
T PRK13103 238 EINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAH 317 (913)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHH
Confidence 99999998854 259999999999999999999999987 55 67888755 6899999999999
Q ss_pred HHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH
Q 002898 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (869)
Q Consensus 222 ~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te 301 (869)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te 397 (913)
T PRK13103 318 KLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTE 397 (913)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~ 381 (869)
+.||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||+|+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~ 477 (913)
T PRK13103 398 AFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHK 477 (913)
T ss_pred HHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhh
Q 002898 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (869)
Q Consensus 382 vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (869)
|||| ++|++||+||++||++|+||||||||||||||+|||||++..+ . +. +
T Consensus 478 VLNA--k~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~----~-----~~-~----------------- 528 (913)
T PRK13103 478 VLNA--KYHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVA----A-----LE-N----------------- 528 (913)
T ss_pred Hhcc--ccchhHHHHHHcCCCCCcEEEeccCCCCCCCEecCCchHHHHH----h-----hh-h-----------------
Confidence 9999 6899999999999999999999999999999999999986321 0 00 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhh
Q 002898 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (869)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (869)
.-...+.
T Consensus 529 -------------------------------------------------------------------------~~~~~~~ 535 (913)
T PRK13103 529 -------------------------------------------------------------------------PTPEQIA 535 (913)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0012345
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCC
Q 002898 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (869)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (869)
++++.|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||+.|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg--~~~~~~~~~~~~~~ 613 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFA--SDRVKNFMKALGMQ 613 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhC--cHHHHHHHHHcCCC
Confidence 6778899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhc
Q 002898 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (869)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~ 701 (869)
+++||+|++++++|++||+++|++||++||++++||+|||.||++||++|+.||++ +++.+.+.+|++++++.+++.+
T Consensus 614 e~~~I~~~~i~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~ 691 (913)
T PRK13103 614 SGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA--ENIGETIAEFREEVLNATISQH 691 (913)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999955 5899999999999999999988
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhh
Q 002898 702 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 781 (869)
Q Consensus 702 ~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 781 (869)
.++...+++||+++|...+...++..+. +.
T Consensus 692 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~--------------------------------------------------~~ 721 (913)
T PRK13103 692 IPPQSLPEQWDVAGLEAALASDFAVKLP--------------------------------------------------IQ 721 (913)
T ss_pred cCCccChhhcCHHHHHHHHHHHcCCCCC--------------------------------------------------HH
Confidence 7666567889999998877543211000 00
Q ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 002898 782 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVY 861 (869)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIg 861 (869)
.|. ++ ....+.+++.++|.+.+.+.|..| +..++++.+++|||.++|++||..|++||++||+||++|+
T Consensus 722 ~~~----~~-----~~~~~~~~l~~~l~~~~~~~y~~k--~~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~ 790 (913)
T PRK13103 722 QWL----DE-----DDHLYEETLREKILEELLAAYNEK--EDQAGAEALRTFEKQILLRVLDDLWKDHLSTMDHLRHGIH 790 (913)
T ss_pred HhH----hh-----hccCCHHHHHHHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 00 011245678899999999999876 3446888999999999999999999999999999999999
Q ss_pred hhhcccc
Q 002898 862 HNIYFSQ 868 (869)
Q Consensus 862 LR~Y~q~ 868 (869)
||+||||
T Consensus 791 lr~y~Qk 797 (913)
T PRK13103 791 LRGYAQK 797 (913)
T ss_pred hhhhccC
Confidence 9999997
No 6
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2e-196 Score=1719.78 Aligned_cols=698 Identities=42% Similarity=0.666 Sum_probs=643.2
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++||++||+|+||||+|||||||+|+||+|++||+|++|||||||+|||+||++||+|||++|||||+++.++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~ 160 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG 160 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++.+|+.+|.||||||||++||||||||||+.++++.||| +++||||||||||||||||||||||||.+....+|.
T Consensus 161 ~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr---~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~ 237 (908)
T PRK13107 161 LGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQR---PLHYALIDEVDSILIDEARTPLIISGAAEDSSELYI 237 (908)
T ss_pred CCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhcc---ccceeeecchhhhccccCCCceeecCCCccchHHHH
Confidence 99999999999999999999999999999999998899999 999999999999999999999999999988888999
Q ss_pred HHHHHHHHcccC-----------CCeEEeCCCCeeeccHhhHHHHHHHh---cc----CCCCCCCC-cHHHHHHHHHHHH
Q 002898 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (869)
Q Consensus 161 ~~~~~~~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~Al~A~ 221 (869)
.++.++..|.+. .||.+|++.++++||++|+.+++.++ ++ .+||+..+ .|.|||.+||+|+
T Consensus 238 ~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~ 317 (908)
T PRK13107 238 KINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAH 317 (908)
T ss_pred HHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHH
Confidence 999999988742 59999999999999999999999987 54 67998754 6899999999999
Q ss_pred HHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH
Q 002898 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (869)
Q Consensus 222 ~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te 301 (869)
++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|++|+||||||+|+
T Consensus 318 ~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te 397 (908)
T PRK13107 318 TLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTE 397 (908)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~ 381 (869)
+.||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.+|.+|+..|++|+
T Consensus 398 ~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~ 477 (908)
T PRK13107 398 AFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHE 477 (908)
T ss_pred HHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhh
Q 002898 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (869)
Q Consensus 382 vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (869)
+||| +++++|++||++||++|+||||||||||||||+|||||++..+ . +. + +
T Consensus 478 vLna--k~~~~Ea~ii~~Ag~~G~VtIATnmAGRGTDIkLggn~~~~~~----~-----~~-~-~--------------- 529 (908)
T PRK13107 478 VLNA--KFHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIE----A-----LE-N-P--------------- 529 (908)
T ss_pred eccC--cccHHHHHHHHhCCCCCcEEEecCCcCCCcceecCCchHHhhh----h-----hc-c-h---------------
Confidence 9999 5789999999999999999999999999999999999986211 0 00 0 0
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhh
Q 002898 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (869)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (869)
-...+.
T Consensus 530 --------------------------------------------------------------------------~~~~~~ 535 (908)
T PRK13107 530 --------------------------------------------------------------------------TAEQKA 535 (908)
T ss_pred --------------------------------------------------------------------------hhHHHH
Confidence 012345
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCC
Q 002898 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (869)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (869)
++++.|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||+.|| ++++.++|++++++
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~--~~~~~~~~~~~~~~ 613 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFA--SDRVSGMMKKLGME 613 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhC--hHHHHHHHHHcCCC
Confidence 6778899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhc
Q 002898 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (869)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~ 701 (869)
+++||+|++++++|++||++||++||++||+|++||+|||.||++||++|+.||.+ +++.+.+.+|++++++.+++.+
T Consensus 614 e~~~i~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~ 691 (908)
T PRK13107 614 EGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDA--ESIEDTIKNIQDDVINGVIDQY 691 (908)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999954 5899999999999999999988
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhh
Q 002898 702 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 781 (869)
Q Consensus 702 ~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 781 (869)
+++...++.||+++|...+...++..+. + .
T Consensus 692 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~---------------------------------------------~ 721 (908)
T PRK13107 692 IPPQSVEELWDVPGLEQRLHQEFMLKLP-----I---------------------------------------------Q 721 (908)
T ss_pred cCCCcchhhccHHHHHHHHHHHcCCCCC-----H---------------------------------------------H
Confidence 6554446789999998777543211000 0 0
Q ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 002898 782 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVY 861 (869)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIg 861 (869)
.+ .++ ....+.+++.++|.+.+.+.|..| ...++++.+++|||.++|++||.+|++||++||+||++|+
T Consensus 722 ~~----~~~-----~~~~~~~~~~~~l~~~~~~~y~~k--~~~~~~~~~~~~er~i~L~~iD~~W~eHL~~md~Lr~~I~ 790 (908)
T PRK13107 722 EW----LDK-----EDDLHEETLRERIVTSWSDAYKAK--EEMVGAQVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIH 790 (908)
T ss_pred Hh----hhh-----hccCCHHHHHHHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 000 112345778999999999999876 3446788999999999999999999999999999999999
Q ss_pred hhhcccc
Q 002898 862 HNIYFSQ 868 (869)
Q Consensus 862 LR~Y~q~ 868 (869)
||+||||
T Consensus 791 lr~y~Qk 797 (908)
T PRK13107 791 LRGYAQK 797 (908)
T ss_pred hhhhccC
Confidence 9999997
No 7
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.2e-195 Score=1713.43 Aligned_cols=699 Identities=40% Similarity=0.654 Sum_probs=644.6
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++||++||+|+||||+||||||++|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg 160 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPD 160 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.|||+||||++||||||||+|+.+.++.||| +++||||||||||||||||||||||||.+....+|.
T Consensus 161 ~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r---~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~ 237 (896)
T PRK13104 161 MSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQR---ELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYI 237 (896)
T ss_pred CCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhcc---ccceEEeccHhhhhhhccCCceeeeCCCccchHHHH
Confidence 99999999999999999999999999999998888888998 999999999999999999999999999998888999
Q ss_pred HHHHHHHHcccC------CCeEEeCCCCeeeccHhhHHHHHHHh---cc----CCCCCCCC-cHHHHHHHHHHHHHHhcc
Q 002898 161 VAAKVAELLVQG------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAKEFYRR 226 (869)
Q Consensus 161 ~~~~~~~~l~~~------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~Al~A~~l~~~ 226 (869)
.++.++..|.++ .||.+|++.++++||++|+.++|.++ ++ ++||+..+ .+.|+|.+||+|+++|++
T Consensus 238 ~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~ 317 (896)
T PRK13104 238 KINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHR 317 (896)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcC
Confidence 999999999876 69999999999999999999999988 66 68998644 689999999999999999
Q ss_pred CcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHH
Q 002898 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (869)
Q Consensus 227 d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 306 (869)
|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|+||+||||||+|++.||+
T Consensus 318 d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~ 397 (896)
T PRK13104 318 DIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQ 397 (896)
T ss_pred CCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||+|++.||.||.+|++.||+|++|||
T Consensus 398 ~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna- 476 (896)
T PRK13104 398 QIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNA- 476 (896)
T ss_pred HHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhc
Q 002898 387 PKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLG 466 (869)
Q Consensus 387 ~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (869)
+++++|++||++||++|+||||||||||||||+|||||++... .. +.
T Consensus 477 -k~~q~Ea~iia~Ag~~G~VtIATNmAGRGtDI~Lggn~~~~~~----~~---------~~------------------- 523 (896)
T PRK13104 477 -KFHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLA----NL---------PA------------------- 523 (896)
T ss_pred -CCChHHHHHHHhCCCCCcEEEeccCccCCcceecCCchhhhhh----cc---------cc-------------------
Confidence 5789999999999999999999999999999999999976210 00 00
Q ss_pred chhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhcccc
Q 002898 467 SSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVH 546 (869)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (869)
+ .-...+.++++.
T Consensus 524 --------------------~-----------------------------------------------~~~~~~~~~~~~ 536 (896)
T PRK13104 524 --------------------D-----------------------------------------------ASEQEKEAVKKE 536 (896)
T ss_pred --------------------c-----------------------------------------------hhhHHHHHHHHH
Confidence 0 002344567788
Q ss_pred ccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcc
Q 002898 547 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPI 626 (869)
Q Consensus 547 ~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i 626 (869)
|.+++++|+++|||||||||||||||||||||||||||||||||+|||||||+||+.|| ++++.++|+++++++++||
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i 614 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFA--SERVASMMRRLGMQPGEPI 614 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhC--hHHHHHHHHHcCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 002898 627 EGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLK 706 (869)
Q Consensus 627 ~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~ 706 (869)
++++++++|++||+++|++||++||++++||+|||.||++||++|+.||++ +++.+.+..|++++++.+++.++.+..
T Consensus 615 ~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~~ 692 (896)
T PRK13104 615 EHSLVTRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM--TDTQEVVEMMREEVMDSLVDTYIPPQS 692 (896)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999955 478999999999999999998865444
Q ss_pred CCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhh
Q 002898 707 HPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAI 786 (869)
Q Consensus 707 ~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 786 (869)
.+++||+++|...+...++..+. + ..|.
T Consensus 693 ~~~~~~~~~l~~~~~~~~~~~~~-----~---------------------------------------------~~~~-- 720 (896)
T PRK13104 693 LEDQWDPQALSDVLSDEFKIKAP-----V---------------------------------------------PDWI-- 720 (896)
T ss_pred chhhccHHHHHHHHHHhcCCCCC-----h---------------------------------------------hhhh--
Confidence 46789999998877643211000 0 0000
Q ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcc
Q 002898 787 CSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYF 866 (869)
Q Consensus 787 ~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~ 866 (869)
++ ....+.++++++|.+.+...|..| ...++++.+++|||.++|++||.+|++||++||+||+||+||+||
T Consensus 721 --~~-----~~~~~~~~~~~~l~~~~~~~y~~k--~~~~g~~~~~~~er~i~L~~iD~~W~ehL~~md~Lr~~I~lr~y~ 791 (896)
T PRK13104 721 --DK-----DHSIQPEQIKEKILALAIEHYDEK--VRKVGRPVISQFEKSIILQTLDNHWREHLAAMDQLRQGIHLRGYA 791 (896)
T ss_pred --hh-----hccCCHHHHHHHHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 00 112245788999999999999876 445688899999999999999999999999999999999999999
Q ss_pred cc
Q 002898 867 SQ 868 (869)
Q Consensus 867 q~ 868 (869)
||
T Consensus 792 Qk 793 (896)
T PRK13104 792 QK 793 (896)
T ss_pred cC
Confidence 97
No 8
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.5e-194 Score=1703.07 Aligned_cols=697 Identities=48% Similarity=0.767 Sum_probs=652.3
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++||++||+|+||||+|||||||||+||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 80 ~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~ 159 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSG 159 (830)
T ss_pred CCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.|||+||||++||||||||+|+.+.++.++| +++|||||||||||||||+||||||||.+...++|.
T Consensus 160 ~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r---~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~ 236 (830)
T PRK12904 160 MSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQR---GLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYK 236 (830)
T ss_pred CCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhccc---ccceEEEechhhheeccCCCceeeECCCCcccHHHH
Confidence 99999999999999999999999999999999888889998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEECCeEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~i 239 (869)
.++.++..|.++.||.+|++.++++||++|+.++|.++++++||+..+ +|.+||.+||+|+++|++|+||||+||+|+|
T Consensus 237 ~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~i 316 (830)
T PRK12904 237 RANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVI 316 (830)
T ss_pred HHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 999999999988899999999999999999999999999999998754 7899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002898 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (869)
Q Consensus 240 vDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (869)
||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|++||||
T Consensus 317 vDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 396 (830)
T PRK12904 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTN 396 (830)
T ss_pred EECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH
Q 002898 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (869)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~ 399 (869)
+|++|+|+||.||.|..+||.+|+++|.++|.+||||||||+|++.||.|+..|.+.|++|++||| +++++|++|+++
T Consensus 397 kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna--kq~eREa~Iia~ 474 (830)
T PRK12904 397 RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA--KNHEREAEIIAQ 474 (830)
T ss_pred CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC--chHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002898 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (869)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (869)
||++|+||||||||||||||+|||||+++++..+..
T Consensus 475 Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~-------------------------------------------- 510 (830)
T PRK12904 475 AGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE-------------------------------------------- 510 (830)
T ss_pred cCCCceEEEecccccCCcCccCCCchhhhhhhhhhh--------------------------------------------
Confidence 999999999999999999999999999998754310
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (869)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (869)
.+...+.+++++|.+++++|+++||
T Consensus 511 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 511 -------------------------------------------------------ETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred -------------------------------------------------------hhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 0122345677889999999999999
Q ss_pred eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHH
Q 002898 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (869)
Q Consensus 560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (869)
|||||||||||||||||||||||||||||||+||||||||||+.|| ++++.++|.++++++++||++++++++|++||
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 613 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFG--SDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQ 613 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhc--hHHHHHHHHHcCCCCCCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Q 002898 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (869)
Q Consensus 640 ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~ 719 (869)
+++|++||++||++++||+|||.||++||++|++||++ +++.+.|.+|++++|+.+++.+.++...+++|++++|...
T Consensus 614 ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 691 (830)
T PRK12904 614 KKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG--EDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEA 691 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHhcCCCcChhhcCHHHHHHH
Confidence 99999999999999999999999999999999999954 5899999999999999999999866555678999999888
Q ss_pred HHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002898 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (869)
Q Consensus 720 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 799 (869)
+...++.... +..|+. ..+
T Consensus 692 l~~~~~~~~~--------------------------------------------------~~~~~~-----------~~~ 710 (830)
T PRK12904 692 LKTDFGLELP--------------------------------------------------IEEWLE-----------EGL 710 (830)
T ss_pred HHHHcCCCCC--------------------------------------------------hhHHhh-----------cCC
Confidence 7643211000 000000 012
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 800 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 800 ~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
+.++++++|.+.+...|..+ +..++++.++++||.++|++||.+|++||++||+||+||+||+||||
T Consensus 711 ~~~~~~~~l~~~~~~~y~~k--~~~~g~e~~~~~eR~i~L~~iD~~W~eHL~~md~LRegI~lR~y~Qk 777 (830)
T PRK12904 711 DEEELRERILEAAEEAYEEK--EEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQK 777 (830)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccC
Confidence 34678999999999999876 34467889999999999999999999999999999999999999997
No 9
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.6e-191 Score=1677.92 Aligned_cols=661 Identities=44% Similarity=0.703 Sum_probs=608.0
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+|||||++||++||+|+||||+||||||||++||+|||||+|++|||||+|||||+||++||+|+|+|||||||||.++
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~ 216 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNT 216 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCC-cccH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD-VARY 159 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~-~~~~ 159 (869)
+++++|+.+|.||||||||++||||||||||+.+++++||| +++|||||||||||||+||||||||||.+.. ...|
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR---~~~faIVDEvDSvLIDeARTPLIISgp~~~~~~~~y 293 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQR---DFYFAIVDEVDSVLIDEARTPLIISGPVPNADNSKF 293 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhcc---CCceEEEechhhhhhccccCceEEeCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999996655 5555
Q ss_pred HHHH----H---------------------------------------------HHHHccc-------------------
Q 002898 160 PVAA----K---------------------------------------------VAELLVQ------------------- 171 (869)
Q Consensus 160 ~~~~----~---------------------------------------------~~~~l~~------------------- 171 (869)
..+. . +++.|.+
T Consensus 294 ~~~~~~~~~lv~~q~~l~~~~l~ea~~~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~~e~~y~~dn~ 373 (1025)
T PRK12900 294 QEIKPWIEQLVRAQQNLVASYLTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQSTENEYLKDNS 373 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhhhhhHhhhhhh
Confidence 4433 1 2222322
Q ss_pred --------CCCeEEeCCCCeeeccHhhHHHHHHHhc--------------------------------cCC---CCCCCC
Q 002898 172 --------GLHYTVELKNNSVELTEEGIALAEMALE--------------------------------TND---LWDEND 208 (869)
Q Consensus 172 --------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~--------------------------------~~~---L~~~~~ 208 (869)
+.||.+|++.+++.||++|+.+++.+.. .++ +|+...
T Consensus 374 ~~~~~~~~~~~~~iDek~~~v~LTe~G~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~~l~~~~~~~~ 453 (1025)
T PRK12900 374 SRMHEVDDELYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDEVYRLFAERS 453 (1025)
T ss_pred hhccccCCCCeEEEEcCCCeeeecHhHHHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhhHHHhhcchhh
Confidence 2489999999999999999999988531 123 444455
Q ss_pred cHHHHHHHHHHHHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhc
Q 002898 209 PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLY 288 (869)
Q Consensus 209 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y 288 (869)
.+.|+|.+||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+||||||||+|
T Consensus 454 ~~~h~i~qaLkA~~lf~kD~~YvV~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y 533 (1025)
T PRK12900 454 ERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLY 533 (1025)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHH
Q 002898 289 PKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368 (869)
Q Consensus 289 ~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ 368 (869)
+||+||||||+|++.||+++|+++|++||||+|++|+|+||.||.|..+||.+|+++|.+.|.+||||||||+|++.||.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~ 613 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSET 613 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhccc
Q 002898 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNV 448 (869)
Q Consensus 369 ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (869)
|+.+|++.||+|++||| +++++|++|++.||++|+||||||||||||||+||
T Consensus 614 Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~-------------------------- 665 (1025)
T PRK12900 614 LSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG-------------------------- 665 (1025)
T ss_pred HHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCc--------------------------
Confidence 99999999999999999 68999999999999999999999999999999998
Q ss_pred ccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCC
Q 002898 449 EVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPL 528 (869)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (869)
T Consensus 666 -------------------------------------------------------------------------------- 665 (1025)
T PRK12900 666 -------------------------------------------------------------------------------- 665 (1025)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCc
Q 002898 529 GPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDT 608 (869)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~ 608 (869)
++|.++||||||||+||||+|||+||+||||||||||+|+||+|+||+|||.|| +
T Consensus 666 -----------------------~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~--~ 720 (1025)
T PRK12900 666 -----------------------EGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFG--S 720 (1025)
T ss_pred -----------------------cchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhC--c
Confidence 368899999999999999999999999999999999999999999999999999 9
Q ss_pred hhHHHHHhhcCCCCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Q 002898 609 SWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQ 688 (869)
Q Consensus 609 ~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~ 688 (869)
+++.++|.+++.++++||+++|++++|++||++||++||++||+||+||+|||.||++||++|+.+|.+ +++...|.+
T Consensus 721 ~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQk~vE~~nf~iRk~lleyDdv~n~QR~vIY~~R~~~L~~--~~~~~~i~~ 798 (1025)
T PRK12900 721 DRVISVMDRLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTRRRNGLIK--ERLTSDIFD 798 (1025)
T ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 589999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCc
Q 002898 689 YMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPN 768 (869)
Q Consensus 689 ~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (869)
|+.++++.+++.+. .+||+++|..++...+.... .+++ .
T Consensus 799 ~~~~~~~~~v~~~~------~~~~~~~l~~~~~~~~~~~~-----~~~~------------------------------~ 837 (1025)
T PRK12900 799 LLRDYCDTVVKKYH------KALDVDGLEEQVLRELSVEF-----KPER------------------------------D 837 (1025)
T ss_pred HHHHHHHHHHHHHh------hhccHHHHHHHHHHHhCccC-----CCCH------------------------------H
Confidence 99999999998764 26999999877754321000 0000 0
Q ss_pred cccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHH
Q 002898 769 LFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRD 848 (869)
Q Consensus 769 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~e 848 (869)
. +...+.+++.++|.+.+...|..|. ..++++.+++|||.++|++||.+|++
T Consensus 838 ~--------------------------~~~~~~~~~~~~l~~~~~~~y~~k~--~~~~~~~~~~~er~i~L~~iD~~W~e 889 (1025)
T PRK12900 838 T--------------------------FEREGVEGTADKLYNTALAFYRRKE--EAVPEDIMRQIEKYAVLSVIDQKWRE 889 (1025)
T ss_pred H--------------------------HhcCCHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1123457788999999999998763 44678899999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccc
Q 002898 849 HLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 849 HLd~Md~LRegIgLR~Y~q~ 868 (869)
||++||+||++|+||+||||
T Consensus 890 HL~~md~Lr~~I~lr~y~Qk 909 (1025)
T PRK12900 890 HLREIDSLREGINLRAYGQK 909 (1025)
T ss_pred HHHHHHHHHHhhhhhhhccC
Confidence 99999999999999999997
No 10
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.6e-191 Score=1642.82 Aligned_cols=608 Identities=39% Similarity=0.605 Sum_probs=571.6
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++|+++||+|+||||+|||||||+++||+|++||.|++|||||||+|||+||++||+|+|++|||+|+++.++
T Consensus 77 ~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~ 156 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEE 156 (764)
T ss_pred CCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.||||||||++||||||||||+.++++.++| +++|||||||||||||+|+||||||||.+.. ..|.
T Consensus 157 ~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R---~~~faIVDEvDSiLIDeArtPLiISg~~~~~-~~y~ 232 (764)
T PRK12326 157 STPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSP---NPDVAIIDEADSVLVDEALVPLVLAGSTPGE-APRG 232 (764)
T ss_pred CCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCC---ccceeeecchhhheeccccCceeeeCCCcch-hHHH
Confidence 99999999999999999999999999999999988899998 9999999999999999999999999999887 7899
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC--cHHHHHHHHHHHHHHhccCcceEEECCeEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND--PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~--~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ 238 (869)
.++.++..|.++.||.+|++.++++||++|+.++|+++++.++|+..+ .+.++|++||+|+++|++|+||||+||+|+
T Consensus 233 ~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~ 312 (764)
T PRK12326 233 EIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVH 312 (764)
T ss_pred HHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEE
Confidence 999999999998999999999999999999999999999999998765 578999999999999999999999999999
Q ss_pred EEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCC
Q 002898 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (869)
Q Consensus 239 ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (869)
|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 313 iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPt 392 (764)
T PRK12326 313 LINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPP 392 (764)
T ss_pred EEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH
Q 002898 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (869)
Q Consensus 319 ~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia 398 (869)
|+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.||.+|++.||+|+|||| +++++||+||+
T Consensus 393 nkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA--k~~~~EA~IIa 470 (764)
T PRK12326 393 NKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA--KNDAEEARIIA 470 (764)
T ss_pred CCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc--CchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred HcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 002898 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (869)
Q Consensus 399 ~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (869)
+||++|+||||||||||||||+|||||+
T Consensus 471 ~AG~~gaVTIATNMAGRGTDIkLg~~~~---------------------------------------------------- 498 (764)
T PRK12326 471 EAGKYGAVTVSTQMAGRGTDIRLGGSDE---------------------------------------------------- 498 (764)
T ss_pred hcCCCCcEEEEecCCCCccCeecCCCcc----------------------------------------------------
Confidence 9999999999999999999999999875
Q ss_pred HHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcC
Q 002898 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (869)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (869)
+++++|+++|
T Consensus 499 ----------------------------------------------------------------------~~~~~V~~~G 508 (764)
T PRK12326 499 ----------------------------------------------------------------------ADRDRVAELG 508 (764)
T ss_pred ----------------------------------------------------------------------cchHHHHHcC
Confidence 1247899999
Q ss_pred CeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHH
Q 002898 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGL 638 (869)
Q Consensus 559 GL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 638 (869)
||||||||||||+|||||||||||||||||||+||||||||||+.|| +++ + .+.++++++||++++++++|++|
T Consensus 509 GLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~~~f~--~~~--~--~~~~~~~~~~i~~~~~~~~i~~a 582 (764)
T PRK12326 509 GLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAANL--AGE--K--LPAQPDEDGRITSPKAADLVDHA 582 (764)
T ss_pred CcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHHHhcC--chh--h--hhcCCCCCCcCcChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 774 2 23477889999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHH
Q 002898 639 QISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLK 718 (869)
Q Consensus 639 Q~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~ 718 (869)
|++||++||++||++++||+|||.||++||++|++||++ +++.+. + ..
T Consensus 583 Qk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~--~~~~~~------------~------------------~~ 630 (764)
T PRK12326 583 QRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT--DTAWEE------------L------------------AE 630 (764)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ChHHHH------------H------------------HH
Confidence 999999999999999999999999999999999999954 344322 0 00
Q ss_pred HHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccc
Q 002898 719 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 798 (869)
Q Consensus 719 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 798 (869)
.+.
T Consensus 631 ~~~----------------------------------------------------------------------------- 633 (764)
T PRK12326 631 LAP----------------------------------------------------------------------------- 633 (764)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 799 ATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 799 ~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
..|..+ ...++++.++++||.++|++||.+|++||++|++||++|+||+|||+
T Consensus 634 ---------------~~~~~~--~~~~~~~~~~~~~r~~~L~~iD~~W~ehl~~m~~Lr~~I~lr~y~q~ 686 (764)
T PRK12326 634 ---------------ERYAEL--AEEVDEEVLEQAARQIMLYHLDRGWADHLAYLADVRESIHLRALGRQ 686 (764)
T ss_pred ---------------HHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccC
Confidence 000000 11235668999999999999999999999999999999999999997
No 11
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-189 Score=1649.69 Aligned_cols=669 Identities=48% Similarity=0.767 Sum_probs=635.7
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
||||+||++|+++||.|.|+||+|||||||+++||+|++||.|++|||||+|||||+||++||+|+|+|||||||++.++
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~ 158 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAG 158 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
|++++|+++|+||||||||++||||||||||+.+.++.||| +++|+||||||||||||||||||||||....+.+|.
T Consensus 159 m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr---~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~ 235 (822)
T COG0653 159 MSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQR---GLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYK 235 (822)
T ss_pred CChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhc---cCCeEEEcchhheeeeccccceeeecccccCchHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999999999998888889999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEECCeEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~i 239 (869)
.++.++..|....||++|++.|+++||++|+.++|++|++.+||+.++ .+.|++++||+|+.+|.+|+||||+||+|+|
T Consensus 236 ~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~I 315 (822)
T COG0653 236 KVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVI 315 (822)
T ss_pred HHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEE
Confidence 999999999988899999999999999999999999999999999866 5899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002898 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (869)
Q Consensus 240 vDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (869)
||+||||+|+||+||+|||||||||||++|+++|+|+|+||||||||+|++++||||||.|++.||.++||++|++||||
T Consensus 316 vD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTn 395 (822)
T COG0653 316 VDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTN 395 (822)
T ss_pred EecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH
Q 002898 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (869)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~ 399 (869)
+|++|+|++|.+|.|..+||.|++++|..+|.+||||||||.|++.||.+|+.|.+.||||+|||| +||++||+||++
T Consensus 396 rp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNA--k~h~~EA~Iia~ 473 (822)
T COG0653 396 RPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNA--KNHAREAEIIAQ 473 (822)
T ss_pred CcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecc--ccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002898 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (869)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (869)
||++|+||||||||||||||+|||||+
T Consensus 474 AG~~gaVTiATNMAGRGTDIkLg~~~~----------------------------------------------------- 500 (822)
T COG0653 474 AGQPGAVTIATNMAGRGTDIKLGGNPE----------------------------------------------------- 500 (822)
T ss_pred cCCCCccccccccccCCcccccCCCHH-----------------------------------------------------
Confidence 999999999999999999999998642
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (869)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (869)
.|.++||
T Consensus 501 -------------------------------------------------------------------------~V~~lGG 507 (822)
T COG0653 501 -------------------------------------------------------------------------FVMELGG 507 (822)
T ss_pred -------------------------------------------------------------------------HHHHhCC
Confidence 4889999
Q ss_pred eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHH
Q 002898 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (869)
Q Consensus 560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (869)
|||||||||||||||||||||||||||||+|+||+||||+||++|| ++++..+|.++++.+++||+|++++++|++||
T Consensus 508 L~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F~--~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQ 585 (822)
T COG0653 508 LHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFA--SDRLPALMDKLGLKEGEAIESKMVTRAVERAQ 585 (822)
T ss_pred cEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHHHHHHhc--chhhHHHHHhhcCCccCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Q 002898 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (869)
Q Consensus 640 ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~ 719 (869)
++||++||++||++++||+|||.||++||++|+++|.. .|+++.+..|++++++.++..+.+.....+.||+++|.++
T Consensus 586 k~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~--~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~l~~~ 663 (822)
T COG0653 586 RKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEA--LDLSEFISKMIEDVIKALVGEYIPPPQQAELWDLEGLIDE 663 (822)
T ss_pred HHHHhcCCcHHhhHHHHhHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999965 6899999999999999999999887777789999999988
Q ss_pred HHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002898 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (869)
Q Consensus 720 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 799 (869)
+...+.... .++.|.. ...
T Consensus 664 l~~~~~~~~--------------------------------------------------~~~~~~~-----------~~~ 682 (822)
T COG0653 664 LKGTVHPDL--------------------------------------------------PINKSDL-----------EDE 682 (822)
T ss_pred HhhhcCccc--------------------------------------------------hhHHHhh-----------hcc
Confidence 764322100 0011100 011
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 800 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 800 ~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
+.+++++.+.+.+.+.|..+. . .+++.|+.|||.++|+.||..|++||+.||+||++|+||+|||+
T Consensus 683 ~~~~l~e~i~~~~~~~~~~k~--~-~~~~~~~~~~r~v~l~~iD~~W~ehl~~md~Lr~~I~lR~y~qk 748 (822)
T COG0653 683 AEEELAERILKAADEAYDKKE--E-VGPEAMREFERYVMLQVLDYLWREHLDAMDALREGIHLRGYAQK 748 (822)
T ss_pred cHHHHHHHHHHHHHHHHHhhh--c-cCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHhccC
Confidence 457889999999999997763 3 78999999999999999999999999999999999999999997
No 12
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.7e-186 Score=1633.88 Aligned_cols=666 Identities=46% Similarity=0.733 Sum_probs=627.8
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++||++||+|+||||+||||||||++||+|++||.|++|||||||+|||+||++||+|+|++|||+|++++++
T Consensus 79 ~~~~dvQlig~l~l~~G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~ 158 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNS 158 (796)
T ss_pred CCCchhHHHHHHHHhcCCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.||||||||++||||||||||+.++++.|+| +++|||||||||||||+|+||||||||.+...++|.
T Consensus 159 ~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r---~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~ 235 (796)
T PRK12906 159 MSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQR---PLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYI 235 (796)
T ss_pred CCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhcc---CcceeeeccchheeeccCCCceecCCCCCcchHHHH
Confidence 99999999999999999999999999999999988899998 999999999999999999999999999998889999
Q ss_pred HHHHHHHHcccCC-----------CeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCc
Q 002898 161 VAAKVAELLVQGL-----------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDV 228 (869)
Q Consensus 161 ~~~~~~~~l~~~~-----------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~ 228 (869)
.++.++..|.++. ||.+|++.++++||++|+.++|.++++.++|+..+ .|.+||.+||+|+++|++|+
T Consensus 236 ~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~ 315 (796)
T PRK12906 236 RADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDI 315 (796)
T ss_pred HHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999998764 99999999999999999999999999999998765 68999999999999999999
Q ss_pred ceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHH
Q 002898 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (869)
Q Consensus 229 dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~i 308 (869)
||||+||+|+|||++|||+|+||+||+||||||||||||+|+|++.|+|+|||||||++|++|+||||||++++.||+++
T Consensus 316 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~i 395 (796)
T PRK12906 316 DYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREI 395 (796)
T ss_pred cEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCc
Q 002898 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (869)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~ 388 (869)
||++|++||||+|++|+|+||.||.|..+||.+|++++.++|.+||||||||+|++.||.||..|++.|++|++||| +
T Consensus 396 Y~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna--~ 473 (796)
T PRK12906 396 YNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA--K 473 (796)
T ss_pred hCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred chhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcch
Q 002898 389 YAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSS 468 (869)
Q Consensus 389 ~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (869)
++++|++||++||++|+||||||||||||||+||
T Consensus 474 ~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~---------------------------------------------- 507 (796)
T PRK12906 474 NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLG---------------------------------------------- 507 (796)
T ss_pred cHHHHHHHHHhcCCCceEEEEeccccCCCCCCCC----------------------------------------------
Confidence 7899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhcccccc
Q 002898 469 SLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCS 548 (869)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (869)
T Consensus 508 -------------------------------------------------------------------------------- 507 (796)
T PRK12906 508 -------------------------------------------------------------------------------- 507 (796)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCC-CCCCccc
Q 002898 549 NEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITN-DEDMPIE 627 (869)
Q Consensus 549 ~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~-~~~~~i~ 627 (869)
++|.++||||||+|+||||+|||+|++||||||||||+|+||+||||+||+.|| ++++.++|.++++ ++++||+
T Consensus 508 ---~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~--~~~~~~~~~~~~~~~~~~~i~ 582 (796)
T PRK12906 508 ---PGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFG--SDRVKAFLDRLGMNDDDQVIE 582 (796)
T ss_pred ---cchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhC--cHHHHHHHHHcCCCCCCCccc
Confidence 368889999999999999999999999999999999999999999999999999 9999999999999 8899999
Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002898 628 GDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKH 707 (869)
Q Consensus 628 ~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~ 707 (869)
+++++++|++||+++|++||++||++++||+|||.||++||++|++||+++ +++.+.|.+|++++|+.+++.+.++.
T Consensus 583 ~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~~-~~l~~~i~~~~~~~i~~~i~~~~~~~-- 659 (796)
T PRK12906 583 SRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINED-KDLKEVLMPMIKRTVDRQVQMYTQGD-- 659 (796)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 999999999999999999999999999999999999999999999999652 48999999999999999999987544
Q ss_pred CCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhc
Q 002898 708 PRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAIC 787 (869)
Q Consensus 708 ~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 787 (869)
+++||+++|...+...+... ..+++ ..
T Consensus 660 ~~~w~~~~L~~~l~~~~~~~-----~~~~~------------------------------~~------------------ 686 (796)
T PRK12906 660 KKDWDLDALRDFIVSAMPDE-----ETFDF------------------------------ED------------------ 686 (796)
T ss_pred hhhccHHHHHHHHHHHcCcc-----cCCCH------------------------------HH------------------
Confidence 67899999988776432100 00000 00
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcc
Q 002898 788 SDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYD-DVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYF 866 (869)
Q Consensus 788 ~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~-~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~ 866 (869)
..+.+.++++++|.+.+.+.|..|. ..++ ++.++++||.++|++||.+|++||++|++||+||+||+||
T Consensus 687 --------~~~~~~eel~~~L~~~~~~~Y~~K~--~~lg~~e~~~~~eR~i~L~~ID~~W~eHL~~md~LRegI~LR~yg 756 (796)
T PRK12906 687 --------LKGKSPEELKKRLLDIVEDNYAEKE--KQLGDPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYG 756 (796)
T ss_pred --------HccCCHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 0123457889999999999998774 3456 8899999999999999999999999999999999999999
Q ss_pred cc
Q 002898 867 SQ 868 (869)
Q Consensus 867 q~ 868 (869)
||
T Consensus 757 Qk 758 (796)
T PRK12906 757 QL 758 (796)
T ss_pred cC
Confidence 97
No 13
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.5e-180 Score=1579.92 Aligned_cols=667 Identities=40% Similarity=0.594 Sum_probs=612.5
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+||+||++|++++++|.||||+||||||++|+||+++++|.|++|||||||+|||.||+++|+++|+++|++|++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG 172 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSG 172 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHh-hccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~-l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~ 159 (869)
++.++++.+|.|||+||||++||||||+|+ +..+..+.||| +++|+||||||||||||||||||||||.+..+.+|
T Consensus 173 ~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr---~~~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y 249 (970)
T PRK12899 173 SPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGR---GFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVY 249 (970)
T ss_pred CCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcc---cccEEEEechhhhhhhccCCceeeeCCCccccHHH
Confidence 999999999999999999999999999999 77777778998 99999999999999999999999999999998888
Q ss_pred HHHHHHHHHc-------------------------------------------------------------cc-------
Q 002898 160 PVAAKVAELL-------------------------------------------------------------VQ------- 171 (869)
Q Consensus 160 ~~~~~~~~~l-------------------------------------------------------------~~------- 171 (869)
..++.++..| .+
T Consensus 250 ~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 329 (970)
T PRK12899 250 FELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEGISEACRSLWLVSKGMPLNRVLRRVREHPDLRAM 329 (970)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhhhccccchhhhhhhhcccchhhh
Confidence 8777554443 11
Q ss_pred ----------------------CCCeEEeCCCCeeeccHhhHHHH--------HHHh---------ccC--CCCCC----
Q 002898 172 ----------------------GLHYTVELKNNSVELTEEGIALA--------EMAL---------ETN--DLWDE---- 206 (869)
Q Consensus 172 ----------------------~~~y~~d~~~k~v~Lt~~G~~~~--------e~~~---------~~~--~L~~~---- 206 (869)
+.||.+|++.++++||++|+.++ |.++ +++ +++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~ 409 (970)
T PRK12899 330 IDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVEKAGGSAEDFVMMDMGHEYALIEEDETLSPADKI 409 (970)
T ss_pred hhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhhhccCCHHHHhccchhhhhhccccccccCHHHhh
Confidence 23899999999999999999885 6666 552 43332
Q ss_pred ------------CCcHHHHHHHHHHHHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcc
Q 002898 207 ------------NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV 274 (869)
Q Consensus 207 ------------~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~ 274 (869)
+..+.|+|.+||+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|+++++
T Consensus 410 ~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~ 489 (970)
T PRK12899 410 NRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQ 489 (970)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCce
Confidence 23588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCC
Q 002898 275 VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354 (869)
Q Consensus 275 t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~gr 354 (869)
|+|+|||||||++|++|+||||||++++.||+++||++|++||||+|++|+|+||.||.|..+||.||+++|.++|++||
T Consensus 490 t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~gr 569 (970)
T PRK12899 490 TFATVTLQNFFRLYEKLAGMTGTAITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGN 569 (970)
T ss_pred eeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHH
Q 002898 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIE 434 (869)
Q Consensus 355 PVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~ 434 (869)
||||||.|++.||.||.+|.+.||+|+|||| +++++||+||++||++|+||||||||||||||+||
T Consensus 570 PvLigt~si~~se~ls~~L~~~gi~h~vLNa--k~~~~Ea~iia~AG~~g~VTIATNmAGRGTDIkl~------------ 635 (970)
T PRK12899 570 PILIGTESVEVSEKLSRILRQNRIEHTVLNA--KNHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD------------ 635 (970)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCCcceeccc--chhhhHHHHHHhcCCCCcEEEeeccccCCcccccC------------
Confidence 9999999999999999999999999999999 68999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHH
Q 002898 435 DRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKE 514 (869)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (869)
T Consensus 636 -------------------------------------------------------------------------------- 635 (970)
T PRK12899 636 -------------------------------------------------------------------------------- 635 (970)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEE
Q 002898 515 LQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 594 (869)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~l 594 (869)
++|+++|||||||||||||+|||||||||||||||||||+|||
T Consensus 636 -------------------------------------~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 636 -------------------------------------EEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred -------------------------------------chHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE
Confidence 4788999999999999999999999999999999999999999
Q ss_pred eccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002898 595 SLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSI 674 (869)
Q Consensus 595 SleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~i 674 (869)
||||+||+.|| ++++.++|+++++++++||++++++++|++||++||++||++||++++||+|||.||++||++|+.|
T Consensus 679 SlEDdL~~~f~--~~~i~~~~~~~~~~~~~~I~~~~~~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~i 756 (970)
T PRK12899 679 SFEDRLMRLFA--SPKLNTLIRHFRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDV 756 (970)
T ss_pred EcchHHHHHhC--cHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhccccccccc
Q 002898 675 LTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSID 754 (869)
Q Consensus 675 L~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (869)
|++ +++.+.+.+|++++++.+++.+..+. .+++|++++|...+...++. .+++.
T Consensus 757 L~~--~~~~~~i~~~~~~~i~~~v~~~~~~~-~~~~~~~~~L~~~l~~~~~~-------~~~~~---------------- 810 (970)
T PRK12899 757 LHA--EDIFVVAKEIIEHVALMLASLILKDR-HADGCSLPKLEEWLSYSFPV-------KLDDQ---------------- 810 (970)
T ss_pred HcC--CcHHHHHHHHHHHHHHHHHHHhcCcc-chhhccHHHHHHHHHHhcCC-------CCCHH----------------
Confidence 954 58999999999999999999987654 36779999998777542110 00000
Q ss_pred ccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhc----------
Q 002898 755 INNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESR---------- 824 (869)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~---------- 824 (869)
.+. ...+.++++++|.+.+...|..|.....
T Consensus 811 --------------~~~-------------------------~~~~~e~l~~~l~~~~~~~y~~k~~~l~~~~~~~~~~~ 851 (970)
T PRK12899 811 --------------ELR-------------------------RLGDTDAIAEKIADLLIEAFQVKFSSMVAEFTEAIGEA 851 (970)
T ss_pred --------------HHh-------------------------ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcc
Confidence 000 0123577899999999999987754331
Q ss_pred -CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 825 -YDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 825 -~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
.+++.++++||.++|++||.+|++||++|++||+||+||+||||
T Consensus 852 ~~~~e~~~~~er~i~L~~ID~~W~eHL~~md~LRe~I~lR~ygQk 896 (970)
T PRK12899 852 VDAQGICNDILRSVMIMHIDEQWKIHLVDMDLLRSEVGLRTVGQK 896 (970)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 12568999999999999999999999999999999999999997
No 14
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=7.1e-179 Score=1558.11 Aligned_cols=666 Identities=53% Similarity=0.825 Sum_probs=627.2
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++|+++||+|+||||+||||||++|+||+|++||.|++|||||||+|||+||++||++||++|||+|++++++
T Consensus 55 ~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~ 134 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSG 134 (745)
T ss_pred CCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.|||+||||++||||||||+|+...+..+++ +++|||||||||||+|+||+||+|||+.+.+..+|.
T Consensus 135 ~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r---~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~ 211 (745)
T TIGR00963 135 MSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQR---PFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYL 211 (745)
T ss_pred CCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhcc---ccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHH
Confidence 99999999999999999999999999999998887788888 999999999999999999999999999888888999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCC-CcHHHHHHHHHHHHHHhccCcceEEECCeEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEN-DPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~-~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~i 239 (869)
.+..+++.|.++.||.+|++.++++||++|+.++|++++++++|+.. ..|.+||.+||+|+++|++|+||||+||+|+|
T Consensus 212 ~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~i 291 (745)
T TIGR00963 212 QANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVI 291 (745)
T ss_pred HHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 99999999998899999999999999999999999999999999974 47999999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002898 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (869)
Q Consensus 240 vDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (869)
||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|++||||
T Consensus 292 vD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn 371 (745)
T TIGR00963 292 VDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTN 371 (745)
T ss_pred EECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH
Q 002898 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (869)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~ 399 (869)
+|++|+|+||.||.|..+||.||+++|.++|++||||||||+|++.||.++..|++.|++|++|||+ ++++|++|++.
T Consensus 372 kp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ 449 (745)
T TIGR00963 372 RPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQ 449 (745)
T ss_pred CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 89999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002898 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (869)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (869)
||++|+||||||||||||||+++
T Consensus 450 ag~~g~VtIATnmAgRGtDI~l~--------------------------------------------------------- 472 (745)
T TIGR00963 450 AGRKGAVTIATNMAGRGTDIKLE--------------------------------------------------------- 472 (745)
T ss_pred cCCCceEEEEeccccCCcCCCcc---------------------------------------------------------
Confidence 99999999999999999999873
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (869)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (869)
+|.++||
T Consensus 473 -------------------------------------------------------------------------~V~~~GG 479 (745)
T TIGR00963 473 -------------------------------------------------------------------------EVKELGG 479 (745)
T ss_pred -------------------------------------------------------------------------chhhcCC
Confidence 5788999
Q ss_pred eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHH
Q 002898 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (869)
Q Consensus 560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (869)
||||+|++|||+|+|+|++||||||||||+|+||+|+||+||+.|| ++++.++|+++++++++||++++++++|++||
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ 557 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFG--GDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhh--hHHHHHHHHHcCCCCCceeecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Q 002898 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (869)
Q Consensus 640 ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~ 719 (869)
+++|++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++|+.+++.+.++...+++||+++|...
T Consensus 558 ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 635 (745)
T TIGR00963 558 KRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES--EDLSELILQMLESTLDEIVDAYINEQKPSEEWDLEGLIEK 635 (745)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHH
Confidence 99999999999999999999999999999999999954 5899999999999999999998866656788999999887
Q ss_pred HHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002898 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (869)
Q Consensus 720 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 799 (869)
+...+.. . ..+++ ..| ...
T Consensus 636 ~~~~~~~--~---~~~~~-------------------------------------------~~~-------------~~~ 654 (745)
T TIGR00963 636 LKTLFLL--D---GDLTP-------------------------------------------EDL-------------ENL 654 (745)
T ss_pred HHHHhCc--c---CCCCH-------------------------------------------HHH-------------cCC
Confidence 7643210 0 00000 000 112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 800 TTNLLRKYLGDILIASYLNVVQESRYDDV---YMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 800 ~~~~l~~~L~e~~~~~y~~k~~~~~~~~e---~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
+.+++++++.+.+.+.|..|.. .++++ .+++|||.++|++||.+|++||++||+||++|+||+||||
T Consensus 655 ~~~~~~~~l~~~~~~~~~~k~~--~~~~~~~~~~~~~er~~~L~~iD~~W~~hl~~m~~Lr~~i~lr~y~q~ 724 (745)
T TIGR00963 655 TSEDLKELLLEKIRAAYDEKEA--ELESERPGLMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQK 724 (745)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccC
Confidence 4567899999999999987643 35555 7999999999999999999999999999999999999997
No 15
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.4e-171 Score=1499.35 Aligned_cols=660 Identities=39% Similarity=0.598 Sum_probs=611.6
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
||||+||++|++++|+|.|+||+||||||++|++|+++++|.|++|||||||+|||+||++||++||++||++|++++++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~ 148 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVD 148 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred -----CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCC
Q 002898 81 -----MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (869)
Q Consensus 81 -----~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~ 155 (869)
+++++|+.+|+|||+||||++|+||||+|+|+.+....++| +++|+|||||||||||+|+|||||||++..+
T Consensus 149 s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r---~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 149 DPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLR---PFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred CCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccc---cCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 77889999999999999999999999999999887778888 9999999999999999999999999999988
Q ss_pred cccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEEC
Q 002898 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRN 234 (869)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d 234 (869)
+.+|..++.+++.|.++.||.+|++.++++||++|+.++|++|++.+||++.+ .+.+||.+||+|+++|++|+||||+|
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 89999999999999998999999999999999999999999999999998754 68999999999999999999999999
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002898 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (869)
Q Consensus 235 ~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 314 (869)
|+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHH
Q 002898 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (869)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea 394 (869)
+||||+|++|+|+||.||.+..+||.+++++++++|.+||||||||+|++.|+.++..|.+.|++|.+|||+ ++++|+
T Consensus 386 ~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~--~~~~E~ 463 (762)
T TIGR03714 386 KIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ--NAAKEA 463 (762)
T ss_pred EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC--ChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 678999
Q ss_pred HHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002898 395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474 (869)
Q Consensus 395 ~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (869)
+++++||++|+||||||||||||||+||
T Consensus 464 ~ii~~ag~~g~VlIATdmAgRGtDI~l~---------------------------------------------------- 491 (762)
T TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG---------------------------------------------------- 491 (762)
T ss_pred HHHHHcCCCCeEEEEccccccccCCCCC----------------------------------------------------
Confidence 9999999999999999999999999998
Q ss_pred HHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhh
Q 002898 475 KAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEV 554 (869)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 554 (869)
++|
T Consensus 492 -----------------------------------------------------------------------------~~v 494 (762)
T TIGR03714 492 -----------------------------------------------------------------------------KGV 494 (762)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 368
Q ss_pred hhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCC----Ccccchh
Q 002898 555 KRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDED----MPIEGDA 630 (869)
Q Consensus 555 ~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~----~~i~~~~ 630 (869)
+++||||||+|++|+|+|+|+|++||||||||||+|+||+|+||+||+.|| ++++.++|++++++++ +||++++
T Consensus 495 ~~~GGL~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 572 (762)
T TIGR03714 495 AELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWS--PSWLKKYYKKYSVKDSKLKPSALFKRR 572 (762)
T ss_pred cccCCeEEEEecCCCCcHHHHHhhhcccCCCCceeEEEEEccchhhhhhcc--hHHHHHHHHHcCCCcccccCcccccHH
Confidence 899999999999999999999999999999999999999999999999999 9999999999998765 8999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 002898 631 IVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANES-CSQQIFQYMQAVVDEIIFGNVDPLKHPR 709 (869)
Q Consensus 631 ~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~d-i~e~i~~~i~~~i~~iv~~~~~~~~~~~ 709 (869)
++++|++||+++|++||++||++++||+|||.||++||++|++||++ ++ +.+.+.+|++++++.+++.+..+ +
T Consensus 573 ~~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 646 (762)
T TIGR03714 573 FRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG--SDFLDDDVDQIIDDVFNMYAEEQDLS----N 646 (762)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhccc----c
Confidence 99999999999999999999999999999999999999999999954 46 89999999999999999877321 1
Q ss_pred cccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccc
Q 002898 710 YWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789 (869)
Q Consensus 710 ~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 789 (869)
. ++|...+...+. +.. +.|+..
T Consensus 647 ~---~~l~~~~~~~~~---------~~~-------------------------------------------~~~~~~--- 668 (762)
T TIGR03714 647 K---SLLKRFILENLS---------YQF-------------------------------------------KNDPDE--- 668 (762)
T ss_pred H---HHHHHHHHHHcC---------CCh-------------------------------------------hhhhhh---
Confidence 1 344444432210 000 000000
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDD-VYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 790 ~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~-e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
....+.+++++++.+.+...|..|.. .+++ +.++++||.++|++||.+|++||++||+||+||+||+||||
T Consensus 669 ------~~~~~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~~~~~r~~~L~~iD~~W~~hl~~m~~lr~~i~lr~~~q~ 740 (762)
T TIGR03714 669 ------FDLKNKEAIKDFLKEIADKELSEKKK--VLNNDYLFNDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQR 740 (762)
T ss_pred ------hccCCHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 00123567899999999999987643 3444 68999999999999999999999999999999999999997
No 16
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.7e-171 Score=1509.89 Aligned_cols=661 Identities=41% Similarity=0.658 Sum_probs=624.6
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+|||||++|++++|+|+||||+||||||++|+||++++||.|++|||||||+|||+||++||+++|++|||+|++++++
T Consensus 77 ~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~ 156 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSD 156 (790)
T ss_pred CCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccH
Q 002898 81 MI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARY 159 (869)
Q Consensus 81 ~~-~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~ 159 (869)
++ +++|+.+|.|||+||||++||||||||+|..++...++| +++|||||||||||||+|+|||||||+.+.++.+|
T Consensus 157 ~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r---~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y 233 (790)
T PRK09200 157 IDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQR---PLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLY 233 (790)
T ss_pred CCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhccc---ccceEEEeccccceeccCCCceeeeCCCccccHHH
Confidence 99 999999999999999999999999999998877778888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEECCeEE
Q 002898 160 PVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (869)
Q Consensus 160 ~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ 238 (869)
..++.++..|.++.||.+|++.++++||++|+.++|.++++.+||+..+ .+.+||.+||+|+++|++|+||||+||+|+
T Consensus 234 ~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ 313 (790)
T PRK09200 234 HIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIV 313 (790)
T ss_pred HHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEE
Confidence 9999999999988899999999999999999999999999999998754 688999999999999999999999999999
Q ss_pred EEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCC
Q 002898 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (869)
Q Consensus 239 ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (869)
|||++|||+|+||+||+||||||||||||+|++++.|+|+|||||||++|++|+||||||+++++||+++||++|++|||
T Consensus 314 ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt 393 (790)
T PRK09200 314 LVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT 393 (790)
T ss_pred EEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH
Q 002898 319 NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA 398 (869)
Q Consensus 319 ~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia 398 (869)
|+|++|+|+||.||.+..+|+.++++++.+.|.+||||||||+|++.|+.++..|.+.|++|.+|||+ ++++|+.+++
T Consensus 394 ~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~--~~~~e~~~i~ 471 (790)
T PRK09200 394 NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAK--NAAKEAQIIA 471 (790)
T ss_pred CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCC--ccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999994 5689999999
Q ss_pred HcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHH
Q 002898 399 QAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAAL 478 (869)
Q Consensus 399 ~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (869)
+||++|+||||||||||||||+||
T Consensus 472 ~ag~~g~VlIATdmAgRG~DI~l~-------------------------------------------------------- 495 (790)
T PRK09200 472 EAGQKGAVTVATNMAGRGTDIKLG-------------------------------------------------------- 495 (790)
T ss_pred HcCCCCeEEEEccchhcCcCCCcc--------------------------------------------------------
Confidence 999999999999999999999998
Q ss_pred HHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcC
Q 002898 479 LAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLG 558 (869)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 558 (869)
++|.++|
T Consensus 496 -------------------------------------------------------------------------~~V~~~G 502 (790)
T PRK09200 496 -------------------------------------------------------------------------EGVHELG 502 (790)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 4688999
Q ss_pred CeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCC---CCcccchhHHHHH
Q 002898 559 GLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDE---DMPIEGDAIVRQL 635 (869)
Q Consensus 559 GL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~i 635 (869)
|||||+|++|+|+|+++|++|||||||+||+|+||+|+||+||+.|| ++++.++|.++++++ ++||++++++++|
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFA--PEELEKLKKKLKTDAQRLTGLLFNRKVHKIV 580 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhc--cHHHHHHHHHcCCccccCCcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999888 8999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHH
Q 002898 636 LGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDK 715 (869)
Q Consensus 636 ~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~ 715 (869)
++||+++|++||++||++++||+|||.||++||++|++||.++..++.+.+..|++++++.+++.+..+...+++|++++
T Consensus 581 ~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (790)
T PRK09200 581 VKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDDRDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYEN 660 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHhcCCccChhhhcHHH
Confidence 99999999999999999999999999999999999999997654589999999999999999999876555567899999
Q ss_pred HHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccc
Q 002898 716 LLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNG 795 (869)
Q Consensus 716 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 795 (869)
+.+.+...+.. + .
T Consensus 661 ~~~~~~~~~~~--------~-----------------------~------------------------------------ 673 (790)
T PRK09200 661 LSFQLNEILSN--------T-----------------------N------------------------------------ 673 (790)
T ss_pred HHHHHHHHhcc--------c-----------------------c------------------------------------
Confidence 98777532110 0 0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 796 RYRATTNLLRKYLGDILIASYLNVVQESRYDDV-YMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 796 ~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e-~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
. .+.++++++|.+.+.+.|..|.+ .++++ .+++|||.++|++||.+|++||++|++||+||+||+||||
T Consensus 674 ~--~~~~~~~~~l~~~~~~~y~~k~~--~lg~e~~~~e~eR~i~L~~ID~~W~eHLd~Md~LRegI~LRsYgQK 743 (790)
T PRK09200 674 F--PDKKEVVQFLLEEAEKQLKEKRN--KLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQR 743 (790)
T ss_pred c--CCHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 0 02356788899999999987643 34444 7999999999999999999999999999999999999997
No 17
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.7e-145 Score=1269.00 Aligned_cols=524 Identities=47% Similarity=0.700 Sum_probs=505.9
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+|||||++|+++||+|+||||+||||||++|+||++++++.|++|||||||+|||.||++||++||++|||+|++++++
T Consensus 102 ~~p~~VQ~~~~~~ll~G~Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg 181 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVED 181 (656)
T ss_pred CCCChHHHHHHHHHhCCCeeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhcc-------------------chhhhhccCCCCceEEEeechhhhhhhc
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAA-------------------NSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~-------------------~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (869)
+++++|+.+|+|||+||||++||||||||||+. +.++.++| +++||||||||||||||
T Consensus 182 ~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 182 QSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR---GLHFAIVDEADSVLIDE 258 (656)
T ss_pred CCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc---ccceeEeecccceeecc
Confidence 999999999999999999999999999999987 55678888 99999999999999999
Q ss_pred CCCceeecCCCCCC--cccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhcc-CCCCCCCCcHHHHHHHHH
Q 002898 142 GRNPLLISGEASKD--VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDENDPWARFVMNAL 218 (869)
Q Consensus 142 a~tPLiiSg~~~~~--~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~~~~~~i~~Al 218 (869)
|+|||||||+.... .++|..+..++..|.++.||++|+++++++||+.|..++|+++++ .++|+....+.+||++||
T Consensus 259 artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 259 ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 99999999998766 578999999999999989999999999999999999999999987 789988777999999999
Q ss_pred HHHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCc
Q 002898 219 KAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTA 298 (869)
Q Consensus 219 ~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa 298 (869)
+|+++|++|+||||+||+|+|||++|||+|+||+||+||||||||||||+|++++.|+|+|||||||++|++|+|||||+
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCC
Q 002898 299 KTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGI 378 (869)
Q Consensus 299 ~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi 378 (869)
+++++||.++|+++|++||||+|++|+++++.+|.+..+||.+|++++.+.+.+|+||||||+|++.|+.++..|.+.|+
T Consensus 419 ~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi 498 (656)
T PRK12898 419 REVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGL 498 (656)
T ss_pred hHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcc
Q 002898 379 PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPK 458 (869)
Q Consensus 379 ~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (869)
+|.+|||+ ++++|++++++||++|.||||||||||||||+++
T Consensus 499 ~~~~Lhg~--~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~------------------------------------ 540 (656)
T PRK12898 499 PHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------------------ 540 (656)
T ss_pred CEEEeeCC--cHHHHHHHHHHcCCCCcEEEEccchhcccCcCCc------------------------------------
Confidence 99999994 7799999999999999999999999999999987
Q ss_pred hhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhh
Q 002898 459 VLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLS 538 (869)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (869)
T Consensus 541 -------------------------------------------------------------------------------- 540 (656)
T PRK12898 541 -------------------------------------------------------------------------------- 540 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhc
Q 002898 539 VLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRI 618 (869)
Q Consensus 539 ~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~ 618 (869)
++|.++||||||+|++|+|+|+|+|++|||||||+||+|+||+|+||+||+.|+ ++++.+++..+
T Consensus 541 -------------~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~~~--~~~~~~~~~~~ 605 (656)
T PRK12898 541 -------------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFL--GSRGLAIRRME 605 (656)
T ss_pred -------------cchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHhhh--hHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999 99999999998
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 002898 619 TNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEV 662 (869)
Q Consensus 619 ~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~ 662 (869)
++.++ +.++++++++++||+++|++||++||++++||++++.
T Consensus 606 ~~~~~--~~~~~~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~~~~~ 647 (656)
T PRK12898 606 LLGPR--GGRALGALLLRRAQRRAERLHARARRALLHADEQLDK 647 (656)
T ss_pred cCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77543 6699999999999999999999999999999999874
No 18
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=100.00 E-value=1e-63 Score=532.79 Aligned_cols=191 Identities=65% Similarity=1.009 Sum_probs=174.3
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+|||||++|+++||+|+||||+|||||||+++||++++||.|++|||||+|+|||+||++||+|||++|||+|++++++
T Consensus 76 ~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~ 155 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSD 155 (266)
T ss_dssp ----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETT
T ss_pred CcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+++|.|||+|||+++|+||||||++..++...++| +++|||||||||||||+|++||+|||
T Consensus 156 ~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r---~~~~~ivDEvDs~LiDea~~pl~is~---------- 222 (266)
T PF07517_consen 156 MSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQR---GFDFAIVDEVDSILIDEARTPLIISG---------- 222 (266)
T ss_dssp TEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SS---SSSEEEECTHHHHTTTGCCSEEEEEE----------
T ss_pred cCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccC---CCCEEEEeccceEEEecCcccccccc----------
Confidence 99999999999999999999999999999999988778888 99999999999999999999999998
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEECCeEEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~iv 240 (869)
T Consensus 223 -------------------------------------------------------------------------------- 222 (266)
T PF07517_consen 223 -------------------------------------------------------------------------------- 222 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHH
Q 002898 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (869)
Q Consensus 241 De~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 306 (869)
+|||++|+|++.|+++||||+||++|++|+|||||++++++||+
T Consensus 223 ----------------------~Ke~~~i~~~~~t~a~is~q~~f~~Y~~l~GmTGTa~~~~~e~~ 266 (266)
T PF07517_consen 223 ----------------------AKEGLKITPESLTLASISYQNFFRLYPKLSGMTGTAKTEAKEFW 266 (266)
T ss_dssp ----------------------HHTTS----SEEEEEEEEHHHHHTTSSEEEEEESSTGGGHHHHH
T ss_pred ----------------------cccCCccCCCCeEEEEeehHHHHHhcchheeeCCCChhhHhhcC
Confidence 89999999999999999999999999999999999999999996
No 19
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=100.00 E-value=1.1e-35 Score=309.34 Aligned_cols=180 Identities=31% Similarity=0.474 Sum_probs=154.2
Q ss_pred cccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCC
Q 002898 625 PIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDP 704 (869)
Q Consensus 625 ~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~ 704 (869)
||+|++++++|++||++||++||++||++++||+|||.||++||++|++||++ +++.+.+.+|++++|+.+|+.+.++
T Consensus 1 pIe~~~i~~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~i~~~v~~~~~~ 78 (214)
T PF07516_consen 1 PIESKMISKSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG--EDLEEIILEMIEDVIDDIVDEYIPE 78 (214)
T ss_dssp SB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--SCCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHccc
Confidence 79999999999999999999999999999999999999999999999999965 4799999999999999999999988
Q ss_pred CCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhh
Q 002898 705 LKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWL 784 (869)
Q Consensus 705 ~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 784 (869)
..++++||+++|.+.+...++.... ++ +...
T Consensus 79 ~~~~~~~~~~~l~~~l~~~~~~~~~-----~~------------------------------~~~~-------------- 109 (214)
T PF07516_consen 79 KDSPEEWDIEGLKDFLNQNFNLDFD-----IS------------------------------PEDL-------------- 109 (214)
T ss_dssp SSSSTSSCHHHHHHHHHHCSSSSSC-----HC------------------------------SCHH--------------
T ss_pred ccCcccccHHHHHHHHHHHcCCCcc-----hh------------------------------HHHH--------------
Confidence 7677999999999888754321000 00 0000
Q ss_pred hhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 002898 785 AICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNI 864 (869)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~ 864 (869)
....+.++++++|.+.+...|..+ ...++++.++++||.++|++||.+|++||++|++||+||||||
T Consensus 110 -----------~~~~~~~~~~~~l~~~~~~~~~~k--~~~~~~~~~~~~eR~ilL~~ID~~W~~HL~~m~~Lr~~I~lR~ 176 (214)
T PF07516_consen 110 -----------INNKDKEELKKYLFEQVEESYERK--EEEIGEEQFNEFERYILLKAIDQNWKDHLDNMDQLREGIGLRS 176 (214)
T ss_dssp -----------SSSSTCHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCTT
T ss_pred -----------hccCCHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 012355778999999999999775 5567899999999999999999999999999999999999999
Q ss_pred cccc
Q 002898 865 YFSQ 868 (869)
Q Consensus 865 Y~q~ 868 (869)
||||
T Consensus 177 y~Qk 180 (214)
T PF07516_consen 177 YGQK 180 (214)
T ss_dssp SSSS
T ss_pred HccC
Confidence 9997
No 20
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-32 Score=307.25 Aligned_cols=281 Identities=21% Similarity=0.277 Sum_probs=214.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------G~~V~VvT~ndyLA~RDae~~~~ly~~L 70 (869)
.|+|+|..+.+.++.|+ |+..+||+||||+|++|+..+... |..|.|++|+++||.|..+.+..|-..+
T Consensus 113 ~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~ 192 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSL 192 (519)
T ss_pred CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999 999999999999999999977665 4569999999999999999999999999
Q ss_pred CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceee
Q 002898 71 GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (869)
Q Consensus 71 GLsv~~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLii 148 (869)
++++.|++|+.+ +|.+.....+||+.|||+++ .|.+..+ ...++ .+.|+|+||||.|| |+++.|
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl-----~d~le~g--~~~l~---~v~ylVLDEADrMl-dmGFe~--- 258 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRL-----IDLLEEG--SLNLS---RVTYLVLDEADRML-DMGFEP--- 258 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHH-----HHHHHcC--Ccccc---ceeEEEeccHHhhh-ccccHH---
Confidence 999999999976 88888999999999999995 5666543 34566 89999999999997 887766
Q ss_pred cCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCc
Q 002898 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (869)
Q Consensus 149 Sg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~ 228 (869)
++.+++..+++. .+|+. +|+++ |..+|.+. |..++.
T Consensus 259 ------------qI~~Il~~i~~~--------~rQtl-----------------m~saT--wp~~v~~l--A~~fl~--- 294 (519)
T KOG0331|consen 259 ------------QIRKILSQIPRP--------DRQTL-----------------MFSAT--WPKEVRQL--AEDFLN--- 294 (519)
T ss_pred ------------HHHHHHHhcCCC--------cccEE-----------------EEeee--ccHHHHHH--HHHHhc---
Confidence 888999988542 33555 67766 78888854 566654
Q ss_pred ceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHH
Q 002898 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (869)
Q Consensus 229 dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~i 308 (869)
+|+-.+ ++ ... +.| ....|+.
T Consensus 295 ~~~~i~----ig-----~~~-------------~~~----------a~~~i~q--------------------------- 315 (519)
T KOG0331|consen 295 NPIQIN----VG-----NKK-------------ELK----------ANHNIRQ--------------------------- 315 (519)
T ss_pred CceEEE----ec-----chh-------------hhh----------hhcchhh---------------------------
Confidence 444321 11 000 000 0000100
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHH-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCC
Q 002898 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (869)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~-~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~ 387 (869)
...-.+..+|...+...+...+ ..+-+|||||+++..++.|+..|...|+++..||++.
T Consensus 316 --------------------ive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~ 375 (519)
T KOG0331|consen 316 --------------------IVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDK 375 (519)
T ss_pred --------------------hhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccc
Confidence 0011234555555554444433 4556899999999999999999999999999999987
Q ss_pred cchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.|.+|+..+-. +.| .-.|+||||+|+||.||+
T Consensus 376 sQ~eR~~~L~~FreG-~~~vLVATdVAaRGLDi~ 408 (519)
T KOG0331|consen 376 SQSERDWVLKGFREG-KSPVLVATDVAARGLDVP 408 (519)
T ss_pred cHHHHHHHHHhcccC-CcceEEEcccccccCCCc
Confidence 67666654443 455 458999999999999995
No 21
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=7.7e-29 Score=276.10 Aligned_cols=299 Identities=21% Similarity=0.303 Sum_probs=222.5
Q ss_pred CCCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHH------------HHcCCcEEEEecCHHHHHHHHHHHHHH
Q 002898 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLN------------ALTGEGVHVVTVNDYLAQRDAEWMERV 66 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~------------AL~G~~V~VvT~ndyLA~RDae~~~~l 66 (869)
|-|.|+|-++++++++.+ |.-+.||+|||++|.+|+... -..|....|+.|+++||++..++-..|
T Consensus 266 ~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 569999999999988766 888889999999999988632 224778999999999999999999999
Q ss_pred hhhcCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCC
Q 002898 67 HRFLGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (869)
Q Consensus 67 y~~LGLsv~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~t 144 (869)
...||+.|..++++.+-+++ +..-.|+|+.+||+++ .|.|-.+ .+|+. .+.|+++||||.| ||+++.
T Consensus 346 ~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrL-id~Lenr------~lvl~---qctyvvldeadrm-iDmgfE 414 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL-IDSLENR------YLVLN---QCTYVVLDEADRM-IDMGFE 414 (673)
T ss_pred cccccceEEEEecccchhhhhhhhhccceeeecCchHH-HHHHHHH------HHHhc---cCceEeccchhhh-hccccc
Confidence 99999999999999998888 8889999999999996 4555332 46777 9999999999999 599988
Q ss_pred ceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHh
Q 002898 145 PLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFY 224 (869)
Q Consensus 145 PLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~ 224 (869)
| .+..++..|+.... .-| .=+.+|..+ + ...|
T Consensus 415 ~---------------dv~~iL~~mPssn~-k~~------tde~~~~~~------------------------~--~~~~ 446 (673)
T KOG0333|consen 415 P---------------DVQKILEQMPSSNA-KPD------TDEKEGEER------------------------V--RKNF 446 (673)
T ss_pred H---------------HHHHHHHhCCcccc-CCC------ccchhhHHH------------------------H--Hhhc
Confidence 7 67777777753100 000 000011111 1 1111
Q ss_pred ccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHH
Q 002898 225 RRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKE 304 (869)
Q Consensus 225 ~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~E 304 (869)
... +.|..-...|.|.....+-
T Consensus 447 ~~~----------------------------------------------------------k~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 447 SSS----------------------------------------------------------KKYRQTVMFTATMPPAVER 468 (673)
T ss_pred ccc----------------------------------------------------------cceeEEEEEecCCChHHHH
Confidence 111 1123333456666655555
Q ss_pred HHHHh-CCCe-EEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 002898 305 FLKMF-QMPV-IEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (869)
Q Consensus 305 f~~iY-~l~v-v~IPt-~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~ 381 (869)
+.+.| .-+| +.|-+ ++|.-|.. .-+++.++++||.++++-+... ..-|++||.++++.++.|++.|.+.|+.+.
T Consensus 469 lar~ylr~pv~vtig~~gk~~~rve-Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~ 545 (673)
T KOG0333|consen 469 LARSYLRRPVVVTIGSAGKPTPRVE-QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVT 545 (673)
T ss_pred HHHHHhhCCeEEEeccCCCCccchh-eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEE
Confidence 54444 3333 44533 34444433 3466789999999988766553 356899999999999999999999999999
Q ss_pred EeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 382 VLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 382 vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.||+..++.+||-.+-. ++| .+.|.||||.||||+||+
T Consensus 546 tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIp 584 (673)
T KOG0333|consen 546 TLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIP 584 (673)
T ss_pred EeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCC
Confidence 99999888888877666 566 788999999999999995
No 22
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-28 Score=286.27 Aligned_cols=276 Identities=19% Similarity=0.243 Sum_probs=206.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--CC---c-EEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--GE---G-VHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--G~---~-V~VvT~ndyLA~RDae~~~~ly~~L-GL 72 (869)
.|+|||..+++.+++|+ +++.+||+|||++|++|++ ..+. +. . +.|++||++||.|.++.+..+...+ ++
T Consensus 51 ~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l-~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~ 129 (513)
T COG0513 51 EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLL-QKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGL 129 (513)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCc
Confidence 69999999999999999 9999999999999999997 4465 32 2 8999999999999999999999999 89
Q ss_pred eEEEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecC
Q 002898 73 SVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (869)
Q Consensus 73 sv~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg 150 (869)
++.+++|+++...+. ..-++||++|||+++ .|++.. . ...+. ++.++|+||||.|| |++
T Consensus 130 ~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRl-lD~i~~----~--~l~l~---~v~~lVlDEADrmL-d~G-------- 190 (513)
T COG0513 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRL-LDLIKR----G--KLDLS---GVETLVLDEADRML-DMG-------- 190 (513)
T ss_pred cEEEEECCCCHHHHHHHHhcCCCEEEECccHH-HHHHHc----C--Ccchh---hcCEEEeccHhhhh-cCC--------
Confidence 999999998754443 334599999999997 355533 2 24455 89999999999997 665
Q ss_pred CCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcce
Q 002898 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (869)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dY 230 (869)
+.+.+..++..++. ++++. |||++.+- .|.. + |+.++. +.-.
T Consensus 191 -------f~~~i~~I~~~~p~---------~~qtl-----------------lfSAT~~~--~i~~-l-~~~~l~-~p~~ 232 (513)
T COG0513 191 -------FIDDIEKILKALPP---------DRQTL-----------------LFSATMPD--DIRE-L-ARRYLN-DPVE 232 (513)
T ss_pred -------CHHHHHHHHHhCCc---------ccEEE-----------------EEecCCCH--HHHH-H-HHHHcc-CCcE
Confidence 44588888888864 56776 78988643 3443 2 344443 2111
Q ss_pred EEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcc--eeeeeeehhHhhhcCcccccCCCcccHHHHHHHH
Q 002898 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (869)
Q Consensus 231 iV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~--t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~i 308 (869)
+.+.++.. +...|..
T Consensus 233 ------------------------------------i~v~~~~~~~~~~~i~q--------------------------- 249 (513)
T COG0513 233 ------------------------------------IEVSVEKLERTLKKIKQ--------------------------- 249 (513)
T ss_pred ------------------------------------EEEccccccccccCceE---------------------------
Confidence 11111111 3333332
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChh-HHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCC
Q 002898 309 FQMPVIEVPTNLPNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (869)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~-~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~ 387 (869)
..++.... +|+..+...+... ....+||||+|...++.|+..|...|+++..||+++
T Consensus 250 --------------------~~~~v~~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l 307 (513)
T COG0513 250 --------------------FYLEVESEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307 (513)
T ss_pred --------------------EEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 12233333 4777766666432 222599999999999999999999999999999998
Q ss_pred cchhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 388 KYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 388 ~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+.+|+..+-...-..-.|+|||+.|+||+||.
T Consensus 308 ~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 308 PQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 888888777664333668999999999999995
No 23
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=99.96 E-value=5.3e-30 Score=241.35 Aligned_cols=109 Identities=43% Similarity=0.722 Sum_probs=103.2
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhcc-CCCCCCCC-cHHHHHHHHHHHHHHhccCcceE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALET-NDLWDEND-PWARFVMNALKAKEFYRRDVQYI 231 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~-~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYi 231 (869)
.++++|..++++++.|.++.||.+|++.++++||+.|+.+++.++++ .++|+..+ ++.++|.+||+|+++|++|+|||
T Consensus 3 ~~~~~y~~a~~~~~~L~~~~dy~vde~~~~v~LT~~G~~~~e~~~~~~~~l~~~~~~~~~~~i~~AL~A~~l~~rd~dYi 82 (113)
T PF01043_consen 3 DSSNLYREADKFAKQLKEDEDYEVDEKQRTVELTEKGIEKAEKLLGISDNLYDEENSELYHHINQALKAHHLFKRDVDYI 82 (113)
T ss_dssp SCHHHHHHHHHHHHHSHTTTSECECTSTTEEEESHHHHHHHHHHHTSSSSTTSTTCHHHHHHHHHHHHHHHCSTTTTSEE
T ss_pred hhHHHHHHHHHHHHhCCCCCCEEEeCCCCeeeEhHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHHhCCcceE
Confidence 45668999999999999999999999999999999999999999999 99999987 89999999999999999999999
Q ss_pred EECCeEEEEeCCCCccccccccChhhhHHHH
Q 002898 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVE 262 (869)
Q Consensus 232 V~d~~I~ivDe~TGR~~~gr~ws~GLHQaie 262 (869)
|+||+|+|||++|||+||||+||+|||||||
T Consensus 83 V~dg~V~IVDe~TGR~m~gRrws~GLHQaIE 113 (113)
T PF01043_consen 83 VRDGEVVIVDEFTGRIMPGRRWSDGLHQAIE 113 (113)
T ss_dssp EETTEEEEBCTTTTSEBTT--STTTHHHHHH
T ss_pred EEcCEEEEEECCCCCcCCCCcCCchhhHhhC
Confidence 9999999999999999999999999999997
No 24
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=2.2e-27 Score=278.11 Aligned_cols=280 Identities=21% Similarity=0.316 Sum_probs=195.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
.|+++|..+.+++++|+ |+.+.||+|||++|+||++...+. |..|.|++|+++||.|..+++..|...++
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~ 231 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK 231 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC
Confidence 59999999999999998 999999999999999999865442 44689999999999999999999999999
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeec
Q 002898 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (869)
Q Consensus 72 Lsv~~i~~~~~~~--~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (869)
+++.+++++.+.. .+...-.++|+++||+.| .|+|.... ..++ .+.++||||||.|| |.+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL-~d~l~~~~------~~l~---~v~~lViDEAd~ml-d~g------- 293 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRL-IDFLESNV------TNLR---RVTYLVLDEADRML-DMG------- 293 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHH-HHHHHcCC------CChh---hCcEEEeehHHhhh-hcc-------
Confidence 9999999987643 333445689999999987 45554321 2244 79999999999986 543
Q ss_pred CCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcc
Q 002898 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (869)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~d 229 (869)
+.+++..++..+.+ .+++. +|+++ |...+... |+.++..+.
T Consensus 294 --------f~~~i~~il~~~~~---------~~q~l-----------------~~SAT--~p~~v~~l--~~~l~~~~~- 334 (545)
T PTZ00110 294 --------FEPQIRKIVSQIRP---------DRQTL-----------------MWSAT--WPKEVQSL--ARDLCKEEP- 334 (545)
T ss_pred --------hHHHHHHHHHhCCC---------CCeEE-----------------EEEeC--CCHHHHHH--HHHHhccCC-
Confidence 23456666666543 34444 45555 23333322 333432111
Q ss_pred eEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHh
Q 002898 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (869)
Q Consensus 230 YiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY 309 (869)
+. ++. |.+. ++ ....|.
T Consensus 335 -v~-------i~v--g~~~--------------------l~----~~~~i~----------------------------- 351 (545)
T PTZ00110 335 -VH-------VNV--GSLD--------------------LT----ACHNIK----------------------------- 351 (545)
T ss_pred -EE-------EEE--CCCc--------------------cc----cCCCee-----------------------------
Confidence 00 000 0000 00 000000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
....+....+|...+.+.+......+.++||||+|++.++.|+..|...|+++..+|+++.+
T Consensus 352 ------------------q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~ 413 (545)
T PTZ00110 352 ------------------QEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQ 413 (545)
T ss_pred ------------------EEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcH
Confidence 01122344556666665555544478899999999999999999999999999999998777
Q ss_pred hhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+|+..+-. +.| ...|.|||+.|+||+||.
T Consensus 414 ~eR~~il~~F~~G-~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 414 EERTWVLNEFKTG-KSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHHHhcC-CCcEEEEcchhhcCCCcc
Confidence 777654444 445 557999999999999995
No 25
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=260.08 Aligned_cols=277 Identities=22% Similarity=0.248 Sum_probs=206.4
Q ss_pred CCCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC----cEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~----~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.+|.+||.-++|+.|+|+ |+-.+||+|||++|+||++ ++|.+. .+.|+||+++||.|.++.+.+|-..+||.|
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl-~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~ 160 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPIL-QRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRV 160 (476)
T ss_pred CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHH-HHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEE
Confidence 479999999999999999 8889999999999999996 888765 589999999999999999999999999999
Q ss_pred EEEcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 75 GLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 75 ~~i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
.++.||++... ....-..||+++|||++ .|++...+ ..-++ .+.|+|+||||.+| |+-+.
T Consensus 161 ~~lvGG~~m~~q~~~L~kkPhilVaTPGrL-----~dhl~~Tk-gf~le---~lk~LVlDEADrlL-d~dF~-------- 222 (476)
T KOG0330|consen 161 AVLVGGMDMMLQANQLSKKPHILVATPGRL-----WDHLENTK-GFSLE---QLKFLVLDEADRLL-DMDFE-------- 222 (476)
T ss_pred EEEecCchHHHHHHHhhcCCCEEEeCcHHH-----HHHHHhcc-CccHH---HhHHHhhchHHhhh-hhhhH--------
Confidence 99999988543 34556789999999996 44443221 12344 78999999999987 55333
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
+.++.|.+.++. +++.+ ||+++. ...|....+|. + + +. +
T Consensus 223 -------~~ld~ILk~ip~---------erqt~-----------------LfsATM--t~kv~kL~ras-l-~-~p---~ 261 (476)
T KOG0330|consen 223 -------EELDYILKVIPR---------ERQTF-----------------LFSATM--TKKVRKLQRAS-L-D-NP---V 261 (476)
T ss_pred -------HHHHHHHHhcCc---------cceEE-----------------EEEeec--chhhHHHHhhc-c-C-CC---e
Confidence 477888887763 55555 677764 23344333331 1 1 10 0
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (869)
.+. +.-+||.+ .+ +.+.
T Consensus 262 -----~v~-------------~s~ky~tv---------------~~--------------------------lkQ~---- 278 (476)
T KOG0330|consen 262 -----KVA-------------VSSKYQTV---------------DH--------------------------LKQT---- 278 (476)
T ss_pred -----EEe-------------ccchhcch---------------HH--------------------------hhhh----
Confidence 000 00111111 11 1111
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhh
Q 002898 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (869)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~ 392 (869)
.+|.....|...++..+++ ..|.|++|||++...++.++-+|...|+.|--||+.+.+..|
T Consensus 279 -----------------ylfv~~k~K~~yLV~ll~e--~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 279 -----------------YLFVPGKDKDTYLVYLLNE--LAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKR 339 (476)
T ss_pred -----------------eEeccccccchhHHHHHHh--hcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHH
Confidence 2344555566677777765 568999999999999999999999999999999998877777
Q ss_pred HHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 393 Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
....-. +|| .-.|.|||+.|.||.||.
T Consensus 340 lg~l~~Fk~~-~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 340 LGALNKFKAG-ARSILVCTDVASRGLDIP 367 (476)
T ss_pred HHHHHHHhcc-CCcEEEecchhcccCCCC
Confidence 766655 777 568999999999999995
No 26
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=1.4e-26 Score=263.02 Aligned_cols=278 Identities=17% Similarity=0.195 Sum_probs=189.6
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----------G~~V~VvT~ndyLA~RDae~~~~ly~~ 69 (869)
.|+++|..+++.+++|+ |+++.||+|||++|++|++-.-+. +..+.|++|+.+||.|-++++..+...
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~ 109 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQA 109 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhcc
Confidence 69999999999999998 999999999999999999733321 346999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCcee
Q 002898 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (869)
Q Consensus 70 LGLsv~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (869)
+|++++++.++.+.... .....+||++||++.+ .++++.. ...+. .+.++||||||.|+ |.+
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~---~v~~lViDEad~l~-~~~----- 173 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRL-IDYAKQN------HINLG---AIQVVVLDEADRMF-DLG----- 173 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccccc---cccEEEEecHHHHh-hcc-----
Confidence 99999999988764433 3345689999999987 5555432 12234 89999999999986 432
Q ss_pred ecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccC
Q 002898 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 148 iSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d 227 (869)
+...+..+...++.. ..++.. +|+++.+ ..+.... ...+ .+
T Consensus 174 ----------f~~~i~~i~~~~~~~-------~~~~~~-----------------l~SAT~~--~~~~~~~--~~~~-~~ 214 (423)
T PRK04837 174 ----------FIKDIRWLFRRMPPA-------NQRLNM-----------------LFSATLS--YRVRELA--FEHM-NN 214 (423)
T ss_pred ----------cHHHHHHHHHhCCCc-------cceeEE-----------------EEeccCC--HHHHHHH--HHHC-CC
Confidence 233444455444321 112222 3454422 1122111 1111 11
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 307 (869)
..++. +.
T Consensus 215 p~~i~-------v~------------------------------------------------------------------ 221 (423)
T PRK04837 215 PEYVE-------VE------------------------------------------------------------------ 221 (423)
T ss_pred CEEEE-------Ec------------------------------------------------------------------
Confidence 11111 00
Q ss_pred HhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCC
Q 002898 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (869)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~ 387 (869)
|......+. ....++.+..+|...+...+.. .....+||||++...++.++..|...|+++..+|+++
T Consensus 222 ---------~~~~~~~~i-~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~ 289 (423)
T PRK04837 222 ---------PEQKTGHRI-KEELFYPSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDV 289 (423)
T ss_pred ---------CCCcCCCce-eEEEEeCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 000000000 0112345666777776665543 3467899999999999999999999999999999987
Q ss_pred cchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+.+|+..+-. +.| .-.|.||||+|+||+||.
T Consensus 290 ~~~~R~~~l~~F~~g-~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 290 AQKKRLRILEEFTRG-DLDILVATDVAARGLHIP 322 (423)
T ss_pred ChhHHHHHHHHHHcC-CCcEEEEechhhcCCCcc
Confidence 66666654443 455 558999999999999994
No 27
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=2.4e-26 Score=263.82 Aligned_cols=275 Identities=19% Similarity=0.230 Sum_probs=184.1
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cC---------CcEEEEecCHHHHHHHHHHHHHHhhh
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TG---------EGVHVVTVNDYLAQRDAEWMERVHRF 69 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G---------~~V~VvT~ndyLA~RDae~~~~ly~~ 69 (869)
.|+++|..+++.+++|+ |+.+.||+|||++|++|++ +.| .+ ..|.|++|+.+||.+..+.+..+...
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil-~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~ 101 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL-QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKY 101 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 69999999999999988 9999999999999999997 444 21 25899999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCcee
Q 002898 70 LGLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (869)
Q Consensus 70 LGLsv~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (869)
+++.+..++++.+.... +..-.+||+++|++.| .+++..+ ...+. .++++||||||.|+ |.+
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL-~~~~~~~------~~~l~---~v~~lViDEah~ll-~~~----- 165 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL-LDLEHQN------AVKLD---QVEILVLDEADRML-DMG----- 165 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHH-HHHHHcC------Ccccc---cceEEEeecHHHHh-ccc-----
Confidence 99999999998775433 3333579999999986 3443321 12234 79999999999986 432
Q ss_pred ecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccC
Q 002898 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 148 iSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d 227 (869)
++..+..+...+.. .+++. +|+++. ...+... +..++. +
T Consensus 166 ----------~~~~i~~il~~l~~---------~~q~l-----------------~~SAT~--~~~~~~l--~~~~~~-~ 204 (456)
T PRK10590 166 ----------FIHDIRRVLAKLPA---------KRQNL-----------------LFSATF--SDDIKAL--AEKLLH-N 204 (456)
T ss_pred ----------cHHHHHHHHHhCCc---------cCeEE-----------------EEeCCC--cHHHHHH--HHHHcC-C
Confidence 23344444444432 22332 344442 1122211 122221 1
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 307 (869)
..++. +. ..+.....|
T Consensus 205 ~~~i~-------~~-----------------------------~~~~~~~~i---------------------------- 220 (456)
T PRK10590 205 PLEIE-------VA-----------------------------RRNTASEQV---------------------------- 220 (456)
T ss_pred CeEEE-------Ee-----------------------------cccccccce----------------------------
Confidence 11110 00 000000000
Q ss_pred HhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCC
Q 002898 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (869)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~ 387 (869)
.....+.+...|... +..+... ....++||||+|...++.++..|...|+++..+|+++
T Consensus 221 -------------------~~~~~~~~~~~k~~~-l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~ 279 (456)
T PRK10590 221 -------------------TQHVHFVDKKRKREL-LSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNK 279 (456)
T ss_pred -------------------eEEEEEcCHHHHHHH-HHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 011223444444443 3333321 3457899999999999999999999999999999987
Q ss_pred cchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+.+++..+-+ +.| ...|.|||++++||+||.
T Consensus 280 ~~~~R~~~l~~F~~g-~~~iLVaTdv~~rGiDip 312 (456)
T PRK10590 280 SQGARTRALADFKSG-DIRVLVATDIAARGLDIE 312 (456)
T ss_pred CHHHHHHHHHHHHcC-CCcEEEEccHHhcCCCcc
Confidence 77677655544 455 568999999999999994
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=4.3e-26 Score=265.80 Aligned_cols=276 Identities=17% Similarity=0.213 Sum_probs=185.5
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----------cCCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----------TGEGVHVVTVNDYLAQRDAEWMERVHRF 69 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----------~G~~V~VvT~ndyLA~RDae~~~~ly~~ 69 (869)
.|+|+|..+.+.+++|+ |+.+.||+|||++|++|++.+.+ .|..+.|++|+++||.|..+++..+...
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~ 222 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKG 222 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCC
Confidence 59999999999999998 99999999999999999975443 2456999999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCcee
Q 002898 70 LGLSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (869)
Q Consensus 70 LGLsv~~i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (869)
+++++.++.++.+... ++..-++||+++||+.| .|+|..+ ...++ .+.++||||||.|+ |.+
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL-~~~l~~~------~~~l~---~v~~lViDEad~ml-~~g----- 286 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRL-IDLLSKH------DIELD---NVSVLVLDEVDCML-ERG----- 286 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Cccch---heeEEEeecHHHHh-hcc-----
Confidence 9999988888765332 23344689999999987 4555433 12344 78999999999986 432
Q ss_pred ecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccC
Q 002898 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 148 iSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d 227 (869)
+...+..+...+. ..++. +|+++. ...+... +..++.
T Consensus 287 ----------f~~~i~~i~~~l~----------~~q~l-----------------~~SATl--~~~v~~l--~~~~~~-- 323 (518)
T PLN00206 287 ----------FRDQVMQIFQALS----------QPQVL-----------------LFSATV--SPEVEKF--ASSLAK-- 323 (518)
T ss_pred ----------hHHHHHHHHHhCC----------CCcEE-----------------EEEeeC--CHHHHHH--HHHhCC--
Confidence 2233444444332 12222 344432 1222211 122211
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 307 (869)
++++ |+
T Consensus 324 -~~~~-------i~------------------------------------------------------------------ 329 (518)
T PLN00206 324 -DIIL-------IS------------------------------------------------------------------ 329 (518)
T ss_pred -CCEE-------EE------------------------------------------------------------------
Confidence 1110 10
Q ss_pred HhCCCeEEeC-CCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHH-CCCCeEEeec
Q 002898 308 MFQMPVIEVP-TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ-QGIPHNVLNA 385 (869)
Q Consensus 308 iY~l~vv~IP-t~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~-~gi~~~vLna 385 (869)
+. .+.+.. ......++.....|...+.+.+........|+||||+|...++.++..|.. .|+++..+|+
T Consensus 330 --------~~~~~~~~~-~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg 400 (518)
T PLN00206 330 --------IGNPNRPNK-AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHG 400 (518)
T ss_pred --------eCCCCCCCc-ceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeC
Confidence 00 001100 001112344445566666655544333345899999999999999999975 6999999999
Q ss_pred CCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 386 ~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
++.+.+|+..+-. ++| .-.|.|||+.|+||+||.
T Consensus 401 ~~~~~eR~~il~~Fr~G-~~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 401 EKSMKERREVMKSFLVG-EVPVIVATGVLGRGVDLL 435 (518)
T ss_pred CCCHHHHHHHHHHHHCC-CCCEEEEecHhhccCCcc
Confidence 8766666654444 566 457999999999999994
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=4.8e-26 Score=268.12 Aligned_cols=278 Identities=19% Similarity=0.233 Sum_probs=193.3
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----------CCcEEEEecCHHHHHHHHHHHHHHhh
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVHR 68 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----------G~~V~VvT~ndyLA~RDae~~~~ly~ 68 (869)
.|+++|..+++.+++|+ |+++.||+|||++|++|++ +.|. +..|.|++|+.+||.+.++.+..|..
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil-~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM-NRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHH-HHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhc
Confidence 69999999999999998 9999999999999999997 4441 34799999999999999999999999
Q ss_pred hcCCeEEEEcCCCCHHHHHhcc--CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCce
Q 002898 69 FLGLSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (869)
Q Consensus 69 ~LGLsv~~i~~~~~~~~rk~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPL 146 (869)
.+|++++.++++.+...+.... .+||+++|++.| +++|+.+-. ..+. .+.++||||||.|+ |.+
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL-~~~l~~~~~-----~~l~---~v~~lViDEAh~ll-d~g---- 175 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRL-IDYVKQHKV-----VSLH---ACEICVLDEADRMF-DLG---- 175 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHH-HHHHHhccc-----cchh---heeeeEecCHHHHh-hcc----
Confidence 9999999999998765544333 479999999987 566643211 1233 78899999999986 432
Q ss_pred eecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 002898 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (869)
Q Consensus 147 iiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~ 226 (869)
++..+..++..+... ..+++. +|+++. ...+.... ...+..
T Consensus 176 -----------f~~~i~~il~~lp~~-------~~~q~l-----------------l~SATl--~~~v~~l~--~~~l~~ 216 (572)
T PRK04537 176 -----------FIKDIRFLLRRMPER-------GTRQTL-----------------LFSATL--SHRVLELA--YEHMNE 216 (572)
T ss_pred -----------hHHHHHHHHHhcccc-------cCceEE-----------------EEeCCc--cHHHHHHH--HHHhcC
Confidence 344555666655421 133444 566653 22333221 222221
Q ss_pred CcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHH
Q 002898 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (869)
Q Consensus 227 d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 306 (869)
... + +++. ++.+...+..
T Consensus 217 p~~-i-------~v~~-----------------------------~~~~~~~i~q------------------------- 234 (572)
T PRK04537 217 PEK-L-------VVET-----------------------------ETITAARVRQ------------------------- 234 (572)
T ss_pred CcE-E-------Eecc-----------------------------ccccccceeE-------------------------
Confidence 111 1 1110 0000000100
Q ss_pred HHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
..++....+|...++..+.. ..+.++||||+|+..++.+++.|...|+++.++|++
T Consensus 235 ----------------------~~~~~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~ 290 (572)
T PRK04537 235 ----------------------RIYFPADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGD 290 (572)
T ss_pred ----------------------EEEecCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11223445566665555433 457899999999999999999999999999999998
Q ss_pred CcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+.+.+|+..+-. +.| ...|+|||++++||+||.
T Consensus 291 l~~~eR~~il~~Fr~G-~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 291 VPQKKRESLLNRFQKG-QLEILVATDVAARGLHID 324 (572)
T ss_pred CCHHHHHHHHHHHHcC-CCeEEEEehhhhcCCCcc
Confidence 777777654444 445 568999999999999994
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=1.6e-25 Score=265.79 Aligned_cols=275 Identities=19% Similarity=0.207 Sum_probs=191.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv 74 (869)
.|+|+|..+++.+++|+ |+++.||+|||++|.+|++ ..+ .+..|.|++|+.+||.|-++.+..+...+ |+.+
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll-~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v 106 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL-HNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHH-HHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 58999999999999998 9999999999999999996 444 23478999999999999999999998876 8999
Q ss_pred EEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 75 GLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 75 ~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
..++++.+.+.+. ..-.++|++||++.| +|+|+.. ...+. .+.++||||||.|| +.+
T Consensus 107 ~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl-~d~l~r~------~l~l~---~l~~lVlDEAd~ml-~~g---------- 165 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRL-LDHLKRG------TLDLS---KLSGLVLDEADEML-RMG---------- 165 (629)
T ss_pred EEEECCcCHHHHHHHhcCCCCEEEECHHHH-HHHHHcC------Ccchh---hceEEEeccHHHHh-hcc----------
Confidence 9999988755433 344679999999997 5555321 12244 78999999999997 332
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
+...+..++..++. .+++. +|+++.+ ..+... ++.++. +...+
T Consensus 166 -----f~~di~~Il~~lp~---------~~q~l-----------------lfSAT~p--~~i~~i--~~~~l~-~~~~i- 208 (629)
T PRK11634 166 -----FIEDVETIMAQIPE---------GHQTA-----------------LFSATMP--EAIRRI--TRRFMK-EPQEV- 208 (629)
T ss_pred -----cHHHHHHHHHhCCC---------CCeEE-----------------EEEccCC--hhHHHH--HHHHcC-CCeEE-
Confidence 33455566666643 33444 5666642 233322 223322 21111
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (869)
.+.. ...+...|+.
T Consensus 209 -----~i~~------------------------------~~~~~~~i~q------------------------------- 222 (629)
T PRK11634 209 -----RIQS------------------------------SVTTRPDISQ------------------------------- 222 (629)
T ss_pred -----EccC------------------------------ccccCCceEE-------------------------------
Confidence 1100 0000011110
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhh
Q 002898 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (869)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~ 392 (869)
..+......|..++...+.. ....++||||+|...++.|+..|.+.|+.+..||+.+.+.++
T Consensus 223 ----------------~~~~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 223 ----------------SYWTVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 (629)
T ss_pred ----------------EEEEechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHH
Confidence 01122334567776665543 334689999999999999999999999999999998777777
Q ss_pred HHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 393 Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+..+-. +.| .-.|.|||++|+||+||.
T Consensus 285 ~~il~~Fr~G-~~~ILVATdv~arGIDip 312 (629)
T PRK11634 285 EQTLERLKDG-RLDILIATDVAARGLDVE 312 (629)
T ss_pred HHHHHHHhCC-CCCEEEEcchHhcCCCcc
Confidence 765555 445 557999999999999994
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.6e-25 Score=256.89 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=191.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC----CcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G----~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv 74 (869)
.|+|+|..+.+.+++|+ |+++.||+|||++|.+|+. ..+.. ..+.|+||+++||.|-++++..+...+ ++++
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil-~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL-QKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH-HHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 48999999999999998 9999999999999999996 56632 368999999999999999999998766 8999
Q ss_pred EEEcCCCCHHHHHh--ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 75 GLIQRGMIPEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 75 ~~i~~~~~~~~rk~--aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
..++++.+...+.. .-.+||++||++.| .|+++.. ..... .+.++|+||||.|+ |.+
T Consensus 105 ~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl-~~~l~~~------~~~l~---~l~~lViDEad~~l-~~g---------- 163 (460)
T PRK11776 105 LTLCGGVPMGPQIDSLEHGAHIIVGTPGRI-LDHLRKG------TLDLD---ALNTLVLDEADRML-DMG---------- 163 (460)
T ss_pred EEEECCCChHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CccHH---HCCEEEEECHHHHh-CcC----------
Confidence 99999987654433 34579999999987 4555331 12234 78999999999987 432
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
++..+..+...+++ .+++. +|+++. ...+... +..++. +..
T Consensus 164 -----~~~~l~~i~~~~~~---------~~q~l-----------------l~SAT~--~~~~~~l--~~~~~~-~~~--- 204 (460)
T PRK11776 164 -----FQDAIDAIIRQAPA---------RRQTL-----------------LFSATY--PEGIAAI--SQRFQR-DPV--- 204 (460)
T ss_pred -----cHHHHHHHHHhCCc---------ccEEE-----------------EEEecC--cHHHHHH--HHHhcC-CCE---
Confidence 34456666666643 33444 455543 2223221 222222 110
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (869)
.+.++.. . ....|..
T Consensus 205 ----~i~~~~~-----------------------------~-~~~~i~~------------------------------- 219 (460)
T PRK11776 205 ----EVKVEST-----------------------------H-DLPAIEQ------------------------------- 219 (460)
T ss_pred ----EEEECcC-----------------------------C-CCCCeeE-------------------------------
Confidence 0111100 0 0000100
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhh
Q 002898 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (869)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~ 392 (869)
..+.....+|+.++...+.. ..+.++||||+|.+.++.+++.|.+.|+++..+|+++.+.+|
T Consensus 220 ----------------~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR 281 (460)
T PRK11776 220 ----------------RFYEVSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDR 281 (460)
T ss_pred ----------------EEEEeCcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 01122334577776665543 346789999999999999999999999999999998777777
Q ss_pred HHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 393 Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+..+.. +.| ...|.|||++|+||+||.
T Consensus 282 ~~~l~~F~~g-~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 282 DQVLVRFANR-SCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHHcC-CCcEEEEecccccccchh
Confidence 765554 455 568999999999999994
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=2.6e-25 Score=253.23 Aligned_cols=273 Identities=21% Similarity=0.232 Sum_probs=182.3
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
.|+++|..+++.+++|+ |+.+.||.|||++|++|++ +.|. +..|.|++|+.+||.+-++++..+...+|
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l-~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~ 101 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL-QHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTH 101 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCC
Confidence 58999999999999987 9999999999999999997 4431 24799999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHhcc--CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeec
Q 002898 72 LSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (869)
Q Consensus 72 Lsv~~i~~~~~~~~rk~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (869)
++++.++++.+...+...+ .+||++||++.| ++++... ....+ .+.++||||||.|+ |.++
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl-~~~~~~~------~~~~~---~v~~lViDEah~~l-~~~~------ 164 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRL-LQYIKEE------NFDCR---AVETLILDEADRML-DMGF------ 164 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC------CcCcc---cCCEEEEECHHHHh-CCCc------
Confidence 9999999998766555444 479999999987 5555432 12234 89999999999986 4321
Q ss_pred CCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcc
Q 002898 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (869)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~d 229 (869)
...+..+...+.. .++++ +|+++.+ ...+.. + +..++.
T Consensus 165 ---------~~~~~~i~~~~~~---------~~q~~-----------------~~SAT~~-~~~~~~-~-~~~~~~---- 202 (434)
T PRK11192 165 ---------AQDIETIAAETRW---------RKQTL-----------------LFSATLE-GDAVQD-F-AERLLN---- 202 (434)
T ss_pred ---------HHHHHHHHHhCcc---------ccEEE-----------------EEEeecC-HHHHHH-H-HHHHcc----
Confidence 2233333322211 12222 2333311 011111 0 111111
Q ss_pred eEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHh
Q 002898 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (869)
Q Consensus 230 YiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY 309 (869)
T Consensus 203 -------------------------------------------------------------------------------- 202 (434)
T PRK11192 203 -------------------------------------------------------------------------------- 202 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCe-EEe-CCCCCcccccCCCeE-EeC-hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeec
Q 002898 310 QMPV-IEV-PTNLPNIRVDLPIQS-FAT-ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (869)
Q Consensus 310 ~l~v-v~I-Pt~~p~~R~d~~d~i-~~t-~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna 385 (869)
-.+ +.+ |+... +......+ ..+ ...|...+...+ +. ....++||||+|.+.++.++..|...|+++..+|+
T Consensus 203 -~~~~i~~~~~~~~--~~~i~~~~~~~~~~~~k~~~l~~l~-~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g 277 (434)
T PRK11192 203 -DPVEVEAEPSRRE--RKKIHQWYYRADDLEHKTALLCHLL-KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEG 277 (434)
T ss_pred -CCEEEEecCCccc--ccCceEEEEEeCCHHHHHHHHHHHH-hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecC
Confidence 110 111 11100 00000111 122 234444443333 21 34678999999999999999999999999999999
Q ss_pred CCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 386 ~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
++.+.+|+..+-. +.| ...|.|||++++||+||.
T Consensus 278 ~~~~~~R~~~l~~f~~G-~~~vLVaTd~~~~GiDip 312 (434)
T PRK11192 278 EMVQAKRNEAIKRLTDG-RVNVLVATDVAARGIDID 312 (434)
T ss_pred CCCHHHHHHHHHHHhCC-CCcEEEEccccccCccCC
Confidence 8777777655554 455 568999999999999983
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=3e-24 Score=247.62 Aligned_cols=278 Identities=19% Similarity=0.230 Sum_probs=181.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWMERVHRF 69 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----------G~~V~VvT~ndyLA~RDae~~~~ly~~ 69 (869)
.||++|..++..+++|+ |+...||+|||++|.+|++-..+. +..+.|++|+..||.+.++.+..+...
T Consensus 109 ~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~ 188 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY 188 (475)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 58999999999999998 999999999999999999744333 246899999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHH--HHh-ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCce
Q 002898 70 LGLSVGLIQRGMIPEE--RRS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (869)
Q Consensus 70 LGLsv~~i~~~~~~~~--rk~-aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPL 146 (869)
+|+.+..+.++.+... +.. .-.+||+++|++.| .+++. .. ...++ .+.++||||+|.++ +.+
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~L-l~~~~----~~--~~~l~---~l~~lViDEah~l~-~~~---- 253 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL-LDFNQ----RG--EVHLD---MVEVMVLDEADRML-DMG---- 253 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHH-HHHHH----cC--Ccccc---cCceEEechHHHHH-hcc----
Confidence 9999999998866332 222 23579999999886 33332 11 23345 89999999999976 432
Q ss_pred eecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 002898 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (869)
Q Consensus 147 iiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~ 226 (869)
+.+.+..+...+... ..+++. +++++. ...+.+. +..++.
T Consensus 254 -----------~~~~l~~i~~~~~~~-------~~~q~i-----------------~~SAT~--~~~~~~~--~~~~~~- 293 (475)
T PRK01297 254 -----------FIPQVRQIIRQTPRK-------EERQTL-----------------LFSATF--TDDVMNL--AKQWTT- 293 (475)
T ss_pred -----------cHHHHHHHHHhCCCC-------CCceEE-----------------EEEeec--CHHHHHH--HHHhcc-
Confidence 233455555544321 122333 344432 1112211 122211
Q ss_pred CcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHH
Q 002898 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (869)
Q Consensus 227 d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 306 (869)
+. + ++-+. +++.....+
T Consensus 294 ~~--~-----~v~~~-----------------------------~~~~~~~~~--------------------------- 310 (475)
T PRK01297 294 DP--A-----IVEIE-----------------------------PENVASDTV--------------------------- 310 (475)
T ss_pred CC--E-----EEEec-----------------------------cCcCCCCcc---------------------------
Confidence 10 0 00000 000000000
Q ss_pred HHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 307 KMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 307 ~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
+ .........+|+..+...+.. ..+..+||||+|.+.++.++..|...|+++..+|+.
T Consensus 311 -----------------~---~~~~~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~ 368 (475)
T PRK01297 311 -----------------E---QHVYAVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGD 368 (475)
T ss_pred -----------------c---EEEEEecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 0 001122334566555554433 345689999999999999999999999999999997
Q ss_pred CcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 387 PKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 387 ~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
..+.+|+..+-. +.| .-.|.||||+++||+||.
T Consensus 369 ~~~~~R~~~~~~Fr~G-~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 369 VPQHKRIKTLEGFREG-KIRVLVATDVAGRGIHID 402 (475)
T ss_pred CCHHHHHHHHHHHhCC-CCcEEEEccccccCCccc
Confidence 655555543333 456 557999999999999993
No 34
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=232.01 Aligned_cols=281 Identities=21% Similarity=0.204 Sum_probs=194.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+|||.-|++.++.|+ |...+||+|||.+|++|.+ +-|+ |.-..|+||+++||-|.+|+|..+-+.+|++|+
T Consensus 29 ~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil-~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~ 107 (442)
T KOG0340|consen 29 KPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPIL-NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVS 107 (442)
T ss_pred CCCchHhhhhHHHhcccccccccccCCCcchhhhHHHH-HhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEE
Confidence 59999999999999999 9999999999999999996 8886 456789999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 76 ~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+|+|+++ .+.....-..||+.+|++++ .|.|+.|.... ..+.. .+.|+++||||.|| +..
T Consensus 108 vivGG~d~i~qa~~L~~rPHvVvatPGRl-ad~l~sn~~~~--~~~~~---rlkflVlDEADrvL-~~~----------- 169 (442)
T KOG0340|consen 108 VIVGGTDMIMQAAILSDRPHVVVATPGRL-ADHLSSNLGVC--SWIFQ---RLKFLVLDEADRVL-AGC----------- 169 (442)
T ss_pred EEEccHHHhhhhhhcccCCCeEecCcccc-ccccccCCccc--hhhhh---ceeeEEecchhhhh-ccc-----------
Confidence 9999987 44555666789999999996 34444432211 13344 79999999999997 211
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCc--ceE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV--QYI 231 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~--dYi 231 (869)
+-.....+.+.+ |+.|+.+ ||+++. ...++.++.+.-.. -|.
T Consensus 170 ----f~d~L~~i~e~l---------P~~RQtL-----------------lfSATi------td~i~ql~~~~i~k~~a~~ 213 (442)
T KOG0340|consen 170 ----FPDILEGIEECL---------PKPRQTL-----------------LFSATI------TDTIKQLFGCPITKSIAFE 213 (442)
T ss_pred ----hhhHHhhhhccC---------CCccceE-----------------EEEeeh------hhHHHHhhcCCcccccceE
Confidence 111222223333 3345555 566541 22222222111000 011
Q ss_pred EECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCC
Q 002898 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (869)
Q Consensus 232 V~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l 311 (869)
+ |+..|+++ ++ -|.
T Consensus 214 ~-----------------------------e~~~~vst-ve-------------------------------tL~----- 227 (442)
T KOG0340|consen 214 L-----------------------------EVIDGVST-VE-------------------------------TLY----- 227 (442)
T ss_pred E-----------------------------eccCCCCc-hh-------------------------------hhh-----
Confidence 1 01111110 00 001
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHh-cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcch
Q 002898 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (869)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~-~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~ 390 (869)
...|+...+.|..-++.-+....+ ....++||+++...++.|+..|+..++...-||+-+.|.
T Consensus 228 ----------------q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~ 291 (442)
T KOG0340|consen 228 ----------------QGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQK 291 (442)
T ss_pred ----------------hheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHH
Confidence 112455556666556655544333 367899999999999999999999999999999976666
Q ss_pred hhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 391 ~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+|-+.+-+ +++ .-+|+|||+.|.||.||.
T Consensus 292 eR~~aLsrFrs~-~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 292 ERLAALSRFRSN-AARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHHHHHhhc-CccEEEEechhhcCCCCC
Confidence 66666666 444 668999999999999995
No 35
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=239.46 Aligned_cols=277 Identities=20% Similarity=0.222 Sum_probs=204.3
Q ss_pred CchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-------CC--cEEEEecCHHHHHHHHHHHHHHhhh-c
Q 002898 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-------GE--GVHVVTVNDYLAQRDAEWMERVHRF-L 70 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-------G~--~V~VvT~ndyLA~RDae~~~~ly~~-L 70 (869)
-+|||..+++.|+.++ ++|..||+||||+|++|+. ..+. +. +..||||+++||.|..+-.++|... .
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~l-e~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPML-EIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHH-HHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 3799999999999988 9999999999999999996 5562 22 5689999999999999999999886 7
Q ss_pred CCeEEEEcCCCCHHHHHh---ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCcee
Q 002898 71 GLSVGLIQRGMIPEERRS---NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (869)
Q Consensus 71 GLsv~~i~~~~~~~~rk~---aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (869)
.+++-+++||.+.++--. .-.+.|++||||++ +|.+... .+..-.| .+.++|+||||..| |.++
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL-~di~~~~----~~~l~~r---sLe~LVLDEADrLl-dmgF---- 174 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRL-LDILQRE----AEKLSFR---SLEILVLDEADRLL-DMGF---- 174 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhH-HHHHhch----hhhcccc---ccceEEecchHhHh-cccH----
Confidence 999999999988765443 34578999999997 5555432 2233355 99999999999965 8764
Q ss_pred ecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccC
Q 002898 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 148 iSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d 227 (869)
-..++.++..|++ +|.+ .|||++. ...+.+..+| .+. |
T Consensus 175 -----------e~~~n~ILs~LPK---------QRRT-----------------GLFSATq--~~~v~dL~ra--GLR-N 212 (567)
T KOG0345|consen 175 -----------EASVNTILSFLPK---------QRRT-----------------GLFSATQ--TQEVEDLARA--GLR-N 212 (567)
T ss_pred -----------HHHHHHHHHhccc---------cccc-----------------ccccchh--hHHHHHHHHh--hcc-C
Confidence 3478889999964 4443 3899864 3344443222 222 1
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcc--eeeeeeehhHhhhcCcccccCCCcccHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSV--VVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~--t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef 305 (869)
++. |.+..++. |.++...
T Consensus 213 --------------------------------pv~----V~V~~k~~~~tPS~L~~------------------------ 232 (567)
T KOG0345|consen 213 --------------------------------PVR----VSVKEKSKSATPSSLAL------------------------ 232 (567)
T ss_pred --------------------------------cee----eeecccccccCchhhcc------------------------
Confidence 111 11212221 1111111
Q ss_pred HHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEe
Q 002898 306 LKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVL 383 (869)
Q Consensus 306 ~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~--gi~~~vL 383 (869)
..+-....+|...+++.+.. ..-..++||++|...++..+..|... +++.--+
T Consensus 233 -----------------------~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~i 287 (567)
T KOG0345|consen 233 -----------------------EYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSI 287 (567)
T ss_pred -----------------------eeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEe
Confidence 12235668899998888765 45678999999999999999988664 5677789
Q ss_pred ecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 384 NARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 384 na~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
|++++|.+|-..+.+.--.+..|.++|+.|.||+||.
T Consensus 288 HGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip 324 (567)
T KOG0345|consen 288 HGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIP 324 (567)
T ss_pred cchhcchhHHHHHHHHHhccCceEEeehhhhccCCCC
Confidence 9998888787666665556789999999999999994
No 36
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.93 E-value=1.3e-23 Score=233.99 Aligned_cols=280 Identities=21% Similarity=0.257 Sum_probs=204.6
Q ss_pred chhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-------CCcEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 002898 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-------GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-------G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLs 73 (869)
++||-..++-++.|+ ++..+||+|||++|++||+-.-+. |-+|.||||+++||-|.+.+...+..+. +++
T Consensus 106 T~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~ 185 (543)
T KOG0342|consen 106 TPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESIT 185 (543)
T ss_pred hHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcc
Confidence 578999999999999 999999999999999999833332 4589999999999999999999999999 999
Q ss_pred EEEEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCC
Q 002898 74 VGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (869)
Q Consensus 74 v~~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (869)
|+.+.||.. .++.+..-.|.|+++|||+| .|++...+ ..+.| .+.++|+||||.+| |.++
T Consensus 186 v~~viGG~~~~~e~~kl~k~~niliATPGRL-----lDHlqNt~-~f~~r---~~k~lvlDEADrlL-d~GF-------- 247 (543)
T KOG0342|consen 186 VGIVIGGNNFSVEADKLVKGCNILIATPGRL-----LDHLQNTS-GFLFR---NLKCLVLDEADRLL-DIGF-------- 247 (543)
T ss_pred eEEEeCCccchHHHHHhhccccEEEeCCchH-----HhHhhcCC-cchhh---ccceeEeecchhhh-hccc--------
Confidence 999999865 55566666999999999995 56665443 24555 88999999999987 7754
Q ss_pred CCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceE
Q 002898 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (869)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYi 231 (869)
-..+.+++..++ +.+|.+ |||++. ...|.+. |+-.+++|.-||
T Consensus 248 -------~~di~~Ii~~lp---------k~rqt~-----------------LFSAT~--~~kV~~l--~~~~L~~d~~~v 290 (543)
T KOG0342|consen 248 -------EEDVEQIIKILP---------KQRQTL-----------------LFSATQ--PSKVKDL--ARGALKRDPVFV 290 (543)
T ss_pred -------HHHHHHHHHhcc---------ccceee-----------------EeeCCC--cHHHHHH--HHHhhcCCceEe
Confidence 246778888875 367776 899875 2445543 334445554443
Q ss_pred EECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCC
Q 002898 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (869)
Q Consensus 232 V~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l 311 (869)
=. +|...+...+ |+.|
T Consensus 291 ~~------~d~~~~~The------~l~Q---------------------------------------------------- 306 (543)
T KOG0342|consen 291 NV------DDGGERETHE------RLEQ---------------------------------------------------- 306 (543)
T ss_pred ec------CCCCCcchhh------cccc----------------------------------------------------
Confidence 21 2221111111 1111
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchh
Q 002898 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (869)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~ 391 (869)
..+......++..+...+++.. +.-.|+|||+|+......+.+|....+|+--+|++++|..
T Consensus 307 -----------------gyvv~~~~~~f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 307 -----------------GYVVAPSDSRFSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNK 368 (543)
T ss_pred -----------------eEEeccccchHHHHHHHHHHhc-CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccc
Confidence 1223344445667777776643 3378999999999999999999999999999999877766
Q ss_pred hHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 392 REAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 392 ~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
|-...-...-...-|.+|||.|+||.||.
T Consensus 369 RT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 369 RTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred cchHHHHHhhcccceEEecchhhccCCCC
Confidence 65433332222455999999999999994
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=4.7e-23 Score=237.64 Aligned_cols=269 Identities=16% Similarity=0.179 Sum_probs=177.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|+|..++.++++|+ ++.|.||.|||++|.+|++. .+..+.||+|+..|+.+..+.+. .+|+++..+.+
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~----~~gi~~~~l~~ 83 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK----ASGIPATFLNS 83 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH----HcCCcEEEEeC
Confidence 47899999999999988 99999999999999999973 46678999999999987666654 57999999988
Q ss_pred CCCHHHHHhcc------CCCeEEECCCchhhhH-HHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 80 GMIPEERRSNY------RCDITYTNNSELGFDY-LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 80 ~~~~~~rk~aY------~~DI~YgT~~e~~fDy-LrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
+.+..+++..+ ..+|+|+||..+.-.. +...+. ... .+.++||||||.++ +-+..
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~------~~~---~i~~iViDEaH~i~-~~g~~-------- 145 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE------ERK---GITLIAVDEAHCIS-QWGHD-------- 145 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH------hcC---CcCEEEEeCCcccC-ccccc--------
Confidence 88766554332 3689999998763221 222211 123 89999999999975 21100
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
-...|..+..+...++
T Consensus 146 --fr~~~~~l~~l~~~~~-------------------------------------------------------------- 161 (470)
T TIGR00614 146 --FRPDYKALGSLKQKFP-------------------------------------------------------------- 161 (470)
T ss_pred --cHHHHHHHHHHHHHcC--------------------------------------------------------------
Confidence 0000000000000000
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH-HHHHHHHhCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM 311 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~iY~l 311 (869)
-..+.++|+|+... ..++.+..++
T Consensus 162 -------------------------------------------------------~~~~l~lTAT~~~~~~~di~~~l~l 186 (470)
T TIGR00614 162 -------------------------------------------------------NVPIMALTATASPSVREDILRQLNL 186 (470)
T ss_pred -------------------------------------------------------CCceEEEecCCCHHHHHHHHHHcCC
Confidence 01245777777653 3344454444
Q ss_pred C---eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCc
Q 002898 312 P---VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (869)
Q Consensus 312 ~---vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~ 388 (869)
. ++....++|..+ ..+.......+..+...+.. ...|..+||||.|++.++.++..|.+.|+++..+||++.
T Consensus 187 ~~~~~~~~s~~r~nl~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~ 261 (470)
T TIGR00614 187 KNPQIFCTSFDRPNLY----YEVRRKTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLE 261 (470)
T ss_pred CCCcEEeCCCCCCCcE----EEEEeCCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCC
Confidence 2 222333344322 11111212344455555543 245778899999999999999999999999999999876
Q ss_pred chhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 389 ~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
..+|+..+-. ..| .-.|.|||+++|||+|+.
T Consensus 262 ~~eR~~i~~~F~~g-~~~vLVaT~~~~~GID~p 293 (470)
T TIGR00614 262 ISARDDVHHKFQRD-EIQVVVATVAFGMGINKP 293 (470)
T ss_pred HHHHHHHHHHHHcC-CCcEEEEechhhccCCcc
Confidence 6666543333 455 558999999999999994
No 38
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=235.89 Aligned_cols=279 Identities=20% Similarity=0.268 Sum_probs=208.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL--------~G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
.|.+||--+++.-++|+ |+-.+||+||||+|++|++ .+| .|-||.||+|+++||-|.++-+..+..+-+
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvl-E~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVL-EALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred cHHHHHHhhcchhccCcccccccccCCCceeeehHHHH-HHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 46789999999999999 9999999999999999996 676 367999999999999999999999999999
Q ss_pred CeEEEEcCCCCHH-HHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecC
Q 002898 72 LSVGLIQRGMIPE-ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (869)
Q Consensus 72 Lsv~~i~~~~~~~-~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg 150 (869)
+|+|+|.||.+.. ++-..-++.|.+||||++ ..+|...+. .-.. ++.++|+||||+|| |+|+.
T Consensus 170 fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRL-----LQHmde~~~-f~t~---~lQmLvLDEADR~L-DMGFk------ 233 (758)
T KOG0343|consen 170 FSAGLIIGGKDVKFELERISQMNILVCTPGRL-----LQHMDENPN-FSTS---NLQMLVLDEADRML-DMGFK------ 233 (758)
T ss_pred cccceeecCchhHHHHHhhhcCCeEEechHHH-----HHHhhhcCC-CCCC---cceEEEeccHHHHH-HHhHH------
Confidence 9999999998844 555677899999999995 566655432 2223 89999999999997 87643
Q ss_pred CCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcce
Q 002898 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (869)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dY 230 (869)
..++.++..|++ .||++ |||++.. .-|... | .|--+|..|
T Consensus 234 ---------~tL~~Ii~~lP~---------~RQTL-----------------LFSATqt--~svkdL--a-RLsL~dP~~ 273 (758)
T KOG0343|consen 234 ---------KTLNAIIENLPK---------KRQTL-----------------LFSATQT--KSVKDL--A-RLSLKDPVY 273 (758)
T ss_pred ---------HHHHHHHHhCCh---------hheee-----------------eeecccc--hhHHHH--H-HhhcCCCcE
Confidence 478889999865 67777 8988631 122222 1 222356666
Q ss_pred EEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhC
Q 002898 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 310 (869)
Q Consensus 231 iV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~ 310 (869)
|-. | -+.++++ ...|++.|
T Consensus 274 vsv------------------------h-----------------------------------e~a~~at-P~~L~Q~y- 292 (758)
T KOG0343|consen 274 VSV------------------------H-----------------------------------ENAVAAT-PSNLQQSY- 292 (758)
T ss_pred EEE------------------------e-----------------------------------ccccccC-hhhhhheE-
Confidence 541 1 0000110 01122222
Q ss_pred CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEeecCCc
Q 002898 311 MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLNARPK 388 (869)
Q Consensus 311 l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~--gi~~~vLna~~~ 388 (869)
+.+...+|...+-.-|.... ....|||..|..++..+...+.+. |+|.--||++++
T Consensus 293 --------------------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~ 350 (758)
T KOG0343|consen 293 --------------------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMS 350 (758)
T ss_pred --------------------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchh
Confidence 23455788888888887633 468999999999999999999764 899999999887
Q ss_pred chhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 389 YAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 389 ~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
|..|-...-..--....|..||++|.||.|+.
T Consensus 351 Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 351 QKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 76664322223333567999999999999995
No 39
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=7.8e-24 Score=238.50 Aligned_cols=283 Identities=21% Similarity=0.239 Sum_probs=209.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-------------CcEEEEecCHHHHHHHHHHHHHH
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-------------EGVHVVTVNDYLAQRDAEWMERV 66 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G-------------~~V~VvT~ndyLA~RDae~~~~l 66 (869)
+|.|||-.+++++.+|+ +|+.+||+|||.+|++|+.-.++.. -++.|++||++||.|.+++.++|
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 69999999999999998 9999999999999999998666643 36899999999999999999999
Q ss_pred hhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh-cCC
Q 002898 67 HRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-EGR 143 (869)
Q Consensus 67 y~~LGLsv~~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD-ea~ 143 (869)
--..++.+..++++.+ .+.+...-+|||.++|++++ -|.+... ..-+. .+.|+|+||||.|| | .++
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL-~d~~e~g------~i~l~---~~k~~vLDEADrMl-D~mgF 244 (482)
T KOG0335|consen 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRL-KDLIERG------KISLD---NCKFLVLDEADRML-DEMGF 244 (482)
T ss_pred cccccceeeeeeCCcchhhhhhhhccCccEEEecCchh-hhhhhcc------eeehh---hCcEEEecchHHhh-hhccc
Confidence 9999999999999854 44555667899999999996 2444322 22334 78899999999997 7 776
Q ss_pred CceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Q 002898 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (869)
Q Consensus 144 tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l 223 (869)
-| .+.+++.++.... ...++.. ||+++. ...++. +.+..+
T Consensus 245 ~p---------------~Ir~iv~~~~~~~-----~~~~qt~-----------------mFSAtf--p~~iq~-l~~~fl 284 (482)
T KOG0335|consen 245 EP---------------QIRKIVEQLGMPP-----KNNRQTL-----------------LFSATF--PKEIQR-LAADFL 284 (482)
T ss_pred cc---------------cHHHHhcccCCCC-----ccceeEE-----------------EEeccC--Chhhhh-hHHHHh
Confidence 66 7778877664311 1234444 788874 344554 333333
Q ss_pred hccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHH
Q 002898 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (869)
Q Consensus 224 ~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~ 303 (869)
+ .+ |+..-
T Consensus 285 ~-~~--yi~la--------------------------------------------------------------------- 292 (482)
T KOG0335|consen 285 K-DN--YIFLA--------------------------------------------------------------------- 292 (482)
T ss_pred h-cc--ceEEE---------------------------------------------------------------------
Confidence 2 11 44311
Q ss_pred HHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHH---hcC----CcEEEEecchhhHHHHHHHHHHC
Q 002898 304 EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMF---RLG----RPVLVGSTSVENSEYLSDLLKQQ 376 (869)
Q Consensus 304 Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~---~~g----rPVLV~t~Si~~SE~ls~~L~~~ 376 (869)
|..|-+..++.. .-.+|..+.+|...+++...... .+| .-+|||+++++.+..++..|...
T Consensus 293 ---------V~rvg~~~~ni~---q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 293 ---------VGRVGSTSENIT---QKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred ---------Eeeeccccccce---eEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 111111111111 13457888888888888776543 222 24999999999999999999999
Q ss_pred CCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 377 GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 377 gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
|+++.-+|+...+.++|..+-. +.| +-.|.||||.|.||.||+
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNG-KAPVLVATNVAARGLDIP 404 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcC-CcceEEEehhhhcCCCCC
Confidence 9999999997667777777766 445 557999999999999996
No 40
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.1e-24 Score=233.52 Aligned_cols=277 Identities=22% Similarity=0.259 Sum_probs=198.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------G~~V~VvT~ndyLA~RDae~~~~ly~~L 70 (869)
+|.|+|-.+-+++++|. |.-.+||.||||+++||.+++-+. |-+|.|+||+++||.+. |-+...|.+-
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqi-e~e~~kysyn 320 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQI-EGEVKKYSYN 320 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHH-HhHHhHhhhc
Confidence 69999999999999999 888999999999999999876442 56899999999999986 4556689999
Q ss_pred CCeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceee
Q 002898 71 GLSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (869)
Q Consensus 71 GLsv~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLii 148 (869)
|+...|++++-+..+.. ..-+.+|+.+||++| -|..-+|. ..++ ...|+++||||.|| |+++.|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrl-ndL~~~n~------i~l~---siTYlVlDEADrML-DMgFEp--- 386 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRL-NDLQMDNV------INLA---SITYLVLDEADRML-DMGFEP--- 386 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchH-hhhhhcCe------eeee---eeEEEEecchhhhh-cccccH---
Confidence 99999999986644443 345679999999996 34333332 2345 89999999999997 998877
Q ss_pred cCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCc
Q 002898 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (869)
Q Consensus 149 Sg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~ 228 (869)
++.+++-...+ ++++.+|. + .|++-|... |..+++
T Consensus 387 ------------qIrkilldiRP---------DRqtvmTS-----------------A--TWP~~VrrL--a~sY~K--- 421 (629)
T KOG0336|consen 387 ------------QIRKILLDIRP---------DRQTVMTS-----------------A--TWPEGVRRL--AQSYLK--- 421 (629)
T ss_pred ------------HHHHHhhhcCC---------cceeeeec-----------------c--cCchHHHHH--HHHhhh---
Confidence 55554433322 45555442 1 244444432 233332
Q ss_pred ceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHH
Q 002898 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308 (869)
Q Consensus 229 dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~i 308 (869)
|-+-+-..++.+
T Consensus 422 ------------------------------------ep~~v~vGsLdL-------------------------------- 433 (629)
T KOG0336|consen 422 ------------------------------------EPMIVYVGSLDL-------------------------------- 433 (629)
T ss_pred ------------------------------------CceEEEecccce--------------------------------
Confidence 111111111111
Q ss_pred hCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCc
Q 002898 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (869)
Q Consensus 309 Y~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~ 388 (869)
+.+-+-+ ...+..++.+|| ++++...+.+...-.|+|||.+.-.++.||.-|.-.||..+-||++.+
T Consensus 434 -----~a~~sVk-------Q~i~v~~d~~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~ 500 (629)
T KOG0336|consen 434 -----VAVKSVK-------QNIIVTTDSEKL-EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNRE 500 (629)
T ss_pred -----eeeeeee-------eeEEecccHHHH-HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChh
Confidence 1111111 012345677788 456666666777889999999999999999999999999999999877
Q ss_pred chhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 389 ~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
|..+|..+-. +.| .-+|+|||++|.||+|+.
T Consensus 501 Q~DrE~al~~~ksG-~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 501 QSDREMALEDFKSG-EVRILVATDLASRGLDVP 532 (629)
T ss_pred hhhHHHHHHhhhcC-ceEEEEEechhhcCCCch
Confidence 8888877765 666 568999999999999994
No 41
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=230.95 Aligned_cols=281 Identities=20% Similarity=0.228 Sum_probs=199.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC------CcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G------~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|.|+|.-++|+-+-|+ +|...||+|||.+|+||++-.-|.. -.|.|++|+++||.|-+.-..++..|..|+
T Consensus 203 ~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~ 282 (691)
T KOG0338|consen 203 KPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDIT 282 (691)
T ss_pred CCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccce
Confidence 69999999999888888 8999999999999999997444432 379999999999999999999999999999
Q ss_pred EEEEcCCCCH--HHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCC
Q 002898 74 VGLIQRGMIP--EERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (869)
Q Consensus 74 v~~i~~~~~~--~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (869)
||+..||++- |+....-..|||++|||+| .|+||+... . .+. ++.++|+||||+|| |++
T Consensus 283 ~~L~vGGL~lk~QE~~LRs~PDIVIATPGRl-IDHlrNs~s----f-~ld---siEVLvlDEADRML-eeg--------- 343 (691)
T KOG0338|consen 283 VGLAVGGLDLKAQEAVLRSRPDIVIATPGRL-IDHLRNSPS----F-NLD---SIEVLVLDEADRML-EEG--------- 343 (691)
T ss_pred eeeeecCccHHHHHHHHhhCCCEEEecchhH-HHHhccCCC----c-ccc---ceeEEEechHHHHH-HHH---------
Confidence 9999999884 4444555679999999997 566655433 2 234 89999999999998 554
Q ss_pred CCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceE
Q 002898 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (869)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYi 231 (869)
+-.++++++..++. +||.+ |||++. ...|.... +-.| .+.+.
T Consensus 344 ------FademnEii~lcpk---------~RQTm-----------------LFSATM--teeVkdL~-slSL-~kPvr-- 385 (691)
T KOG0338|consen 344 ------FADEMNEIIRLCPK---------NRQTM-----------------LFSATM--TEEVKDLA-SLSL-NKPVR-- 385 (691)
T ss_pred ------HHHHHHHHHHhccc---------cccce-----------------eehhhh--HHHHHHHH-Hhhc-CCCeE--
Confidence 34578999998864 77877 898874 34444332 1122 32221
Q ss_pred EECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCC
Q 002898 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (869)
Q Consensus 232 V~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l 311 (869)
+.||+++-+.. +| ..||
T Consensus 386 ------ifvd~~~~~a~-------~L--------------------------------------------tQEF------ 402 (691)
T KOG0338|consen 386 ------IFVDPNKDTAP-------KL--------------------------------------------TQEF------ 402 (691)
T ss_pred ------EEeCCccccch-------hh--------------------------------------------hHHH------
Confidence 22343221111 11 1122
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchh
Q 002898 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (869)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~ 391 (869)
+.|-+.+.- .+-.-++..|.+.. ..-++||+.|.+.+..+.=+|--.|+...-||+...|.+
T Consensus 403 --iRIR~~re~--------------dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~Q 464 (691)
T KOG0338|consen 403 --IRIRPKREG--------------DREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQ 464 (691)
T ss_pred --heecccccc--------------ccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHH
Confidence 223222211 11111233343332 467999999999999999999889999999999765655
Q ss_pred hHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 392 REAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 392 ~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
|=..+-..--..-.|+|||++|.||.||.
T Consensus 465 RlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 465 RLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 54444443344668999999999999995
No 42
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=5.7e-23 Score=248.34 Aligned_cols=129 Identities=20% Similarity=0.235 Sum_probs=102.4
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-c--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-T--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~--G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
+||++|..++..+++|+ |+...||+|||++|.||++ .+| . +..+.+++|++.||.+..+.+..+. ..|++++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL-~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVL-SALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHH-HHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEE
Confidence 69999999999999998 9999999999999999996 555 3 3478999999999999999999886 56899999
Q ss_pred EcCCCCHHHHHhcc-CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 77 IQRGMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 77 i~~~~~~~~rk~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
..|+.+.++|+... +++|+++||..+....|.++.. -...++ ++.++||||||.++
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~---~~~~l~---~l~~vViDEah~~~ 170 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHAR---WARFLR---RLRYVVIDECHSYR 170 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhH---HHHHHh---cCCEEEEeChhhcc
Confidence 88888877665433 4799999996543223322111 112355 89999999999974
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=2.3e-22 Score=225.74 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=102.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+++|..+...+.+|+ |+.+.||+|||++|.+|+. ..+ .+..+.|++|+..||.|-.+.+..+...+++.+.
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l-~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~ 128 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAAL-QLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCH 128 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEE
Confidence 58999999999999888 9999999999999999986 444 3567999999999999999999999999999998
Q ss_pred EEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
...++....... ..-.++|+++|++.+ ++.++.. ..... .++++||||||.++
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~---~i~lvViDEah~~~ 183 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRV-YDMIDKR------HLRVD---DLKLFILDEADEML 183 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHH-HHHHHhC------Ccccc---cccEEEEecHHHHH
Confidence 888776543332 233479999999986 4555422 12234 89999999999986
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=3.3e-22 Score=237.33 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=176.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|+|..++..+++|+ ++.|.||.|||++|.+|+++ .+..+.||+|...|+.+..+.+. .+|+.+.++.+
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~---~~g~tlVisPl~sL~~dqv~~l~----~~gi~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV---LDGLTLVVSPLISLMKDQVDQLL----ANGVAAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH---cCCCEEEEecHHHHHHHHHHHHH----HcCCcEEEEcC
Confidence 47799999999999988 99999999999999999973 35578999999999998776655 46999999988
Q ss_pred CCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 80 GMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 80 ~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+.+.+++...+ ..+|+|+||..+.-+.+.+.+ ... ++.++||||||.++ +-+..
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l-------~~~---~l~~iVIDEaH~i~-~~G~~--------- 157 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHL-------AHW---NPALLAVDEAHCIS-QWGHD--------- 157 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHH-------hhC---CCCEEEEeCccccc-cccCc---------
Confidence 88776654433 358999999987533333222 123 78999999999974 21100
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
-...|..+..+... +.
T Consensus 158 -fr~~y~~L~~l~~~-------------------------------------------------------~p-------- 173 (607)
T PRK11057 158 -FRPEYAALGQLRQR-------------------------------------------------------FP-------- 173 (607)
T ss_pred -ccHHHHHHHHHHHh-------------------------------------------------------CC--------
Confidence 00001000000000 00
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH-HHHHHHHhCCC
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~iY~l~ 312 (869)
+ ..+.++|+|+... ..++.+.+++.
T Consensus 174 --------------------------------~----------------------~~~v~lTAT~~~~~~~di~~~l~l~ 199 (607)
T PRK11057 174 --------------------------------T----------------------LPFMALTATADDTTRQDIVRLLGLN 199 (607)
T ss_pred --------------------------------C----------------------CcEEEEecCCChhHHHHHHHHhCCC
Confidence 0 0134677777653 33445555443
Q ss_pred --eEEeC-CCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 313 --VIEVP-TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 313 --vv~IP-t~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
++.+. .++|..+. . ......+...++..+.. ..|.++||||+|++.++.++..|.+.|+++..+||++..
T Consensus 200 ~~~~~~~~~~r~nl~~----~-v~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~ 272 (607)
T PRK11057 200 DPLIQISSFDRPNIRY----T-LVEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDN 272 (607)
T ss_pred CeEEEECCCCCCccee----e-eeeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCH
Confidence 22232 23333221 1 11222334445555543 467899999999999999999999999999999998766
Q ss_pred hhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+|+..+-. +.| .-.|.|||+++|||+||.
T Consensus 273 ~~R~~i~~~F~~g-~~~VLVaT~a~~~GIDip 303 (607)
T PRK11057 273 DVRADVQEAFQRD-DLQIVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHHHHHHHCC-CCCEEEEechhhccCCCC
Confidence 666543333 345 467999999999999994
No 45
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.91 E-value=4.8e-24 Score=230.74 Aligned_cols=276 Identities=22% Similarity=0.298 Sum_probs=197.9
Q ss_pred CCCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----------CCcEEEEecCHHHHHHHHHHHHHHh
Q 002898 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----------G~~V~VvT~ndyLA~RDae~~~~ly 67 (869)
+.|+|+|+.|.++.+.|+ |.-.-||+||||+|+||+...||. |.--.||||+++||+|-++-+..++
T Consensus 191 ~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 191 VHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 469999999999999999 899999999999999999999985 4456899999999999999999998
Q ss_pred hhcC------CeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhh
Q 002898 68 RFLG------LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 68 ~~LG------Lsv~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
..|+ +++++..|+++..+.- ..-+.+|+++||+++ -|.|-..+ ..+. -+.|+.+||||+| +
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL-~DmL~KK~------~sLd---~CRyL~lDEADRm-i 339 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRL-MDMLAKKI------MSLD---ACRYLTLDEADRM-I 339 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchH-HHHHHHhh------ccHH---HHHHhhhhhHHHH-h
Confidence 8775 5566677888755443 345679999999996 45553332 2233 6789999999998 5
Q ss_pred hcCCCceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHH
Q 002898 140 DEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALK 219 (869)
Q Consensus 140 Dea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~ 219 (869)
|.++. ..+..+...|.. +||++ |||++.| +.|.+-
T Consensus 340 DmGFE---------------ddir~iF~~FK~---------QRQTL-----------------LFSATMP--~KIQ~F-- 374 (610)
T KOG0341|consen 340 DMGFE---------------DDIRTIFSFFKG---------QRQTL-----------------LFSATMP--KKIQNF-- 374 (610)
T ss_pred hccch---------------hhHHHHHHHHhh---------hhhee-----------------eeecccc--HHHHHH--
Confidence 88754 255555555542 66766 8998864 444432
Q ss_pred HHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcc
Q 002898 220 AKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299 (869)
Q Consensus 220 A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~ 299 (869)
|+.-+.+ +|--+-|| .|.|.
T Consensus 375 AkSALVK------------PvtvNVGR------------------------------------------------AGAAs 394 (610)
T KOG0341|consen 375 AKSALVK------------PVTVNVGR------------------------------------------------AGAAS 394 (610)
T ss_pred HHhhccc------------ceEEeccc------------------------------------------------ccccc
Confidence 2222211 11111122 11111
Q ss_pred cHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 002898 300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (869)
Q Consensus 300 te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~ 379 (869)
++|+ ..+-|+..++|.--+. +| ..+..-||||||+...+++.+.++|.-.|+.
T Consensus 395 -----------ldVi-------------QevEyVkqEaKiVylL-eC--LQKT~PpVLIFaEkK~DVD~IhEYLLlKGVE 447 (610)
T KOG0341|consen 395 -----------LDVI-------------QEVEYVKQEAKIVYLL-EC--LQKTSPPVLIFAEKKADVDDIHEYLLLKGVE 447 (610)
T ss_pred -----------hhHH-------------HHHHHHHhhhhhhhHH-HH--hccCCCceEEEeccccChHHHHHHHHHccce
Confidence 0110 0000333344433332 22 2356678999999999999999999999999
Q ss_pred eEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 380 HNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 380 ~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
...+|+++.+.+|.+.|-+ ++| +..|.|||+.|..|.|+.
T Consensus 448 avaIHGGKDQedR~~ai~afr~g-kKDVLVATDVASKGLDFp 488 (610)
T KOG0341|consen 448 AVAIHGGKDQEDRHYAIEAFRAG-KKDVLVATDVASKGLDFP 488 (610)
T ss_pred eEEeecCcchhHHHHHHHHHhcC-CCceEEEecchhccCCCc
Confidence 9999999888888888888 788 568999999999999994
No 46
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=234.52 Aligned_cols=358 Identities=22% Similarity=0.261 Sum_probs=240.7
Q ss_pred CCCchhhHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHH---------HHHc-----CCc--EEEEecCHHHHHHHHH
Q 002898 1 MRHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYL---------NALT-----GEG--VHVVTVNDYLAQRDAE 61 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~lpa~l---------~AL~-----G~~--V~VvT~ndyLA~RDae 61 (869)
.+|+++|-+..++...|+ +.-+.||+||||+|++|++- ..+. +.. ..|+||+++||.|...
T Consensus 202 s~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~ 281 (731)
T KOG0347|consen 202 SRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQ 281 (731)
T ss_pred CCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHH
Confidence 379999999999999996 88899999999999999974 2221 234 6899999999999999
Q ss_pred HHHHHhhhcCCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhh
Q 002898 62 WMERVHRFLGLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 62 ~~~~ly~~LGLsv~~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
-+..+..+-|++|..|+||+. .|+|-..|..|||++|||+| + ..+.... ..++.=+.+.++||||+|+|+-
T Consensus 282 Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRl-w----eli~e~n--~~l~~~k~vkcLVlDEaDRmve 354 (731)
T KOG0347|consen 282 HLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRL-W----ELIEEDN--THLGNFKKVKCLVLDEADRMVE 354 (731)
T ss_pred HHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHH-H----HHHHhhh--hhhhhhhhceEEEEccHHHHhh
Confidence 999999999999999999988 55677888889999999997 2 3232211 1122122889999999999986
Q ss_pred hcCCCceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHH
Q 002898 140 DEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALK 219 (869)
Q Consensus 140 Dea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~ 219 (869)
+. -|.....++..|.+ ..+. ..+|.+ .||++..+.+...
T Consensus 355 kg----------------hF~Els~lL~~L~e-~~~~---~qrQTl-----------------VFSATlt~~~~~~---- 393 (731)
T KOG0347|consen 355 KG----------------HFEELSKLLKHLNE-EQKN---RQRQTL-----------------VFSATLTLVLQQP---- 393 (731)
T ss_pred hc----------------cHHHHHHHHHHhhh-hhcc---cccceE-----------------EEEEEeehhhcCh----
Confidence 65 45566777776652 1221 133443 4555432221111
Q ss_pred HHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHh---hhCC-------ccccCcceeeeeeehhHhhhcC
Q 002898 220 AKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA---KEGL-------KIQADSVVVAQITYQSLFKLYP 289 (869)
Q Consensus 220 A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaiea---KEgv-------~i~~e~~t~a~It~q~~Fr~Y~ 289 (869)
++...+ .++ ++ +-+.|-||. |-|+ .++|++
T Consensus 394 ~~~~~k-~~~---------------------k~--~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~---------------- 433 (731)
T KOG0347|consen 394 LSSSRK-KKD---------------------KE--DELNAKIQHLMKKIGFRGKPKIIDLTPQS---------------- 433 (731)
T ss_pred hHHhhh-ccc---------------------hh--hhhhHHHHHHHHHhCccCCCeeEecCcch----------------
Confidence 111100 000 00 011111110 1111 112222
Q ss_pred cccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHH
Q 002898 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYL 369 (869)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~l 369 (869)
+||++-.+-+ +..|+ --+|+--..|.+ ++ -| ..||||+||..+..|
T Consensus 434 ------~ta~~l~Es~--------I~C~~----~eKD~ylyYfl~--------------ry-PG-rTlVF~NsId~vKRL 479 (731)
T KOG0347|consen 434 ------ATASTLTESL--------IECPP----LEKDLYLYYFLT--------------RY-PG-RTLVFCNSIDCVKRL 479 (731)
T ss_pred ------hHHHHHHHHh--------hcCCc----cccceeEEEEEe--------------ec-CC-ceEEEechHHHHHHH
Confidence 2222210000 01122 111111122222 11 12 369999999999999
Q ss_pred HHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccc
Q 002898 370 SDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVE 449 (869)
Q Consensus 370 s~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (869)
+-+|...+|+.-.|||.|.|..|=..+-..+-.+..|.|||+.|.||.||.
T Consensus 480 t~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp----------------------------- 530 (731)
T KOG0347|consen 480 TVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP----------------------------- 530 (731)
T ss_pred HHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC-----------------------------
Confidence 999999999999999988777777778888888999999999999999994
Q ss_pred cccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCC
Q 002898 450 VDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLG 529 (869)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (869)
T Consensus 531 -------------------------------------------------------------------------------- 530 (731)
T KOG0347|consen 531 -------------------------------------------------------------------------------- 530 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCch
Q 002898 530 PTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTS 609 (869)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~ 609 (869)
|==|||--.-+-+.-|--.+-||++|-+..|-|.++++=++ +.
T Consensus 531 ----------------------------~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e--~~------- 573 (731)
T KOG0347|consen 531 ----------------------------GVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE--VG------- 573 (731)
T ss_pred ----------------------------CcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH--hH-------
Confidence 22389988888888899999999999999999999988666 21
Q ss_pred hHHHHHhhcCCCCCCcc
Q 002898 610 WAVDLISRITNDEDMPI 626 (869)
Q Consensus 610 ~~~~~~~~~~~~~~~~i 626 (869)
...+++..+...++-||
T Consensus 574 ~~~KL~ktL~k~~dlpi 590 (731)
T KOG0347|consen 574 PLKKLCKTLKKKEDLPI 590 (731)
T ss_pred HHHHHHHHHhhccCCCc
Confidence 23466677776677666
No 47
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3e-22 Score=222.74 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=208.3
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------CC--cEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------GE--GVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~------G~--~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
.||++|-.+.+.-+.|+ |.-.+||+|||.+|+.|+..+-+. |. -..|++|+++||.|.+.+...|.+..|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 58999999999999999 778899999999999999987542 43 347899999999999999999999999
Q ss_pred CeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeec
Q 002898 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (869)
Q Consensus 72 Lsv~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (869)
|.+.+++++.+.-++ ...-+|.|+++||+++ .|.+ ... ...++ ...|+|+||+|+|+ |.++.|
T Consensus 325 l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRl-id~V----kmK--atn~~---rvS~LV~DEadrmf-dmGfe~---- 389 (731)
T KOG0339|consen 325 LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRL-IDMV----KMK--ATNLS---RVSYLVLDEADRMF-DMGFEP---- 389 (731)
T ss_pred ceEEEeecCCcHHHHHHhhhcCCeEEEechHHH-HHHH----Hhh--cccce---eeeEEEEechhhhh-ccccHH----
Confidence 999999999884443 3446789999999996 3433 221 12334 68999999999996 887665
Q ss_pred CCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcc
Q 002898 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (869)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~d 229 (869)
++..|.....+ ++|++ +|+++. ...|..+ |+.++.-.+
T Consensus 390 -----------qVrSI~~hirp---------drQtl-----------------lFsaTf--~~kIe~l--ard~L~dpV- 427 (731)
T KOG0339|consen 390 -----------QVRSIKQHIRP---------DRQTL-----------------LFSATF--KKKIEKL--ARDILSDPV- 427 (731)
T ss_pred -----------HHHHHHhhcCC---------cceEE-----------------Eeeccc--hHHHHHH--HHHHhcCCe-
Confidence 78888887765 56776 788774 4445544 344432111
Q ss_pred eEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHh
Q 002898 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (869)
Q Consensus 230 YiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY 309 (869)
+|+-++ +- +|-+ -||
T Consensus 428 ------rvVqg~-----vg-------------ean~------------dIT----------------------------- 442 (731)
T KOG0339|consen 428 ------RVVQGE-----VG-------------EANE------------DIT----------------------------- 442 (731)
T ss_pred ------eEEEee-----hh-------------cccc------------chh-----------------------------
Confidence 111111 00 0000 000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
.+ -.|+.+...||..++..+.+....| .||||..-...+|.++..|+-.|+.+.+||+++.|
T Consensus 443 --Q~---------------V~V~~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdq 504 (731)
T KOG0339|consen 443 --QT---------------VSVCPSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQ 504 (731)
T ss_pred --he---------------eeeccCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhh
Confidence 01 1245678999999998888776555 89999999999999999999999999999998877
Q ss_pred hhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+|-..+-..--....|.|||+.|.||+||.
T Consensus 505 a~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 505 AERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 7776555543333578999999999999997
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=1.2e-21 Score=235.34 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=103.8
Q ss_pred CCchhhHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|++.|..++..+.+| ++++..||+|||++|++|++.....|.+|.|++|++.||.|.++.+..++..+|++
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~ 340 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIR 340 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcE
Confidence 5889999999988765 49999999999999999998666788999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|++++|+++..+|+..+ .+||++||++.+ .+. ...+ .+.++||||+|.+
T Consensus 341 v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------v~~~---~l~lvVIDE~Hrf 395 (681)
T PRK10917 341 VALLTGSLKGKERREILEAIASGEADIVIGTHALI-----QDD-------VEFH---NLGLVIIDEQHRF 395 (681)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh-----ccc-------chhc---ccceEEEechhhh
Confidence 99999999977765543 379999999764 221 1234 7999999999985
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=3.2e-21 Score=228.28 Aligned_cols=263 Identities=21% Similarity=0.245 Sum_probs=176.4
Q ss_pred CchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
+.|+|.-++.++++|+ ++.|.||.|||++|.+|+.+ .+..+.||+|...|..+..+.+.. +|+.+..+.++
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~----~gi~~~~~~s~ 86 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRA----AGVAAAYLNST 86 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHH----cCCcEEEEeCC
Confidence 5688999999999888 99999999999999999973 455678999999999987776654 69999999988
Q ss_pred CCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcC--CCceeecCCC
Q 002898 81 MIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG--RNPLLISGEA 152 (869)
Q Consensus 81 ~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea--~tPLiiSg~~ 152 (869)
.+..++...+ ..+|+|+|+..+.-+.++..+. .. .+.++||||||.+. +-+ +.|
T Consensus 87 ~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~-------~~---~l~~iViDEaH~i~-~~g~~frp------- 148 (591)
T TIGR01389 87 LSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQ-------RI---PIALVAVDEAHCVS-QWGHDFRP------- 148 (591)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHh-------cC---CCCEEEEeCCcccc-cccCccHH-------
Confidence 8876655432 4699999999875444433221 22 78999999999974 210 000
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
.|..+..+...++.
T Consensus 149 -----~y~~l~~l~~~~~~------------------------------------------------------------- 162 (591)
T TIGR01389 149 -----EYQRLGSLAERFPQ------------------------------------------------------------- 162 (591)
T ss_pred -----HHHHHHHHHHhCCC-------------------------------------------------------------
Confidence 11111111111100
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH-HHHHHHHhCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM 311 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~iY~l 311 (869)
..+.++|+|+... ..++.+..++
T Consensus 163 --------------------------------------------------------~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 163 --------------------------------------------------------VPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred --------------------------------------------------------CCEEEEEeCCCHHHHHHHHHHcCC
Confidence 0134566666543 2334444443
Q ss_pred C--eEEe-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCc
Q 002898 312 P--VIEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (869)
Q Consensus 312 ~--vv~I-Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~ 388 (869)
. .+.+ +.++|... ..+ .....+...+.+.+.. ..++++||||.|...++.+++.|...|++...+|+++.
T Consensus 187 ~~~~~~~~~~~r~nl~----~~v-~~~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~ 259 (591)
T TIGR01389 187 ADANEFITSFDRPNLR----FSV-VKKNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLS 259 (591)
T ss_pred CCCCeEecCCCCCCcE----EEE-EeCCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 2 1222 22233221 111 1233455566666654 23789999999999999999999999999999999866
Q ss_pred chhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 389 ~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
..+|+..+-. ..| .-.|.|||+.+|+|+|+.
T Consensus 260 ~~~R~~i~~~F~~g-~~~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 260 NKVRAENQEDFLYD-DVKVMVATNAFGMGIDKP 291 (591)
T ss_pred HHHHHHHHHHHHcC-CCcEEEEechhhccCcCC
Confidence 6666543333 345 458999999999999973
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=1.5e-21 Score=237.82 Aligned_cols=269 Identities=17% Similarity=0.128 Sum_probs=171.9
Q ss_pred CchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
+.|+|..++.+++.|+ |+.|.||.||||+|.+|+++ .+..+.||+|...|+......+. .+|+.+..+.++
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~---~~GiTLVISPLiSLmqDQV~~L~----~~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMNLL----QANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHH----hCCCeEEEEECC
Confidence 5789999999999998 99999999999999999974 45678999999999985443332 269999999999
Q ss_pred CCHHHHHhcc--------CCCeEEECCCchh-hhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC--Cceeec
Q 002898 81 MIPEERRSNY--------RCDITYTNNSELG-FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR--NPLLIS 149 (869)
Q Consensus 81 ~~~~~rk~aY--------~~DI~YgT~~e~~-fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~--tPLiiS 149 (869)
++..++...+ ..+|+|+||..+. .+.+.+.+.. ...+ ..+.++||||||.|+ +-+. -|
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~----L~~~--~~LslIVIDEAHcVS-qWGhDFRp---- 602 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN----LNSR--GLLARFVIDEAHCVS-QWGHDFRP---- 602 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh----hhhc--cccceeccCcchhhh-hcccchHH----
Confidence 8866554322 3599999999874 2444444421 1111 157889999999985 2210 00
Q ss_pred CCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcc
Q 002898 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (869)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~d 229 (869)
.|..+..+...++.
T Consensus 603 --------dYr~L~~Lr~~fp~---------------------------------------------------------- 616 (1195)
T PLN03137 603 --------DYQGLGILKQKFPN---------------------------------------------------------- 616 (1195)
T ss_pred --------HHHHHHHHHHhCCC----------------------------------------------------------
Confidence 11111111111100
Q ss_pred eEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH-HHHHHHH
Q 002898 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKM 308 (869)
Q Consensus 230 YiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~i 308 (869)
..+.++|+||... .+++.+.
T Consensus 617 -----------------------------------------------------------vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 617 -----------------------------------------------------------IPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred -----------------------------------------------------------CCeEEEEecCCHHHHHHHHHH
Confidence 0123456666543 2334444
Q ss_pred hCCCeE-Ee--CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeec
Q 002898 309 FQMPVI-EV--PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (869)
Q Consensus 309 Y~l~vv-~I--Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna 385 (869)
.++.-. ++ ..++|..+ ..+..........|...+... ..+.+.||||.|...+|.++..|...|+++..+||
T Consensus 638 L~l~~~~vfr~Sf~RpNL~----y~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHA 712 (1195)
T PLN03137 638 LGLVNCVVFRQSFNRPNLW----YSVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHG 712 (1195)
T ss_pred cCCCCcEEeecccCccceE----EEEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeC
Confidence 444311 11 11222211 111111111223444444332 23568999999999999999999999999999999
Q ss_pred CCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 386 RPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 386 ~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
++...+|+..+-. ..| ...|.|||+.+|||+|+.
T Consensus 713 GLs~eeR~~vqe~F~~G-ei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKD-EINIICATVAFGMGINKP 747 (1195)
T ss_pred CCCHHHHHHHHHHHhcC-CCcEEEEechhhcCCCcc
Confidence 8776666644434 334 558999999999999994
No 51
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.89 E-value=7.8e-22 Score=235.39 Aligned_cols=281 Identities=19% Similarity=0.252 Sum_probs=210.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
+|.|+|-.++|++..|+ |...+||+|||++|.||.+.+-+. |--+.|++||++||.|..+|+.+|...+|
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999 999999999999999999965442 34578999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeec
Q 002898 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (869)
Q Consensus 72 Lsv~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (869)
+.+.+++++....+. ...-.|+|++||+|++ .|.| +.+. ..|.. -|...|+++||+|.|+ |.++.|
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRm-iD~l----~~n~-grvtn-lrR~t~lv~deaDrmf-dmgfeP---- 534 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRM-IDIL----CANS-GRVTN-LRRVTYLVLDEADRMF-DMGFEP---- 534 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchh-hhhH----hhcC-Ccccc-ccccceeeechhhhhh-eeccCc----
Confidence 999999998764433 2345599999999997 4544 3221 12221 1267799999999999 999988
Q ss_pred CCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcc
Q 002898 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (869)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~d 229 (869)
+.-.+++.+.+ .+|.. +|+++. .+.+. ++ |..++++.+.
T Consensus 535 -----------q~~~Ii~nlrp---------drQtv-----------------lfSatf--pr~m~-~l-a~~vl~~Pve 573 (997)
T KOG0334|consen 535 -----------QITRILQNLRP---------DRQTV-----------------LFSATF--PRSME-AL-ARKVLKKPVE 573 (997)
T ss_pred -----------ccchHHhhcch---------hhhhh-----------------hhhhhh--hHHHH-HH-HHHhhcCCee
Confidence 33335555533 34433 577663 44444 44 5555544433
Q ss_pred eEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHh
Q 002898 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (869)
Q Consensus 230 YiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY 309 (869)
+||+ ..+++..+ |+
T Consensus 574 --------iiv~-~~svV~k~----------------------------V~----------------------------- 587 (997)
T KOG0334|consen 574 --------IIVG-GRSVVCKE----------------------------VT----------------------------- 587 (997)
T ss_pred --------EEEc-cceeEecc----------------------------ce-----------------------------
Confidence 2333 11111111 00
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
..-.|-..+.+|+..+.+.+.+..+ .-|++|||.+.+.+..+.+.|.+.|++|..||+...|
T Consensus 588 -----------------q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q 649 (997)
T KOG0334|consen 588 -----------------QVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQ 649 (997)
T ss_pred -----------------EEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCch
Confidence 0012234588999998888887766 5599999999999999999999999999999999888
Q ss_pred hhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+.|+..|.. +.| +-.++|||+.+.||+|++
T Consensus 650 ~dR~sti~dfK~~-~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 650 HDRSSTIEDFKNG-VVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHhHHHHHhcc-CceEEEehhhhhcccccc
Confidence 999988877 666 678999999999999996
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=3.4e-21 Score=236.20 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=101.0
Q ss_pred CCchhhHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|+++|..++..+.++ ++++..||+|||++|++|++-....|++|.|++|+..||.|.++.+..++..++++
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 4889999999988764 49999999999999999998666789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
++++.+..+..+++... .+||++||+. .|.. ....+ ++.++||||+|.+
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-----ll~~-------~v~f~---~L~llVIDEahrf 585 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHK-----LLQK-------DVKFK---DLGLLIIDEEQRF 585 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHH-----HhhC-------CCCcc---cCCEEEeeccccc
Confidence 99998887766554322 4799999983 2322 12234 8999999999985
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.88 E-value=1.3e-20 Score=231.70 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=96.6
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----------CCcEEEEecCHHHHHHHHHHHH-----
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----------GEGVHVVTVNDYLAQRDAEWME----- 64 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----------G~~V~VvT~ndyLA~RDae~~~----- 64 (869)
.|+|+|..+...+++|+ |+.+.||+|||++|.+|++ ..|. |..|.+|+|+..||.+.+..+.
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil-~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAII-DELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHH-HHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998 9999999999999999996 4432 2358999999999998876544
Q ss_pred --HHhh----hc-CCeEEEEcCCCCHHHHHhcc--CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechh
Q 002898 65 --RVHR----FL-GLSVGLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVD 135 (869)
Q Consensus 65 --~ly~----~L-GLsv~~i~~~~~~~~rk~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvD 135 (869)
.++. .+ +++|++..|+.+..+++... .+||+++|+..|. ++|.. ..-...++ ++.++||||||
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~-~ll~~----~~~~~~l~---~l~~VVIDE~H 182 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLA-ILLNS----PKFREKLR---TVKWVIVDEIH 182 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHH-HHhcC----hhHHHHHh---cCCEEEEechh
Confidence 2221 22 77888999998877765433 5799999999862 23321 10012345 89999999999
Q ss_pred hhh
Q 002898 136 SVL 138 (869)
Q Consensus 136 siL 138 (869)
.++
T Consensus 183 ~l~ 185 (876)
T PRK13767 183 SLA 185 (876)
T ss_pred hhc
Confidence 986
No 54
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.3e-21 Score=202.53 Aligned_cols=275 Identities=14% Similarity=0.223 Sum_probs=200.5
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|-.+|--+++.+++|+ |||.+.|.|||.++++-++ .++. .-+|.|++|+++||.|..+-...+...+|+.|-
T Consensus 49 kPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vl-q~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVL-QSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred CchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeee-eecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 57789999999999999 9999999999999988774 5442 237999999999999999999999999999998
Q ss_pred EEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 76 LIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 76 ~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
...|+.+ ...|+..|++++|-|||+++ +|.++.+. ++ .|....+|+||+|-|| +++
T Consensus 128 acigg~n~gedikkld~G~hvVsGtPGrv-~dmikr~~--------L~-tr~vkmlVLDEaDemL-~kg----------- 185 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHVVSGTPGRV-LDMIKRRS--------LR-TRAVKMLVLDEADEML-NKG----------- 185 (400)
T ss_pred EEecCCccchhhhhhcccceEeeCCCchH-HHHHHhcc--------cc-ccceeEEEeccHHHHH-Hhh-----------
Confidence 8777655 66788899999999999997 77775432 22 3499999999999998 443
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+-.++..+.+.|++ .-|+. ++|++ +++.|.... ..++...
T Consensus 186 ----fk~Qiydiyr~lp~---------~~Qvv-----------------~~SAT--lp~eilemt--~kfmtdp------ 225 (400)
T KOG0328|consen 186 ----FKEQIYDIYRYLPP---------GAQVV-----------------LVSAT--LPHEILEMT--EKFMTDP------ 225 (400)
T ss_pred ----HHHHHHHHHHhCCC---------CceEE-----------------EEecc--CcHHHHHHH--HHhcCCc------
Confidence 23356666677765 33444 56665 345555543 3333322
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
|.|.-.-.+-.. +|+.|+
T Consensus 226 ---vrilvkrdeltl------EgIKqf----------------------------------------------------- 243 (400)
T KOG0328|consen 226 ---VRILVKRDELTL------EGIKQF----------------------------------------------------- 243 (400)
T ss_pred ---eeEEEecCCCch------hhhhhh-----------------------------------------------------
Confidence 222221111111 112220
Q ss_pred EEeCCCCCcccccCCCeEEeChhH-HHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhh
Q 002898 314 IEVPTNLPNIRVDLPIQSFATARG-KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (869)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~-K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~ 392 (869)
.|-...++ |+.++++.--... -...+|||+|..++++|++.|.+.+....-+|+++++.+|
T Consensus 244 ----------------~v~ve~EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkER 305 (400)
T KOG0328|consen 244 ----------------FVAVEKEEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKER 305 (400)
T ss_pred ----------------eeeechhhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHH
Confidence 11234444 6677776544321 2346899999999999999999999999999999888888
Q ss_pred HHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 393 Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
++.+-. ++| ..+|.|+|+.-.||+|+.
T Consensus 306 d~im~dFRsg-~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 306 DKIMNDFRSG-KSRVLITTDVWARGIDVQ 333 (400)
T ss_pred HHHHHHhhcC-CceEEEEechhhccCCcc
Confidence 765444 677 679999999999999994
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.87 E-value=2e-20 Score=223.11 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=102.5
Q ss_pred CCchhhHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|++.|.-++..+..+ ++++..||+|||++|++|++.....|..|.|++|+..||.|-++.+..++..+|++
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 5889999999988765 49999999999999999998655678999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
+++++++++..+|+... .+||++||++.+ .+. .... .+.++||||+|.+
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll-----~~~-------~~~~---~l~lvVIDEaH~f 369 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALI-----QEK-------VEFK---RLALVIIDEQHRF 369 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH-----hcc-------cccc---ccceEEEechhhc
Confidence 99999999877765433 469999999754 222 1234 7899999999985
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.86 E-value=3.8e-20 Score=231.32 Aligned_cols=261 Identities=16% Similarity=0.126 Sum_probs=176.4
Q ss_pred CCchhhHHHHHHHhCC--------CeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDG--------SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--------~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|+++|..++..+..| .+++..||.|||++|+++++.....|++|.|++|+..||.|.++.+...+..++++
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 5889999999988776 49999999999999999998666779999999999999999999999999888999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCcee
Q 002898 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (869)
+.++.+..+..+++... .+||++||+. .|+.. .... .+.++||||+|.+-.
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-----lL~~~-------v~~~---~L~lLVIDEahrfG~-------- 736 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK-----LLQSD-------VKWK---DLGLLIVDEEHRFGV-------- 736 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH-----HHhCC-------CCHh---hCCEEEEechhhcch--------
Confidence 99998887776665432 4799999994 23221 1233 799999999999610
Q ss_pred ecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccC
Q 002898 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 148 iSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d 227 (869)
.. ...++.+.. +.+++ +++++- ..+.+..++ ..
T Consensus 737 ------------~~-~e~lk~l~~---------~~qvL-----------------l~SATp-iprtl~l~~---~g---- 769 (1147)
T PRK10689 737 ------------RH-KERIKAMRA---------DVDIL-----------------TLTATP-IPRTLNMAM---SG---- 769 (1147)
T ss_pred ------------hH-HHHHHhcCC---------CCcEE-----------------EEcCCC-CHHHHHHHH---hh----
Confidence 00 111122211 22233 344442 111111111 11
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 307 (869)
T Consensus 770 -------------------------------------------------------------------------------- 769 (1147)
T PRK10689 770 -------------------------------------------------------------------------------- 769 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCeEEeCCCCCcccccCCCeEE-eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEee
Q 002898 308 MFQMPVIEVPTNLPNIRVDLPIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLN 384 (869)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~-~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~--gi~~~vLn 384 (869)
..++.++..|+.. |......+. ........++..++ .+|..|+|||++++.++.+++.|++. ++++.++|
T Consensus 770 l~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lH 842 (1147)
T PRK10689 770 MRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 (1147)
T ss_pred CCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 1111222222221 111011111 11112233444444 34667999999999999999999987 78899999
Q ss_pred cCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 385 a~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
|.+.+.+++..+.+ ..| .-.|.|||++++||+||.
T Consensus 843 G~m~q~eRe~im~~Fr~G-k~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 843 GQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEECchhhcccccc
Confidence 99888788776666 445 679999999999999995
No 57
>PRK02362 ski2-like helicase; Provisional
Probab=99.84 E-value=1.4e-18 Score=210.91 Aligned_cols=130 Identities=25% Similarity=0.263 Sum_probs=100.1
Q ss_pred CCchhhHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
.|||+|..+... +++|+ |+.+.||+|||++|.+|++-....|..+.+|+|+..||.+-++.+..+. .+|++|+..+
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~-~~g~~v~~~t 101 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFE-ELGVRVGIST 101 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEe
Confidence 589999999887 66776 9999999999999999987444468899999999999999999998754 4699999999
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCC
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~t 144 (869)
|+.+...+. .-.+||+++|+..+ |.|..+ . ....+ .+.++||||+|.++ |..|-
T Consensus 102 Gd~~~~~~~-l~~~~IiV~Tpek~--~~llr~---~--~~~l~---~v~lvViDE~H~l~-d~~rg 155 (737)
T PRK02362 102 GDYDSRDEW-LGDNDIIVATSEKV--DSLLRN---G--APWLD---DITCVVVDEVHLID-SANRG 155 (737)
T ss_pred CCcCccccc-cCCCCEEEECHHHH--HHHHhc---C--hhhhh---hcCEEEEECccccC-CCcch
Confidence 987644322 22479999999884 444221 1 12234 79999999999874 54443
No 58
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3e-19 Score=200.32 Aligned_cols=131 Identities=24% Similarity=0.285 Sum_probs=102.3
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC----------CcEEEEecCHHHHHHHHHHHHHHhhh
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG----------EGVHVVTVNDYLAQRDAEWMERVHRF 69 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G----------~~V~VvT~ndyLA~RDae~~~~ly~~ 69 (869)
.|+.||-.++++|++|+ ++..+||+||||++++|++ ..|++ --..|+.|+++||.|.++-...+..-
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiV-q~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~ 237 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIV-QSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHH-HHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC
Confidence 48899999999999999 9999999999999999997 66654 35689999999999999999999876
Q ss_pred cCCeE-EEEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC
Q 002898 70 LGLSV-GLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 70 LGLsv-~~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (869)
+-.=| |++.||-. .+..|..-++.|.+||||++ -|++..... .... .+.|+|+||+|++| |-++
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRL-----vDHLknT~~-i~~s---~LRwlVlDEaDrll-eLGf 304 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRL-----VDHLKNTKS-IKFS---RLRWLVLDEADRLL-ELGF 304 (708)
T ss_pred ceEEeeceeecccccccHHHHHhcCceEEEcCchHH-----HHHHhccch-heee---eeeEEEecchhHHH-hccc
Confidence 54333 44555532 33445667899999999996 344443322 3333 69999999999987 6654
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.83 E-value=7.7e-19 Score=211.39 Aligned_cols=279 Identities=15% Similarity=0.091 Sum_probs=172.9
Q ss_pred CCchhhHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHc----CCcEEE-EecCHHHHHHHHHHHHHHhhhc---
Q 002898 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALT----GEGVHV-VTVNDYLAQRDAEWMERVHRFL--- 70 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~lpa~l~AL~----G~~V~V-vT~ndyLA~RDae~~~~ly~~L--- 70 (869)
.|||+|...+..++.|+ ++++.||+|||.+++++.+ ++. ..+..| ++|+++||.|.++.+..+.+.+
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll--~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~ 92 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLL--AVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDV 92 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhc--cccccccccceEEEeCchHHHHHHHHHHHHHHHHHhccc
Confidence 49999999999999997 5579999999997653332 331 223555 6699999999999999999877
Q ss_pred --------------------CCeEEEEcCCCC--HHHHHhccCCCeEEECCCchhhhHHHHhhccch---hh-------h
Q 002898 71 --------------------GLSVGLIQRGMI--PEERRSNYRCDITYTNNSELGFDYLRDNLAANS---EQ-------L 118 (869)
Q Consensus 71 --------------------GLsv~~i~~~~~--~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~---~~-------~ 118 (869)
+++|.+++|+.+ ++.+.....++|++|| .|++..+...+. .. -
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT-----~D~i~sr~L~~gYg~~~~~~pi~ag 167 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT-----VDMIGSRLLFSGYGCGFKSRPLHAG 167 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC-----HHHHcCCccccccccccccccchhh
Confidence 589999999866 4444455678999999 466654432100 00 0
Q ss_pred hccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHh
Q 002898 119 VMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMAL 198 (869)
Q Consensus 119 v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~ 198 (869)
.+. ...++|+|||| | |.++ ...+..+.+.+..... ...++++
T Consensus 168 ~L~---~v~~LVLDEAD--L-d~gF---------------~~~l~~Il~~l~rp~~----~rprQtL------------- 209 (844)
T TIGR02621 168 FLG---QDALIVHDEAH--L-EPAF---------------QELLKQIMNEQQRPPD----FLPLRVV------------- 209 (844)
T ss_pred hhc---cceEEEEehhh--h-cccc---------------HHHHHHHHHhcccCcc----cccceEE-------------
Confidence 133 68899999999 3 6543 3466677665421000 0123555
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeee
Q 002898 199 ETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQ 278 (869)
Q Consensus 199 ~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~ 278 (869)
+||++.+ ..+... +..++..+ +.+. | .....+...
T Consensus 210 ----LFSAT~p--~ei~~l--~~~~~~~p--~~i~------V-----------------------------~~~~l~a~k 244 (844)
T TIGR02621 210 ----ELTATSR--TDGPDR--TTLLSAED--YKHP------V-----------------------------LKKRLAAKK 244 (844)
T ss_pred ----EEecCCC--ccHHHH--HHHHccCC--ceee------c-----------------------------ccccccccc
Confidence 6777642 112221 22232221 1110 0 000001111
Q ss_pred eeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHH-HHhcCCcEE
Q 002898 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVES-MFRLGRPVL 357 (869)
Q Consensus 279 It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~-~~~~grPVL 357 (869)
+.. .+..+...|....+..+.. ....+..+|
T Consensus 245 i~q------------------------------------------------~v~v~~e~Kl~~lv~~L~~ll~e~g~~vL 276 (844)
T TIGR02621 245 IVK------------------------------------------------LVPPSDEKFLSTMVKELNLLMKDSGGAIL 276 (844)
T ss_pred eEE------------------------------------------------EEecChHHHHHHHHHHHHHHHhhCCCcEE
Confidence 100 0111223344343333322 235678999
Q ss_pred EEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHH----HHHH--Hc----CC-----C-ccEEEEcCCCcCCccee
Q 002898 358 VGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA----ETVA--QA----GR-----K-YAITISTNMAGRGTDII 420 (869)
Q Consensus 358 V~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea----~Iia--~A----G~-----~-g~VTIATnmAGRGTDIk 420 (869)
|||+|++.++.+++.|++.|+ ..||+++.+.+|+. .+.. +. |. . ..|.|||+.++||+||.
T Consensus 277 VF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId 353 (844)
T TIGR02621 277 VFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNIS 353 (844)
T ss_pred EEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCC
Confidence 999999999999999999988 78999887777762 2222 11 32 1 36999999999999996
No 60
>PRK00254 ski2-like helicase; Provisional
Probab=99.83 E-value=1.2e-18 Score=210.75 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=97.7
Q ss_pred CCchhhHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
.|||+|..+... +++|+ |+.+.||+|||++|.+|+.-..+ .|..+.+++|+..||.+-++.+..+ ..+|++|+..
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~~~g~~v~~~ 101 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-EKLGLRVAMT 101 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-hhcCCEEEEE
Confidence 589999999975 67776 99999999999999999974444 4678999999999999999998874 5689999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 78 ~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+|+.+...+. .-.+||+++|+..+ |.|..+ . ....+ .+.++||||+|.+.
T Consensus 102 ~Gd~~~~~~~-~~~~~IiV~Tpe~~--~~ll~~---~--~~~l~---~l~lvViDE~H~l~ 151 (720)
T PRK00254 102 TGDYDSTDEW-LGKYDIIIATAEKF--DSLLRH---G--SSWIK---DVKLVVADEIHLIG 151 (720)
T ss_pred eCCCCCchhh-hccCCEEEEcHHHH--HHHHhC---C--chhhh---cCCEEEEcCcCccC
Confidence 9987654332 23579999999875 333211 1 12234 89999999999874
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.83 E-value=5.7e-19 Score=205.47 Aligned_cols=293 Identities=16% Similarity=0.121 Sum_probs=167.6
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
.|+|.|..++..+++++ |+.+.||.|||+++.+.+....-.++ .|.|++|+..|+.|-.+.+..+...-...++.+.
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~ 193 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIY 193 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEe
Confidence 68999999988777654 99999999999986654321111334 8999999999999988888876654445555555
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCccc
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVAR 158 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~ 158 (869)
++... ...++|+++|+..+. ++. . .... .+.++||||||.+.-+
T Consensus 194 ~g~~~-----~~~~~I~VaT~qsl~-~~~--------~-~~~~---~~~~iIvDEaH~~~~~------------------ 237 (501)
T PHA02558 194 SGTAK-----DTDAPIVVSTWQSAV-KQP--------K-EWFD---QFGMVIVDECHLFTGK------------------ 237 (501)
T ss_pred cCccc-----CCCCCEEEeeHHHHh-hch--------h-hhcc---ccCEEEEEchhcccch------------------
Confidence 55432 135799999997752 111 1 1234 7999999999998521
Q ss_pred HHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEECCeEE
Q 002898 159 YPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (869)
Q Consensus 159 ~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ 238 (869)
....++..+... .| .+.||.- +.+... +... + ..+|. +.-|.+
T Consensus 238 --~~~~il~~~~~~-~~-------~lGLTAT-------------p~~~~~---~~~~--~--~~~fG-~i~~~v------ 280 (501)
T PHA02558 238 --SLTSIITKLDNC-KF-------KFGLTGS-------------LRDGKA---NILQ--Y--VGLFG-DIFKPV------ 280 (501)
T ss_pred --hHHHHHHhhhcc-ce-------EEEEecc-------------CCCccc---cHHH--H--HHhhC-CceEEe------
Confidence 122333334210 11 1233321 111000 0000 0 11221 111111
Q ss_pred EEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCC
Q 002898 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPT 318 (869)
Q Consensus 239 ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt 318 (869)
. ..+.+ ++|....+. ...+. -.|.. .+....+
T Consensus 281 -------------~----~~~li--~~g~l~~~~---~~~v~-----~~~~~------------~~~~~~~--------- 312 (501)
T PHA02558 281 -------------T----TSQLM--EEGQVTDLK---INSIF-----LRYPD------------EDRVKLK--------- 312 (501)
T ss_pred -------------c----HHHHH--hCCCcCCce---EEEEe-----ccCCH------------HHhhhhc---------
Confidence 0 01111 222221111 00000 00000 0000000
Q ss_pred CCCcccccCCCe--EEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHH
Q 002898 319 NLPNIRVDLPIQ--SFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAET 396 (869)
Q Consensus 319 ~~p~~R~d~~d~--i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~I 396 (869)
..+.... ...+...+...|++.+....+.|+++||+|.+++.++.|++.|.+.|+++.++++.++..+|++-+
T Consensus 313 -----~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 313 -----GEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred -----ccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 0000000 012334455667777776667899999999999999999999999999999999987777776432
Q ss_pred HHHcCCCccEEEEc-CCCcCCccee
Q 002898 397 VAQAGRKYAITIST-NMAGRGTDII 420 (869)
Q Consensus 397 ia~AG~~g~VTIAT-nmAGRGTDIk 420 (869)
-........|.||| +++|||.||.
T Consensus 388 ~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 388 KIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHhCCCCeEEEEEcceeccccccc
Confidence 22222245799999 9999999994
No 62
>PRK01172 ski2-like helicase; Provisional
Probab=99.83 E-value=1.1e-18 Score=209.69 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.+|++|..+...+.+|+ ++.+.||+|||+++.+|++-....|..+.+++|...||.+-++++..+. .+|++|+..++
T Consensus 22 ~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G 100 (674)
T PRK01172 22 ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIG 100 (674)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeC
Confidence 47899999999999887 9999999999999999987444568889999999999999999999864 58999999888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (869)
+.+...+. .-.+||+++|+..+ |.+..+ . ..... .+.++||||||.+. |+.+
T Consensus 101 ~~~~~~~~-~~~~dIiv~Tpek~--~~l~~~---~--~~~l~---~v~lvViDEaH~l~-d~~r 152 (674)
T PRK01172 101 DYDDPPDF-IKRYDVVILTSEKA--DSLIHH---D--PYIIN---DVGLIVADEIHIIG-DEDR 152 (674)
T ss_pred CCCCChhh-hccCCEEEECHHHH--HHHHhC---C--hhHHh---hcCEEEEecchhcc-CCCc
Confidence 76543322 23579999999874 433211 1 12344 79999999999864 5443
No 63
>PRK14701 reverse gyrase; Provisional
Probab=99.82 E-value=7.1e-19 Score=224.91 Aligned_cols=125 Identities=20% Similarity=0.251 Sum_probs=101.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcC--CeEEEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG--LSVGLI 77 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LG--Lsv~~i 77 (869)
.|+++|..++..+++|+ ++.|.||+|||+.+.+++...+..|..+.||+|+..||.|.++.+..+...+| +.+.++
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 58999999999999999 99999999999977777766677898999999999999999999999998875 566778
Q ss_pred cCCCCHHHHHhc----c--CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 78 QRGMIPEERRSN----Y--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 78 ~~~~~~~~rk~a----Y--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.++++..+++.. . .+||+|+|++.+ .+++.+ .... .+.++||||||+||
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL-~~~~~~--------l~~~---~i~~iVVDEAD~ml 213 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFL-ARNFPE--------MKHL---KFDFIFVDDVDAFL 213 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchh-HHhHHH--------HhhC---CCCEEEEECceecc
Confidence 888887765432 1 379999999854 333321 1113 79999999999997
No 64
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.80 E-value=5e-19 Score=201.35 Aligned_cols=282 Identities=21% Similarity=0.219 Sum_probs=194.5
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC----cEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~----~V~VvT~ndyLA~RDae~~~~ly~-~LGLsv 74 (869)
+|.+||+-++++.+.|. |+|.+.|.||||+|...|+ ..|.-+ +..||||++++|.|..+.+..+.. |-|+.|
T Consensus 47 ~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av-~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAV-ESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred CCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeee-hhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 69999999999999876 9999999999999998885 666543 578999999999999999999985 669999
Q ss_pred EEEcCCCC-HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 75 GLIQRGMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 75 ~~i~~~~~-~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
.+..||.+ ..++...-+|.|++||||++. .|-.+=+ +... +++++|+||||..+ |+.
T Consensus 126 svfIGGT~~~~d~~rlk~~rIvIGtPGRi~--qL~el~~-----~n~s---~vrlfVLDEADkL~-~t~----------- 183 (980)
T KOG4284|consen 126 SVFIGGTAHKLDLIRLKQTRIVIGTPGRIA--QLVELGA-----MNMS---HVRLFVLDEADKLM-DTE----------- 183 (980)
T ss_pred EEEecCchhhhhhhhhhhceEEecCchHHH--HHHHhcC-----CCcc---ceeEEEeccHHhhh-chh-----------
Confidence 99999987 456667778999999999963 2222111 2223 89999999999975 532
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
.+-..++.++..|+. .||+. -|+++ +.+.+.++| ++ +| +|.- +|+
T Consensus 184 ---sfq~~In~ii~slP~---------~rQv~-----------------a~SAT--Yp~nLdn~L-sk-~m-rdp~-lVr 228 (980)
T KOG4284|consen 184 ---SFQDDINIIINSLPQ---------IRQVA-----------------AFSAT--YPRNLDNLL-SK-FM-RDPA-LVR 228 (980)
T ss_pred ---hHHHHHHHHHHhcch---------hheee-----------------EEecc--CchhHHHHH-HH-Hh-cccc-eee
Confidence 245678888888864 67776 46666 356788887 33 33 3332 222
Q ss_pred CC--eEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCC
Q 002898 234 NG--KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (869)
Q Consensus 234 d~--~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l 311 (869)
.+ .++++ |+.|++-
T Consensus 229 ~n~~d~~L~---------------GikQyv~------------------------------------------------- 244 (980)
T KOG4284|consen 229 FNADDVQLF---------------GIKQYVV------------------------------------------------- 244 (980)
T ss_pred cccCCceee---------------chhheee-------------------------------------------------
Confidence 11 01110 2333222
Q ss_pred CeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchh
Q 002898 312 PVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (869)
Q Consensus 312 ~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~ 391 (869)
.+|+.- .. -..|.-+-++...|...|-- -..||||.++-.++.++..|+..|+++..+.+.|.+.+
T Consensus 245 ---~~~s~n-ns-----veemrlklq~L~~vf~~ipy-----~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 245 ---AKCSPN-NS-----VEEMRLKLQKLTHVFKSIPY-----VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKD 310 (980)
T ss_pred ---eccCCc-ch-----HHHHHHHHHHHHHHHhhCch-----HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhH
Confidence 222210 00 00111122333333333321 12599999999999999999999999999999887766
Q ss_pred hHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 392 REAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 392 ~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
|--.+-. ++. .-+|+|||++..||+|-.
T Consensus 311 Rl~a~~~lr~f-~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 311 RLLAVDQLRAF-RVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhhc-eEEEEEecchhhccCCcc
Confidence 5433332 333 458999999999999963
No 65
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.6e-18 Score=184.89 Aligned_cols=274 Identities=17% Similarity=0.247 Sum_probs=198.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC----cEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~----~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
+|-|+|.-++++.+.|+ +|..+.|.|||-++.+|.+ ..+.-+ +..|+.|+++||-+-+.-+..+-+.+|+.|.
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~L-ekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vm 185 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVL-EKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVM 185 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhh-hhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEE
Confidence 79999999999999999 9999999999999999996 666433 5789999999999999999999999999999
Q ss_pred EEcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 76 LIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 76 ~i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+.+||.+-.+ -|..-..++++|||+++ . |.+... --.+. .+..+|+||||.+|.-+
T Consensus 186 vttGGT~lrDDI~Rl~~~VH~~vgTPGRI-l----DL~~Kg--Va~ls---~c~~lV~DEADKlLs~~------------ 243 (459)
T KOG0326|consen 186 VTTGGTSLRDDIMRLNQTVHLVVGTPGRI-L----DLAKKG--VADLS---DCVILVMDEADKLLSVD------------ 243 (459)
T ss_pred EecCCcccccceeeecCceEEEEcCChhH-H----HHHhcc--cccch---hceEEEechhhhhhchh------------
Confidence 9999876433 33444469999999996 3 433322 12345 78999999999988333
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+-+.+.+++..|++ ++|++ |||++.|+ .|.+ +.-+++ + .-|.|
T Consensus 244 ----F~~~~e~li~~lP~---------~rQil-----------------lySATFP~--tVk~-Fm~~~l-~--kPy~I- 286 (459)
T KOG0326|consen 244 ----FQPIVEKLISFLPK---------ERQIL-----------------LYSATFPL--TVKG-FMDRHL-K--KPYEI- 286 (459)
T ss_pred ----hhhHHHHHHHhCCc---------cceee-----------------EEecccch--hHHH-HHHHhc-c--Cccee-
Confidence 33477888888864 78888 89988653 2222 212232 1 22433
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
-++|| .|+.-||.
T Consensus 287 ----NLM~e-------------------------------Ltl~GvtQ-------------------------------- 299 (459)
T KOG0326|consen 287 ----NLMEE-------------------------------LTLKGVTQ-------------------------------- 299 (459)
T ss_pred ----ehhhh-------------------------------hhhcchhh--------------------------------
Confidence 11221 11111110
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhH
Q 002898 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (869)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~E 393 (869)
..-|+.+.+|..-+-....+. .-+ ..+|||+|.+.+|.|+....+.|.+|-.+||+|.+..|-
T Consensus 300 ---------------yYafV~e~qKvhCLntLfskL-qIN-QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRN 362 (459)
T KOG0326|consen 300 ---------------YYAFVEERQKVHCLNTLFSKL-QIN-QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRN 362 (459)
T ss_pred ---------------heeeechhhhhhhHHHHHHHh-ccc-ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhh
Confidence 123788888988765555443 223 457999999999999999999999999999987665554
Q ss_pred HHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 394 AETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 394 a~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.-.-. +-| .-+..|||++.-||+||.
T Consensus 363 rVFHdFr~G-~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 363 RVFHDFRNG-KCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhhhhhcc-ccceeeehhhhhcccccc
Confidence 33322 445 447889999999999995
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=99.78 E-value=2.9e-17 Score=206.13 Aligned_cols=125 Identities=24% Similarity=0.277 Sum_probs=96.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+++|..+++.+++|+ ++.+.||+|||+.+.+++...+..|..+.|++|++.||.|.++.+..+....|+.+.++.+
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g 159 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYY 159 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEc
Confidence 69999999999999998 8999999999974444343345568899999999999999999999999999999887776
Q ss_pred CCC--HHHHHhc------cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMI--PEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~--~~~rk~a------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+ ..++... -.+||++||++.+ .+++. ..... .++++||||||+||
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL-----~~~~~----~l~~~---~~~~lVvDEaD~~L 214 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQFL-----SKNFD----ELPKK---KFDFVFVDDVDAVL 214 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHHH-----HHHHH----hcccc---ccCEEEEEChHHhh
Confidence 532 2232221 2479999999875 33332 11122 69999999999997
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.77 E-value=3.2e-17 Score=181.88 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=57.6
Q ss_pred HHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEeecCCcchhhHH---HHHH--HcCCCccEEEEcCCCcCCcc
Q 002898 346 VESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREA---ETVA--QAGRKYAITISTNMAGRGTD 418 (869)
Q Consensus 346 i~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~--~~vLna~~~~~~~Ea---~Iia--~AG~~g~VTIATnmAGRGTD 418 (869)
+......++++||||++++.++.+++.|++.+.+ +..+|++..+.+|+. +++. +.| ...|.|||+.++||+|
T Consensus 215 l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT~~~~~GiD 293 (358)
T TIGR01587 215 LLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVATQVIEASLD 293 (358)
T ss_pred HHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEECcchhceec
Confidence 3344467899999999999999999999988774 788999765656543 2343 333 4469999999999999
Q ss_pred ee
Q 002898 419 II 420 (869)
Q Consensus 419 Ik 420 (869)
|.
T Consensus 294 i~ 295 (358)
T TIGR01587 294 IS 295 (358)
T ss_pred cC
Confidence 95
No 68
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.77 E-value=3.3e-16 Score=173.09 Aligned_cols=269 Identities=22% Similarity=0.227 Sum_probs=177.5
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------G~~V~VvT~ndyLA~RDae~~~~ly~~L 70 (869)
+|.-||--+++..++|+ +|.+.||+|||+++++|++-.-|. |-...|+.|+.+||+|-+..+..+-.++
T Consensus 41 kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999 999999999999999999733232 3356899999999999999999999998
Q ss_pred C--CeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCce
Q 002898 71 G--LSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (869)
Q Consensus 71 G--Lsv~~i~~~~~~~~rk~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPL 146 (869)
+ |.+.-+.++|+...-+.+ -..||+++||+.+ -++++.+.- .... .+.|++|||||-+|.=.
T Consensus 121 ~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~l-----l~~~~~~~~-~~~~---~l~~LVvDEADLllsfG----- 186 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKL-----LRHLAAGVL-EYLD---SLSFLVVDEADLLLSFG----- 186 (569)
T ss_pred HHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHH-----HHHHhhccc-hhhh---heeeEEechhhhhhhcc-----
Confidence 7 555666667765554433 3479999999985 334443321 2344 89999999999987322
Q ss_pred eecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 002898 147 LISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR 226 (869)
Q Consensus 147 iiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~ 226 (869)
.-..+..+...|++. | |.. |.|++ +..-|. +| +.+|-.
T Consensus 187 -----------Yeedlk~l~~~LPr~--~-------Q~~-----------------LmSAT--l~dDv~-~L--KkL~l~ 224 (569)
T KOG0346|consen 187 -----------YEEDLKKLRSHLPRI--Y-------QCF-----------------LMSAT--LSDDVQ-AL--KKLFLH 224 (569)
T ss_pred -----------cHHHHHHHHHhCCch--h-------hhe-----------------eehhh--hhhHHH-HH--HHHhcc
Confidence 112344555555431 1 112 22222 122222 22 222221
Q ss_pred CcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHH
Q 002898 227 DVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (869)
Q Consensus 227 d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 306 (869)
+
T Consensus 225 n------------------------------------------------------------------------------- 225 (569)
T KOG0346|consen 225 N------------------------------------------------------------------------------- 225 (569)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHhCCCeEE-e-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEee
Q 002898 307 KMFQMPVIE-V-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (869)
Q Consensus 307 ~iY~l~vv~-I-Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLn 384 (869)
+|+. . -...|..-+-...+|..++.+|+.-+....+-..=+| ..|||.+|+..+=.|--.|.+.||+.-+||
T Consensus 226 -----PviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksciLN 299 (569)
T KOG0346|consen 226 -----PVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCILN 299 (569)
T ss_pred -----CeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhhhc
Confidence 1110 0 0111111122234666788889876555544332234 679999999999999999999999999999
Q ss_pred cCCcchhhHHHHHH--HcCCCccEEEEcCCC
Q 002898 385 ARPKYAAREAETVA--QAGRKYAITISTNMA 413 (869)
Q Consensus 385 a~~~~~~~Ea~Iia--~AG~~g~VTIATnmA 413 (869)
+......| -+||. .+| .-.+.|||+--
T Consensus 300 seLP~NSR-~Hii~QFNkG-~YdivIAtD~s 328 (569)
T KOG0346|consen 300 SELPANSR-CHIIEQFNKG-LYDIVIATDDS 328 (569)
T ss_pred ccccccch-hhHHHHhhCc-ceeEEEEccCc
Confidence 96433344 36776 456 56899999865
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.76 E-value=1.8e-16 Score=199.08 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=98.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHH-HHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE---
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYL-NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG--- 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l-~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~--- 75 (869)
.|+++|..+++.++.|+ ++.+.||+|||+ +++|+.. .+..|..|.|++|++.||.|.++.+..+...+|+.+.
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 69999999999999999 999999999997 5555543 3446889999999999999999999999999998754
Q ss_pred EEcCCCCHHHHHhc------cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk~a------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++.|+++..++... =.+||++||++.+ .+++.. ... .++++||||||+||
T Consensus 157 ~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL-----~~~~~~-----l~~---~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 157 AYHSRLPTKEKKEFMERIENGDFDILITTTMFL-----SKNYDE-----LGP---KFDFIFVDDVDALL 212 (1171)
T ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----HHHHHH-----hcC---CCCEEEEeChHhhh
Confidence 46788887665332 1379999999864 343321 112 68999999999997
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.75 E-value=1.3e-16 Score=201.71 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=83.5
Q ss_pred EecCCCcHHHHHHHHHHHHHHc-------------CCcEEEEecCHHHHHHHHHHHHHHhh------------hcCCeEE
Q 002898 21 EMKTGEGKTLVSTLAAYLNALT-------------GEGVHVVTVNDYLAQRDAEWMERVHR------------FLGLSVG 75 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~-------------G~~V~VvT~ndyLA~RDae~~~~ly~------------~LGLsv~ 75 (869)
...||+|||++|.||++..-+. |..|.+|+|...||.+....+...+. .+|++|+
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 3579999999999999744332 34689999999999999988764322 3689999
Q ss_pred EEcCCCCHHHHHhc--cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
..+|+.+..+|+.. -.+||+++||..| +++|... ....++ +++++||||+|.++
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL-~~LLtsk-----~r~~L~---~Vr~VIVDE~H~L~ 137 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESL-YLMLTSR-----ARETLR---GVETVIIDEVHAVA 137 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHH-HHHHhhh-----hhhhhc---cCCEEEEecHHHhc
Confidence 99999998887543 3579999999987 3344321 112455 89999999999987
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.75 E-value=2.1e-16 Score=192.67 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=95.4
Q ss_pred CchhhHHHHH-HHhCCCeEEecCCCcHHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 3 HFDVQIIGGA-VLHDGSIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 3 p~dvQl~g~~-~L~~G~IaEm~TGEGKTLva~lpa~l~AL~--G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
|.+-|..... ++.++-|+.+.||.|||+++.+++. +.+. |..|.|++|+..|+.+.++.+..++...+..+..+.+
T Consensus 16 ~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~-~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g 94 (773)
T PRK13766 16 ARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIA-ERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTG 94 (773)
T ss_pred ccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHH-HHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 4455655544 4445559999999999999988886 4444 6789999999999999888888776555568888999
Q ss_pred CCCHHHHHhcc-CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~~~~rk~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.++.+|...| .++|+++|+.-+..|.+...+ ... .+.++||||||.+.
T Consensus 95 ~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~-------~~~---~~~liVvDEaH~~~ 144 (773)
T PRK13766 95 EVSPEKRAELWEKAKVIVATPQVIENDLIAGRI-------SLE---DVSLLIFDEAHRAV 144 (773)
T ss_pred CCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCC-------Chh---hCcEEEEECCcccc
Confidence 88888888878 569999999876555543221 123 78999999999753
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.75 E-value=2e-16 Score=188.86 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=85.8
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHH---------HHHHHH--HHHH----cCCcEEEEecCHHHHHHHHHHHHHHh
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV---------STLAAY--LNAL----TGEGVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv---------a~lpa~--l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly 67 (869)
++|......+.+|+ |++..||+|||.+ |++|.+ ++++ .+..|.|++|+..||.+-++.++...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 57888888888888 9999999999976 333332 1222 24589999999999999888888765
Q ss_pred hh---cCCeEEEEcCCCCHHHHH-hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh
Q 002898 68 RF---LGLSVGLIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (869)
Q Consensus 68 ~~---LGLsv~~i~~~~~~~~rk-~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (869)
.+ -|+++.+..++++..... ..-..+|+++|+.-. + ..+. ++.++||||||.++.+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~----l----------~~L~---~v~~VVIDEaHEr~~~ 306 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT----L----------NKLF---DYGTVIIDEVHEHDQI 306 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc----c----------cccc---cCCEEEccccccCccc
Confidence 44 478888889988743221 222569999996420 1 1234 8999999999998644
No 73
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=178.59 Aligned_cols=129 Identities=25% Similarity=0.302 Sum_probs=101.4
Q ss_pred CCchhhHHHHHHHh---------C-CC-eEEecCCCcHHHHHHHHHHHHHHcCC-----cEEEEecCHHHHHHHHHHHHH
Q 002898 2 RHFDVQIIGGAVLH---------D-GS-IAEMKTGEGKTLVSTLAAYLNALTGE-----GVHVVTVNDYLAQRDAEWMER 65 (869)
Q Consensus 2 rp~dvQl~g~~~L~---------~-G~-IaEm~TGEGKTLva~lpa~l~AL~G~-----~V~VvT~ndyLA~RDae~~~~ 65 (869)
|-||||-.-.+.++ . |. .+-..||+||||++++|+. ++|..+ ++.||.|+..||-|.+..|..
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV-Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV-QLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH-HHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 56999977777663 2 22 6789999999999999996 888877 468999999999999999999
Q ss_pred HhhhcCCeEEEEcCCCC--HHHHHhccC-----CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 66 VHRFLGLSVGLIQRGMI--PEERRSNYR-----CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 66 ly~~LGLsv~~i~~~~~--~~~rk~aY~-----~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+-..-||.|+...+..+ .+.++.+-. .||+++|||+| .|+|+. . ....+. ++.|+||||||+||
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL-VDHl~~----~-k~f~Lk---~LrfLVIDEADRll 308 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL-VDHLNN----T-KSFDLK---HLRFLVIDEADRLL 308 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH-HHhccC----C-CCcchh---hceEEEechHHHHH
Confidence 99999999988776543 555554432 49999999997 455532 2 224455 89999999999987
Q ss_pred hhc
Q 002898 139 IDE 141 (869)
Q Consensus 139 iDe 141 (869)
|.
T Consensus 309 -~q 310 (620)
T KOG0350|consen 309 -DQ 310 (620)
T ss_pred -HH
Confidence 65
No 74
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.75 E-value=2.3e-16 Score=192.07 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=85.6
Q ss_pred hHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHH-hhhcCCeEEEEcCCCCHHH
Q 002898 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERV-HRFLGLSVGLIQRGMIPEE 85 (869)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~l-y~~LGLsv~~i~~~~~~~~ 85 (869)
|++..+.=++.-|++..||+|||..+.+|++-....+..|.|+.|++.+|.+-++.+... ...+|.+||+.....+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 455555434444999999999999999998743335568999999999999999998644 4577888887665422
Q ss_pred HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh
Q 002898 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (869)
Q Consensus 86 rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (869)
+..-..+|+|+|++.| .+.+... ..+. ++.++||||||...+|
T Consensus 86 -~~s~~t~I~v~T~G~L-----lr~l~~d---~~L~---~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 86 -KVSRRTRLEVVTEGIL-----TRMIQDD---PELD---GVGALIFDEFHERSLD 128 (819)
T ss_pred -ccCCCCcEEEECCcHH-----HHHHhhC---cccc---cCCEEEEeccchhhhc
Confidence 1223468999999986 2233222 2355 8999999999964334
No 75
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=6.5e-17 Score=184.26 Aligned_cols=280 Identities=21% Similarity=0.217 Sum_probs=189.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------CCcEEEEecCHHHHHHHHHHHHHHh--h
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------GEGVHVVTVNDYLAQRDAEWMERVH--R 68 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------G~~V~VvT~ndyLA~RDae~~~~ly--~ 68 (869)
-|.|+|..+++++++++ +|+..||+||||+|.+|++. -|. |-.+.|+.|++.||.|++.+|.++- .
T Consensus 158 ~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~-~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~ 236 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQ-HLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDE 236 (593)
T ss_pred CCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHH-HHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCC
Confidence 38899999999999998 99999999999999999874 443 3357999999999999999999987 4
Q ss_pred hcCCeEEEEcCCCCHHHHHhc---cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCc
Q 002898 69 FLGLSVGLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (869)
Q Consensus 69 ~LGLsv~~i~~~~~~~~rk~a---Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tP 145 (869)
--++.+........+.++... -.+||..+||.++ ...+...+-..-++ +++++++||+|..+-.
T Consensus 237 ~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri-----~~~~~~~~~~idl~---~V~~lV~dEaD~lfe~----- 303 (593)
T KOG0344|consen 237 GTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI-----VGLLGLGKLNIDLS---KVEWLVVDEADLLFEP----- 303 (593)
T ss_pred CCchhhhhcccccchhhccchhHHHHHHHHhcCHHHH-----HHHhcCCCccchhh---eeeeEeechHHhhhCh-----
Confidence 445554433333223322211 1368999999884 34444433234456 9999999999997632
Q ss_pred eeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 002898 146 LLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYR 225 (869)
Q Consensus 146 LiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~ 225 (869)
..++.+.+.+...+.. ..+. ..+|+++. ..+|..-+ .....
T Consensus 304 ----------~~f~~Qla~I~sac~s----------~~i~---------------~a~FSat~--~~~VEE~~--~~i~~ 344 (593)
T KOG0344|consen 304 ----------EFFVEQLADIYSACQS----------PDIR---------------VALFSATI--SVYVEEWA--ELIKS 344 (593)
T ss_pred ----------hhHHHHHHHHHHHhcC----------cchh---------------hhhhhccc--cHHHHHHH--HHhhc
Confidence 2256667776665542 1111 12677653 23333221 11110
Q ss_pred cCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHH
Q 002898 226 RDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF 305 (869)
Q Consensus 226 ~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef 305 (869)
+ . ..+|| |.+-+|
T Consensus 345 -~---~----~~viv----------------------------------------------------g~~~sa------- 357 (593)
T KOG0344|consen 345 -D---L----KRVIV----------------------------------------------------GLRNSA------- 357 (593)
T ss_pred -c---c----eeEEE----------------------------------------------------ecchhH-------
Confidence 0 0 01111 111111
Q ss_pred HHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHH-HHCCCCeEEee
Q 002898 306 LKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLN 384 (869)
Q Consensus 306 ~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L-~~~gi~~~vLn 384 (869)
.-+.++..+.-.++..|.-|+.+.|..- -.=|+|||..|++.+..|...| .-.+|...++|
T Consensus 358 ----------------~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh 419 (593)
T KOG0344|consen 358 ----------------NETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIH 419 (593)
T ss_pred ----------------hhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEe
Confidence 1133344444457788999988888653 3468999999999999999999 78899999999
Q ss_pred cCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 385 a~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
|...+.++|..+-+ ++| .-.|.||||+.+||+||+
T Consensus 420 ~e~~~~qrde~~~~FR~g-~IwvLicTdll~RGiDf~ 455 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIG-KIWVLICTDLLARGIDFK 455 (593)
T ss_pred cccchhHHHHHHHHHhcc-CeeEEEehhhhhcccccc
Confidence 97666777766666 455 669999999999999997
No 76
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.73 E-value=1.8e-16 Score=193.31 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=83.4
Q ss_pred hHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEEcCCCCHHH
Q 002898 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLIQRGMIPEE 85 (869)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly-~~LGLsv~~i~~~~~~~~ 85 (869)
|++..+.=++.-|++..||+|||.++.+|++-....+.+|.|+.|++.+|.+-++.+...+ ..+|.+||...++.+.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~-- 89 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK-- 89 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc--
Confidence 4444443344449999999999999998886433334479999999999999999986554 5678999987665321
Q ss_pred HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 86 rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..-..+|+|+|+|.| .++| ... ..+. ++.++||||+|..
T Consensus 90 --~~~~t~I~v~T~G~L-lr~l----~~d---~~L~---~v~~IIlDEaHER 128 (812)
T PRK11664 90 --VGPNTRLEVVTEGIL-TRMI----QRD---PELS---GVGLVILDEFHER 128 (812)
T ss_pred --cCCCCcEEEEChhHH-HHHH----hhC---CCcC---cCcEEEEcCCCcc
Confidence 122357999999986 3333 222 2345 8999999999973
No 77
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2.6e-16 Score=171.08 Aligned_cols=278 Identities=18% Similarity=0.267 Sum_probs=187.3
Q ss_pred CCchhhHHHHHHHh----CCCeEEecCCCcHHHHHHHHHHHHH---HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 2 RHFDVQIIGGAVLH----DGSIAEMKTGEGKTLVSTLAAYLNA---LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~----~G~IaEm~TGEGKTLva~lpa~l~A---L~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
+|-.+|-.+.+.|+ ++-|||.+.|+|||.+|+|.++... +.-..+.+++|+++||.+--+-+....+|-+|++
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita 191 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTA 191 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeE
Confidence 78899999999875 5679999999999999999886321 2335778899999999998887777777779999
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCC
Q 002898 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASK 154 (869)
Q Consensus 75 ~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~ 154 (869)
.++..+. ...|-..-.++|+.||++-+ .||.+..-. .... ...+.++||||+|+--.++.
T Consensus 192 ~yair~s-k~~rG~~i~eqIviGTPGtv-~Dlm~klk~-----id~~---kikvfVlDEAD~Mi~tqG~~---------- 251 (477)
T KOG0332|consen 192 SYAIRGS-KAKRGNKLTEQIVIGTPGTV-LDLMLKLKC-----IDLE---KIKVFVLDEADVMIDTQGFQ---------- 251 (477)
T ss_pred EEEecCc-ccccCCcchhheeeCCCccH-HHHHHHHHh-----hChh---hceEEEecchhhhhhccccc----------
Confidence 9988765 22233344578999999997 566543111 2223 78899999999997333321
Q ss_pred CcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEEC
Q 002898 155 DVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234 (869)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 234 (869)
..+-.+...++ .+-|.. |||++. .+.+. ++ |.. +|+|
T Consensus 252 -----D~S~rI~~~lP---------~~~Qll-----------------LFSATf--~e~V~-~F-a~k--------ivpn 288 (477)
T KOG0332|consen 252 -----DQSIRIMRSLP---------RNQQLL-----------------LFSATF--VEKVA-AF-ALK--------IVPN 288 (477)
T ss_pred -----ccchhhhhhcC---------CcceEE-----------------eeechh--HHHHH-HH-HHH--------hcCC
Confidence 12233334443 234444 688762 33333 12 112 2333
Q ss_pred CeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002898 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI 314 (869)
Q Consensus 235 ~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv 314 (869)
.+++++- .+-+++.. +|.+-
T Consensus 289 ~n~i~Lk-----------------------------~eel~L~~-----------------------------IkQly-- 308 (477)
T KOG0332|consen 289 ANVIILK-----------------------------REELALDN-----------------------------IKQLY-- 308 (477)
T ss_pred Cceeeee-----------------------------hhhccccc-----------------------------hhhhe--
Confidence 3333332 11111111 12111
Q ss_pred EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHH
Q 002898 315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA 394 (869)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea 394 (869)
+.-..+++|+++|++ +-....-||. +|||.+...+++|+..|.+.|-...+||+.+.-.+|.+
T Consensus 309 ---------------v~C~~~~~K~~~l~~-lyg~~tigqs-iIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ 371 (477)
T KOG0332|consen 309 ---------------VLCACRDDKYQALVN-LYGLLTIGQS-IIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAA 371 (477)
T ss_pred ---------------eeccchhhHHHHHHH-HHhhhhhhhe-EEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHH
Confidence 112567899999887 5455556655 68999999999999999999999999999864444443
Q ss_pred HHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 395 ETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 395 ~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
-|.. +.| ...|.|+||...||+|+.
T Consensus 372 ii~~Fr~g-~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 372 IIDRFREG-KEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHhcC-cceEEEEechhhcccccc
Confidence 3333 566 568999999999999995
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.72 E-value=1.4e-15 Score=170.18 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=82.5
Q ss_pred hHHHHHHHhCCC----eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhc----CCeEEEEc
Q 002898 7 QIIGGAVLHDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL----GLSVGLIQ 78 (869)
Q Consensus 7 Ql~g~~~L~~G~----IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~L----GLsv~~i~ 78 (869)
|..+.-++.+|. ++.+.||+|||+++.+|+.. .+..+.+++|+..|+.+.++.+..++..+ ++.+....
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~ 78 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVS 78 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEec
Confidence 566667777665 67899999999999999862 34578899999999999999999998755 67777777
Q ss_pred CCCCHHH--------------------HHhc--cCCCeEEECCCchhhhHHHHhhccchh---hhhccCCCCceEEEeec
Q 002898 79 RGMIPEE--------------------RRSN--YRCDITYTNNSELGFDYLRDNLAANSE---QLVMRWPKPFHFAIVDE 133 (869)
Q Consensus 79 ~~~~~~~--------------------rk~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~---~~v~r~~R~~~~aIVDE 133 (869)
+....+. |... -..+|+ .||.++ |++|..+....+. ...+. .+.++|+||
T Consensus 79 g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~il-lT~p~~-l~~llr~~~~~~~~~~~~~~~---~~~~iV~DE 153 (357)
T TIGR03158 79 KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIIL-LTNPDI-FVYLTRFAYIDRGDIAAGFYT---KFSTVIFDE 153 (357)
T ss_pred CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEE-EecHHH-HHHHHhhhccCcccchhhhhc---CCCEEEEec
Confidence 6532221 1111 134454 666554 5665333211111 11234 789999999
Q ss_pred hhhh
Q 002898 134 VDSV 137 (869)
Q Consensus 134 vDsi 137 (869)
+|..
T Consensus 154 ~H~~ 157 (357)
T TIGR03158 154 FHLY 157 (357)
T ss_pred cccc
Confidence 9984
No 79
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.6e-16 Score=173.81 Aligned_cols=275 Identities=17% Similarity=0.191 Sum_probs=195.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHH-H--HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLN-A--LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~-A--L~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
+|-.+|--|++...+|. +++.++|.|||.+|++++... . ..-..|.++.|+++||+|+.+-+.+++...+.+|..
T Consensus 48 kPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred CchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 58899999999999999 999999999999999888633 1 123478899999999999999999999999999987
Q ss_pred EcCCCC---HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 77 IQRGMI---PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 77 i~~~~~---~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
..++.+ ..++...-.++||.||++++ +|.|.-+ .+.++ +....++||+|-||...
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV-~dml~~~------~l~~~---~iKmfvlDEaDEmLs~g------------ 185 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRV-FDMLNRG------SLSTD---GIKMFVLDEADEMLSRG------------ 185 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhH-HHhhccc------ccccc---ceeEEeecchHhhhccc------------
Confidence 777654 22333445579999999996 6666332 23344 89999999999999665
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+-.++..+.+.+++.. |+. |++++.+ .|+.-. ++.+++..+--.|+
T Consensus 186 ----fkdqI~~if~~lp~~v---------Qv~-----------------l~SAT~p--~~vl~v--t~~f~~~pv~i~vk 231 (397)
T KOG0327|consen 186 ----FKDQIYDIFQELPSDV---------QVV-----------------LLSATMP--SDVLEV--TKKFMREPVRILVK 231 (397)
T ss_pred ----hHHHHHHHHHHcCcch---------hhe-----------------eecccCc--HHHHHH--HHHhccCceEEEec
Confidence 3446777777776531 333 6777653 343322 34554322111111
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
.+.+|+.-|..
T Consensus 232 -------------------------------------k~~ltl~gikq-------------------------------- 242 (397)
T KOG0327|consen 232 -------------------------------------KDELTLEGIKQ-------------------------------- 242 (397)
T ss_pred -------------------------------------chhhhhhheee--------------------------------
Confidence 00112221111
Q ss_pred EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhH
Q 002898 314 IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAARE 393 (869)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~E 393 (869)
+ .+...+++|...+++... .-+..+|||++.+.+..+...|..+|..+..+|+.+.+.+|+
T Consensus 243 --~-------------~i~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~ 303 (397)
T KOG0327|consen 243 --F-------------YINVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERD 303 (397)
T ss_pred --e-------------eeeccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhh
Confidence 0 011223336666665554 345679999999999999999999999999999998888887
Q ss_pred HHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 394 AETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 394 a~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
-....--.-..+|.|.|+.+.||.||.
T Consensus 304 ~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 304 TLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred HHHHHhhcCCceEEeeccccccccchh
Confidence 665553333789999999999999995
No 80
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=2.2e-16 Score=173.84 Aligned_cols=279 Identities=19% Similarity=0.194 Sum_probs=203.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-----cEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-----GVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-----~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.|+|+|-..++.+++|+ ++-..||+|||.+++||++ .+|.++ ...|+.||++||.+-..-...+.++.++.+
T Consensus 43 ~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~-e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~ 121 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMI-EKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQ 121 (529)
T ss_pred CCCchhcccccceeeccccceeeecCCcchhhHHHHHH-HHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhh
Confidence 49999999999999999 8888999999999999997 566543 689999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 75 ~~i~~~~~~~~rk~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
++++++-+.+++-... +.||+.+||+.+- ++.-.. .+.++ ...|++.||+|+++ .++
T Consensus 122 s~~~ggD~~eeqf~~l~~npDii~ATpgr~~------h~~vem-~l~l~---sveyVVfdEadrlf-emg---------- 180 (529)
T KOG0337|consen 122 SLLVGGDSIEEQFILLNENPDIIIATPGRLL------HLGVEM-TLTLS---SVEYVVFDEADRLF-EMG---------- 180 (529)
T ss_pred hhhcccchHHHHHHHhccCCCEEEecCceee------eeehhe-ecccc---ceeeeeehhhhHHH-hhh----------
Confidence 9999987777765554 5899999999962 111111 13455 89999999999987 333
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCc--HHHHHHHHHHHHHHhccCcce
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDP--WARFVMNALKAKEFYRRDVQY 230 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~--~~~~i~~Al~A~~l~~~d~dY 230 (869)
+.++..+++..++. ++|.. +||++-+ +.... +.-...+++
T Consensus 181 -----fqeql~e~l~rl~~---------~~QTl-----------------lfSatlp~~lv~fa------kaGl~~p~l- 222 (529)
T KOG0337|consen 181 -----FQEQLHEILSRLPE---------SRQTL-----------------LFSATLPRDLVDFA------KAGLVPPVL- 222 (529)
T ss_pred -----hHHHHHHHHHhCCC---------cceEE-----------------EEeccCchhhHHHH------HccCCCCce-
Confidence 34578888888864 45555 7887643 11221 111111111
Q ss_pred EEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhC
Q 002898 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQ 310 (869)
Q Consensus 231 iV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~ 310 (869)
|=+|. .++-++-|+
T Consensus 223 -------VRldv-------etkise~lk---------------------------------------------------- 236 (529)
T KOG0337|consen 223 -------VRLDV-------ETKISELLK---------------------------------------------------- 236 (529)
T ss_pred -------EEeeh-------hhhcchhhh----------------------------------------------------
Confidence 00121 001011000
Q ss_pred CCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcch
Q 002898 311 MPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (869)
Q Consensus 311 l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~ 390 (869)
+. .+..-.++|..++...+.... .....+||+.+...+|.+...|...|+.+..+.+.+.++
T Consensus 237 ~~-----------------f~~~~~a~K~aaLl~il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~ 298 (529)
T KOG0337|consen 237 VR-----------------FFRVRKAEKEAALLSILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQE 298 (529)
T ss_pred hh-----------------eeeeccHHHHHHHHHHHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChH
Confidence 00 113445678877765554432 244689999999999999999999999999988877777
Q ss_pred hhHHHHHHHcCCCccEEEEcCCCcCCcceecCCC
Q 002898 391 AREAETVAQAGRKYAITISTNMAGRGTDIILGGN 424 (869)
Q Consensus 391 ~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~ 424 (869)
+|-..+-..-|.++.+.|.|+.|.||.||.++.|
T Consensus 299 aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 299 ARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred hhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 7766777777778999999999999999999865
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.67 E-value=5.7e-15 Score=177.48 Aligned_cols=279 Identities=21% Similarity=0.264 Sum_probs=184.4
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------cEEE--EecCHHHHHHHHHHHHHHhhhc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHV--VTVNDYLAQRDAEWMERVHRFL 70 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-------~V~V--vT~ndyLA~RDae~~~~ly~~L 70 (869)
.|.|+|..+.+.+++|+ ++-..||+|||++|.||++ +.|... +|++ |||=..|+...-..+....+.+
T Consensus 22 ~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil-~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~ 100 (814)
T COG1201 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI-NELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL 100 (814)
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHH-HHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999 9999999999999999996 666432 3665 5666789888777788888899
Q ss_pred CCeEEEEcCCCCHHHHHhccC--CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceee
Q 002898 71 GLSVGLIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 148 (869)
Q Consensus 71 GLsv~~i~~~~~~~~rk~aY~--~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLii 148 (869)
|+.|.+-.|++++.+|+..-. .||+..||..|+.-.. ...-...++ ++.|+||||+|.+...+.
T Consensus 101 G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~-----~~~~r~~l~---~vr~VIVDEiHel~~sKR------ 166 (814)
T COG1201 101 GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLN-----SPKFRELLR---DVRYVIVDEIHALAESKR------ 166 (814)
T ss_pred CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhc-----CHHHHHHhc---CCcEEEeehhhhhhcccc------
Confidence 999999999999888775543 4999999999753222 111124556 899999999999752221
Q ss_pred cCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCc
Q 002898 149 SGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDV 228 (869)
Q Consensus 149 Sg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~ 228 (869)
-+.|+= +.+ +...+-
T Consensus 167 ----------------------------------G~~Lsl-~Le--------------------------RL~~l~---- 181 (814)
T COG1201 167 ----------------------------------GVQLAL-SLE--------------------------RLRELA---- 181 (814)
T ss_pred ----------------------------------chhhhh-hHH--------------------------HHHhhC----
Confidence 111000 000 000100
Q ss_pred ceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHH--HHHH
Q 002898 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE--KEFL 306 (869)
Q Consensus 229 dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~--~Ef~ 306 (869)
| .+| --|+|+|.++.. ..|.
T Consensus 182 ----------------~----------------------------------~~q--------RIGLSATV~~~~~varfL 203 (814)
T COG1201 182 ----------------G----------------------------------DFQ--------RIGLSATVGPPEEVAKFL 203 (814)
T ss_pred ----------------c----------------------------------ccE--------EEeehhccCCHHHHHHHh
Confidence 0 000 126666666422 2333
Q ss_pred HHhC--CCeEEeCCCCCc-ccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCC-CCeEE
Q 002898 307 KMFQ--MPVIEVPTNLPN-IRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG-IPHNV 382 (869)
Q Consensus 307 ~iY~--l~vv~IPt~~p~-~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~g-i~~~v 382 (869)
--++ +.++.++-.++. ++.-.|..-......-|.+++..|.+..++.+.+||||+|...+|.++..|++.+ ++..+
T Consensus 204 ~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~ 283 (814)
T COG1201 204 VGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEV 283 (814)
T ss_pred cCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceee
Confidence 3332 222333333322 2222221111111456677788888888888899999999999999999999987 88888
Q ss_pred eecCCcch-hhHHHHHHHcCCCccEEEEcCCCcCCcce
Q 002898 383 LNARPKYA-AREAETVAQAGRKYAITISTNMAGRGTDI 419 (869)
Q Consensus 383 Lna~~~~~-~~Ea~Iia~AG~~g~VTIATnmAGRGTDI 419 (869)
.|+...-. ..+++---+.|. -.++|||.-.--|+||
T Consensus 284 HHgSlSre~R~~vE~~lk~G~-lravV~TSSLELGIDi 320 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGE-LKAVVATSSLELGIDI 320 (814)
T ss_pred ecccccHHHHHHHHHHHhcCC-ceEEEEccchhhcccc
Confidence 88743222 223344446675 4677999999999999
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.63 E-value=7.3e-14 Score=170.88 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCC---CCeEEeecCCcchhh---HHHHHHH---cCCC--ccEEE
Q 002898 340 EYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQG---IPHNVLNARPKYAAR---EAETVAQ---AGRK--YAITI 408 (869)
Q Consensus 340 ~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~g---i~~~vLna~~~~~~~---Ea~Iia~---AG~~--g~VTI 408 (869)
.++++.+.+..+.|.+|||||+|++.++.+++.|++.+ .++.++|++.....| |.+++.. .|+. +.|.|
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 35666776666789999999999999999999999875 678899997544444 3455553 3432 67999
Q ss_pred EcCCCcCCcceec
Q 002898 409 STNMAGRGTDIIL 421 (869)
Q Consensus 409 ATnmAGRGTDIkL 421 (869)
||+.+.||+||..
T Consensus 627 aTQViE~GLDId~ 639 (878)
T PRK09694 627 ATQVVEQSLDLDF 639 (878)
T ss_pred ECcchhheeecCC
Confidence 9999999999964
No 83
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.63 E-value=2.7e-14 Score=161.91 Aligned_cols=271 Identities=23% Similarity=0.281 Sum_probs=194.6
Q ss_pred chhhHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 4 FDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 4 ~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|||.+++=+ |++|. ++-..|++||||+.-|+-.-++|. |++-..++|=-.||.|-+++|..=|..||++|+.-.|
T Consensus 218 lPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG 297 (830)
T COG1202 218 LPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVG 297 (830)
T ss_pred cchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEec
Confidence 5899998874 77777 889999999999999999989998 7888999999999999999999999999999987665
Q ss_pred CCCHHHHH------hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 80 GMIPEERR------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 80 ~~~~~~rk------~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
-.-...+. -.-.|||++||-. |+|||..- ...+. ....++|||+|.+ -|+-|-|
T Consensus 298 ~srIk~~~~pv~~~t~~dADIIVGTYE--GiD~lLRt------g~~lg---diGtVVIDEiHtL-~deERG~-------- 357 (830)
T COG1202 298 MSRIKTREEPVVVDTSPDADIIVGTYE--GIDYLLRT------GKDLG---DIGTVVIDEIHTL-EDEERGP-------- 357 (830)
T ss_pred hhhhcccCCccccCCCCCCcEEEeech--hHHHHHHc------CCccc---ccceEEeeeeeec-cchhccc--------
Confidence 32222221 1235899999986 58998431 12333 7899999999985 4654443
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
..+-++..| +++|.
T Consensus 358 -------RLdGLI~RL---------------------------------------------------r~l~~-------- 371 (830)
T COG1202 358 -------RLDGLIGRL---------------------------------------------------RYLFP-------- 371 (830)
T ss_pred -------chhhHHHHH---------------------------------------------------HHhCC--------
Confidence 222222211 23321
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
+ ..+.|+|+|.|+ ..|+.+..|...
T Consensus 372 ----------------~--------------------------------------AQ~i~LSATVgN-p~elA~~l~a~l 396 (830)
T COG1202 372 ----------------G--------------------------------------AQFIYLSATVGN-PEELAKKLGAKL 396 (830)
T ss_pred ----------------C--------------------------------------CeEEEEEeecCC-hHHHHHHhCCee
Confidence 0 024477888876 456667777765
Q ss_pred EEeCCCCCc--ccccCCCeEEe-ChhHHHHHHHHHHHHHH----hcC--CcEEEEecchhhHHHHHHHHHHCCCCeEEee
Q 002898 314 IEVPTNLPN--IRVDLPIQSFA-TARGKWEYARQEVESMF----RLG--RPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (869)
Q Consensus 314 v~IPt~~p~--~R~d~~d~i~~-t~~~K~~aii~ei~~~~----~~g--rPVLV~t~Si~~SE~ls~~L~~~gi~~~vLn 384 (869)
|.- -.+|+ -| ..+|. ++.+||+-|.+.+++-. .+| -..+|||.|-..++.|+..|..+|++..--|
T Consensus 397 V~y-~~RPVplEr----Hlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYH 471 (830)
T COG1202 397 VLY-DERPVPLER----HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYH 471 (830)
T ss_pred Eee-cCCCCChhH----eeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccccccc
Confidence 432 22332 23 45665 48899998877776432 223 2489999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 385 ARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 385 a~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
|+..+.+|-.---+.|-+.-++.|.|--.|=|+|+.
T Consensus 472 aGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP 507 (830)
T COG1202 472 AGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP 507 (830)
T ss_pred CCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCc
Confidence 987776554322234445668889999999999996
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=4.6e-14 Score=164.76 Aligned_cols=243 Identities=22% Similarity=0.291 Sum_probs=172.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------C
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------C 92 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~------~ 92 (869)
+.|=.-|+|||+||+++++...-.|.+|-++.||+-||+|-++.+.+++..+||+|+..+|.+....|++... .
T Consensus 287 LlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~ 366 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEI 366 (677)
T ss_pred HhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCC
Confidence 4444479999999999999777789999999999999999999999999999999999999999888876653 6
Q ss_pred CeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHHcccC
Q 002898 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG 172 (869)
Q Consensus 93 DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~ 172 (869)
||++||..-| .|... .. ++.++||||-|++=.-.
T Consensus 367 ~ivVGTHALi-----Qd~V~-------F~---~LgLVIiDEQHRFGV~Q------------------------------- 400 (677)
T COG1200 367 DIVVGTHALI-----QDKVE-------FH---NLGLVIIDEQHRFGVHQ------------------------------- 400 (677)
T ss_pred CEEEEcchhh-----hccee-------ec---ceeEEEEeccccccHHH-------------------------------
Confidence 9999999864 33322 23 78999999999852100
Q ss_pred CCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEECCeEEEEeCCCCccccccc
Q 002898 173 LHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRR 252 (869)
Q Consensus 173 ~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ 252 (869)
+.+|+++ +..
T Consensus 401 ------------------------------------------R~~L~~K-----G~~----------------------- 410 (677)
T COG1200 401 ------------------------------------------RLALREK-----GEQ----------------------- 410 (677)
T ss_pred ------------------------------------------HHHHHHh-----CCC-----------------------
Confidence 0011111 100
Q ss_pred cChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHH-HHHh-CCCeEEe---CCCCCcccccC
Q 002898 253 WSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF-LKMF-QMPVIEV---PTNLPNIRVDL 327 (869)
Q Consensus 253 ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef-~~iY-~l~vv~I---Pt~~p~~R~d~ 327 (869)
|+...-||+|--. +.| ...| .|+|..| |+- |+.-
T Consensus 411 -----------------------------------~Ph~LvMTATPIP--RTLAlt~fgDldvS~IdElP~G----RkpI 449 (677)
T COG1200 411 -----------------------------------NPHVLVMTATPIP--RTLALTAFGDLDVSIIDELPPG----RKPI 449 (677)
T ss_pred -----------------------------------CCcEEEEeCCCch--HHHHHHHhccccchhhccCCCC----CCce
Confidence 2234446666542 222 3444 4555444 554 2222
Q ss_pred CCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHH--------HHHHHHHC--CCCeEEeecCCcchhhHHHHH
Q 002898 328 PIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY--------LSDLLKQQ--GIPHNVLNARPKYAAREAETV 397 (869)
Q Consensus 328 ~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~--------ls~~L~~~--gi~~~vLna~~~~~~~Ea~Ii 397 (869)
...+. ..++...+++.|.+...+||.+-++|+=|++||. +++.|+.. +....++|++++.+++++-+-
T Consensus 450 ~T~~i--~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~ 527 (677)
T COG1200 450 TTVVI--PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVME 527 (677)
T ss_pred EEEEe--ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHH
Confidence 22332 2355556677777767899999999999999873 45566643 456789999998888887777
Q ss_pred HHcCCCccEEEEcCCCcCCccee
Q 002898 398 AQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 398 a~AG~~g~VTIATnmAGRGTDIk 420 (869)
+..-....|.|||..--=|+|+.
T Consensus 528 ~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 528 AFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HHHcCCCcEEEEeeEEEecccCC
Confidence 75444889999999988888873
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=1.5e-13 Score=164.59 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=61.8
Q ss_pred EeChhHHHHHHHHHHHHHH-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEE
Q 002898 332 FATARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIS 409 (869)
Q Consensus 332 ~~t~~~K~~aii~ei~~~~-~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIA 409 (869)
+.....|+.++...+ +.| ..|.++||||.++..++.++..| |. .+|++.+.+.+|+.-+-. +.|..-.++|+
T Consensus 475 ~~~np~K~~~~~~Li-~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 475 YVMNPNKFRACQFLI-RFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhChHHHHHHHHHH-HHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 445667887755544 444 47899999999999999998887 33 468898766677654444 34545578999
Q ss_pred cCCCcCCccee
Q 002898 410 TNMAGRGTDII 420 (869)
Q Consensus 410 TnmAGRGTDIk 420 (869)
|+.+++|+|+.
T Consensus 549 SkVgdeGIDlP 559 (732)
T TIGR00603 549 SKVGDTSIDLP 559 (732)
T ss_pred ecccccccCCC
Confidence 99999999994
No 86
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.57 E-value=7.3e-14 Score=174.53 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHH-hcCCcEEEEecchhhHHHHHHHHHHCCCCe---EEeecCCcchhhHHHHHHHcCCCccEEEEcC
Q 002898 336 RGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPH---NVLNARPKYAAREAETVAQAGRKYAITISTN 411 (869)
Q Consensus 336 ~~K~~aii~ei~~~~-~~grPVLV~t~Si~~SE~ls~~L~~~gi~~---~vLna~~~~~~~Ea~Iia~AG~~g~VTIATn 411 (869)
.++..++++.+...+ .....||||+++.++.+.+++.|.+.++++ -.||++..+.+++. +....| .-.|.||||
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~-Vf~~~g-~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR-VFQSHS-GRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHH-HhcccC-CeeEEEecc
Confidence 345566666555443 334579999999999999999999998864 45888765555543 334445 458999999
Q ss_pred CCcCCccee
Q 002898 412 MAGRGTDII 420 (869)
Q Consensus 412 mAGRGTDIk 420 (869)
+|.||+||.
T Consensus 346 IAEtSITIp 354 (1294)
T PRK11131 346 VAETSLTVP 354 (1294)
T ss_pred HHhhccccC
Confidence 999999995
No 87
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.56 E-value=1.4e-12 Score=152.33 Aligned_cols=263 Identities=20% Similarity=0.257 Sum_probs=178.4
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~ 82 (869)
+-|.-.+-.+++|+ ++-|.||-||||.|-+||++. .| -+.||+|==.|=+.....+ ...|+.++++.+.++
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G-~TLVVSPLiSLM~DQV~~l----~~~Gi~A~~lnS~l~ 92 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG-LTLVVSPLISLMKDQVDQL----EAAGIRAAYLNSTLS 92 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CC-CEEEECchHHHHHHHHHHH----HHcCceeehhhcccC
Confidence 45676777788877 999999999999999999864 45 5567776656655444333 457899999999999
Q ss_pred HHHHHhccC------CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCc
Q 002898 83 PEERRSNYR------CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDV 156 (869)
Q Consensus 83 ~~~rk~aY~------~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~ 156 (869)
.++++..+. .+++|-+|..+.-.+.++.+.. - ++..++|||||++. +=
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~-------~---~i~l~vIDEAHCiS-qW--------------- 146 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKR-------L---PISLVAIDEAHCIS-QW--------------- 146 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHh-------C---CCceEEechHHHHh-hc---------------
Confidence 888876553 4899999999877777766542 2 78899999999984 11
Q ss_pred ccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHH-HHHHHHHhccCcceEEECC
Q 002898 157 ARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN-ALKAKEFYRRDVQYIVRNG 235 (869)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~-Al~A~~l~~~d~dYiV~d~ 235 (869)
+.||..+ +..- .++ .
T Consensus 147 ---------------GhdFRP~----------------------------------Y~~lg~l~--~------------- 162 (590)
T COG0514 147 ---------------GHDFRPD----------------------------------YRRLGRLR--A------------- 162 (590)
T ss_pred ---------------CCccCHh----------------------------------HHHHHHHH--h-------------
Confidence 1122110 1000 010 0
Q ss_pred eEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH-HHHHHHHhCCC--
Q 002898 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP-- 312 (869)
Q Consensus 236 ~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~iY~l~-- 312 (869)
+++ -..+..+|+||... .....+..++.
T Consensus 163 ------------------------------~~~-------------------~~p~~AlTATA~~~v~~DI~~~L~l~~~ 193 (590)
T COG0514 163 ------------------------------GLP-------------------NPPVLALTATATPRVRDDIREQLGLQDA 193 (590)
T ss_pred ------------------------------hCC-------------------CCCEEEEeCCCChHHHHHHHHHhcCCCc
Confidence 000 01245677777653 44555555554
Q ss_pred -eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchh
Q 002898 313 -VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA 391 (869)
Q Consensus 313 -vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~ 391 (869)
++..-.++|+++-..-. ..+...+..-|.+ ..+..++|-+|+|.|...+|.+++.|...|+....-||++...+
T Consensus 194 ~~~~~sfdRpNi~~~v~~--~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~e 268 (590)
T COG0514 194 NIFRGSFDRPNLALKVVE--KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEE 268 (590)
T ss_pred ceEEecCCCchhhhhhhh--cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHH
Confidence 34556678887633211 1123344442222 24567889999999999999999999999999999999876555
Q ss_pred hHHHHHHHcCC--CccEEEEcCCCcCCccee
Q 002898 392 REAETVAQAGR--KYAITISTNMAGRGTDII 420 (869)
Q Consensus 392 ~Ea~Iia~AG~--~g~VTIATnmAGRGTDIk 420 (869)
|| .+.++-. ...|.|||+-.|=|+|-.
T Consensus 269 R~--~~q~~f~~~~~~iiVAT~AFGMGIdKp 297 (590)
T COG0514 269 RE--RVQQAFLNDEIKVMVATNAFGMGIDKP 297 (590)
T ss_pred HH--HHHHHHhcCCCcEEEEeccccCccCCC
Confidence 54 4444433 468999999999999984
No 88
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.55 E-value=7.3e-13 Score=162.35 Aligned_cols=281 Identities=22% Similarity=0.201 Sum_probs=184.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCc--EEEEecCHHHHHHHHHHHHHHhhhcC--CeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEG--VHVVTVNDYLAQRDAEWMERVHRFLG--LSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~--V~VvT~ndyLA~RDae~~~~ly~~LG--Lsv~ 75 (869)
++|.-|.-+.-.+++|+ |+.-.||+|||++|.+|++=..|.+.. ..++.|+..||....+.+..+-.-+| ++++
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 47999999999999997 999999999999999999877777654 49999999999999999999999888 8888
Q ss_pred EEcCCCCHHHHHhccC--CCeEEECCCchhhhHHHHhhcc-chhh-hhccCCCCceEEEeechhhhhhhcCCCceeecCC
Q 002898 76 LIQRGMIPEERRSNYR--CDITYTNNSELGFDYLRDNLAA-NSEQ-LVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (869)
Q Consensus 76 ~i~~~~~~~~rk~aY~--~DI~YgT~~e~~fDyLrD~l~~-~~~~-~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (869)
..+|+.++++|+..|. +||+.+++. .|.-.+.. ...- ...+ .+.|+||||+|.= +.++-.
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpd-----MLh~~llr~~~~~~~~~~---~Lk~lVvDElHtY--rGv~GS------ 213 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPD-----MLHYLLLRNHDAWLWLLR---NLKYLVVDELHTY--RGVQGS------ 213 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHH-----HHHHHhccCcchHHHHHh---cCcEEEEecceec--cccchh------
Confidence 9999999998887765 599966653 33222221 1111 2234 7999999999982 332100
Q ss_pred CCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceE
Q 002898 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (869)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYi 231 (869)
.++-+++.| ...+ ..+..
T Consensus 214 ---------~vA~llRRL---------------------------------------------~~~~---~~~~~----- 231 (851)
T COG1205 214 ---------EVALLLRRL---------------------------------------------LRRL---RRYGS----- 231 (851)
T ss_pred ---------HHHHHHHHH---------------------------------------------HHHH---hccCC-----
Confidence 111111111 0000 00000
Q ss_pred EECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCC
Q 002898 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQM 311 (869)
Q Consensus 232 V~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l 311 (869)
=..+.++|+|+++..+-..+..|.
T Consensus 232 --------------------------------------------------------~~q~i~~SAT~~np~e~~~~l~~~ 255 (851)
T COG1205 232 --------------------------------------------------------PLQIICTSATLANPGEFAEELFGR 255 (851)
T ss_pred --------------------------------------------------------CceEEEEeccccChHHHHHHhcCC
Confidence 013456788888755444667777
Q ss_pred CeEE-eCCCC-Ccc-c---ccCCCeEEeC---hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHH----HHHHHCC-
Q 002898 312 PVIE-VPTNL-PNI-R---VDLPIQSFAT---ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS----DLLKQQG- 377 (869)
Q Consensus 312 ~vv~-IPt~~-p~~-R---~d~~d~i~~t---~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls----~~L~~~g- 377 (869)
++.. |.-.. |.- | ...|...+.. ..+++..+...+......|...|+||.|-..+|.+. +.+...+
T Consensus 256 ~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~ 335 (851)
T COG1205 256 DFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGG 335 (851)
T ss_pred cceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcch
Confidence 7665 43221 111 0 1112111111 125666555556667789999999999999999996 4555555
Q ss_pred ---CCeEEeecCCcchhhHHHHHH---HcCCCccEEEEcCCCcCCcce
Q 002898 378 ---IPHNVLNARPKYAAREAETVA---QAGRKYAITISTNMAGRGTDI 419 (869)
Q Consensus 378 ---i~~~vLna~~~~~~~Ea~Iia---~AG~~g~VTIATnmAGRGTDI 419 (869)
..+.+-.|. .+..|...+. +.| ...+.||||++-=|+||
T Consensus 336 ~l~~~v~~~~~~--~~~~er~~ie~~~~~g-~~~~~~st~Alelgidi 380 (851)
T COG1205 336 KLLDAVSTYRAG--LHREERRRIEAEFKEG-ELLGVIATNALELGIDI 380 (851)
T ss_pred hhhhheeecccc--CCHHHHHHHHHHHhcC-CccEEecchhhhhceee
Confidence 334444553 3445544333 455 45777999999999999
No 89
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.54 E-value=1.9e-11 Score=150.94 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHH-HHCCCCeEEeecCCcchhhHHHHHHHc-CC-CccEEEEcCC
Q 002898 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLL-KQQGIPHNVLNARPKYAAREAETVAQA-GR-KYAITISTNM 412 (869)
Q Consensus 336 ~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L-~~~gi~~~vLna~~~~~~~Ea~Iia~A-G~-~g~VTIATnm 412 (869)
..|...+++.++.. .+.+|||||.+...++.|++.| ...|+++.++|+++.+.+|+..+-..+ +. ...|.|||+.
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 46777777766542 3779999999999999999999 567999999999887878876665544 32 4689999999
Q ss_pred CcCCccee
Q 002898 413 AGRGTDII 420 (869)
Q Consensus 413 AGRGTDIk 420 (869)
+|||.|+.
T Consensus 556 gseGlNlq 563 (956)
T PRK04914 556 GSEGRNFQ 563 (956)
T ss_pred hccCCCcc
Confidence 99999984
No 90
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.54 E-value=2.2e-12 Score=155.58 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=91.5
Q ss_pred CchhhHHHHHHHhCC---C--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 3 HFDVQIIGGAVLHDG---S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 3 p~dvQl~g~~~L~~G---~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
+++.|.-+.-.+.++ + ++.+.||+|||.+++.++.-....|++|.|++|+..||.|-.+.+.. .||.+++.+
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~---~fg~~v~~~ 221 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRA---RFGAPVAVL 221 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCCEEEE
Confidence 567888777777653 2 89999999999999877653233588999999999999998887775 458999999
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 78 ~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.+++++.+|...+ .++|++||.+.+ | .-.+ ++..+||||+|...
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~-------------~p~~---~l~liVvDEeh~~s 271 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSAL-F-------------LPFK---NLGLIIVDEEHDSS 271 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-c-------------cccc---CCCEEEEECCCccc
Confidence 9999988876554 469999999764 1 1123 78999999999754
No 91
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.54 E-value=6.7e-13 Score=150.03 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=108.8
Q ss_pred HHHHHHHhCCCeEEecCCCcHHHHHHHHHH-HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCC---eEEEEcCCCCH
Q 002898 8 IIGGAVLHDGSIAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL---SVGLIQRGMIP 83 (869)
Q Consensus 8 l~g~~~L~~G~IaEm~TGEGKTLva~lpa~-l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGL---sv~~i~~~~~~ 83 (869)
.+++=+|.++.++-|.||=|||.+|+|.+. .....|+.|.++.||.=|..|.++.+. +++|+ .++..+|..+|
T Consensus 22 ~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~---~v~~ip~~~i~~ltGev~p 98 (542)
T COG1111 22 NIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCR---KVTGIPEDEIAALTGEVRP 98 (542)
T ss_pred HHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHH---HHhCCChhheeeecCCCCh
Confidence 466668888889999999999998777664 334455589999999999998777655 55566 45688889999
Q ss_pred HHHHhccC-CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh------------hhhcCCCceeecC
Q 002898 84 EERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV------------LIDEGRNPLLISG 150 (869)
Q Consensus 84 ~~rk~aY~-~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi------------LiDea~tPLiiSg 150 (869)
++|.+.|. +.|.++||--+.-|.+.-.+. .. .+..+|.||||+- .+-.+.+|+|+.=
T Consensus 99 ~~R~~~w~~~kVfvaTPQvveNDl~~Grid-------~~---dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 99 EEREELWAKKKVFVATPQVVENDLKAGRID-------LD---DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred HHHHHHHhhCCEEEeccHHHHhHHhcCccC-------hH---HceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 99999997 599999998876665543222 22 7889999999952 2344788998864
Q ss_pred CCCCCcccHHHHHHHHHHc
Q 002898 151 EASKDVARYPVAAKVAELL 169 (869)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l 169 (869)
..+..++ -..+.++++.|
T Consensus 169 TASPGs~-~ekI~eV~~nL 186 (542)
T COG1111 169 TASPGSD-LEKIQEVVENL 186 (542)
T ss_pred ecCCCCC-HHHHHHHHHhC
Confidence 3333332 34566777766
No 92
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.50 E-value=1e-13 Score=144.86 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=98.1
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---C-CcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---G-EGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---G-~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv 74 (869)
-|-.||--+++----|. +.|.+.|-|||.+|+|+.+ +-|. | -.|.|+|.+++||-+...++..|-+++ +++|
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~tl-qqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhhh-hhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 37789999999555555 9999999999999999885 5553 4 267899999999999999999999988 8999
Q ss_pred EEEcCCCCHHHHHhc--cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 75 GLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 75 ~~i~~~~~~~~rk~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++..||++...-.+. --.+|++||||++ ....|.. .+.+. .....|+||+|.||
T Consensus 143 aVFfGG~~Ikkdee~lk~~PhivVgTPGri-lALvr~k------~l~lk---~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 143 SVFFGGLFIKKDEELLKNCPHIVVGTPGRI-LALVRNR------SLNLK---NVKHFVLDECDKML 198 (387)
T ss_pred EEEEcceeccccHHHHhCCCeEEEcCcHHH-HHHHHhc------cCchh---hcceeehhhHHHHH
Confidence 999999874322222 2349999999996 2222321 23344 77889999999998
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=9.5e-12 Score=145.40 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=76.5
Q ss_pred EecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCC
Q 002898 21 EMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCD 93 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~D 93 (869)
...||+|||+++.-.+. .++ .|++|.|++|...|+.+-++.+.. .||.++.+..+++++.+|...+ .++
T Consensus 3 ~g~TGsGKT~v~l~~i~-~~l~~g~~vLvlvP~i~L~~Q~~~~l~~---~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 3 FGVTGSGKTEVYLQAIE-KVLALGKSVLVLVPEIALTPQMIQRFKY---RFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred cCCCCCCHHHHHHHHHH-HHHHcCCeEEEEeCcHHHHHHHHHHHHH---HhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 34699999999865543 445 588999999999999998877765 4588999999999888876554 369
Q ss_pred eEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh
Q 002898 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (869)
Q Consensus 94 I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (869)
|++||.+.+ | + -.. ++..+||||+|.....
T Consensus 79 IVVGTrsal-f--~-----------p~~---~l~lIIVDEeh~~syk 108 (505)
T TIGR00595 79 VVIGTRSAL-F--L-----------PFK---NLGLIIVDEEHDSSYK 108 (505)
T ss_pred EEECChHHH-c--C-----------ccc---CCCEEEEECCCccccc
Confidence 999998764 1 1 133 7899999999976533
No 94
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.46 E-value=2.6e-12 Score=161.24 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEecchhhHHHHHHHHHHCCCC---eEEeecCCcchhhHHHHHHHcCCCccEEEEcCC
Q 002898 337 GKWEYARQEVESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP---HNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (869)
Q Consensus 337 ~K~~aii~ei~~~~~-~grPVLV~t~Si~~SE~ls~~L~~~gi~---~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnm 412 (869)
++..+++..+.+.+. ....||||+++..+.+.+++.|.+.+.+ +-.||+...+.+++. +.. .+....|.||||+
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~-vf~-~~~~rkIVLATNI 339 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQR-VFQ-PHSGRRIVLATNV 339 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHH-HhC-CCCCceEEEeccH
Confidence 345566665554433 3457999999999999999999987654 556888755544443 333 3323589999999
Q ss_pred CcCCccee
Q 002898 413 AGRGTDII 420 (869)
Q Consensus 413 AGRGTDIk 420 (869)
|.||+||.
T Consensus 340 AEtSLTIp 347 (1283)
T TIGR01967 340 AETSLTVP 347 (1283)
T ss_pred HHhccccC
Confidence 99999994
No 95
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.41 E-value=7.3e-12 Score=151.93 Aligned_cols=113 Identities=25% Similarity=0.326 Sum_probs=90.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITY 96 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~--G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~Y 96 (869)
|+.+.||+|||++|.|+++ +.+. |.+|.-|+|...||..-++++. =++.+|++|+..+++++... .....+||++
T Consensus 51 li~aPTgsGKTlIA~lai~-~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~-~~l~~~~ViV 127 (766)
T COG1204 51 LISAPTGSGKTLIALLAIL-STLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDD-ERLARYDVIV 127 (766)
T ss_pred EEEcCCCCchHHHHHHHHH-HHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccch-hhhccCCEEE
Confidence 9999999999999999997 6655 4789999999999999999999 88999999999999986432 3467889999
Q ss_pred ECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCc
Q 002898 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (869)
Q Consensus 97 gT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tP 145 (869)
+|+.- ||-|..+-. .... ..+.+||||+|-+- |+-|-|
T Consensus 128 tT~EK--~Dsl~R~~~-----~~~~---~V~lvViDEiH~l~-d~~RG~ 165 (766)
T COG1204 128 TTPEK--LDSLTRKRP-----SWIE---EVDLVVIDEIHLLG-DRTRGP 165 (766)
T ss_pred EchHH--hhHhhhcCc-----chhh---cccEEEEeeeeecC-CcccCc
Confidence 99987 454433221 1334 78999999999863 554544
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.35 E-value=3.1e-11 Score=139.02 Aligned_cols=119 Identities=22% Similarity=0.329 Sum_probs=81.1
Q ss_pred CCCchhhHHHHHHHh---CCC-eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe--E
Q 002898 1 MRHFDVQIIGGAVLH---DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS--V 74 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~---~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs--v 74 (869)
+|||-.|.+-.+.-+ .++ ++.+.||.|||++++-.+. ..+..|.||+||..|..| |...++.+++.. +
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~---~~~~~~Lvlv~~~~L~~Q---w~~~~~~~~~~~~~~ 110 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA---ELKRSTLVLVPTKELLDQ---WAEALKKFLLLNDEI 110 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH---HhcCCEEEEECcHHHHHH---HHHHHHHhcCCcccc
Confidence 355666666666554 444 9999999999999888775 334459999999999996 557788888885 5
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh
Q 002898 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (869)
Q Consensus 75 ~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (869)
|.+.++.. .... .+|+|+|-..+... .++. ....+ .+..+|+||||.+-.+
T Consensus 111 g~~~~~~~----~~~~-~~i~vat~qtl~~~---~~l~----~~~~~---~~~liI~DE~Hh~~a~ 161 (442)
T COG1061 111 GIYGGGEK----ELEP-AKVTVATVQTLARR---QLLD----EFLGN---EFGLIIFDEVHHLPAP 161 (442)
T ss_pred ceecCcee----ccCC-CcEEEEEhHHHhhh---hhhh----hhccc---ccCEEEEEccccCCcH
Confidence 55544321 1111 67999998776321 1111 12223 7999999999997533
No 97
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.32 E-value=1.4e-11 Score=125.78 Aligned_cols=127 Identities=21% Similarity=0.257 Sum_probs=103.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.|++.|..+...+++|+ ++.+.||.|||+++++|+.-.... |..|.|++|+..|+.+-++.+..+....++.+
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceE
Confidence 48999999999999887 999999999999999998643333 33689999999999999999999988889999
Q ss_pred EEEcCCCCHHHHHhcc--CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 75 GLIQRGMIPEERRSNY--RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 75 ~~i~~~~~~~~rk~aY--~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.+..++.+...+...| +++|+++|+..+ .+++..+ . ...+ .+.++||||+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~----~--~~~~---~l~~lIvDE~h~~~ 156 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRL-LDLLERG----K--LDLS---KVKYLVLDEADRML 156 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHH-HHHHHcC----C--CChh---hCCEEEEeChHHhh
Confidence 9999988866666666 789999999876 4444322 1 2234 78999999999985
No 98
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.29 E-value=3.9e-10 Score=139.54 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=83.5
Q ss_pred ehhHhhhcCcccccCCCcccH--HHHHHHHhCCC---eEEe-CCCCCc---ccc----cCCCeEEeChhHHHHHHHHHHH
Q 002898 281 YQSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP---VIEV-PTNLPN---IRV----DLPIQSFATARGKWEYARQEVE 347 (869)
Q Consensus 281 ~q~~Fr~Y~kL~GmTGTa~te--~~Ef~~iY~l~---vv~I-Pt~~p~---~R~----d~~d~i~~t~~~K~~aii~ei~ 347 (869)
.+.+|..+.....+|||+... .+-|.+..|++ +..+ |+-.+- .+. |.|..-..+.++-..++++.|.
T Consensus 588 ~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~ 667 (850)
T TIGR01407 588 TKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYII 667 (850)
T ss_pred HHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHH
Confidence 355667777888888888742 34456677774 1223 443331 111 1221112234445557777776
Q ss_pred HHHh-cCCcEEEEecchhhHHHHHHHHHHC----CCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 348 SMFR-LGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 348 ~~~~-~grPVLV~t~Si~~SE~ls~~L~~~----gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+... .+.++||+|+|.+..+.++..|... +++ ++.-. .+..++.-+-. +.| .+.|.++|+.+.+|+|+.
T Consensus 668 ~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~-~~~~r~~ll~~F~~~-~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 668 EITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQG-INGSRAKIKKRFNNG-EKAILLGTSSFWEGVDFP 742 (850)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecC-CCccHHHHHHHHHhC-CCeEEEEcceeecccccC
Confidence 6543 4457999999999999999999762 333 34332 12244432222 345 678999999999999998
No 99
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.29 E-value=4e-11 Score=117.97 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=99.5
Q ss_pred chhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~--~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
+|.|.-+...+.+|+ ++.+.||.|||+++.+|++-....++ .+.+++|+.+|+.+-++++..++...++++..+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 478988888888777 99999999999999999974445555 89999999999999999999999999999999998
Q ss_pred CCCHH-HH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhh
Q 002898 80 GMIPE-ER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 80 ~~~~~-~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
+.+.. .. .....++|+++|+..| ++.++. . ..... .+.++|+||+|.+.-
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~----~--~~~~~---~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQL-LDLISN----G--KINIS---RLSLIVIDEAHHLSD 133 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHH-HHHHHT----T--SSTGT---TESEEEEETHHHHHH
T ss_pred cccccccccccccccccccccCcchh-hccccc----c--ccccc---cceeeccCccccccc
Confidence 87743 22 2334699999999875 333332 1 11223 589999999999864
No 100
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.24 E-value=3.8e-10 Score=135.75 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=95.8
Q ss_pred hhHHHHHHHh---CCCeEEecCCCcHHHHHHHHHHHHHHc-----------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 6 VQIIGGAVLH---DGSIAEMKTGEGKTLVSTLAAYLNALT-----------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 6 vQl~g~~~L~---~G~IaEm~TGEGKTLva~lpa~l~AL~-----------G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
+|-++-+... .+.|+...||.|||-+|.|+++ +.+. +-++-=|.|...||.--.+.+.+=+..||
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~IL-r~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g 192 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCIL-RTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG 192 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHH-HHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc
Confidence 5666666554 3449999999999999999985 8876 23677789999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhc
Q 002898 72 LSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (869)
Q Consensus 72 Lsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (869)
++|.-.+|++.- -+-+.-.|||++.||.- ||.+-..-..+ ...+. ....+||||||-+ -|+
T Consensus 193 i~v~ELTGD~ql-~~tei~~tqiiVTTPEK--wDvvTRk~~~d--~~l~~---~V~LviIDEVHlL-hd~ 253 (1230)
T KOG0952|consen 193 ISVRELTGDTQL-TKTEIADTQIIVTTPEK--WDVVTRKSVGD--SALFS---LVRLVIIDEVHLL-HDD 253 (1230)
T ss_pred ceEEEecCcchh-hHHHHHhcCEEEecccc--eeeeeeeeccc--hhhhh---heeeEEeeeehhh-cCc
Confidence 999999998753 23347789999999987 56553222211 12334 6789999999963 454
No 101
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.20 E-value=1.7e-10 Score=108.19 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=68.2
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH--HcCCCccEEEE
Q 002898 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITIS 409 (869)
Q Consensus 332 ~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia--~AG~~g~VTIA 409 (869)
+.+.+.|...+.+.+....+.+.++||||++...++.+.+.|++.++++..+++.....++. .++. +.| ...|+|+
T Consensus 7 ~~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~-~~~ili~ 84 (131)
T cd00079 7 LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEERE-EVLKDFREG-EIVVLVA 84 (131)
T ss_pred EECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHH-HHHHHHHcC-CCcEEEE
Confidence 34444788888888887666789999999999999999999999999999999975433333 3332 223 2469999
Q ss_pred cCCCcCCccee
Q 002898 410 TNMAGRGTDII 420 (869)
Q Consensus 410 TnmAGRGTDIk 420 (869)
|+++|+|+|+.
T Consensus 85 t~~~~~G~d~~ 95 (131)
T cd00079 85 TDVIARGIDLP 95 (131)
T ss_pred cChhhcCcChh
Confidence 99999999983
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.18 E-value=9.2e-09 Score=129.76 Aligned_cols=130 Identities=14% Similarity=0.040 Sum_probs=75.4
Q ss_pred CchhhHHHHHHH----hCC---CeEEecCCCcHHHHHHHHHHHH--HHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 3 HFDVQIIGGAVL----HDG---SIAEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 3 p~dvQl~g~~~L----~~G---~IaEm~TGEGKTLva~lpa~l~--AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
+.|-|.-++-.+ .+| -++.|.||+|||++++..++.. +-..+.|.++++...|..|-.+.|..+.-.-+.+
T Consensus 414 lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~ 493 (1123)
T PRK11448 414 LRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQT 493 (1123)
T ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccc
Confidence 455666666443 233 3999999999999866555422 1123689999999999999998888763222222
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
++.+.+...-......-...|+++|.-.|.-..+... ......... .++++||||||+.
T Consensus 494 ~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~--~~~~~~~~~---~fdlIIiDEaHRs 552 (1123)
T PRK11448 494 FASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSD--DPMDKPPVD---QYDCIIVDEAHRG 552 (1123)
T ss_pred hhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccc--cccccCCCC---cccEEEEECCCCC
Confidence 2212211111112223356899999876532111100 000001122 7899999999974
No 103
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.11 E-value=2.6e-09 Score=131.54 Aligned_cols=270 Identities=19% Similarity=0.216 Sum_probs=176.3
Q ss_pred chhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002898 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~ 81 (869)
.+.|.-++.+.+.|+ .+.|.||-||+|.+-+||+ |.+.-..||.|=..|=+.... .+ ...||....+.+++
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~---l~~gitvVISPL~SLm~DQv~---~L-~~~~I~a~~L~s~q 338 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL---LLGGVTVVISPLISLMQDQVT---HL-SKKGIPACFLSSIQ 338 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc---ccCCceEEeccHHHHHHHHHH---hh-hhcCcceeeccccc
Confidence 467888888999998 9999999999999999998 566667788887777764333 33 56789999999999
Q ss_pred CHHHHHhccC--------CCeEEECCCchh-hhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 82 IPEERRSNYR--------CDITYTNNSELG-FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 82 ~~~~rk~aY~--------~DI~YgT~~e~~-fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
+..+|...|+ .+|+|.||.-+. -.-|...+. .+..| ..+..++|||||.+.
T Consensus 339 ~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~----~L~~~--~~lal~vIDEAHCVS-------------- 398 (941)
T KOG0351|consen 339 TAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA----DLYAR--GLLALFVIDEAHCVS-------------- 398 (941)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH----hccCC--CeeEEEEecHHHHhh--------------
Confidence 9888877774 489999986542 011111111 11111 137889999999984
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
+. +.|| .+. ++++.. ++.+ |-
T Consensus 399 ---------------qW--gHdF-----------------------------Rp~---Yk~l~~-l~~~--~~------- 419 (941)
T KOG0351|consen 399 ---------------QW--GHDF-----------------------------RPS---YKRLGL-LRIR--FP------- 419 (941)
T ss_pred ---------------hh--cccc-----------------------------cHH---HHHHHH-HHhh--CC-------
Confidence 00 1122 111 122221 1000 00
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH-HHHHHHHhCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQM 311 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~iY~l 311 (869)
+ --+.++|+||.+. .+...+--|+
T Consensus 420 ---------------------------------~----------------------vP~iALTATAT~~v~~DIi~~L~l 444 (941)
T KOG0351|consen 420 ---------------------------------G----------------------VPFIALTATATERVREDVIRSLGL 444 (941)
T ss_pred ---------------------------------C----------------------CCeEEeehhccHHHHHHHHHHhCC
Confidence 0 1256889999653 3345544444
Q ss_pred C---eEEeCCCCCcccccCCCeEEeCh-hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCC
Q 002898 312 P---VIEVPTNLPNIRVDLPIQSFATA-RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP 387 (869)
Q Consensus 312 ~---vv~IPt~~p~~R~d~~d~i~~t~-~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~ 387 (869)
. +..--.|+|..+ ..|-... ......+...++.. ..+++.+|.|.+..++|.++..|...|+.+...||++
T Consensus 445 ~~~~~~~~sfnR~NL~----yeV~~k~~~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl 519 (941)
T KOG0351|consen 445 RNPELFKSSFNRPNLK----YEVSPKTDKDALLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGL 519 (941)
T ss_pred CCcceecccCCCCCce----EEEEeccCccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCC
Confidence 4 333344455433 3333333 34444566666654 5689999999999999999999999999999999986
Q ss_pred cchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 388 KYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 388 ~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.-.+|+.--.+ ..+ .-+|.+||=+.|=|+|-+
T Consensus 520 ~~~~R~~Vq~~w~~~-~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 520 PPKERETVQKAWMSD-KIRVIVATVAFGMGIDKP 552 (941)
T ss_pred CHHHHHHHHHHHhcC-CCeEEEEEeeccCCCCCC
Confidence 44445432222 344 358999999999999974
No 104
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.10 E-value=2.1e-09 Score=119.33 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=84.0
Q ss_pred chhhHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 4 FDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
.|.|-.+..+..+|+ -+.|.||.||||.+-||++ +.|.=..|+.|==.|-+.... -...|.+.|....+.
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL---~~~gITIV~SPLiALIkDQiD----HL~~LKVp~~SLNSK 94 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPAL---VHGGITIVISPLIALIKDQID----HLKRLKVPCESLNSK 94 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHH---HhCCeEEEehHHHHHHHHHHH----HHHhcCCchhHhcch
Confidence 478999999998888 7999999999999999997 344322344443333332222 234566777778888
Q ss_pred CCHHHHHhcc--------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 81 MIPEERRSNY--------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 81 ~~~~~rk~aY--------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|+.++|...- +-.|.|-||..-.-|...+.+.. ++.|+ .+.|++|||||.+
T Consensus 95 lSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~--~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 95 LSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRD--VLRYIVVDEAHCV 153 (641)
T ss_pred hhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----Hhhhc--eeeeEEechhhhH
Confidence 9888886533 24799999987766655555432 23321 6789999999997
No 105
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.05 E-value=2.3e-08 Score=123.29 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=84.8
Q ss_pred hhHhhhcCcccccCCCccc--HHHHHHHHhCCCe---EEeCCCCCcccc-----cCCCeEEeChhHHHHHHHHHHHHHHh
Q 002898 282 QSLFKLYPKLSGMTGTAKT--EEKEFLKMFQMPV---IEVPTNLPNIRV-----DLPIQSFATARGKWEYARQEVESMFR 351 (869)
Q Consensus 282 q~~Fr~Y~kL~GmTGTa~t--e~~Ef~~iY~l~v---v~IPt~~p~~R~-----d~~d~i~~t~~~K~~aii~ei~~~~~ 351 (869)
+.+|.....+..+|||+.. .-. |.+..|++. ..+|.+.+..+. +.|+.--.+.++...++++.|.....
T Consensus 567 ~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~ 645 (820)
T PRK07246 567 SQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQ 645 (820)
T ss_pred HHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 6777777788888898852 222 777778752 223322221111 22221112334555677777766666
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH--HcCCCccEEEEcCCCcCCcceecC
Q 002898 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDIILG 422 (869)
Q Consensus 352 ~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia--~AG~~g~VTIATnmAGRGTDIkLg 422 (869)
.+.++||+++|-+.-+.+++.|....+++ +.-+. ...++ .+++ +.+ .++|.++|.-.--|+|+.=|
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~--~~~~~-~l~~~F~~~-~~~vLlG~~sFwEGVD~p~~ 713 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEK--NGTAY-NIKKRFDRG-EQQILLGLGSFWEGVDFVQA 713 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCC--CccHH-HHHHHHHcC-CCeEEEecchhhCCCCCCCC
Confidence 77899999999999999999997665554 22221 11222 3444 333 56899999999999999633
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.05 E-value=4.1e-08 Score=122.37 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH-cCCC--ccEEEEc
Q 002898 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ-AGRK--YAITIST 410 (869)
Q Consensus 334 t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~-AG~~--g~VTIAT 410 (869)
....|...+...+......|..|||||......+.|.+.|...|+++..+++.....+|++.|-.. +... ..+.++|
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 345677766666666677899999999999999999999999999999999987666777655553 3222 2568999
Q ss_pred CCCcCCccee
Q 002898 411 NMAGRGTDII 420 (869)
Q Consensus 411 nmAGRGTDIk 420 (869)
..+|-|++..
T Consensus 548 rAGGlGINLt 557 (1033)
T PLN03142 548 RAGGLGINLA 557 (1033)
T ss_pred cccccCCchh
Confidence 9999999863
No 107
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.02 E-value=1.9e-08 Score=121.24 Aligned_cols=85 Identities=24% Similarity=0.318 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCC
Q 002898 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (869)
Q Consensus 335 ~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmA 413 (869)
...++..+++++.+..+.|..|||||.|...++.|++.|...|+++.++|+.+.+.+|+..+.. +.| .-.|+|||+++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L 506 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLL 506 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEEEeCHH
Confidence 3456778999999888899999999999999999999999999999999997555555544433 445 45788999999
Q ss_pred cCCccee
Q 002898 414 GRGTDII 420 (869)
Q Consensus 414 GRGTDIk 420 (869)
+||.|+.
T Consensus 507 ~rGfdlp 513 (652)
T PRK05298 507 REGLDIP 513 (652)
T ss_pred hCCcccc
Confidence 9999994
No 108
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.94 E-value=8.4e-09 Score=95.73 Aligned_cols=111 Identities=24% Similarity=0.280 Sum_probs=84.9
Q ss_pred CCeEEecCCCcHHHHHHHHHHHHHH--cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH--HHhccCC
Q 002898 17 GSIAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE--RRSNYRC 92 (869)
Q Consensus 17 G~IaEm~TGEGKTLva~lpa~l~AL--~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~--rk~aY~~ 92 (869)
+-++.+.||.|||.++..++..... .++.+.|++||..|+.+-.+.+...+.. ++.+..+.+...... ......+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 4588999999999998888874444 4579999999999999999988888776 788888777655333 3346778
Q ss_pred CeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 93 DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+|+++|+..+...+.... ...+ .++++||||+|.+.
T Consensus 81 ~i~i~t~~~~~~~~~~~~-------~~~~---~~~~iiiDE~h~~~ 116 (144)
T cd00046 81 DIVVGTPGRLLDELERLK-------LSLK---KLDLLILDEAHRLL 116 (144)
T ss_pred CEEEECcHHHHHHHHcCC-------cchh---cCCEEEEeCHHHHh
Confidence 999999987643222211 2234 78999999999985
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.89 E-value=8.1e-08 Score=117.38 Aligned_cols=132 Identities=20% Similarity=0.096 Sum_probs=84.9
Q ss_pred ccccCCCcccHH-HHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHH----HHHHHHHHHHHhcCCcEEEEecchhh
Q 002898 291 LSGMTGTAKTEE-KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKW----EYARQEVESMFRLGRPVLVGSTSVEN 365 (869)
Q Consensus 291 L~GmTGTa~te~-~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~----~aii~ei~~~~~~grPVLV~t~Si~~ 365 (869)
+.-||+|..+.- +.|.+.++-...+.++...+.-.+.+........... ......+....+.|.+|||+|+||..
T Consensus 373 ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~ 452 (733)
T COG1203 373 VLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDR 452 (733)
T ss_pred EEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHH
Confidence 456888888754 4556666666555544332221222211111101100 12345555566889999999999999
Q ss_pred HHHHHHHHHHCCCCeEEeecCCcchhhH---HHHHHH-cCCCccEEEEcCCCcCCcceecC
Q 002898 366 SEYLSDLLKQQGIPHNVLNARPKYAARE---AETVAQ-AGRKYAITISTNMAGRGTDIILG 422 (869)
Q Consensus 366 SE~ls~~L~~~gi~~~vLna~~~~~~~E---a~Iia~-AG~~g~VTIATnmAGRGTDIkLg 422 (869)
|..+...|+..+-+.-+||++.....|+ .++.+. +...+-|.|||...-=|+||..+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd 513 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFD 513 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccC
Confidence 9999999999988788999974433333 333332 55578999999999999999653
No 110
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.83 E-value=3.7e-08 Score=97.12 Aligned_cols=127 Identities=29% Similarity=0.253 Sum_probs=89.2
Q ss_pred CCchhhHHHHHHHhCC---CeEEecCCCcHHHHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 2 RHFDVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G---~IaEm~TGEGKTLva~lpa~l~AL~G--~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.|++.|.-+.-.++++ .+..+.||+|||.+++.+++-....+ +.+.+++|+..++.+-...+..++.........
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEE
Confidence 5788899888887764 39999999999999999987555554 789999999999998777777776655533344
Q ss_pred EcCCCC-HHHHH-hccCC-CeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 77 IQRGMI-PEERR-SNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 77 i~~~~~-~~~rk-~aY~~-DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.++.. ..... ..-.+ +|+++|++.+ .+.+.... .... ++.++||||+|.+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~t~~~l-----~~~~~~~~--~~~~---~~~~iIiDE~h~~~ 142 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRL-----LDLLENDL--LELS---NVDLVILDEAHRLL 142 (201)
T ss_pred EeCCcchHHHHHHHhcCCCCEEEeChHHH-----HHHHHcCC--cCHh---HCCEEEEECHHHHh
Confidence 444433 22222 22334 9999998765 33322211 2233 78899999999974
No 111
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.81 E-value=3.8e-07 Score=99.92 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-CC-CeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCc
Q 002898 341 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GI-PHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGT 417 (869)
Q Consensus 341 aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~-gi-~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGT 417 (869)
++...+...+++|+|||||+++|+..|.+++.|+.. .- .....|+. .++..|. +-+ +-| .-.|+|+|-+.-||+
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~-d~~R~Ek-V~~fR~G-~~~lLiTTTILERGV 369 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE-DQHRKEK-VEAFRDG-KITLLITTTILERGV 369 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-CccHHHH-HHHHHcC-ceEEEEEeehhhccc
Confidence 577788888899999999999999999999999553 22 22344553 3555563 333 555 557899999999998
Q ss_pred cee
Q 002898 418 DII 420 (869)
Q Consensus 418 DIk 420 (869)
-+.
T Consensus 370 Tfp 372 (441)
T COG4098 370 TFP 372 (441)
T ss_pred ccc
Confidence 774
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.80 E-value=1.1e-06 Score=106.68 Aligned_cols=125 Identities=25% Similarity=0.351 Sum_probs=98.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEE-
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLI- 77 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LG-Lsv~~i- 77 (869)
+|+..|-+=+-.+..|+ -+-+.||-|||.--++.++..|..|+.|.+|.||.-|++|-++.+..|-+.-| +.+-.+
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~y 161 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVY 161 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 68889999999999999 55678999999765555555899999999999999999999999999987766 655554
Q ss_pred cCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 78 QRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 78 ~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.+.++.++|+++- +.||..+|+. ||..|+. .+..- +|+|++||.||++|
T Consensus 162 h~~l~~~ekee~le~i~~gdfdIlitTs~-----FL~k~~e----~L~~~---kFdfifVDDVDA~L 216 (1187)
T COG1110 162 HSALPTKEKEEALERIESGDFDILITTSQ-----FLSKRFE----ELSKL---KFDFIFVDDVDAIL 216 (1187)
T ss_pred ccccchHHHHHHHHHHhcCCccEEEEeHH-----HHHhhHH----Hhccc---CCCEEEEccHHHHH
Confidence 4456777776543 3699999985 4666553 23333 79999999999998
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.78 E-value=1.1e-07 Score=114.73 Aligned_cols=181 Identities=17% Similarity=0.231 Sum_probs=113.8
Q ss_pred ceEEECCeEEEEeCCCCccccccccChhhhHHHHh--hhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHH
Q 002898 229 QYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEA--KEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL 306 (869)
Q Consensus 229 dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaiea--KEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~ 306 (869)
||+ .++-+++||+..--...-+.+-.|.+...+. ..|..+.+. ...-..++..|.+.-....-+|.|-+... ..
T Consensus 324 DY~-p~d~lv~iDE~~~~~~q~~~m~~~~~~~~~~lve~g~~lp~~-~~n~~l~~~e~~~~~~q~I~lSaTp~~~e--~~ 399 (655)
T TIGR00631 324 DYF-PDDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEYGFRLPSA-LDNRPLKFEEFEERINQVVYVSATPGPYE--LE 399 (655)
T ss_pred HhC-CCccEEEEecHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCc-ccccCcCHHHHHHhcCCEEEEECCCCcch--hh
Confidence 455 3567888998655444444444444432221 124443311 00123467777666666666776664422 11
Q ss_pred HHhCCCe-EEe-CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEee
Q 002898 307 KMFQMPV-IEV-PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLN 384 (869)
Q Consensus 307 ~iY~l~v-v~I-Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLn 384 (869)
..-++ + ..+ ||..+. |..-......++..+++++....++|.+|||||.|.+.++.|++.|.+.|+++..+|
T Consensus 400 ~~~~i-v~~i~rp~gl~~-----p~~~v~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh 473 (655)
T TIGR00631 400 QSGNV-VEQIIRPTGLLD-----PEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLH 473 (655)
T ss_pred hccCe-eeeeccccCCCC-----CcEEEeeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeee
Confidence 11111 1 122 332211 111223445677889999998888999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 385 a~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+.+.+.+|+..+.. +.| .-.|+||||+++||.|+.
T Consensus 474 ~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 474 SEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLP 509 (655)
T ss_pred CCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeeeC
Confidence 97656666644444 455 457889999999999994
No 114
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.75 E-value=4e-07 Score=100.10 Aligned_cols=270 Identities=18% Similarity=0.225 Sum_probs=161.5
Q ss_pred chhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002898 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~ 81 (869)
.|.|+-++-+...|. +.-|.||-||+|.+-|||++ ...-..||+|==.|-+...- ....||++......+.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---adg~alvi~plislmedqil----~lkqlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---ADGFALVICPLISLMEDQIL----QLKQLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---cCCceEeechhHHHHHHHHH----HHHHhCcchhhccCcc
Confidence 478998888888777 88999999999999999973 33457899998777765433 3567899988777766
Q ss_pred CHHHHHhcc--------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 82 IPEERRSNY--------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 82 ~~~~rk~aY--------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+.++-+..- .-..+|.||..+. ...+..+.-+.... -|-|...-|||||..-
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekia----ksk~~mnkleka~~-~~~~~~iaidevhccs--------------- 228 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIA----KSKKFMNKLEKALE-AGFFKLIAIDEVHCCS--------------- 228 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHH----HHHHHHHHHHHHhh-cceeEEEeecceeehh---------------
Confidence 655443221 1258899997653 22222221122121 1267788899999852
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+ -+.||..|- . .+ ..| +.-|+
T Consensus 229 --------------q--wghdfr~dy-------------------------~-------~l-~il--krqf~-------- 249 (695)
T KOG0353|consen 229 --------------Q--WGHDFRPDY-------------------------K-------AL-GIL--KRQFK-------- 249 (695)
T ss_pred --------------h--hCcccCcch-------------------------H-------HH-HHH--HHhCC--------
Confidence 0 122332220 0 00 001 01111
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCccc-HHHHHHHHhCCC
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT-EEKEFLKMFQMP 312 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~t-e~~Ef~~iY~l~ 312 (869)
|+ .|.|+|+||.+ .-.....+.++.
T Consensus 250 --------------------------------~~----------------------~iigltatatn~vl~d~k~il~ie 275 (695)
T KOG0353|consen 250 --------------------------------GA----------------------PIIGLTATATNHVLDDAKDILCIE 275 (695)
T ss_pred --------------------------------CC----------------------ceeeeehhhhcchhhHHHHHHhHH
Confidence 11 25677777765 223333343333
Q ss_pred ---eEEeCCCCCcccccCCCeEE---eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 313 ---VIEVPTNLPNIRVDLPIQSF---ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 313 ---vv~IPt~~p~~R~d~~d~i~---~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
++.-.-|+|... ..|- .++++-.+.|+..|+... .||.-+|.|-|..++|.++..|+.+||.....||.
T Consensus 276 ~~~tf~a~fnr~nl~----yev~qkp~n~dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~ 350 (695)
T KOG0353|consen 276 AAFTFRAGFNRPNLK----YEVRQKPGNEDDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHAN 350 (695)
T ss_pred hhheeecccCCCCce----eEeeeCCCChHHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccc
Confidence 222233344321 1111 244455556666665443 58999999999999999999999999988777875
Q ss_pred CcchhhH-HHHHHHcCCCccEEEEcCCCcCCcce
Q 002898 387 PKYAARE-AETVAQAGRKYAITISTNMAGRGTDI 419 (869)
Q Consensus 387 ~~~~~~E-a~Iia~AG~~g~VTIATnmAGRGTDI 419 (869)
++-..+- ++--=-|| .-+|+|||--.|-|+|=
T Consensus 351 lep~dks~~hq~w~a~-eiqvivatvafgmgidk 383 (695)
T KOG0353|consen 351 LEPEDKSGAHQGWIAG-EIQVIVATVAFGMGIDK 383 (695)
T ss_pred cCcccccccccccccc-ceEEEEEEeeecccCCC
Confidence 3222111 11111234 44899999999999985
No 115
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.73 E-value=1.3e-06 Score=109.38 Aligned_cols=137 Identities=16% Similarity=0.078 Sum_probs=85.3
Q ss_pred hhHhhhcCcccccCCCcccH--HHHHHHHhCCC-----eEEeCCCCCcc---c----ccCCCeEEeChhHHHHHHHHHHH
Q 002898 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP-----VIEVPTNLPNI---R----VDLPIQSFATARGKWEYARQEVE 347 (869)
Q Consensus 282 q~~Fr~Y~kL~GmTGTa~te--~~Ef~~iY~l~-----vv~IPt~~p~~---R----~d~~d~i~~t~~~K~~aii~ei~ 347 (869)
..+|........+|||+... -.-|.+..|++ ...+|+-.+.. + .|.|+.-..+.++....+++.|.
T Consensus 666 ~~l~~~~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~ 745 (928)
T PRK08074 666 DEFFAKKKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIA 745 (928)
T ss_pred HHHHhcCCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHH
Confidence 34556667888999999753 23345677774 35677754431 1 12222112233455567777777
Q ss_pred HHH-hcCCcEEEEecchhhHHHHHHHHHHCCCC--eEEeecCCcchhhHHHHHH--HcCCCccEEEEcCCCcCCccee
Q 002898 348 SMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIP--HNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 348 ~~~-~~grPVLV~t~Si~~SE~ls~~L~~~gi~--~~vLna~~~~~~~Ea~Iia--~AG~~g~VTIATnmAGRGTDIk 420 (869)
+.. ..+.++||+++|-+.-+.+++.|+..... ..++.-+.....++ .++. +.+ .+.|.++|.-..-|+|+.
T Consensus 746 ~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~-~l~~~F~~~-~~~iLlG~~sFwEGVD~p 821 (928)
T PRK08074 746 KIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRA-RLTKQFQQF-DKAILLGTSSFWEGIDIP 821 (928)
T ss_pred HHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHH-HHHHHHHhc-CCeEEEecCcccCccccC
Confidence 654 35569999999999999999999765321 22333111112333 2333 333 578999999999999986
No 116
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.70 E-value=1.2e-06 Score=104.87 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=52.5
Q ss_pred HHhCCC--eEEecCCCcHHHHHHHHHHHHHH--cCCcEEEEecCHHHHHHHHHHHHHHh-hhcC--CeEEEE
Q 002898 13 VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVH-RFLG--LSVGLI 77 (869)
Q Consensus 13 ~L~~G~--IaEm~TGEGKTLva~lpa~l~AL--~G~~V~VvT~ndyLA~RDae~~~~ly-~~LG--Lsv~~i 77 (869)
+|.+|. ++|+.||.|||+++++|+...+. .|++|.|.|||..|+.|-.+.+..+- +.+| +++.++
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~l 83 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFF 83 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 345555 89999999999999999976665 48899999999999999999888777 5555 444443
No 117
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.58 E-value=2e-07 Score=104.04 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=54.2
Q ss_pred cEEEEecchhhHHHHHHHHHHCCC---CeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 355 PVLVGSTSVENSEYLSDLLKQQGI---PHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 355 PVLV~t~Si~~SE~ls~~L~~~gi---~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
..+|||++..+++.|.+++.++|- .|.-|+++.+-+++-+++-...-..-...|+|+.|.||+||.
T Consensus 507 kaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 507 KAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred ceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 568999999999999999998874 677799986677777777664433457789999999999995
No 118
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.53 E-value=4.9e-06 Score=101.45 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=82.7
Q ss_pred hhHhhhcCcccccCCCcccH--HHHHHHHhCCC------eEEeCCCCCcc---cccCCCeEE--eChhHHHHHHHHHHHH
Q 002898 282 QSLFKLYPKLSGMTGTAKTE--EKEFLKMFQMP------VIEVPTNLPNI---RVDLPIQSF--ATARGKWEYARQEVES 348 (869)
Q Consensus 282 q~~Fr~Y~kL~GmTGTa~te--~~Ef~~iY~l~------vv~IPt~~p~~---R~d~~d~i~--~t~~~K~~aii~ei~~ 348 (869)
..+|+.+.....+|||+... -.-|.+.-|++ .+.+|+.++-. ..-.|+... .+..+...++++.|.+
T Consensus 450 ~~l~~~~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~ 529 (697)
T PRK11747 450 RLLWSRAPGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPE 529 (697)
T ss_pred HHHHhhCCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 45666777778888888652 23445555664 45677765431 111222211 2444556678888876
Q ss_pred HHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHH----HH--cCCCccEEEEcCCCcCCccee
Q 002898 349 MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETV----AQ--AGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 349 ~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Ii----a~--AG~~g~VTIATnmAGRGTDIk 420 (869)
....+.-+||+++|-+..+.++..|.... ...++--+ . ..+++ ++ .. +| .+.|.++|.-..=|+|+.
T Consensus 530 l~~~~gg~LVlFtSy~~l~~v~~~l~~~~-~~~ll~Q~-~-~~~~~-ll~~f~~~~~~~-~~~VL~g~~sf~EGVD~p 602 (697)
T PRK11747 530 LLEKHKGSLVLFASRRQMQKVADLLPRDL-RLMLLVQG-D-QPRQR-LLEKHKKRVDEG-EGSVLFGLQSFAEGLDLP 602 (697)
T ss_pred HHhcCCCEEEEeCcHHHHHHHHHHHHHhc-CCcEEEeC-C-chHHH-HHHHHHHHhccC-CCeEEEEeccccccccCC
Confidence 65545458999999999999999987531 22333221 1 12332 33 21 34 578999999999999997
No 119
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.41 E-value=2.5e-05 Score=96.47 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=71.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC------------cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGE------------GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER 86 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~------------~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~r 86 (869)
+....||.|||-+|+|.++ +.+.++ .+-=+.|-..|++--...+..=+..||++|+-.++++.. .+
T Consensus 329 LlCAPTGaGKTNVAvLtiL-qel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l-~~ 406 (1674)
T KOG0951|consen 329 LLCAPTGAGKTNVAVLTIL-QELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL-GK 406 (1674)
T ss_pred EEeccCCCCchHHHHHHHH-HHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc-hh
Confidence 8888899999999999995 777653 223355667888744444444466889999998887642 23
Q ss_pred HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 87 RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 87 k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
+..-..+|+.||+.. +|-+-.+=... ..++ -++.+|+||+|-
T Consensus 407 ~qieeTqVIV~TPEK--~DiITRk~gdr--aY~q----lvrLlIIDEIHL 448 (1674)
T KOG0951|consen 407 EQIEETQVIVTTPEK--WDIITRKSGDR--AYEQ----LVRLLIIDEIHL 448 (1674)
T ss_pred hhhhcceeEEeccch--hhhhhcccCch--hHHH----HHHHHhhhhhhh
Confidence 344457899999988 45553221100 1122 355789999885
No 120
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.33 E-value=2.3e-06 Score=84.76 Aligned_cols=134 Identities=19% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCchhhHHHHHHHh--------CCC-eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002898 2 RHFDVQIIGGAVLH--------DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (869)
Q Consensus 2 rp~dvQl~g~~~L~--------~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGL 72 (869)
.++|-|..+.-.+. .++ +..|.||.|||.+++..+. .+.. .+.++|||..|+.+-.+.+..+......
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~--~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~ 79 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL--ELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYN 79 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH--HHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh--cccc-ceeEecCHHHHHHHHHHHHHHhhhhhhh
Confidence 35566666666554 122 9999999999998885443 2322 9999999999999988888544432211
Q ss_pred eEEEE-----------cC--CCCHHHHHhccCCCeEEECCCchhhhHHHHhhcc----chhhhhccCCCCceEEEeechh
Q 002898 73 SVGLI-----------QR--GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAA----NSEQLVMRWPKPFHFAIVDEVD 135 (869)
Q Consensus 73 sv~~i-----------~~--~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~----~~~~~v~r~~R~~~~aIVDEvD 135 (869)
..... .. .............+|.+.|...+.-+.-...... ........ .++++|+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~vI~DEaH 156 (184)
T PF04851_consen 80 FFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN---KFDLVIIDEAH 156 (184)
T ss_dssp EEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG---SESEEEEETGG
T ss_pred hcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc---cCCEEEEehhh
Confidence 11110 11 1122233345567899999887643322110000 00112223 68899999999
Q ss_pred hhhhhc
Q 002898 136 SVLIDE 141 (869)
Q Consensus 136 siLiDe 141 (869)
.+--+.
T Consensus 157 ~~~~~~ 162 (184)
T PF04851_consen 157 HYPSDS 162 (184)
T ss_dssp CTHHHH
T ss_pred hcCCHH
Confidence 975443
No 121
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.19 E-value=0.00011 Score=90.65 Aligned_cols=122 Identities=21% Similarity=0.186 Sum_probs=72.7
Q ss_pred ccccCCCcccHHHHHHHHhC-CCeEEeCCC-CCcccccCCCeEEeChhH-HHHHHHHHHHHHHhcC-CcEEEEecchhhH
Q 002898 291 LSGMTGTAKTEEKEFLKMFQ-MPVIEVPTN-LPNIRVDLPIQSFATARG-KWEYARQEVESMFRLG-RPVLVGSTSVENS 366 (869)
Q Consensus 291 L~GmTGTa~te~~Ef~~iY~-l~vv~IPt~-~p~~R~d~~d~i~~t~~~-K~~aii~ei~~~~~~g-rPVLV~t~Si~~S 366 (869)
+.-||+|+.+ +.|.+.++ .+|+.||.- .|+...-.+.. ..+. -..+++.-|......+ -.||||.+-.++-
T Consensus 198 iIimSATld~--~rfs~~f~~apvi~i~GR~fPVei~Y~~~~---~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 198 LIIMSATLDA--ERFSAYFGNAPVIEIEGRTYPVEIRYLPEA---EADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEEecccCH--HHHHHHcCCCCEEEecCCccceEEEecCCC---CcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 4557888864 55777776 889999864 35432111111 1222 2334555454443333 4699999999999
Q ss_pred HHHHHHHHHC----CCCeEEeecCCcchhhHHHHHHHcCCCc-c-EEEEcCCCcCCcce
Q 002898 367 EYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKY-A-ITISTNMAGRGTDI 419 (869)
Q Consensus 367 E~ls~~L~~~----gi~~~vLna~~~~~~~Ea~Iia~AG~~g-~-VTIATnmAGRGTDI 419 (869)
+...+.|.+. .+...-|++.....++.+ ++.-+- .| + |.+|||+|-=++=|
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r-vF~p~~-~~~RKVVlATNIAETSLTI 329 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVR-VFEPAP-GGKRKVVLATNIAETSLTI 329 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHh-hcCCCC-CCcceEEEEccccccceee
Confidence 9999999872 244455777543333332 333222 22 3 99999999765544
No 122
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.19 E-value=8.7e-05 Score=92.55 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=95.7
Q ss_pred chhhHHHHHHH----hCCC----eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 4 FDVQIIGGAVL----HDGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 4 ~dvQl~g~~~L----~~G~----IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
+|=|+.++=.. .+|+ +++=.-|=|||-||+=+|+..+..|++|-|++||--||+|-++.|..=|.-++++|.
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~ 675 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIE 675 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEE
Confidence 35677777653 3555 888899999999999999988899999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 76 LIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 76 ~i~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
....=.+..+.++.. ..||++||..=++ . +.... .+..+||||=+.+
T Consensus 676 ~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-----k-------dv~Fk---dLGLlIIDEEqRF 728 (1139)
T COG1197 676 VLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-----K-------DVKFK---DLGLLIIDEEQRF 728 (1139)
T ss_pred EecccCCHHHHHHHHHHHhcCCccEEEechHhhC-----C-------CcEEe---cCCeEEEechhhc
Confidence 887766666655433 3599999996432 1 12334 7889999997775
No 123
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.18 E-value=1.9e-05 Score=95.44 Aligned_cols=65 Identities=28% Similarity=0.193 Sum_probs=53.8
Q ss_pred CCchhhHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHH
Q 002898 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERV 66 (869)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ndyLA~RDae~~~~l 66 (869)
+||+-|..-+- ++.+|+ ++|+.||.|||+.+++|+...+.. |+.|.|.|.|.-|-.|..++..|+
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 57788876553 445665 999999999999999999877764 589999999999988888887775
No 124
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.16 E-value=6.6e-06 Score=71.65 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=38.8
Q ss_pred HHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 371 DLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 371 ~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+.|+..|+++..+|+++...+++..+-. +.| .+.|+|||+++|+|+|+.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~ 50 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLP 50 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTST
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEEeecccccccccc
Confidence 4688999999999998666666544444 555 559999999999999994
No 125
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.16 E-value=3.2e-05 Score=92.97 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=83.3
Q ss_pred HHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHH---cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC-CCH
Q 002898 8 IIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG-MIP 83 (869)
Q Consensus 8 l~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL---~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~-~~~ 83 (869)
-++-++|.++-|+-..||.|||.+|+..++ +-+ .+..|.+++|+.-|-.|....+...... -++....++ .++
T Consensus 69 eivq~ALgkNtii~lPTG~GKTfIAa~Vm~-nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~ 145 (746)
T KOG0354|consen 69 ELVQPALGKNTIIALPTGSGKTFIAAVIMK-NHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPR 145 (746)
T ss_pred HHhHHhhcCCeEEEeecCCCccchHHHHHH-HHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCC
Confidence 466778877779999999999999998886 545 3457999999999988887666665544 444445555 334
Q ss_pred HHHHhccC-CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 84 EERRSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 84 ~~rk~aY~-~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
.-|-..|. ++|.+.||..+ ++.|.....+. +. .|..+|+||||.-
T Consensus 146 ~~r~~i~~s~~vff~TpQil-----~ndL~~~~~~~-ls---~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 146 SNRGEIVASKRVFFRTPQIL-----ENDLKSGLHDE-LS---DFSLIVFDECHRT 191 (746)
T ss_pred CchhhhhcccceEEeChHhh-----hhhcccccccc-cc---eEEEEEEcccccc
Confidence 44445565 49999999875 44443321111 34 6899999999974
No 126
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.07 E-value=0.00016 Score=85.39 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=69.5
Q ss_pred ccccCCCcccHHHHHHHHhC-CCeEEeCCC-CCcccccCCCeEEe--ChhHHHHHHHHHHHHHHhcCC--cEEEEecchh
Q 002898 291 LSGMTGTAKTEEKEFLKMFQ-MPVIEVPTN-LPNIRVDLPIQSFA--TARGKWEYARQEVESMFRLGR--PVLVGSTSVE 364 (869)
Q Consensus 291 L~GmTGTa~te~~Ef~~iY~-l~vv~IPt~-~p~~R~d~~d~i~~--t~~~K~~aii~ei~~~~~~gr--PVLV~t~Si~ 364 (869)
+.-||+|+. ++-|.+.|+ .+++.||.. .|+. ..|. ...+...+.+.-|...|.+-- =||||-+..+
T Consensus 198 lIimSATld--a~kfS~yF~~a~i~~i~GR~fPVe------i~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 198 LIIMSATLD--AEKFSEYFNNAPILTIPGRTFPVE------ILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEEEeeeec--HHHHHHHhcCCceEeecCCCCcee------EEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 455677775 455777554 488999973 3442 1222 234555677777777775433 3999999999
Q ss_pred hHHHHHHHHHHC------CCCe--EEeecCCcchhhHHHHHHHcCC--CccEEEEcCCCcC
Q 002898 365 NSEYLSDLLKQQ------GIPH--NVLNARPKYAAREAETVAQAGR--KYAITISTNMAGR 415 (869)
Q Consensus 365 ~SE~ls~~L~~~------gi~~--~vLna~~~~~~~Ea~Iia~AG~--~g~VTIATnmAGR 415 (869)
+.|...+.|.+. +.+. --++|... ..|..-|-.-.. .-.|.+|||+|-=
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~--~e~Q~rvF~p~p~g~RKvIlsTNIAET 328 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALP--SEEQSRVFDPAPPGKRKVILSTNIAET 328 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCC--HHHhhccccCCCCCcceEEEEcceeee
Confidence 999999998764 2211 12555422 223322222222 3379999999863
No 127
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.98 E-value=2.6e-05 Score=66.98 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 368 YLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 368 ~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+++.|...++++.++|+.+...+++..+..-......|.|+|+++|+|+|+.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~ 54 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLP 54 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChh
Confidence 57788888899999999975555555444443333569999999999999985
No 128
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.95 E-value=0.00019 Score=84.62 Aligned_cols=110 Identities=25% Similarity=0.283 Sum_probs=65.2
Q ss_pred hHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH-----HHHHHHHHHHHHHhhhcCCeEEEEc--C
Q 002898 7 QIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND-----YLAQRDAEWMERVHRFLGLSVGLIQ--R 79 (869)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd-----yLA~RDae~~~~ly~~LGLsv~~i~--~ 79 (869)
|++..+.=++=-|+--.||+|||.-.+=-+|.......|...+|--+ .+|+|-+++|+ --||=+||.-. .
T Consensus 363 ~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~---~~lG~~VGYsIRFE 439 (1042)
T KOG0924|consen 363 QLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG---VTLGDTVGYSIRFE 439 (1042)
T ss_pred HHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC---CccccccceEEEee
Confidence 44444443333366668999999765444443333334544455433 57899999985 23344444322 1
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
+.+.+ ..-|-|-|-|=| ||..+.. ..+. ++.++|+||||-
T Consensus 440 dvT~~------~T~IkymTDGiL----LrEsL~d----~~L~---kYSviImDEAHE 479 (1042)
T KOG0924|consen 440 DVTSE------DTKIKYMTDGIL----LRESLKD----RDLD---KYSVIIMDEAHE 479 (1042)
T ss_pred ecCCC------ceeEEEeccchH----HHHHhhh----hhhh---heeEEEechhhh
Confidence 11111 124889999876 6666543 3455 899999999996
No 129
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.86 E-value=0.00037 Score=82.16 Aligned_cols=113 Identities=27% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHH--HHc--CCcEEEEecCH----HHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLN--ALT--GEGVHVVTVND----YLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~--AL~--G~~V~VvT~nd----yLA~RDae~~~~ly~~LGLs 73 (869)
.||.-+++.++-=|+=-|+.-.||+|||.- +|=||. .++ |+.+.+--|-+ ..|.|.+++|+- .||-.
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgv---kLG~e 341 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGV---KLGHE 341 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCc---ccccc
Confidence 467788999888888889999999999963 566654 232 34444443433 467788888873 34444
Q ss_pred EEEEc--CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 74 VGLIQ--RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 74 v~~i~--~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
||.-. .+.+.+ ..=|-|-|-|-| ||.-+. +..+. ++.++||||||-
T Consensus 342 VGYsIRFEdcTSe------kTvlKYMTDGmL----lREfL~----epdLa---sYSViiiDEAHE 389 (902)
T KOG0923|consen 342 VGYSIRFEDCTSE------KTVLKYMTDGML----LREFLS----EPDLA---SYSVIIVDEAHE 389 (902)
T ss_pred cceEEEeccccCc------ceeeeeecchhH----HHHHhc----ccccc---ceeEEEeehhhh
Confidence 44321 111111 123778888765 554443 23455 789999999996
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.83 E-value=0.002 Score=78.15 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=75.0
Q ss_pred hhhHHHHH----HHhCCC---eEEecCCCcHHHHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 5 DVQIIGGA----VLHDGS---IAEMKTGEGKTLVSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 5 dvQl~g~~----~L~~G~---IaEm~TGEGKTLva~lpa~l~AL~G--~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
+-|+.++- ++++|+ +..|.||.|||-+|.-.+....=+| +.|..++=-..|-.|-.+.+..+.=+ |=.+.
T Consensus 168 yyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~~~~n 246 (875)
T COG4096 168 YYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-GTKMN 246 (875)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-cccee
Confidence 33555544 467888 9999999999998776666544455 68999999999999887775544322 22222
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhcc-CCCCceEEEeechhhh
Q 002898 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR-WPKPFHFAIVDEVDSV 137 (869)
Q Consensus 76 ~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r-~~R~~~~aIVDEvDsi 137 (869)
.+... ...-.|.|..+|--.+. ....+.. .-..+ .|..|+++||||+|+=
T Consensus 247 ~i~~~------~~~~s~~i~lsTyqt~~-----~~~~~~~-~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 247 KIEDK------KGDTSSEIYLSTYQTMT-----GRIEQKE-DEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred eeecc------cCCcceeEEEeehHHHH-----hhhhccc-cccccCCCCceeEEEechhhhh
Confidence 22211 11115789999987653 2222220 11111 2346999999999974
No 131
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00074 Score=84.34 Aligned_cols=124 Identities=23% Similarity=0.209 Sum_probs=88.7
Q ss_pred CchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
+.|-|-.++.+|-.|. ++...||.|||.++=.+.++.-..|.+|.-.||-..|..|-+-++...|.-.-=-+|+.+|+
T Consensus 120 LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGD 199 (1041)
T COG4581 120 LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGD 199 (1041)
T ss_pred cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecc
Confidence 5678999999998777 99999999999999998886556788999999999999988877776666440112333333
Q ss_pred CCHHHHHhccCCC-eEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC
Q 002898 81 MIPEERRSNYRCD-ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 81 ~~~~~rk~aY~~D-I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (869)
.+. .=.+. +++.| | +||.-+..+ .-.++ +..++|.||||-|= |.-|
T Consensus 200 v~I-----N~~A~clvMTT--E----ILRnMlyrg--~~~~~---~i~~ViFDEvHyi~-D~eR 246 (1041)
T COG4581 200 VSI-----NPDAPCLVMTT--E----ILRNMLYRG--SESLR---DIEWVVFDEVHYIG-DRER 246 (1041)
T ss_pred eee-----CCCCceEEeeH--H----HHHHHhccC--ccccc---ccceEEEEeeeecc-cccc
Confidence 221 11233 55555 4 577655544 24566 99999999999984 5433
No 132
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.53 E-value=0.0013 Score=81.41 Aligned_cols=111 Identities=23% Similarity=0.253 Sum_probs=71.0
Q ss_pred hHHHHHHHhCCCeEEecCCCcHHH-H--HHHHHHHHHHcCCcEEEEecCH------HHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 7 QIIGGAVLHDGSIAEMKTGEGKTL-V--STLAAYLNALTGEGVHVVTVND------YLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 7 Ql~g~~~L~~G~IaEm~TGEGKTL-v--a~lpa~l~AL~G~~V~VvT~nd------yLA~RDae~~~~ly~~LGLsv~~i 77 (869)
+++-++-=++=-|+-=.||.|||. + |.|-.+ .-.|..|-|||.-. .+|+|-+.+- ...+|-+||..
T Consensus 180 ~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~--~~~~~~~~IicTQPRRIsAIsvAeRVa~ER---~~~~g~~VGYq 254 (924)
T KOG0920|consen 180 TILDAIEENQVVVISGETGCGKTTQVPQFILDEA--IESGAACNIICTQPRRISAISVAERVAKER---GESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHH--HhcCCCCeEEecCCchHHHHHHHHHHHHHh---ccccCCeeeEE
Confidence 444444444444666789999996 3 333322 23456666666544 5888888776 67788888876
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 78 ~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..-. ++.....-++|+|.|-| || .+.. +.++. +...+||||||-=
T Consensus 255 vrl~----~~~s~~t~L~fcTtGvL----Lr-~L~~---~~~l~---~vthiivDEVHER 299 (924)
T KOG0920|consen 255 VRLE----SKRSRETRLLFCTTGVL----LR-RLQS---DPTLS---GVTHIIVDEVHER 299 (924)
T ss_pred Eeee----cccCCceeEEEecHHHH----HH-Hhcc---Ccccc---cCceeeeeeEEEc
Confidence 5432 22344467999999875 44 3332 24555 8889999999963
No 133
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.43 E-value=0.068 Score=64.74 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=68.9
Q ss_pred eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCC---ccEEEE
Q 002898 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRK---YAITIS 409 (869)
Q Consensus 333 ~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~---g~VTIA 409 (869)
++...|+.-+=..+...+++|..||||..=...-+.|-+++.-+|....-|.|...+.+|++.|-+---.+ ---.++
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 45556776555666778899999999999888889999999889999889999877888888887733222 356789
Q ss_pred cCCCcCCccee
Q 002898 410 TNMAGRGTDII 420 (869)
Q Consensus 410 TnmAGRGTDIk 420 (869)
|.-.|-|+...
T Consensus 547 TRAGGLGINL~ 557 (971)
T KOG0385|consen 547 TRAGGLGINLT 557 (971)
T ss_pred ccccccccccc
Confidence 99888887653
No 134
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.30 E-value=0.0007 Score=82.52 Aligned_cols=109 Identities=20% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCeEEecCCCcHHHHHHHHHHH--HHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--hccCC
Q 002898 17 GSIAEMKTGEGKTLVSTLAAYL--NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR--SNYRC 92 (869)
Q Consensus 17 G~IaEm~TGEGKTLva~lpa~l--~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk--~aY~~ 92 (869)
+-+..|.||+|||++++..+.. ..+.+..|.|||+...|..|-.+.|..+.. -.+..+ +....-++ ....+
T Consensus 265 ~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~---~~~~~~--~s~~~L~~~l~~~~~ 339 (667)
T TIGR00348 265 GGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK---DCAERI--ESIAELKRLLEKDDG 339 (667)
T ss_pred eeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC---CCCccc--CCHHHHHHHHhCCCC
Confidence 3499999999999988777652 224557899999999999998888776542 111111 11111122 12346
Q ss_pred CeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 93 DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 93 DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
+|+++|..-|.- .+.+.+.. ... .+...++||||||+.
T Consensus 340 ~iivtTiQk~~~-~~~~~~~~----~~~--~~~~~lvIvDEaHrs 377 (667)
T TIGR00348 340 GIIITTIQKFDK-KLKEEEEK----FPV--DRKEVVVIFDEAHRS 377 (667)
T ss_pred CEEEEEhHHhhh-hHhhhhhc----cCC--CCCCEEEEEEcCccc
Confidence 899999987631 11111110 001 113348999999974
No 135
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.28 E-value=0.011 Score=71.49 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=63.6
Q ss_pred eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHH-HCCCCeEEeecCCcchhhHHHHHH--HcCCCccE-EE
Q 002898 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK-QQGIPHNVLNARPKYAAREAETVA--QAGRKYAI-TI 408 (869)
Q Consensus 333 ~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~-~~gi~~~vLna~~~~~~~Ea~Iia--~AG~~g~V-TI 408 (869)
.....|...+...+...+++|..||+|+.|...-..|-..|. ..|+.+--+.+...-..|- .+|. +++..-.| .+
T Consensus 526 ~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~-~lVd~Fne~~s~~VFLL 604 (923)
T KOG0387|consen 526 PKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQ-KLVDRFNEDESIFVFLL 604 (923)
T ss_pred hhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhh-HHHHhhcCCCceEEEEE
Confidence 445568888888888889999999999999999999999998 6899998888864444444 3443 44444433 45
Q ss_pred EcCCCcCCcce
Q 002898 409 STNMAGRGTDI 419 (869)
Q Consensus 409 ATnmAGRGTDI 419 (869)
.|..-|-|+..
T Consensus 605 TTrvGGLGlNL 615 (923)
T KOG0387|consen 605 TTRVGGLGLNL 615 (923)
T ss_pred Eeccccccccc
Confidence 56666666544
No 136
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.16 E-value=0.0031 Score=75.44 Aligned_cols=116 Identities=23% Similarity=0.276 Sum_probs=82.2
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~ 81 (869)
|-|-.++.++-.|. ++-+.|-.|||.+|--+++ .+|..+ +|---+|=..|+.|-+-++..=|.=-||=+|-++=+
T Consensus 132 pFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTIn- 209 (1041)
T KOG0948|consen 132 PFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTIN- 209 (1041)
T ss_pred chHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeC-
Confidence 45888888887777 8999999999999998887 688765 566666778999988888777676666665533311
Q ss_pred CHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhc
Q 002898 82 IPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (869)
Q Consensus 82 ~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (869)
|. +...|-.| ..||.-+..+. -+.| ...++|.||+|-|- |.
T Consensus 210 -P~------ASCLVMTT------EILRsMLYRGS--Evmr---EVaWVIFDEIHYMR-Dk 250 (1041)
T KOG0948|consen 210 -PD------ASCLVMTT------EILRSMLYRGS--EVMR---EVAWVIFDEIHYMR-DK 250 (1041)
T ss_pred -CC------CceeeeHH------HHHHHHHhccc--hHhh---eeeeEEeeeehhcc-cc
Confidence 11 01122222 24776666543 4677 99999999999985 54
No 137
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.14 E-value=0.0016 Score=71.57 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCchhhHH----HHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC-----cEEEEecCHHHHHHHHHHHHHHh
Q 002898 2 RHFDVQII----GGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 2 rp~dvQl~----g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~-----~V~VvT~ndyLA~RDae~~~~ly 67 (869)
.|||.|+. ..-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 47888887 222455565 899999999999999999644443 43 79999999999888877776653
No 138
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.14 E-value=0.0016 Score=71.57 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCchhhHH----HHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC-----cEEEEecCHHHHHHHHHHHHHHh
Q 002898 2 RHFDVQII----GGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE-----GVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 2 rp~dvQl~----g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~-----~V~VvT~ndyLA~RDae~~~~ly 67 (869)
.|||.|+. ..-.+.+|. |+|+.||.|||+++++|++..+.. +. .|.++|.+..+.++...++..+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 47888887 222455565 899999999999999999644443 43 79999999999888877776653
No 139
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=96.95 E-value=0.0052 Score=75.46 Aligned_cols=131 Identities=21% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCchhhHHHHH--HHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 2 RHFDVQIIGGA--VLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 2 rp~dvQl~g~~--~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.+|+.|..+.- .+++|+ |--..|+-|||||+.+......|. ++.|..+-|=-.-++--.+.|.+|..-+|+.|-.
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 35777776654 344444 888999999999999998877765 5667777766666777778899999999999998
Q ss_pred EcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC
Q 002898 77 IQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 77 i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (869)
..|..+|+-+++. -+|..+|..- + .-|-+.+-.. --.. .+..++|||.|-+ .|.+|
T Consensus 303 y~g~~~p~~~~k~--~sv~i~tiEk-a-nslin~lie~---g~~~---~~g~vvVdElhmi-~d~~r 358 (1008)
T KOG0950|consen 303 YAGRFPPEKRRKR--ESVAIATIEK-A-NSLINSLIEQ---GRLD---FLGMVVVDELHMI-GDKGR 358 (1008)
T ss_pred hcccCCCCCcccc--eeeeeeehHh-h-HhHHHHHHhc---CCcc---ccCcEEEeeeeee-ecccc
Confidence 8888777655432 3577777532 1 1122222111 0111 5778999998865 57654
No 140
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.14 E-value=0.011 Score=58.99 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=53.6
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCC
Q 002898 16 DGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRC 92 (869)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~ 92 (869)
+|. +..+.+|.|||--.+--.+-.++ .+..|.|+.|++.+|. +|.+-.+-+ .+.+...-.. ...+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~----em~~aL~~~--~~~~~t~~~~----~~~~g~ 72 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAE----EMYEALKGL--PVRFHTNARM----RTHFGS 72 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHH----HHHHHTTTS--SEEEESTTSS--------SS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHH----HHHHHHhcC--CcccCceeee----ccccCC
Confidence 455 78889999999754333333455 4679999999999997 555554533 4443322211 123443
Q ss_pred -CeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 93 -DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 93 -DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
-|++-|-+-| ..|+.+ +. . .+ .++|+|+||+|+.
T Consensus 73 ~~i~vMc~at~-~~~~~~-----p~-~-~~---~yd~II~DEcH~~ 107 (148)
T PF07652_consen 73 SIIDVMCHATY-GHFLLN-----PC-R-LK---NYDVIIMDECHFT 107 (148)
T ss_dssp SSEEEEEHHHH-HHHHHT-----SS-C-TT---S-SEEEECTTT--
T ss_pred CcccccccHHH-HHHhcC-----cc-c-cc---CccEEEEeccccC
Confidence 3555555543 222322 11 1 23 8999999999984
No 141
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=96.09 E-value=0.14 Score=59.50 Aligned_cols=120 Identities=20% Similarity=0.296 Sum_probs=73.9
Q ss_pred hhHHHHHHHh-CCC----eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 6 VQIIGGAVLH-DGS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 6 vQl~g~~~L~-~G~----IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
-|-.+.--|+ +|+ |+-..-|.|||||-+-++. --.+.|.|+|.|..=.. +|-.+|..|-.+.-..++.=
T Consensus 306 YQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---tikK~clvLcts~VSVe---QWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 306 YQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---TIKKSCLVLCTSAVSVE---QWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred hHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---eecccEEEEecCccCHH---HHHHHHHhhcccCccceEEe
Confidence 3666666554 566 8889999999998655443 23578999998876655 46666766666654433321
Q ss_pred CCHHHH-HhccCCCeEEECCCchhhhHHHHhhccchhhhh---ccCCCCceEEEeechhhh
Q 002898 81 MIPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQLV---MRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 81 ~~~~~r-k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v---~r~~R~~~~aIVDEvDsi 137 (869)
+.+.+ +..-+|+|+++|-+=+++.-=|.. . .+.+ ++ .|.-.++|+||||.|
T Consensus 380 -Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~---e-aek~m~~l~-~~EWGllllDEVHvv 434 (776)
T KOG1123|consen 380 -TSDAKERFPSGAGVVVTTYSMVAYTGKRSH---E-AEKIMDFLR-GREWGLLLLDEVHVV 434 (776)
T ss_pred -eccccccCCCCCcEEEEeeehhhhcccccH---H-HHHHHHHHh-cCeeeeEEeehhccc
Confidence 11111 123468999999876543211111 0 1111 22 347889999999997
No 142
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.03 E-value=0.015 Score=62.43 Aligned_cols=109 Identities=21% Similarity=0.307 Sum_probs=58.3
Q ss_pred CCCeEEecCCCcHHHHHHHHHH-HHHHcCC----cEEEEecCHHHHHHHHHHHHHHhhhc---CCeEEEEcCCCCHHHHH
Q 002898 16 DGSIAEMKTGEGKTLVSTLAAY-LNALTGE----GVHVVTVNDYLAQRDAEWMERVHRFL---GLSVGLIQRGMIPEERR 87 (869)
Q Consensus 16 ~G~IaEm~TGEGKTLva~lpa~-l~AL~G~----~V~VvT~ndyLA~RDae~~~~ly~~L---GLsv~~i~~~~~~~~rk 87 (869)
.|-|.--.+|.|||++++..+. +...... .+.||+|+.-+. .|...+..++ .+.+....+.. ...+.
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~----~W~~E~~~~~~~~~~~v~~~~~~~-~~~~~ 100 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLS----QWKEEIEKWFDPDSLRVIIYDGDS-ERRRL 100 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHH----HHHHHHHHHSGT-TS-EEEESSSC-HHHHT
T ss_pred CCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhh----hhhhhhcccccccccccccccccc-ccccc
Confidence 3447777899999987665553 3332222 499999995553 3666666665 56666665543 11111
Q ss_pred ---hccCCCeEEECCCchhhhHHHHh-hccchhhhhccCCCCceEEEeechhhh
Q 002898 88 ---SNYRCDITYTNNSELGFDYLRDN-LAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 88 ---~aY~~DI~YgT~~e~~fDyLrD~-l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..-..+|+..|-+.+ +.. .....+..... +++++||||+|.+
T Consensus 101 ~~~~~~~~~vvi~ty~~~-----~~~~~~~~~~~l~~~---~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETL-----RKARKKKDKEDLKQI---KWDRVIVDEAHRL 146 (299)
T ss_dssp TSSSCCCSSEEEEEHHHH-----H--TSTHTTHHHHTS---EEEEEEETTGGGG
T ss_pred cccccccceeeecccccc-----ccccccccccccccc---cceeEEEeccccc
Confidence 122357887776553 300 00111112223 6899999999997
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.02 E-value=0.036 Score=67.69 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcC-CeEEEEcCCCCHHHHHhccC------CCeE
Q 002898 24 TGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLG-LSVGLIQRGMIPEERRSNYR------CDIT 95 (869)
Q Consensus 24 TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LG-Lsv~~i~~~~~~~~rk~aY~------~DI~ 95 (869)
+|+|||-+++=.+. .+| .|++|.|+.|.-.|..|-.+.+. ..|| -.|+...+++++.+|...|. ++|+
T Consensus 169 ~GSGKTevyl~~i~-~~l~~Gk~vLvLvPEi~lt~q~~~rl~---~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 169 PGEDWARRLAAAAA-ATLRAGRGALVVVPDQRDVDRLEAALR---ALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred CCCcHHHHHHHHHH-HHHHcCCeEEEEecchhhHHHHHHHHH---HHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 69999999877775 444 59999999999999998666655 4556 78999999999999987763 5899
Q ss_pred EECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 96 YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
.||=+-+ | + -.+ ++..+||||=|.
T Consensus 245 iGtRSAv-F--a-----------P~~---~LgLIIvdEEhd 268 (665)
T PRK14873 245 VGTRSAV-F--A-----------PVE---DLGLVAIWDDGD 268 (665)
T ss_pred EEcceeE-E--e-----------ccC---CCCEEEEEcCCc
Confidence 9998875 1 1 123 678888887653
No 144
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=95.44 E-value=1.1 Score=57.29 Aligned_cols=332 Identities=19% Similarity=0.257 Sum_probs=168.9
Q ss_pred CCeEEecCCCcHHH-HHHHHHHH-HHHcC-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCC
Q 002898 17 GSIAEMKTGEGKTL-VSTLAAYL-NALTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCD 93 (869)
Q Consensus 17 G~IaEm~TGEGKTL-va~lpa~l-~AL~G-~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~D 93 (869)
+.|.-=.-|=|||+ +.++..|| +.+.= .+..||+|=.+++ .|-+.|-.+..+.+.+..|+....+-...|.
T Consensus 391 n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~----~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye-- 464 (1373)
T KOG0384|consen 391 NCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT----AWEREFETWTDMNVIVYHGNLESRQLIRQYE-- 464 (1373)
T ss_pred cceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH----HHHHHHHHHhhhceeeeecchhHHHHHHHHH--
Confidence 33555556999998 45555543 33322 2567888877776 4999999999999999888866544444554
Q ss_pred eEEECC-CchhhhHHHHhhccc-hhhhhccCCCCceEEEeechhhhhhhc-----------CCCceeecCCCCCCcccHH
Q 002898 94 ITYTNN-SELGFDYLRDNLAAN-SEQLVMRWPKPFHFAIVDEVDSVLIDE-----------GRNPLLISGEASKDVARYP 160 (869)
Q Consensus 94 I~YgT~-~e~~fDyLrD~l~~~-~~~~v~r~~R~~~~aIVDEvDsiLiDe-----------a~tPLiiSg~~~~~~~~~~ 160 (869)
.++..+ +.+.|+-|..-+..- .+..+++ .=+..|++|||||+.=-++ -.+-|.|+|.+-.++ ..
T Consensus 465 ~~~~~~~~~lkf~~lltTye~~LkDk~~L~-~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNs--ik 541 (1373)
T KOG0384|consen 465 FYHSSNTKKLKFNALLTTYEIVLKDKAELS-KIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNS--LK 541 (1373)
T ss_pred heecCCccccccceeehhhHHHhccHhhhc-cCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCcccc--HH
Confidence 444442 344455443222110 0112332 1156799999999854333 233456666432221 11
Q ss_pred HHHHHHHHcccCCCeEEeC--CCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEECCeEE
Q 002898 161 VAAKVAELLVQGLHYTVEL--KNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKAL 238 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~--~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ 238 (869)
.+..++..+.++.+...++ .+. -.-|+.|+..+...+. .++. +.
T Consensus 542 EL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~------------P~~l-----Rr---------------- 587 (1373)
T KOG0384|consen 542 ELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILK------------PFLL-----RR---------------- 587 (1373)
T ss_pred HHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhh------------HHHH-----HH----------------
Confidence 2222333333321111000 000 0112233332222111 0111 01
Q ss_pred EEeCCCCccccccccChhhhHHHHhhhCCc--cccCcceeeeeee---hhHh------hhcCcc-cccCCCccc---HHH
Q 002898 239 IINELTGRVEEKRRWSEGIHQAVEAKEGLK--IQADSVVVAQITY---QSLF------KLYPKL-SGMTGTAKT---EEK 303 (869)
Q Consensus 239 ivDe~TGR~~~gr~ws~GLHQaieaKEgv~--i~~e~~t~a~It~---q~~F------r~Y~kL-~GmTGTa~t---e~~ 303 (869)
.|+.|+ +.|...++-.+-. |..| |.|.-| -|..|+.-+ -.-
T Consensus 588 ------------------------~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimm 643 (1373)
T KOG0384|consen 588 ------------------------LKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMM 643 (1373)
T ss_pred ------------------------HHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHH
Confidence 122222 1122222222221 2211 333322 244444322 245
Q ss_pred HHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHH---------H-HHHHHhcCCcEEEEecchhhHHHHHHHH
Q 002898 304 EFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQ---------E-VESMFRLGRPVLVGSTSVENSEYLSDLL 373 (869)
Q Consensus 304 Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~---------e-i~~~~~~grPVLV~t~Si~~SE~ls~~L 373 (869)
||.+--|-++..=|.- .....+..+ ...+..+.++|. . +-+..+.|-.||||..=+..-+.|+++|
T Consensus 644 ELkKccNHpyLi~gae-e~~~~~~~~---~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL 719 (1373)
T KOG0384|consen 644 ELKKCCNHPYLIKGAE-EKILGDFRD---KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYL 719 (1373)
T ss_pred HHHHhcCCccccCcHH-HHHHHhhhh---cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHH
Confidence 6766666555432221 111111111 013344455432 2 2244578899999999999999999999
Q ss_pred HHCCCCeEEeecCCcchhhHHHHHHHcCCCc----cEEEEcCCCcCCccee
Q 002898 374 KQQGIPHNVLNARPKYAAREAETVAQAGRKY----AITISTNMAGRGTDII 420 (869)
Q Consensus 374 ~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g----~VTIATnmAGRGTDIk 420 (869)
..+|+|++-|.|..+-.-|.+.|-..- .++ .-+++|.--|-|+...
T Consensus 720 ~~r~ypfQRLDGsvrgelRq~AIDhFn-ap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 720 SLRGYPFQRLDGSVRGELRQQAIDHFN-APDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred HHcCCcceeccCCcchHHHHHHHHhcc-CCCCCceEEEEecccCccccccc
Confidence 999999999999755555555555422 133 6789999999998653
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=95.26 E-value=1.1 Score=52.50 Aligned_cols=86 Identities=12% Similarity=0.002 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHH----HHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCC-ccEEE-
Q 002898 335 ARGKWEYARQEVES----MFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRK-YAITI- 408 (869)
Q Consensus 335 ~~~K~~aii~ei~~----~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~-g~VTI- 408 (869)
...|..++++.+.. .-+.++.+||||.-...-+.+...+.++++++--+++....++|+.-. +..|- -.|-|
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~--qsFQ~seev~VA 547 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC--QSFQTSEEVRVA 547 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH--HHhccccceEEE
Confidence 34577778888877 457889999999999999999999999999999999975555555433 33332 22333
Q ss_pred --EcCCCcCCcceecC
Q 002898 409 --STNMAGRGTDIILG 422 (869)
Q Consensus 409 --ATnmAGRGTDIkLg 422 (869)
+---||=|.|+.-+
T Consensus 548 vlsItA~gvGLt~tAa 563 (689)
T KOG1000|consen 548 VLSITAAGVGLTLTAA 563 (689)
T ss_pred EEEEeecccceeeecc
Confidence 23457778887643
No 146
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.20 E-value=3.2 Score=51.63 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHHHHhcCCc---EEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 334 TARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 334 t~~~K~~aii~ei~~~~~~grP---VLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
+..+....|++.|.+.+..|.+ +.|.+++-..+..+...|.+.|||+.+..+.
T Consensus 325 ~~~~Ea~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~~ 380 (721)
T PRK11773 325 NELDEARFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGM 380 (721)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccEEEEEecchhHHHHHHHHHHCCCCEEEECCC
Confidence 4445566788999888777743 8888999999999999999999999988764
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.09 Score=64.63 Aligned_cols=97 Identities=27% Similarity=0.344 Sum_probs=75.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------C
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------R 91 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~ 91 (869)
+..--||+|||-+++=.+. .+| .|++|.|+.|-=.|--|-.+. |-..||.++++..+++++.+|...+ .
T Consensus 221 Ll~GvTGSGKTEvYl~~i~-~~L~~GkqvLvLVPEI~Ltpq~~~r---f~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIA-KVLAQGKQVLVLVPEIALTPQLLAR---FKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred eEeCCCCCcHHHHHHHHHH-HHHHcCCEEEEEeccccchHHHHHH---HHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 8888999999999876665 555 689999999988887765444 4556679999999999998886543 3
Q ss_pred CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 92 CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 92 ~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
+.||.||-+.+ | .-.. ++..+||||=|.
T Consensus 297 ~~vVIGtRSAl-F-------------~Pf~---~LGLIIvDEEHD 324 (730)
T COG1198 297 ARVVIGTRSAL-F-------------LPFK---NLGLIIVDEEHD 324 (730)
T ss_pred ceEEEEechhh-c-------------Cchh---hccEEEEecccc
Confidence 68999999875 1 1123 788999999764
No 148
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=94.67 E-value=0.66 Score=57.86 Aligned_cols=119 Identities=21% Similarity=0.180 Sum_probs=88.1
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~ 82 (869)
.-|-.++..|..|. .+-+.|-.|||+||=-++++.--.|.+..--+|=..|+.|-+-+|+.-|.--| +++|+..
T Consensus 300 ~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvq 375 (1248)
T KOG0947|consen 300 TFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQ 375 (1248)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc----eeeccee
Confidence 46899999999998 88899999999999888887667777777788889999998888888887666 4555421
Q ss_pred HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC
Q 002898 83 PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 83 ~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (869)
..=.|.++.-|-. .||..+..+. -+.| .+.|+|.||||=| -|.-|
T Consensus 376 -----inPeAsCLIMTTE-----ILRsMLYrga--dliR---DvE~VIFDEVHYi-ND~eR 420 (1248)
T KOG0947|consen 376 -----INPEASCLIMTTE-----ILRSMLYRGA--DLIR---DVEFVIFDEVHYI-NDVER 420 (1248)
T ss_pred -----eCCCcceEeehHH-----HHHHHHhccc--chhh---ccceEEEeeeeec-ccccc
Confidence 1112445555542 3776665542 4567 9999999999986 35543
No 149
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.59 E-value=0.2 Score=58.97 Aligned_cols=133 Identities=21% Similarity=0.264 Sum_probs=98.7
Q ss_pred eeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe--EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcE
Q 002898 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV--IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPV 356 (869)
Q Consensus 279 It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v--v~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPV 356 (869)
.+|..|-.+-.+..-+|+|-|..+-|.. =|--| ++=||.... |.........+..-++.+|..+.++|-.|
T Consensus 377 L~feEf~~~~~q~i~VSATPg~~E~e~s--~~~vveQiIRPTGLlD-----P~ievRp~~~QvdDL~~EI~~r~~~~eRv 449 (663)
T COG0556 377 LKFEEFEAKIPQTIYVSATPGDYELEQS--GGNVVEQIIRPTGLLD-----PEIEVRPTKGQVDDLLSEIRKRVAKNERV 449 (663)
T ss_pred CCHHHHHHhcCCEEEEECCCChHHHHhc--cCceeEEeecCCCCCC-----CceeeecCCCcHHHHHHHHHHHHhcCCeE
Confidence 4566666666788889999997543332 22222 333775432 33344556678888999999999999999
Q ss_pred EEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH--HcCCCccEEEEcCCCcCCccee
Q 002898 357 LVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 357 LV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia--~AG~~g~VTIATnmAGRGTDIk 420 (869)
||-|-|+..||.|.+.|.+.||+...||...+.-+| .+||. +.| .-.|.|--|+.--|.||.
T Consensus 450 LVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER-~eIirdLR~G-~~DvLVGINLLREGLDiP 513 (663)
T COG0556 450 LVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLER-VEIIRDLRLG-EFDVLVGINLLREGLDLP 513 (663)
T ss_pred EEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHH-HHHHHHHhcC-CccEEEeehhhhccCCCc
Confidence 999999999999999999999999999996433333 25665 555 457999999999999994
No 150
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.58 E-value=0.66 Score=49.75 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=78.6
Q ss_pred hhhHHHHHHHhC-----CCeEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEE
Q 002898 5 DVQIIGGAVLHD-----GSIAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLI 77 (869)
Q Consensus 5 dvQl~g~~~L~~-----G~IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly-~~LGLsv~~i 77 (869)
++|.--+-.|.+ +.+.||.+|||||-|. +|++..+| .|...-.+.+=..|.++-.+-+..-+ ..+|=.+-.+
T Consensus 26 ~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~l 104 (229)
T PF12340_consen 26 PVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHL 104 (229)
T ss_pred HHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 456655555542 4599999999999754 34433455 46565555555678888777766443 4556555543
Q ss_pred cC--C--CCHHH----HH---hc-cCCCeEEECCCchh------hhHHHHhhccchh-----hhhccCCCCceEEEeech
Q 002898 78 QR--G--MIPEE----RR---SN-YRCDITYTNNSELG------FDYLRDNLAANSE-----QLVMRWPKPFHFAIVDEV 134 (869)
Q Consensus 78 ~~--~--~~~~~----rk---~a-Y~~DI~YgT~~e~~------fDyLrD~l~~~~~-----~~v~r~~R~~~~aIVDEv 134 (869)
.= + .+++. ++ .+ -...|+.+||..+- .+.+.|.-..... ...+. ....-|+||.
T Consensus 105 pFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~---~~~rdilDEs 181 (229)
T PF12340_consen 105 PFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD---EHSRDILDES 181 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---hcCCeEeECc
Confidence 21 1 22221 11 11 13479999998752 2222111100000 11122 3444799999
Q ss_pred hhhhhhcCCCceeecC
Q 002898 135 DSVLIDEGRNPLLISG 150 (869)
Q Consensus 135 DsiLiDea~tPLiiSg 150 (869)
|-+|- .++-||.+.
T Consensus 182 De~L~--~k~qLiY~~ 195 (229)
T PF12340_consen 182 DEILS--VKYQLIYTM 195 (229)
T ss_pred hhccC--cceEEEecC
Confidence 99984 788888863
No 151
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.20 E-value=3.5 Score=51.17 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=66.6
Q ss_pred chhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~l~AL~--G---~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
-|-|.-++-. .+|. ++-..-|+|||.|.+--+. ..+. | ..+.++|.|.--|..-.+.+. ..+|-.
T Consensus 6 n~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria-~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~---~~~~~~---- 76 (726)
T TIGR01073 6 NPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIA-HLIAEKNVAPWNILAITFTNKAAREMKERVE---KLLGPV---- 76 (726)
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHH-HHHHcCCCCHHHeeeeeccHHHHHHHHHHHH---HHhccc----
Confidence 3566665543 3566 8889999999988776654 2232 3 468999999877764333333 333310
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 78 ~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..++..+|...|+...|+..... ... +.+|-|+|+.|..
T Consensus 77 -------------~~~~~i~TFHs~~~~iLr~~~~~----~g~----~~~f~i~d~~~~~ 115 (726)
T TIGR01073 77 -------------AEDIWISTFHSMCVRILRRDIDR----IGI----NRNFSIIDPTDQL 115 (726)
T ss_pred -------------cCCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCCcCCHHHHH
Confidence 13588899999999999865321 111 3456689998853
No 152
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.16 E-value=1.8 Score=53.86 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=52.7
Q ss_pred HHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCccee
Q 002898 348 SMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 348 ~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIk 420 (869)
.....|.-|-||++|+..++.+++.....+-..-++|++.+.. ++ +-...-+|.|=|..-.=|+++.
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~----dv--~~W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE----DV--ESWKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc----cc--ccccceeEEEEeceEEEEeccc
Confidence 3346799999999999999999999988887888888853322 23 2355778999999999999884
No 153
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.84 E-value=8.6 Score=47.75 Aligned_cols=104 Identities=24% Similarity=0.210 Sum_probs=67.1
Q ss_pred chhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~l~AL~--G---~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
-|-|.-++-. ..|. ++-..-|+|||-|.+--+. .-+. | ..+.++|.|.-.|.--.+. +...+|-.
T Consensus 6 n~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~~v~p~~IL~lTFTnkAA~em~~R---l~~~~~~~---- 76 (715)
T TIGR01075 6 NDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIA-WLLSVENASPHSIMAVTFTNKAAAEMRHR---IGALLGTS---- 76 (715)
T ss_pred CHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHcCCCCHHHeEeeeccHHHHHHHHHH---HHHHhccc----
Confidence 3556554432 3466 8888999999988666554 2232 3 4689999999988743333 33444421
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 78 ~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..++..+|...|++..||..... ... +.+|-|+|+.|..
T Consensus 77 -------------~~~~~i~TfHs~~~~iLr~~~~~----~g~----~~~f~i~d~~d~~ 115 (715)
T TIGR01075 77 -------------ARGMWIGTFHGLAHRLLRAHHLD----AGL----PQDFQILDSDDQL 115 (715)
T ss_pred -------------ccCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCeecCHHHHH
Confidence 12578899999999999865311 111 3457789998864
No 154
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.96 E-value=6.5 Score=48.59 Aligned_cols=108 Identities=27% Similarity=0.313 Sum_probs=69.4
Q ss_pred CCCchhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHH--cC---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL--TG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~l~AL--~G---~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
|+.-+-|.-++-. ..|. ++-..-|+|||.|.+--+. .-+ .| ..+.++|.|+--|.--.+ .+-..+|-..
T Consensus 1 ~~Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria-~Li~~~~v~p~~IL~lTFT~kAA~em~~---Rl~~~l~~~~ 75 (672)
T PRK10919 1 MRLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIA-HLIRGCGYQARHIAAVTFTNKAAREMKE---RVAQTLGRKE 75 (672)
T ss_pred CCCCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcCCCHHHeeeEechHHHHHHHHH---HHHHHhCccc
Confidence 4556777666543 2466 7888999999987666554 223 23 468999999998873222 3333444210
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 75 ~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
...|..+|...|++..|+..... ... +.+|-|+|+.|..
T Consensus 76 ----------------~~~v~i~TfHS~~~~iLr~~~~~----~g~----~~~~~i~d~~~~~ 114 (672)
T PRK10919 76 ----------------ARGLMISTFHTLGLDIIKREYAA----LGM----KSNFSLFDDTDQL 114 (672)
T ss_pred ----------------ccCcEEEcHHHHHHHHHHHHHHH----hCC----CCCCeeCCHHHHH
Confidence 13488899999999999874321 111 2357788988763
No 155
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=92.51 E-value=0.39 Score=58.72 Aligned_cols=130 Identities=26% Similarity=0.413 Sum_probs=85.0
Q ss_pred hhhHHHHHH---HhCCC---eEEecCCCcHHH-HHHHHHHHHHHcCCcEE-EEecCHHHHHHHHHHHHHHhhhc-CCeEE
Q 002898 5 DVQIIGGAV---LHDGS---IAEMKTGEGKTL-VSTLAAYLNALTGEGVH-VVTVNDYLAQRDAEWMERVHRFL-GLSVG 75 (869)
Q Consensus 5 dvQl~g~~~---L~~G~---IaEm~TGEGKTL-va~lpa~l~AL~G~~V~-VvT~ndyLA~RDae~~~~ly~~L-GLsv~ 75 (869)
|-|++|+=- |++.. |.-=.-|=|||. |.++.|||.-..-.|-| ||+|+.-|- .|.+.|-.|. .|+|-
T Consensus 402 dYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle----NWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 402 DYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE----NWLREFAKWCPSLKVE 477 (941)
T ss_pred chhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH----HHHHHHHHhCCceEEE
Confidence 568998753 33322 444456899998 78888887666555665 788888886 5999999998 68888
Q ss_pred EEcCCCCHHHHHhc-------c-CCCeEEECCCchhhhHHHHhhccchhh-hhccCCCCceEEEeechhhhhhhc-----
Q 002898 76 LIQRGMIPEERRSN-------Y-RCDITYTNNSELGFDYLRDNLAANSEQ-LVMRWPKPFHFAIVDEVDSVLIDE----- 141 (869)
Q Consensus 76 ~i~~~~~~~~rk~a-------Y-~~DI~YgT~~e~~fDyLrD~l~~~~~~-~v~r~~R~~~~aIVDEvDsiLiDe----- 141 (869)
..+|.. ++|++. + .-||+..|=+-++ .++++ .++| ...|+|||.||.|- |=+.
T Consensus 478 ~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la~---------~~kdDRsflk-~~~~n~viyDEgHm-LKN~~SeRy 544 (941)
T KOG0389|consen 478 PYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLAA---------SSKDDRSFLK-NQKFNYVIYDEGHM-LKNRTSERY 544 (941)
T ss_pred eccCcH--HHHHHHHHHHhccCCCccEEEEEeeccc---------CChHHHHHHH-hccccEEEecchhh-hhccchHHH
Confidence 877765 444321 1 2378877753221 22222 3443 33899999999984 3232
Q ss_pred -------CCCceeecCC
Q 002898 142 -------GRNPLLISGE 151 (869)
Q Consensus 142 -------a~tPLiiSg~ 151 (869)
|+.-|.++|.
T Consensus 545 ~~LM~I~An~RlLLTGT 561 (941)
T KOG0389|consen 545 KHLMSINANFRLLLTGT 561 (941)
T ss_pred HHhccccccceEEeeCC
Confidence 5666778874
No 156
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=92.47 E-value=0.42 Score=60.45 Aligned_cols=37 Identities=32% Similarity=0.305 Sum_probs=26.1
Q ss_pred eEEecCCCcHHHHHHHHHH-HHHHcCCc-EEEEecCHHH
Q 002898 19 IAEMKTGEGKTLVSTLAAY-LNALTGEG-VHVVTVNDYL 55 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~-l~AL~G~~-V~VvT~ndyL 55 (869)
..+|.||+|||.|++-.++ |+...|.. +.|++|+...
T Consensus 63 ~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI 101 (986)
T PRK15483 63 DIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAI 101 (986)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 7899999999998765554 45555654 5666666443
No 157
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.41 E-value=0.22 Score=47.01 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=25.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH---cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL---~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
++-=.+|.|||.++.--+.-... ......++..+---...-......+...+|..
T Consensus 8 ~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 65 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP 65 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S
T ss_pred EEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc
Confidence 45567999999765444432211 11133333222211112234466777777765
No 158
>PRK10536 hypothetical protein; Provisional
Probab=92.35 E-value=1.8 Score=47.32 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=39.9
Q ss_pred hHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHH-------------HHHHHHHHHHHHhhhc
Q 002898 7 QIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDY-------------LAQRDAEWMERVHRFL 70 (869)
Q Consensus 7 Ql~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndy-------------LA~RDae~~~~ly~~L 70 (869)
|....-+|.++. ++.=.+|+|||+.+...++ .+| .+.---|+-++.. +.+--..||.|+|+.|
T Consensus 64 Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~-~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L 142 (262)
T PRK10536 64 QAHYLKAIESKQLIFATGEAGCGKTWISAAKAA-EALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVL 142 (262)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH-HHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHH
Confidence 444444566666 5566899999987766664 445 4432223333333 4455567888888877
Q ss_pred CC
Q 002898 71 GL 72 (869)
Q Consensus 71 GL 72 (869)
.-
T Consensus 143 ~~ 144 (262)
T PRK10536 143 VR 144 (262)
T ss_pred HH
Confidence 54
No 159
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.35 E-value=0.38 Score=54.33 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=35.4
Q ss_pred EEecCCCcHHHHHHHHHHHH--HHcCCcEEEEecCHHHHHHHHHHHHHHh
Q 002898 20 AEMKTGEGKTLVSTLAAYLN--ALTGEGVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~--AL~G~~V~VvT~ndyLA~RDae~~~~ly 67 (869)
++=.-|+|||++++-.+... .-.+..+.++|+|.-|..--.+.+..-+
T Consensus 6 I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~ 55 (352)
T PF09848_consen 6 ITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY 55 (352)
T ss_pred EEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc
Confidence 44457999999887776643 4468899999999999886555555443
No 160
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.06 E-value=0.44 Score=54.90 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=38.3
Q ss_pred EEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 20 AEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.-=.||.|||.+++=.|....+ .|+.|+++|.+.|=+. -.+++..+.+.+|+.+.+
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a-a~eQL~~~a~~lgvpv~~ 238 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG-AKKQIQTYGDIMGIPVKA 238 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH-HHHHHHHHhhcCCcceEe
Confidence 3447999999876544432333 4789999999998333 345577777788987653
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=90.69 E-value=1 Score=57.56 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=71.1
Q ss_pred CeEEecCCCcHHHHHHHHHHHH-HHcC-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc--CCC
Q 002898 18 SIAEMKTGEGKTLVSTLAAYLN-ALTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY--RCD 93 (869)
Q Consensus 18 ~IaEm~TGEGKTLva~lpa~l~-AL~G-~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY--~~D 93 (869)
-++.=-||+|||++....|-+. .+.+ ..|.+||==..|-.|-.+.+..+-....... ......+-|+..- ...
T Consensus 276 G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 276 GYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLEDGKGK 352 (962)
T ss_pred eEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhcCCCc
Confidence 3888899999999877766532 2223 4788999999999999999888877665544 2222233333222 247
Q ss_pred eEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 94 ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 94 I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|+++|.--|+. ..+.. ......+ .--++|+||||+-
T Consensus 353 ii~TTIQKf~~--~~~~~---~~~~~~~---~~ivvI~DEaHRS 388 (962)
T COG0610 353 IIVTTIQKFNK--AVKED---ELELLKR---KNVVVIIDEAHRS 388 (962)
T ss_pred EEEEEecccch--hhhcc---cccccCC---CcEEEEEechhhc
Confidence 99999988643 22211 0011233 7788999999994
No 162
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.37 E-value=0.64 Score=57.45 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=78.5
Q ss_pred hhHhhhcCcccccCCCcccHHHHHHHHhCCCeEE--eCCC-CCc-cc-----ccCCC-----eEEe--ChhHHHHHHHHH
Q 002898 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIE--VPTN-LPN-IR-----VDLPI-----QSFA--TARGKWEYARQE 345 (869)
Q Consensus 282 q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~--IPt~-~p~-~R-----~d~~d-----~i~~--t~~~K~~aii~e 345 (869)
+..+...+.+.-++||+.. ...|.+..|++... .++| .|. .+ .+-|+ .-|. +..+-+..+.+.
T Consensus 435 ~~i~~~~~svil~SgTL~p-~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~ 513 (705)
T TIGR00604 435 KPLFERVRSVILASGTLSP-LDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGEL 513 (705)
T ss_pred HHHHHhcCEEEEecccCCc-HHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHH
Confidence 4566777889999999976 33477777775321 2222 121 11 01111 1121 223445566666
Q ss_pred HHHHHh-cCCcEEEEecchhhHHHHHHHHHHCCCC------eEEeecCCcchhhHHHHHH---Hc--CCCccEEEEc--C
Q 002898 346 VESMFR-LGRPVLVGSTSVENSEYLSDLLKQQGIP------HNVLNARPKYAAREAETVA---QA--GRKYAITIST--N 411 (869)
Q Consensus 346 i~~~~~-~grPVLV~t~Si~~SE~ls~~L~~~gi~------~~vLna~~~~~~~Ea~Iia---~A--G~~g~VTIAT--n 411 (869)
|.+..+ ..-.||||++|-..-+.+.+.+...|+- ..++--...-.+.+. ++. ++ ...|+|..|+ .
T Consensus 514 i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~-~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 514 LVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSD-ALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred HHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHH-HHHHHHHHHhcCCceEEEEecCC
Confidence 655433 4567999999999999999888776531 123322111112232 222 11 1257899999 7
Q ss_pred CCcCCccee
Q 002898 412 MAGRGTDII 420 (869)
Q Consensus 412 mAGRGTDIk 420 (869)
-..=|+|+.
T Consensus 593 k~sEGIDf~ 601 (705)
T TIGR00604 593 KVSEGIDFC 601 (705)
T ss_pred cccCccccC
Confidence 889999997
No 163
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=90.23 E-value=2.4 Score=52.01 Aligned_cols=61 Identities=15% Similarity=-0.003 Sum_probs=42.6
Q ss_pred hhhHHHHHHHhCC---CeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Q 002898 5 DVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMER 65 (869)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ 65 (869)
+-|..+....+.. -+++=..|+|||-+.+-.+......|..|.|++|+..-+..-.+.+..
T Consensus 160 ~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 160 ESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4577776665543 278888999999765554443334689999999998777666665543
No 164
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.20 E-value=0.87 Score=53.24 Aligned_cols=150 Identities=23% Similarity=0.278 Sum_probs=91.9
Q ss_pred eEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHh-CCCeE
Q 002898 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF-QMPVI 314 (869)
Q Consensus 236 ~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY-~l~vv 314 (869)
.|+|.|+..-|....-..-+=|.+.+..+-.+ |+.-||.|+- +.-|+..| |.+++
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~rpdL----------------------k~vvmSatl~--a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNRPDL----------------------KLVVMSATLD--AEKFQRYFGNAPLL 216 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhCCCc----------------------eEEEeecccc--hHHHHHHhCCCCee
Confidence 57888886666555443333344444444332 4567888874 55687766 56689
Q ss_pred EeCCCCCcccccCCCeEEeC--hhHHHHHHHHHHHHHHhcCCc--EEEEecchhhHHHHHHHHHHC-------CCCeEEe
Q 002898 315 EVPTNLPNIRVDLPIQSFAT--ARGKWEYARQEVESMFRLGRP--VLVGSTSVENSEYLSDLLKQQ-------GIPHNVL 383 (869)
Q Consensus 315 ~IPt~~p~~R~d~~d~i~~t--~~~K~~aii~ei~~~~~~grP--VLV~t~Si~~SE~ls~~L~~~-------gi~~~vL 383 (869)
.||.-.|+-+ +|.. +.+..+|.++.|.+.|..+-| ||||-...++.|...+.+... +-+..|+
T Consensus 217 ~vpg~~PvEi------~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925|consen 217 AVPGTHPVEI------FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred ecCCCCceEE------EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 9997556543 3433 346678899999998877666 999999998877766665532 2233333
Q ss_pred ecCCcchhh--HHHHHHHcCCCc-cEEEEcCCCcC
Q 002898 384 NARPKYAAR--EAETVAQAGRKY-AITISTNMAGR 415 (869)
Q Consensus 384 na~~~~~~~--Ea~Iia~AG~~g-~VTIATnmAGR 415 (869)
--.|++..+ |..=...-|..| .|.|+||+|-=
T Consensus 291 PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaet 325 (699)
T KOG0925|consen 291 PLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAET 325 (699)
T ss_pred ecCchhhccccCCCCcccCCCccceEEEEecchhe
Confidence 222333333 221122234444 69999999863
No 165
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=89.09 E-value=0.46 Score=60.60 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=78.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHH-HHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE-WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYT 97 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae-~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~Yg 97 (869)
++-..||+|||.+|=++.. +--.-..++=++|+...|..-+. |-+.|-..+|+.+.-..|.. ....++.-..+|..+
T Consensus 1163 ~vga~~gsgkt~~ae~a~l-~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~-s~~lkl~~~~~vii~ 1240 (1674)
T KOG0951|consen 1163 LVGAPNGSGKTACAELALL-RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET-SLDLKLLQKGQVIIS 1240 (1674)
T ss_pred EEecCCCCchhHHHHHHhc-CCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc-ccchHHhhhcceEEe
Confidence 8889999999999887764 32223467889999999987764 56777778899988777654 345667777899999
Q ss_pred CCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 98 T~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|+.. ||.|+ -+| ..++-|+||.|-+
T Consensus 1241 tpe~--~d~lq---------~iQ----~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1241 TPEQ--WDLLQ---------SIQ----QVDLFIVDELHLI 1265 (1674)
T ss_pred chhH--HHHHh---------hhh----hcceEeeehhhhh
Confidence 9987 67773 234 6889999999875
No 166
>PF13245 AAA_19: Part of AAA domain
Probab=88.59 E-value=1.8 Score=38.45 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=33.1
Q ss_pred eEEecCCCcHHH-HHHHHHHHHH-Hc--CCcEEEEecCHHHHHHHHHHH
Q 002898 19 IAEMKTGEGKTL-VSTLAAYLNA-LT--GEGVHVVTVNDYLAQRDAEWM 63 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~A-L~--G~~V~VvT~ndyLA~RDae~~ 63 (869)
+++-.-|+|||. ++-+.+.+.+ .. |+.|.|+|+|...+.+-.+.+
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 458999999994 4444444322 11 889999999999999777776
No 167
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.38 E-value=3.3 Score=48.44 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=53.4
Q ss_pred cCCCcHHHHHH-HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH------hccCCC-
Q 002898 23 KTGEGKTLVST-LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR------SNYRCD- 93 (869)
Q Consensus 23 ~TGEGKTLva~-lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~-rk------~aY~~D- 93 (869)
.+|.|||.+++ |+++ ..-.|+.|.+|+.-.|=+ --.+|++..-+..|+.+-......+|.. .+ ..-.+|
T Consensus 108 ~~GvGKTTtaaKLA~~-l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~Dv 185 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYY-YQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDI 185 (429)
T ss_pred CCCCCHHHHHHHHHHH-HHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCE
Confidence 59999986555 5554 456799999999876654 3446777777888888766555444421 11 112456
Q ss_pred eEEECCCchhhh
Q 002898 94 ITYTNNSELGFD 105 (869)
Q Consensus 94 I~YgT~~e~~fD 105 (869)
|++=|+|+...|
T Consensus 186 ViIDTaGr~~~d 197 (429)
T TIGR01425 186 IIVDTSGRHKQE 197 (429)
T ss_pred EEEECCCCCcch
Confidence 667789987654
No 168
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=88.15 E-value=0.9 Score=57.98 Aligned_cols=117 Identities=22% Similarity=0.271 Sum_probs=73.2
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH--
Q 002898 19 IAEMKTGEGKTLV-STLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR-- 87 (869)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~--------G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk-- 87 (869)
|..=.-|=||||- ..+.|.=+... -.++.|||| ..|+-.=..++..|+-+ |+|....| +|.+|.
T Consensus 998 ILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf~pf--L~v~~yvg--~p~~r~~l 1072 (1549)
T KOG0392|consen 998 ILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKFFPF--LKVLQYVG--PPAERREL 1072 (1549)
T ss_pred eeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHhcch--hhhhhhcC--ChHHHHHH
Confidence 5556779999994 33333222333 135899999 57888888888889888 45544443 344443
Q ss_pred -hcc-CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh-----------cCCCceeecCCC
Q 002898 88 -SNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID-----------EGRNPLLISGEA 152 (869)
Q Consensus 88 -~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD-----------ea~tPLiiSg~~ 152 (869)
..| +++|++..=.. +|+-. +..+.. ..+|||+||-|.|=-- .|.+-||+||.+
T Consensus 1073 R~q~~~~~iiVtSYDv-----~RnD~----d~l~~~---~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTP 1138 (1549)
T KOG0392|consen 1073 RDQYKNANIIVTSYDV-----VRNDV----DYLIKI---DWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTP 1138 (1549)
T ss_pred HhhccccceEEeeHHH-----HHHHH----HHHHhc---ccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCC
Confidence 345 46888665433 44221 123445 8999999999975211 145569999954
No 169
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=87.93 E-value=2 Score=44.57 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=37.5
Q ss_pred hhhHHHHHHHh-CC-C--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHH
Q 002898 5 DVQIIGGAVLH-DG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEW 62 (869)
Q Consensus 5 dvQl~g~~~L~-~G-~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~ 62 (869)
+-|.-+.-.++ .+ + +++=.-|.|||-+....+-...-.|..|.+++||.-.|.+-.+.
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 34666666553 44 2 67789999999754333322233689999999999988874444
No 170
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=87.92 E-value=1.8 Score=54.30 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=69.1
Q ss_pred hhhHHHHHHHhCC---CeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC-
Q 002898 5 DVQIIGGAVLHDG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG- 80 (869)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~- 80 (869)
..|.-|+.-.|.- .++.=.-|+|||-+....+=+....|+.|.+.+.+..=.-...-.+.+ +|+...-+-.+
T Consensus 672 ~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~----~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 672 NDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG----FGIYILRLGSEE 747 (1100)
T ss_pred HHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc----cCcceeecCCcc
Confidence 4577776644422 266666899999876666656678999999988875422222222222 22322111111
Q ss_pred -CCHHHH----------------HhccC-CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcC
Q 002898 81 -MIPEER----------------RSNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (869)
Q Consensus 81 -~~~~~r----------------k~aY~-~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea 142 (869)
.-|+.+ +..|+ ..||-+|---+. ..+..+ |.|+|||||||=.|+.--.
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~------------~plf~~--R~FD~cIiDEASQI~lP~~ 813 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN------------HPLFVN--RQFDYCIIDEASQILLPLC 813 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC------------chhhhc--cccCEEEEccccccccchh
Confidence 012222 23333 356666652221 112222 4999999999999875555
Q ss_pred CCceeec
Q 002898 143 RNPLLIS 149 (869)
Q Consensus 143 ~tPLiiS 149 (869)
--||.+|
T Consensus 814 LgPL~~s 820 (1100)
T KOG1805|consen 814 LGPLSFS 820 (1100)
T ss_pred hhhhhhc
Confidence 5555444
No 171
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=87.88 E-value=0.64 Score=54.93 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=40.0
Q ss_pred hCCC---eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhh
Q 002898 15 HDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRF 69 (869)
Q Consensus 15 ~~G~---IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~ 69 (869)
.+|. +.-=.||+|||.+. +-.+ +=.+++..|+.+|.-||.|=+.+|+.||--
T Consensus 29 ~~g~~~QtLLGvTGSGKTfT~--AnVI-~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 29 ENGLKHQTLLGVTGSGKTFTM--ANVI-AKVQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred hcCceeeEEeeeccCCchhHH--HHHH-HHhCCCeEEEecchhHHHHHHHHHHHhCcC
Confidence 4555 44456999999653 3332 456789999999999999999999999843
No 172
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.73 E-value=1.4 Score=45.99 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=39.4
Q ss_pred cCCCcHHHH-HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002898 23 KTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (869)
Q Consensus 23 ~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~ 81 (869)
.||.|||-+ +=|+++ ..+.|++|-++|.-.|=+- -.++++.+.+.+|+.+.......
T Consensus 9 ptGvGKTTt~aKLAa~-~~~~~~~v~lis~D~~R~g-a~eQL~~~a~~l~vp~~~~~~~~ 66 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAAR-LKLKGKKVALISADTYRIG-AVEQLKTYAEILGVPFYVARTES 66 (196)
T ss_dssp STTSSHHHHHHHHHHH-HHHTT--EEEEEESTSSTH-HHHHHHHHHHHHTEEEEESSTTS
T ss_pred CCCCchHhHHHHHHHH-HhhccccceeecCCCCCcc-HHHHHHHHHHHhccccchhhcch
Confidence 599999975 556665 5666999999997655322 34678889999999987654433
No 173
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=87.52 E-value=1.7 Score=52.10 Aligned_cols=52 Identities=15% Similarity=0.028 Sum_probs=37.1
Q ss_pred hHHHHHHHhCC-C--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHH
Q 002898 7 QIIGGAVLHDG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQR 58 (869)
Q Consensus 7 Ql~g~~~L~~G-~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~R 58 (869)
|--+.-..... . +.+=.-|+|||-+.+..+...-..|++|.|+.|+..=-.-
T Consensus 190 Qk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdN 244 (649)
T KOG1803|consen 190 QKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDN 244 (649)
T ss_pred HHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHH
Confidence 44444444333 2 7777899999999888887556689999999998754333
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.19 E-value=1.9 Score=45.62 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=27.3
Q ss_pred hhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC--cEEEEecC
Q 002898 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVN 52 (869)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~--~V~VvT~n 52 (869)
-|....=+|.+.. ++.-..|+|||+.++-.|+-....|+ .+-++-|+
T Consensus 8 ~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 8 EQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp HHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred HHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3555555666555 77888999999988777753334454 44444443
No 175
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=87.18 E-value=1.4 Score=47.38 Aligned_cols=118 Identities=19% Similarity=0.093 Sum_probs=72.7
Q ss_pred hhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHcC----CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~l~AL~G----~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
+-|.-.+-. .+|. ++...-|+|||.+.+--+.-....+ ..+.|+|.|...|..-.+.+.......+....
T Consensus 3 ~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~---- 77 (315)
T PF00580_consen 3 DEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS---- 77 (315)
T ss_dssp HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT----
T ss_pred HHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc----
Confidence 345444444 4555 8899999999998776654222233 46899999999888777777775554332100
Q ss_pred CCC-HHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 80 GMI-PEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 80 ~~~-~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
.+ .-.........+..+|...|+...|+.+..... - ..++-|+|+.+.
T Consensus 78 -~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-----~---~~~~~i~~~~~~ 126 (315)
T PF00580_consen 78 -DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-----I---DPNFEILDEEEQ 126 (315)
T ss_dssp -T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-----S---HTTTEEECHHHH
T ss_pred -ccccccccccccchheeehhhhhhhhhhhhhhhhhh-----c---cccceeecchhc
Confidence 00 001112234568889999999888877644221 1 346778888774
No 176
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.01 E-value=2.9 Score=45.93 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=36.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
=.||+|||.+++-.|...+-.|+.|.+++..-|=+ ...+++....+..|+.+-
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~-~a~~ql~~~~~~~~i~~~ 131 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA-AAIEQLEEWAKRLGVDVI 131 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH-HHHHHHHHHHHhCCeEEE
Confidence 48999999765555544567889999999765422 224566667777786644
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=85.74 E-value=1.5 Score=54.35 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=24.2
Q ss_pred EEecCCCcHHHHHHHHHH-HHHHcCC-cEEEEecCH
Q 002898 20 AEMKTGEGKTLVSTLAAY-LNALTGE-GVHVVTVND 53 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~-l~AL~G~-~V~VvT~nd 53 (869)
++|.||+|||-+++=.+| |+--.|. .--||.|+.
T Consensus 79 I~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~ 114 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSL 114 (985)
T ss_pred EEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccH
Confidence 799999999999887776 4444564 344555554
No 178
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=85.08 E-value=5.7 Score=46.66 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=37.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.||+|||.+++-.|...+-.|+.|.+|+...|=+ .-.+++..+.+.+|+.+.
T Consensus 103 ~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~-aa~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP-AAYDQLKQLAEKIGVPFY 154 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHHHHHHHcCCcEE
Confidence 6999999876554443455789999999876633 235667777788888754
No 179
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.93 E-value=15 Score=44.15 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=62.0
Q ss_pred CCCcccHHHHHHHHhCCCeE---Ee---CCCCCcccccCCCeEEeChhHHHHHHH---HHHHHHHhcCCcEEEEecchhh
Q 002898 295 TGTAKTEEKEFLKMFQMPVI---EV---PTNLPNIRVDLPIQSFATARGKWEYAR---QEVESMFRLGRPVLVGSTSVEN 365 (869)
Q Consensus 295 TGTa~te~~Ef~~iY~l~vv---~I---Pt~~p~~R~d~~d~i~~t~~~K~~aii---~ei~~~~~~grPVLV~t~Si~~ 365 (869)
+.|.++..+--.+.+|+.-+ .+ ||-..-.-...|...-..+.+|-..|+ ....++...|-.++-||.+-.-
T Consensus 458 ~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~ 537 (1034)
T KOG4150|consen 458 DTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKL 537 (1034)
T ss_pred CCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHH
Confidence 34555544444567777632 22 333222222333333233344433333 3344667889999999999999
Q ss_pred HHHHHHHHH----HCCCCeEE---eecCCcchhhHH-HHHH--HcCCCccEEEEcCCCcCCcce
Q 002898 366 SEYLSDLLK----QQGIPHNV---LNARPKYAAREA-ETVA--QAGRKYAITISTNMAGRGTDI 419 (869)
Q Consensus 366 SE~ls~~L~----~~gi~~~v---Lna~~~~~~~Ea-~Iia--~AG~~g~VTIATnmAGRGTDI 419 (869)
+|.+-..-+ +-| +|-| ..=+-.+.+... .|-. .-|....| ||||-.--|+||
T Consensus 538 CEL~~~~~R~I~~ET~-~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi-IaTNALELGIDI 599 (1034)
T KOG4150|consen 538 CELVLCLTREILAETA-PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI-IATNALELGIDI 599 (1034)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE-Eecchhhhcccc
Confidence 887654332 222 1110 000001212111 2222 34544445 899999999998
No 180
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=84.70 E-value=2.8 Score=52.80 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=76.0
Q ss_pred eEEecCCCcHHHH--HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE-EEcCCCCHHHHHhccCCCeE
Q 002898 19 IAEMKTGEGKTLV--STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG-LIQRGMIPEERRSNYRCDIT 95 (869)
Q Consensus 19 IaEm~TGEGKTLv--a~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~-~i~~~~~~~~rk~aY~~DI~ 95 (869)
++-+.|-.|||-+ +++=..|.--.-.-|.-|.|++.|-.+++..+..-|+.--+.-+ ...+.++.+=+....+|+|.
T Consensus 530 vIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVL 609 (1330)
T KOG0949|consen 530 VIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPWNCQVL 609 (1330)
T ss_pred EEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCchhceEE
Confidence 8889999999986 55555544444445566899999999999988776643333322 24566777666667889999
Q ss_pred EECCCchhhhHHHHhhccch-hhhhccCCCCceEEEeechhhhhh
Q 002898 96 YTNNSELGFDYLRDNLAANS-EQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 96 YgT~~e~~fDyLrD~l~~~~-~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
+.-+.= |...|...| ...... ..+|+|+||||.+=-
T Consensus 610 ITvPec-----leslLlspp~~q~~ce---rIRyiIfDEVH~iG~ 646 (1330)
T KOG0949|consen 610 ITVPEC-----LESLLLSPPHHQKFCE---RIRYIIFDEVHLIGN 646 (1330)
T ss_pred EEchHH-----HHHHhcCchhhhhhhh---cceEEEechhhhccc
Confidence 877753 333333322 122233 689999999998753
No 181
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=84.53 E-value=4.7 Score=49.06 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=47.3
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHH-HHHHHHHHHHcC----CcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG----EGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv-a~lpa~l~AL~G----~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
+-|..++...+.++ ++.=.-|+|||-+ ..+..++..... ..|.+++||--=|.|-.+.++.-...|+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 56877777666666 6777899999964 444444444432 4699999999999998887766554444
No 182
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=84.42 E-value=2.6 Score=51.43 Aligned_cols=68 Identities=26% Similarity=0.230 Sum_probs=51.0
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHH-HHHHHHHHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLV-STLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLv-a~lpa~l~AL~G---~~V~VvT~ndyLA~RDae~~~~ly~~LGL 72 (869)
|-|..++...+.++ |+.=..|.|||-+ ..+.+.+..+.+ ..|.+++||--=|.|-.+.++.....+++
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 68999998877776 7777899999954 444444455542 46889999999999999988776665554
No 183
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=84.40 E-value=0.77 Score=51.14 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=23.6
Q ss_pred hhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh
Q 002898 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (869)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (869)
.|++|++.... ....+.+ ++.++|+||+|+|--|
T Consensus 111 ~fakl~~~~~~-~~~~~~~---~fKiiIlDEcdsmtsd 144 (346)
T KOG0989|consen 111 NFAKLTVLLKR-SDGYPCP---PFKIIILDECDSMTSD 144 (346)
T ss_pred CHHHHhhcccc-ccCCCCC---cceEEEEechhhhhHH
Confidence 47777766542 2234555 8999999999998544
No 184
>PRK04296 thymidine kinase; Provisional
Probab=83.84 E-value=1.1 Score=46.18 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 24 TGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
.|.|||..+.-.+.-.+-.|+.|.++.|
T Consensus 11 ~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred CCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5779997666666544467889998855
No 185
>PRK10867 signal recognition particle protein; Provisional
Probab=83.62 E-value=8.2 Score=45.30 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=51.4
Q ss_pred EEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HH----h--ccC
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RR----S--NYR 91 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~-rk----~--aY~ 91 (869)
.-=.+|+|||.+++-.|+..+.. |+.|.+|+.-.|=+. ..+++..+.+..|+.+-......+|.+ .+ . .-.
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a-a~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~ 183 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA-AIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENG 183 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH-HHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcC
Confidence 33479999997655555444566 999999998765432 235566667788888765433333321 11 1 123
Q ss_pred CC-eEEECCCchhh
Q 002898 92 CD-ITYTNNSELGF 104 (869)
Q Consensus 92 ~D-I~YgT~~e~~f 104 (869)
+| |++=|++++..
T Consensus 184 ~DvVIIDTaGrl~~ 197 (433)
T PRK10867 184 YDVVIVDTAGRLHI 197 (433)
T ss_pred CCEEEEeCCCCccc
Confidence 45 66678887654
No 186
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.45 E-value=2.7 Score=46.22 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=32.6
Q ss_pred cCCCcHHHHHHHHHHHHHHc-C-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 23 KTGEGKTLVSTLAAYLNALT-G-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~-G-~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.||.|||.+++-.+...+.. | +.|.+||.-.|=+.- .+.+..+-+.+|+.+.
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a-~eql~~~~~~~~~p~~ 255 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGA-VEQLKTYAKILGVPVK 255 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhH-HHHHHHHHHHhCCcee
Confidence 59999997655444435565 5 899999987764221 3444444455666553
No 187
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.21 E-value=5.8 Score=45.70 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=43.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cC-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNAL-TG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM 81 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G-~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~ 81 (869)
+.-=.||.|||.++...+....+ .| ..|.++|...|-. -..+++.-+.+.+|+.+..+....
T Consensus 141 ~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~-ga~EqL~~~a~~~gv~~~~~~~~~ 204 (374)
T PRK14722 141 ALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI-GGHEQLRIFGKILGVPVHAVKDGG 204 (374)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc-cHHHHHHHHHHHcCCceEecCCcc
Confidence 34447999999876665553344 36 5899999877732 456778888889999887665443
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.09 E-value=3.8 Score=37.97 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=21.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA 56 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA 56 (869)
+.-=.+|.|||..+-..+....-.+..|..+..+...+
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 55558999999654444432112245565555554443
No 189
>PRK14974 cell division protein FtsY; Provisional
Probab=82.91 E-value=3.2 Score=47.02 Aligned_cols=54 Identities=26% Similarity=0.221 Sum_probs=34.6
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
-=.+|.|||.+..-.+....-.|..|.+++..-|=+ --.+++......+|+.+.
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~-~a~eqL~~~a~~lgv~v~ 199 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA-GAIEQLEEHAERLGVKVI 199 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH-HHHHHHHHHHHHcCCcee
Confidence 346999999765544443345678888887654422 123456667778888765
No 190
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=82.53 E-value=1.5 Score=53.37 Aligned_cols=41 Identities=37% Similarity=0.363 Sum_probs=31.4
Q ss_pred CCchhhHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC
Q 002898 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG 43 (869)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G 43 (869)
.|||+|+-=.- +|-+|+ |-|-.||+||||..+..+. .+|.-
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal-tWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL-TWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH-HHHHH
Confidence 69999975433 566899 7899999999998777764 66643
No 191
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=82.22 E-value=8.3 Score=48.68 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=47.3
Q ss_pred HHhccCC-CeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh------------hhcCCCceeec--C
Q 002898 86 RRSNYRC-DITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL------------IDEGRNPLLIS--G 150 (869)
Q Consensus 86 rk~aY~~-DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL------------iDea~tPLiiS--g 150 (869)
|++.|.. .|+++|+.=+.-|.|...+.- . .+.-+||||||++. -..+..|+|.+ .
T Consensus 1 R~~ly~~ggi~~~T~rIl~~DlL~~ri~~-------~---~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSd 70 (814)
T TIGR00596 1 REKVYLEGGIFSITSRILVVDLLTGIIPP-------E---LITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSD 70 (814)
T ss_pred ChhHhhcCCEEEEechhhHhHHhcCCCCH-------H---HccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecC
Confidence 3456765 899999999988888654432 2 67789999999863 23366777754 2
Q ss_pred CCCCCcccHHHHHHHHHHc
Q 002898 151 EASKDVARYPVAAKVAELL 169 (869)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l 169 (869)
.+..-..-|..+..+.+.|
T Consensus 71 sP~~~~~g~~~l~~vmk~L 89 (814)
T TIGR00596 71 NPEAFTMGFSPLETKMRNL 89 (814)
T ss_pred CCcccccchHHHHHHHHHh
Confidence 2222222344566666555
No 192
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=81.90 E-value=3 Score=41.80 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=25.4
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+.=.+|.|||..+.--++-.+..|.+|..+|..+
T Consensus 4 i~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3446899999877666655667899999998743
No 193
>COG4889 Predicted helicase [General function prediction only]
Probab=81.34 E-value=7 Score=48.98 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=44.4
Q ss_pred CCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 16 DGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 16 ~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
.|++ -|.-|.|||.+++=.+ .||....+..+.|+=.|-.|-..+... =..|.++...++++
T Consensus 182 RGkL-IMAcGTGKTfTsLkis--Eala~~~iL~LvPSIsLLsQTlrew~~-~~~l~~~a~aVcSD 242 (1518)
T COG4889 182 RGKL-IMACGTGKTFTSLKIS--EALAAARILFLVPSISLLSQTLREWTA-QKELDFRASAVCSD 242 (1518)
T ss_pred CCcE-EEecCCCccchHHHHH--HHHhhhheEeecchHHHHHHHHHHHhh-ccCccceeEEEecC
Confidence 3554 4899999999876555 577779999999999888776554432 23566777777775
No 194
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=81.03 E-value=2.8 Score=42.59 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=22.1
Q ss_pred eEEecC--CCcHHHHHHHHHHHHHHcCCcEEE---EecC
Q 002898 19 IAEMKT--GEGKTLVSTLAAYLNALTGEGVHV---VTVN 52 (869)
Q Consensus 19 IaEm~T--GEGKTLva~lpa~l~AL~G~~V~V---vT~n 52 (869)
++++-| |-|||-+|+--++-.+-.|.+|.+ +...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~ 42 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC
Confidence 344544 556776665555556678999988 6654
No 195
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=80.78 E-value=5.7 Score=41.63 Aligned_cols=31 Identities=39% Similarity=0.420 Sum_probs=22.3
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHH-cCCcEEEE
Q 002898 19 IAEMKTGEGKTL-VSTLAAYLNAL-TGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL-~G~~V~Vv 49 (869)
+.++-||.||-- +++|-.++.|+ .|.+|.||
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vv 62 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVV 62 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEE
Confidence 778889988743 45555556777 57888876
No 196
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=80.53 E-value=7.7 Score=37.11 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=24.9
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHH
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~ 57 (869)
=.+|.|||..+...+...+-.|..|.++.....+..
T Consensus 6 G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 6 GPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 358999998766665545557888888777555443
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.00 E-value=1.6 Score=39.97 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=22.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCC--cEEEEecCHHHHH
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQ 57 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~--~V~VvT~ndyLA~ 57 (869)
..=.+|.|||.++...+. .+... .|..++.+.....
T Consensus 7 l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 7 IVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred EECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEcccc
Confidence 344699999987766554 33333 5777776654433
No 198
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=79.96 E-value=13 Score=43.66 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=50.3
Q ss_pred EEecCCCcHHHHHHHHH-HHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-----HHh--ccC
Q 002898 20 AEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-----RRS--NYR 91 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa-~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~-----rk~--aY~ 91 (869)
.-=.+|+|||.+++-.| ++..-.|+.|.+|+.-.|=+. -.+++.......|+.+-......+|.+ .+. .-.
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~ 182 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENG 182 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcC
Confidence 44469999998655544 433347999999988755322 234455556778888665444344421 111 123
Q ss_pred CC-eEEECCCchhh
Q 002898 92 CD-ITYTNNSELGF 104 (869)
Q Consensus 92 ~D-I~YgT~~e~~f 104 (869)
+| |++=|+++...
T Consensus 183 ~DvVIIDTaGr~~~ 196 (428)
T TIGR00959 183 FDVVIVDTAGRLQI 196 (428)
T ss_pred CCEEEEeCCCcccc
Confidence 45 77788887654
No 199
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=79.90 E-value=9.3 Score=46.64 Aligned_cols=70 Identities=21% Similarity=0.129 Sum_probs=48.1
Q ss_pred hhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 6 VQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 6 vQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
-|.-|.-..++.- |.|=.-|.|||.|.+-.+|-.+= .+.+|.|+.|+..---+-+|.+. ..||+|.-+..
T Consensus 414 SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh----~tgLKVvRl~a 486 (935)
T KOG1802|consen 414 SQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH----KTGLKVVRLCA 486 (935)
T ss_pred HHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH----hcCceEeeeeh
Confidence 3666666666655 88889999999998777774443 44579999998665554444433 35788776543
No 200
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=79.70 E-value=9.2 Score=43.03 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=31.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.+|+|||.++.-.|...+..|+.|.+++..-|=+ ...+++.......|+.+
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~-~a~eql~~~a~~~~i~~ 172 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA-AAIEQLQVWGERVGVPV 172 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch-hhHHHHHHHHHHcCceE
Confidence 7999999765555555677899999998754311 12233444444556554
No 201
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=79.63 E-value=17 Score=45.27 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-HHHHhcCC--cEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCc-cEEEEcC
Q 002898 337 GKWEYARQEV-ESMFRLGR--PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY-AITISTN 411 (869)
Q Consensus 337 ~K~~aii~ei-~~~~~~gr--PVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g-~VTIATn 411 (869)
.|...+.+.+ ......|. +||||+......+.+...|...++++..+++.+....+...|-. .++... ...++|-
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6777766666 56678898 99999999999999999999999889999996433344333333 555222 3444444
Q ss_pred CCcCC
Q 002898 412 MAGRG 416 (869)
Q Consensus 412 mAGRG 416 (869)
-+|-|
T Consensus 772 agg~g 776 (866)
T COG0553 772 AGGLG 776 (866)
T ss_pred ccccc
Confidence 44443
No 202
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=79.18 E-value=4.3 Score=42.10 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=21.2
Q ss_pred eEEecCCCcHH-HHHHHHHHHHHH-cCCcEEEE
Q 002898 19 IAEMKTGEGKT-LVSTLAAYLNAL-TGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKT-Lva~lpa~l~AL-~G~~V~Vv 49 (869)
++++-||.||- -+|+|-.++.|+ .|.+|.|+
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~ii 55 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEE
Confidence 67888888873 245555555665 68888876
No 203
>PRK08727 hypothetical protein; Validated
Probab=78.52 E-value=7.5 Score=41.44 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=18.9
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~V~VvT~ 51 (869)
+.-=.||.|||. +-++... ..-.|..|..++.
T Consensus 45 ~l~G~~G~GKThL~~a~~~~-~~~~~~~~~y~~~ 77 (233)
T PRK08727 45 YLSGPAGTGKTHLALALCAA-AEQAGRSSAYLPL 77 (233)
T ss_pred EEECCCCCCHHHHHHHHHHH-HHHcCCcEEEEeH
Confidence 555679999995 4433332 2234666666664
No 204
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=78.14 E-value=4.5 Score=41.71 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=19.0
Q ss_pred eEEecCC--CcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTG--EGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TG--EGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
+.++-|| -|||-+++--++-.+-.|.+|.|+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4555555 456665555554455678899776
No 205
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=77.68 E-value=3.3 Score=50.97 Aligned_cols=47 Identities=21% Similarity=0.088 Sum_probs=37.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhh
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~ 68 (869)
+..-.||+|||++.+- . .+-.++++.|||+|..+|.+-+.++..||.
T Consensus 33 ~l~Gvtgs~kt~~~a~--~-~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 33 TLLGVTGSGKTFTMAN--V-IAQVNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred EEECCCCcHHHHHHHH--H-HHHhCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 6667799999987553 2 233578999999999999999999888764
No 206
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=77.43 E-value=3.6 Score=52.19 Aligned_cols=115 Identities=24% Similarity=0.402 Sum_probs=80.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc---CCcEEEEecCHHHHHHH-HHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRD-AEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~---G~~V~VvT~ndyLA~RD-ae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI 94 (869)
++-..||.|||++|-++.. .++. |..|-+++|-..|-+-- ..|=..++.. |+++.-..++..++ -+..-.++|
T Consensus 947 ~~g~ptgsgkt~~ae~a~~-~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd-~~~v~~~~~ 1023 (1230)
T KOG0952|consen 947 LLGAPTGSGKTVVAELAIF-RALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPD-VKAVREADI 1023 (1230)
T ss_pred hhcCCccCcchhHHHHHHH-HHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCC-hhheecCce
Confidence 5567899999999999886 6764 57899999988887644 4444555555 99999888887665 344556899
Q ss_pred EEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCce
Q 002898 95 TYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPL 146 (869)
Q Consensus 95 ~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPL 146 (869)
+..|+... ++.-|.. ...+.|+ .+...++||.+.. -+.|-|.
T Consensus 1024 ~ittpek~-dgi~Rsw---~~r~~v~----~v~~iv~de~hll--g~~rgPV 1065 (1230)
T KOG0952|consen 1024 VITTPEKW-DGISRSW---QTRKYVQ----SVSLIVLDEIHLL--GEDRGPV 1065 (1230)
T ss_pred EEcccccc-cCccccc---cchhhhc----cccceeecccccc--cCCCcce
Confidence 99999774 2222211 1123455 6888999998874 5556673
No 207
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.23 E-value=3.7 Score=47.04 Aligned_cols=90 Identities=23% Similarity=0.196 Sum_probs=47.6
Q ss_pred eEEecCCCcHHHHHHHHH--HHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEE
Q 002898 19 IAEMKTGEGKTLVSTLAA--YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITY 96 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa--~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~Y 96 (869)
++-=.||.|||.+.-..+ +-.+..+.. ++..|-.--.--..-+..++..+| .....
T Consensus 46 ~iyG~~GTGKT~~~~~v~~~l~~~~~~~~--~~yINc~~~~t~~~i~~~i~~~~~---~~p~~----------------- 103 (366)
T COG1474 46 IIYGPTGTGKTATVKFVMEELEESSANVE--VVYINCLELRTPYQVLSKILNKLG---KVPLT----------------- 103 (366)
T ss_pred EEECCCCCCHhHHHHHHHHHHHhhhccCc--eEEEeeeeCCCHHHHHHHHHHHcC---CCCCC-----------------
Confidence 667789999998754443 322323332 333333222222344556666666 11111
Q ss_pred ECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhh
Q 002898 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 97 gT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
|.+..=.+..|.+++.. .. +.-++|+||+|.++-
T Consensus 104 g~~~~~~~~~l~~~~~~------~~---~~~IvvLDEid~L~~ 137 (366)
T COG1474 104 GDSSLEILKRLYDNLSK------KG---KTVIVILDEVDALVD 137 (366)
T ss_pred CCchHHHHHHHHHHHHh------cC---CeEEEEEcchhhhcc
Confidence 22222224455555432 23 778999999999863
No 208
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=77.10 E-value=4.2 Score=46.55 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=63.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcC-CcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTG-EGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G-~~V~VvT~---ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI 94 (869)
++.-..|+|||-++++-+++.++.. .+.++++. ...|..=-..++......+|+.........+. .|
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---------~i 75 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---------EI 75 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---------EE
Confidence 5566789999998887777777774 44544432 23366666777888888889875443322211 36
Q ss_pred EEE-CCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 95 TYT-NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 95 ~Yg-T~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
++. |.+.+-|--++|+ ++.. +....++++.+||++.+
T Consensus 76 ~~~~~g~~i~f~g~~d~----~~~i--k~~~~~~~~~idEa~~~ 113 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDK----PNKL--KSGAGIAIIWFEEASQL 113 (396)
T ss_pred EecCCCeEEEeecccCC----hhHh--hCcceeeeehhhhhhhc
Confidence 663 4556555444322 1111 11125789999999865
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=76.85 E-value=6.1 Score=45.80 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=50.1
Q ss_pred cCCCcHHHHHHHHHHHHH-HcC-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc-CCC-eEEEC
Q 002898 23 KTGEGKTLVSTLAAYLNA-LTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY-RCD-ITYTN 98 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~A-L~G-~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY-~~D-I~YgT 98 (869)
.||-|||-+.+=.|+..+ +.| +.|-+||.--| -.=-.|++.-+.+.||+.+.++.+.-+-++-...+ .|| |.+=|
T Consensus 211 PTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY-RIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDT 289 (407)
T COG1419 211 PTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY-RIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDT 289 (407)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc-hhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeC
Confidence 699999987554444455 444 57999998766 22235778888899999999887543322222222 355 44555
Q ss_pred CCc
Q 002898 99 NSE 101 (869)
Q Consensus 99 ~~e 101 (869)
.|+
T Consensus 290 aGr 292 (407)
T COG1419 290 AGR 292 (407)
T ss_pred CCC
Confidence 555
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.63 E-value=13 Score=44.41 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=48.8
Q ss_pred cCCCcHHHHHHHHHHHHHH-cC-CcEEEEecCHH-HHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HHhccCC-CeEEE
Q 002898 23 KTGEGKTLVSTLAAYLNAL-TG-EGVHVVTVNDY-LAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RRSNYRC-DITYT 97 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL-~G-~~V~VvT~ndy-LA~RDae~~~~ly~~LGLsv~~i~~~~~~~~-rk~aY~~-DI~Yg 97 (869)
.||.|||.++...+....+ .| +.|.+|+...| ++- .+.+.-+.+.+|+.+.......+... ....-.. .|.+-
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA--~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLID 341 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGG--HEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLID 341 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhH--HHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeC
Confidence 6999999876666654444 45 47988887654 222 35566667888888765544333221 2222223 46777
Q ss_pred CCCchhhh
Q 002898 98 NNSELGFD 105 (869)
Q Consensus 98 T~~e~~fD 105 (869)
|.|....|
T Consensus 342 TaGr~~~d 349 (484)
T PRK06995 342 TIGMSQRD 349 (484)
T ss_pred CCCcChhh
Confidence 88765444
No 211
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=75.46 E-value=20 Score=38.53 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=56.8
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc--CCCCHHHHHh
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ--RGMIPEERRS 88 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~--~~~~~~~rk~ 88 (869)
+..|. +.--.||.|||..+.--++-.+.. |..|..++.-. -..+-...+... ..|+...... ...+.++-..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~ 103 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQ--YAGKRLHLPDTVFIYTLEEFDA 103 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHH--HhCCCcccCCccccccHHHHHH
Confidence 34555 566779999997555444434566 88888887632 122222222222 2244332211 1122222111
Q ss_pred ---ccC-CC--eEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 89 ---NYR-CD--ITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 89 ---aY~-~D--I~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.+. .+ ++|-+.+.+..+.+.+.+..- .... +.+++|||.+..+.
T Consensus 104 ~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~---~~~~---~~~~vvID~l~~l~ 153 (271)
T cd01122 104 AFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM---AVSH---GIQHIIIDNLSIMV 153 (271)
T ss_pred HHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH---HhcC---CceEEEECCHHHHh
Confidence 111 11 334344444455555544311 1123 68899999988874
No 212
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=74.58 E-value=13 Score=46.35 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=42.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~--~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
++-..=|=|||.++.+.++..+=.+. .+.|..|+.+=.+--++-...-+++||.+-.+..
T Consensus 235 vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~ 296 (758)
T COG1444 235 VLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAP 296 (758)
T ss_pred EEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcccccc
Confidence 77788899999999887764443333 5666667766666666667777889998866543
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.50 E-value=11 Score=44.15 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=34.5
Q ss_pred cCCCcHHHHHHHHHHHHH-H-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 23 KTGEGKTLVSTLAAYLNA-L-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~A-L-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.||.|||.+++-.|+..+ + .|+.|.+||...|=+.- .+++....+.+|+.+-.
T Consensus 229 ptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a-~eqL~~~a~~~~vp~~~ 283 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGA-VEQLKTYAKIMGIPVEV 283 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHH-HHHHHHHHHHhCCceEc
Confidence 499999976554444344 4 46899999998763211 24555556677877643
No 214
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=74.34 E-value=15 Score=36.69 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=31.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
=.+|+|||.++...+...+-.|..|.++....+ -....+.+......+|+.+
T Consensus 7 G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~-~~~~~~~l~~~~~~~~~~~ 58 (173)
T cd03115 7 GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY-RPAAIEQLRVLGEQVGVPV 58 (173)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC-ChHHHHHHHHhcccCCeEE
Confidence 358999998766555544556888888775443 2223344555555566554
No 215
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.27 E-value=3.1 Score=49.98 Aligned_cols=113 Identities=24% Similarity=0.230 Sum_probs=55.7
Q ss_pred EEecCCCcHHHH-HHHHHHHHHHcCCc--EEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHh-cc-----
Q 002898 20 AEMKTGEGKTLV-STLAAYLNALTGEG--VHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRS-NY----- 90 (869)
Q Consensus 20 aEm~TGEGKTLv-a~lpa~l~AL~G~~--V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~-aY----- 90 (869)
-+|+||+|||++ |+|..+ .--.|-+ ...|-.+..|-+-.-.-.-++....=.+-...+++...+.|+- .+
T Consensus 2 f~matgsgkt~~ma~lil~-~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILE-CYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccccCCChhhHHHHHHHH-HHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 479999999997 444443 2345644 3455556666665443333332211122222222222222221 11
Q ss_pred CCCeEEECCCchhhhHHHHhhcc-chhhhhccCCCCceEEEeechhhh
Q 002898 91 RCDITYTNNSELGFDYLRDNLAA-NSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 91 ~~DI~YgT~~e~~fDyLrD~l~~-~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
+..|.++|.-.+-.|+.|..=.. ..++.- . .--+.|-||+|.+
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~-~---~klvfl~deahhl 124 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLK-D---QKLVFLADEAHHL 124 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHh-h---CceEEEechhhhh
Confidence 23689999887766665542111 111111 1 2235677999986
No 216
>PRK05973 replicative DNA helicase; Provisional
Probab=73.85 E-value=21 Score=38.58 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=29.1
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
..|. ++--.+|.|||+.++--++-.|..|.+|.++|.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 4565 677789999999887777656678999988875
No 217
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=73.45 E-value=0.87 Score=52.41 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHH
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAY 37 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~ 37 (869)
-|.|||.-+++.++.|- +.-..||+|||=+|.+|++
T Consensus 24 lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpil 61 (725)
T KOG0349|consen 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 61 (725)
T ss_pred cccccccccccEEecCCcEEEEeccCCCCccceehhhH
Confidence 48999999999888765 7778899999999999986
No 218
>PRK08084 DNA replication initiation factor; Provisional
Probab=73.42 E-value=11 Score=40.35 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=21.6
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~V~VvT~nd 53 (869)
+.-=.+|.|||. +.++...+. -.|..|..++.++
T Consensus 49 ~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~~~~ 83 (235)
T PRK08084 49 YLWSREGAGRSHLLHAACAELS-QRGRAVGYVPLDK 83 (235)
T ss_pred EEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEEHHH
Confidence 455579999995 444444433 2477787777754
No 219
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=72.55 E-value=16 Score=48.44 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=70.1
Q ss_pred chhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCC---cEEEEecCHHHHHHHHHHHHHHh-hhcCCeEEEEcC
Q 002898 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQRDAEWMERVH-RFLGLSVGLIQR 79 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~---~V~VvT~ndyLA~RDae~~~~ly-~~LGLsv~~i~~ 79 (869)
.+-|.-++-.-...-++...-|+|||.+.+--+.-..+.|. .+.|||.|+--|.--.+.++.-. +.+.- .+
T Consensus 3 t~~Q~~ai~~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~-----~p 77 (1232)
T TIGR02785 3 TDEQWQAIYTRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ-----EP 77 (1232)
T ss_pred CHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-----Cc
Confidence 35566666543333489999999999988776654445564 48999999987753333332221 11110 01
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
....-.++...-.....+|...|+...||.+... ..+ +.+|-|.||.+.
T Consensus 78 ~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~----l~l----dP~F~i~de~e~ 126 (1232)
T TIGR02785 78 NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYL----LDL----DPSFRILTDTEQ 126 (1232)
T ss_pred hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhh----cCC----CCCceeCCHHHH
Confidence 1111112222223455699999999999886432 122 335567898876
No 220
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=71.52 E-value=11 Score=37.25 Aligned_cols=71 Identities=27% Similarity=0.395 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCC-
Q 002898 339 WEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMA- 413 (869)
Q Consensus 339 ~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~----gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmA- 413 (869)
...++..+.+..++|+.|+|.|.+.+.++.|.+.|-.. -|||...+..+ . + .-.|.|+++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---~--------~--~~PV~i~~~~~~ 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPP---A--------A--RQPVLITWDQEA 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SS---T--------T----SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCC---C--------C--CCeEEEecCccc
Confidence 47788999999999999999999999999999999654 58998754421 1 1 13799999883
Q ss_pred --cCCcceecC
Q 002898 414 --GRGTDIILG 422 (869)
Q Consensus 414 --GRGTDIkLg 422 (869)
.-+.|+-+.
T Consensus 82 ~~~~~~~vLin 92 (137)
T PF04364_consen 82 NPNNHADVLIN 92 (137)
T ss_dssp ---S--SEEEE
T ss_pred CCCCCCCEEEE
Confidence 333565543
No 221
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.43 E-value=7.7 Score=44.96 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=37.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.||.|||.+++-.+....-.|+.|.+||.-.|=+. -.+++....+.+|+.+-.
T Consensus 214 ptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~g-AveQLk~yae~lgvpv~~ 266 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSG-AVEQFQGYADKLDVELIV 266 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCcc-HHHHHHHHhhcCCCCEEe
Confidence 48999996544444434567999999999877221 155777788888887654
No 222
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.32 E-value=15 Score=42.93 Aligned_cols=79 Identities=19% Similarity=0.109 Sum_probs=46.7
Q ss_pred cCCCcHHHHHHHHHHHHH-H-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHH-HHhccCCC-eEEEC
Q 002898 23 KTGEGKTLVSTLAAYLNA-L-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEE-RRSNYRCD-ITYTN 98 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~A-L-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~-rk~aY~~D-I~YgT 98 (869)
.||.|||.+....+.... . .+..|.++|.+.|-. --.+++..+.+.+|+.+..+....+... ....-.+| |..-|
T Consensus 199 pnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri-galEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d~VLIDT 277 (420)
T PRK14721 199 PTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI-GGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHMVLIDT 277 (420)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch-hHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCCEEEecC
Confidence 699999876554443222 2 346889999888765 3355677777889999876654332211 11222344 55556
Q ss_pred CCch
Q 002898 99 NSEL 102 (869)
Q Consensus 99 ~~e~ 102 (869)
.|..
T Consensus 278 aGrs 281 (420)
T PRK14721 278 VGMS 281 (420)
T ss_pred CCCC
Confidence 6544
No 223
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=70.11 E-value=6.4 Score=39.49 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=25.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|+-.+-|.|||.+++..|...|..|++|.++-..
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 4456789999987776666667799999998774
No 224
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.67 E-value=3.4 Score=44.76 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=27.7
Q ss_pred hhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcC
Q 002898 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEG 142 (869)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea 142 (869)
|.|..|..+..-....|.-.|..+.++|+||||||- +.|
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-~gA 129 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-AGA 129 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-hHH
Confidence 567788877654444555445579999999999993 554
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.55 E-value=20 Score=42.00 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=36.7
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
.||.|||.+++..|...+-.|+.|.+++...|=+. ..+++....+.+|+.+...
T Consensus 249 ptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria-AvEQLk~yae~lgipv~v~ 302 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKTIGFEVIAV 302 (436)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHhhhcCCcEEec
Confidence 49999997655555444567889999998766421 3345555666788887654
No 226
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=67.69 E-value=27 Score=41.32 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=40.0
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhh
Q 002898 19 IAEMKTGEGKTL-VSTLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRF 69 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G---~~V~VvT~ndyLA~RDae~~~~ly~~ 69 (869)
+++|.=|-|||. ++++.+|...+.| ..|.++.++..-|+.-+..+..+.+.
T Consensus 26 ~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 26 YLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred EEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 789999999986 5666666554543 56888999999999988888877765
No 227
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=67.43 E-value=6.8 Score=39.20 Aligned_cols=31 Identities=29% Similarity=0.212 Sum_probs=24.9
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
--+=|+|||.+++-.|+..|-.|++|++|=-
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~ 36 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDA 36 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeC
Confidence 3467999999877777777888999999854
No 228
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=67.08 E-value=17 Score=38.53 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=30.4
Q ss_pred CceEEEeechhhhhhhc---------------CCCceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeC
Q 002898 125 PFHFAIVDEVDSVLIDE---------------GRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVEL 179 (869)
Q Consensus 125 ~~~~aIVDEvDsiLiDe---------------a~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~ 179 (869)
..++++||.+|.+--.. ...++|+|+...... +-..-.++...|..+..+.+.+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~-l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE-LSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT-TTTS-HHHHHHHHCSEEEEE--
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc-ccccChhhhhhHhhcchhhcCC
Confidence 78888888888753221 345788887543322 1112345677776666666654
No 229
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=65.38 E-value=12 Score=38.62 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=18.3
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHH-cCCcEEEEe
Q 002898 19 IAEMKTGEGKTL-VSTLAAYLNAL-TGEGVHVVT 50 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL-~G~~V~VvT 50 (869)
++++-||.||-- +|+|-.++.|+ .|.+|.|+=
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQ 38 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQ 38 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 567778777632 35555555665 688898873
No 230
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=65.27 E-value=6.8 Score=42.19 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=25.1
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|.|.|||-+++-.|+..|..|++|.||=-.
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 799999998777777788999999988553
No 231
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=65.24 E-value=17 Score=44.90 Aligned_cols=65 Identities=20% Similarity=0.023 Sum_probs=47.7
Q ss_pred CCCchhhHHHHHHHh----CC---CeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhh
Q 002898 1 MRHFDVQIIGGAVLH----DG---SIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~----~G---~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~ 68 (869)
+.|..-|.-+.-.+. +| .++.-.||+|||++++- + ..-.++.+.|||+|..+|.+-++++..++.
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~--l-~~~~~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN--V-IARLQRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH--H-HHHhCCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 356777776666553 33 37778899999987542 2 233578999999999999998888877753
No 232
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=64.89 E-value=7.5 Score=41.88 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=24.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
|+ .|-|.|||-+++-.|+..|..|+.|.||=
T Consensus 7 v~-~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 7 VY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred EE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45 38999999876666666788999998884
No 233
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=63.83 E-value=15 Score=36.98 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=58.3
Q ss_pred eEEeChhHHHH-HHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEeecCCcchhhHHHHHHHcCCCc
Q 002898 330 QSFATARGKWE-YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVAQAGRKY 404 (869)
Q Consensus 330 ~i~~t~~~K~~-aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~----~gi~~~vLna~~~~~~~Ea~Iia~AG~~g 404 (869)
.+|...+++.. +++..+.++...|.+|||-|.|.+..+.|-+.|-. .-|||+.--. + ..+++|
T Consensus 5 ~FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e-------~----~~~~qP- 72 (144)
T COG2927 5 TFYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGE-------P----PPAGQP- 72 (144)
T ss_pred EEEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCC-------C----CCCCCC-
Confidence 34555566665 78899999999999999999999999999999944 4688865321 0 134555
Q ss_pred cEEEEc---CCCcCCcceecCC
Q 002898 405 AITIST---NMAGRGTDIILGG 423 (869)
Q Consensus 405 ~VTIAT---nmAGRGTDIkLgg 423 (869)
|.|++ |-.++=.|+.+++
T Consensus 73 -Ili~~~~~~pn~~~~~~lInl 93 (144)
T COG2927 73 -ILIAWPGGNPNSARVDLLINL 93 (144)
T ss_pred -EEEEcCCCCCCCCceeEEEec
Confidence 88876 4455555666654
No 234
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=63.78 E-value=14 Score=47.68 Aligned_cols=97 Identities=21% Similarity=0.355 Sum_probs=0.0
Q ss_pred CCcHHH-HHHHHHHHHHHcCC--cEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCCCC-HHHHHhccCC----CeE
Q 002898 25 GEGKTL-VSTLAAYLNALTGE--GVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMI-PEERRSNYRC----DIT 95 (869)
Q Consensus 25 GEGKTL-va~lpa~l~AL~G~--~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv~~i~~~~~-~~~rk~aY~~----DI~ 95 (869)
|=|||+ +..|.|+|.+=.|. .-.||.++..+-. |=-.|-+|. |+++-..+|... ..+||+-+.. +|.
T Consensus 644 GLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn----WEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVC 719 (1958)
T KOG0391|consen 644 GLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN----WEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVC 719 (1958)
T ss_pred cccchhHHHHHHHHHHhcccCCCCceEEeechhhhh----hhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEe
Q ss_pred EECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 96 YTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 96 YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
+.+-.-+ ++|.-+ ...+ .-.|+|+||++.|
T Consensus 720 ItSYklv----~qd~~A-----Fkrk---rWqyLvLDEaqnI 749 (1958)
T KOG0391|consen 720 ITSYKLV----FQDLTA-----FKRK---RWQYLVLDEAQNI 749 (1958)
T ss_pred ehhhHHH----HhHHHH-----HHhh---ccceeehhhhhhh
No 235
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=63.56 E-value=3.6e+02 Score=33.17 Aligned_cols=105 Identities=20% Similarity=0.129 Sum_probs=67.8
Q ss_pred chhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcC-----CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G-----~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
-+-|..++.......++-..-|+|||-|.+--+. +-+.. ..+.+||-+.--|..--+. +-..+|..
T Consensus 4 n~~Q~~av~~~~gp~lV~AGaGsGKT~vlt~Ria-~li~~~~v~p~~Il~vTFTnkAA~em~~R---l~~~~~~~----- 74 (655)
T COG0210 4 NPEQREAVLHPDGPLLVLAGAGSGKTRVLTERIA-YLIAAGGVDPEQILAITFTNKAAAEMRER---LLKLLGLP----- 74 (655)
T ss_pred CHHHHHHHhcCCCCeEEEECCCCCchhhHHHHHH-HHHHcCCcChHHeeeeechHHHHHHHHHH---HHHHhCcc-----
Confidence 3556666666645558888999999987665554 22322 2689999999999833333 34444431
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
. ...+.++|...|+...||+..... . - +-+|-|+|+-|.
T Consensus 75 -~----------~~~~~v~TfHs~~~~~lr~~~~~~----~-~---~~~~~i~d~~d~ 113 (655)
T COG0210 75 -A----------AEGLTVGTFHSFALRILRRHGERL----G-L---NANFTILDSDDQ 113 (655)
T ss_pred -c----------ccCcEEeeHHHHHHHHHHHHHHhc----C-C---CCCCEEecHHHH
Confidence 0 011889999999999998765432 1 1 456677777664
No 236
>PHA02533 17 large terminase protein; Provisional
Probab=63.34 E-value=40 Score=40.76 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=46.3
Q ss_pred CchhhHHHHHHHhCCC--eEEecCCCcHHHHHH-HHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002898 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVST-LAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~-lpa~l~AL~--G~~V~VvT~ndyLA~RDae~~~~ly~~L 70 (869)
+.|-|.--.-.++.++ ++.+.=.-|||.+++ +.++ .++. |..|.++.++..-|+--++.+..+++.+
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~-~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLH-YVCFNKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHH-HHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4456654333344455 888888999997654 5555 3443 4578889999999999888888777654
No 237
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=62.59 E-value=27 Score=42.90 Aligned_cols=104 Identities=25% Similarity=0.289 Sum_probs=65.9
Q ss_pred hhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc--C---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT--G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~l~AL~--G---~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
|-|.-++- -..|. ++-..-|+|||.+.+--+. ..+. | ..+.+||.++.-|..--+. +.+.+|-..
T Consensus 4 ~~Q~~av~-~~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~~~~p~~IL~vTFt~~Aa~em~~R---l~~~l~~~~---- 74 (664)
T TIGR01074 4 PQQQEAVE-YVTGPCLVLAGAGSGKTRVITNKIA-YLIQNCGYKARNIAAVTFTNKAAREMKER---VAKTLGKGE---- 74 (664)
T ss_pred HHHHHHHh-CCCCCEEEEecCCCCHHHHHHHHHH-HHHHhcCCCHHHeEEEeccHHHHHHHHHH---HHHHhCccc----
Confidence 45655432 23466 7888899999987666554 2232 3 4689999999888743333 444454210
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
...|..+|...|++..|+..... ... ...|-|+|+.+..
T Consensus 75 ------------~~~v~v~TfHs~a~~il~~~~~~----~g~----~~~~~il~~~~~~ 113 (664)
T TIGR01074 75 ------------ARGLTISTFHTLGLDIIKREYNA----LGY----KSNFSLFDETDQL 113 (664)
T ss_pred ------------cCCeEEEeHHHHHHHHHHHHHHH----hCC----CCCCEEeCHHHHH
Confidence 13588999999999999874221 001 2346688988754
No 238
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=62.18 E-value=21 Score=44.73 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=37.9
Q ss_pred hhhHHHHHHHhCC-C--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHH
Q 002898 5 DVQIIGGAVLHDG-S--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60 (869)
Q Consensus 5 dvQl~g~~~L~~G-~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDa 60 (869)
+-|.-++-.+..+ + ++.=..|+|||.+.-....+....|..|.+++|+---|++-.
T Consensus 355 ~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 355 EEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence 4566666655553 4 777789999986533333223346999999999988777644
No 239
>PRK11054 helD DNA helicase IV; Provisional
Probab=61.87 E-value=24 Score=43.95 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=56.5
Q ss_pred hhhHHHHHHHhCCCeEEecCCCcHHHHHHHH-HHHHH---HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 5 DVQIIGGAVLHDGSIAEMKTGEGKTLVSTLA-AYLNA---LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 5 dvQl~g~~~L~~G~IaEm~TGEGKTLva~lp-a~l~A---L~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
+-|-.++..-....++...-|+|||.|.+-- +||.. ..+..+.++|.|+-.|..-.+. +-..+|.
T Consensus 199 ~~Q~~av~~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eR---L~~~lg~-------- 267 (684)
T PRK11054 199 PSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDER---IRERLGT-------- 267 (684)
T ss_pred HHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHH---HHHhcCC--------
Confidence 4455555433334488999999999876544 44321 1245899999999999754444 3344551
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHh
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDN 110 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~ 110 (869)
.+|..+|...|++..|++.
T Consensus 268 -----------~~v~v~TFHSlal~Il~~~ 286 (684)
T PRK11054 268 -----------EDITARTFHALALHIIQQG 286 (684)
T ss_pred -----------CCcEEEeHHHHHHHHHHHh
Confidence 2488899999999999874
No 240
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=61.59 E-value=11 Score=42.70 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=13.1
Q ss_pred eEEecCCCcHHHHHHHHH
Q 002898 19 IAEMKTGEGKTLVSTLAA 36 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa 36 (869)
+.-=.+|.|||.++--.+
T Consensus 59 lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 59 LIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 666789999998654443
No 241
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=61.18 E-value=9.8 Score=40.20 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=24.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
++-.+.|.|||.+++-.|+..|-.|++|.+|=.
T Consensus 6 v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 6 ITSGKGGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred EecCCCCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 455689999998766666656778988988833
No 242
>PLN03025 replication factor C subunit; Provisional
Probab=60.87 E-value=16 Score=40.64 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=12.2
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
+..++||||||.|-
T Consensus 99 ~~kviiiDE~d~lt 112 (319)
T PLN03025 99 RHKIVILDEADSMT 112 (319)
T ss_pred CeEEEEEechhhcC
Confidence 57899999999973
No 243
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=60.54 E-value=30 Score=33.13 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=24.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
..=+.|.|||.++...+...+-.|+.|.++....
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 3446899998765555544466899999988776
No 244
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=60.23 E-value=10 Score=42.05 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=24.9
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
-|-|+|||.+++-.++..|..|++|.+|=-
T Consensus 7 gKGGvGKTT~a~nLA~~La~~g~rVLlID~ 36 (296)
T TIGR02016 7 GKGGSGKSFTTTNLSHMMAEMGKRVLQLGC 36 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 478999999888777778889999987754
No 245
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=59.74 E-value=11 Score=38.79 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
|+-.+.|+|||.+++-.|...|-.|+.|.+|=.+..
T Consensus 22 v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 22 ITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 566788999998776666667889999999876543
No 246
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=59.07 E-value=1.1e+02 Score=33.46 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=28.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCC---cEEEEecCHHHHHH---HHHHHHHHhhh
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQR---DAEWMERVHRF 69 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~---~V~VvT~ndyLA~R---Dae~~~~ly~~ 69 (869)
|..+.-|.|||.+.++.++..++... .|.++.+++.|+.. ....+..+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS 57 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH
Confidence 45677899999887777766777643 44555444444443 44445545443
No 247
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=58.70 E-value=16 Score=38.53 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.3
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
.|. ++.-.+|.|||..+.--++-.+..|..|..+|.-+-
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 455 455689999998666655534557889988888443
No 248
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=58.29 E-value=22 Score=41.74 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=11.6
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
..+++||||+|.++
T Consensus 194 ~~dvLlIDDi~~l~ 207 (440)
T PRK14088 194 KVDVLLIDDVQFLI 207 (440)
T ss_pred cCCEEEEechhhhc
Confidence 57899999999864
No 249
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=58.23 E-value=50 Score=33.96 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=25.3
Q ss_pred CCCeEEe--cCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
.|.+.++ .+|.|||..+.-.++-.+-.|.+|..++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4554444 6999999887666654445677777776643
No 250
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=58.18 E-value=70 Score=36.29 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=36.6
Q ss_pred CeEEECCC----chhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHH
Q 002898 93 DITYTNNS----ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAEL 168 (869)
Q Consensus 93 DI~YgT~~----e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~ 168 (869)
|+.+-++. .++.|-.|+-...-....... +.+++|||+||.|= . ..++.+.+.
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g---~~kV~iI~~ae~m~-~-------------------~AaNaLLKt 131 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLG---GAKVVWLPDAALLT-D-------------------AAANALLKT 131 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccC---CceEEEEcchHhhC-H-------------------HHHHHHHHH
Confidence 66665543 366777776432111112233 78999999999983 2 267889999
Q ss_pred cccCC
Q 002898 169 LVQGL 173 (869)
Q Consensus 169 l~~~~ 173 (869)
|+++-
T Consensus 132 LEEPp 136 (334)
T PRK07993 132 LEEPP 136 (334)
T ss_pred hcCCC
Confidence 98643
No 251
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=58.10 E-value=35 Score=30.93 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=26.3
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
.-.+-|.|||.++.-.+...+-.|++|.++-.+..
T Consensus 5 ~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 5 ANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 44578999998665555555668999999987766
No 252
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=58.02 E-value=58 Score=40.47 Aligned_cols=113 Identities=33% Similarity=0.468 Sum_probs=66.6
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCCCCHHHHH------
Q 002898 19 IAEMKTGEGKTLV-STLAAYLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMIPEERR------ 87 (869)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G---~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv~~i~~~~~~~~rk------ 87 (869)
|.-=.-|=|||+- ..+.|+| |=+- .+..||||...|- .|...+-.|+ .++|.-.-|+ +.+|+
T Consensus 590 ILADeMGLGKTVQsisvlAhL-aE~~nIwGPFLVVtpaStL~----NWaqEisrFlP~~k~lpywGs--~~eRkiLrKfw 662 (1185)
T KOG0388|consen 590 ILADEMGLGKTVQSISVLAHL-AETHNIWGPFLVVTPASTLH----NWAQEISRFLPSFKVLPYWGS--PSERKILRKFW 662 (1185)
T ss_pred eehhhhccchhHHHHHHHHHH-HHhccCCCceEEeehHHHHh----HHHHHHHHhCccceeecCcCC--hhhhHHHHHhc
Confidence 4434569999984 3444442 3322 2678999988885 5888888887 4665544443 23332
Q ss_pred ---hccC----CCeEEECCCchhhh--HHHHhhccchhhhhccCCCCceEEEeechhhh-----------hhhcCCCcee
Q 002898 88 ---SNYR----CDITYTNNSELGFD--YLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV-----------LIDEGRNPLL 147 (869)
Q Consensus 88 ---~aY~----~DI~YgT~~e~~fD--yLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi-----------LiDea~tPLi 147 (869)
..|. .||++.+---+.-| ||+. | +-.|.|+|||..| |.=.+|+-|.
T Consensus 663 ~rKnmY~rna~fhVviTSYQlvVtDeky~qk---------v-----KWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLL 728 (1185)
T KOG0388|consen 663 NRKNMYRRNAPFHVVITSYQLVVTDEKYLQK---------V-----KWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLL 728 (1185)
T ss_pred chhhhhccCCCceEEEEeeeeeechHHHHHh---------h-----hhhheehhHHHHhhhhhhhHHHHHhhhhccceee
Confidence 2343 36776554333222 3311 1 5679999999854 3344677788
Q ss_pred ecCCC
Q 002898 148 ISGEA 152 (869)
Q Consensus 148 iSg~~ 152 (869)
++|.+
T Consensus 729 LTGTP 733 (1185)
T KOG0388|consen 729 LTGTP 733 (1185)
T ss_pred ecCCc
Confidence 88753
No 253
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=57.73 E-value=37 Score=34.59 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=40.7
Q ss_pred hhhHHHHHHHhCC---CeEEecCCCcHHH-HHHHHHHH-------HHHcCCcEEEEecCHHHHHHHHHHHHH
Q 002898 5 DVQIIGGAVLHDG---SIAEMKTGEGKTL-VSTLAAYL-------NALTGEGVHVVTVNDYLAQRDAEWMER 65 (869)
Q Consensus 5 dvQl~g~~~L~~G---~IaEm~TGEGKTL-va~lpa~l-------~AL~G~~V~VvT~ndyLA~RDae~~~~ 65 (869)
+-|..++..++.. .+++=.-|+|||- ++.+.+.+ ....++.|.|+++|..-...-.+.+..
T Consensus 4 ~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 4 ESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4577777766543 4777788999994 34444433 145678999999998877776666655
No 254
>PRK05580 primosome assembly protein PriA; Validated
Probab=57.72 E-value=43 Score=41.64 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCC
Q 002898 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (869)
Q Consensus 337 ~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~-gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmA 413 (869)
.|....+.-+.+....|+.|||.+++++.+..+.+.|++. |+...+++++....++.....+ ..| ...|.|+|..+
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVgTrsa 251 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIGARSA 251 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEeccHH
Confidence 3444434444444567899999999999999999999764 7888899986433333222222 345 34788999643
No 255
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.99 E-value=30 Score=43.49 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred cCCCcHHHHHHHHHHHHH-HcC-CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH----HhccCCC-eE
Q 002898 23 KTGEGKTLVSTLAAYLNA-LTG-EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER----RSNYRCD-IT 95 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~A-L~G-~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~r----k~aY~~D-I~ 95 (869)
.||.|||.++...+.... ..| +.|.++|.-.|=+- -.+.+.-+.+.+|+.+-.+. ++.+- +..-.+| |+
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Rig-A~eQL~~~a~~~gvpv~~~~---~~~~l~~al~~~~~~D~VL 268 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIG-ALEQLRIYGRILGVPVHAVK---DAADLRFALAALGDKHLVL 268 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchH-HHHHHHHHHHhCCCCccccC---CHHHHHHHHHHhcCCCEEE
Confidence 699999877666665443 456 58999998765311 24677777888998876543 22221 1122345 55
Q ss_pred EECCCchh
Q 002898 96 YTNNSELG 103 (869)
Q Consensus 96 YgT~~e~~ 103 (869)
+=|+++..
T Consensus 269 IDTAGRs~ 276 (767)
T PRK14723 269 IDTVGMSQ 276 (767)
T ss_pred EeCCCCCc
Confidence 56777654
No 256
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.85 E-value=37 Score=40.66 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=44.0
Q ss_pred HHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEeecCCcchhhHHHHH-HHcCCCccEEEEcC
Q 002898 348 SMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETV-AQAGRKYAITISTN 411 (869)
Q Consensus 348 ~~~~~grPVLV~t~Si~~SE~ls~~L~~~-gi~~~vLna~~~~~~~Ea~Ii-a~AG~~g~VTIATn 411 (869)
.....|+.|||.++++.-+..+.+.|++. |.++.++|+.....++..... ...| ...|.|+|.
T Consensus 20 ~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVVGTr 84 (505)
T TIGR00595 20 KVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVIGTR 84 (505)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEECCh
Confidence 33456889999999999999999999764 788899998643333322222 1344 346888885
No 257
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=56.22 E-value=17 Score=45.52 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=40.7
Q ss_pred CCCeEEecCCCcHHH--HHHHHHHHHHHcC-----CcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002898 16 DGSIAEMKTGEGKTL--VSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (869)
Q Consensus 16 ~G~IaEm~TGEGKTL--va~lpa~l~AL~G-----~~V~VvT~ndyLA~RDae~~~~ly~~LGL 72 (869)
.|.|.-=.-|.|||+ ++.|-.||.--.+ ....||+|.--|- .|-..|.+++|.
T Consensus 264 ~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~----nWkkEF~KWl~~ 323 (776)
T KOG0390|consen 264 GGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVN----NWKKEFGKWLGN 323 (776)
T ss_pred CceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHH----HHHHHHHHhccc
Confidence 355655567999997 6777777666566 7889999977664 599999999985
No 258
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=55.71 E-value=13 Score=43.19 Aligned_cols=33 Identities=36% Similarity=0.401 Sum_probs=26.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
|+-.|-|.|||.+++-.|+..|+.|+.|.||=-
T Consensus 126 v~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 126 VTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 566689999998777777778999999988743
No 259
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=55.67 E-value=18 Score=40.52 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=60.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCc-EEEEecCHHH---HHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEG-VHVVTVNDYL---AQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~-V~VvT~ndyL---A~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI 94 (869)
+.==.||-||.-+.+-.++-|.+.|+. ..-||.|+-| |+||...++.- .+.+-.+. .++.. .......+|
T Consensus 66 ~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~----~i~v~~l~-~~~~~-~~~~~~~Gv 139 (303)
T PF13872_consen 66 FLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD----NIPVHPLN-KFKYG-DIIRLKEGV 139 (303)
T ss_pred EeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC----cccceech-hhccC-cCCCCCCCc
Confidence 555679999987655555558999975 6778888766 67777765521 22222111 11110 112345678
Q ss_pred EEECCCchhhhHHHH-hhccchhhhhccC-CCCceEEEeechhhh
Q 002898 95 TYTNNSELGFDYLRD-NLAANSEQLVMRW-PKPFHFAIVDEVDSV 137 (869)
Q Consensus 95 ~YgT~~e~~fDyLrD-~l~~~~~~~v~r~-~R~~~~aIVDEvDsi 137 (869)
+++|=+.|.-..=.. .-..+.++++.=. .-.-.++|+||+|.+
T Consensus 140 lF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 140 LFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred cchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 988877753211000 0011112222110 112348999999996
No 260
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=55.37 E-value=13 Score=38.61 Aligned_cols=28 Identities=32% Similarity=0.201 Sum_probs=22.5
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
|=|.|||.+++-.|+..|-.|++|.||=
T Consensus 8 KGGvGKTt~~~nLA~~la~~G~rvLliD 35 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 6799999877776766788899888773
No 261
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=54.83 E-value=14 Score=40.04 Aligned_cols=30 Identities=33% Similarity=0.237 Sum_probs=24.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|+. |-|.|||.+++=.|+..|-.|++|.||
T Consensus 6 v~~-KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 6 IYG-KGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EeC-CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 343 789999987777777778899999988
No 262
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=54.53 E-value=16 Score=38.42 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=27.2
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+--+=|.|||.+++-.|+..|..|++|.+|=...
T Consensus 7 ~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 7 VGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred EeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3446799999887777776788999999998754
No 263
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=53.91 E-value=67 Score=34.06 Aligned_cols=27 Identities=26% Similarity=-0.027 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 25 GEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 25 GEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
.+|||.-.+-.++-....|+.|.|.||
T Consensus 14 ~SGKT~eLl~r~~~~~~~g~~v~vfkp 40 (201)
T COG1435 14 FSGKTEELLRRARRYKEAGMKVLVFKP 40 (201)
T ss_pred cCcchHHHHHHHHHHHHcCCeEEEEec
Confidence 589999988888877889999999998
No 264
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=53.83 E-value=3.3 Score=42.82 Aligned_cols=54 Identities=24% Similarity=0.200 Sum_probs=23.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~-~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.-..=|-|||.+..+.+....-.|. .|.|..||..=++.-++....-.+.+|++
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~ 56 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYK 56 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccc
Confidence 3455699999988888762222333 68888898875555444444444444444
No 265
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=53.70 E-value=14 Score=39.77 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=23.5
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
|=|.|||.+++-.|+..|..|++|.||=-
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 78999998777767667889999988843
No 266
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=53.25 E-value=16 Score=40.88 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.7
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
+..++||||+|.++
T Consensus 129 ~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 129 DSLIIVLDEIDYLV 142 (365)
T ss_pred CeEEEEECchhhhc
Confidence 45689999999985
No 267
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=52.98 E-value=11 Score=37.97 Aligned_cols=46 Identities=24% Similarity=0.163 Sum_probs=27.2
Q ss_pred HHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 85 ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 85 ~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.|..+..|||++++-+ ||.+-.....-..... +-.++|+||||.+.
T Consensus 113 ~r~~~~~adivi~~y~-----yl~~~~~~~~~~~~~~---~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 113 ARELAKNADIVICNYN-----YLFDPSIRKSLFGIDL---KDNIVIFDEAHNLE 158 (174)
T ss_dssp HHHCGGG-SEEEEETH-----HHHSHHHHHHHCT--C---CCEEEEETTGGGCG
T ss_pred HHHhcccCCEEEeCHH-----HHhhHHHHhhhccccc---cCcEEEEecccchH
Confidence 4667788999999875 3433222111011222 56899999999963
No 268
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=52.87 E-value=18 Score=46.02 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=12.1
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
...++||||+|.+.
T Consensus 869 ~v~IIILDEID~L~ 882 (1164)
T PTZ00112 869 NVSILIIDEIDYLI 882 (1164)
T ss_pred cceEEEeehHhhhC
Confidence 67799999999874
No 269
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=52.78 E-value=16 Score=41.99 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=25.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
|+--|-|+|||.+++-.|+..|..|+.|.+|=-
T Consensus 109 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 141 (387)
T TIGR03453 109 VTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDL 141 (387)
T ss_pred EEccCCCcCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 456778999998776666667889999988854
No 270
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=52.63 E-value=17 Score=38.13 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=23.3
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+.|+|||.++.-.+...|-.|+.|+++...
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d 36 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 689999986555555567889999998764
No 271
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=52.24 E-value=36 Score=42.74 Aligned_cols=102 Identities=23% Similarity=0.302 Sum_probs=59.4
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC------c-EEEEecCH----HHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE------G-VHVVTVND----YLAQRDAEWMERVHRFLGLSVGLIQR- 79 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~------~-V~VvT~nd----yLA~RDae~~~~ly~~LGLsv~~i~~- 79 (869)
++.+- |+.=.||+|||.-.-=-+| .|=.|. + +.|--|-+ ..|+|-+.+++. ||=.|+....
T Consensus 268 In~n~vvIIcGeTGsGKTTQvPQFLY-EAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~----~~~eVsYqIRf 342 (1172)
T KOG0926|consen 268 INENPVVIICGETGSGKTTQVPQFLY-EAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV----LGSEVSYQIRF 342 (1172)
T ss_pred hhcCCeEEEecCCCCCccccchHHHH-HcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc----CccceeEEEEe
Confidence 34444 7788999999974333333 232221 1 23333333 467888888775 5666665331
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
+.+ ..-...|-|-|-|=| ||. |.. +..++ .+.++||||||-
T Consensus 343 d~t-----i~e~T~IkFMTDGVL----LrE-i~~---DflL~---kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 343 DGT-----IGEDTSIKFMTDGVL----LRE-IEN---DFLLT---KYSVIILDEAHE 383 (1172)
T ss_pred ccc-----cCCCceeEEecchHH----HHH-HHH---hHhhh---hceeEEechhhh
Confidence 000 111235888888764 443 332 35666 899999999995
No 272
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=52.02 E-value=15 Score=39.93 Aligned_cols=27 Identities=37% Similarity=0.283 Sum_probs=23.6
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|-|.|||.+++-.|+..|..|++|.||
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 689999998777777789999999988
No 273
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=51.74 E-value=64 Score=36.59 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCeEEECC---CchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHH
Q 002898 92 CDITYTNN---SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAEL 168 (869)
Q Consensus 92 ~DI~YgT~---~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~ 168 (869)
.|+.+-.+ ..++.|-.|+-...-....... +.+++|||+||.|= . ..++.+.+.
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g---~~KV~iI~~a~~m~-~-------------------~AaNaLLKt 130 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQG---GNKVVYIQGAERLT-E-------------------AAANALLKT 130 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccC---CceEEEEechhhhC-H-------------------HHHHHHHHH
Confidence 36666544 3577787776322110011223 78999999999983 1 267788899
Q ss_pred cccCC
Q 002898 169 LVQGL 173 (869)
Q Consensus 169 l~~~~ 173 (869)
|+++-
T Consensus 131 LEEPp 135 (325)
T PRK06871 131 LEEPR 135 (325)
T ss_pred hcCCC
Confidence 98653
No 274
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=51.70 E-value=18 Score=38.00 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=24.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
++-.+-|.|||.+++-.|+..|..|+.|.+|=-
T Consensus 5 v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~ 37 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVALAKLGKKVLALDA 37 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345578999998777666656788988888744
No 275
>PRK10037 cell division protein; Provisional
Probab=51.57 E-value=18 Score=38.80 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=26.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
++--|=|.|||.+++-.++..|..|+.|.+|=-..
T Consensus 6 v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 6 LQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 34456799999876666666789999999995433
No 276
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=50.93 E-value=18 Score=40.41 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=25.1
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
|-|-|||.+++..|+..|-.|++|.||+....
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 57999998777666667889999999988653
No 277
>PHA02518 ParA-like protein; Provisional
Probab=50.55 E-value=20 Score=36.69 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=24.7
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+--|=|.|||.+++-.|+..|..|+.|.+|--.
T Consensus 6 ~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 6 LNQKGGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred EcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 345679999987666666577889999988554
No 278
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=49.92 E-value=17 Score=41.90 Aligned_cols=32 Identities=41% Similarity=0.238 Sum_probs=26.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
|+-.|=|.|||.+++-.|+..|..|++|.||=
T Consensus 111 i~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 111 VAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred EECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 66778999999877766666799999998883
No 279
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=49.05 E-value=43 Score=34.54 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=46.5
Q ss_pred CCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 002898 327 LPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (869)
Q Consensus 327 ~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~ 379 (869)
|--.+|.+.++.+..++.-|.+-.+.|.+||+++.+....+.+.+.|++.|++
T Consensus 21 H~c~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d 73 (191)
T PF14417_consen 21 HICAFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAGPD 73 (191)
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcCCc
Confidence 44477899999999999999999999999999999888888999999887664
No 280
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=48.79 E-value=32 Score=34.23 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEeec
Q 002898 334 TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNA 385 (869)
Q Consensus 334 t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~----gi~~~vLna 385 (869)
+...+...++..+.+..++|..|+|.|.+.+.++.|-++|-.. -|||.....
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~ 65 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGE 65 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCC
Confidence 5667888899999999999999999999999999999999653 589876433
No 281
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=48.69 E-value=22 Score=36.47 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=23.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyL 55 (869)
+..=.||.|||..+...+.-..-.|..|-.++..+-+
T Consensus 51 ~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 51 ILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 6777899999975554443222378889888875543
No 282
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=48.69 E-value=22 Score=38.02 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=22.5
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
|=|.|||-+++-.|+..|..|++|.+|=
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 7899999876666666778999998883
No 283
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=48.32 E-value=20 Score=41.50 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=26.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
|+--|=|.|||.+++-.|+..|+.|++|.||=
T Consensus 111 v~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 111 VMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56778999999877766666789999998884
No 284
>PRK08760 replicative DNA helicase; Provisional
Probab=48.20 E-value=71 Score=38.05 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=61.5
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHH
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEER 86 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~---ndyLA~RDae~~~~ly~~LGLsv~~i-~~~~~~~~r 86 (869)
+..|. |+-..||-|||..++--|.-.|.. |++|.+++. .+.|+.|-.... -+++...+ .+.++.++.
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~------s~i~~~~i~~g~l~~~e~ 299 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN------GRINAQRLRTGALEDEDW 299 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhh------CCCcHHHHhcCCCCHHHH
Confidence 45666 677889999998766555434454 888887754 234444432221 12222211 223444432
Q ss_pred H-------hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 87 R-------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 87 k-------~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
. ...+..+.+-....+..+.++..+..- .... +++++|||=..-|
T Consensus 300 ~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l---~~~~---~~~lVvIDyLql~ 351 (476)
T PRK08760 300 ARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRL---KREH---DLGLIVIDYLQLM 351 (476)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHH---HHhc---CCCEEEEecHHhc
Confidence 1 122345555555567778887655321 1123 6889999976543
No 285
>PRK07413 hypothetical protein; Validated
Probab=48.04 E-value=53 Score=38.12 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=21.8
Q ss_pred eEEecCCCcHH-HHHHHHHHHHHH-cCC------cEEEE
Q 002898 19 IAEMKTGEGKT-LVSTLAAYLNAL-TGE------GVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKT-Lva~lpa~l~AL-~G~------~V~Vv 49 (869)
++++-||.||- -+|+|-.++.|+ .|. +|.|+
T Consensus 21 li~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~iv 59 (382)
T PRK07413 21 QLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLL 59 (382)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEE
Confidence 78899999884 245555556776 576 78776
No 286
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=48.02 E-value=26 Score=32.67 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=24.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ndy 54 (869)
++-.|-|.|||.++.-.+...+.. |+.|+++=.+..
T Consensus 4 ~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 4 FIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ 40 (106)
T ss_pred EECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 355688999998544444445666 999999854443
No 287
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.94 E-value=29 Score=42.90 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.9
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
++.++||||||.|
T Consensus 124 r~KViIIDEah~L 136 (700)
T PRK12323 124 RFKVYMIDEVHML 136 (700)
T ss_pred CceEEEEEChHhc
Confidence 6899999999987
No 288
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=47.77 E-value=44 Score=42.52 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=12.1
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+++++||||+|.|
T Consensus 120 ~~KV~IIDEad~l 132 (824)
T PRK07764 120 RYKIFIIDEAHMV 132 (824)
T ss_pred CceEEEEechhhc
Confidence 7899999999998
No 289
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=47.38 E-value=22 Score=38.48 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=26.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|.-.+-|+|||.+++-.|...|..|++|.+|=.+
T Consensus 108 vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 108 VVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred EECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4555689999987777666678889999988653
No 290
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=47.34 E-value=66 Score=37.99 Aligned_cols=13 Identities=0% Similarity=0.271 Sum_probs=10.6
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
..+++||||+|.+
T Consensus 202 ~~dvLiIDDiq~l 214 (445)
T PRK12422 202 NVDALFIEDIEVF 214 (445)
T ss_pred cCCEEEEcchhhh
Confidence 6788888988875
No 291
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=47.19 E-value=21 Score=38.65 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=25.2
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+-|+|||.+++-.+...|-.|+.|.+|....
T Consensus 8 kgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 8 KGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 5899999876666666788999999998754
No 292
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=47.12 E-value=23 Score=38.41 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=24.2
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
=|-|.|||.+++-.|+..|-.|++|.||=
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 8 GKGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CCCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 37899999987777777788999999883
No 293
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=46.64 E-value=27 Score=34.55 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=23.2
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
+--+=|.|||.+++-.++..+..|+.|.+|
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 445679999987666666678889999888
No 294
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=46.53 E-value=92 Score=35.99 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=24.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
+.--.+|.|||..+.-.+...+-.|..|..++..+.
T Consensus 86 LI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 455579999998766555545556778887776543
No 295
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=46.26 E-value=15 Score=46.11 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCchhhHHHHHHHh------CCCeEEecCCCcHHHHHHHHH
Q 002898 2 RHFDVQIIGGAVLH------DGSIAEMKTGEGKTLVSTLAA 36 (869)
Q Consensus 2 rp~dvQl~g~~~L~------~G~IaEm~TGEGKTLva~lpa 36 (869)
.||++|+.=...++ +.-+.|-.||.||||..+...
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 48999987766443 234999999999998654433
No 296
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=46.24 E-value=23 Score=38.48 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=23.7
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~ndy 54 (869)
+.-=.+|.|||.. +++.-.+. -.|..|.++|.++-
T Consensus 109 ~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el 144 (254)
T COG1484 109 VLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDL 144 (254)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHH
Confidence 5555799999964 44444433 55788888888653
No 297
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=45.61 E-value=77 Score=36.51 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEc--CCC
Q 002898 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITIST--NMA 413 (869)
Q Consensus 336 ~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIAT--nmA 413 (869)
-+|+..+++++++..+.|.||||=-..... .|++.||+.+++-...+--..=++-+.+||-+ .|.|+| |-+
T Consensus 7 ~~~~~~~~~~l~~~~~~~~~ilveg~~d~~------~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi~-rVVi~~D~d~~ 79 (360)
T PRK14719 7 LEKLLLIIDDLKLLAEKGIPILVEGPNDIL------SLKNLKINANFITVSNTPVFQIADDLIAENIS-EVILLTDFDRA 79 (360)
T ss_pred HHHHHHHHHHHHHhhhCCCEEEEEcchHHH------HHHHcCCCCcEEEEeCCchHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 357778899999888889999996665543 47888997665544211111234455578844 899999 468
Q ss_pred cCC
Q 002898 414 GRG 416 (869)
Q Consensus 414 GRG 416 (869)
|||
T Consensus 80 G~~ 82 (360)
T PRK14719 80 GRV 82 (360)
T ss_pred CCc
Confidence 888
No 298
>PRK13236 nitrogenase reductase; Reviewed
Probab=45.53 E-value=22 Score=39.29 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=24.7
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|-|.|||.+++-.|+..|..|++|.+|=..
T Consensus 14 KGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 689999998777777788899999988443
No 299
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=45.45 E-value=27 Score=37.36 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=25.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHH-HcCCcEEEEe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVT 50 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A-L~G~~V~VvT 50 (869)
|+..|=|.|||.+++-.++..| ..|++|.+|=
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliD 39 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLLID 39 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 6677889999988777777777 6668998873
No 300
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=45.43 E-value=31 Score=41.26 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 32 STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 32 a~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
|++++++.-+.-..+.|.+-+.. ++..|.=++..|||++|-+.|+++.++|-.+. .+||..+|-
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk----~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD 484 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKK----QAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD 484 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHH----HHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEec
Confidence 45555555566677888877654 55568899999999999999999988886543 467777774
No 301
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=45.30 E-value=21 Score=38.55 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=22.5
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|=|.|||.+++-.|+..|..|+.|.||
T Consensus 8 KGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 679999998777777778889999887
No 302
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.98 E-value=46 Score=43.65 Aligned_cols=56 Identities=29% Similarity=0.338 Sum_probs=40.6
Q ss_pred hCCC-eEEecCCCcHHHHHHHHHHHHHHcC-----CcEEEEecCH----HHHHHHHHHHHHHhhhc
Q 002898 15 HDGS-IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVND----YLAQRDAEWMERVHRFL 70 (869)
Q Consensus 15 ~~G~-IaEm~TGEGKTLva~lpa~l~AL~G-----~~V~VvT~nd----yLA~RDae~~~~ly~~L 70 (869)
++|. ++|..-|+|||-+.+....-.-+.| ..+.|||.|+ +|..|..+.+...+..+
T Consensus 8 l~G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~rL~~~~~~~ 73 (1087)
T TIGR00609 8 LNGTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGRIHQALRAL 73 (1087)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 9999999999987555543223333 4689999876 78888888887776654
No 303
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=44.92 E-value=21 Score=40.78 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=34.2
Q ss_pred hCCC--eEEecCCCcHHHHH-HHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 15 HDGS--IAEMKTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva-~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.+|. .+.=.=|.|||.+. ++-.++ ...|+.|.++.|+--=|...-. =.-++.+|||.+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~~~~~~~~~a~tg~AA~~i~~-G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYL-RSRGKKVLVTAPTGIAAFNIPG-GRTIHSFFGIPIN 81 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHh-ccccceEEEecchHHHHHhccC-CcchHHhcCcccc
Confidence 4454 44556789999653 333332 3356677777777655543311 1246777777755
No 304
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.89 E-value=46 Score=39.69 Aligned_cols=101 Identities=25% Similarity=0.267 Sum_probs=50.9
Q ss_pred hCCC--eEEecCCCcHHHH-HHHHHHHHHHc-CCcEEEEecCH----HHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHH
Q 002898 15 HDGS--IAEMKTGEGKTLV-STLAAYLNALT-GEGVHVVTVND----YLAQRDAEWMERVHRFLGLSVGLIQRGMIPEER 86 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLv-a~lpa~l~AL~-G~~V~VvT~nd----yLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~r 86 (869)
+++. |.-=.||+|||.- =-..+. ..+. ..+|-+--|-+ .+|+|-+++|-- -||-.||....--+
T Consensus 60 ~~nQ~~v~vGetgsGKttQiPq~~~~-~~~~~~~~v~CTQprrvaamsva~RVadEMDv---~lG~EVGysIrfEd---- 131 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIPQFVLE-YELSHLTGVACTQPRRVAAMSVAQRVADEMDV---TLGEEVGYSIRFED---- 131 (699)
T ss_pred hcCceEEEEecCCCCccccCcHHHHH-HHHhhccceeecCchHHHHHHHHHHHHHHhcc---ccchhccccccccc----
Confidence 4444 4555799999962 222221 1121 14444333333 578888888862 23444443322100
Q ss_pred HhccCCCeEEECCCchhhhHHHHhhccc--hhhhhccCCCCceEEEeechhh
Q 002898 87 RSNYRCDITYTNNSELGFDYLRDNLAAN--SEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 87 k~aY~~DI~YgT~~e~~fDyLrD~l~~~--~~~~v~r~~R~~~~aIVDEvDs 136 (869)
.+||..+ +-|..|.|-.+ ..+..+. ...++|+||||.
T Consensus 132 ---------C~~~~T~-Lky~tDgmLlrEams~p~l~---~y~viiLDeahE 170 (699)
T KOG0925|consen 132 ---------CTSPNTL-LKYCTDGMLLREAMSDPLLG---RYGVIILDEAHE 170 (699)
T ss_pred ---------cCChhHH-HHHhcchHHHHHHhhCcccc---cccEEEechhhh
Confidence 0223332 44555544322 1123444 789999999984
No 305
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=44.85 E-value=28 Score=44.34 Aligned_cols=138 Identities=22% Similarity=0.344 Sum_probs=74.6
Q ss_pred CCeEEecCCCcHHH---HHHHHHHHHHHcC-CcEEEEecCHHHHHHHHHHHHHHhhhcC-C------eEEEEcCCCCHHH
Q 002898 17 GSIAEMKTGEGKTL---VSTLAAYLNALTG-EGVHVVTVNDYLAQRDAEWMERVHRFLG-L------SVGLIQRGMIPEE 85 (869)
Q Consensus 17 G~IaEm~TGEGKTL---va~lpa~l~AL~G-~~V~VvT~ndyLA~RDae~~~~ly~~LG-L------sv~~i~~~~~~~~ 85 (869)
|.|.-=--|=|||| +|+-.+.++--.| ++|.||||=..+- .||..|-.|+- + .|.-+..-..+++
T Consensus 698 GcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~----NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~ 773 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTAL----NWMNEFEKWMEGLEDDEKLEVSELATVKRPEE 773 (1567)
T ss_pred chHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHH----HHHHHHHHhcccccccccceeehhhhccChHH
Confidence 55544446889998 2333333332234 6899999976653 68888887773 3 3333322334666
Q ss_pred HHhccC---C--CeEEECCCchhhhHHHHhhccc------------hhhhhccCCCCceEEEeechhhhhhhcCCC----
Q 002898 86 RRSNYR---C--DITYTNNSELGFDYLRDNLAAN------------SEQLVMRWPKPFHFAIVDEVDSVLIDEGRN---- 144 (869)
Q Consensus 86 rk~aY~---~--DI~YgT~~e~~fDyLrD~l~~~------------~~~~v~r~~R~~~~aIVDEvDsiLiDea~t---- 144 (869)
|.-+.. . .|.. +|.|..|. |+.. ...++-+ +.+++|-||+|-+=-+.+.+
T Consensus 774 R~~~L~~W~~~ggVmI-----iGYdmyRn-La~gr~vk~rk~ke~f~k~lvdp---GPD~vVCDE~HiLKNeksa~Skam 844 (1567)
T KOG1015|consen 774 RSYMLQRWQEDGGVMI-----IGYDMYRN-LAQGRNVKSRKLKEIFNKALVDP---GPDFVVCDEGHILKNEKSAVSKAM 844 (1567)
T ss_pred HHHHHHHHHhcCCEEE-----EehHHHHH-HhcccchhhhHHHHHHHHhccCC---CCCeEEecchhhhccchHHHHHHH
Confidence 653332 1 2211 24444443 3211 0123334 88999999999654443222
Q ss_pred -------ceeecCCC-CCCcccHHHHHHHHH
Q 002898 145 -------PLLISGEA-SKDVARYPVAAKVAE 167 (869)
Q Consensus 145 -------PLiiSg~~-~~~~~~~~~~~~~~~ 167 (869)
-++++|.+ ..+-.-|+++..||+
T Consensus 845 ~~irtkRRI~LTGTPLQNNLmEY~CMVnFVK 875 (1567)
T KOG1015|consen 845 NSIRTKRRIILTGTPLQNNLMEYHCMVNFVK 875 (1567)
T ss_pred HHHHhheeEEeecCchhhhhHHHHHHHHhcc
Confidence 25677743 333345777666653
No 306
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=44.72 E-value=44 Score=41.32 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.9
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
++.++||||||.|
T Consensus 119 ~~KV~IIDEah~L 131 (647)
T PRK07994 119 RFKVYLIDEVHML 131 (647)
T ss_pred CCEEEEEechHhC
Confidence 6899999999986
No 307
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=44.64 E-value=26 Score=38.77 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
.|-|.|||.+++=.++..|..|++|.||=
T Consensus 11 ~KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68999999876666666788999999883
No 308
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.39 E-value=57 Score=38.44 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=33.2
Q ss_pred cCCCcHHHHHHHHHH-HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 23 KTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 23 ~TGEGKTLva~lpa~-l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.||.|||.+++-.|. ...-.|+.|+++|.-.|=+.- .+++....+.+|+.+.
T Consensus 231 ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA-~eQLk~yAe~lgvp~~ 283 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA-IEQLKRYADTMGMPFY 283 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH-HHHHHHHHHhcCCCee
Confidence 799999976655554 334568899999976643321 2344445577777653
No 309
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.29 E-value=40 Score=40.37 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred CeEEECC-CchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 93 DITYTNN-SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 93 DI~YgT~-~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
||+...+ +..+.|-+|+-+..-....+.. .+.++||||||.+
T Consensus 86 Dv~eidaas~~~vddIR~Iie~~~~~P~~~---~~KVvIIDEah~L 128 (491)
T PRK14964 86 DVIEIDAASNTSVDDIKVILENSCYLPISS---KFKVYIIDEVHML 128 (491)
T ss_pred CEEEEecccCCCHHHHHHHHHHHHhccccC---CceEEEEeChHhC
Confidence 5554433 2445666665432111112233 6889999999875
No 310
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=44.19 E-value=59 Score=38.83 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=68.0
Q ss_pred CCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeEEEEcCCCCHH-HHHhccCCC
Q 002898 16 DGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSVGLIQRGMIPE-ERRSNYRCD 93 (869)
Q Consensus 16 ~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv~~i~~~~~~~-~rk~aY~~D 93 (869)
.|-|.-=.-|-|||+-+.- ++|+-+.+.+..||+|.-.|.+ |...+-.+. |-.-.+++.|.... .-++--+-|
T Consensus 205 ~GGiLADEMGMGKTIQtIa-Lllae~~ra~tLVvaP~VAlmQ----W~nEI~~~T~gslkv~~YhG~~R~~nikel~~YD 279 (791)
T KOG1002|consen 205 AGGILADEMGMGKTIQTIA-LLLAEVDRAPTLVVAPTVALMQ----WKNEIERHTSGSLKVYIYHGAKRDKNIKELMNYD 279 (791)
T ss_pred ccceehhhhccchHHHHHH-HHHhccccCCeeEEccHHHHHH----HHHHHHHhccCceEEEEEecccccCCHHHhhcCc
Confidence 4556555679999984322 2234788999999999988865 666665443 43334555553321 112333458
Q ss_pred eEEECCCchhhhHHHHhhccc------hhhhhccCCCCceEEEeechhhhh
Q 002898 94 ITYTNNSELGFDYLRDNLAAN------SEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 94 I~YgT~~e~~fDyLrD~l~~~------~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+|..|-+-+.--|=+.+-..+ ++..++. +=.++-+|+||||-|=
T Consensus 280 vVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLH-si~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 280 VVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLH-SIKFYRIILDEAHNIK 329 (791)
T ss_pred EEEEecHHHHHHHHhccccccccCCcccccchhh-hceeeeeehhhhcccc
Confidence 888887665544544222211 1111221 1256779999999874
No 311
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=44.10 E-value=38 Score=29.17 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=20.3
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
+.|+|||.++...+...+-.|..|.++-
T Consensus 7 ~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 7 KGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4599999876665554555788887777
No 312
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.08 E-value=1.7e+02 Score=36.64 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=43.3
Q ss_pred CchhhHHHHHH----HhCCC--eEEecCCCcHHHHHHHHHHHHHHc--C--CcEEEEecCHHHHHHHHHHHHHH
Q 002898 3 HFDVQIIGGAV----LHDGS--IAEMKTGEGKTLVSTLAAYLNALT--G--EGVHVVTVNDYLAQRDAEWMERV 66 (869)
Q Consensus 3 p~dvQl~g~~~----L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--G--~~V~VvT~ndyLA~RDae~~~~l 66 (869)
+||.|..-+-. |-+|. ++|+.||.|||++.+.|++ .+.. + .++..+|.+--=-.+-.++++.+
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL-~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLIL-AYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHH-HHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 37788765553 33444 9999999999999888885 4433 3 35777777666666666666664
No 313
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=44.06 E-value=29 Score=34.40 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=22.0
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
.=..||+|||.+++-.+...+-.|..|.++
T Consensus 3 ~~t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 3 TGTDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ecCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 345799999987665555466788888775
No 314
>PRK10818 cell division inhibitor MinD; Provisional
Probab=43.90 E-value=29 Score=37.34 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=26.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|+--+-|.|||.+++-.|+..|..|+.|.+|=-.
T Consensus 7 v~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D 40 (270)
T PRK10818 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 (270)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4556789999988777777778888888877553
No 315
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=43.86 E-value=70 Score=38.38 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=65.4
Q ss_pred EEecCCCcHHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhc--------CCeEEEEcCCCC-----HH
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFL--------GLSVGLIQRGMI-----PE 84 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~--G~~V~VvT~ndyLA~RDae~~~~ly~~L--------GLsv~~i~~~~~-----~~ 84 (869)
.+=.-|+|||.+.++-|...-.. ..+..+-+-|.-|+..--.-...||-.. .+-+.+.-+|.+ -.
T Consensus 181 IrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~ 260 (660)
T COG3972 181 IRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGM 260 (660)
T ss_pred hhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHH
Confidence 34447999999988877632222 2367888899999998888777777221 223334444433 22
Q ss_pred HHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 85 ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 85 ~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
-+..+--..|.|+-.+. +||.+-..+-.... ... -+++++|||.-.
T Consensus 261 ~~~~~~~~~~~fsg~g~-~F~~aC~eli~~~~--~~~---~yD~ilIDE~QD 306 (660)
T COG3972 261 YRYICHYYEIPFSGFGN-GFDAACKELIADIN--NKK---AYDYILIDESQD 306 (660)
T ss_pred HHHHhcccccccCCCCc-chHHHHHHHHHhhh--ccc---cccEEEeccccc
Confidence 22233233688885443 48887554433211 122 577888887643
No 316
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=43.34 E-value=53 Score=30.43 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCch
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~ 102 (869)
..|.|||..+-..+- ..|..+.-+..++-...
T Consensus 6 ~~G~GKT~l~~~la~---~l~~~~~~i~~~~~~~~--------------------------------------------- 37 (132)
T PF00004_consen 6 PPGTGKTTLARALAQ---YLGFPFIEIDGSELISS--------------------------------------------- 37 (132)
T ss_dssp STTSSHHHHHHHHHH---HTTSEEEEEETTHHHTS---------------------------------------------
T ss_pred cCCCCeeHHHHHHHh---hcccccccccccccccc---------------------------------------------
Q ss_pred hhhHHHHhhccchhhhhccCCCC-ceEEEeechhhhh
Q 002898 103 GFDYLRDNLAANSEQLVMRWPKP-FHFAIVDEVDSVL 138 (869)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~-~~~aIVDEvDsiL 138 (869)
.++-...++..--...... . ..++++||+|.+.
T Consensus 38 ~~~~~~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 38 YAGDSEQKIRDFFKKAKKS---AKPCVLFIDEIDKLF 71 (132)
T ss_dssp STTHHHHHHHHHHHHHHHT---STSEEEEEETGGGTS
T ss_pred ccccccccccccccccccc---ccceeeeeccchhcc
No 317
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=43.27 E-value=33 Score=36.87 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEcCC-CCHHHHH
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQRG-MIPEERR 87 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~---ndyLA~RDae~~~~ly~~LGLsv~~i~~~-~~~~~rk 87 (869)
..|. +.=..||.|||..+.=.++-.|+. |..|..++. .+.++.|-.. ...|++...+..+ +++++..
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la------~~s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLA------RLSGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHH------HHHTSTHHHHHCCGCHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH------HhhcchhhhhhccccCHHHHH
Confidence 3455 667889999998766666534555 467777664 2444444332 3345544333333 3444332
Q ss_pred hc-------cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 88 SN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 88 ~a-------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
.. ....+.+.....+.++-|++.+..-.. ... +++++|||=.+-|
T Consensus 91 ~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~--~~~---~~~~v~IDyl~ll 142 (259)
T PF03796_consen 91 RLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR--EGK---KVDVVFIDYLQLL 142 (259)
T ss_dssp HHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH--HST---TEEEEEEEEGGGS
T ss_pred HHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh--hcc---CCCEEEechHHHh
Confidence 21 123454444445677778776542211 113 7899999987754
No 318
>PRK12377 putative replication protein; Provisional
Probab=43.12 E-value=31 Score=37.58 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=24.7
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCHHHH
Q 002898 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLA 56 (869)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~ndyLA 56 (869)
+.-=.+|.|||.. .++.-.+ .-.|..|.++|.++.+.
T Consensus 105 ~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 105 VFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVVTVPDVMS 142 (248)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHcCCCeEEEEHHHHHH
Confidence 5555699999954 4444432 34688998888876544
No 319
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=43.03 E-value=21 Score=42.11 Aligned_cols=43 Identities=26% Similarity=0.435 Sum_probs=30.9
Q ss_pred ccCCCeEEECCCchhhhHHHHhhcc----chhhhhccCCCCceEEEeechhhhhh
Q 002898 89 NYRCDITYTNNSELGFDYLRDNLAA----NSEQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 89 aY~~DI~YgT~~e~~fDyLrD~l~~----~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
-|++||+.++| || ||--+.. ..+...+. ++.++|||-+|.|+.
T Consensus 129 Fy~SDIIiASP--LG---Lr~~i~~~~~~~~d~DFLS---SIEv~iiD~ad~l~M 175 (442)
T PF06862_consen 129 FYSSDIIIASP--LG---LRMIIGEEGEKKRDYDFLS---SIEVLIIDQADVLLM 175 (442)
T ss_pred cccCCEEEECh--HH---HHHHhccccccccccchhh---eeeeEeechhhHHHH
Confidence 36789999999 44 5544442 22334567 899999999999983
No 320
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=42.87 E-value=29 Score=37.19 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
++.-|=|.|||.+++..++..+..|+.|.||=.
T Consensus 6 v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~ 38 (231)
T PRK13849 6 FCSFKGGAGKTTALMGLCAALASDGKRVALFEA 38 (231)
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 345567999998877777778889999988844
No 321
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=42.68 E-value=26 Score=39.74 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.4
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
-+-|+|||.+++-.++..|..|++|.+|-.
T Consensus 38 gkgG~GKSt~a~nLa~~la~~g~rVllid~ 67 (329)
T cd02033 38 GKGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999777777667888999998844
No 322
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.66 E-value=35 Score=40.76 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.8
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
++.++||||||.+
T Consensus 121 ~~KV~IIDEah~L 133 (484)
T PRK14956 121 KYKVYIIDEVHML 133 (484)
T ss_pred CCEEEEEechhhc
Confidence 6789999999986
No 323
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=42.37 E-value=27 Score=38.68 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=23.4
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
|=|.|||.+++-.|+..|-.|++|.||=
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQIG 35 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999887777777788999998873
No 324
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=42.30 E-value=71 Score=39.77 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=65.3
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH--HcCCCccEEEE
Q 002898 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA--QAGRKYAITIS 409 (869)
Q Consensus 332 ~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia--~AG~~g~VTIA 409 (869)
|.|...|...+=+.+.+....|..||+++.=-..-+.+-++|..+|..+--|.+..+ ...-+++|. +|-..--..++
T Consensus 1023 FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk-~~dRrd~vrDwQ~sdiFvFLLS 1101 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSK-ASDRRDVVRDWQASDIFVFLLS 1101 (1185)
T ss_pred hhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcch-hhHHHHHHhhccCCceEEEEEe
Confidence 456777777665556667788999999999999999999999999999999998633 233356665 56444456778
Q ss_pred cCCCcCCcce
Q 002898 410 TNMAGRGTDI 419 (869)
Q Consensus 410 TnmAGRGTDI 419 (869)
|.-.|-|+..
T Consensus 1102 TRAGGLGINL 1111 (1185)
T KOG0388|consen 1102 TRAGGLGINL 1111 (1185)
T ss_pred cccCcccccc
Confidence 8877777654
No 325
>CHL00175 minD septum-site determining protein; Validated
Probab=42.17 E-value=30 Score=37.55 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=23.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|+--+-|.|||.+++-.++..|-.|+.|.+|
T Consensus 20 v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 20 ITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4455789999987666666567788888887
No 326
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=41.96 E-value=1.1e+02 Score=31.92 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCCeEE--ecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 16 DGSIAE--MKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 16 ~G~IaE--m~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
.|.+.+ =.+|.|||..+.-.++-.+..|.+|..++.-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455444 4799999986665555455678888888776
No 327
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.89 E-value=1.1e+02 Score=35.00 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchh
Q 002898 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELG 103 (869)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~~ 103 (869)
-|.|||.+.+=.|+..--.|+.|.+...--.=| =-.|+++---+.+|+.|..-..+ +.|..+.
T Consensus 148 NG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-aAiEQL~~w~er~gv~vI~~~~G----------------~DpAaVa 210 (340)
T COG0552 148 NGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-AAIEQLEVWGERLGVPVISGKEG----------------ADPAAVA 210 (340)
T ss_pred CCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-HHHHHHHHHHHHhCCeEEccCCC----------------CCcHHHH
Confidence 699999877666665667899998877644433 33466666677788887642222 2344455
Q ss_pred hhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 104 FDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 104 fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
||=+.. -..| +++++|+|=|=++
T Consensus 211 fDAi~~--------Akar---~~DvvliDTAGRL 233 (340)
T COG0552 211 FDAIQA--------AKAR---GIDVVLIDTAGRL 233 (340)
T ss_pred HHHHHH--------HHHc---CCCEEEEeCcccc
Confidence 665532 2234 8888888766554
No 328
>PRK14873 primosome assembly protein PriA; Provisional
Probab=41.88 E-value=1.1e+02 Score=38.12 Aligned_cols=76 Identities=21% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-C-CCeEEeecCCcchhhHHHHH-HHcCCCccEEEEcCCC
Q 002898 337 GKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-G-IPHNVLNARPKYAAREAETV-AQAGRKYAITISTNMA 413 (869)
Q Consensus 337 ~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~-g-i~~~vLna~~~~~~~Ea~Ii-a~AG~~g~VTIATnmA 413 (869)
.|-+..++.+.+....|+.|||.++.+.....+.+.|++. | -++.++|++....++-..-. ...| ...|.|-|..|
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IViGtRSA 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVVGTRSA 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEEEccee
Confidence 4555566667777788999999999999999999999875 3 57889999754444443322 3555 34677877654
No 329
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=41.85 E-value=37 Score=38.69 Aligned_cols=57 Identities=32% Similarity=0.268 Sum_probs=36.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHH----HcCCc----EEEEecCHHHHHHHH-HHHHHHhhhcCCeEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNA----LTGEG----VHVVTVNDYLAQRDA-EWMERVHRFLGLSVG 75 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A----L~G~~----V~VvT~ndyLA~RDa-e~~~~ly~~LGLsv~ 75 (869)
|+--..|.|||+.++-..+..| |.|.. --|+.+|-+|-+-+. +.+.+++..+||+.+
T Consensus 93 ~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 93 ILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred EEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 4456789999986554444332 45521 135555555655554 448899999999976
No 330
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=41.84 E-value=32 Score=42.02 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=36.6
Q ss_pred eEEecCCCcHHHHHHHHHH-HH-----HHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 19 IAEMKTGEGKTLVSTLAAY-LN-----ALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~-l~-----AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
|+|=.-|+|||.+|+=-++ |. -|++++|.|+.||..++.= ...+.=.||..
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleY----is~VLPeLGe~ 286 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEY----ISRVLPELGEE 286 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHH----HHHhchhhccC
Confidence 7888899999987665443 21 3567889999999988753 44555566655
No 331
>PRK05595 replicative DNA helicase; Provisional
Probab=41.49 E-value=1.1e+02 Score=35.94 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=60.6
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecC---HHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHH
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVN---DYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERR 87 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~n---dyLA~RDae~~~~ly~~LGLsv~~i~-~~~~~~~rk 87 (869)
..|. |.=..||-|||..++--+.-.|+ .|++|.+++.- +.|+.|-.. ...|++...+. +.++..+..
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a------~~~~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLC------SEANVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHH------HhcCCCHHHHhcCCCCHHHHH
Confidence 3455 56778999999866555542354 58999888764 455555322 22344433222 223333221
Q ss_pred hc-------cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 88 SN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 88 ~a-------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
.. -...+-.-....+..+.++..+..- .... +++++|||=..-|
T Consensus 273 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~---~~~~---~~~~vvIDylql~ 323 (444)
T PRK05595 273 NIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRL---KIEH---GIDMILIDYLQLM 323 (444)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEeHHHhc
Confidence 11 1124444445556677777665421 1123 7899999977644
No 332
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=41.08 E-value=1.5e+02 Score=33.79 Aligned_cols=91 Identities=22% Similarity=0.243 Sum_probs=52.1
Q ss_pred chhhHHHHHH-H--h-----CCC-eEEecCCCcH---HHHHHHHHHHHHHcCCcEEEEec-CHHHHHH-HHHHHHHHhhh
Q 002898 4 FDVQIIGGAV-L--H-----DGS-IAEMKTGEGK---TLVSTLAAYLNALTGEGVHVVTV-NDYLAQR-DAEWMERVHRF 69 (869)
Q Consensus 4 ~dvQl~g~~~-L--~-----~G~-IaEm~TGEGK---TLva~lpa~l~AL~G~~V~VvT~-ndyLA~R-Dae~~~~ly~~ 69 (869)
+|+|.++=+. + + +|. |+-+-+|-|| +.++-=-+.+.+..|..|.+++| -.|.-.. ..++...+...
T Consensus 148 HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 227 (335)
T PRK04523 148 HPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAE 227 (335)
T ss_pred ChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHH
Confidence 7899888653 2 1 232 5556777876 23322222234567999999999 4442211 12334445566
Q ss_pred cCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002898 70 LGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (869)
Q Consensus 70 LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~ 99 (869)
.|.++.... ++ ....-++||+|.+.
T Consensus 228 ~g~~~~~~~---d~--~ea~~~aDvvy~~~ 252 (335)
T PRK04523 228 SGGSLTVSH---DI--DSAYAGADVVYAKS 252 (335)
T ss_pred cCCeEEEEc---CH--HHHhCCCCEEEece
Confidence 677665421 22 23455799999976
No 333
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=40.90 E-value=16 Score=39.85 Aligned_cols=44 Identities=41% Similarity=0.691 Sum_probs=38.9
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|-.||.|+ |||| ||-.||....-|..+||=+|+++-|
T Consensus 171 Gaev~A~G~i~v~g~-----------lrG~a~AG~~g~~~a~I~~~~~~~elv~IaG 216 (248)
T PRK04596 171 GAEVIADGSIHIYGT-----------LRGRALAGAQGNPDARIFCRDFHAELVAIAG 216 (248)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeecCCccEEEEcc
Confidence 467888999999998 4555 7999999999999999999999877
No 334
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=40.69 E-value=39 Score=35.99 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=26.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE-ecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV-TVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv-T~ndyLA~RDae~~~~ly~~LGLs 73 (869)
+.-=..|.|||.++-..+ +.+....+.++ ..+..+... +-+..+...+|++
T Consensus 47 ~l~G~~G~GKTtl~~~l~--~~l~~~~~~~~~~~~~~~~~~--~~l~~i~~~lG~~ 98 (269)
T TIGR03015 47 LITGEVGAGKTTLIRNLL--KRLDQERVVAAKLVNTRVDAE--DLLRMVAADFGLE 98 (269)
T ss_pred EEEcCCCCCHHHHHHHHH--HhcCCCCeEEeeeeCCCCCHH--HHHHHHHHHcCCC
Confidence 566789999997655432 44542233221 122222222 3355666777776
No 335
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=40.53 E-value=32 Score=37.16 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=23.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G~~V~Vv 49 (869)
|+ -|-|.|||.+++=.|+..|. .|++|.||
T Consensus 7 v~-~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 7 IY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred EE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 46 48999999877766666676 59999988
No 336
>PLN02229 alpha-galactosidase
Probab=40.36 E-value=1.3e+02 Score=35.39 Aligned_cols=117 Identities=11% Similarity=0.113 Sum_probs=69.1
Q ss_pred HHHHHHHhccCcceEEECCeEEE--EeCCCCcccccc-ccChhhhHHHHh------hhCCccccCcceeeeeeehhHhhh
Q 002898 217 ALKAKEFYRRDVQYIVRNGKALI--INELTGRVEEKR-RWSEGIHQAVEA------KEGLKIQADSVVVAQITYQSLFKL 287 (869)
Q Consensus 217 Al~A~~l~~~d~dYiV~d~~I~i--vDe~TGR~~~gr-~ws~GLHQaiea------KEgv~i~~e~~t~a~It~q~~Fr~ 287 (869)
++.+..+-.-+.+|++-|+.=.- -| ..|+++++. +|.+|+...... |-|+-..+...|++
T Consensus 88 ~~v~~Gl~~~Gy~yv~iDDgW~~~~rd-~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~---------- 156 (427)
T PLN02229 88 ALVSTGLADLGYIHVNIDDCWSNLKRD-SKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQ---------- 156 (427)
T ss_pred HHHHhHHHhCCCEEEEEcCCcCCCCcC-CCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccC----------
Confidence 44445555668899887652211 23 369999975 799998775444 34555566666665
Q ss_pred cCcccccCCCcccHHHH--HHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEE-ec
Q 002898 288 YPKLSGMTGTAKTEEKE--FLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG-ST 361 (869)
Q Consensus 288 Y~kL~GmTGTa~te~~E--f~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~-t~ 361 (869)
|..|+.+.|+.. ...-.|+|++.+=---. +. ....+.+.++-+.+ .+.|||++.- |+
T Consensus 157 -----~~pGS~g~e~~DA~~fA~WGVDylK~D~C~~-------~~--~~~~~~y~~m~~AL---~~tGRpI~~SlC~ 216 (427)
T PLN02229 157 -----VRPGSLFHEVDDADIFASWGVDYLKYDNCYN-------LG--IKPIERYPPMRDAL---NATGRSIFYSLCE 216 (427)
T ss_pred -----CCCCCccHHHHHHHHHHHcCCCEEEecCCCC-------CC--cchhHHHHHHHHHH---HhhCCCcEEEecC
Confidence 457888776533 34568999987622100 00 11234455544444 3679997655 54
No 337
>PRK07952 DNA replication protein DnaC; Validated
Probab=40.27 E-value=34 Score=37.11 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=25.4
Q ss_pred CeEEecCCCcHHH-HHHHHHHHHHHcCCcEEEEecCHHH
Q 002898 18 SIAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDYL 55 (869)
Q Consensus 18 ~IaEm~TGEGKTL-va~lpa~l~AL~G~~V~VvT~ndyL 55 (869)
-+.-=.+|.|||. +.++...+ .-.|+.|.++|..+-+
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l-~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNEL-LLRGKSVLIITVADIM 139 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEEHHHHH
Confidence 3666679999995 55555543 3468999888765443
No 338
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=40.27 E-value=1.3e+02 Score=32.46 Aligned_cols=54 Identities=26% Similarity=0.446 Sum_probs=42.6
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCc---EEEEecchhhHHHHHHHHHHCCCCeEEeec
Q 002898 332 FATARGKWEYARQEVESMFRLGRP---VLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (869)
Q Consensus 332 ~~t~~~K~~aii~ei~~~~~~grP---VLV~t~Si~~SE~ls~~L~~~gi~~~vLna 385 (869)
+.+..+....|+++|.+....|-| |-|.|++-..+..+++.|.+.|||+.+...
T Consensus 53 ~~~~~~e~~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~~~~~~ 109 (351)
T PF13361_consen 53 FDNEEEEAEYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPYRISGS 109 (351)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-EEESSS
T ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhcceeEeccc
Confidence 556677778899999987655544 999999999999999999999999865443
No 339
>PRK08116 hypothetical protein; Validated
Probab=40.26 E-value=31 Score=37.78 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=23.3
Q ss_pred CeEEecCCCcHHHHHH-HHHHHHHHcCCcEEEEecCHHH
Q 002898 18 SIAEMKTGEGKTLVST-LAAYLNALTGEGVHVVTVNDYL 55 (869)
Q Consensus 18 ~IaEm~TGEGKTLva~-lpa~l~AL~G~~V~VvT~ndyL 55 (869)
-+.-=.+|.|||..+. +.-.+.. .|..|.+++.++.+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~~~ll 154 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNFPQLL 154 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHHHHH
Confidence 3566679999996443 3333222 37888877765544
No 340
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=40.06 E-value=86 Score=39.15 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=33.2
Q ss_pred hhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEE
Q 002898 554 VKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM 593 (869)
Q Consensus 554 V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~ 593 (869)
.--.|+-|||.-..--+.=+|+|...||-|.|......-|
T Consensus 777 lnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 777 LNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred eeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 3334678999999999999999999999999988765544
No 341
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.04 E-value=51 Score=42.23 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.4
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
++.++||||||.|-
T Consensus 119 k~KViIIDEAh~LT 132 (944)
T PRK14949 119 RFKVYLIDEVHMLS 132 (944)
T ss_pred CcEEEEEechHhcC
Confidence 68999999999973
No 342
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=40.01 E-value=1.3e+02 Score=34.12 Aligned_cols=57 Identities=9% Similarity=0.184 Sum_probs=35.0
Q ss_pred CeEEECC----CchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHH
Q 002898 93 DITYTNN----SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAEL 168 (869)
Q Consensus 93 DI~YgT~----~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~ 168 (869)
|+.+..+ ..++.|-+|+-...-.....+. +.+++|||+||.|- -..++.+.+.
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~---~~kV~iI~~ae~m~--------------------~~AaNaLLKt 131 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLN---GYRLFVIEPADAMN--------------------ESASNALLKT 131 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccC---CceEEEecchhhhC--------------------HHHHHHHHHH
Confidence 5655543 2466777775321111112233 78999999999983 1367888899
Q ss_pred cccC
Q 002898 169 LVQG 172 (869)
Q Consensus 169 l~~~ 172 (869)
|+++
T Consensus 132 LEEP 135 (319)
T PRK06090 132 LEEP 135 (319)
T ss_pred hcCC
Confidence 9764
No 343
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=39.75 E-value=1e+02 Score=31.99 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=24.1
Q ss_pred CCCeEEe--cCCCcHHHHHHHHHHHHHHcC------CcEEEEecC
Q 002898 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTG------EGVHVVTVN 52 (869)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~lpa~l~AL~G------~~V~VvT~n 52 (869)
.|.+.++ .+|.|||..+...+...+..| .+|..++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 4665554 689999987776665444565 566655554
No 344
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=39.73 E-value=50 Score=29.83 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.7
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
.+++||+|.|.+-..|...+..|++.|+....|.++
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG 94 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGG 94 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCc
Confidence 568999999999999999999999999985556553
No 345
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=39.46 E-value=17 Score=39.58 Aligned_cols=44 Identities=36% Similarity=0.608 Sum_probs=40.0
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|=.||.|+ |||| ||-+||....-|..+||=+++++-|
T Consensus 172 GAEViAdGnIhVyG~-----------LRGrA~AGa~Gd~~ArIf~~~l~aelvsIAg 217 (249)
T PRK00339 172 GAELLADGNIHVYGP-----------MRGRALAGIKGDTKARIFCQQLEAELVSIAG 217 (249)
T ss_pred CCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCccEEEEcc
Confidence 568889999999998 6787 6999999999999999999999866
No 346
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=39.46 E-value=83 Score=38.08 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=36.5
Q ss_pred eEEecCCCcHHH-HHHHHHH---HHHHcCCcEEEEecCHHHHHHHHHHHHHHhh
Q 002898 19 IAEMKTGEGKTL-VSTLAAY---LNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~---l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~ 68 (869)
+..|.-|-|||- +|++..| ++...|.++.|+.+|..=|..-+..++....
T Consensus 90 fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~mv~ 143 (546)
T COG4626 90 FIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDMVK 143 (546)
T ss_pred EEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHHHH
Confidence 688999999984 5556555 2345688999999999888876666665444
No 347
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=39.42 E-value=1.2e+02 Score=35.13 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=62.8
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEe---cCHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHH
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVT---VNDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEER 86 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT---~ndyLA~RDae~~~~ly~~LGLsv~~i~-~~~~~~~r 86 (869)
+..|. |.=..+|.|||..++-.+.-.|+ .|.+|.+++ +.+.|+.|-.. ...|++...+. +.++.++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~------~~~~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLA------SKSGINTGNIRTGRFNDSDF 264 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHH------HHcCCCHHHHhcCCCCHHHH
Confidence 34566 66678999999766555543453 588998887 34555554322 23455443322 23333322
Q ss_pred H-------hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 87 R-------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 87 k-------~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
. .....++.+...+.+..+.++..+.. ...+ ..+++++|||=.+.|
T Consensus 265 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~----~~~~-~~~~~lvvIDyLql~ 317 (421)
T TIGR03600 265 NRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARR----IKRK-KGGLDLIVVDYIQLM 317 (421)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH----HHHh-cCCCCEEEEeccccc
Confidence 1 11234566666666777778765432 1111 115789999965554
No 348
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.37 E-value=1.1e+02 Score=36.15 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=39.7
Q ss_pred CCCcHHHH-HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCH
Q 002898 24 TGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIP 83 (869)
Q Consensus 24 TGEGKTLv-a~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~ 83 (869)
-|+|||.+ +=|+.|+.- .|+.|.+|+.--|=.- -.+++..+.+..|+.+--...+.+|
T Consensus 109 QGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpA-A~eQL~~La~q~~v~~f~~~~~~~P 167 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPA-AIEQLKQLAEQVGVPFFGSGTEKDP 167 (451)
T ss_pred cCCChHhHHHHHHHHHHH-cCCceEEEecccCChH-HHHHHHHHHHHcCCceecCCCCCCH
Confidence 59999975 556666655 9999999887655322 2367778888888887655334433
No 349
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=38.96 E-value=19 Score=38.76 Aligned_cols=29 Identities=28% Similarity=0.176 Sum_probs=22.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|++ |-|.|||.+++-.|+..|..| +|.+|
T Consensus 7 v~~-KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 7 IYG-KGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred EEC-CCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 453 889999987777776667788 88776
No 350
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=38.69 E-value=24 Score=39.05 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=26.3
Q ss_pred HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 86 rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|..+-.|||++++.+-|--+..|..+. ..+ +..++||||||.+
T Consensus 206 r~~~~~Adivi~ny~yll~~~~r~~~~-----~~l----~~~~lIiDEAHnL 248 (289)
T smart00489 206 RKAIEFANVVVLPYQYLLDPKIRQALS-----IEL----KDSIVIFDEAHNL 248 (289)
T ss_pred HHHhhcCCEEEECHHHHhcHHHHHHhc-----ccc----cccEEEEeCccCh
Confidence 555677999987775432222232211 111 4689999999996
No 351
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=38.69 E-value=24 Score=39.05 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=26.3
Q ss_pred HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 86 RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 86 rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|..+-.|||++++.+-|--+..|..+. ..+ +..++||||||.+
T Consensus 206 r~~~~~Adivi~ny~yll~~~~r~~~~-----~~l----~~~~lIiDEAHnL 248 (289)
T smart00488 206 RKAIEFANVVVLPYQYLLDPKIRQALS-----IEL----KDSIVIFDEAHNL 248 (289)
T ss_pred HHHhhcCCEEEECHHHHhcHHHHHHhc-----ccc----cccEEEEeCccCh
Confidence 555677999987775432222232211 111 4689999999996
No 352
>PRK11823 DNA repair protein RadA; Provisional
Probab=38.68 E-value=1.2e+02 Score=35.92 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=49.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEEC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTN 98 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT 98 (869)
+.-=.+|.|||..+.-.+...+-.|.+|..++..+-.. ++..-.+.||+... .+.+..
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~-----qi~~ra~rlg~~~~-----------------~l~~~~ 141 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESAS-----QIKLRAERLGLPSD-----------------NLYLLA 141 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHH-----HHHHHHHHcCCChh-----------------cEEEeC
Confidence 44557999999866665554455688888888654332 22222345555311 022222
Q ss_pred CCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh
Q 002898 99 NSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (869)
Q Consensus 99 ~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (869)
... ++.|...+. .. +.+++|||++..+..+
T Consensus 142 e~~--l~~i~~~i~-------~~---~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 142 ETN--LEAILATIE-------EE---KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCC--HHHHHHHHH-------hh---CCCEEEEechhhhccc
Confidence 222 344443321 12 6789999999887643
No 353
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=38.42 E-value=1.7e+02 Score=33.93 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=57.6
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEec---CHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHH
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTV---NDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERR 87 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~---ndyLA~RDae~~~~ly~~LGLsv~~i~-~~~~~~~rk 87 (869)
..|. ++-..||.|||..+.=-++-.|. .|.+|.+++. .+.++.|-. -...|++...+. +.++.++..
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~------~~~~~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRML------SSESRVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHH------HHhcCCCHHHhccCCCCHHHHH
Confidence 3455 67788999999766655543355 5888887764 234444321 122344433322 234443221
Q ss_pred -------hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 88 -------SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 88 -------~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
......+..-....+..+.++..+..- .... +++++|||=...|
T Consensus 267 ~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~---~~~~---~~~~vvID~l~~i 317 (434)
T TIGR00665 267 KLTSAAGKLSEAPLYIDDTPGLTITELRAKARRL---KREH---GLGLIVIDYLQLM 317 (434)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHhc
Confidence 111223332233445567777655321 1112 6889999966544
No 354
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.28 E-value=33 Score=38.86 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=25.3
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA 56 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA 56 (869)
|=|-|||-+++-.|+..|-.|++|++|+.-....
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 3699998765555656788899899998765543
No 355
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.24 E-value=46 Score=40.95 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=20.8
Q ss_pred hhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 102 LGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 102 ~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
.+.|-+|+-+..-....++. +..++||||||.|
T Consensus 101 ~~vd~IReii~~a~~~p~~~---~~KViIIDEad~L 133 (620)
T PRK14948 101 TGVDNIRELIERAQFAPVQA---RWKVYVIDECHML 133 (620)
T ss_pred CCHHHHHHHHHHHhhChhcC---CceEEEEECcccc
Confidence 45677776553221112334 6789999999986
No 356
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.23 E-value=46 Score=30.83 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=50.3
Q ss_pred cccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEe-ChhHHHHHHHHHHHHHHhcCCcEEEE---ecchhh
Q 002898 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMFRLGRPVLVG---STSVEN 365 (869)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~-t~~~K~~aii~ei~~~~~~grPVLV~---t~Si~~ 365 (869)
.+.|+...-....+.+.+.|+.+ ...+.........+|.++. +.......++..+ .+.|.+|++= +.|.++
T Consensus 27 ~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~---l~~g~~v~~EKP~~~~~~~ 101 (120)
T PF01408_consen 27 EVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPPSSHAEIAKKA---LEAGKHVLVEKPLALTLEE 101 (120)
T ss_dssp EEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSGGGHHHHHHHH---HHTTSEEEEESSSSSSHHH
T ss_pred EEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCCcchHHHHHHH---HHcCCEEEEEcCCcCCHHH
Confidence 34455555444556677777777 3333222222234555554 3333333444333 4567788884 677888
Q ss_pred HHHHHHHHHHCCCCeEE
Q 002898 366 SEYLSDLLKQQGIPHNV 382 (869)
Q Consensus 366 SE~ls~~L~~~gi~~~v 382 (869)
++.+.+..++.|....|
T Consensus 102 ~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 102 AEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 88888888887776543
No 357
>PF12846 AAA_10: AAA-like domain
Probab=38.19 E-value=73 Score=33.96 Aligned_cols=36 Identities=22% Similarity=0.087 Sum_probs=24.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
++-=.||.|||.++...+.-.+..|..|.|+=+...
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 344579999997766555545567888888855533
No 358
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.00 E-value=75 Score=38.59 Aligned_cols=52 Identities=29% Similarity=0.243 Sum_probs=30.8
Q ss_pred cCCCcHHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 23 KTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~--G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.||.|||-++...+...+.. |+.|.+++...|=.- -.+++......+|+.+.
T Consensus 358 PtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRig-A~EQLk~ya~iLgv~v~ 411 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG-GREQLHSYGRQLGIAVH 411 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccccc-HHHHHHHhhcccCceeE
Confidence 49999997654444434444 578999987544221 12444444566676654
No 359
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.90 E-value=57 Score=37.88 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=11.3
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..+++|||+|++
T Consensus 92 ~~~vL~IDEi~~l 104 (413)
T PRK13342 92 RRTILFIDEIHRF 104 (413)
T ss_pred CceEEEEechhhh
Confidence 5679999999986
No 360
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=37.71 E-value=40 Score=36.69 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=24.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
+..-+-|.|||.+++..+...+..|+.|+++-
T Consensus 7 i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD 38 (241)
T PRK13886 7 VLQGKGGVGKSFIAATIAQYKASKGQKPLCID 38 (241)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45567899999866665554677899999884
No 361
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.34 E-value=42 Score=41.71 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.5
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||||.|
T Consensus 118 k~KV~IIDEVh~L 130 (702)
T PRK14960 118 RFKVYLIDEVHML 130 (702)
T ss_pred CcEEEEEechHhc
Confidence 6789999999975
No 362
>PRK11670 antiporter inner membrane protein; Provisional
Probab=37.17 E-value=38 Score=38.90 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=28.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
|+--+-|+|||.+++-.|+..|-.|++|.+|=-..+
T Consensus 112 V~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~q 147 (369)
T PRK11670 112 VSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIY 147 (369)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 556678999998877777767888999988865444
No 363
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=36.97 E-value=53 Score=42.17 Aligned_cols=120 Identities=20% Similarity=0.369 Sum_probs=69.0
Q ss_pred CCCchhhHHHHHH-HhCCC---eEEecCCCcHHH-HHHHHHHHHHHcC--CcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 1 MRHFDVQIIGGAV-LHDGS---IAEMKTGEGKTL-VSTLAAYLNALTG--EGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 1 ~rp~dvQl~g~~~-L~~G~---IaEm~TGEGKTL-va~lpa~l~AL~G--~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
+++|....+=-++ |.+|+ |.-=.+|=|||+ +..+.+||.--.+ .+-.||+|+..|.. |--.|-.+ .=|
T Consensus 395 Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N----W~~Ef~kW-aPS 469 (1157)
T KOG0386|consen 395 LKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN----WSSEFPKW-APS 469 (1157)
T ss_pred CchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC----chhhcccc-ccc
Confidence 3556555444443 45666 444468999998 6777788654433 24579999999875 54444333 345
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
+..|...-+|++|+.-. +.+|+..| ++|+-. .+ .+.... .-.|.||||-|.|
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTt-----yEyiik----dk-~lLsKI--~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTT-----YEYIIK----DK-ALLSKI--SWKYMIIDEGHRM 527 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeee-----HHHhcC----CH-HHHhcc--CCcceeecccccc
Confidence 55555555677765322 24566444 334421 11 111110 4579999999975
No 364
>PRK04195 replication factor C large subunit; Provisional
Probab=36.70 E-value=80 Score=37.44 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.8
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
+..++||||||.+.
T Consensus 98 ~~kvIiIDEaD~L~ 111 (482)
T PRK04195 98 RRKLILLDEVDGIH 111 (482)
T ss_pred CCeEEEEecCcccc
Confidence 56799999999864
No 365
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=36.38 E-value=43 Score=34.83 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=23.2
Q ss_pred cCCCcHHHHHHHHHHHHHH-cCCcEEEEecCH
Q 002898 23 KTGEGKTLVSTLAAYLNAL-TGEGVHVVTVND 53 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL-~G~~V~VvT~nd 53 (869)
+-|+|||.+++-.|+..|. .|+.|.+|-.+.
T Consensus 44 kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 44 LPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 5799999876655554564 699999987764
No 366
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=36.26 E-value=42 Score=34.34 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=24.8
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQ 57 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~ 57 (869)
.+|+|||..+-..+......|.+|.++...+|.--
T Consensus 7 ~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 58999997655444434456888999988877653
No 367
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=36.05 E-value=63 Score=30.05 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCcEEEEecchhhH-HHHHHHHHHCCCCe---EEeec
Q 002898 343 RQEVESMFRLGRPVLVGSTSVENS-EYLSDLLKQQGIPH---NVLNA 385 (869)
Q Consensus 343 i~ei~~~~~~grPVLV~t~Si~~S-E~ls~~L~~~gi~~---~vLna 385 (869)
.+-+....+.|.|+.+.|++-..+ +.+++.|+..|++. +++++
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts 66 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITS 66 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEECh
Confidence 455556667899999999998777 88999999999974 34544
No 368
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.44 E-value=42 Score=41.36 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.3
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
+++++||||||.|-
T Consensus 124 ~~KV~IIDEvh~Ls 137 (618)
T PRK14951 124 RFKVFMIDEVHMLT 137 (618)
T ss_pred CceEEEEEChhhCC
Confidence 68999999999863
No 369
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=35.23 E-value=22 Score=38.54 Aligned_cols=44 Identities=34% Similarity=0.623 Sum_probs=39.0
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|-.||.|+ |||| ||-+||....-|..+||=+|+++-|
T Consensus 156 GAev~A~G~i~v~G~-----------lrG~a~AG~~Gd~~A~If~~~l~aelvsIag 201 (235)
T PRK04516 156 GAELIADGNIHIYAP-----------MRGRALAGAKGDTSARIFIHSMQAELVSVAG 201 (235)
T ss_pred CCEEEeCCCEEEEEE-----------ccceEEecCCCCCccEEEeccCCccEEEEcc
Confidence 468889999999998 4565 7999999999999999999999876
No 370
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=34.83 E-value=88 Score=32.69 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=25.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~nd 53 (869)
++.=.+|+|||+.+.=-++-.+.. |.+|..+|..+
T Consensus 23 li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 23 LISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred EEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 677789999998766555546677 99998888744
No 371
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=34.79 E-value=86 Score=31.84 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=44.8
Q ss_pred EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEe
Q 002898 332 FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVL 383 (869)
Q Consensus 332 ~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~----~gi~~~vL 383 (869)
+.+...+...++..+.+...+|..|+|.|.+.+.++.|-+.|=. .-|||...
T Consensus 8 hL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~ 63 (154)
T PRK06646 8 QTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSK 63 (154)
T ss_pred EeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34777888999999999999999999999999999999999954 35888754
No 372
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.66 E-value=40 Score=36.93 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=25.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
+.--+=|+|||.+++..|...|-.|++|.++=.
T Consensus 62 V~S~kgGvGKStva~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 62 VTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 344567999999888888778889977777643
No 373
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=34.55 E-value=1.3e+02 Score=37.56 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=42.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
++.+.=|-|||-+..+.+...+. .|..|.+..++..-|.--.+.+..+++.+|
T Consensus 191 V~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg 244 (752)
T PHA03333 191 AATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQ 244 (752)
T ss_pred EEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhc
Confidence 88899999999766544333333 688888888988989888999999998776
No 374
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.03 E-value=44 Score=40.16 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.9
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
++.++||||||.|
T Consensus 119 ~~kV~iIDE~~~l 131 (509)
T PRK14958 119 RFKVYLIDEVHML 131 (509)
T ss_pred CcEEEEEEChHhc
Confidence 6899999999986
No 375
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=33.94 E-value=62 Score=38.95 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=25.3
Q ss_pred chhhHHHHHHH-----hCCC-eEEecCCCcHHHH--HHHHHHHHHHc
Q 002898 4 FDVQIIGGAVL-----HDGS-IAEMKTGEGKTLV--STLAAYLNALT 42 (869)
Q Consensus 4 ~dvQl~g~~~L-----~~G~-IaEm~TGEGKTLv--a~lpa~l~AL~ 42 (869)
||-|..=..-+ .+|+ +.||.+|.|||.+ ++..+|.....
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 56666544433 2577 9999999999964 45555544443
No 376
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=33.26 E-value=79 Score=34.75 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=45.8
Q ss_pred CCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCC
Q 002898 327 LPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIP 379 (869)
Q Consensus 327 ~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~ 379 (869)
.-|.+|.+..+=|++ ++.+.+..+.|-.+.++++++++++.+...|++.|+-
T Consensus 163 ~vDav~LDmp~PW~~-le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 163 DVDAVFLDLPDPWNV-LEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred ccCEEEEcCCChHHH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 447899999999986 6677777888999999999999999999999999864
No 377
>PRK06526 transposase; Provisional
Probab=33.16 E-value=31 Score=37.61 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=24.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYL 55 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyL 55 (869)
+.-=.+|.|||..+.-.+.-.+-.|..|..+|.++.+
T Consensus 102 ll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~ 138 (254)
T PRK06526 102 VFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWV 138 (254)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHH
Confidence 5666899999965444343234578888887776543
No 378
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=32.94 E-value=1e+02 Score=31.02 Aligned_cols=66 Identities=20% Similarity=0.078 Sum_probs=42.5
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCC--CeEEeecCCcchhhHHHHHH-HcCCCccEEEEcC--CCcCCccee
Q 002898 352 LGRPVLVGSTSVENSEYLSDLLKQQGI--PHNVLNARPKYAAREAETVA-QAGRKYAITISTN--MAGRGTDII 420 (869)
Q Consensus 352 ~grPVLV~t~Si~~SE~ls~~L~~~gi--~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATn--mAGRGTDIk 420 (869)
.+-.+||||+|-+..+.+.+.++..+. ...++..+ ....+..+-. +. ..+.|.+|+. -..=|+|++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~--~~~~~~~l~~~~~-~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQG--SKSRDELLEEFKR-GEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEEST--CCHHHHHHHHHCC-SSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeecC--cchHHHHHHHHHh-ccCeEEEEEecccEEEeecCC
Confidence 346799999999999999999887642 22344332 1233323333 34 3789999998 888999998
No 379
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=32.84 E-value=1.8e+02 Score=33.18 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=44.8
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002898 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (869)
Q Consensus 42 ~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~ 99 (869)
.|+++.|++++-.-|++-++.+... ..++.+..+.+.++..+|...-..+|+.+|.
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTd 326 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAMQFDILLGTS 326 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhccCCEEEEec
Confidence 5788999999998888777777652 2356778888889888887777889999997
No 380
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=32.72 E-value=59 Score=35.76 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.3
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+.+++||||+|.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 5689999999986
No 381
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.53 E-value=1.3e+02 Score=34.13 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=60.6
Q ss_pred ccccccCh--hhhHHHHh-hhCCccccCcceeeeeeehhHhhhcC------cccccCCCccc-HHHHHHHHhCCCeEEeC
Q 002898 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP------KLSGMTGTAKT-EEKEFLKMFQMPVIEVP 317 (869)
Q Consensus 248 ~~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~It~q~~Fr~Y~------kL~GmTGTa~t-e~~Ef~~iY~l~vv~IP 317 (869)
.|+-+|+| ||--|=|| ||-| +--|-|..||.--+ .|+|=-||.++ -++-...--|-.++.|.
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAV--------ILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAV--------ILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhe--------eecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 57899998 88776665 4543 23466777774222 68899999988 34444444454455554
Q ss_pred CCCCcccccCCCeEEeChhHHH----HHHHHHHHHHHhcCCcEEEEecch
Q 002898 318 TNLPNIRVDLPIQSFATARGKW----EYARQEVESMFRLGRPVLVGSTSV 363 (869)
Q Consensus 318 t~~p~~R~d~~d~i~~t~~~K~----~aii~ei~~~~~~grPVLV~t~Si 363 (869)
+ .+.-.|| ..++..+-++.+...|-+||..-|
T Consensus 199 S--------------SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEi 234 (439)
T KOG0739|consen 199 S--------------SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEI 234 (439)
T ss_pred h--------------HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehh
Confidence 3 2233566 356777777888889999986543
No 382
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.48 E-value=69 Score=38.46 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.4
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||+|.+
T Consensus 116 ~~kVVIIDEad~l 128 (504)
T PRK14963 116 GRKVYILDEAHMM 128 (504)
T ss_pred CCeEEEEECcccc
Confidence 6789999999975
No 383
>PHA02535 P terminase ATPase subunit; Provisional
Probab=32.38 E-value=2.1e+02 Score=35.09 Aligned_cols=117 Identities=20% Similarity=0.154 Sum_probs=67.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhh-cCCeEEEEcCCCCHHHHHhccCCCeEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRF-LGLSVGLIQRGMIPEERRSNYRCDITY 96 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~-LGLsv~~i~~~~~~~~rk~aY~~DI~Y 96 (869)
++.-.==-|||-.++.-|+..|| .|+.+..+.+|...|.-=.+-+..+... +|+... + -.|++
T Consensus 157 ~ilKSRQiG~T~~fA~EA~~dal~~G~nqiflSas~~QA~~f~~yi~~~a~~~~~v~l~---~------------~~I~f 221 (581)
T PHA02535 157 NILKSRQIGATYYFAREALEDALLTGRNQIFLSASKAQAHVFKQYIIAFAREAADVELT---G------------DPIIL 221 (581)
T ss_pred eEeeecccchHHHHHHHHHHHHHhcCCceEEECCCHHHHHHHHHHHHHHHHhhcCceee---c------------ceEEe
Confidence 55555557999998888887776 5889999999998887544444444332 454221 1 12666
Q ss_pred ECCCchhhhHHHHhhccchhhhhccCCCCceEEEeech----h---------hhhhhcCCCceeecCCCCCCcccHH
Q 002898 97 TNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEV----D---------SVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 97 gT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEv----D---------siLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
.+.+++-| | ..++ ...+. -...+++||+ | -|+++....-.++|-|.......|+
T Consensus 222 ~nGa~I~f--L----stn~-~taqg---~~G~vylDE~aw~~d~~~l~k~a~ama~~~~~r~t~fSTPs~~~h~aY~ 288 (581)
T PHA02535 222 PNGAELHF--L----GTNA-NTAQS---YHGNVYFDEYFWIPKFQELNKVASGMATHKHWRKTYFSTPSSKTHEAYP 288 (581)
T ss_pred cCCCEEEE--e----cCCC-ccccc---cCCCEEEEehhccCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCcccch
Confidence 65555432 2 1111 11221 2235999998 2 2444444444566766666555665
No 384
>PRK01973 septum formation inhibitor; Reviewed
Probab=32.31 E-value=26 Score=38.79 Aligned_cols=44 Identities=34% Similarity=0.586 Sum_probs=39.2
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|=.||.|+ |||| ||-+||....-|..+||=+++++-|
T Consensus 191 GAEviA~GnI~V~G~-----------lrGra~AG~~Gd~~A~If~~~l~aelvsIAg 236 (271)
T PRK01973 191 GAEVIAEGNIHIYAP-----------LRGRALAGVHGNHDARIFCTCLEPELISIAG 236 (271)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCCcEEEECc
Confidence 568889999999998 5565 7999999999999999999999876
No 385
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=32.14 E-value=71 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=14.0
Q ss_pred CceEEEeechhhhhhh
Q 002898 125 PFHFAIVDEVDSVLID 140 (869)
Q Consensus 125 ~~~~aIVDEvDsiLiD 140 (869)
+..++||||||.|-.|
T Consensus 109 ~~kviiidead~mt~~ 124 (325)
T COG0470 109 GYKVVIIDEADKLTED 124 (325)
T ss_pred CceEEEeCcHHHHhHH
Confidence 7899999999999654
No 386
>PRK09183 transposase/IS protein; Provisional
Probab=32.06 E-value=56 Score=35.56 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=23.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
+.-=.+|.|||..+...+......|..|..++.++.
T Consensus 106 ~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 106 VLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 334479999996554444434467888887775543
No 387
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=32.04 E-value=44 Score=35.62 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=30.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWME 64 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~ 64 (869)
++.=.+|.|||+.+.--++-.+..|.+|..||.. +-+.+-.+.|.
T Consensus 25 lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e-e~~~~i~~~~~ 69 (237)
T TIGR03877 25 LLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE-EHPVQVRRNMA 69 (237)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee-CCHHHHHHHHH
Confidence 6677899999987766666455679999888863 44444444443
No 388
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=31.99 E-value=61 Score=36.16 Aligned_cols=70 Identities=24% Similarity=0.447 Sum_probs=39.8
Q ss_pred ccccCCCcccH-HHHHHHHhCCCeE-----------EeCCCCCcccc--cCCC---------eEEeChhHHHHHHHHHHH
Q 002898 291 LSGMTGTAKTE-EKEFLKMFQMPVI-----------EVPTNLPNIRV--DLPI---------QSFATARGKWEYARQEVE 347 (869)
Q Consensus 291 L~GmTGTa~te-~~Ef~~iY~l~vv-----------~IPt~~p~~R~--d~~d---------~i~~t~~~K~~aii~ei~ 347 (869)
++|.||+.+|. +.++.+.++..++ .|=|++|..-. ..|. ..| +..+......+.|.
T Consensus 4 i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~-~v~~f~~~a~~~i~ 82 (287)
T TIGR00174 4 IMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESY-SAADFQTLALNAIA 82 (287)
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheE-cHHHHHHHHHHHHH
Confidence 68999999985 5667777765544 34566776321 1111 111 22233344455556
Q ss_pred HHHhcCC-cEEEEec
Q 002898 348 SMFRLGR-PVLVGST 361 (869)
Q Consensus 348 ~~~~~gr-PVLV~t~ 361 (869)
+.+++|+ |||||-+
T Consensus 83 ~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 83 DITARGKIPLLVGGT 97 (287)
T ss_pred HHHhCCCCEEEEcCc
Confidence 6666665 8888744
No 389
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=31.98 E-value=39 Score=41.77 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=57.9
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEEC
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTN 98 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~-~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT 98 (869)
.-+.-|-|||.+..+.++-..-.|- .+.|-.|+.+ .+.-+|+|. ..|.+.-+-++--.-||++.|
T Consensus 280 LtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspe-------NlkTlFeFv-------~kGfDaL~Yqeh~Dy~iI~s~ 345 (1011)
T KOG2036|consen 280 LTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPE-------NLKTLFEFV-------FKGFDALEYQEHVDYDIIQST 345 (1011)
T ss_pred EEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChH-------HHHHHHHHH-------Hcchhhhcchhhcchhhhhhc
Confidence 3456799999998888873333464 5667777764 556666653 112222222222334799999
Q ss_pred CCchhhhHHHHhhccc---------h-hhhhccCCCCceEEEeechhhh
Q 002898 99 NSELGFDYLRDNLAAN---------S-EQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 99 ~~e~~fDyLrD~l~~~---------~-~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|.+|---..|=|+-.. | +..++. ..+.++||||-.|
T Consensus 346 np~fkkaivRInifr~hrQtIQYi~P~D~~kl~---q~eLlVIDEAAAI 391 (1011)
T KOG2036|consen 346 NPDFKKAIVRINIFREHRQTIQYISPHDHQKLG---QAELLVIDEAAAI 391 (1011)
T ss_pred ChhhhhhEEEEEEeccccceeEeeccchhhhcc---CCcEEEechhhcC
Confidence 9987422222222211 1 223444 5678889988765
No 390
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=31.85 E-value=1e+02 Score=35.44 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=16.2
Q ss_pred CeEEecCCCcHHH-HHHHHHHHHH
Q 002898 18 SIAEMKTGEGKTL-VSTLAAYLNA 40 (869)
Q Consensus 18 ~IaEm~TGEGKTL-va~lpa~l~A 40 (869)
.|..-..|.||+. +..++-++++
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhC
Confidence 3777889999975 5666666543
No 391
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.85 E-value=55 Score=40.08 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=12.0
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
.+.++||||||.|
T Consensus 118 ~~KVvIIDEah~L 130 (584)
T PRK14952 118 RYRIFIVDEAHMV 130 (584)
T ss_pred CceEEEEECCCcC
Confidence 7899999999987
No 392
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=31.81 E-value=98 Score=38.09 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=22.6
Q ss_pred CeEEECCC-chhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 93 DITYTNNS-ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 93 DI~YgT~~-e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|+....++ ..+.|-+|+-...-....... +..++||||||.|
T Consensus 89 DiieIdaas~igVd~IReIi~~~~~~P~~~---~~KVIIIDEad~L 131 (605)
T PRK05896 89 DIVELDAASNNGVDEIRNIIDNINYLPTTF---KYKVYIIDEAHML 131 (605)
T ss_pred ceEEeccccccCHHHHHHHHHHHHhchhhC---CcEEEEEechHhC
Confidence 44444432 356666665332111111223 5678999999986
No 393
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=31.66 E-value=26 Score=37.66 Aligned_cols=45 Identities=36% Similarity=0.551 Sum_probs=40.3
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhccC
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFSF 606 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~~ 606 (869)
..+|..-|=.||.|+ |||| ||=+||+...-|..+||=+++++-|.
T Consensus 151 GAEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~Ifa~~l~aelvsIAg~ 197 (228)
T PRK03511 151 GAELIADGNIHVYGM-----------MRGRALAGASGDRECQIFCTHLMAELVSIAGQ 197 (228)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEEcCE
Confidence 468899999999999 6777 69999999999999999999998773
No 394
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=31.43 E-value=2.8e+02 Score=33.32 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 002898 31 VSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (869)
Q Consensus 31 va~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~------~DI~YgT~ 99 (869)
..+|-.++.-.....|.|.+.+...+.+ +...+...|++++.+.|++++++|..++. .+|.++|-
T Consensus 261 ~~~L~~ll~~~~~~~~IVF~~tk~~~~~----l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 261 LELLLKLLKDEDEGRVIVFVRTKRLVEE----LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHH----HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec
Confidence 3333333333344569999999887776 66778889999999999999999987653 47777774
No 395
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.31 E-value=99 Score=32.33 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=24.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+..-.+|.|||..+.--++-.+..|..|..+|...
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44556899999765544543446788998888865
No 396
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=31.22 E-value=67 Score=31.26 Aligned_cols=32 Identities=31% Similarity=0.271 Sum_probs=23.6
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
-.+=|+|||.++.-.+...+..|+.|.++-.+
T Consensus 6 ~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D 37 (139)
T cd02038 6 SGKGGVGKTNISANLALALAKLGKRVLLLDAD 37 (139)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 34679999976555555567889999888755
No 397
>PRK07667 uridine kinase; Provisional
Probab=30.97 E-value=59 Score=33.53 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=26.9
Q ss_pred ecCCCcHHH-HHHHHHHHHHHcCCcEEEEecCHHHHHHH
Q 002898 22 MKTGEGKTL-VSTLAAYLNALTGEGVHVVTVNDYLAQRD 59 (869)
Q Consensus 22 m~TGEGKTL-va~lpa~l~AL~G~~V~VvT~ndyLA~RD 59 (869)
=..|+|||. +-.|...+ .-.|.+|.+++.-+|+..+.
T Consensus 24 G~~gsGKStla~~L~~~l-~~~~~~~~~i~~Dd~~~~~~ 61 (193)
T PRK07667 24 GLSRSGKTTFVANLKENM-KQEGIPFHIFHIDDYIVERN 61 (193)
T ss_pred CCCCCCHHHHHHHHHHHH-HhCCCcEEEEEcCcccchhh
Confidence 468999986 55555554 34688999999999876443
No 398
>PRK14016 cyanophycin synthetase; Provisional
Probab=30.82 E-value=1.2e+02 Score=38.15 Aligned_cols=86 Identities=27% Similarity=0.318 Sum_probs=46.1
Q ss_pred EEecCCC-cHHHHHHHHHHHHHHcCCcEEEEecCH-HH-----HHHHHHH---HHHHhhhcCCeEEEEcCCCCHHHH-Hh
Q 002898 20 AEMKTGE-GKTLVSTLAAYLNALTGEGVHVVTVND-YL-----AQRDAEW---MERVHRFLGLSVGLIQRGMIPEER-RS 88 (869)
Q Consensus 20 aEm~TGE-GKTLva~lpa~l~AL~G~~V~VvT~nd-yL-----A~RDae~---~~~ly~~LGLsv~~i~~~~~~~~r-k~ 88 (869)
.-.-||+ |||-|..|.+.+....|+.|.+.++.- |+ ...|... ...+..--...+.++--+...-.+ ..
T Consensus 482 iIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl 561 (727)
T PRK14016 482 IVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGL 561 (727)
T ss_pred EEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCC
Confidence 3345999 999998888887777888876655411 11 0011000 001222223444444333222222 23
Q ss_pred cc-CCCeEEECCCchhhhHH
Q 002898 89 NY-RCDITYTNNSELGFDYL 107 (869)
Q Consensus 89 aY-~~DI~YgT~~e~~fDyL 107 (869)
.| .|||...||=. .|+|
T Consensus 562 ~~~~pdvaVvTNI~--~DHL 579 (727)
T PRK14016 562 AYDRCDVGVVTNIG--EDHL 579 (727)
T ss_pred cccccCeEEEcCCC--HHHh
Confidence 45 68999999844 5777
No 399
>PHA02542 41 41 helicase; Provisional
Probab=30.65 E-value=76 Score=37.86 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=29.8
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEe---cCHHHHHHH
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT---VNDYLAQRD 59 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT---~ndyLA~RD 59 (869)
..|. |.=..+|.|||..++--|.-.|-.|++|.+++ +.+.|+.|-
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 3454 56678999999876655543456788888776 445555543
No 400
>PRK08939 primosomal protein DnaI; Reviewed
Probab=30.40 E-value=61 Score=36.31 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCeEEecCCCcHHHHH-HHHHHHHHHcCCcEEEEecCHHH
Q 002898 17 GSIAEMKTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYL 55 (869)
Q Consensus 17 G~IaEm~TGEGKTLva-~lpa~l~AL~G~~V~VvT~ndyL 55 (869)
|-+.-=.+|.|||..+ +++-. .+-.|..|-+++..+.+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~-l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANE-LAKKGVSSTLLHFPEFI 196 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEEHHHHH
Confidence 3356667999999644 44433 34568889888886543
No 401
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=30.28 E-value=3.7e+02 Score=28.67 Aligned_cols=85 Identities=19% Similarity=0.128 Sum_probs=54.1
Q ss_pred HHHhCCCeEEecCCCcHH-HHHHHHHHHHHHcCCcEEEEecCHHHH--------------------HHHHHHHHHHhhhc
Q 002898 12 AVLHDGSIAEMKTGEGKT-LVSTLAAYLNALTGEGVHVVTVNDYLA--------------------QRDAEWMERVHRFL 70 (869)
Q Consensus 12 ~~L~~G~IaEm~TGEGKT-Lva~lpa~l~AL~G~~V~VvT~ndyLA--------------------~RDae~~~~ly~~L 70 (869)
+.-++|+|.- ||-||| +++=--|.-.+=.|.++++|-|.+.+- .+..-..-|..+-+
T Consensus 35 i~~~~gkv~V--~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~ 112 (202)
T COG0794 35 ILECKGKVFV--TGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRL 112 (202)
T ss_pred HHhcCCcEEE--EcCChhHHHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHc
Confidence 3345789876 899999 343322323466788888888665431 23334556777888
Q ss_pred CCeEEEEcCCCCHHHHHhccCCCeEEECCCc
Q 002898 71 GLSVGLIQRGMIPEERRSNYRCDITYTNNSE 101 (869)
Q Consensus 71 GLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e 101 (869)
|.++..+++.-++. .+-.+||+...+..
T Consensus 113 g~~liaiT~~~~Ss---Lak~aDvvl~ip~~ 140 (202)
T COG0794 113 GAKLIAITSNPDSS---LAKAADVVLVIPVK 140 (202)
T ss_pred CCcEEEEeCCCCCh---HHHhcCeEEEccCc
Confidence 88888888754321 34457787777654
No 402
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.16 E-value=1.6e+02 Score=34.76 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCC
Q 002898 28 KTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNS 100 (869)
Q Consensus 28 KTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~~ 100 (869)
+.+..++..+.....|+.+.|.|+|..-+..-++ .+...|++++...+++++++|.... ..+|+++|..
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~----~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~ 285 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTA----SLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA 285 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHH----HHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech
Confidence 4444444443234567788999998866665554 4456799999999999999987654 3589999973
No 403
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=30.14 E-value=73 Score=33.46 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=25.4
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEec
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTV 51 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ 51 (869)
..|. +.--.||.|||..+.--++-.+.. |.+|..++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4566 667789999997655555544555 777777763
No 404
>CHL00095 clpC Clp protease ATP binding subunit
Probab=30.05 E-value=48 Score=42.13 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=17.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
+.-=.||.|||..+-..| ..|.|....++
T Consensus 543 lf~Gp~GvGKt~lA~~LA--~~l~~~~~~~~ 571 (821)
T CHL00095 543 LFSGPTGVGKTELTKALA--SYFFGSEDAMI 571 (821)
T ss_pred EEECCCCCcHHHHHHHHH--HHhcCCccceE
Confidence 344479999997665555 34666544333
No 405
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=30.04 E-value=1e+02 Score=32.25 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 16 DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
.|. +..-.+|.|||..+.--++-.+..|.+|..++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455 556689999997655444323457888877775
No 406
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=30.04 E-value=1.5e+02 Score=36.10 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=44.5
Q ss_pred HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 38 LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 38 l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
+....++.+.|.|.+...|++-++.+ ...|+.+.++.++++..+|.... ..+|+++|.
T Consensus 252 l~~~~~~k~LVF~nt~~~ae~l~~~L----~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd 315 (572)
T PRK04537 252 LSRSEGARTMVFVNTKAFVERVARTL----ERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD 315 (572)
T ss_pred HhcccCCcEEEEeCCHHHHHHHHHHH----HHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh
Confidence 34456789999999988777655544 45689999999999998887644 258888886
No 407
>PRK05636 replicative DNA helicase; Provisional
Probab=29.98 E-value=3e+02 Score=33.23 Aligned_cols=111 Identities=11% Similarity=0.100 Sum_probs=59.4
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEe---cCHHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHHH
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVT---VNDYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEERR 87 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT---~ndyLA~RDae~~~~ly~~LGLsv~~i-~~~~~~~~rk 87 (869)
..|. |+=..||.|||..++-.+.-.|+ .|++|.+++ +.+.|+.|-.... -+++...+ .+.++.++..
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~------s~v~~~~i~~g~l~~~e~~ 336 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE------AEVRLSDMRGGKMDEDAWE 336 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh------cCCCHHHHhcCCCCHHHHH
Confidence 4565 56778999999765544433344 478888774 3445555543222 22322222 2334544432
Q ss_pred h-------ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 88 S-------NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 88 ~-------aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
. ..+..+..-....+..+.++.....- .... +++++|||=..-|
T Consensus 337 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~---~~~~---~~~lvvIDYLql~ 387 (505)
T PRK05636 337 KLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRL---KQKH---DLKLIVVDYLQLM 387 (505)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHhc
Confidence 2 11234544444556667777654321 1123 7899999977643
No 408
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=29.95 E-value=84 Score=27.87 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=30.9
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
..++||+++|.+-..|...+..|+..|+...+|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG 84 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGG 84 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCC
Confidence 567899999999888999999999999976777775
No 409
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=29.94 E-value=1.7e+02 Score=33.47 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=22.1
Q ss_pred CceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHHcccC
Q 002898 125 PFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQG 172 (869)
Q Consensus 125 ~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~ 172 (869)
+.+++|||+||.|- . ..++.+.+.|++.
T Consensus 132 ~~kV~iI~~ae~m~-~-------------------~AaNaLLKtLEEP 159 (342)
T PRK06964 132 GARVVVLYPAEALN-V-------------------AAANALLKTLEEP 159 (342)
T ss_pred CceEEEEechhhcC-H-------------------HHHHHHHHHhcCC
Confidence 68899999999983 1 2678888888764
No 410
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.90 E-value=1.4e+02 Score=37.70 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCC
Q 002898 341 YARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNM 412 (869)
Q Consensus 341 aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~-gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnm 412 (869)
..++.|.+..++|+.|||..+.|...-.+.+.|+.+ |.+..++|++....++..+-.+ ..| ...|.|-|..
T Consensus 233 vYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G-~~~vVIGtRS 305 (730)
T COG1198 233 VYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG-EARVVIGTRS 305 (730)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-CceEEEEech
Confidence 345566666789999999999999999988888764 7888899997655566544333 556 5677776644
No 411
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=29.65 E-value=74 Score=40.74 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=19.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+.-=.||.|||..+-..+- .|.|..-.+++.|
T Consensus 600 lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~d 631 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAE--LLYGGEQNLITIN 631 (852)
T ss_pred EEECCCCCCHHHHHHHHHH--HHhCCCcceEEEe
Confidence 3444799999987755443 3655544444443
No 412
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=29.61 E-value=48 Score=41.72 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=47.8
Q ss_pred cccccCCCcccHHHHHHHHhCCCeEEeCCCCCccccc---CCCeEEe---ChhHHHHHHHHHHHHHHhcCC--cEEEEec
Q 002898 290 KLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVD---LPIQSFA---TARGKWEYARQEVESMFRLGR--PVLVGST 361 (869)
Q Consensus 290 kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d---~~d~i~~---t~~~K~~aii~ei~~~~~~gr--PVLV~t~ 361 (869)
||.-||+|+.-+ .|- -|-..+.||| |.+..| .|--|+- |..+......+.+...|++=- .||||..
T Consensus 416 KLIIMSATLRVs--DFt--enk~LFpi~p--PlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 416 KLIIMSATLRVS--DFT--ENKRLFPIPP--PLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred eEEEEeeeEEec--ccc--cCceecCCCC--ceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 566788888631 111 0223344544 333322 3444433 444444444555556665432 3999999
Q ss_pred chhhHHHHHHHHHHC
Q 002898 362 SVENSEYLSDLLKQQ 376 (869)
Q Consensus 362 Si~~SE~ls~~L~~~ 376 (869)
--.+++.|.+.|++.
T Consensus 490 GQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKR 504 (1172)
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999999999886
No 413
>PRK11519 tyrosine kinase; Provisional
Probab=29.52 E-value=50 Score=41.31 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=25.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
..-|||||.+++-.|...|..|+.|.+|-.+
T Consensus 534 ~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 534 VSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3569999998777777789999999998653
No 414
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=29.42 E-value=1.5e+02 Score=29.27 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=55.1
Q ss_pred ccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHH
Q 002898 291 LSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLS 370 (869)
Q Consensus 291 L~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls 370 (869)
+.|-||..|+..-+..+-+.-.+ .++-.+....++.+.+++++. +|=.|...+.+..+.+.
T Consensus 3 ILGsTGSIG~qtLdVi~~~~d~f---------------~v~~Lsa~~n~~~L~~q~~~f----~p~~v~i~~~~~~~~l~ 63 (129)
T PF02670_consen 3 ILGSTGSIGTQTLDVIRKHPDKF---------------EVVALSAGSNIEKLAEQAREF----KPKYVVIADEEAYEELK 63 (129)
T ss_dssp EESTTSHHHHHHHHHHHHCTTTE---------------EEEEEEESSTHHHHHHHHHHH----T-SEEEESSHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHhCCCce---------------EEEEEEcCCCHHHHHHHHHHh----CCCEEEEcCHHHHHHHH
Confidence 68999999998766655552111 122334455666777777664 58889999999999999
Q ss_pred HHHHHCCCCeEEeec
Q 002898 371 DLLKQQGIPHNVLNA 385 (869)
Q Consensus 371 ~~L~~~gi~~~vLna 385 (869)
..|...+....++.+
T Consensus 64 ~~~~~~~~~~~v~~G 78 (129)
T PF02670_consen 64 KALPSKGPGIEVLSG 78 (129)
T ss_dssp HHHHHTTSSSEEEES
T ss_pred HHhhhcCCCCEEEeC
Confidence 999888889999988
No 415
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=29.09 E-value=81 Score=41.69 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.8
Q ss_pred hCCCeEEecCCCcHHHHHHHHHHHHHHcCC------cEEEEecCH----HHHHHHHHHHHHHhhh
Q 002898 15 HDGSIAEMKTGEGKTLVSTLAAYLNALTGE------GVHVVTVND----YLAQRDAEWMERVHRF 69 (869)
Q Consensus 15 ~~G~IaEm~TGEGKTLva~lpa~l~AL~G~------~V~VvT~nd----yLA~RDae~~~~ly~~ 69 (869)
....++++..|+|||-|.+.-.+ ..|.+. ...|||.|. +|..|..+.+......
T Consensus 16 ~~~~lveASAGSGKT~vL~~r~l-rlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~ 79 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLAERVL-RLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQE 79 (1139)
T ss_pred CCcEEEEEcCCCCchhHHHHHHH-HHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHHHHhc
Confidence 34459999999999988776664 555443 357999886 6777777777766553
No 416
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=28.88 E-value=2.6e+02 Score=33.30 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=25.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+..=.+|.|||..+.--++-.+..|..|..++.-.
T Consensus 277 li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 277 LVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 44557999999876666655567899999887643
No 417
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=28.81 E-value=2.2e+02 Score=32.47 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=53.9
Q ss_pred CchhhHHHHHH-Hh--CC----C-eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHH-HHHHHHhhhcCCe
Q 002898 3 HFDVQIIGGAV-LH--DG----S-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA-EWMERVHRFLGLS 73 (869)
Q Consensus 3 p~dvQl~g~~~-L~--~G----~-IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDa-e~~~~ly~~LGLs 73 (869)
-+|+|.++=+. +. .| . |+=+ |-+|+-|+-=-+.+.+..|..|.+++|-.|.-..+. +....+++..|.+
T Consensus 134 ~HPtQaLaDl~Ti~e~~g~l~g~~va~v--Gd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~ 211 (331)
T PRK02102 134 WHPTQMLADFMTMKEHFGPLKGLKLAYV--GDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAK 211 (331)
T ss_pred CChHHHHHHHHHHHHHhCCCCCCEEEEE--CCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCe
Confidence 47999888763 32 24 2 5544 777654322222234567899999999888654333 3345566777877
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECC
Q 002898 74 VGLIQRGMIPEERRSNYRCDITYTNN 99 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY~~DI~YgT~ 99 (869)
+.+. .+ + ....-+|||+|...
T Consensus 212 ~~~~-~d--~--~ea~~~aDvvyt~~ 232 (331)
T PRK02102 212 ITIT-ED--P--EEAVKGADVIYTDV 232 (331)
T ss_pred EEEE-cC--H--HHHhCCCCEEEEcC
Confidence 5532 22 2 22345799999963
No 418
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=28.81 E-value=63 Score=33.79 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=24.0
Q ss_pred CCC-eEEecCCCcHHHHHHHHHHHHH-HcCCcEEEEecCHH
Q 002898 16 DGS-IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVNDY 54 (869)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~lpa~l~A-L~G~~V~VvT~ndy 54 (869)
..| .+--.||+|||-++...+.-.. -.|.+|.|+=|+-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 344 3445799999976665554222 35567777766654
No 419
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=28.78 E-value=2.1e+02 Score=32.36 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=35.0
Q ss_pred CeEEECC----CchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHH
Q 002898 93 DITYTNN----SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAEL 168 (869)
Q Consensus 93 DI~YgT~----~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~ 168 (869)
|+.+-.+ ..++.|-+|+-...-....... +.+++||||||.|=. ..++.+.+.
T Consensus 73 D~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~---~~kv~iI~~a~~m~~--------------------~aaNaLLK~ 129 (328)
T PRK05707 73 DNFVLEPEEADKTIKVDQVRELVSFVVQTAQLG---GRKVVLIEPAEAMNR--------------------NAANALLKS 129 (328)
T ss_pred CEEEEeccCCCCCCCHHHHHHHHHHHhhccccC---CCeEEEECChhhCCH--------------------HHHHHHHHH
Confidence 6666554 3467787776432111111233 788999999999832 257788888
Q ss_pred ccc
Q 002898 169 LVQ 171 (869)
Q Consensus 169 l~~ 171 (869)
|++
T Consensus 130 LEE 132 (328)
T PRK05707 130 LEE 132 (328)
T ss_pred HhC
Confidence 876
No 420
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=28.77 E-value=1.9e+02 Score=33.50 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 39 NALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 39 ~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
....+..+.|.|++..-+++-++. +...|++++.+.++++.++|.... ..+|+++|+
T Consensus 251 ~~~~~~~~lVF~~t~~~~~~l~~~----L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd 313 (423)
T PRK04837 251 EEEWPDRAIIFANTKHRCEEIWGH----LAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD 313 (423)
T ss_pred HhcCCCeEEEEECCHHHHHHHHHH----HHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec
Confidence 334467899999998776654444 455699999999999988887544 358999996
No 421
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=28.73 E-value=91 Score=35.34 Aligned_cols=90 Identities=24% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCcHH-HHHHHHHHHHHHc--------C-----Cc-EEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCC-C--HHHH
Q 002898 25 GEGKT-LVSTLAAYLNALT--------G-----EG-VHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGM-I--PEER 86 (869)
Q Consensus 25 GEGKT-Lva~lpa~l~AL~--------G-----~~-V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~-~--~~~r 86 (869)
|+||| +|..|.-+|.+-- | ++ ..+|+++. -|..--.|---+...++ |.++.+.- - .+.-
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLP--VPVIVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEEEeCcHHHHHHHH
Confidence 99999 5666666665430 1 12 67777777 33332333334566777 33333221 1 1111
Q ss_pred HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeec
Q 002898 87 RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDE 133 (869)
Q Consensus 87 k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDE 133 (869)
...+.+||+...- .|.+. .+.| .++++++|-
T Consensus 124 ~~~~~~dviilDD----------GfQh~---~L~r---Dl~Ivl~D~ 154 (326)
T PF02606_consen 124 LKEFPADVIILDD----------GFQHR---RLKR---DLDIVLVDA 154 (326)
T ss_pred HHHCCCCEEEEcC----------Ccccc---cccC---CcEEEEEeC
Confidence 2334578875443 33332 3445 999999997
No 422
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.55 E-value=66 Score=36.49 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=22.4
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~ndy 54 (869)
+.-=.||.|||.. .+++-.+ .-.|..|..+|..+.
T Consensus 187 ll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t~~~l 222 (329)
T PRK06835 187 LFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRTADEL 222 (329)
T ss_pred EEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEEHHHH
Confidence 5666899999964 3333322 225788888887553
No 423
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=28.34 E-value=1.2e+02 Score=40.22 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=39.7
Q ss_pred hCCC-eEEecCCCcHHHHHHHHHHHHHHcC-------------CcEEEEecCH----HHHHHHHHHHHHHhhhc
Q 002898 15 HDGS-IAEMKTGEGKTLVSTLAAYLNALTG-------------EGVHVVTVND----YLAQRDAEWMERVHRFL 70 (869)
Q Consensus 15 ~~G~-IaEm~TGEGKTLva~lpa~l~AL~G-------------~~V~VvT~nd----yLA~RDae~~~~ly~~L 70 (869)
++|. +.|+.-|+|||-+.+..- |.-|.| ..+.|||-|+ +|-.|.-+.+..++..+
T Consensus 16 L~G~~LIEASAGTGKTyTIa~ly-LrLlL~~g~~~~~~~~L~~~~ILvvTFT~aAt~Elr~RIr~rL~~~~~~~ 88 (1181)
T PRK10876 16 LQGERLIEASAGTGKTFTIAALY-LRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSNIHELRIAC 88 (1181)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHH-HHHHccCCccccccCCCChhhEEEEechHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 999999999997655433 344443 2578999875 78889888887776655
No 424
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.25 E-value=76 Score=39.66 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=19.6
Q ss_pred chhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 101 e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..+.|-+|+-+..-....... +..++||||||.|
T Consensus 98 ~~gVd~IRelle~a~~~P~~g---k~KVIIIDEad~L 131 (709)
T PRK08691 98 NTGIDNIREVLENAQYAPTAG---KYKVYIIDEVHML 131 (709)
T ss_pred cCCHHHHHHHHHHHHhhhhhC---CcEEEEEECcccc
Confidence 345566666543211111233 6789999999975
No 425
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=27.97 E-value=93 Score=26.90 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=31.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
..+.+|+|+|.+-..|..++..|+..|.+ ..+|+++
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG 90 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGG 90 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCC
Confidence 56789999999999999999999999997 6677775
No 426
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=27.97 E-value=1.8e+02 Score=36.02 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=37.0
Q ss_pred eEEecCCCcHH--HHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHH-HHhhhcCCe
Q 002898 19 IAEMKTGEGKT--LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWME-RVHRFLGLS 73 (869)
Q Consensus 19 IaEm~TGEGKT--Lva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~-~ly~~LGLs 73 (869)
+.=+.=--||| ++..+.+++....|-.+..+..=..-+.--.+++. .+..++|=+
T Consensus 206 VFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~ 263 (668)
T PHA03372 206 VFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK 263 (668)
T ss_pred EEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc
Confidence 56666778999 45666666555778777777776766666666654 455677654
No 427
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.92 E-value=53 Score=41.10 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=24.0
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
..-|||||.+++-.|...|..|++|.+|=.+
T Consensus 539 ~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 539 ATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3459999987666666678999999988654
No 428
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=27.87 E-value=60 Score=35.44 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=29.0
Q ss_pred cCCCcHHHHHHH-HHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 23 KTGEGKTLVSTL-AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 23 ~TGEGKTLva~l-pa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
+=|.|||.++++ +..+.+=.|..|.+|-.-+ --.+...||+..
T Consensus 8 KGG~GKTtiaalll~~l~~~~~~~VLvVDaDp---------d~nL~~~LGve~ 51 (255)
T COG3640 8 KGGVGKTTIAALLLKRLLSKGGYNVLVVDADP---------DSNLPEALGVEE 51 (255)
T ss_pred CCCccHHHHHHHHHHHHHhcCCceEEEEeCCC---------CCChHHhcCCCC
Confidence 569999987777 6655555568888885422 224667788875
No 429
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=27.84 E-value=72 Score=34.56 Aligned_cols=38 Identities=34% Similarity=0.314 Sum_probs=29.4
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEe--cCHHHHH
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVT--VNDYLAQ 57 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT--~ndyLA~ 57 (869)
+.-|=|.|||-++++.+...|-.|.+|.++= ||.-|++
T Consensus 7 ~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 7 ASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred ecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 3446799999888777776788899999874 6777763
No 430
>PRK00030 minC septum formation inhibitor; Provisional
Probab=27.61 E-value=34 Score=38.18 Aligned_cols=44 Identities=39% Similarity=0.653 Sum_probs=39.0
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|=.||.|+ |||| ||-+||....-|..+|+=+|+++-|
T Consensus 213 GAEViAdGnIhVyG~-----------LrGra~AG~~Gd~~A~If~~~l~aelvsIAg 258 (292)
T PRK00030 213 GAEVIADGNVHVYGP-----------LRGKAMAGARGDTSARIFTTQLDAELLAVAG 258 (292)
T ss_pred CCEEEeCCCEEEEEE-----------cccEEEecCCCCCccEEEeccCCceEEEEcc
Confidence 467888899999998 6676 7999999999999999999999866
No 431
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=27.59 E-value=1.8e+02 Score=37.11 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=42.7
Q ss_pred HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc----CCCeEEECC
Q 002898 41 LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY----RCDITYTNN 99 (869)
Q Consensus 41 L~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY----~~DI~YgT~ 99 (869)
..|++|.|.|.|.. +++++...+...|+++.++.++++.+++.... ...|+++|+
T Consensus 426 ~~~~pvLIf~~t~~----~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATd 484 (790)
T PRK09200 426 ETGRPVLIGTGSIE----QSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATN 484 (790)
T ss_pred hcCCCEEEEeCcHH----HHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEcc
Confidence 47999999999964 45677777777899999999988776665332 347999997
No 432
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=27.48 E-value=1.9e+02 Score=37.31 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=44.5
Q ss_pred HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC----CCeEEECC
Q 002898 41 LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR----CDITYTNN 99 (869)
Q Consensus 41 L~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~----~DI~YgT~ 99 (869)
-.|++|.|.|.|.. +++++..+....|+++.++.+.++..++..... ..|+++||
T Consensus 447 ~~GrpVLV~t~sv~----~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~VtIATn 505 (908)
T PRK13107 447 ERGQPVLVGTVSIE----QSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATN 505 (908)
T ss_pred HcCCCEEEEeCcHH----HHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCcEEEecC
Confidence 36999999999987 566777888889999999988888777765432 25999998
No 433
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.35 E-value=1.7e+02 Score=27.98 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHH
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDL 372 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~ 372 (869)
.++.-+-+||.++.||-.... + + .+...+..+.+. ....|||++|.|=..|-.|..+
T Consensus 49 ~~~~a~~~Gl~y~~iPv~~~~--------~--~-~~~v~~f~~~l~---~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 49 EAAAAEALGLQYVHIPVDGGA--------I--T-EEDVEAFADALE---SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHCT-EEEE----TTT-------------HHHHHHHHHHHH---TTTTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEeecCCCC--------C--C-HHHHHHHHHHHH---hCCCCEEEECCCChhHHHHHHH
Confidence 345667899999999874321 1 1 233333333332 3456999999999988776554
No 434
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=26.95 E-value=1.5e+02 Score=29.84 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=36.0
Q ss_pred CCeEEECCC----chhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHH
Q 002898 92 CDITYTNNS----ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAE 167 (869)
Q Consensus 92 ~DI~YgT~~----e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~ 167 (869)
.|+.+..+. .++.|-+|+-...-....... +.+++||||||.|-. ..++.+.+
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~---~~KviiI~~ad~l~~--------------------~a~NaLLK 124 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEG---KYKVIIIDEADKLTE--------------------EAQNALLK 124 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTS---SSEEEEEETGGGS-H--------------------HHHHHHHH
T ss_pred cceEEEecccccchhhHHHHHHHHHHHHHHHhcC---CceEEEeehHhhhhH--------------------HHHHHHHH
Confidence 467766665 467787774332211111223 789999999999842 25677888
Q ss_pred HcccC
Q 002898 168 LLVQG 172 (869)
Q Consensus 168 ~l~~~ 172 (869)
.|++.
T Consensus 125 ~LEep 129 (162)
T PF13177_consen 125 TLEEP 129 (162)
T ss_dssp HHHST
T ss_pred HhcCC
Confidence 88764
No 435
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=26.53 E-value=36 Score=32.79 Aligned_cols=19 Identities=47% Similarity=0.774 Sum_probs=16.9
Q ss_pred hHHHHhhhccccCCCCCce
Q 002898 572 RIDNQLRGRAGRQGDPGST 590 (869)
Q Consensus 572 RiD~QlrGRagRQGdpGss 590 (869)
-.|||+|.|||++|-||+-
T Consensus 57 ~lE~~lR~~aG~~~y~~gF 75 (112)
T PF10861_consen 57 DLENWLRRRAGEAGYPGGF 75 (112)
T ss_pred HHHHHHHHHcCCCCCCCCH
Confidence 3899999999999999864
No 436
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=26.30 E-value=3e+02 Score=31.49 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=53.7
Q ss_pred CchhhHHHHHH-H--hC------C-CeEEecCCCcHH--HHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHH-HHHHhhh
Q 002898 3 HFDVQIIGGAV-L--HD------G-SIAEMKTGEGKT--LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEW-MERVHRF 69 (869)
Q Consensus 3 p~dvQl~g~~~-L--~~------G-~IaEm~TGEGKT--Lva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~-~~~ly~~ 69 (869)
-+|+|.++=+. + +. | +|+=+ |-+|. .-..+.+ .+..|..+.+++|..|+-..+.-+ ...+...
T Consensus 133 ~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~v--GD~~~~v~~Sl~~~--~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~ 208 (336)
T PRK03515 133 FHPTQLLADLLTMQEHLPGKAFNEMTLAYA--GDARNNMGNSLLEA--AALTGLDLRLVAPKACWPEAALVTECRALAQK 208 (336)
T ss_pred CChHHHHHHHHHHHHHhCCCCcCCCEEEEe--CCCcCcHHHHHHHH--HHHcCCEEEEECCchhcCcHHHHHHHHHHHHH
Confidence 47999988763 2 12 2 25555 55543 3333333 356699999999999876655432 3455666
Q ss_pred cCCeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002898 70 LGLSVGLIQRGMIPEERRSNYRCDITYTNN 99 (869)
Q Consensus 70 LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~ 99 (869)
-|.++.+.. + + ....-++||+|.+.
T Consensus 209 ~g~~i~~~~-d--~--~ea~~~aDvvytd~ 233 (336)
T PRK03515 209 NGGNITLTE-D--I--AEGVKGADFIYTDV 233 (336)
T ss_pred cCCeEEEEc-C--H--HHHhCCCCEEEecC
Confidence 677755332 2 2 22345799999983
No 437
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=26.30 E-value=1.9e+02 Score=27.74 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=36.6
Q ss_pred EEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCC
Q 002898 356 VLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (869)
Q Consensus 356 VLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnm 412 (869)
|+|=+++.+.+....+.+.++|++.-+=+.+ ..+.+.+.+.++.+.-.|.+|.||
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeCCC
Confidence 7777778888888888888888886553332 334444566666667899999998
No 438
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=26.26 E-value=1.3e+02 Score=34.67 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=42.0
Q ss_pred CeEEecCCCcHHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHh
Q 002898 18 SIAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 18 ~IaEm~TGEGKTLva~lpa~l~AL~-----G~~V~VvT~ndyLA~RDae~~~~ly 67 (869)
.|+||.-|.| |++.-|..+++.|. .-.+++|-+|.+|++|..+.++.+-
T Consensus 80 ~lvEiGaG~G-~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 80 KLVEIGAGRG-TLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred eEEEeCCCcC-hHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 3999999999 77777777777774 6799999999999999999888664
No 439
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=26.11 E-value=38 Score=36.17 Aligned_cols=44 Identities=41% Similarity=0.613 Sum_probs=39.5
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|=.||.|+ |||| ||=.||+...-|-++||=+++++-|
T Consensus 143 GAEViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~~elv~Iag 188 (221)
T PRK04804 143 GAEVIADGSIHIYGT-----------LRGRAIAGASGDKEAVIICHSLEAELVSIAG 188 (221)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEecCCCCCccEEEeccCCccEEEECC
Confidence 468889999999998 6676 6999999999999999999999876
No 440
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.83 E-value=1.3e+02 Score=36.88 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.5
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||||.|
T Consensus 119 ~~KVvIIdev~~L 131 (576)
T PRK14965 119 RYKIFIIDEVHML 131 (576)
T ss_pred CceEEEEEChhhC
Confidence 6789999999975
No 441
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=25.77 E-value=98 Score=37.67 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.7
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||||.|
T Consensus 119 ~~kViIIDE~~~L 131 (559)
T PRK05563 119 KYKVYIIDEVHML 131 (559)
T ss_pred CeEEEEEECcccC
Confidence 6889999999976
No 442
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.57 E-value=64 Score=40.39 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|.-.+-|||||.+++-.|+..|..|+.|.+|-.+
T Consensus 551 vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 551 TQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred eecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5566789999987777777778899999999664
No 443
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.39 E-value=56 Score=36.99 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=25.7
Q ss_pred hCCC-eEEecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCH
Q 002898 15 HDGS-IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 15 ~~G~-IaEm~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~nd 53 (869)
..|- ++-=.||+|||.+ |+|.-|+|. -+..||+|--|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~--~~~~HIlTIED 162 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINK--HKAKHILTIED 162 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhc--cCCcceEEecC
Confidence 3566 6777899999864 666666542 35779999644
No 444
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=25.25 E-value=2e+02 Score=33.22 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=42.5
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 002898 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (869)
Q Consensus 42 ~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~------~DI~YgT~ 99 (869)
.+..+.|.|.+..-|.+-++.+. ..|+++..+.++++..+|..+.. .+|+++|.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd 303 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLR----KAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD 303 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHH----hCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 45678999999877776666554 47999999999999998876543 58888885
No 445
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=25.03 E-value=1.2e+02 Score=37.35 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=20.8
Q ss_pred CchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 100 SELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 100 ~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
+..+.|-+|+-+..-....+.. +..++||||||.|
T Consensus 110 s~~gvd~IReIie~~~~~P~~a---~~KVvIIDEad~L 144 (598)
T PRK09111 110 SHTGVDDIREIIESVRYRPVSA---RYKVYIIDEVHML 144 (598)
T ss_pred ccCCHHHHHHHHHHHHhchhcC---CcEEEEEEChHhC
Confidence 3456677765432111112333 6789999999987
No 446
>PF13245 AAA_19: Part of AAA domain
Probab=25.03 E-value=1.1e+02 Score=27.01 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhc----CCcEEEEecchhhHHHHHHHH
Q 002898 338 KWEYARQEVESMFRL----GRPVLVGSTSVENSEYLSDLL 373 (869)
Q Consensus 338 K~~aii~ei~~~~~~----grPVLV~t~Si~~SE~ls~~L 373 (869)
|-..+++.+...... +++|||.+.|-..++.+.+.|
T Consensus 23 KT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 23 KTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 333444444444433 889999999999999999998
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=25.00 E-value=1.1e+02 Score=35.30 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=25.9
Q ss_pred hHHHHHHHhCCC-eEEecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCH
Q 002898 7 QIIGGAVLHDGS-IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 7 Ql~g~~~L~~G~-IaEm~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~nd 53 (869)
+++-.+.-..|. ++-=.||+|||-+ ++|.-+++.-.+.+.+|+|..|
T Consensus 125 ~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Ed 173 (358)
T TIGR02524 125 AIIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEA 173 (358)
T ss_pred HHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence 333333323455 4555899999854 4444443333344567888644
No 448
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=24.93 E-value=98 Score=39.15 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=11.8
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++++||+|.+
T Consensus 557 p~sVlllDEieka 569 (758)
T PRK11034 557 PHAVLLLDEIEKA 569 (758)
T ss_pred CCcEEEeccHhhh
Confidence 6789999999997
No 449
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=24.88 E-value=1.7e+02 Score=31.80 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=25.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
++.=.+|.|||..++--++-.|..|.+|..++.-
T Consensus 40 lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 40 NITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5566799999987776665456788888877764
No 450
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=24.87 E-value=1.2e+02 Score=31.91 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 25 GEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 25 GEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
=.|||+.-++-++-..+..+.+.|+|-.|-....+.+.+..+-+.||+++.++
T Consensus 132 STG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~v 184 (191)
T PF15609_consen 132 STGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRARFEALAEELGIPIDVV 184 (191)
T ss_pred cchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 35899999999987777788999999999999999999999999999998765
No 451
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=24.64 E-value=96 Score=30.04 Aligned_cols=31 Identities=29% Similarity=0.243 Sum_probs=22.1
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
.=|.|||..++-.|...|-.|++|.+|-.+.
T Consensus 9 ~~g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 9 KGGVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp STTSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 4599999877766666888998888887653
No 452
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=24.51 E-value=1.8e+02 Score=33.36 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Q 002898 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (869)
Q Consensus 632 ~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~ 677 (869)
..+|...|......+.+..+.+++...--+.++.-+|..|+.|++|
T Consensus 43 v~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G 88 (337)
T PTZ00007 43 LKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQ 88 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 4557888999999999988999988888889999999999999986
No 453
>PRK13768 GTPase; Provisional
Probab=24.30 E-value=81 Score=34.17 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=21.2
Q ss_pred cCCCcHHH-HHHHHHHHHHHcCCcEEEEecC
Q 002898 23 KTGEGKTL-VSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 23 ~TGEGKTL-va~lpa~l~AL~G~~V~VvT~n 52 (869)
..|.|||. +..+..+ .+..|+.|++|.-.
T Consensus 10 ~~G~GKTt~~~~~~~~-l~~~g~~v~~i~~D 39 (253)
T PRK13768 10 TAGSGKTTLTKALSDW-LEEQGYDVAIVNLD 39 (253)
T ss_pred CCCccHHHHHHHHHHH-HHhcCCceEEEECC
Confidence 48999987 4555554 46689999998744
No 454
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.29 E-value=99 Score=36.86 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=11.7
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
...++||||+|.+
T Consensus 117 ~~kVvIIDE~h~L 129 (472)
T PRK14962 117 KYKVYIIDEVHML 129 (472)
T ss_pred CeEEEEEEChHHh
Confidence 6789999999987
No 455
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.22 E-value=1.1e+02 Score=37.10 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=11.7
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||||.|
T Consensus 119 ~~kViIIDEa~~l 131 (546)
T PRK14957 119 RYKVYLIDEVHML 131 (546)
T ss_pred CcEEEEEechhhc
Confidence 6789999999986
No 456
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=24.18 E-value=1.9e+02 Score=35.46 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=45.0
Q ss_pred HHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECCC
Q 002898 37 YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNNS 100 (869)
Q Consensus 37 ~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~------~DI~YgT~~ 100 (869)
++..-.|+.+.|.|.+..-+. ++...+...|++++.+.+++++++|..... .+|+++|+.
T Consensus 230 ~l~~~~~~~~IIFc~tr~~~e----~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a 295 (607)
T PRK11057 230 YVQEQRGKSGIIYCNSRAKVE----DTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA 295 (607)
T ss_pred HHHhcCCCCEEEEECcHHHHH----HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech
Confidence 344556788899999876554 555555667999999999999998875442 589999973
No 457
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=24.13 E-value=2e+02 Score=34.50 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=33.7
Q ss_pred EEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccc
Q 002898 561 HVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQD 598 (869)
Q Consensus 561 ~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD 598 (869)
-|+....++.++---.+.||+||-|--|.+-.+|.=+.
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 48899999999999999999999999999998876433
No 458
>TIGR01222 minC septum site-determining protein MinC. The minC protein assists in correct placement of the septum for cell division by inhibiting septum formation at other sites. Homologs from Deinocoocus, Synechocystis PCC 6803, and Helicobacter pylori do not hit the full length of the model and score between the trusted and noise cutoffs.
Probab=24.01 E-value=45 Score=35.47 Aligned_cols=44 Identities=43% Similarity=0.693 Sum_probs=39.6
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|=.||.|+ |||| ||=+||....-|-.+|+=+++++-|
T Consensus 141 GAeViA~GnI~V~G~-----------LrG~a~AG~~Gd~~A~I~a~~l~ae~v~Iag 186 (217)
T TIGR01222 141 GAEVLADGNIHVYGK-----------LRGRALAGANGDTSAVIFALDLQAELISIAG 186 (217)
T ss_pred CCEEEeCCCEEEEEE-----------eccEEEcCCCCCCCcEEEeccCCccEEEECC
Confidence 568999999999998 6777 6999999999999999999999866
No 459
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.89 E-value=73 Score=42.13 Aligned_cols=19 Identities=42% Similarity=0.814 Sum_probs=16.0
Q ss_pred CCceEEEeechhhhhhhcCC
Q 002898 124 KPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 124 R~~~~aIVDEvDsiLiDea~ 143 (869)
+|..|+|+||||.-| |.++
T Consensus 1087 ~PaPf~vLDEVDAaL-D~~N 1105 (1163)
T COG1196 1087 RPAPFYVLDEVDAAL-DDAN 1105 (1163)
T ss_pred CCCCeeeeccchhhc-cHHH
Confidence 489999999999987 7654
No 460
>PTZ00035 Rad51 protein; Provisional
Probab=23.80 E-value=1.7e+02 Score=33.39 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=48.3
Q ss_pred CCeEEe--cCCCcHHHHHHHHHHHHHH------cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHh
Q 002898 17 GSIAEM--KTGEGKTLVSTLAAYLNAL------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRS 88 (869)
Q Consensus 17 G~IaEm--~TGEGKTLva~lpa~l~AL------~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~ 88 (869)
|.|.++ ..|.|||..+...++...+ .+..|..|.....+.. +.+..+.+.+|+...
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~---eri~~ia~~~g~~~~------------- 181 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRP---ERIVQIAERFGLDPE------------- 181 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCH---HHHHHHHHHhCCChH-------------
Confidence 454444 6899999876555543333 2334533333222221 224444555554311
Q ss_pred ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 89 NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 89 aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
..-..|.|..... .+.+.+.+..-....... ++..+|||=+-+++
T Consensus 182 ~~l~nI~~~~~~~--~e~~~~~l~~~~~~l~~~---~~~lvVIDSital~ 226 (337)
T PTZ00035 182 DVLDNIAYARAYN--HEHQMQLLSQAAAKMAEE---RFALLIVDSATALF 226 (337)
T ss_pred hHhhceEEEccCC--HHHHHHHHHHHHHHhhcc---CccEEEEECcHHhh
Confidence 1112366665443 233333332211112223 68899999777654
No 461
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.75 E-value=1.1e+02 Score=38.96 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.7
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+++++||||||.|
T Consensus 119 r~KVIIIDEah~L 131 (830)
T PRK07003 119 RFKVYMIDEVHML 131 (830)
T ss_pred CceEEEEeChhhC
Confidence 6889999999986
No 462
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=23.65 E-value=1.2e+02 Score=28.05 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=30.4
Q ss_pred hcCCcEEEEecch--hhHHHHHHHHHHCCCCeEEeecC
Q 002898 351 RLGRPVLVGSTSV--ENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si--~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
...+||+|.|.+- ..|...+..|...|++..+|+++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG 99 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGG 99 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCC
Confidence 5678999999975 47888999999999987788875
No 463
>PF06823 DUF1236: Protein of unknown function (DUF1236); InterPro: IPR009642 This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.
Probab=23.65 E-value=71 Score=27.94 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.6
Q ss_pred CcceEEECCeEEEEeCCCCccc
Q 002898 227 DVQYIVRNGKALIINELTGRVE 248 (869)
Q Consensus 227 d~dYiV~d~~I~ivDe~TGR~~ 248 (869)
+-.|++.||+++|||..|.|+.
T Consensus 40 ~Y~Y~~v~~~~ViVdP~Tr~VV 61 (65)
T PF06823_consen 40 GYRYVVVNDRIVIVDPRTRRVV 61 (65)
T ss_pred CceEEEECCEEEEEcCCCCEEE
Confidence 6679999999999999998874
No 464
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=23.64 E-value=3.8e+02 Score=24.43 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=38.4
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECCC
Q 002898 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNNS 100 (869)
Q Consensus 42 ~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~------~DI~YgT~~ 100 (869)
.+.++.|.|++..-+.+-+ ..+...+..+.++.+++++.+|..... ..|+.+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~ 87 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELA----ELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV 87 (131)
T ss_pred CCCcEEEEeCcHHHHHHHH----HHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh
Confidence 3788999999966554444 444446889999999998877764332 357777763
No 465
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=23.56 E-value=1.3e+02 Score=36.47 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCeEEECCC-chhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 92 CDITYTNNS-ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 92 ~DI~YgT~~-e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
.|+..+..+ ..+.|-+|+.+.......... +..++||||||.|
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~---~~KVvIIDEad~L 129 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMA---RFKIFIIDEVHML 129 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccC---CeEEEEEECcccC
Confidence 344444322 246788887664311011223 6789999999987
No 466
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=23.53 E-value=3.2e+02 Score=30.32 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=20.2
Q ss_pred chhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 101 e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
....|-+|+-+..-....... +..++|||++|.|
T Consensus 72 ~i~v~~ir~~~~~~~~~p~~~---~~kv~iI~~ad~m 105 (313)
T PRK05564 72 SIGVDDIRNIIEEVNKKPYEG---DKKVIIIYNSEKM 105 (313)
T ss_pred CCCHHHHHHHHHHHhcCcccC---CceEEEEechhhc
Confidence 344566666443110112233 7789999999997
No 467
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=23.52 E-value=2.2e+02 Score=30.65 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Q 002898 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGA 678 (869)
Q Consensus 633 ~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~ 678 (869)
.+|...|.++...+-+..+...+...--+.+++-+|..|+.|+.+.
T Consensus 5 ~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~ 50 (244)
T PF00956_consen 5 EALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGK 50 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 4577888888888888888888888888899999999999999874
No 468
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=23.35 E-value=1.4e+02 Score=37.43 Aligned_cols=117 Identities=19% Similarity=0.138 Sum_probs=0.0
Q ss_pred hCCCeEEecCCCcHHHHHHHHHHHHHHcCC----------cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHH
Q 002898 15 HDGSIAEMKTGEGKTLVSTLAAYLNALTGE----------GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPE 84 (869)
Q Consensus 15 ~~G~IaEm~TGEGKTLva~lpa~l~AL~G~----------~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~ 84 (869)
+.|-|..-.-|-|||++..-.+.-.--.-+ ...|||| ..|-.+=..++..=.+.=-|+|....|.--.+
T Consensus 345 ~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~ 423 (901)
T KOG4439|consen 345 PSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVARRLEQNALSVYLYHGPNKRE 423 (901)
T ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHHHHHhhcceEEEEecCCcccc
Q ss_pred HHHhccCC-CeEEECCCchhh---hHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 85 ERRSNYRC-DITYTNNSELGF---DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 85 ~rk~aY~~-DI~YgT~~e~~f---DyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
.+...... |||..|-+-+.- |=+...-..++-..+ .-..+|+||||.|
T Consensus 424 i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I-----~W~RVILDEAH~I 475 (901)
T KOG4439|consen 424 ISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARI-----AWSRVILDEAHNI 475 (901)
T ss_pred CCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHh-----hHHHhhhhhhhhh
No 469
>PRK10436 hypothetical protein; Provisional
Probab=23.34 E-value=1.2e+02 Score=36.20 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=26.0
Q ss_pred HhCCC-eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 14 LHDGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 14 L~~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
..+|- ++--.||+|||-+.. +.+..+.....+|+|.-|
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~--a~l~~~~~~~~~i~TiED 254 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLY--SALQTLNTAQINICSVED 254 (462)
T ss_pred hcCCeEEEECCCCCChHHHHH--HHHHhhCCCCCEEEEecC
Confidence 34676 678899999997642 234556556788999654
No 470
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=23.28 E-value=96 Score=34.54 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+.-.+-|.|||.+++-.++..|..|++|.+|=-+
T Consensus 98 v~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D 131 (322)
T TIGR03815 98 VIGGRGGAGASTLAAALALAAARHGLRTLLVDAD 131 (322)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5566889999987666665567788888887543
No 471
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.09 E-value=1.8e+02 Score=32.20 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=32.0
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
+|.|||..+...+....-.|..|.+++...+=. .-.+++....+.+|+.+.
T Consensus 84 ~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri-~~~~ql~~~~~~~~~~~~ 134 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI-GTVQQLQDYVKTIGFEVI 134 (270)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHHhhhcCceEE
Confidence 999999876655553344578899998865421 123344555555666544
No 472
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=22.90 E-value=60 Score=37.06 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=40.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
++-..||+|||..+++|..+.+ +..+.|+-|.-+|... .....+.+|-.|-++..
T Consensus 3 lv~g~tGsGKt~~~viP~ll~~--~~s~vv~D~Kge~~~~----t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 3 LVFAPTRSGKGVGFVIPNLLTW--PGSVVVLDPKGENFEL----TSEHRRALGRKVFVFDP 57 (384)
T ss_pred eEecCCCCCCccEEEccchhcC--CCCEEEEccchhHHHH----HHHHHHHcCCeEEEEcC
Confidence 4567899999999999987653 5678888888888753 33444556778777654
No 473
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=22.83 E-value=2.5e+02 Score=32.22 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=12.0
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||||.|
T Consensus 141 ~~rVviIDeAd~l 153 (351)
T PRK09112 141 NWRIVIIDPADDM 153 (351)
T ss_pred CceEEEEEchhhc
Confidence 6789999999997
No 474
>PRK06893 DNA replication initiation factor; Validated
Probab=22.78 E-value=1.5e+02 Score=31.51 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=42.8
Q ss_pred ccccCCCcccH-----HHHHHHHhCCCeEEeCCCCCcc-------cccCCCeEEeChhH------HHH-HHHHHHHHHHh
Q 002898 291 LSGMTGTAKTE-----EKEFLKMFQMPVIEVPTNLPNI-------RVDLPIQSFATARG------KWE-YARQEVESMFR 351 (869)
Q Consensus 291 L~GmTGTa~te-----~~Ef~~iY~l~vv~IPt~~p~~-------R~d~~d~i~~t~~~------K~~-aii~ei~~~~~ 351 (869)
|+|-+||.+|- +.++.+- +.++..+|.+.... +....+.++.++-. .|. ++...+...++
T Consensus 44 l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~ 122 (229)
T PRK06893 44 IWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE 122 (229)
T ss_pred EECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH
Confidence 78999999982 3455432 45677777642111 22234555544332 233 45555666677
Q ss_pred cCCcEEEEecchhh
Q 002898 352 LGRPVLVGSTSVEN 365 (869)
Q Consensus 352 ~grPVLV~t~Si~~ 365 (869)
.|.+++|+|.+..-
T Consensus 123 ~~~~illits~~~p 136 (229)
T PRK06893 123 QGKTLLLISADCSP 136 (229)
T ss_pred cCCcEEEEeCCCCh
Confidence 78888777666533
No 475
>PRK09165 replicative DNA helicase; Provisional
Probab=22.74 E-value=3e+02 Score=33.08 Aligned_cols=112 Identities=20% Similarity=0.191 Sum_probs=59.4
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHH---------------cCCcEEEEec---CHHHHHHHHHHHHHHhhhcCCe
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------------TGEGVHVVTV---NDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL---------------~G~~V~VvT~---ndyLA~RDae~~~~ly~~LGLs 73 (869)
+..|. |+=..||-|||..++--|.-.|. .|.+|.+++. .+.|+.|-.. ...|++
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la------~~s~v~ 287 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILS------EQSEIS 287 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHH------HhcCCC
Confidence 34555 67788999999755444432233 2677877753 3344444221 223444
Q ss_pred EEEEc-CCCCHHHHHhc-------cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 74 VGLIQ-RGMIPEERRSN-------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 74 v~~i~-~~~~~~~rk~a-------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
...+. +.++.++.... ....+..-..+.+..+.++..+..- .... +++++|||=..-|
T Consensus 288 ~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l---~~~~---~~~lvvIDyLqli 353 (497)
T PRK09165 288 SSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRL---KRQH---GLDLLVVDYLQLI 353 (497)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHH---HHhc---CCCEEEEcchHhc
Confidence 33222 23444332221 1234555555566677787765421 1123 7889999976643
No 476
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=22.50 E-value=1.2e+02 Score=33.22 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=11.0
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
...+++|||+|.+
T Consensus 81 ~~~vl~iDEi~~l 93 (305)
T TIGR00635 81 EGDVLFIDEIHRL 93 (305)
T ss_pred cCCEEEEehHhhh
Confidence 4579999999986
No 477
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.45 E-value=1.6e+02 Score=35.56 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=19.9
Q ss_pred chhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 101 ELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 101 e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..+.|-+|+-+..-....... ...++||||||.+
T Consensus 107 ~~~vd~Ir~iie~a~~~P~~~---~~KVvIIDEa~~L 140 (507)
T PRK06645 107 KTSVDDIRRIIESAEYKPLQG---KHKIFIIDEVHML 140 (507)
T ss_pred CCCHHHHHHHHHHHHhccccC---CcEEEEEEChhhc
Confidence 345566666443211112233 6789999999975
No 478
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=22.45 E-value=4.9e+02 Score=29.26 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=20.7
Q ss_pred CceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHHccc
Q 002898 125 PFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQ 171 (869)
Q Consensus 125 ~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~ 171 (869)
+..++|||+||.|- . ..++.+.+.|++
T Consensus 124 ~~kVvII~~ae~m~-~-------------------~aaNaLLK~LEE 150 (314)
T PRK07399 124 PRKVVVIEDAETMN-E-------------------AAANALLKTLEE 150 (314)
T ss_pred CceEEEEEchhhcC-H-------------------HHHHHHHHHHhC
Confidence 78999999999982 1 256778888865
No 479
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.33 E-value=1.2e+02 Score=36.95 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=11.5
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||+|.|
T Consensus 120 ~~kVvIIDEa~~L 132 (585)
T PRK14950 120 RYKVYIIDEVHML 132 (585)
T ss_pred CeEEEEEeChHhC
Confidence 6789999999976
No 480
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=22.24 E-value=1.5e+02 Score=26.60 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=30.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCC-CeEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGI-PHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi-~~~vLna~ 386 (869)
..+.||+|.|.+-..|...+..|+..|+ +..+|+++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG 90 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGG 90 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCC
Confidence 5678999999998889999999999998 46677764
No 481
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=22.11 E-value=2.8e+02 Score=24.99 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCcEEEEec------chhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCc
Q 002898 353 GRPVLVGST------SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (869)
Q Consensus 353 grPVLV~t~------Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g 404 (869)
.-||+||+. ..--|..+-+.|.+.|++...++-. ++.+-..++.+..|+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~-~~~~~~~~l~~~~g~~t 63 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDIL-EDEEVRQGLKEYSNWPT 63 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcC-CCHHHHHHHHHHhCCCC
Confidence 459999987 3556889999999999999998864 22232345666666543
No 482
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=22.10 E-value=2.5e+02 Score=32.80 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=43.0
Q ss_pred HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 002898 38 LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (869)
Q Consensus 38 l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~------~DI~YgT~ 99 (869)
+....+..+.|.|++..-+..-++. +...|+.+..+.+++++.+|..+.. .+|+++|.
T Consensus 237 l~~~~~~~~lVF~~t~~~~~~l~~~----L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd 300 (460)
T PRK11776 237 LLHHQPESCVVFCNTKKECQEVADA----LNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD 300 (460)
T ss_pred HHhcCCCceEEEECCHHHHHHHHHH----HHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 3445567899999997766655544 4556999999999999988876442 47888885
No 483
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=22.06 E-value=1.6e+02 Score=26.99 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=40.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMI 82 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~ 82 (869)
|+-|.-|.|=-...++ ..+.-.++.|||.-..||..|+..-..+++.+++.+.-+..+|+
T Consensus 5 iiD~PPGTgD~~l~~~----~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs 64 (81)
T PF10609_consen 5 IIDLPPGTGDEHLTLM----QYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMS 64 (81)
T ss_dssp EEE--SCSSSHHHHHH----HHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-
T ss_pred EEeCCCCCCcHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 4556667776543332 33445688999999999999999999999999999988887874
No 484
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.06 E-value=4e+02 Score=30.44 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=48.5
Q ss_pred CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc-CCCCHHHHHhccCCCeEEECCCchh
Q 002898 44 EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ-RGMIPEERRSNYRCDITYTNNSELG 103 (869)
Q Consensus 44 ~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~-~~~~~~~rk~aY~~DI~YgT~~e~~ 103 (869)
+.|.|+..+...- .|..++..+++.+|+.|.++. ++.+.++-+.+-.|..+.....+.+
T Consensus 145 ~~VNiiG~~~~~~-~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~ 204 (398)
T PF00148_consen 145 RSVNIIGGSPLGP-GDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGG 204 (398)
T ss_dssp SEEEEEEESTBTH-HHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHH
T ss_pred CceEEecCcCCCc-ccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchh
Confidence 5799987664332 899999999999999998877 7788888888888998888888753
No 485
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.71 E-value=4.6e+02 Score=30.54 Aligned_cols=91 Identities=21% Similarity=0.182 Sum_probs=52.5
Q ss_pred hHhhhcC-ccccc-----CCCcccH----HHHHHHHhCCCeEEeCCCCCcccccCCCeEEe-ChhHHHHHHHHHHHHHH-
Q 002898 283 SLFKLYP-KLSGM-----TGTAKTE----EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFA-TARGKWEYARQEVESMF- 350 (869)
Q Consensus 283 ~~Fr~Y~-kL~Gm-----TGTa~te----~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~-t~~~K~~aii~ei~~~~- 350 (869)
+.++.|+ ++.++ |+|.|.. .+++.+..+.+|+.++|. . |. +..+=+.++++.+....
T Consensus 78 ~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~~pVi~v~tp--g---------f~g~~~~G~~~~~~alv~~~~ 146 (407)
T TIGR01279 78 QIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFAPAS--G---------LDYTFTQGEDTVLAALVPFCP 146 (407)
T ss_pred HHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHhhCCCEEEeeCC--C---------ccccHHHHHHHHHHHHHHhhc
Confidence 3445552 44444 4444542 356666678888888763 1 22 11222333333333221
Q ss_pred ---hc--CCcEEEEecchhhHHHHHHHHHHCCCCeE-Eee
Q 002898 351 ---RL--GRPVLVGSTSVENSEYLSDLLKQQGIPHN-VLN 384 (869)
Q Consensus 351 ---~~--grPVLV~t~Si~~SE~ls~~L~~~gi~~~-vLn 384 (869)
.. +.=+|+|.-+......|.++|...|++.. ++-
T Consensus 147 ~~~~~~~~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lp 186 (407)
T TIGR01279 147 EAPASEQRALVLVGSVNDIVADQLRLELKQLGIPVVGFLP 186 (407)
T ss_pred cccCCCCCcEEEEeccChhhHHHHHHHHHHcCCeEEEEeC
Confidence 11 22277787777778899999999999987 664
No 486
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.57 E-value=1.7e+02 Score=30.92 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=20.5
Q ss_pred hCCCeEEecC--CCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 15 HDGSIAEMKT--GEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 15 ~~G~IaEm~T--GEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
..| .+++-| |-|||-++.--++-.+-.|..|.|+
T Consensus 21 ~~g-~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 21 EKG-LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred cCC-eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 344 444545 5566765555554455689999876
No 487
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=21.56 E-value=7.6e+02 Score=24.08 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=49.4
Q ss_pred ccccCCCcccH-HHHHHHHhCCCeEEeCCCCCc--ccccC-CCeE-EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhh
Q 002898 291 LSGMTGTAKTE-EKEFLKMFQMPVIEVPTNLPN--IRVDL-PIQS-FATARGKWEYARQEVESMFRLGRPVLVGSTSVEN 365 (869)
Q Consensus 291 L~GmTGTa~te-~~Ef~~iY~l~vv~IPt~~p~--~R~d~-~d~i-~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~ 365 (869)
+.|.+|+.+|. +..+.+..+..++..=..... .+... .... ......+...+.+.+......|..++|.+....
T Consensus 3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~~- 81 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSALK- 81 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEecccH-
Confidence 57999999874 677777666554432221110 01110 1101 112234445666666666677888776665442
Q ss_pred HHHHHHHHHHCCCCeEEeec
Q 002898 366 SEYLSDLLKQQGIPHNVLNA 385 (869)
Q Consensus 366 SE~ls~~L~~~gi~~~vLna 385 (869)
......++..+.++.++.-
T Consensus 82 -~~~r~~~~~~~~~~~~i~l 100 (163)
T TIGR01313 82 -RHYRDILREAEPNLHFIYL 100 (163)
T ss_pred -HHHHHHHHhcCCCEEEEEE
Confidence 3344566677766655543
No 488
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=21.54 E-value=51 Score=35.71 Aligned_cols=44 Identities=41% Similarity=0.673 Sum_probs=39.1
Q ss_pred chhhhhcCCeEEEeecCCCchhHHHHhhhc--cccCCCCCceeEEEeccchhhhhcc
Q 002898 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGR--AGRQGDPGSTRFMVSLQDEMFQKFS 605 (869)
Q Consensus 551 ~~~V~~~GGL~VIgTerhes~RiD~QlrGR--agRQGdpGss~f~lSleD~l~~~f~ 605 (869)
..+|..-|=.||.|+ |||| ||=+||....-|..+|+=+++++-|
T Consensus 162 GAEViA~GnI~VyG~-----------LRG~a~AG~~Gd~~A~I~a~~l~pelvsIag 207 (239)
T PRK05177 162 GAEVVAGGSIHVYGA-----------LRGRAIAGAAGNPSARIFCRKLEAELLAIDG 207 (239)
T ss_pred CCEEEeCCCEEEEEE-----------cceEEEeCCCCCCccEEEeccCCceEEEEee
Confidence 468889999999998 6676 6999999999999999999999854
No 489
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.46 E-value=1.7e+02 Score=35.49 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=11.5
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||||.|
T Consensus 119 ~~kVvIIDEad~l 131 (527)
T PRK14969 119 RFKVYIIDEVHML 131 (527)
T ss_pred CceEEEEcCcccC
Confidence 6789999999976
No 490
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=21.19 E-value=1.3e+02 Score=26.85 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=29.5
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 352 ~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
++.||++.|.+-..|...+..|+..|++..+|.++
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG 89 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGG 89 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCc
Confidence 46899999999888989999999999986566664
No 491
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=21.14 E-value=1e+02 Score=31.82 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=16.5
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
=..|+|||+-++.-.++.+|. ++..|+|
T Consensus 7 G~pGsGKS~~av~~~i~~~l~-~gr~V~t 34 (193)
T PF05707_consen 7 GKPGSGKSYYAVSYVIIPALK-KGRPVYT 34 (193)
T ss_dssp --TTSSHHHHHHHHHHH-GGG-S---EEE
T ss_pred cCCCCcHhHHHHHHHHHHHHh-CCCEEEE
Confidence 357999999777665556665 4777777
No 492
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=21.14 E-value=2.5e+02 Score=34.16 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=46.1
Q ss_pred HHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCC
Q 002898 35 AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNS 100 (869)
Q Consensus 35 pa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~~ 100 (869)
..++....|..+.|.|.+...+..-++.+ ...|++++...++|++++|.... ..+|+++|..
T Consensus 216 ~~~l~~~~~~~~IIf~~sr~~~e~la~~L----~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a 283 (591)
T TIGR01389 216 LDYLKKHRGQSGIIYASSRKKVEELAERL----ESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA 283 (591)
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHH----HhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech
Confidence 33445555778889999887776655554 45799999999999999887653 2589999973
No 493
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=21.06 E-value=3.4e+02 Score=33.85 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHHhcCCcEEEEecchhhHHHHHHHHH----HCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcC
Q 002898 348 SMFRLGRPVLVGSTSVENSEYLSDLLK----QQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (869)
Q Consensus 348 ~~~~~grPVLV~t~Si~~SE~ls~~L~----~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATn 411 (869)
.....|..+||.+++.+-++..++.++ ..|+++.+++++.+..+++..+.. ..| .-.|.|+|.
T Consensus 305 ~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~IvVgT~ 372 (681)
T PRK10917 305 AAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIVIGTH 372 (681)
T ss_pred HHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEEEchH
Confidence 334568889999999999887766554 457999999997543333322222 345 347889985
No 494
>PRK08181 transposase; Validated
Probab=20.95 E-value=1.1e+02 Score=33.82 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=22.3
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~nd 53 (869)
+.-=.+|.|||-. .++.-. ..-.|..|..++..+
T Consensus 110 ll~Gp~GtGKTHLa~Aia~~-a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 110 LLFGPPGGGKSHLAAAIGLA-LIENGWRVLFTRTTD 144 (269)
T ss_pred EEEecCCCcHHHHHHHHHHH-HHHcCCceeeeeHHH
Confidence 7777999999954 443332 223688887777643
No 495
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.93 E-value=1.2e+02 Score=33.08 Aligned_cols=33 Identities=36% Similarity=0.376 Sum_probs=23.9
Q ss_pred eEEecCCCcHHH-HHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTL-VSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTL-va~lpa~l~AL~G~~V~VvT~n 52 (869)
|.=++=|-|||- +|.|+.. .+..|+.|.+|=-.
T Consensus 6 i~s~kGGvG~TTltAnLA~a-L~~~G~~VlaID~d 39 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWA-LARLGESVLAIDLD 39 (243)
T ss_pred EecCCCCCCHHHHHHHHHHH-HHHCCCcEEEEeCC
Confidence 445677999985 5555554 67889999988653
No 496
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=20.82 E-value=2e+02 Score=25.39 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.1
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeec
Q 002898 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNA 385 (869)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna 385 (869)
..+++||+|.|.+-..|...+..|+..|.. ..+|.+
T Consensus 53 ~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~g 89 (96)
T cd01444 53 LDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAG 89 (96)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCC
Confidence 357899999999999999999999999985 345554
No 497
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=20.78 E-value=3e+02 Score=28.64 Aligned_cols=103 Identities=21% Similarity=0.241 Sum_probs=51.3
Q ss_pred CCCeEEe--cCCCcHHHHHHHHHHHHHHcC------CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHH
Q 002898 16 DGSIAEM--KTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERR 87 (869)
Q Consensus 16 ~G~IaEm--~TGEGKTLva~lpa~l~AL~G------~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk 87 (869)
.|.+.++ ..|+|||..+.-.++..++.+ .+|..++..+-. +.+.+..+.+.+|... +
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~---~~~rl~~~~~~~~~~~---------~--- 82 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTF---RPERLVQIAERFGLDP---------E--- 82 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCc---CHHHHHHHHHHhccCh---------H---
Confidence 4565544 699999987766665333332 577767665532 2234444445555421 1
Q ss_pred hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 88 SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 88 ~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.....|.+...... +-|.+.+..- ...+... .+...+|||-+.+++
T Consensus 83 -~~~~~i~~~~~~~~--~~l~~~l~~l-~~~l~~~-~~~~liVIDSis~~~ 128 (235)
T cd01123 83 -EVLDNIYVARAYNS--DHQLQLLEEL-EAILIES-SRIKLVIVDSVTALF 128 (235)
T ss_pred -hHhcCEEEEecCCH--HHHHHHHHHH-HHHHhhc-CCeeEEEEeCcHHHH
Confidence 11123444444321 2222211110 1112111 167899999998875
No 498
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=20.74 E-value=3e+02 Score=32.18 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=14.4
Q ss_pred CCCeEEecCCCcHHHHHHHH
Q 002898 16 DGSIAEMKTGEGKTLVSTLA 35 (869)
Q Consensus 16 ~G~IaEm~TGEGKTLva~lp 35 (869)
.|-+.-=..|.|||+.+-..
T Consensus 180 kgvLL~GppGTGKT~LAkal 199 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAV 199 (398)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34477778999999876443
No 499
>PRK06921 hypothetical protein; Provisional
Probab=20.71 E-value=1.1e+02 Score=33.45 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=20.8
Q ss_pred eEEecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCHH
Q 002898 19 IAEMKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 19 IaEm~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~ndy 54 (869)
+.-=.||.|||.. .+++-.+..-.|..|..++..+.
T Consensus 121 ~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 121 ALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred EEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 5555799999954 44333221111777777776443
No 500
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=20.62 E-value=1.2e+02 Score=28.63 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=30.4
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCC--CeEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGI--PHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi--~~~vLna~ 386 (869)
...+||+|+|.+-..|...+..|...|+ ....|.++
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG 107 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGG 107 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecch
Confidence 5678999999998899999999999999 35566664
Done!