Query 002898
Match_columns 869
No_of_seqs 264 out of 1622
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipc_A Preprotein translocase 100.0 6E-196 2E-200 1725.7 62.5 738 1-868 78-904 (997)
2 3jux_A Protein translocase sub 100.0 4E-187 1E-191 1627.2 65.2 660 1-868 74-784 (822)
3 1nkt_A Preprotein translocase 100.0 8E-177 3E-181 1567.9 73.6 718 1-868 110-831 (922)
4 2fsf_A Preprotein translocase 100.0 2E-171 5E-176 1520.6 57.6 698 1-868 73-789 (853)
5 1tf5_A Preprotein translocase 100.0 7E-164 2E-168 1458.3 68.6 667 1-868 82-749 (844)
6 2db3_A ATP-dependent RNA helic 100.0 7.3E-28 2.5E-32 271.6 31.0 277 2-420 78-367 (434)
7 2j0s_A ATP-dependent RNA helic 99.9 2.4E-26 8.1E-31 254.0 28.0 273 2-420 59-343 (410)
8 1s2m_A Putative ATP-dependent 99.9 1.5E-25 5.2E-30 246.3 32.6 273 2-420 43-325 (400)
9 2i4i_A ATP-dependent RNA helic 99.9 4.4E-26 1.5E-30 251.6 26.2 279 2-420 37-343 (417)
10 1xti_A Probable ATP-dependent 99.9 2.1E-25 7.3E-30 243.7 30.4 274 2-420 30-317 (391)
11 1hv8_A Putative ATP-dependent 99.9 3.1E-25 1.1E-29 239.1 31.2 271 2-420 28-305 (367)
12 3i5x_A ATP-dependent RNA helic 99.9 7.4E-25 2.5E-29 253.3 34.3 284 2-420 94-409 (563)
13 3eiq_A Eukaryotic initiation f 99.9 4.5E-25 1.5E-29 242.9 29.0 273 2-420 62-347 (414)
14 3pey_A ATP-dependent RNA helic 99.9 9.7E-25 3.3E-29 237.6 30.1 272 2-420 27-310 (395)
15 3sqw_A ATP-dependent RNA helic 99.9 2.3E-24 7.7E-29 251.5 30.0 284 2-420 43-358 (579)
16 3oiy_A Reverse gyrase helicase 99.9 1.9E-24 6.5E-29 240.4 27.6 124 2-138 21-152 (414)
17 2z0m_A 337AA long hypothetical 99.9 1.7E-24 5.8E-29 231.1 24.7 124 2-138 16-142 (337)
18 2v1x_A ATP-dependent DNA helic 99.9 2.9E-24 9.8E-29 252.5 28.0 272 2-420 44-334 (591)
19 1oyw_A RECQ helicase, ATP-depe 99.9 6.6E-24 2.3E-28 245.8 29.8 266 2-420 25-303 (523)
20 3fht_A ATP-dependent RNA helic 99.9 1.1E-23 3.9E-28 231.2 29.6 274 2-420 47-333 (412)
21 1fuu_A Yeast initiation factor 99.9 2.5E-24 8.5E-29 235.1 16.8 126 2-138 43-175 (394)
22 1wp9_A ATP-dependent RNA helic 99.9 9.2E-23 3.1E-27 225.5 24.6 127 2-138 9-138 (494)
23 4a2p_A RIG-I, retinoic acid in 99.9 5.1E-22 1.7E-26 226.9 27.6 128 1-138 6-143 (556)
24 3fmp_B ATP-dependent RNA helic 99.9 8.2E-24 2.8E-28 240.1 12.7 277 2-420 114-400 (479)
25 3tbk_A RIG-I helicase domain; 99.9 1E-21 3.4E-26 223.7 27.4 129 1-138 3-140 (555)
26 3fho_A ATP-dependent RNA helic 99.9 7.9E-23 2.7E-27 235.4 18.3 272 2-420 141-424 (508)
27 4gl2_A Interferon-induced heli 99.9 1.4E-21 4.7E-26 231.5 20.4 128 1-137 6-148 (699)
28 1gm5_A RECG; helicase, replica 99.9 2.3E-21 7.7E-26 234.1 20.8 259 2-420 368-656 (780)
29 4a2q_A RIG-I, retinoic acid in 99.9 2E-20 6.7E-25 226.5 28.9 127 2-138 248-384 (797)
30 2eyq_A TRCF, transcription-rep 99.9 3.3E-20 1.1E-24 232.6 31.3 261 2-420 603-881 (1151)
31 2p6r_A Afuhel308 helicase; pro 99.9 1E-20 3.6E-25 225.5 22.5 125 2-138 25-151 (702)
32 2va8_A SSO2462, SKI2-type heli 99.9 5.5E-20 1.9E-24 219.5 28.2 125 2-138 30-158 (715)
33 2ykg_A Probable ATP-dependent 99.8 2.4E-20 8E-25 220.8 22.8 127 2-138 13-149 (696)
34 4a2w_A RIG-I, retinoic acid in 99.8 6E-20 2E-24 226.2 25.0 128 2-138 248-384 (936)
35 2oca_A DAR protein, ATP-depend 99.8 8.6E-21 2.9E-25 216.8 15.5 123 2-138 113-238 (510)
36 2zj8_A DNA helicase, putative 99.8 4.9E-20 1.7E-24 220.4 22.2 125 2-138 23-151 (720)
37 3l9o_A ATP-dependent RNA helic 99.8 3E-19 1E-23 223.1 28.9 118 2-138 184-303 (1108)
38 4a4z_A Antiviral helicase SKI2 99.8 3.7E-19 1.2E-23 220.3 28.8 125 2-144 39-165 (997)
39 1gku_B Reverse gyrase, TOP-RG; 99.8 6.4E-20 2.2E-24 228.4 19.9 120 3-138 58-188 (1054)
40 4ddu_A Reverse gyrase; topoiso 99.8 4.4E-19 1.5E-23 221.5 25.1 124 2-138 78-209 (1104)
41 2fwr_A DNA repair protein RAD2 99.8 2.4E-21 8.2E-26 219.3 2.0 110 2-138 93-205 (472)
42 2xgj_A ATP-dependent RNA helic 99.8 1.7E-18 5.8E-23 214.5 27.0 120 2-141 86-207 (1010)
43 2jlq_A Serine protease subunit 99.8 1E-19 3.5E-24 206.8 13.9 115 2-137 4-122 (451)
44 2z83_A Helicase/nucleoside tri 99.8 1.6E-18 5.6E-23 197.4 13.5 105 13-137 17-124 (459)
45 2whx_A Serine protease/ntpase/ 99.7 2.3E-18 7.8E-23 203.5 11.9 116 2-137 171-289 (618)
46 3o8b_A HCV NS3 protease/helica 99.7 1.2E-17 4.1E-22 198.0 12.8 99 14-136 229-329 (666)
47 3h1t_A Type I site-specific re 99.7 2.6E-16 8.9E-21 183.6 22.3 122 2-138 178-315 (590)
48 1yks_A Genome polyprotein [con 99.7 2.5E-17 8.5E-22 186.8 12.6 65 352-421 176-241 (440)
49 4f92_B U5 small nuclear ribonu 99.7 2.4E-16 8.1E-21 203.9 23.1 125 3-137 80-219 (1724)
50 2v6i_A RNA helicase; membrane, 99.7 1.2E-16 4E-21 180.7 17.1 99 19-137 6-105 (431)
51 2xau_A PRE-mRNA-splicing facto 99.7 3.6E-17 1.2E-21 197.8 13.2 118 2-136 93-219 (773)
52 4f92_B U5 small nuclear ribonu 99.7 1.2E-15 4.1E-20 197.4 25.3 125 3-137 927-1058(1724)
53 2wv9_A Flavivirin protease NS2 99.7 6.8E-17 2.3E-21 192.6 11.4 65 352-421 409-474 (673)
54 1z63_A Helicase of the SNF2/RA 99.7 4.5E-15 1.5E-19 169.1 25.8 86 335-420 323-411 (500)
55 3dmq_A RNA polymerase-associat 99.7 2.8E-15 9.4E-20 185.4 25.9 86 333-420 485-573 (968)
56 3i32_A Heat resistant RNA depe 99.6 4.6E-16 1.6E-20 168.6 10.3 88 330-420 7-95 (300)
57 3fe2_A Probable ATP-dependent 99.6 5.8E-15 2E-19 153.0 17.3 129 2-141 51-191 (242)
58 3rc3_A ATP-dependent RNA helic 99.6 2E-14 6.9E-19 171.3 24.0 67 354-421 321-390 (677)
59 3eaq_A Heat resistant RNA depe 99.6 1.6E-15 5.5E-20 155.5 11.1 89 329-420 9-98 (212)
60 3ly5_A ATP-dependent RNA helic 99.6 1.1E-14 3.7E-19 153.6 16.9 144 2-170 76-230 (262)
61 2pl3_A Probable ATP-dependent 99.6 4.6E-14 1.6E-18 145.1 17.4 130 2-141 47-186 (236)
62 1wrb_A DJVLGB; RNA helicase, D 99.5 8.9E-14 3E-18 144.7 14.8 127 2-138 45-187 (253)
63 3ber_A Probable ATP-dependent 99.5 9.4E-14 3.2E-18 145.4 14.7 128 2-138 65-199 (249)
64 3dkp_A Probable ATP-dependent 99.5 2.3E-14 7.8E-19 148.2 9.1 131 2-140 51-190 (245)
65 1q0u_A Bstdead; DEAD protein, 99.5 8.5E-14 2.9E-18 141.7 13.2 126 2-138 26-163 (219)
66 2oxc_A Probable ATP-dependent 99.5 9.8E-14 3.4E-18 142.7 13.8 126 2-138 46-179 (230)
67 3iuy_A Probable ATP-dependent 99.5 1.2E-13 4.1E-18 141.3 14.3 126 2-138 42-180 (228)
68 1c4o_A DNA nucleotide excision 99.5 4.6E-12 1.6E-16 150.9 29.7 135 279-420 371-506 (664)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 3.7E-13 1.3E-17 167.0 19.2 121 2-138 271-414 (1038)
70 1vec_A ATP-dependent RNA helic 99.5 2.5E-13 8.7E-18 136.1 14.6 142 2-170 25-175 (206)
71 3mwy_W Chromo domain-containin 99.5 2.8E-12 9.7E-17 155.5 26.3 86 335-420 554-642 (800)
72 3fmo_B ATP-dependent RNA helic 99.5 7.2E-14 2.5E-18 150.7 10.5 127 2-138 114-248 (300)
73 1z3i_X Similar to RAD54-like; 99.5 7.4E-12 2.5E-16 148.5 28.1 86 335-420 397-486 (644)
74 3bor_A Human initiation factor 99.5 1.1E-13 3.8E-18 143.1 10.9 126 2-138 52-186 (237)
75 1t6n_A Probable ATP-dependent 99.4 3.7E-13 1.3E-17 136.7 12.9 127 2-139 36-172 (220)
76 1qde_A EIF4A, translation init 99.4 3.7E-13 1.3E-17 136.9 12.5 126 2-138 36-168 (224)
77 2gxq_A Heat resistant RNA depe 99.4 1.1E-12 3.9E-17 131.2 13.7 124 2-138 23-157 (207)
78 1t5i_A C_terminal domain of A 99.4 3.1E-12 1.1E-16 126.8 14.6 88 330-420 10-98 (172)
79 2hjv_A ATP-dependent RNA helic 99.4 8.1E-12 2.8E-16 122.3 16.9 88 330-420 14-102 (163)
80 2jgn_A DBX, DDX3, ATP-dependen 99.3 6.2E-12 2.1E-16 126.3 12.5 89 330-420 24-113 (185)
81 3b6e_A Interferon-induced heli 99.3 2.3E-12 7.8E-17 129.2 8.5 133 1-138 32-175 (216)
82 2p6n_A ATP-dependent RNA helic 99.3 5.7E-12 1.9E-16 127.4 11.3 87 330-420 34-121 (191)
83 2rb4_A ATP-dependent RNA helic 99.3 3.5E-11 1.2E-15 119.0 14.9 83 335-420 18-101 (175)
84 1fuk_A Eukaryotic initiation f 99.3 2.9E-11 9.8E-16 118.5 14.1 85 333-420 11-97 (165)
85 2vl7_A XPD; helicase, unknown 99.2 4.5E-10 1.5E-14 130.6 19.6 131 2-144 7-192 (540)
86 2d7d_A Uvrabc system protein B 99.1 1.1E-09 3.7E-14 130.5 19.9 135 279-420 377-512 (661)
87 1rif_A DAR protein, DNA helica 99.1 1.2E-10 4E-15 123.5 8.5 123 2-138 113-238 (282)
88 2yjt_D ATP-dependent RNA helic 98.6 2E-11 6.8E-16 120.3 0.0 82 336-420 15-97 (170)
89 3crv_A XPD/RAD3 related DNA he 99.0 8E-10 2.7E-14 128.6 11.7 131 1-145 2-191 (551)
90 3llm_A ATP-dependent RNA helic 98.8 4E-09 1.4E-13 109.0 7.2 123 3-141 62-192 (235)
91 1z5z_A Helicase of the SNF2/RA 98.8 1.6E-08 5.4E-13 107.9 12.0 88 333-420 92-182 (271)
92 2fz4_A DNA repair protein RAD2 98.8 3.2E-08 1.1E-12 103.0 11.8 110 2-138 93-205 (237)
93 4a15_A XPD helicase, ATP-depen 97.8 4.4E-05 1.5E-09 90.3 10.0 78 2-79 3-87 (620)
94 1w36_D RECD, exodeoxyribonucle 97.0 0.0007 2.4E-08 79.9 7.0 70 4-74 151-227 (608)
95 1pjr_A PCRA; DNA repair, DNA r 96.0 0.43 1.5E-05 57.2 22.2 105 4-137 13-122 (724)
96 1uaa_A REP helicase, protein ( 95.8 0.12 4.2E-06 61.1 16.3 109 1-137 1-114 (673)
97 3lfu_A DNA helicase II; SF1 he 95.6 2.1 7E-05 49.9 25.3 104 5-137 12-120 (647)
98 2gk6_A Regulator of nonsense t 94.0 0.21 7.1E-06 59.0 11.3 60 5-64 183-245 (624)
99 4b3f_X DNA-binding protein smu 93.0 0.28 9.6E-06 57.9 10.3 59 5-63 192-253 (646)
100 2xzl_A ATP-dependent helicase 92.6 0.39 1.3E-05 58.5 10.9 61 5-65 363-426 (802)
101 2wjy_A Regulator of nonsense t 92.2 0.36 1.2E-05 58.7 9.9 60 5-64 359-421 (800)
102 1xx6_A Thymidine kinase; NESG, 90.8 0.26 9E-06 49.6 5.6 29 24-52 17-45 (191)
103 3cpe_A Terminase, DNA packagin 89.4 1.2 4.2E-05 52.0 10.6 70 2-71 163-236 (592)
104 2o0j_A Terminase, DNA packagin 88.7 1.8 6.1E-05 48.3 10.8 70 2-71 163-236 (385)
105 2orw_A Thymidine kinase; TMTK, 88.0 0.4 1.4E-05 47.6 4.5 30 23-52 11-40 (184)
106 3e1s_A Exodeoxyribonuclease V, 86.1 1.1 3.8E-05 52.4 7.5 60 4-63 191-252 (574)
107 1g5t_A COB(I)alamin adenosyltr 84.7 6.1 0.00021 40.1 11.2 36 16-51 28-64 (196)
108 1ls1_A Signal recognition part 83.3 3.4 0.00012 44.0 9.2 53 22-75 105-157 (295)
109 3kl4_A SRP54, signal recogniti 83.1 2.7 9.4E-05 47.5 8.8 54 22-76 104-157 (433)
110 3dm5_A SRP54, signal recogniti 82.5 2.7 9.2E-05 47.8 8.3 53 23-76 108-160 (443)
111 2d7d_A Uvrabc system protein B 82.0 2.1 7.3E-05 50.8 7.6 64 2-68 12-82 (661)
112 1vma_A Cell division protein F 81.9 3.1 0.00011 44.7 8.3 51 23-74 112-162 (306)
113 3u4q_A ATP-dependent helicase/ 79.9 5.1 0.00017 51.0 10.5 123 3-138 11-140 (1232)
114 3upu_A ATP-dependent DNA helic 78.5 6.3 0.00022 44.3 9.7 57 5-61 28-92 (459)
115 2kjq_A DNAA-related protein; s 77.4 1.3 4.5E-05 42.3 3.1 13 125-137 83-95 (149)
116 2b8t_A Thymidine kinase; deoxy 77.1 1.2 4.2E-05 45.8 3.1 30 24-53 21-50 (223)
117 3iqw_A Tail-anchored protein t 76.5 2.1 7.1E-05 46.7 4.8 34 19-52 20-53 (334)
118 1byi_A Dethiobiotin synthase; 74.8 2.8 9.5E-05 41.7 4.9 31 19-49 6-36 (224)
119 3e2i_A Thymidine kinase; Zn-bi 69.2 2.9 0.0001 43.2 3.6 53 20-76 30-85 (219)
120 2ph1_A Nucleotide-binding prot 68.0 4.1 0.00014 41.9 4.5 35 19-53 23-57 (262)
121 2woo_A ATPase GET3; tail-ancho 67.9 3.9 0.00013 44.1 4.4 35 19-53 23-57 (329)
122 2xxa_A Signal recognition part 67.4 15 0.00052 41.3 9.3 54 22-76 107-161 (433)
123 1g3q_A MIND ATPase, cell divis 67.0 4.5 0.00016 40.4 4.4 33 20-52 8-40 (237)
124 2ffh_A Protein (FFH); SRP54, s 66.6 13 0.00045 41.9 8.5 32 22-53 105-136 (425)
125 1zu4_A FTSY; GTPase, signal re 66.0 13 0.00045 40.0 8.1 31 23-53 113-143 (320)
126 3cio_A ETK, tyrosine-protein k 65.2 5.5 0.00019 42.4 4.9 34 19-52 109-142 (299)
127 4dzz_A Plasmid partitioning pr 65.0 4.8 0.00017 39.1 4.1 31 22-52 9-39 (206)
128 1hyq_A MIND, cell division inh 64.9 6 0.0002 40.3 4.9 33 19-51 7-39 (263)
129 3zq6_A Putative arsenical pump 64.6 6.9 0.00024 42.0 5.5 35 19-53 18-52 (324)
130 3q9l_A Septum site-determining 64.5 5.3 0.00018 40.4 4.4 33 20-52 8-40 (260)
131 1j8m_F SRP54, signal recogniti 63.7 13 0.00046 39.5 7.5 33 22-54 105-137 (297)
132 3bfv_A CAPA1, CAPB2, membrane 63.3 5.6 0.00019 41.7 4.4 32 21-52 89-120 (271)
133 3u61_B DNA polymerase accessor 62.6 5.2 0.00018 42.2 4.1 13 125-137 105-117 (324)
134 1t5i_A C_terminal domain of A 61.6 22 0.00074 34.2 8.0 62 34-99 22-89 (172)
135 2hjv_A ATP-dependent RNA helic 61.6 24 0.00083 33.3 8.3 63 33-99 25-93 (163)
136 3ea0_A ATPase, para family; al 61.1 6.2 0.00021 39.5 4.1 35 19-53 9-44 (245)
137 1fuk_A Eukaryotic initiation f 61.1 23 0.00079 33.5 8.0 62 34-99 21-88 (165)
138 2afh_E Nitrogenase iron protei 60.9 6.2 0.00021 41.0 4.3 30 22-51 9-38 (289)
139 3la6_A Tyrosine-protein kinase 60.3 7.2 0.00025 41.3 4.6 34 19-52 97-130 (286)
140 3ug7_A Arsenical pump-driving 60.3 8.5 0.00029 41.8 5.3 35 19-53 30-64 (349)
141 1wcv_1 SOJ, segregation protei 59.7 5.1 0.00017 41.0 3.3 33 21-53 13-45 (257)
142 1cp2_A CP2, nitrogenase iron p 59.4 6.6 0.00023 40.1 4.0 30 22-51 8-37 (269)
143 2xj4_A MIPZ; replication, cell 59.0 6.7 0.00023 41.0 4.1 33 21-53 11-43 (286)
144 2rb4_A ATP-dependent RNA helic 58.9 19 0.00064 34.5 7.0 62 34-99 25-92 (175)
145 2j37_W Signal recognition part 58.4 21 0.00072 41.1 8.4 52 22-75 108-160 (504)
146 2lnd_A De novo designed protei 57.6 29 0.00098 30.4 7.0 60 342-401 40-103 (112)
147 3end_A Light-independent proto 57.5 8.7 0.0003 40.3 4.7 33 19-52 46-78 (307)
148 3eaq_A Heat resistant RNA depe 57.2 32 0.0011 34.2 8.6 59 37-99 25-89 (212)
149 2oze_A ORF delta'; para, walke 57.1 9.5 0.00032 39.7 4.9 32 22-53 44-75 (298)
150 1a5t_A Delta prime, HOLB; zinc 57.0 34 0.0012 36.5 9.4 13 125-137 108-120 (334)
151 3k9g_A PF-32 protein; ssgcid, 56.7 6.4 0.00022 40.3 3.4 34 19-53 32-65 (267)
152 3kjh_A CO dehydrogenase/acetyl 56.6 5.2 0.00018 39.9 2.7 31 23-53 8-38 (254)
153 3dmn_A Putative DNA helicase; 55.1 58 0.002 31.4 9.9 76 333-420 41-116 (174)
154 3cwq_A Para family chromosome 54.1 11 0.00037 37.6 4.5 34 19-53 5-38 (209)
155 1ihu_A Arsenical pump-driving 53.4 12 0.00041 43.4 5.4 35 19-53 12-46 (589)
156 3syl_A Protein CBBX; photosynt 52.6 8.4 0.00029 40.0 3.6 17 19-35 71-87 (309)
157 2qby_B CDC6 homolog 3, cell di 51.9 11 0.00037 40.4 4.3 11 128-138 136-146 (384)
158 2qby_A CDC6 homolog 1, cell di 51.8 29 0.001 36.6 7.7 14 125-138 128-141 (386)
159 2v1u_A Cell division control p 51.6 18 0.00062 38.3 6.1 14 125-138 130-143 (387)
160 2cvh_A DNA repair and recombin 51.5 11 0.00039 36.7 4.1 36 15-53 18-55 (220)
161 3hjh_A Transcription-repair-co 51.2 15 0.00052 42.0 5.6 56 352-419 381-436 (483)
162 2woj_A ATPase GET3; tail-ancho 51.1 14 0.00047 40.4 5.1 34 19-52 22-57 (354)
163 1d2n_A N-ethylmaleimide-sensit 51.0 12 0.00039 38.5 4.3 65 23-137 72-136 (272)
164 4a15_A XPD helicase, ATP-depen 50.2 53 0.0018 38.5 10.2 129 287-420 374-513 (620)
165 3i32_A Heat resistant RNA depe 48.0 41 0.0014 35.7 8.1 61 35-99 20-86 (300)
166 3te6_A Regulatory protein SIR3 47.6 12 0.00041 40.5 3.9 14 125-138 132-145 (318)
167 3pg5_A Uncharacterized protein 46.4 11 0.00037 41.1 3.3 32 22-53 9-40 (361)
168 3vfd_A Spastin; ATPase, microt 45.1 25 0.00086 38.3 6.0 14 125-138 207-220 (389)
169 2z43_A DNA repair and recombin 43.7 61 0.0021 34.4 8.6 38 16-53 106-151 (324)
170 3kyp_A Pfnaps, nucleosome asse 43.2 43 0.0015 33.6 6.9 45 633-677 3-47 (193)
171 2chg_A Replication factor C sm 43.1 19 0.00066 34.4 4.2 13 125-137 102-114 (226)
172 2r6a_A DNAB helicase, replicat 43.0 82 0.0028 35.2 9.9 113 14-138 200-326 (454)
173 2px0_A Flagellar biosynthesis 42.9 20 0.00069 38.1 4.7 33 22-54 112-145 (296)
174 1fnn_A CDC6P, cell division co 42.6 27 0.00093 37.1 5.7 13 125-137 125-137 (389)
175 3g5j_A Putative ATP/GTP bindin 42.3 41 0.0014 30.2 6.1 36 351-386 86-123 (134)
176 3io3_A DEHA2D07832P; chaperone 42.1 22 0.00075 38.8 4.9 34 19-52 22-57 (348)
177 3oiy_A Reverse gyrase helicase 40.7 73 0.0025 34.4 8.9 60 351-411 62-125 (414)
178 3fwy_A Light-independent proto 40.5 19 0.00066 38.6 4.1 30 23-52 56-85 (314)
179 3fht_A ATP-dependent RNA helic 40.3 67 0.0023 34.1 8.4 66 30-99 253-324 (412)
180 1n0w_A DNA repair protein RAD5 39.7 49 0.0017 32.6 6.7 14 125-138 119-132 (243)
181 3sxu_A DNA polymerase III subu 39.0 39 0.0013 32.6 5.5 75 336-423 22-104 (150)
182 1sxj_A Activator 1 95 kDa subu 38.5 51 0.0017 37.5 7.4 82 23-158 85-194 (516)
183 4b4t_L 26S protease subunit RP 38.4 15 0.0005 41.7 2.8 99 248-364 175-284 (437)
184 3pvs_A Replication-associated 37.0 30 0.001 38.9 5.2 13 125-137 106-118 (447)
185 3b9p_A CG5977-PA, isoform A; A 36.6 27 0.00092 36.1 4.3 62 23-138 62-126 (297)
186 3igf_A ALL4481 protein; two-do 36.5 20 0.00069 39.6 3.5 31 21-51 8-38 (374)
187 1s2m_A Putative ATP-dependent 36.3 83 0.0028 33.4 8.3 62 34-99 249-316 (400)
188 2jgn_A DBX, DDX3, ATP-dependen 35.9 59 0.002 31.5 6.5 59 37-99 39-104 (185)
189 1xti_A Probable ATP-dependent 35.9 76 0.0026 33.5 7.9 62 34-99 241-308 (391)
190 3rc1_A Sugar 3-ketoreductase; 35.5 77 0.0026 33.9 7.9 102 302-410 66-174 (350)
191 2r8r_A Sensor protein; KDPD, P 35.0 44 0.0015 34.5 5.5 35 19-53 10-44 (228)
192 3hix_A ALR3790 protein; rhodan 35.0 51 0.0017 29.0 5.3 37 350-386 49-86 (106)
193 3crv_A XPD/RAD3 related DNA he 34.7 93 0.0032 35.6 8.9 129 284-421 310-457 (551)
194 3fkq_A NTRC-like two-domain pr 34.7 27 0.00093 38.0 4.2 34 19-52 148-181 (373)
195 3of5_A Dethiobiotin synthetase 34.1 37 0.0013 34.5 4.9 31 19-49 9-39 (228)
196 2p6n_A ATP-dependent RNA helic 33.4 78 0.0027 30.9 6.9 54 42-99 53-112 (191)
197 1sxj_C Activator 1 40 kDa subu 33.3 28 0.00096 37.0 3.9 13 125-137 110-122 (340)
198 3fgn_A Dethiobiotin synthetase 33.3 44 0.0015 34.8 5.3 47 4-50 10-62 (251)
199 2e50_A Protein SET; histone ch 33.2 77 0.0026 32.6 7.0 48 630-677 30-77 (225)
200 4b4t_J 26S protease regulatory 32.6 23 0.00079 39.7 3.2 98 249-364 143-251 (405)
201 3ec7_A Putative dehydrogenase; 32.0 1.3E+02 0.0043 32.4 8.9 104 302-410 62-173 (357)
202 1oyw_A RECQ helicase, ATP-depe 31.9 89 0.003 35.6 8.0 62 35-100 228-295 (523)
203 2z4s_A Chromosomal replication 31.8 44 0.0015 37.4 5.3 14 125-138 194-207 (440)
204 3gk5_A Uncharacterized rhodane 31.7 43 0.0015 29.6 4.3 36 351-386 53-88 (108)
205 1sxj_B Activator 1 37 kDa subu 31.2 28 0.00096 35.9 3.4 13 125-137 107-119 (323)
206 1xwi_A SKD1 protein; VPS4B, AA 31.2 37 0.0013 36.1 4.5 65 23-137 53-117 (322)
207 3mz0_A Inositol 2-dehydrogenas 30.8 1.2E+02 0.0043 32.0 8.6 104 302-410 41-152 (344)
208 2qgz_A Helicase loader, putati 30.5 40 0.0014 35.8 4.5 35 19-53 156-191 (308)
209 2w58_A DNAI, primosome compone 30.5 41 0.0014 32.5 4.3 34 19-52 58-91 (202)
210 3m1f_V VOPL, putative uncharac 30.2 15 0.00052 26.0 0.7 19 848-866 5-23 (31)
211 1gmx_A GLPE protein; transfera 30.0 67 0.0023 28.1 5.3 36 351-386 56-92 (108)
212 3hws_A ATP-dependent CLP prote 29.7 74 0.0025 34.0 6.6 18 19-36 55-72 (363)
213 3foj_A Uncharacterized protein 29.7 43 0.0015 29.0 3.9 35 351-385 54-88 (100)
214 3eme_A Rhodanese-like domain p 29.5 41 0.0014 29.3 3.7 35 351-385 54-88 (103)
215 3ez2_A Plasmid partition prote 28.9 37 0.0013 37.0 4.1 34 19-52 113-152 (398)
216 1v5w_A DMC1, meiotic recombina 28.7 74 0.0025 34.2 6.3 38 16-53 121-166 (343)
217 1w5s_A Origin recognition comp 28.2 87 0.003 33.4 6.8 13 125-137 138-150 (412)
218 2fsx_A RV0390, COG0607: rhodan 27.8 70 0.0024 29.8 5.2 36 351-386 78-114 (148)
219 1sxj_D Activator 1 41 kDa subu 27.8 59 0.002 34.0 5.3 13 125-137 133-145 (353)
220 2jtq_A Phage shock protein E; 27.6 1E+02 0.0035 25.6 5.8 33 351-383 39-72 (85)
221 3pey_A ATP-dependent RNA helic 27.4 1.2E+02 0.0043 31.6 7.8 63 33-99 233-301 (395)
222 4b4t_M 26S protease regulatory 27.2 26 0.00089 39.6 2.4 99 248-364 175-284 (434)
223 4b4t_I 26S protease regulatory 26.8 30 0.001 39.2 2.8 99 248-364 176-285 (437)
224 3ipz_A Monothiol glutaredoxin- 26.6 2.2E+02 0.0076 25.0 8.1 51 353-404 17-73 (109)
225 1um8_A ATP-dependent CLP prote 26.5 50 0.0017 35.5 4.5 15 125-139 137-151 (376)
226 2k0z_A Uncharacterized protein 26.2 70 0.0024 28.2 4.7 37 350-386 53-89 (110)
227 4b4t_K 26S protease regulatory 26.1 34 0.0012 38.5 3.1 99 248-364 166-275 (428)
228 1c4o_A DNA nucleotide excision 25.7 2.9E+02 0.0098 32.5 11.1 54 42-99 438-497 (664)
229 3u4q_B ATP-dependent helicase/ 25.5 95 0.0032 39.1 7.3 89 18-139 4-95 (1166)
230 3iwh_A Rhodanese-like domain p 25.5 53 0.0018 29.1 3.7 35 351-385 54-88 (103)
231 2zr9_A Protein RECA, recombina 25.4 50 0.0017 35.8 4.2 38 16-53 60-99 (349)
232 3moi_A Probable dehydrogenase; 25.3 1.6E+02 0.0055 31.8 8.4 63 346-410 81-149 (387)
233 1yrb_A ATP(GTP)binding protein 25.1 63 0.0022 32.4 4.7 33 19-52 18-50 (262)
234 1iqp_A RFCS; clamp loader, ext 25.1 35 0.0012 35.2 2.8 13 125-137 110-122 (327)
235 1hv8_A Putative ATP-dependent 24.9 1.4E+02 0.0047 30.9 7.5 54 42-99 237-296 (367)
236 3qxc_A Dethiobiotin synthetase 24.9 67 0.0023 33.1 4.9 31 19-49 26-56 (242)
237 4b4t_H 26S protease regulatory 24.8 40 0.0014 38.5 3.3 99 248-364 203-312 (467)
238 2j0s_A ATP-dependent RNA helic 24.5 1.5E+02 0.005 31.6 7.8 62 34-99 267-334 (410)
239 1wv9_A Rhodanese homolog TT165 24.4 63 0.0022 27.6 3.9 35 351-386 52-86 (94)
240 1ihu_A Arsenical pump-driving 24.4 69 0.0023 37.0 5.4 34 19-52 331-364 (589)
241 2j9r_A Thymidine kinase; TK1, 24.2 62 0.0021 33.1 4.4 47 25-75 38-84 (214)
242 3bh0_A DNAB-like replicative h 24.1 64 0.0022 34.2 4.7 37 15-51 66-104 (315)
243 1tq1_A AT5G66040, senescence-a 24.1 51 0.0017 30.1 3.4 36 351-386 80-116 (129)
244 4had_A Probable oxidoreductase 24.0 2E+02 0.0069 30.3 8.7 103 301-409 61-170 (350)
245 3ec2_A DNA replication protein 23.9 52 0.0018 31.2 3.6 40 16-55 37-79 (180)
246 1h6d_A Precursor form of gluco 23.8 3E+02 0.01 30.4 10.3 104 302-410 122-235 (433)
247 3pzx_A Formate--tetrahydrofola 23.8 53 0.0018 37.9 4.1 30 25-54 71-100 (557)
248 4hkt_A Inositol 2-dehydrogenas 23.7 1.8E+02 0.0063 30.4 8.2 62 347-410 81-148 (331)
249 2yan_A Glutaredoxin-3; oxidore 23.6 2.5E+02 0.0084 24.2 7.8 58 345-404 9-72 (105)
250 3db2_A Putative NADPH-dependen 23.5 1.7E+02 0.0057 31.1 7.9 61 347-409 84-150 (354)
251 4dik_A Flavoprotein; TM0755, e 23.3 3.2E+02 0.011 30.2 10.3 102 304-414 224-331 (410)
252 2dr3_A UPF0273 protein PH0284; 23.1 1.3E+02 0.0043 29.5 6.4 39 15-53 21-61 (247)
253 3ez9_A Para; DNA binding, wing 22.9 34 0.0012 37.4 2.3 34 19-52 116-155 (403)
254 4fb5_A Probable oxidoreductase 22.8 2.4E+02 0.0083 29.8 9.0 104 301-410 69-179 (393)
255 3flh_A Uncharacterized protein 22.5 56 0.0019 29.6 3.3 36 351-386 69-106 (124)
256 3ohs_X Trans-1,2-dihydrobenzen 22.4 2.4E+02 0.0083 29.6 8.8 103 302-410 42-151 (334)
257 2eyq_A TRCF, transcription-rep 22.4 56 0.0019 41.3 4.3 50 21-76 23-72 (1151)
258 3tbk_A RIG-I helicase domain; 22.3 2.4E+02 0.0084 31.0 9.2 54 353-410 52-109 (555)
259 3pfi_A Holliday junction ATP-d 22.2 77 0.0027 33.2 4.9 17 19-35 59-75 (338)
260 3e70_C DPA, signal recognition 22.2 97 0.0033 33.3 5.7 52 23-75 137-188 (328)
261 1qhx_A CPT, protein (chloramph 22.2 4.6E+02 0.016 24.1 11.2 27 291-317 8-35 (178)
262 4ddu_A Reverse gyrase; topoiso 21.7 2.3E+02 0.0077 35.7 9.6 60 351-411 119-182 (1104)
263 3hjh_A Transcription-repair-co 21.6 80 0.0027 36.0 5.1 26 351-376 37-62 (483)
264 2i4i_A ATP-dependent RNA helic 21.5 1.5E+02 0.0051 31.5 7.1 58 38-99 270-334 (417)
265 4a1f_A DNAB helicase, replicat 21.4 86 0.0029 34.1 5.1 38 14-51 43-82 (338)
266 2zts_A Putative uncharacterize 21.2 87 0.003 30.8 4.8 37 16-52 29-68 (251)
267 2v1x_A ATP-dependent DNA helic 21.2 1.6E+02 0.0056 34.1 7.7 54 42-99 266-325 (591)
268 2hhg_A Hypothetical protein RP 21.1 76 0.0026 28.9 4.0 36 351-386 84-120 (139)
269 1qxn_A SUD, sulfide dehydrogen 21.0 76 0.0026 29.3 4.0 36 351-386 80-116 (137)
270 1t6n_A Probable ATP-dependent 20.6 1.8E+02 0.0062 28.1 6.9 55 353-410 82-141 (220)
271 2db3_A ATP-dependent RNA helic 20.6 2.1E+02 0.0071 31.4 8.1 53 43-99 300-358 (434)
272 4amu_A Ornithine carbamoyltran 20.6 3.7E+02 0.013 29.6 9.9 90 3-99 159-259 (365)
273 2yhs_A FTSY, cell division pro 20.5 2E+02 0.0067 33.2 7.9 31 23-53 301-331 (503)
274 2pl3_A Probable ATP-dependent 20.5 3.3E+02 0.011 26.5 8.9 36 351-386 95-134 (236)
275 3ilm_A ALR3790 protein; rhodan 20.2 93 0.0032 29.0 4.4 37 350-386 53-90 (141)
276 3foz_A TRNA delta(2)-isopenten 20.1 1.6E+02 0.0054 31.9 6.7 70 291-361 15-108 (316)
277 2yjt_D ATP-dependent RNA helic 25.4 22 0.00076 33.9 0.0 58 38-99 25-88 (170)
No 1
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=5.5e-196 Score=1725.75 Aligned_cols=738 Identities=47% Similarity=0.736 Sum_probs=660.0
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+|||||++|+++||+|+||||+||||||++|+||+|+++|.|++|||||||+|||+||++||++||.+|||+|++++++
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg 157 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA 157 (997)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred CCCcHHHHhhcccccCCceeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|.|||+||||++||||||+|++..+++..+++++|+++|+|||||||||+|+|+||||||||.+....+|.
T Consensus 158 ~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~ 237 (997)
T 2ipc_A 158 STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYY 237 (997)
T ss_dssp CCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHH
T ss_pred CCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHH
Confidence 99999999999999999999999999999998887788888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCC------------CeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccC
Q 002898 161 VAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 161 ~~~~~~~~l~~~~------------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d 227 (869)
.++.++..|+++. ||++|++.++++||++|+.++|+++++++||++.+ .|.+||++||+|+++|++|
T Consensus 238 ~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd 317 (997)
T 2ipc_A 238 KMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317 (997)
T ss_dssp HHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHhcC
Confidence 9999999997643 99999999999999999999999999999999876 5999999999999999999
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 307 (869)
+||||+||+|+|||+||||+|+|||||+||||||||||||+|+++|+|+|+|||||||++|++|+||||||+|++.||++
T Consensus 318 ~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~ 397 (997)
T 2ipc_A 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQE 397 (997)
T ss_dssp HHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH
T ss_pred CCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHH-------------
Q 002898 308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK------------- 374 (869)
Q Consensus 308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~------------- 374 (869)
+||++|++||||+|++|+|+||.||.|+.+||.||+++|.++|++||||||||.||+.||.||++|+
T Consensus 398 iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~ 477 (997)
T 2ipc_A 398 IYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRL 477 (997)
T ss_dssp HHCCCEEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHH
T ss_pred HhCCCEEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------------------HCCCCeEEeecCCcchh
Q 002898 375 ---------------------------------------------------------------QQGIPHNVLNARPKYAA 391 (869)
Q Consensus 375 ---------------------------------------------------------------~~gi~~~vLna~~~~~~ 391 (869)
+.||||+|||| ++|+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNA--K~he 555 (997)
T 2ipc_A 478 ELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNA--KHHA 555 (997)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECS--SSHH
T ss_pred hhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccc--cchH
Confidence 78999999999 6899
Q ss_pred hHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHH
Q 002898 392 REAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLA 471 (869)
Q Consensus 392 ~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (869)
+||+||++||++|+||||||||||||||+|||||+++++..++... ++... + ...
T Consensus 556 ~EAeIIAqAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~----------------------~~~~~--~-~~~ 610 (997)
T 2ipc_A 556 REAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEG----------------------FDRYE--W-KVE 610 (997)
T ss_dssp HHHHHHHTTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSC----------------------SSTTH--H-HHH
T ss_pred HHHHHHHhcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhc----------------------ccccc--c-ccc
Confidence 9999999999999999999999999999999999999864321100 00000 0 000
Q ss_pred HHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccc
Q 002898 472 LLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEG 551 (869)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (869)
+. ...++.+.+ .|.. .+.+ ....++.++ +.+.++++.|.+++
T Consensus 611 ~~-----~~~~~~~~~--~~~~----------------~~~~--------------~~~~~~~~~-~~~~~~~~~~~~e~ 652 (997)
T 2ipc_A 611 LF-----IKKMVAGKE--EEAR----------------ALAQ--------------ELGIREELL-ERIREIREECKQDE 652 (997)
T ss_dssp HH-----HHHHHHTCH--HHHH----------------HHHH--------------HTTCCHHHH-HHHHHHHHHHHHHH
T ss_pred cc-----cccccccch--hhcc----------------ccch--------------hhhhhhhHH-HHHHHhhhhhhhhh
Confidence 00 000000000 0000 0000 001122222 23566899999999
Q ss_pred hhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhH
Q 002898 552 SEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAI 631 (869)
Q Consensus 552 ~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~ 631 (869)
++|+++|||||||||||||||||||||||||||||||||+|||||||||||+|| ++++.++|.++++++|+||+|+|+
T Consensus 653 ~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdLmr~fg--~~~~~~~m~~l~~~~~~~Ie~~~v 730 (997)
T 2ipc_A 653 ERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFA--SDRVIAMLDRMGFDDSEPIEHPMV 730 (997)
T ss_dssp HHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHHHHHSS--CTTHHHHHHHTCCCSSSCBCCHHH
T ss_pred hHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChHHHHhhc--hHHHHHHHHHcCCCCCCcccchHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 002898 632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYW 711 (869)
Q Consensus 632 ~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~w 711 (869)
+++|++||++||++||++||++|+||||||.||++||++|+.||++..+++++.|.+|++++++.+++.++++..++++|
T Consensus 731 ~~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~w 810 (997)
T 2ipc_A 731 TRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDW 810 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSSSC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhcCCcCChhhc
Confidence 99999999999999999999999999999999999999999999763368999999999999999999988777778899
Q ss_pred cHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccc
Q 002898 712 SLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDL 791 (869)
Q Consensus 712 dl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 791 (869)
|+++|...+...++.. .+ .++..|-
T Consensus 811 ~~~~l~~~~~~~~~~~---------~~---------------------------------------~~~~~~~------- 835 (997)
T 2ipc_A 811 DLEGLKATLLDTAPQL---------QD---------------------------------------FPFAELR------- 835 (997)
T ss_dssp CHHHHHHHHHHSSCCC---------CS---------------------------------------SHHHHHH-------
T ss_pred CHHHHHHHHHHhcCcc---------cC---------------------------------------CCHHHHh-------
Confidence 9999998876532210 00 0111220
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 792 TKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 792 ~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
..+.+++.++|.+.+.+.|..+ +..++++.|+++||.++|++||.+|++||++||+||+||+||+|||+
T Consensus 836 ------~~~~~~~~~~l~~~~~~~y~~k--~~~~~~~~~~~~er~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~ 904 (997)
T 2ipc_A 836 ------ALKAEEAVERLVEAALKAYEAR--EAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQK 904 (997)
T ss_dssp ------HSCSHHHHHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSS
T ss_pred ------ccCHHHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 1245778999999999999876 45578999999999999999999999999999999999999999997
No 2
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=3.7e-187 Score=1627.22 Aligned_cols=660 Identities=45% Similarity=0.725 Sum_probs=624.4
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC-
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR- 79 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~- 79 (869)
|||||||++||++||+|+||||+|||||||+|+||+||+||.|++|||||||+|||+||++||+|+|+||||+|+++++
T Consensus 74 ~r~~dvQligg~~L~~G~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~ 153 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSL 153 (822)
T ss_dssp CCCCHHHHHHHHHHHTTCEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CCCcHHHHHHHHHHhCCChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------CCCHHHHHhccCCCeEEECCCchhhhHHHHh
Q 002898 80 -------------------------------------------------GMIPEERRSNYRCDITYTNNSELGFDYLRDN 110 (869)
Q Consensus 80 -------------------------------------------------~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~ 110 (869)
++++++|+++|.||||||||++|||||||||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDn 233 (822)
T 3jux_A 154 GKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDN 233 (822)
T ss_dssp TEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHT
T ss_pred CcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHhHHhh
Confidence 6889999999999999999999999999999
Q ss_pred hccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhh
Q 002898 111 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEG 190 (869)
Q Consensus 111 l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G 190 (869)
|+.+.+++||| +++||||||||||||||||||||||||.+.++.+|..++.+++.|.++.||.+|++.++++||++|
T Consensus 234 m~~~~~~~vqR---~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G 310 (822)
T 3jux_A 234 LVLDYNDKVQR---GHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEG 310 (822)
T ss_dssp SCSSTTSCCCC---CCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHH
T ss_pred ccCCHHHhccC---CCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHH
Confidence 99999999998 999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCcc
Q 002898 191 IALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKI 269 (869)
Q Consensus 191 ~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i 269 (869)
+.++|+++++.+||++.+ ++.+||++||+|+++|++|+||||+||+|+|||++|||+|+|||||+||||||||||||+|
T Consensus 311 ~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i 390 (822)
T 3jux_A 311 VAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPI 390 (822)
T ss_dssp HHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCC
T ss_pred HHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCC
Confidence 999999999999999865 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHH
Q 002898 270 QADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESM 349 (869)
Q Consensus 270 ~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~ 349 (869)
+++++|+|+||||||||+|+||+||||||+++++||.++||++|++||||+|++|++.++.+|.+..+||.+|+++|.++
T Consensus 391 ~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~ 470 (822)
T 3jux_A 391 KEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKR 470 (822)
T ss_dssp CCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHH
Q 002898 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLA 429 (869)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~ 429 (869)
+.+|+||||||+|++.||.|+..|++.|++|++||| +++++|++++++||++|+||||||||||||||+|||
T Consensus 471 ~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhg--kq~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~------ 542 (822)
T 3jux_A 471 YKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNA--KYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGP------ 542 (822)
T ss_dssp HHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECS--CHHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCT------
T ss_pred hhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeC--CchHHHHHHHHhCCCCCeEEEEcchhhCCcCccCCc------
Confidence 999999999999999999999999999999999999 489999999999999999999999999999999983
Q ss_pred HHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhh
Q 002898 430 KKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQS 509 (869)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (869)
T Consensus 543 -------------------------------------------------------------------------------- 542 (822)
T 3jux_A 543 -------------------------------------------------------------------------------- 542 (822)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCc
Q 002898 510 MNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGS 589 (869)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGs 589 (869)
+|.++||||||+|++|+|+|+|+|++|||||||+||+
T Consensus 543 -------------------------------------------~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 543 -------------------------------------------GVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp -------------------------------------------TTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred -------------------------------------------chhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 5889999999999999999999999999999999999
Q ss_pred eeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 002898 590 TRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYD 669 (869)
Q Consensus 590 s~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~ 669 (869)
|+||+|+||++|+.|| ++++.++|+++++++|+||+|++++++|++||++||++||++||++|+||+|||.||++||+
T Consensus 580 a~~fvsleD~l~r~fg--~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~ 657 (822)
T 3jux_A 580 SIFFLSLEDDLLRIFG--SEQIGKVMNILKIEEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYS 657 (822)
T ss_dssp EEEEEETTSHHHHHTT--HHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhHHHHHhhh--HHHHHHHHHHcCCCCCceeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccc
Q 002898 670 LRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPE 749 (869)
Q Consensus 670 ~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (869)
+|++||.+ +++.+.|.+|++++++.+++.+.+ +++||+++|...+...+. .
T Consensus 658 ~R~~iL~~--~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~--------~--------------- 708 (822)
T 3jux_A 658 LRDQILLE--KDYDEYLKDIFEDVVSTRVEEFCS----GKNWDIESLKNSLSFFPA--------G--------------- 708 (822)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHSS----TTCCCCHHHHHHTTTSCS--------C---------------
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHHHHHhCC----hhhccHHHHHHHHHHhhc--------c---------------
Confidence 99999965 589999999999999999999875 568999999776542100 0
Q ss_pred cccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q 002898 750 LNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVY 829 (869)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~ 829 (869)
.+.++ . + ...+.++++++|.+.+.+.|..|.+ .++++
T Consensus 709 -------~~~~~---~-~-----------------------------~~~~~~~~~~~l~~~~~~~y~~k~~--~~~~~- 745 (822)
T 3jux_A 709 -------LFDLD---E-K-----------------------------QFSSSEELHDYLFNRLWEEYQRKKQ--EIGED- 745 (822)
T ss_dssp -------SCTTS---S-C-----------------------------CCSSHHHHHHHHHHHHHHHHHHHHH--HHGGG-
T ss_pred -------ccCcc---c-c-----------------------------ccCCHHHHHHHHHHHHHHHHHHHHH--HhhHH-
Confidence 00000 0 0 0014567899999999999987643 34566
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 830 MKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 830 ~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
++++||.++|++||.+|++||++||+||+|||||+||||
T Consensus 746 ~~~~er~i~L~~iD~~W~~hl~~md~Lr~~i~lr~y~q~ 784 (822)
T 3jux_A 746 YRKVIRFLMLRIIDDHWRRYLEEVEHVKEAVQLRSYGQK 784 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 999999999999999999999999999999999999997
No 3
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.6e-177 Score=1567.92 Aligned_cols=718 Identities=44% Similarity=0.699 Sum_probs=649.1
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|||||||++|+++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||+||++||++||.+|||+|++++++
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg 189 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT 189 (922)
T ss_dssp CCCCHHHHHHHHHHHTTEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCCHHHHHHHHhHhcCCEEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|+||||||||++||||||+|+|..+.+..++| +++|+|||||||||+|+|+||||||||.+....+|.
T Consensus 190 ~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr---~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 190 MTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR---GHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccC---CCCEEEEeChHHHHHhcCccceeecCCCCcchhHHH
Confidence 99999999999999999999999999999998877788888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEECCeEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~i 239 (869)
.++.++..|+++.||.+|++.++++||++|+.++|+++++++||++++ .+.++|.+||+|+.+|++|+||||+||+|+|
T Consensus 267 ~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vvi 346 (922)
T 1nkt_A 267 EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLI 346 (922)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEE
T ss_pred HHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEE
Confidence 999999999877899999999999999999999999999999999986 5899999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002898 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (869)
Q Consensus 240 vDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (869)
||++|||+|+|||||+|||||||+||||+|+++++|+++|||||||++|++|+||||||++++.||+++||++|++||||
T Consensus 347 VDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn 426 (922)
T 1nkt_A 347 VDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 426 (922)
T ss_dssp BCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCS
T ss_pred EecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH
Q 002898 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (869)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~ 399 (869)
+|++|+|++|.+|.+..+||.+|+++|.++|+.||||||||.|++.||.|+..|++.||+|++||| +++++|++|+++
T Consensus 427 ~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLna--k~~~rEa~iia~ 504 (922)
T 1nkt_A 427 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAV 504 (922)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS--SCHHHHHHHHHT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecC--ChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 578999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002898 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (869)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (869)
||++|+||||||||||||||++|||++++++..++.... .| .
T Consensus 505 agr~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~------~~----------------~---------------- 546 (922)
T 1nkt_A 505 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGL------DP----------------V---------------- 546 (922)
T ss_dssp TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTC------CT----------------T----------------
T ss_pred cCCCCeEEEecchhhcCccccCCCCHHHHHHHHHhhccc------cc----------------c----------------
Confidence 999999999999999999999999999998655432100 00 0
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (869)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (869)
. .+ ......|...+.++++.|.+++++|+++||
T Consensus 547 ---------------------~---------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 579 (922)
T 1nkt_A 547 ---------------------E---------TP-----------------EEYEAAWHSELPIVKEEASKEAKEVIEAGG 579 (922)
T ss_dssp ---------------------T---------SH-----------------HHHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred ---------------------c---------cc-----------------hhhHHHHHHHHHHHHHHHHHhhhHHHhcCC
Confidence 0 00 000122334566788999999999999999
Q ss_pred eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHH
Q 002898 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (869)
Q Consensus 560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (869)
||||||+||||+|||+||+||||||||||+|+||||+||+||++|| ++++..+|.++++++++||++++++++|++||
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~aQ 657 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIEAKMVTRAIKSAQ 657 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCCCHHHHHHHHHHH
T ss_pred cEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhh--hHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHH-hcCCCCCCCCcccHHHHHH
Q 002898 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIF-GNVDPLKHPRYWSLDKLLK 718 (869)
Q Consensus 640 ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~-~~~~~~~~~~~wdl~~L~~ 718 (869)
++||++||++||++|+||||||.||++||++|++||.+ +++++.|.+|++++++.+++ .+ +...+++||+++|..
T Consensus 658 kkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~--~~~~~~i~~~~~~~~~~~v~~~~--~~~~~~~w~~~~l~~ 733 (922)
T 1nkt_A 658 TQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG--ENLKDQALDMVRDVITAYVDGAT--GEGYAEDWDLDALWT 733 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHTT--SSSCSSCSCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhc--ccCCchhcCHHHHHH
Confidence 99999999999999999999999999999999999965 58999999999999999998 55 445678999999998
Q ss_pred HHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhcccccccccccc
Q 002898 719 EFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYR 798 (869)
Q Consensus 719 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 798 (869)
.+...++.. ++ +..|... +++ .....
T Consensus 734 ~~~~~~~~~-------~~-------------------------------------------~~~~~~~--~~~--~~~~~ 759 (922)
T 1nkt_A 734 ALKTLYPVG-------IT-------------------------------------------ADSLTRK--DHE--FERDD 759 (922)
T ss_dssp HHHHHSCCC-------SC-------------------------------------------TTTTC--------------
T ss_pred HHHHHcCCC-------CC-------------------------------------------HHHHhhh--hcc--ccccc
Confidence 887543210 00 0001000 000 00012
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 799 ATTNLLRKYLGDILIASYLNVVQESR--YDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 799 ~~~~~l~~~L~e~~~~~y~~k~~~~~--~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
.+.++++++|.+.+.+.|..+..... .+++.|+++||.++|++||.+|++||++||+||+|||||+|||+
T Consensus 760 ~~~~~~~~~l~~~~~~~y~~k~~~~~~~~~~~~~~~~er~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~ 831 (922)
T 1nkt_A 760 LTREELLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLNVIDRKWREHLYEMDYLKEGIGLRAMAQR 831 (922)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBTTB
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 34567788999999999987643221 16779999999999999999999999999999999999999997
No 4
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.6e-171 Score=1520.61 Aligned_cols=698 Identities=42% Similarity=0.668 Sum_probs=536.6
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+|||||++|+++||+|+||||+||||||++|+||+++++|.|++|||+|||+|||.||++||++||.+||++|++++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG 152 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG 152 (853)
T ss_dssp CCCCHHHHHHHHHHHSSEEEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCChHHHhhcccccCCeeeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|+|||+||||++|+||||||+|..+.+..+++ +++|+||||||+||+|+|++|||||||.+..+.+|.
T Consensus 153 ~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~---~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 153 MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---SCCEEEESCHHHHTTTTTTCEEEEEEC---------
T ss_pred CCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhccc---CCcEEEECchHHHHHhcCcccccccCCCccchhHHH
Confidence 99999999999999999999999999999998777788888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccC-----------CCeEEeCCCCeeeccHhhHHHHHHHh---cc----CCCCCCCC-cHHHHHHHHHHHH
Q 002898 161 VAAKVAELLVQG-----------LHYTVELKNNSVELTEEGIALAEMAL---ET----NDLWDEND-PWARFVMNALKAK 221 (869)
Q Consensus 161 ~~~~~~~~l~~~-----------~~y~~d~~~k~v~Lt~~G~~~~e~~~---~~----~~L~~~~~-~~~~~i~~Al~A~ 221 (869)
.++.++..|+++ .||.+|++.++++||+.|+.++|+++ ++ ++||++++ ++.++|++||+|+
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHH
Confidence 999999999753 49999999999999999999999998 55 57999976 5889999999999
Q ss_pred HHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH
Q 002898 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE 301 (869)
Q Consensus 222 ~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te 301 (869)
.+|++|+||+|+||+|+|||++|||+|+|||||+|||||||+||||+|+++++|+++||||+||++|++|+||||||+|+
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeE
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~ 381 (869)
+.||+++||++|++||||+|++|+|+||.+|.+..+||.+|+++|.++|..||||||||+|++.||.||..|++.||+|+
T Consensus 390 ~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~ 469 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 469 (853)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhh
Q 002898 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLS 461 (869)
Q Consensus 382 vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (869)
+||| +++++|++|+++||++|+||||||||||||||++||||++++... . +.
T Consensus 470 vLna--k~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~gn~~~~~~~~---------~-~~---------------- 521 (853)
T 2fsf_A 470 VLNA--KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAAL---------E-NP---------------- 521 (853)
T ss_dssp ECCT--TCHHHHHHHHHTTTSTTCEEEEESCCSSCSCCCTTCCHHHHHHHC---------S-SC----------------
T ss_pred EecC--ChhHHHHHHHHhcCCCCeEEEecccccCCcCccCCCchHhhhhhc---------c-cc----------------
Confidence 9999 578999999999999999999999999999999999999886210 0 00
Q ss_pred hhhhcchhHHHHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhh
Q 002898 462 EIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLK 541 (869)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (869)
+ .+.+.
T Consensus 522 -----------------------------------------------------------------~---------~~~~~ 527 (853)
T 2fsf_A 522 -----------------------------------------------------------------T---------AEQIE 527 (853)
T ss_dssp -----------------------------------------------------------------C---------SSHHH
T ss_pred -----------------------------------------------------------------h---------hHHHH
Confidence 0 00123
Q ss_pred hccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCC
Q 002898 542 DCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITND 621 (869)
Q Consensus 542 ~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~ 621 (869)
++++.|.+++++|.++||||||+|+||+|+|+|+||+||||||||||+|+||||+||++||.|| ++++..+|.+++++
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~--~~~~~~~~~~~~~~ 605 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA--SDRVSGMMRKLGMK 605 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTC--CHHHHTTGGGGCCC
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHHHhh--HHHHHHHHHhhCCC
Confidence 4677888999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhc
Q 002898 622 EDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGN 701 (869)
Q Consensus 622 ~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~ 701 (869)
+++||++++++++|++||+++|++||++||++|+||||||.||++||++|+.||.+ +++++.|.+|++++++.+++.+
T Consensus 606 ~~~~i~~~~~~~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~--~~~~~~i~~~~~~~~~~~~~~~ 683 (853)
T 2fsf_A 606 PGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV--SDVSETINSIREDVFKATIDAY 683 (853)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHTT
T ss_pred CccccchHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999965 5899999999999999999988
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhh
Q 002898 702 VDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLK 781 (869)
Q Consensus 702 ~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 781 (869)
+++...+++||+++|...+...++.. + ++.
T Consensus 684 ~~~~~~~~~w~~~~l~~~~~~~~~~~-------~-------------------------------------------~~~ 713 (853)
T 2fsf_A 684 IPPQSLEEMWDIPGLQERLKNDFDLD-------L-------------------------------------------PIA 713 (853)
T ss_dssp SCTTCCGGGCCHHHHHHHHHHHHCCC-------C-------------------------------------------CHH
T ss_pred cCccccchhhcHHHHHHHHHHHcCCC-------C-------------------------------------------CHH
Confidence 87777778999999998887643210 0 111
Q ss_pred hhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 002898 782 RWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVY 861 (869)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIg 861 (869)
.|... ....+.++++++|.+.+.+.|..+ +...+++.+++|||.+||++||.+|++||++||+||+|||
T Consensus 714 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~k--~~~~~~~~~~~~er~~~L~~iD~~W~~hl~~md~Lr~~i~ 782 (853)
T 2fsf_A 714 EWLDK---------EPELHEETLRERILAQSIEVYQRK--EEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIH 782 (853)
T ss_dssp HHHHH---------CTTCCHHHHHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhh---------cccCCHHHHHHHHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22110 002356788999999999999876 3456889999999999999999999999999999999999
Q ss_pred hhhcccc
Q 002898 862 HNIYFSQ 868 (869)
Q Consensus 862 LR~Y~q~ 868 (869)
||+||||
T Consensus 783 lr~y~q~ 789 (853)
T 2fsf_A 783 LRGYAQK 789 (853)
T ss_dssp TSSCSSS
T ss_pred hhhhccC
Confidence 9999997
No 5
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.7e-164 Score=1458.32 Aligned_cols=667 Identities=45% Similarity=0.737 Sum_probs=629.4
Q ss_pred CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG 80 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~ 80 (869)
|+|||||++|+++||+|+||||+|||||||+|+||+|++||.|++|||||||+|||.||++||++||.+|||+|++++++
T Consensus 82 ~~pt~VQ~~~ip~ll~G~Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg 161 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS 161 (844)
T ss_dssp CCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCcHHHHHhhHHHhCCCEEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898 81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP 160 (869)
Q Consensus 81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~ 160 (869)
+++++|+.+|+||||||||++||||||+|+|..+.+..+++ +++|+|||||||||+|+|+||||||||.+.++.+|+
T Consensus 162 ~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr---~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~ 238 (844)
T 1tf5_A 162 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR---PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYV 238 (844)
T ss_dssp SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC---CCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHH
T ss_pred CCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhccc---CCCEEEECchhhhhhhccccchhhcCCcccchhHHH
Confidence 99999999999999999999999999999998776778888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccCcceEEECCeEEE
Q 002898 161 VAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRDVQYIVRNGKALI 239 (869)
Q Consensus 161 ~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~I~i 239 (869)
.++.++..|+++.||.+|++.++++||++|+.++|+++++++||++++ .|.++|.+||+|+.+|++|+||+|+||+|+|
T Consensus 239 ~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~i 318 (844)
T 1tf5_A 239 QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318 (844)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEE
T ss_pred HHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEE
Confidence 999999999877799999999999999999999999999999999986 4889999999999999999999999999999
Q ss_pred EeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCC
Q 002898 240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTN 319 (869)
Q Consensus 240 vDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~ 319 (869)
||++|||+|+|||||+|||||||+||+|+|++++.|+++||||+||++|++++||||||++++.||.++||++|++||||
T Consensus 319 vDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn 398 (844)
T 1tf5_A 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 398 (844)
T ss_dssp BCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred eecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH
Q 002898 320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ 399 (869)
Q Consensus 320 ~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~ 399 (869)
+|++|.|+++.+|.+..+|+.+|++++.++|..|+||||||+|++.||.|+..|++.|++|++||| +++++|++++++
T Consensus 399 ~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg--~~~~rEr~ii~~ 476 (844)
T 1tf5_A 399 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEE 476 (844)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS--SCHHHHHHHHTT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC--CccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 478999999999
Q ss_pred cCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002898 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL 479 (869)
Q Consensus 400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (869)
||++|+||||||||||||||+||
T Consensus 477 ag~~g~VlIATdmAgRG~DI~l~--------------------------------------------------------- 499 (844)
T 1tf5_A 477 AGQKGAVTIATNMAGRGTDIKLG--------------------------------------------------------- 499 (844)
T ss_dssp TTSTTCEEEEETTSSTTCCCCCC---------------------------------------------------------
T ss_pred cCCCCeEEEeCCccccCcCcccc---------------------------------------------------------
Confidence 99999999999999999999998
Q ss_pred HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898 480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG 559 (869)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 559 (869)
++|+++||
T Consensus 500 ------------------------------------------------------------------------~~V~~~gg 507 (844)
T 1tf5_A 500 ------------------------------------------------------------------------EGVKELGG 507 (844)
T ss_dssp ------------------------------------------------------------------------TTSGGGTS
T ss_pred ------------------------------------------------------------------------chhhhcCC
Confidence 57999999
Q ss_pred eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhHHHHHHHHH
Q 002898 560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQ 639 (869)
Q Consensus 560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 639 (869)
||||+|++|+|+|+|+|++|||||||+||+|+||+|+||++|+.|| ++++..+|.+++++++++|+++++++++++||
T Consensus 508 l~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~--~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq 585 (844)
T 1tf5_A 508 LAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFG--AERTMAMLDRFGMDDSTPIQSKMVSRAVESSQ 585 (844)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSH--HHHHHHHHHHHTCCSSSCBCCHHHHHHHHHHH
T ss_pred cEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHh--HHHHHHHHHhcCCCCccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Q 002898 640 ISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKE 719 (869)
Q Consensus 640 ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~wdl~~L~~~ 719 (869)
+++|++||++||++|+||||||.||++||++|+.||++ +++++.|.+|++++++.+++.++++...+++||+++|...
T Consensus 586 ~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~ 663 (844)
T 1tf5_A 586 KRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS--ENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDL 663 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHHHHTSCSSCCTTCSSCCCHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhcCCcCCcccccHHHHHHH
Confidence 99999999999999999999999999999999999965 5899999999999999999998877677789999999887
Q ss_pred HHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccccccccccc
Q 002898 720 FIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRA 799 (869)
Q Consensus 720 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 799 (869)
+...++. .. .+ +++.| ...
T Consensus 664 ~~~~~~~--~~---~~-------------------------------------------~~~~~-------------~~~ 682 (844)
T 1tf5_A 664 INTTYLD--EG---AL-------------------------------------------EKSDI-------------FGK 682 (844)
T ss_dssp HHTTTSC--TT---SC-------------------------------------------SSSSC-------------SSC
T ss_pred HHHhcCc--cC---CC-------------------------------------------CHHHH-------------hcC
Confidence 7542210 00 00 00011 013
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898 800 TTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ 868 (869)
Q Consensus 800 ~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~ 868 (869)
+.++++++|.+.+.+.|..+ +...+++.+++|||.++|++||.+|++||++||+||+|||||+|||+
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r~~~l~~~D~~W~~hl~~m~~lr~~i~lr~~~q~ 749 (844)
T 1tf5_A 683 EPDEMLELIMDRIITKYNEK--EEQFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQT 749 (844)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSCSSS
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 55788999999999999876 34567889999999999999999999999999999999999999997
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=7.3e-28 Score=271.65 Aligned_cols=277 Identities=18% Similarity=0.241 Sum_probs=192.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--------CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--------GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--------G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
.|+|+|..+++.+++|+ |+.+.||+|||++|++|++-..+. |..|.|++|+++||.+.++++..+....+
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 157 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESY 157 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCC
Confidence 59999999999999988 999999999999999999754443 55899999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeec
Q 002898 72 LSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLIS 149 (869)
Q Consensus 72 Lsv~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiS 149 (869)
+++++++++.+...+ ...-+++|+++|++.| .|++... ....+ .+.++||||||.|+ |.+
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~------~~~l~---~~~~lVlDEah~~~-~~g------- 219 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRL-LDFVDRT------FITFE---DTRFVVLDEADRML-DMG------- 219 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHH-HHHHHTT------SCCCT---TCCEEEEETHHHHT-STT-------
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHH-HHHHHhC------Ccccc---cCCeEEEccHhhhh-ccC-------
Confidence 999999999875433 3345789999999986 4444322 12234 89999999999986 543
Q ss_pred CCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcc
Q 002898 150 GEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQ 229 (869)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~d 229 (869)
+.+.+..++..+.. ...+++. +|+++.+ ..+... +..++. +
T Consensus 220 --------f~~~~~~i~~~~~~-------~~~~q~l-----------------~~SAT~~--~~~~~~--~~~~l~---~ 260 (434)
T 2db3_A 220 --------FSEDMRRIMTHVTM-------RPEHQTL-----------------MFSATFP--EEIQRM--AGEFLK---N 260 (434)
T ss_dssp --------THHHHHHHHHCTTS-------CSSCEEE-----------------EEESCCC--HHHHHH--HHTTCS---S
T ss_pred --------cHHHHHHHHHhcCC-------CCCceEE-----------------EEeccCC--HHHHHH--HHHhcc---C
Confidence 23355555554321 1133443 4555432 223221 122221 2
Q ss_pred eEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHh
Q 002898 230 YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 309 (869)
Q Consensus 230 YiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY 309 (869)
|+. +.+... + .+...+
T Consensus 261 ~~~-----i~~~~~-~----------------------------~~~~~i------------------------------ 276 (434)
T 2db3_A 261 YVF-----VAIGIV-G----------------------------GACSDV------------------------------ 276 (434)
T ss_dssp CEE-----EEESST-T----------------------------CCCTTE------------------------------
T ss_pred CEE-----EEeccc-c----------------------------cccccc------------------------------
Confidence 211 001000 0 000000
Q ss_pred CCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 310 QMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 310 ~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
....+......|...+++.+.+ .+.++||||+|++.++.+++.|.+.|+++..+|+++.+
T Consensus 277 -----------------~~~~~~~~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~ 336 (434)
T 2db3_A 277 -----------------KQTIYEVNKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQ 336 (434)
T ss_dssp -----------------EEEEEECCGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCH
T ss_pred -----------------ceEEEEeCcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCH
Confidence 0012234566788877766654 23459999999999999999999999999999998777
Q ss_pred hhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+|+..+-. +.| ...|.|||++|+||+||.
T Consensus 337 ~~R~~~l~~F~~g-~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 337 SQREQALRDFKNG-SMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHHHTS-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHHcC-CCcEEEEchhhhCCCCcc
Confidence 777765554 556 567999999999999994
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.95 E-value=2.4e-26 Score=253.96 Aligned_cols=273 Identities=16% Similarity=0.211 Sum_probs=185.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+|+|..+...+++|+ |+.+.||.|||+++.+|++ ..+ .+..+.|++|+..||.+-++.+..+...+++.++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHH-HHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEE
Confidence 48999999999998887 9999999999999999996 444 4678999999999999999999999999999999
Q ss_pred EEcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 76 LIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 76 ~i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
...++.+... +...+.++|+++|++.+ ++.++.. ....+ .+.++||||||.++ +.+
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l-~~~l~~~------~~~~~---~~~~vViDEah~~~-~~~----------- 195 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRV-FDMIRRR------SLRTR---AIKMLVLDEADEML-NKG----------- 195 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHT-STT-----------
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHH-HHHHHhC------CccHh---heeEEEEccHHHHH-hhh-----------
Confidence 9999877543 34457789999999886 4555432 12233 78999999999985 321
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+...+..+...+.. ..
T Consensus 196 ----~~~~~~~i~~~~~~---------~~--------------------------------------------------- 211 (410)
T 2j0s_A 196 ----FKEQIYDVYRYLPP---------AT--------------------------------------------------- 211 (410)
T ss_dssp ----THHHHHHHHTTSCT---------TC---------------------------------------------------
T ss_pred ----hHHHHHHHHHhCcc---------Cc---------------------------------------------------
Confidence 11222222222211 11
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
++.+||+|...+..++...|-.+.
T Consensus 212 --------------------------------------------------------~~i~~SAT~~~~~~~~~~~~~~~~ 235 (410)
T 2j0s_A 212 --------------------------------------------------------QVVLISATLPHEILEMTNKFMTDP 235 (410)
T ss_dssp --------------------------------------------------------EEEEEESCCCHHHHTTGGGTCSSC
T ss_pred --------------------------------------------------------eEEEEEcCCCHHHHHHHHHHcCCC
Confidence 133444444333233222222221
Q ss_pred EEeCCCCCccccc--CCCeEEe-ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcch
Q 002898 314 IEVPTNLPNIRVD--LPIQSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (869)
Q Consensus 314 v~IPt~~p~~R~d--~~d~i~~-t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~ 390 (869)
+.+.......... ....+.. ....|...+.+.+.. ..+.++||||+|++.++.+++.|.+.|+++..+|+++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 313 (410)
T 2j0s_A 236 IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK 313 (410)
T ss_dssp EEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHH--HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred EEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHh--cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHH
Confidence 1111110000000 0011122 233466666655544 2356899999999999999999999999999999986666
Q ss_pred hhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 391 ~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+|+..+-. +.| ...|.|||++++||+||.
T Consensus 314 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 314 ERESIMKEFRSG-ASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHHT-SSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHHCC-CCCEEEECChhhCcCCcc
Confidence 66544433 556 457999999999999994
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=1.5e-25 Score=246.33 Aligned_cols=273 Identities=17% Similarity=0.173 Sum_probs=184.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+|.|..+...+++|+ ++.+.||.|||+++.+|++ ..+ .+..+.|++|+..||.+-++++..++..+|++++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL-EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHH-HHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 48999999999998877 9999999999999999997 444 3568999999999999999999999999999999
Q ss_pred EEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 76 LIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 76 ~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
...++...... ...-.++|+++|++.| .+++.... ...+ .+.++||||||.++-..
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~------~~~~---~~~~vIiDEaH~~~~~~------------ 179 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRV-LDLASRKV------ADLS---DCSLFIMDEADKMLSRD------------ 179 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTTC------SCCT---TCCEEEEESHHHHSSHH------------
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHH-HHHHHhCC------cccc---cCCEEEEeCchHhhhhc------------
Confidence 99998775443 2345679999999876 33332211 1233 78999999999874110
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+...+..+...+.. .
T Consensus 180 ----~~~~~~~i~~~~~~---------~---------------------------------------------------- 194 (400)
T 1s2m_A 180 ----FKTIIEQILSFLPP---------T---------------------------------------------------- 194 (400)
T ss_dssp ----HHHHHHHHHTTSCS---------S----------------------------------------------------
T ss_pred ----hHHHHHHHHHhCCc---------C----------------------------------------------------
Confidence 11111111111110 0
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHH-HHHhCCC
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEF-LKMFQMP 312 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef-~~iY~l~ 312 (869)
.++.+||+|......++ ...++.+
T Consensus 195 -------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~ 219 (400)
T 1s2m_A 195 -------------------------------------------------------HQSLLFSATFPLTVKEFMVKHLHKP 219 (400)
T ss_dssp -------------------------------------------------------CEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred -------------------------------------------------------ceEEEEEecCCHHHHHHHHHHcCCC
Confidence 12345555554433332 2233332
Q ss_pred eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhh
Q 002898 313 VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (869)
Q Consensus 313 vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~ 392 (869)
+..................+.....|...+...+.. ..+.++||||++++.++.+++.|.+.|+.+..+|+++...++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 297 (400)
T 1s2m_A 220 YEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 297 (400)
T ss_dssp EEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHH
T ss_pred eEEEeccccccCCceeEEEEechhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHH
Confidence 221111000000001112344556777766555543 356799999999999999999999999999999998655555
Q ss_pred HHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 393 Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+..+-. +.| ...|.|||+++++|+||.
T Consensus 298 ~~~~~~f~~g-~~~vLv~T~~~~~Gidip 325 (400)
T 1s2m_A 298 NKVFHEFRQG-KVRTLVCSDLLTRGIDIQ 325 (400)
T ss_dssp HHHHHHHHTT-SSSEEEESSCSSSSCCCT
T ss_pred HHHHHHHhcC-CCcEEEEcCccccCCCcc
Confidence 543333 455 567999999999999994
No 9
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=4.4e-26 Score=251.57 Aligned_cols=279 Identities=17% Similarity=0.152 Sum_probs=185.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---------------------CCcEEEEecCHHHHHH
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---------------------GEGVHVVTVNDYLAQR 58 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---------------------G~~V~VvT~ndyLA~R 58 (869)
.|+|+|..++..+.+|+ |+.+.||+|||+++.+|++...+. +..|.|++|+..||.+
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 58999999999999887 999999999999999999744332 2469999999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 59 DAEWMERVHRFLGLSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 59 Dae~~~~ly~~LGLsv~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
-++.+..+...+|++++.+.++.+..... ..-.++|+++|++.| .+++.. . ..... .+.++||||||.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~--~~~~~---~~~~iViDEah~ 186 (417)
T 2i4i_A 117 IYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL-VDMMER----G--KIGLD---FCKYLVLDEADR 186 (417)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH-HHHHHT----T--SBCCT---TCCEEEESSHHH
T ss_pred HHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH-HHHHHc----C--CcChh---hCcEEEEEChhH
Confidence 99999999999999999999988754433 334689999999886 333322 1 12234 789999999999
Q ss_pred hhhhcCCCceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHH
Q 002898 137 VLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN 216 (869)
Q Consensus 137 iLiDea~tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~ 216 (869)
++ +.++ .+.+..+...+... .....
T Consensus 187 ~~-~~~~---------------~~~~~~i~~~~~~~-----~~~~~---------------------------------- 211 (417)
T 2i4i_A 187 ML-DMGF---------------EPQIRRIVEQDTMP-----PKGVR---------------------------------- 211 (417)
T ss_dssp HH-HTTC---------------HHHHHHHHTSSSCC-----CBTTB----------------------------------
T ss_pred hh-ccCc---------------HHHHHHHHHhccCC-----CcCCc----------------------------------
Confidence 76 3321 12222222111000 00011
Q ss_pred HHHHHHHhccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCC
Q 002898 217 ALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTG 296 (869)
Q Consensus 217 Al~A~~l~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTG 296 (869)
++.+||+
T Consensus 212 -------------------------------------------------------------------------~~i~~SA 218 (417)
T 2i4i_A 212 -------------------------------------------------------------------------HTMMFSA 218 (417)
T ss_dssp -------------------------------------------------------------------------EEEEEES
T ss_pred -------------------------------------------------------------------------EEEEEEE
Confidence 2334444
Q ss_pred CcccHHHHHHHHh-CCCe-EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHH
Q 002898 297 TAKTEEKEFLKMF-QMPV-IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK 374 (869)
Q Consensus 297 Ta~te~~Ef~~iY-~l~v-v~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~ 374 (869)
|......++...| +-.+ +.+.........-....++.....|...+.+.+.. +..+.++||||+|++.++.+++.|.
T Consensus 219 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~ 297 (417)
T 2i4i_A 219 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDFLY 297 (417)
T ss_dssp CCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHT-CCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4443333332222 1111 11111000000001123345566777766655543 4567899999999999999999999
Q ss_pred HCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 375 QQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 375 ~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+.|+++..+|+++...+++..+-. +.| ...|.|||++++||+||.
T Consensus 298 ~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip 343 (417)
T 2i4i_A 298 HEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVAARGLDIS 343 (417)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHHT-SSCEEEECHHHHTTSCCC
T ss_pred HCCCCeeEecCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcc
Confidence 999999999998666566544433 456 557999999999999994
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=2.1e-25 Score=243.68 Aligned_cols=274 Identities=19% Similarity=0.155 Sum_probs=188.1
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv 74 (869)
.|+|.|..+...+++|+ ++.+.||.|||+++.+|+. ..+. +..|.|++|+..|+.+-++++..+...+ ++++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 108 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 108 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH-HHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH-HhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 48999999999998877 9999999999999999997 4443 5589999999999999999999998887 8999
Q ss_pred EEEcCCCCHHHHHhc---cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCC
Q 002898 75 GLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151 (869)
Q Consensus 75 ~~i~~~~~~~~rk~a---Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~ 151 (869)
+++.++.+....... ..++|+++|++.+ .++++. . ....+ .+.++||||||.++-+.
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~----~--~~~~~---~~~~vViDEaH~~~~~~---------- 168 (391)
T 1xti_A 109 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARN----K--SLNLK---HIKHFILDECDKMLEQL---------- 168 (391)
T ss_dssp EEECTTSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHT----T--SSCCT---TCSEEEECSHHHHTSSH----------
T ss_pred EEEeCCCCHHHHHHHHhcCCCCEEEECHHHH-HHHHHc----C--Ccccc---ccCEEEEeCHHHHhhcc----------
Confidence 999998875544332 3479999999876 223321 1 12234 89999999999985110
Q ss_pred CCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceE
Q 002898 152 ASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYI 231 (869)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYi 231 (869)
.+...+..+...+..
T Consensus 169 -----~~~~~~~~~~~~~~~------------------------------------------------------------ 183 (391)
T 1xti_A 169 -----DMRRDVQEIFRMTPH------------------------------------------------------------ 183 (391)
T ss_dssp -----HHHHHHHHHHHTSCS------------------------------------------------------------
T ss_pred -----chHHHHHHHHhhCCC------------------------------------------------------------
Confidence 001111111111100
Q ss_pred EECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHH-HHhC
Q 002898 232 VRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFL-KMFQ 310 (869)
Q Consensus 232 V~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~-~iY~ 310 (869)
-.++.+||+|......++. ..++
T Consensus 184 --------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~ 207 (391)
T 1xti_A 184 --------------------------------------------------------EKQVMMFSATLSKEIRPVCRKFMQ 207 (391)
T ss_dssp --------------------------------------------------------SSEEEEEESSCCSTHHHHHHHHCS
T ss_pred --------------------------------------------------------CceEEEEEeeCCHHHHHHHHHHcC
Confidence 0134567777766544443 3333
Q ss_pred CCe-EEeCCCCCccccc-CCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCc
Q 002898 311 MPV-IEVPTNLPNIRVD-LPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPK 388 (869)
Q Consensus 311 l~v-v~IPt~~p~~R~d-~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~ 388 (869)
-.+ +.++...+..... ....+......|...+.+.+.. ..+.++||||+|++.++.+++.|.+.|+++..+|+++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 285 (391)
T 1xti_A 208 DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV--LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP 285 (391)
T ss_dssp SCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHH--SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHh--cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 332 2233221111111 1122334566777777766654 36789999999999999999999999999999999865
Q ss_pred chhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 389 YAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 389 ~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
..+++..+-. +.| ...|.|||+++++|+||.
T Consensus 286 ~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 286 QEERLSRYQQFKDF-QRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHHHHHHTT-CCSEEEESCCCSSCBCCT
T ss_pred HHHHHHHHHHHhcC-CCcEEEECChhhcCCCcc
Confidence 5555544433 455 557999999999999994
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=3.1e-25 Score=239.12 Aligned_cols=271 Identities=17% Similarity=0.171 Sum_probs=186.8
Q ss_pred CCchhhHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH--cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL--TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~lpa~l~AL--~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.|+|.|..+...+++|+ ++.+.||+|||+++.+|+.-... .|..|.|++|+..|+.+-++++..++...+++++.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 107 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 58999999999888773 88999999999999999873322 26789999999999999999999999999999999
Q ss_pred EcCCCCHHHH-HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCC
Q 002898 77 IQRGMIPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD 155 (869)
Q Consensus 77 i~~~~~~~~r-k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~ 155 (869)
+.++.+.... .....++|+++|++.| ++.+. .. ....+ .++++||||||.++ +..
T Consensus 108 ~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~----~~--~~~~~---~~~~iIiDEah~~~-~~~------------- 163 (367)
T 1hv8_A 108 IYGGKAIYPQIKALKNANIVVGTPGRI-LDHIN----RG--TLNLK---NVKYFILDEADEML-NMG------------- 163 (367)
T ss_dssp ECTTSCHHHHHHHHHTCSEEEECHHHH-HHHHH----TT--CSCTT---SCCEEEEETHHHHH-TTT-------------
T ss_pred EECCcchHHHHhhcCCCCEEEecHHHH-HHHHH----cC--Ccccc---cCCEEEEeCchHhh-hhc-------------
Confidence 9988774432 3334789999999875 23332 11 12234 78999999999975 211
Q ss_pred cccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEECC
Q 002898 156 VARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNG 235 (869)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 235 (869)
++..+..+...+.. .
T Consensus 164 --~~~~~~~~~~~~~~---------~------------------------------------------------------ 178 (367)
T 1hv8_A 164 --FIKDVEKILNACNK---------D------------------------------------------------------ 178 (367)
T ss_dssp --THHHHHHHHHTSCS---------S------------------------------------------------------
T ss_pred --hHHHHHHHHHhCCC---------C------------------------------------------------------
Confidence 11112222111110 0
Q ss_pred eEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEE
Q 002898 236 KALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIE 315 (869)
Q Consensus 236 ~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~ 315 (869)
.++.+||||...+..++...|--+...
T Consensus 179 -----------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~ 205 (367)
T 1hv8_A 179 -----------------------------------------------------KRILLFSATMPREILNLAKKYMGDYSF 205 (367)
T ss_dssp -----------------------------------------------------CEEEEECSSCCHHHHHHHHHHCCSEEE
T ss_pred -----------------------------------------------------ceEEEEeeccCHHHHHHHHHHcCCCeE
Confidence 124456666655443433333223222
Q ss_pred eCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHH
Q 002898 316 VPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAE 395 (869)
Q Consensus 316 IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~ 395 (869)
++...+.. -....+..+..+|..++.+.+. ..+.++||||+|++.++.+++.|++.|+.+..+|+++...+++..
T Consensus 206 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 280 (367)
T 1hv8_A 206 IKAKINAN--IEQSYVEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKV 280 (367)
T ss_dssp EECCSSSS--SEEEEEECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHH
T ss_pred EEecCCCC--ceEEEEEeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 22211110 0011233456678887776664 567899999999999999999999999999999998655555543
Q ss_pred HHH-HcCCCccEEEEcCCCcCCccee
Q 002898 396 TVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 396 Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+-. +.| ...|.|||+++++|+||.
T Consensus 281 ~~~f~~~-~~~vlv~T~~~~~Gid~~ 305 (367)
T 1hv8_A 281 IRLFKQK-KIRILIATDVMSRGIDVN 305 (367)
T ss_dssp HHHHHTT-SSSEEEECTTHHHHCCCS
T ss_pred HHHHHcC-CCeEEEECChhhcCCCcc
Confidence 333 455 567999999999999994
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=7.4e-25 Score=253.30 Aligned_cols=284 Identities=15% Similarity=0.171 Sum_probs=184.6
Q ss_pred CCchhhHHHHHHHh--CCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------cEEEEecCHHHHHHHHHHHHHHhhh-
Q 002898 2 RHFDVQIIGGAVLH--DGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVVTVNDYLAQRDAEWMERVHRF- 69 (869)
Q Consensus 2 rp~dvQl~g~~~L~--~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-------~V~VvT~ndyLA~RDae~~~~ly~~- 69 (869)
.|+|+|..++..++ +|+ |+.+.||+|||++|++|++-..+.++ .|.|++|+..||.+-++.+..++..
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~ 173 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 173 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 58999999999887 455 99999999999999999985555544 7999999999999999999998653
Q ss_pred ---cCCeEEEEcCCCCHHHHH---hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC
Q 002898 70 ---LGLSVGLIQRGMIPEERR---SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 70 ---LGLsv~~i~~~~~~~~rk---~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (869)
-++.+..+.++.+..... ....+||+++|++.| +++|... .....+ .+.++||||||.|+ |.++
T Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-----~~~~~~---~~~~lViDEah~l~-~~~f 243 (563)
T 3i5x_A 174 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFR---FVDYKVLDEADRLL-EIGF 243 (563)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCT---TCCEEEEETHHHHT-STTT
T ss_pred cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHH-HHHHHhc-----cccccc---cceEEEEeCHHHHh-ccch
Confidence 356788888887643322 245789999999986 4555432 112345 79999999999986 4322
Q ss_pred CceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Q 002898 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (869)
Q Consensus 144 tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l 223 (869)
. +.+..+...+...... ....
T Consensus 244 ~---------------~~~~~i~~~l~~~~~~--~~~~------------------------------------------ 264 (563)
T 3i5x_A 244 R---------------DDLETISGILNEKNSK--SADN------------------------------------------ 264 (563)
T ss_dssp H---------------HHHHHHHHHHHHHCSS--CTTC------------------------------------------
T ss_pred H---------------HHHHHHHHhhhhcccc--CccC------------------------------------------
Confidence 2 2222222222110000 0000
Q ss_pred hccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHH
Q 002898 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (869)
Q Consensus 224 ~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~ 303 (869)
.++.+||+|+...-.
T Consensus 265 -----------------------------------------------------------------~~~l~~SAT~~~~v~ 279 (563)
T 3i5x_A 265 -----------------------------------------------------------------IKTLLFSATLDDKVQ 279 (563)
T ss_dssp -----------------------------------------------------------------CEEEEEESSCCTHHH
T ss_pred -----------------------------------------------------------------ceEEEEEccCCHHHH
Confidence 124566666655444
Q ss_pred HHHHHh-CCC-eEEe---CCCCCcccccCCCeE--EeChhHHHHHHHHHHHHH---HhcCCcEEEEecchhhHHHHHHHH
Q 002898 304 EFLKMF-QMP-VIEV---PTNLPNIRVDLPIQS--FATARGKWEYARQEVESM---FRLGRPVLVGSTSVENSEYLSDLL 373 (869)
Q Consensus 304 Ef~~iY-~l~-vv~I---Pt~~p~~R~d~~d~i--~~t~~~K~~aii~ei~~~---~~~grPVLV~t~Si~~SE~ls~~L 373 (869)
++...+ +.. .+.+ +...+.........+ ......+....+..+... ...+.++||||+|...++.++..|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L 359 (563)
T 3i5x_A 280 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 359 (563)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 443322 222 1222 111221111111111 122234444444444433 246789999999999999999999
Q ss_pred HHC---CCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 374 KQQ---GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 374 ~~~---gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
++. |+++..+|+++.+.+|+..+-. +.| ...|.|||++++||+||.
T Consensus 360 ~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~GiDip 409 (563)
T 3i5x_A 360 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFP 409 (563)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCT
T ss_pred HHhccCCceEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEcchhhcCCCcc
Confidence 887 9999999998766666654444 556 567999999999999994
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=242.95 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=178.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+++|..+...+.+|+ |+.+.||.|||+++.+|++ ..+ .+..+.|++|+..||.+-++++..+...+|+.++
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL-QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEE
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHH-HHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEE
Confidence 58999999999998887 9999999999999999997 444 4678999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHhc---cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 76 LIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 76 ~i~~~~~~~~rk~a---Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
...++.+....... -.++|+++|++.| ++.+.... ...+ .+.++||||||.++ +.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~~------~~~~---~~~~vViDEah~~~-~~~---------- 199 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRV-FDMLNRRY------LSPK---YIKMFVLDEADEML-SRG---------- 199 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHH-HHHHHHTS------SCST---TCCEEEECSHHHHH-HTT----------
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHH-HHHHHcCC------cccc---cCcEEEEECHHHhh-ccC----------
Confidence 99988775443322 4579999999886 44443311 1223 78999999999975 321
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
+...+..+...+.. .
T Consensus 200 -----~~~~~~~~~~~~~~---------~--------------------------------------------------- 214 (414)
T 3eiq_A 200 -----FKDQIYDIFQKLNS---------N--------------------------------------------------- 214 (414)
T ss_dssp -----THHHHHHHHTTSCT---------T---------------------------------------------------
T ss_pred -----cHHHHHHHHHhCCC---------C---------------------------------------------------
Confidence 11111111111110 0
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (869)
.++.|||+|......++.+.|-.+
T Consensus 215 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 238 (414)
T 3eiq_A 215 --------------------------------------------------------TQVVLLSATMPSDVLEVTKKFMRD 238 (414)
T ss_dssp --------------------------------------------------------CEEEEECSCCCHHHHHHHTTTCSS
T ss_pred --------------------------------------------------------CeEEEEEEecCHHHHHHHHHHcCC
Confidence 134566777665544444433323
Q ss_pred eEEeCC-CCCcccccCCC-eEEe-ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 313 VIEVPT-NLPNIRVDLPI-QSFA-TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 313 vv~IPt-~~p~~R~d~~d-~i~~-t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
...+.. ........... .+.. ....|...+.+.+.. ..+.++||||++++.++.+++.|.+.|+.+..+|+++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~ 316 (414)
T 3eiq_A 239 PIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET--LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQ 316 (414)
T ss_dssp CEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS--SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHH
T ss_pred CEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh--CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCH
Confidence 222211 11111111111 1112 223355555544433 245689999999999999999999999999999997655
Q ss_pred hhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+++..+-. +.| ...|.|||+++++|+||.
T Consensus 317 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 317 KERDVIMREFRSG-SSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHHHSCC----CEEECSSCC--CCGG
T ss_pred HHHHHHHHHHHcC-CCcEEEECCccccCCCcc
Confidence 555543333 344 457999999999999994
No 14
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.94 E-value=9.7e-25 Score=237.58 Aligned_cols=272 Identities=17% Similarity=0.224 Sum_probs=184.3
Q ss_pred CCchhhHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|+|+|..+...+++| + |+.+.||.|||+++.+|++ ..+ .+..|.|++|+..|+.+-++++..+..+.++.
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML-TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH-HHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCee
Confidence 5899999999999876 4 9999999999999999997 444 46789999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+....++... +.....++|+++|++.| ++.++.. ....+ .++++||||||.++-+..
T Consensus 106 ~~~~~~~~~~--~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~---~~~~iIiDEah~~~~~~~----------- 162 (395)
T 3pey_A 106 SQLIVPDSFE--KNKQINAQVIVGTPGTV-LDLMRRK------LMQLQ---KIKIFVLDEADNMLDQQG----------- 162 (395)
T ss_dssp EEEESTTSSC--TTSCBCCSEEEECHHHH-HHHHHTT------CBCCT---TCCEEEEETHHHHHHSTT-----------
T ss_pred EEEEecCchh--hhccCCCCEEEEcHHHH-HHHHHcC------Ccccc---cCCEEEEEChhhhcCccc-----------
Confidence 9998876432 22345789999999886 3333221 12234 799999999999863221
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+......+...+.
T Consensus 163 ----~~~~~~~~~~~~~--------------------------------------------------------------- 175 (395)
T 3pey_A 163 ----LGDQCIRVKRFLP--------------------------------------------------------------- 175 (395)
T ss_dssp ----HHHHHHHHHHTSC---------------------------------------------------------------
T ss_pred ----cHHHHHHHHHhCC---------------------------------------------------------------
Confidence 0011111111110
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
.-.++.+||+|......++.+.+..+.
T Consensus 176 -----------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 202 (395)
T 3pey_A 176 -----------------------------------------------------KDTQLVLFSATFADAVRQYAKKIVPNA 202 (395)
T ss_dssp -----------------------------------------------------TTCEEEEEESCCCHHHHHHHHHHSCSC
T ss_pred -----------------------------------------------------CCcEEEEEEecCCHHHHHHHHHhCCCC
Confidence 001356777777665555544333332
Q ss_pred EEeCCCCCcccccCCCeEE---eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcch
Q 002898 314 IEVPTNLPNIRVDLPIQSF---ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (869)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~---~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~ 390 (869)
..+...............+ .....|...+...+. . ..+.++||||++++.++.+++.|+..|+++..+|+++...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 280 (395)
T 3pey_A 203 NTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG-L-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQ 280 (395)
T ss_dssp EEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHT-T-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred eEEEccccccccccccEEEEEcCchHHHHHHHHHHHH-h-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHH
Confidence 2222211111111111111 234455554443332 2 3567999999999999999999999999999999986665
Q ss_pred hhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 391 ~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+++..+-. +.| ...|.|||+++++|+||.
T Consensus 281 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 281 ERDRLIDDFREG-RSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHHHHTT-SCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHHCC-CCCEEEECChhhcCCCcc
Confidence 66544444 455 567999999999999994
No 15
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=2.3e-24 Score=251.47 Aligned_cols=284 Identities=15% Similarity=0.179 Sum_probs=183.3
Q ss_pred CCchhhHHHHHHHh--CCC--eEEecCCCcHHHHHHHHHHHHHHcCC-------cEEEEecCHHHHHHHHHHHHHHhh--
Q 002898 2 RHFDVQIIGGAVLH--DGS--IAEMKTGEGKTLVSTLAAYLNALTGE-------GVHVVTVNDYLAQRDAEWMERVHR-- 68 (869)
Q Consensus 2 rp~dvQl~g~~~L~--~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-------~V~VvT~ndyLA~RDae~~~~ly~-- 68 (869)
.|+|+|..++..++ +|+ |+++.||+|||++|++|++-..+.++ .|.||+|+..||.+.++.+..++.
T Consensus 43 ~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~ 122 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 122 (579)
T ss_dssp SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhc
Confidence 48999999998888 555 99999999999999999985555543 799999999999999999999874
Q ss_pred --hcCCeEEEEcCCCCHHHHH---hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCC
Q 002898 69 --FLGLSVGLIQRGMIPEERR---SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGR 143 (869)
Q Consensus 69 --~LGLsv~~i~~~~~~~~rk---~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~ 143 (869)
.-++.+..+.++.+..... ....++|+++|++.| .+.|... .....+ .+.++||||||.|+ |.++
T Consensus 123 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~---~~~~lViDEah~l~-~~gf 192 (579)
T 3sqw_A 123 YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL-IDVLEKY-----SNKFFR---FVDYKVLDEADRLL-EIGF 192 (579)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH-HHHHHHH-----HHHHCT---TCCEEEEETHHHHT-STTT
T ss_pred ccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH-HHHHHhc-----cccccc---cCCEEEEEChHHhh-cCCC
Confidence 3467788888887644322 234789999999886 4544321 123345 79999999999986 4322
Q ss_pred CceeecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Q 002898 144 NPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEF 223 (869)
Q Consensus 144 tPLiiSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l 223 (869)
. +.+..+...+...... .+..
T Consensus 193 ~---------------~~~~~i~~~l~~~~~~--~~~~------------------------------------------ 213 (579)
T 3sqw_A 193 R---------------DDLETISGILNEKNSK--SADN------------------------------------------ 213 (579)
T ss_dssp H---------------HHHHHHHHHHHHHCSS--CTTC------------------------------------------
T ss_pred H---------------HHHHHHHHHhhhhhcc--cccC------------------------------------------
Confidence 1 2222222222110000 0000
Q ss_pred hccCcceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHH
Q 002898 224 YRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEK 303 (869)
Q Consensus 224 ~~~d~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~ 303 (869)
.++.+||+|+...-.
T Consensus 214 -----------------------------------------------------------------~~~l~~SAT~~~~v~ 228 (579)
T 3sqw_A 214 -----------------------------------------------------------------IKTLLFSATLDDKVQ 228 (579)
T ss_dssp -----------------------------------------------------------------CEEEEEESSCCTHHH
T ss_pred -----------------------------------------------------------------ceEEEEeccCChHHH
Confidence 124456666655444
Q ss_pred HHHHH-hCCCe-EEeC---CCCCcccccCCC-eEEe-ChhHHHHHHHHHHHHHH---hcCCcEEEEecchhhHHHHHHHH
Q 002898 304 EFLKM-FQMPV-IEVP---TNLPNIRVDLPI-QSFA-TARGKWEYARQEVESMF---RLGRPVLVGSTSVENSEYLSDLL 373 (869)
Q Consensus 304 Ef~~i-Y~l~v-v~IP---t~~p~~R~d~~d-~i~~-t~~~K~~aii~ei~~~~---~~grPVLV~t~Si~~SE~ls~~L 373 (869)
++... .+... +.+. ...+........ .+.. ....+....+..+.... ..+.++||||+|+..++.++..|
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L 308 (579)
T 3sqw_A 229 KLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 308 (579)
T ss_dssp HHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHH
Confidence 43322 22221 2221 111111111111 1112 22333434444443322 45779999999999999999999
Q ss_pred HHC---CCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 374 KQQ---GIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 374 ~~~---gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+. |+++..+|+++.+.+++..+-. +.| ...|+|||++++||+||.
T Consensus 309 ~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g-~~~vLVaT~~~~~GiDip 358 (579)
T 3sqw_A 309 KNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILVCTDVGARGMDFP 358 (579)
T ss_dssp HHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEEECGGGTSSCCCT
T ss_pred HHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC-CCeEEEEcchhhcCCCcc
Confidence 887 9999999998766666654444 556 567999999999999994
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.93 E-value=1.9e-24 Score=240.36 Aligned_cols=124 Identities=21% Similarity=0.202 Sum_probs=101.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|+|..+...+++|+ |+.+.||+|||+++++|+....-.|..|.|++|+..||.+-++.+..+.. +|++++.+.+
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g 99 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYS 99 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEEC
Confidence 58999999999999987 99999999999988888764444788999999999999999999999888 9999999999
Q ss_pred CCCHHHHH-----hccC-CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMIPEERR-----SNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~~~~rk-----~aY~-~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+..++. .... ++|+++|++.+. +++. . .... .+.++||||||.++
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~-~~l~----~----~~~~---~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 100 SMKKEEKEKFEKSFEEDDYHILVFSTQFVS-KNRE----K----LSQK---RFDFVFVDDVDAVL 152 (414)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEEEHHHHH-HCHH----H----HTTC---CCSEEEESCHHHHH
T ss_pred CCChhhHHHHHHHhhcCCCCEEEECHHHHH-HHHH----H----hccc---cccEEEEeChHhhh
Confidence 99874442 2223 899999998762 3332 1 2233 79999999999875
No 17
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=1.7e-24 Score=231.06 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=102.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|+.- .|..+.|++|+..|+.+-++++..+...+|++++.+.+
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG 92 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC
Confidence 58999999999998877 99999999999999999863 38899999999999999999999999999999999999
Q ss_pred CCCHHHH-HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMIPEER-RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~~~~r-k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+.... .....++|+++|++.| .+++.. . ....+ .++++||||||.++
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~iViDEah~~~ 142 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRL-LDLWSK----G--VIDLS---SFEIVIIDEADLMF 142 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHH-HHHHHT----T--SCCGG---GCSEEEEESHHHHH
T ss_pred CcchHHHHhhcCCCCEEEECHHHH-HHHHHc----C--Ccchh---hCcEEEEEChHHhh
Confidence 8875543 3344689999999875 222221 1 11234 78999999999985
No 18
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=2.9e-24 Score=252.52 Aligned_cols=272 Identities=18% Similarity=0.187 Sum_probs=185.6
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|+|..++..+++|+ ++.|.||.|||++|.+|++. .+..+.||+|+..|+.+..+.+..+ |++++.+.+
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~ 116 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNA 116 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeC
Confidence 47899999999999987 99999999999999999973 4568999999999999988887764 999999999
Q ss_pred CCCHHHHHhc--------cCCCeEEECCCchhh-hHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecC
Q 002898 80 GMIPEERRSN--------YRCDITYTNNSELGF-DYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (869)
Q Consensus 80 ~~~~~~rk~a--------Y~~DI~YgT~~e~~f-DyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg 150 (869)
+++..++... -.++|+|+|+..|.- ..+.+.+.. ..... .+.++||||||.++ +.+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~---~~~~~---~i~~iViDEAH~is-~~g-------- 181 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK---AYEAR---RFTRIAVDEVHCCS-QWG-------- 181 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---HHHTT---CEEEEEEETGGGGS-TTC--------
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh---hhhcc---CCcEEEEECccccc-ccc--------
Confidence 9887766532 357999999987632 123333321 12234 79999999999985 221
Q ss_pred CCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcce
Q 002898 151 EASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQY 230 (869)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dY 230 (869)
.+|..+ |. .+. .+ ...+.
T Consensus 182 ----------------------~dfr~~-------------------------~~-------~l~-~l--~~~~~----- 199 (591)
T 2v1x_A 182 ----------------------HDFRPD-------------------------YK-------ALG-IL--KRQFP----- 199 (591)
T ss_dssp ----------------------TTCCGG-------------------------GG-------GGG-HH--HHHCT-----
T ss_pred ----------------------cccHHH-------------------------HH-------HHH-HH--HHhCC-----
Confidence 011000 00 000 00 00000
Q ss_pred EEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHH-HHHHHHh
Q 002898 231 IVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE-KEFLKMF 309 (869)
Q Consensus 231 iV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~-~Ef~~iY 309 (869)
+ ..+.+||+|+.... ..+.+..
T Consensus 200 -----------------------------------~----------------------~~ii~lSAT~~~~v~~~i~~~l 222 (591)
T 2v1x_A 200 -----------------------------------N----------------------ASLIGLTATATNHVLTDAQKIL 222 (591)
T ss_dssp -----------------------------------T----------------------SEEEEEESSCCHHHHHHHHHHT
T ss_pred -----------------------------------C----------------------CcEEEEecCCCHHHHHHHHHHh
Confidence 0 12557888887643 4455555
Q ss_pred CCCe-E-Ee-CCCCCcccccCCCeEEe---ChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEe
Q 002898 310 QMPV-I-EV-PTNLPNIRVDLPIQSFA---TARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVL 383 (869)
Q Consensus 310 ~l~v-v-~I-Pt~~p~~R~d~~d~i~~---t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vL 383 (869)
++.. . .. +.++|..+. .+.. ...++...+++.+... ..+.++||||.|.+.++.++..|...|+.+..+
T Consensus 223 ~~~~~~~~~~~~~r~nl~~----~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~ 297 (591)
T 2v1x_A 223 CIEKCFTFTASFNRPNLYY----EVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAY 297 (591)
T ss_dssp TCCSCEEEECCCCCTTEEE----EEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCcEEEecCCCCcccEE----EEEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5542 2 22 223333321 1111 2344555666555433 267899999999999999999999999999999
Q ss_pred ecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 384 NARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 384 na~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
||++...+|+..+-. ..| ...|.|||+++|+|+|+.
T Consensus 298 h~~l~~~~R~~~~~~F~~g-~~~VlVAT~a~~~GID~p 334 (591)
T 2v1x_A 298 HANLEPEDKTTVHRKWSAN-EIQVVVATVAFGMGIDKP 334 (591)
T ss_dssp CTTSCHHHHHHHHHHHHTT-SSSEEEECTTSCTTCCCS
T ss_pred cCCCCHHHHHHHHHHHHcC-CCeEEEEechhhcCCCcc
Confidence 998766666654444 455 568999999999999994
No 19
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=6.6e-24 Score=245.80 Aligned_cols=266 Identities=18% Similarity=0.200 Sum_probs=185.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|.|.-++..+++|+ ++.|.||.|||++|.+|+++ .+..+.||+|+..|+.+..+.+.. +|+.++++.+
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~----~gi~~~~l~~ 97 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQA----NGVAAACLNS 97 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHH----TTCCEEEECT
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHHHHHHHH----cCCcEEEEeC
Confidence 47899999999999888 99999999999999999973 345689999999999988887765 5999999999
Q ss_pred CCCHHHHHhc------cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 80 GMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 80 ~~~~~~rk~a------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+.+..++... -..+|+|+|+..+..+...+.+. .. .+.++||||||.+. +.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~-------~~---~~~~vViDEaH~i~-~~g~---------- 156 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA-------HW---NPVLLAVDEAHCIS-QWGH---------- 156 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT-------TS---CEEEEEESSGGGGC-TTSS----------
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh-------hC---CCCEEEEeCccccC-cCCC----------
Confidence 8876654432 24799999998874322222221 23 78999999999974 2110
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+|.. . ...+.. + ...+.
T Consensus 157 --------------------~fr~-----------------------------~---~~~l~~-l--~~~~~-------- 173 (523)
T 1oyw_A 157 --------------------DFRP-----------------------------E---YAALGQ-L--RQRFP-------- 173 (523)
T ss_dssp --------------------CCCH-----------------------------H---HHGGGG-H--HHHCT--------
T ss_pred --------------------ccHH-----------------------------H---HHHHHH-H--HHhCC--------
Confidence 1100 0 000000 0 00000
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccH-HHHHHHHhCCC
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTE-EKEFLKMFQMP 312 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te-~~Ef~~iY~l~ 312 (869)
+ ..+.+||+|+... ..++.+..++.
T Consensus 174 --------------------------------~----------------------~~~i~lSAT~~~~~~~~i~~~l~~~ 199 (523)
T 1oyw_A 174 --------------------------------T----------------------LPFMALTATADDTTRQDIVRLLGLN 199 (523)
T ss_dssp --------------------------------T----------------------SCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred --------------------------------C----------------------CCEEEEeCCCCHHHHHHHHHHhCCC
Confidence 0 1356889999764 35666666654
Q ss_pred --eEEeCC-CCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 313 --VIEVPT-NLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 313 --vv~IPt-~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
++.+++ ++|..+ ........+...+++.+.. ..+.++||||+|.+.++.+++.|...|+++..+||++..
T Consensus 200 ~~~~~~~~~~r~~l~-----~~v~~~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~ 272 (523)
T 1oyw_A 200 DPLIQISSFDRPNIR-----YMLMEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLEN 272 (523)
T ss_dssp SCEEEECCCCCTTEE-----EEEEECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred CCeEEeCCCCCCceE-----EEEEeCCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCH
Confidence 344433 333332 1122335567777777765 368899999999999999999999999999999998766
Q ss_pred hhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+|+..+-. +.| ...|.|||+++|+|+|+.
T Consensus 273 ~~R~~~~~~f~~g-~~~vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 273 NVRADVQEKFQRD-DLQIVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHHHHHHTT-SCSEEEECTTSCTTTCCT
T ss_pred HHHHHHHHHHHcC-CCeEEEEechhhCCCCcc
Confidence 666654444 455 578999999999999994
No 20
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=1.1e-23 Score=231.20 Aligned_cols=274 Identities=16% Similarity=0.179 Sum_probs=181.3
Q ss_pred CCchhhHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHc-C---CcEEEEecCHHHHHHHHHHHHHHhhhc-CC
Q 002898 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALT-G---EGVHVVTVNDYLAQRDAEWMERVHRFL-GL 72 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~lpa~l~AL~-G---~~V~VvT~ndyLA~RDae~~~~ly~~L-GL 72 (869)
.|+|+|..+...+++| + |+.+.||.|||++|.+|++ ..+. + ..|.|++|+..||.+-++++..+...+ ++
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~-~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 125 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML-SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHH-HHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc
Confidence 5899999999999876 4 9999999999999999997 4443 2 379999999999999999999998876 78
Q ss_pred eEEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 73 SVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 73 sv~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
+++...++.+.. +.....++|+++|++.+ .+++ ... ...... .++++||||||.++-+...
T Consensus 126 ~~~~~~~~~~~~-~~~~~~~~ivv~T~~~l-~~~~----~~~-~~~~~~---~~~~iViDEah~~~~~~~~--------- 186 (412)
T 3fht_A 126 KLAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWC----SKL-KFIDPK---KIKVFVLDEADVMIATQGH--------- 186 (412)
T ss_dssp CEEEECTTCCCC-TTCCCCCSEEEECHHHH-HHHH----TTS-CSSCGG---GCCEEEEETHHHHHSTTTT---------
T ss_pred eEEEeecCcchh-hhhcCCCCEEEECchHH-HHHH----Hhc-CCcChh---hCcEEEEeCHHHHhhcCCc---------
Confidence 998888765422 22345679999999875 3333 211 112224 7999999999998632211
Q ss_pred CCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEE
Q 002898 153 SKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIV 232 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 232 (869)
......+...+.. .
T Consensus 187 ------~~~~~~~~~~~~~---------~--------------------------------------------------- 200 (412)
T 3fht_A 187 ------QDQSIRIQRMLPR---------N--------------------------------------------------- 200 (412)
T ss_dssp ------HHHHHHHHHTSCT---------T---------------------------------------------------
T ss_pred ------HHHHHHHHhhCCC---------C---------------------------------------------------
Confidence 1111111111110 0
Q ss_pred ECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCC
Q 002898 233 RNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMP 312 (869)
Q Consensus 233 ~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~ 312 (869)
.++.+||+|......++...+-.+
T Consensus 201 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 224 (412)
T 3fht_A 201 --------------------------------------------------------CQMLLFSATFEDSVWKFAQKVVPD 224 (412)
T ss_dssp --------------------------------------------------------CEEEEEESCCCHHHHHHHHHHSSS
T ss_pred --------------------------------------------------------ceEEEEEeecCHHHHHHHHHhcCC
Confidence 123455566554444443332222
Q ss_pred eEEeCCCCCc-cccc-CCCeE-EeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcc
Q 002898 313 VIEVPTNLPN-IRVD-LPIQS-FATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKY 389 (869)
Q Consensus 313 vv~IPt~~p~-~R~d-~~d~i-~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~ 389 (869)
...+...... .... ....+ ......|...+.+.+.. ..+.++||||+|+..++.++..|.+.|+.+..+|+++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 302 (412)
T 3fht_A 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMV 302 (412)
T ss_dssp CEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred CeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCH
Confidence 2211111100 0000 00111 12345677776666554 356799999999999999999999999999999998766
Q ss_pred hhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 390 AAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 390 ~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.+++..+-. +.| ...|.|||++++||+||.
T Consensus 303 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 303 EQRAAVIERFREG-KEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHTT-SCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHHCC-CCcEEEEcCccccCCCcc
Confidence 666544433 455 457999999999999994
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=2.5e-24 Score=235.09 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=102.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+|.|..+...+.+|+ ++.+.||.|||+++++|++ ..+ .+..|.|++|+..|+.+-++++..++..+|++++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~-~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 121 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 121 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEE
Confidence 58999999999988876 9999999999999999997 444 3568999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHh-ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERRS-NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk~-aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.+.++.+..+... .-.++|+++|++.| ++.+.. . ..... .+.++||||||.++
T Consensus 122 ~~~g~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~--~~~~~---~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 122 ACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQR----R--RFRTD---KIKMFILDEADEML 175 (394)
T ss_dssp EECSSCCHHHHHHHHHHCSEEEECHHHH-HHHHHT----T--SSCCT---TCCEEEEETHHHHH
T ss_pred EEeCCCchHHHHhhcCCCCEEEECHHHH-HHHHHh----C--Ccchh---hCcEEEEEChHHhh
Confidence 9999887554432 23689999999876 333322 1 12233 78999999999975
No 22
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=9.2e-23 Score=225.55 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=97.9
Q ss_pred CCchhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|.|..+...+.+|+ |+.+.||.|||+++.+++..... .+..|.||+|+..|+.+-++++..++...+.+++.+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g 88 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTG 88 (494)
T ss_dssp CCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECS
T ss_pred CccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeC
Confidence 58999999999888766 99999999999999999863322 57899999999999998777777665434449999999
Q ss_pred CCCHHHHHhcc-CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMIPEERRSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~~~~rk~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+...+...+ .++|+++|++.|.-+ +... ..... .++++||||||.+.
T Consensus 89 ~~~~~~~~~~~~~~~ivv~T~~~l~~~-----~~~~--~~~~~---~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 89 EKSPEERSKAWARAKVIVATPQTIEND-----LLAG--RISLE---DVSLIVFDEAHRAV 138 (494)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHH-----HHTT--SCCTT---SCSEEEEETGGGCS
T ss_pred CcchhhhhhhccCCCEEEecHHHHHHH-----HhcC--Ccchh---hceEEEEECCcccC
Confidence 98877655443 589999999876322 2111 12233 78999999999975
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=5.1e-22 Score=226.89 Aligned_cols=128 Identities=19% Similarity=0.148 Sum_probs=99.7
Q ss_pred CCCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
+.|+|+|..++..+++|+ |+.+.||.|||++|.+|+.-.... +..|.|++|+..|+.+-++.+..++..+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 469999999999998776 999999999999999999744443 7789999999999999999999999999999
Q ss_pred EEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhh-hccCCCCceEEEeechhhhh
Q 002898 74 VGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 74 v~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDsiL 138 (869)
++.+.++.+...+ .....+||+++|++.| .+.+. .. .. ... .++++||||||.+.
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~----~~--~~~~~~---~~~~vViDEah~~~ 143 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DG--TLTSLS---IFTLMIFDECHNTT 143 (556)
T ss_dssp EEECCCC-----CHHHHHHHCSEEEECHHHH-HHHHH----SS--SCCCST---TCSEEEEETGGGCS
T ss_pred EEEEeCCCCcchhHHHhhCCCCEEEECHHHH-HHHHH----hC--cccccc---cCCEEEEECCcccC
Confidence 9999998764432 2334689999999885 23332 21 11 233 78999999999985
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=8.2e-24 Score=240.12 Aligned_cols=277 Identities=17% Similarity=0.199 Sum_probs=110.2
Q ss_pred CCchhhHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHcCC---cEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 002898 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALTGE---GVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~lpa~l~AL~G~---~V~VvT~ndyLA~RDae~~~~ly~~L-GLs 73 (869)
+|+|+|..+...++.| + |+.+.||+|||++|++|++-....+. .|.|++|+..||.+-++.+..+..++ ++.
T Consensus 114 ~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 193 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (479)
T ss_dssp SCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCce
Confidence 6899999999999986 4 99999999999999999973333333 79999999999999999999998875 788
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+++..++.... +.....++|++||++.+ .+++. .. .....+ .+.++||||+|.++-+.+
T Consensus 194 ~~~~~~~~~~~-~~~~~~~~Ivv~Tp~~l-~~~l~----~~-~~~~~~---~~~~iViDEah~~~~~~~----------- 252 (479)
T 3fmp_B 194 LAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWCS----KL-KFIDPK---KIKVFVLDEADVMIATQG----------- 252 (479)
T ss_dssp EEEESTTCCCC-TTCCCCCSEEEECHHHH-HHHHT----TS-CCCCGG---GCCEEEECCHHHHHTSTT-----------
T ss_pred EEEEeCCcccc-ccccCCCCEEEECchHH-HHHHH----hc-CCcCcc---cCCEEEEECHHHHhhcCC-----------
Confidence 88877764422 23356789999999886 33332 11 112234 799999999999862221
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
.......+...+.. ..++. +++++.+ ..+... +..++. +..+
T Consensus 253 ----~~~~~~~i~~~~~~---------~~~~i-----------------~~SAT~~--~~~~~~--~~~~~~-~~~~--- 294 (479)
T 3fmp_B 253 ----HQDQSIRIQRMLPR---------NCQML-----------------LFSATFE--DSVWKF--AQKVVP-DPNV--- 294 (479)
T ss_dssp ----HHHHHHHHHTTSCT---------TSEEE-----------------EEESCCC--HHHHHH--HHHHSS-SEEE---
T ss_pred ----cHHHHHHHHhhCCc---------cceEE-----------------EEeCCCC--HHHHHH--HHHHcC-CCeE---
Confidence 11222233333321 22333 3444321 111111 112211 1111
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
++
T Consensus 295 ------i~------------------------------------------------------------------------ 296 (479)
T 3fmp_B 295 ------IK------------------------------------------------------------------------ 296 (479)
T ss_dssp ------EE------------------------------------------------------------------------
T ss_pred ------Ee------------------------------------------------------------------------
Confidence 11
Q ss_pred EEeCCCCCcccccCCCeEE-eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhh
Q 002898 314 IEVPTNLPNIRVDLPIQSF-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAR 392 (869)
Q Consensus 314 v~IPt~~p~~R~d~~d~i~-~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~ 392 (869)
++........-....++ .....|...+...+.. ..+.++||||+|...++.++..|...|+.+.++|+++...+|
T Consensus 297 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R 372 (479)
T 3fmp_B 297 --LKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQR 372 (479)
T ss_dssp --EC----------------------------------------------------------------------------
T ss_pred --ccccccCcCCceEEEEEeCCHHHHHHHHHHHHhh--ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHH
Confidence 00000000000000111 1223455555554443 245689999999999999999999999999999998666555
Q ss_pred HHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 393 EAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 393 Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+..+-. +.| ...|.|||++++||+||.
T Consensus 373 ~~~~~~f~~g-~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 373 AAVIERFREG-KEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHcC-CCcEEEEccccccCCccc
Confidence 543333 445 457999999999999994
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.89 E-value=1e-21 Score=223.72 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=103.6
Q ss_pred CCCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
+.|+|+|..++..+++|+ |+.+.||.|||+++.+|+.-.... +..|.|++|+..|+.+-++.+..++..+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 479999999999998777 999999999999999999744443 7789999999999999999999999999999
Q ss_pred EEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 74 VGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 74 v~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++.+.++.+...+ ...-.++|+++|++.| .+.+.. .. ..... .+.++||||||.++
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~----~~-~~~~~---~~~~vViDEah~~~ 140 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQIL-VNNLNN----GA-IPSLS---VFTLMIFDECHNTS 140 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHH-HHHHHT----SS-SCCGG---GCSEEEETTGGGCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHH-HHHHhc----Cc-ccccc---cCCEEEEECccccC
Confidence 9999998754332 2233589999999886 333322 11 00234 78999999999985
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.89 E-value=7.9e-23 Score=235.38 Aligned_cols=272 Identities=14% Similarity=0.186 Sum_probs=166.4
Q ss_pred CCchhhHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHH-c---CCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNAL-T---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~lpa~l~AL-~---G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|++.|..+...+.+| + |+.+.||+|||+++++|++ ..| . +..|.|++|+..|+.+-++++..++...++.
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il-~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML-SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHH-HHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHH-HHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 3789999999999887 4 9999999999999999997 444 3 3479999999999999999999999998888
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCC
Q 002898 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEAS 153 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~ 153 (869)
+....++.... .....++|+++|++.+ ++++... ....+ .++++||||+|.+.-+..
T Consensus 220 ~~~~~~~~~~~--~~~~~~~Ivv~T~~~l-~~~l~~~------~~~~~---~~~lIIiDEaH~~~~~~~----------- 276 (508)
T 3fho_A 220 TAFGIKDSVPK--GAKIDAQIVIGTPGTV-MDLMKRR------QLDAR---DIKVFVLDEADNMLDQQG----------- 276 (508)
T ss_dssp EEC------------CCCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEECCHHHHTTC-------------
T ss_pred EEEEeCCcccc--cccCCCCEEEECHHHH-HHHHHcC------Ccccc---CCCEEEEechhhhcccCC-----------
Confidence 87766554332 2233789999999886 4444321 11233 799999999999752110
Q ss_pred CCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEE
Q 002898 154 KDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR 233 (869)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 233 (869)
+......+...+..
T Consensus 277 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 290 (508)
T 3fho_A 277 ----LGDQSMRIKHLLPR-------------------------------------------------------------- 290 (508)
T ss_dssp ----CHHHHHHHHHHSCT--------------------------------------------------------------
T ss_pred ----cHHHHHHHHHhCCc--------------------------------------------------------------
Confidence 01111111111100
Q ss_pred CCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCe
Q 002898 234 NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPV 313 (869)
Q Consensus 234 d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~v 313 (869)
-.++.|||+|......++...|..+.
T Consensus 291 ------------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~~ 316 (508)
T 3fho_A 291 ------------------------------------------------------NTQIVLFSATFSERVEKYAERFAPNA 316 (508)
T ss_dssp ------------------------------------------------------TCEEEEEESCCSTHHHHHHHHHSTTC
T ss_pred ------------------------------------------------------CCeEEEEeCCCCHHHHHHHHHhcCCC
Confidence 01355777777665555555554443
Q ss_pred EEeCCCCCc-ccccCCCeE-E-eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcch
Q 002898 314 IEVPTNLPN-IRVDLPIQS-F-ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYA 390 (869)
Q Consensus 314 v~IPt~~p~-~R~d~~d~i-~-~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~ 390 (869)
..+...... ........+ . .....+...+...+.. ..+.++||||+++..++.++..|.+.|+.+..+|+++...
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~ 394 (508)
T 3fho_A 317 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL--LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGA 394 (508)
T ss_dssp EEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----C
T ss_pred eEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Confidence 333221111 111111111 1 2344555555544433 3567999999999999999999999999999999975554
Q ss_pred hhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 391 AREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 391 ~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+++..+-. +.| ...|.|||+|+++|+||.
T Consensus 395 ~R~~il~~f~~g-~~~VLVaT~~l~~GiDip 424 (508)
T 3fho_A 395 QRDAIMDSFRVG-TSKVLVTTNVIARGIDVS 424 (508)
T ss_dssp TTGGGTHHHHSS-SCCCCEECC-----CCCT
T ss_pred HHHHHHHHHHCC-CCeEEEeCChhhcCCCcc
Confidence 55433333 556 457999999999999994
No 27
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=231.47 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=95.0
Q ss_pred CCCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC------CcEEEEecCHHHHHHH-HHHHHHHhhhcC
Q 002898 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG------EGVHVVTVNDYLAQRD-AEWMERVHRFLG 71 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G------~~V~VvT~ndyLA~RD-ae~~~~ly~~LG 71 (869)
+.|+|.|.-++..+++|+ |+.+.||.|||+++.+|+......+ ..|.||+|+..|+.+- .+++..++.. +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 468999999999998876 9999999999999999996433332 7899999999999999 8888887765 5
Q ss_pred CeEEEEcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccc----hhhhhccCCCCceEEEeechhhh
Q 002898 72 LSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAAN----SEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 72 Lsv~~i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~----~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
++++.+.++.+..+ +...-.+||+|+|++.| .+.+... ....... .+.++||||||.+
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L-----~~~l~~~~~~~~~~~~~~---~~~lvViDEaH~~ 148 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-----ENSLLNLENGEDAGVQLS---DFSLIIIDECHHT 148 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHH-----HHHTC--------CCCGG---GCSEEEEESGGGC
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHH-----HHHHhccccccccceecc---cCcEEEEECcccc
Confidence 99999998865432 23345789999999875 3333211 0112234 7899999999987
No 28
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=2.3e-21 Score=234.14 Aligned_cols=259 Identities=15% Similarity=0.228 Sum_probs=176.9
Q ss_pred CCchhhHHHHHHHhC--------CCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHD--------GSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~--------G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|++.|..++..+.+ ..|++..||+|||++|++|++.....|..|.|++|+..||.+-++.+..++..+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~ 447 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIH 447 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCce
Confidence 578999999887764 349999999999999999998555679999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhcc------CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCcee
Q 002898 74 VGLIQRGMIPEERRSNY------RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY------~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (869)
|++++++++..+++..+ .+||++||++.| .+. .... .+.++||||+|.+-.+. +.
T Consensus 448 v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll-----~~~-------~~~~---~l~lVVIDEaHr~g~~q-r~--- 508 (780)
T 1gm5_A 448 VALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI-----QED-------VHFK---NLGLVIIDEQHRFGVKQ-RE--- 508 (780)
T ss_dssp EEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH-----HHC-------CCCS---CCCEEEEESCCCC------C---
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hhh-------hhcc---CCceEEecccchhhHHH-HH---
Confidence 99999999887765433 489999999754 332 2234 88999999999852110 00
Q ss_pred ecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccC
Q 002898 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 148 iSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d 227 (869)
. +.. . ..
T Consensus 509 ------------------------------------~------------------l~~-~-----------------~~- 515 (780)
T 1gm5_A 509 ------------------------------------A------------------LMN-K-----------------GK- 515 (780)
T ss_dssp ------------------------------------C------------------CCS-S-----------------SS-
T ss_pred ------------------------------------H------------------HHH-h-----------------CC-
Confidence 0 000 0 00
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 307 (869)
-.++.+||+|.....-.+ .
T Consensus 516 ------------------------------------------------------------~~~vL~mSATp~p~tl~~-~ 534 (780)
T 1gm5_A 516 ------------------------------------------------------------MVDTLVMSATPIPRSMAL-A 534 (780)
T ss_dssp ------------------------------------------------------------CCCEEEEESSCCCHHHHH-H
T ss_pred ------------------------------------------------------------CCCEEEEeCCCCHHHHHH-H
Confidence 012445666654322111 1
Q ss_pred HhC-CCeEEe---CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhh--------HHHHHHHHHH
Q 002898 308 MFQ-MPVIEV---PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVEN--------SEYLSDLLKQ 375 (869)
Q Consensus 308 iY~-l~vv~I---Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~--------SE~ls~~L~~ 375 (869)
.|+ +++..| |+.+. |...+.....+...+.+.+.+....|+.++|||++++. ++.+++.|.+
T Consensus 535 ~~g~~~~s~i~~~p~~r~------~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~ 608 (780)
T 1gm5_A 535 FYGDLDVTVIDEMPPGRK------EVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSK 608 (780)
T ss_dssp HTCCSSCEEECCCCSSCC------CCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGG
T ss_pred HhCCcceeeeeccCCCCc------ceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHh
Confidence 232 333333 22221 11112222233455666777666789999999998765 4667788877
Q ss_pred ---CCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 376 ---QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 376 ---~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
.|+.+..+|+++...++++.+-+ +.| ...|.|||++++||+||.
T Consensus 609 ~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 609 EVFPEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp SCC---CBCCCCSSSCCSCSHHHHHHHTTT-SSSBCCCSSCCCSCSCCT
T ss_pred hhcCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEECCCCCccccCC
Confidence 47888999998777777765555 445 568999999999999994
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=2e-20 Score=226.46 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=100.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.|+|.|..++..+++|+ |+.+.||.|||+++.+|+.-.... +..|.||+|+..|+.+-.+.+..++..+|+++
T Consensus 248 ~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (797)
T 4a2q_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (797)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceE
Confidence 58999999999998876 999999999999999999744444 77899999999999999999999999999999
Q ss_pred EEEcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccchhhh-hccCCCCceEEEeechhhhh
Q 002898 75 GLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 75 ~~i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+.++.+... +...-.+||+++|++.| .+.++ .. .. ... .++++||||||.+.
T Consensus 328 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~----~~--~~~~~~---~~~~iViDEaH~~~ 384 (797)
T 4a2q_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DG--TLTSLS---IFTLMIFDECHNTT 384 (797)
T ss_dssp EEECCC-----CHHHHHHTCSEEEECHHHH-HHHHH----SS--SCCCGG---GCSEEEETTGGGCS
T ss_pred EEEeCCcchhhhHHHhhCCCCEEEEchHHH-HHHHH----hc--cccccc---cCCEEEEECccccC
Confidence 99999876443 23345789999999886 33332 11 11 234 78999999999975
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=3.3e-20 Score=232.64 Aligned_cols=261 Identities=16% Similarity=0.123 Sum_probs=179.1
Q ss_pred CCchhhHHHHHHHhC----CC----eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe
Q 002898 2 RHFDVQIIGGAVLHD----GS----IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~----G~----IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs 73 (869)
.|+|.|..++..+.+ |+ |+++.||.|||++|++|++.....|++|.|++|+..||.|-++.+...+..++++
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~ 682 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 682 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCe
Confidence 478999999987765 54 9999999999999999998777789999999999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHhc------cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCcee
Q 002898 74 VGLIQRGMIPEERRSN------YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLL 147 (869)
Q Consensus 74 v~~i~~~~~~~~rk~a------Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLi 147 (869)
++++.+..+..+++.. -.+||++||+.- |... .... .+.++||||+|.+-.
T Consensus 683 v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~l-----l~~~-------~~~~---~l~lvIiDEaH~~g~-------- 739 (1151)
T 2eyq_A 683 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL-----LQSD-------VKFK---DLGLLIVDEEHRFGV-------- 739 (1151)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH-----HHSC-------CCCS---SEEEEEEESGGGSCH--------
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH-----HhCC-------cccc---ccceEEEechHhcCh--------
Confidence 9999988776655432 258999999843 3321 2234 899999999999410
Q ss_pred ecCCCCCCcccHHHHHHHHHHcccCCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccC
Q 002898 148 ISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRD 227 (869)
Q Consensus 148 iSg~~~~~~~~~~~~~~~~~~l~~~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d 227 (869)
.....+..+.. +
T Consensus 740 -------------~~~~~l~~l~~-------------------------------------------------------~ 751 (1151)
T 2eyq_A 740 -------------RHKERIKAMRA-------------------------------------------------------N 751 (1151)
T ss_dssp -------------HHHHHHHHHHT-------------------------------------------------------T
T ss_pred -------------HHHHHHHHhcC-------------------------------------------------------C
Confidence 00111111110 0
Q ss_pred cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK 307 (869)
Q Consensus 228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~ 307 (869)
.++.+||+|.....-.+ .
T Consensus 752 -------------------------------------------------------------~~vl~lSATp~p~~l~~-~ 769 (1151)
T 2eyq_A 752 -------------------------------------------------------------VDILTLTATPIPRTLNM-A 769 (1151)
T ss_dssp -------------------------------------------------------------SEEEEEESSCCCHHHHH-H
T ss_pred -------------------------------------------------------------CCEEEEcCCCChhhHHH-H
Confidence 01345555553322111 1
Q ss_pred HhCCC-eEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC--CCCeEEee
Q 002898 308 MFQMP-VIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ--GIPHNVLN 384 (869)
Q Consensus 308 iY~l~-vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~--gi~~~vLn 384 (869)
.+++. ...|.+ .|..|......+..... ..+.+.+.+....|.+|+|||++++.++.+++.|++. ++.+.++|
T Consensus 770 ~~~~~~~~~i~~-~~~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lh 845 (1151)
T 2eyq_A 770 MSGMRDLSIIAT-PPARRLAVKTFVREYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 845 (1151)
T ss_dssp HTTTSEEEECCC-CCCBCBCEEEEEEECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECC
T ss_pred HhcCCCceEEec-CCCCccccEEEEecCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 12222 222221 12222222222222211 2334444455567899999999999999999999987 88999999
Q ss_pred cCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 385 ARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 385 a~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
+++...+++..+-. +.| ...|.|||+++++|+||.
T Consensus 846 g~~~~~eR~~il~~F~~g-~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 846 GQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp SSCCHHHHHHHHHHHHTT-SCCEEEESSTTGGGSCCT
T ss_pred CCCCHHHHHHHHHHHHcC-CCcEEEECCcceeeeccc
Confidence 98777777755554 445 568999999999999995
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=1e-20 Score=225.55 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=99.3
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|+|..+...+++|+ |+.+.||+|||+++.+|++-....|..+.+++|+..||.+-++.+. -+..+|++|+..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~-~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK-KWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT-TTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH-HHHhcCCEEEEEeC
Confidence 57899999999988877 9999999999999999997544568899999999999999999985 44556999999999
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+....++.. -.++|+|+|++.+ ...++. . ....+ .+.++||||||.+.
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l-~~~l~~----~--~~~l~---~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKA-DSLIRN----R--ASWIK---AVSCLVVDEIHLLD 151 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHH-HHHHHT----T--CSGGG---GCCEEEETTGGGGG
T ss_pred CCCcchhhc-cCCCEEEECHHHH-HHHHHc----C--hhHHh---hcCEEEEeeeeecC
Confidence 876544322 2689999999885 222322 1 12244 78999999999874
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.85 E-value=5.5e-20 Score=219.48 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=98.3
Q ss_pred CCchhhHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
.|+|+|..+... +++|+ |+.+.||+|||+++.+|++-..+ .|..+.+++|+..||.+-++.+. -+..+|++|+..
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~-~~~~~g~~v~~~ 108 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK-DWELIGFKVAMT 108 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG-GGGGGTCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH-HhhcCCCEEEEE
Confidence 578999999988 66666 99999999999999999974334 58899999999999999999885 455679999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 78 ~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+|+....++.. -.++|+|+|++.+ ...++. . ...++ .+.++||||||.+.
T Consensus 109 ~G~~~~~~~~~-~~~~Iiv~Tpe~l-~~~~~~----~--~~~l~---~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 109 SGDYDTDDAWL-KNYDIIITTYEKL-DSLWRH----R--PEWLN---EVNYFVLDELHYLN 158 (715)
T ss_dssp CSCSSSCCGGG-GGCSEEEECHHHH-HHHHHH----C--CGGGG---GEEEEEECSGGGGG
T ss_pred eCCCCCchhhc-CCCCEEEEcHHHH-HHHHhC----C--hhHhh---ccCEEEEechhhcC
Confidence 99876544433 2789999999875 222322 1 12245 89999999999964
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.85 E-value=2.4e-20 Score=220.80 Aligned_cols=127 Identities=18% Similarity=0.108 Sum_probs=100.4
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcC-----CcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTG-----EGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G-----~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.|+|.|..++..+++|+ |+.+.||.|||++|.+|+.-....+ ..+.|++|+..|+.+-.+.+..++..+|+++
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 92 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRV 92 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCE
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceE
Confidence 68999999999998776 9999999999999999997333332 5799999999999999999999998899999
Q ss_pred EEEcCCCCHH--HHHhccCCCeEEECCCchhhhHHHHhhccchhhh-hccCCCCceEEEeechhhhh
Q 002898 75 GLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQL-VMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 75 ~~i~~~~~~~--~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~-v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+.|+.+.. .+...-.++|+|+|++.| .+.| ... .. ... .+.++||||||.+.
T Consensus 93 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L-~~~l----~~~--~~~~l~---~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 93 TGISGATAENVPVEQIVENNDIIILTPQIL-VNNL----KKG--TIPSLS---IFTLMIFDECHNTS 149 (696)
T ss_dssp EEECSSSCSSSCHHHHHHTCSEEEECHHHH-HHHH----HTT--SSCCGG---GCSEEEEETGGGCS
T ss_pred EEEeCCccccccHHHhccCCCEEEECHHHH-HHHH----hcC--cccccc---cccEEEEeCCCccc
Confidence 9999986532 222334689999999886 2223 221 11 234 78999999999975
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.84 E-value=6e-20 Score=226.18 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=99.3
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-----GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-----G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.|+|.|..++..+++|+ |+.+.||.|||+++++|+.-.... |..|.||+|+..|+.+-++.+..++..+|+++
T Consensus 248 ~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (936)
T 4a2w_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (936)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceE
Confidence 68999999999998887 999999999999999999633233 67899999999999999999999999999999
Q ss_pred EEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 75 GLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 75 ~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+.++.+...+ ...-.+||+++|++.| .+.+. ... ..... .++++||||||.+.
T Consensus 328 ~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L-~~~l~----~~~-~~~l~---~~~liViDEaH~~~ 384 (936)
T 4a2w_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQIL-VNSFE----DGT-LTSLS---IFTLMIFDECHNTT 384 (936)
T ss_dssp EEECCC-----CCHHHHHHCSEEEECHHHH-HHHHH----SSS-CCCGG---GCSEEEEETGGGCS
T ss_pred EEEECCcchhhHHHHhccCCCEEEecHHHH-HHHHH----cCc-ccccc---CCCEEEEECccccC
Confidence 999998764432 2233589999999886 23332 110 01234 78999999999975
No 35
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.84 E-value=8.6e-21 Score=216.76 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=97.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~-~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
.|+|.|..++..+.+|+ ++.+.||.|||+++++|+......|+ .|.|++|+..|+.+-.+.+..+..+.+++++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 58899999999877654 99999999999999998874433566 8999999999999999999888777788999998
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++.+..++ ..-.++|+++|++.+ +++ .....+ .+.++||||+|.+.
T Consensus 193 ~~~~~~~~-~~~~~~I~i~T~~~l----~~~------~~~~~~---~~~liIiDE~H~~~ 238 (510)
T 2oca_A 193 GGASKDDK-YKNDAPVVVGTWQTV----VKQ------PKEWFS---QFGMMMNDECHLAT 238 (510)
T ss_dssp GGCCTTGG-GCTTCSEEEEEHHHH----TTS------CGGGGG---GEEEEEEETGGGCC
T ss_pred cCCccccc-cccCCcEEEEeHHHH----hhc------hhhhhh---cCCEEEEECCcCCC
Confidence 88765433 345689999999754 111 112334 79999999999974
No 36
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.84 E-value=4.9e-20 Score=220.37 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=98.0
Q ss_pred CCchhhHHHHHH-HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 2 RHFDVQIIGGAV-LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 2 rp~dvQl~g~~~-L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
.|+++|..+... +++|+ |+.+.||+|||+++.+|++-..+ .|..|.+++|+..||.+-++.+..+ ..+|++|+..
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l-~~~g~~v~~~ 101 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDW-EKIGLRVAMA 101 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGG-GGGTCCEEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHH-HhcCCEEEEe
Confidence 588999999987 77777 99999999999999999974434 5889999999999999999998644 4469999999
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 78 ~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+|+.+...+. .-.++|+|+|++.+ ...++. . ....+ .+.++||||||.+.
T Consensus 102 ~G~~~~~~~~-~~~~~Iiv~Tpe~l-~~~~~~----~--~~~l~---~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 102 TGDYDSKDEW-LGKYDIIIATAEKF-DSLLRH----G--SSWIK---DVKILVADEIHLIG 151 (720)
T ss_dssp CSCSSCCCGG-GGGCSEEEECHHHH-HHHHHH----T--CTTGG---GEEEEEEETGGGGG
T ss_pred cCCCCccccc-cCCCCEEEECHHHH-HHHHHc----C--hhhhh---cCCEEEEECCcccC
Confidence 9987654432 23689999999875 122222 1 12244 78999999999874
No 37
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3e-19 Score=223.10 Aligned_cols=118 Identities=21% Similarity=0.168 Sum_probs=96.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|+|..++..+++|+ |+.+.||+|||++|.+|++.....|..|.|++|+..||.+-+..+..+|. .|+++.+
T Consensus 184 ~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltG 259 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTG 259 (1108)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeC
Confidence 57899999999999988 99999999999999999986556788999999999999998888887765 7888888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.+. .-.++|+++|++.| ++.+.... ..++ .+.++||||||.|+
T Consensus 260 d~~~-----~~~~~IlV~Tpe~L-----~~~L~~~~--~~l~---~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 260 DITI-----NPDAGCLVMTTEIL-----RSMLYRGS--EVMR---EVAWVIFDEVHYMR 303 (1108)
T ss_dssp SCBC-----CCSCSEEEEEHHHH-----HHHHHHCS--SHHH---HEEEEEEETGGGTT
T ss_pred cccc-----CCCCCEEEeChHHH-----HHHHHcCc--cccc---cCCEEEEhhhhhcc
Confidence 8652 23589999999874 44433321 2345 79999999999985
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.83 E-value=3.7e-19 Score=220.32 Aligned_cols=125 Identities=21% Similarity=0.192 Sum_probs=97.4
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|.|.-++..+.+|+ ++.+.||.|||+++.+|+....-.|..|.|++|+..||.+-++.+..+|. |++++.+.+
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G 116 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITG 116 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeC
Confidence 47889999999999988 99999999999999999875555678899999999999998888887654 899999998
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCC
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~t 144 (869)
+.+. .-.++|+|+|++.| ++.+... ....+ .+.++||||||.++ |..+.
T Consensus 117 ~~~~-----~~~~~IlV~Tpe~L-----~~~l~~~--~~~l~---~l~lvViDEaH~l~-d~~~g 165 (997)
T 4a4z_A 117 DVQI-----NPDANCLIMTTEIL-----RSMLYRG--ADLIR---DVEFVIFDEVHYVN-DQDRG 165 (997)
T ss_dssp SCEE-----CTTSSEEEEEHHHH-----HHHHHHT--CSGGG---GEEEEEECCTTCCC-TTCTT
T ss_pred CCcc-----CCCCCEEEECHHHH-----HHHHHhC--chhhc---CCCEEEEECccccc-ccchH
Confidence 8642 23479999999875 3322221 12344 89999999999764 55443
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.83 E-value=6.4e-20 Score=228.39 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=100.3
Q ss_pred CchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCC----eEE
Q 002898 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL----SVG 75 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGL----sv~ 75 (869)
| ++|..++..+++|+ |+.+.||+|||+ +++|+....+ .|..+.|++|+..||.+.++.+..++..+|+ +++
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~ 135 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 135 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEE
Confidence 7 99999999999987 999999999998 8888876554 4678999999999999999999999999999 999
Q ss_pred EEcCCCCHHHHH----hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERR----SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk----~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+++|+.+...+. ..-.+||+++|++.| .+.+.. ++ .+.++||||||.|+
T Consensus 136 ~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L-----~~~l~~------L~---~l~~lViDEah~~l 188 (1054)
T 1gku_B 136 YYHGRIPKREKENFMQNLRNFKIVITTTQFL-----SKHYRE------LG---HFDFIFVDDVDAIL 188 (1054)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHHH-----HHCSTT------SC---CCSEEEESCHHHHH
T ss_pred EEeCCCChhhHHHHHhhccCCCEEEEcHHHH-----HHHHHH------hc---cCCEEEEeChhhhh
Confidence 999998765431 112289999999875 343321 44 79999999999987
No 40
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.82 E-value=4.4e-19 Score=221.50 Aligned_cols=124 Identities=21% Similarity=0.181 Sum_probs=100.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|+|..++..+++|+ |+.+.||+|||+++.+|+......|..|.|++|+..||.+-++.+..|. ..|++|+++.+
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~G 156 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYS 156 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeC
Confidence 68999999999999987 9999999999997767665444467899999999999999999999966 88999999999
Q ss_pred CCCHHHH-----Hhcc-CCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 80 GMIPEER-----RSNY-RCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 80 ~~~~~~r-----k~aY-~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+++..++ +..- .+||++||++.+ .+++. . ...+ .+.++||||||.++
T Consensus 157 g~~~~er~~~~~~l~~g~~~IlV~Tp~rL-~~~l~----~----l~~~---~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 157 SMKKEEKEKFEKSFEEDDYHILVFSTQFV-SKNRE----K----LSQK---RFDFVFVDDVDAVL 209 (1104)
T ss_dssp TCCTTHHHHHHHHHHTSCCSEEEEEHHHH-HHSHH----H----HHTS---CCSEEEESCHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEECHHHH-HHHHH----h----hccc---CcCEEEEeCCCccc
Confidence 9875333 2222 389999999886 33332 1 2234 89999999998765
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.81 E-value=2.4e-21 Score=219.25 Aligned_cols=110 Identities=22% Similarity=0.108 Sum_probs=87.5
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe-EEEEc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS-VGLIQ 78 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs-v~~i~ 78 (869)
.|+|.|.-+...+.+++ |+.+.||.|||+++++|+.. + |+.|.|++|+..|+.+-++.+.. ||++ ++.+.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~--~-~~~~Lvl~P~~~L~~Q~~~~~~~----~~~~~v~~~~ 165 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE--L-STPTLIVVPTLALAEQWKERLGI----FGEEYVGEFS 165 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHH--H-CSCEEEEESSHHHHHHHHHHGGG----GCGGGEEEBS
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHH--c-CCCEEEEECCHHHHHHHHHHHHh----CCCcceEEEC
Confidence 58999999999888765 99999999999999998863 2 88999999999999986666555 5999 99888
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++.+. .++|+++|.+.+ ...+. .... .+.++||||+|.+.
T Consensus 166 g~~~~-------~~~Ivv~T~~~l-----~~~~~-----~~~~---~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 166 GRIKE-------LKPLTVSTYDSA-----YVNAE-----KLGN---RFMLLIFDEVHHLP 205 (472)
T ss_dssp SSCBC-------CCSEEEEEHHHH-----HHTHH-----HHTT---TCSEEEEETGGGTT
T ss_pred CCcCC-------cCCEEEEEcHHH-----HHHHH-----HhcC---CCCEEEEECCcCCC
Confidence 87642 479999998654 22211 1223 68999999999975
No 42
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-18 Score=214.53 Aligned_cols=120 Identities=20% Similarity=0.168 Sum_probs=95.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
.|+|.|..++..+.+|+ |+.+.||.|||++|.+|++...-.|..|.+++|+..||.+-+..+..+|. +|+.++|
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltG 161 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTG 161 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeC
Confidence 58899999999998887 99999999999999988874444688999999999999999888887765 7888888
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhc
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (869)
+.+.. -.++|+++|++.| ++.+... ....+ .+.++||||||.|. |.
T Consensus 162 d~~~~-----~~~~IvV~Tpe~L-----~~~L~~~--~~~l~---~l~lVViDEaH~l~-d~ 207 (1010)
T 2xgj_A 162 DITIN-----PDAGCLVMTTEIL-----RSMLYRG--SEVMR---EVAWVIFDEVHYMR-DK 207 (1010)
T ss_dssp SCEEC-----TTCSEEEEEHHHH-----HHHHHHT--CTTGG---GEEEEEEETGGGGG-CT
T ss_pred CCccC-----CCCCEEEEcHHHH-----HHHHHcC--cchhh---cCCEEEEechhhhc-cc
Confidence 76432 2579999999764 3333221 23345 89999999999985 54
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.80 E-value=1e-19 Score=206.77 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=82.2
Q ss_pred CCchhhHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEE
Q 002898 2 RHFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLI 77 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i 77 (869)
.|.|+|- .++.+++|+ |+.+.||+|||+++++|++..++ .|..|.|++|+..||.+-++.++ |++++..
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 76 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR------GLPIRYQ 76 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc------Cceeeee
Confidence 4778886 467777665 88999999999999999975555 46789999999999999888764 7777654
Q ss_pred cCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 78 QRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 78 ~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
...... ...-...|.++|++.+ .+.+... ..+. .+.++||||||.+
T Consensus 77 ~~~~~~---~~~~~~~i~~~t~~~l-----~~~l~~~---~~l~---~~~~iViDEah~~ 122 (451)
T 2jlq_A 77 TPAVKS---DHTGREIVDLMCHATF-----TTRLLSS---TRVP---NYNLIVMDEAHFT 122 (451)
T ss_dssp CTTCSC---CCCSSCCEEEEEHHHH-----HHHHHHC---SCCC---CCSEEEEETTTCC
T ss_pred eccccc---cCCCCceEEEEChHHH-----HHHhhCc---cccc---CCCEEEEeCCccC
Confidence 433211 1223357888998764 2222211 2244 8999999999975
No 44
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.76 E-value=1.6e-18 Score=197.40 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=69.0
Q ss_pred HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhc
Q 002898 13 VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSN 89 (869)
Q Consensus 13 ~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~a 89 (869)
++.+|+ |+.+.||+|||++|.+|++-.++ .|..|.|++|+..||.+.++.+. |+++....+..... ..
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~---~t 87 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE---HQ 87 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-----------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC---CC
Confidence 355666 88999999999999999975555 67889999999999999888775 77776544332110 11
Q ss_pred cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 90 YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 90 Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
-..-|.+.|.+.+ ++ .+... ..++ .+.++||||||.+
T Consensus 88 ~~~~i~~~~~~~l----~~-~l~~~---~~l~---~~~~iViDEaH~~ 124 (459)
T 2z83_A 88 GNEIVDVMCHATL----TH-RLMSP---NRVP---NYNLFVMDEAHFT 124 (459)
T ss_dssp CCCSEEEEEHHHH----HH-HHHSC---C-CC---CCSEEEESSTTCC
T ss_pred CCcEEEEEchHHH----HH-Hhhcc---cccc---CCcEEEEECCccC
Confidence 1223555555432 11 12111 2244 8999999999973
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.75 E-value=2.3e-18 Score=203.48 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=75.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
.|.|+|-.+..++++|+ |+.+.||+|||++|++|++...+ .|..|.|++|++.||.+-++.++ |+.++...
T Consensus 171 ~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------~~~v~~~~ 244 (618)
T 2whx_A 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------GLPIRYQT 244 (618)
T ss_dssp CCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEECC
T ss_pred cCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------CCceeEec
Confidence 46777766666778888 99999999999999999975544 46689999999999998887665 66666322
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
.... ....-...|.+.|.+. |...+... ..+. .+.++||||||.+
T Consensus 245 ~~l~---~~~tp~~~i~~~t~~~-----l~~~l~~~---~~l~---~~~~iViDEah~~ 289 (618)
T 2whx_A 245 PAVK---SDHTGREIVDLMCHAT-----FTTRLLSS---TRVP---NYNLIVMDEAHFT 289 (618)
T ss_dssp TTSS---CCCCSSSCEEEEEHHH-----HHHHHHHC---SSCC---CCSEEEEESTTCC
T ss_pred ccce---eccCCCceEEEEChHH-----HHHHHhcc---cccc---CCeEEEEECCCCC
Confidence 2110 0000112233333332 11111111 1234 8999999999996
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.72 E-value=1.2e-17 Score=197.96 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=76.1
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR 91 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~ 91 (869)
+.+|+ |+.+.||+|||+++.+|++ . .|..|.|++|++.||.+-++.+. +.+|.+++...++.. ..-.
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~l~ll-~--~g~~vLVl~PTReLA~Qia~~l~---~~~g~~vg~~vG~~~-----~~~~ 297 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVPAAYA-A--QGYKVLVLNPSVAATLGFGAYMS---KAHGIDPNIRTGVRT-----ITTG 297 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHHHH-H--TTCCEEEEESCHHHHHHHHHHHH---HHHSCCCEEECSSCE-----ECCC
T ss_pred HHcCCeEEEEeCCchhHHHHHHHHHH-H--CCCeEEEEcchHHHHHHHHHHHH---HHhCCCeeEEECcEe-----ccCC
Confidence 44555 8899999999999988875 2 57799999999999999888554 556788888887653 3456
Q ss_pred CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 92 CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 92 ~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
++|+|+|++.| +.+. ....+ .+.++||||||.
T Consensus 298 ~~IlV~TPGrL----l~~~------~l~l~---~l~~lVlDEAH~ 329 (666)
T 3o8b_A 298 APVTYSTYGKF----LADG------GCSGG---AYDIIICDECHS 329 (666)
T ss_dssp CSEEEEEHHHH----HHTT------SCCTT---SCSEEEETTTTC
T ss_pred CCEEEECcHHH----HhCC------CcccC---cccEEEEccchh
Confidence 89999999985 3322 12234 799999999964
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.71 E-value=2.6e-16 Score=183.61 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCchhhHHHHHHHhC----C-C--eEEecCCCcHHHHHHHHHHHHHH---------cCCcEEEEecCHHHHHHHHHHHHH
Q 002898 2 RHFDVQIIGGAVLHD----G-S--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMER 65 (869)
Q Consensus 2 rp~dvQl~g~~~L~~----G-~--IaEm~TGEGKTLva~lpa~l~AL---------~G~~V~VvT~ndyLA~RDae~~~~ 65 (869)
.|+|.|..++-.+.+ | + ++.|.||.|||++++.++....- .++.|.|++|+..|+.|-. ..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~---~~ 254 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK---DK 254 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH---HH
Confidence 477899999887653 3 2 89999999999997665542222 4578999999999999765 23
Q ss_pred HhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 66 VHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 66 ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.|..+|..++.+.++. ..-.++|+++|++.|.- .+... ......... .++++||||||.+.
T Consensus 255 ~~~~~~~~~~~~~~~~------~~~~~~I~v~T~~~l~~-~~~~~--~~~~~~~~~---~~~lvIiDEaH~~~ 315 (590)
T 3h1t_A 255 TFTPFGDARHKIEGGK------VVKSREIYFAIYQSIAS-DERRP--GLYKEFPQD---FFDLIIIDECHRGS 315 (590)
T ss_dssp CCTTTCSSEEECCC--------CCSSCSEEEEEGGGC-------C--CGGGGSCTT---SCSEEEESCCC---
T ss_pred HHHhcchhhhhhhccC------CCCCCcEEEEEhhhhcc-ccccc--cccccCCCC---ccCEEEEECCcccc
Confidence 4556677777665432 23467999999998732 12110 000011122 78999999999975
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.71 E-value=2.5e-17 Score=186.83 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=51.2
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCcceec
Q 002898 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDIIL 421 (869)
Q Consensus 352 ~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIkL 421 (869)
.+.++||||+|++.++.+++.|++.|+++..+|+. +++..+-. +.| .-.|.|||++++||+||.+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g-~~~vLVaT~v~e~GiDipv 241 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQK-KPDFILATDIAEMGANLCV 241 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------C-CCSEEEESSSTTCCTTCCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCC-CceEEEECChhheeeccCc
Confidence 47899999999999999999999999999999993 23332322 445 5589999999999999973
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=2.4e-16 Score=203.94 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=98.6
Q ss_pred CchhhHHHHHHHhC-CC--eEEecCCCcHHHHHHHHHHHHHHc------------CCcEEEEecCHHHHHHHHHHHHHHh
Q 002898 3 HFDVQIIGGAVLHD-GS--IAEMKTGEGKTLVSTLAAYLNALT------------GEGVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 3 p~dvQl~g~~~L~~-G~--IaEm~TGEGKTLva~lpa~l~AL~------------G~~V~VvT~ndyLA~RDae~~~~ly 67 (869)
+.++|-.+....++ |. ++.+.||+|||++|.||++ ++|. |..|..|+|...||.+-+..++..|
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il-~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCML-REIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHH-HHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHH-HHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 45799999986553 44 9999999999999999985 7763 5679999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 68 RFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 68 ~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..+|++|+..+|+++... +..-.+||+++|+..+ |.|..+ ..+....+ .+.++||||||.+
T Consensus 159 ~~~gi~V~~~tGd~~~~~-~~~~~~~IlVtTpEkl--d~llr~---~~~~~~l~---~v~~vIiDEvH~l 219 (1724)
T 4f92_B 159 ATYGITVAELTGDHQLCK-EEISATQIIVCTPEKW--DIITRK---GGERTYTQ---LVRLIILDEIHLL 219 (1724)
T ss_dssp TTTTCCEEECCSSCSSCC-TTGGGCSEEEECHHHH--HHHTTS---STTHHHHT---TEEEEEETTGGGG
T ss_pred hhCCCEEEEEECCCCCCc-cccCCCCEEEECHHHH--HHHHcC---Cccchhhc---CcCEEEEecchhc
Confidence 999999999999876433 2345689999999873 444221 11223455 8999999999943
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.70 E-value=1.2e-16 Score=180.71 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=64.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHH-HcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYT 97 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A-L~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~Yg 97 (869)
|+.+.||+|||++|++|++-.+ -.|..|.|++|+..||.|-++.++ |+++++..++++. ...-..-+.+.
T Consensus 6 lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---~~~~~~~~~~~ 76 (431)
T 2v6i_A 6 VLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---ERTGNEIVDFM 76 (431)
T ss_dssp EEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------------CCCSEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---cCCCCceEEEE
Confidence 8999999999999988887344 457799999999999998776654 7888866554332 11112345566
Q ss_pred CCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 98 NNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 98 T~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
|.+.+. ..+.. ....+ .+.++||||+|.+
T Consensus 77 ~~~~l~-----~~l~~---~~~~~---~l~~vViDEaH~~ 105 (431)
T 2v6i_A 77 CHSTFT-----MKLLQ---GVRVP---NYNLYIMDEAHFL 105 (431)
T ss_dssp EHHHHH-----HHHHH---TCCCC---CCSEEEEESTTCC
T ss_pred chHHHH-----HHHhc---Ccccc---CCCEEEEeCCccC
Confidence 655431 11111 11234 7999999999995
No 51
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.70 E-value=3.6e-17 Score=197.81 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=77.2
Q ss_pred CCchhhHHHHHHHh-CCC--eEEecCCCcHHHHHHHHHHHHH--H-c--CCcEEEEecCHHHHHHHHHHHHHHh-hhcCC
Q 002898 2 RHFDVQIIGGAVLH-DGS--IAEMKTGEGKTLVSTLAAYLNA--L-T--GEGVHVVTVNDYLAQRDAEWMERVH-RFLGL 72 (869)
Q Consensus 2 rp~dvQl~g~~~L~-~G~--IaEm~TGEGKTLva~lpa~l~A--L-~--G~~V~VvT~ndyLA~RDae~~~~ly-~~LGL 72 (869)
.|.++|...++... .|. ++...||+|||+ ++|+++.. + . |..+.|++|++.||.+.++.+...+ ...|.
T Consensus 93 lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~ 170 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE 170 (773)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTT
T ss_pred CChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhh
Confidence 47889999998665 454 899999999999 45554322 2 1 5668999999999998887654433 12344
Q ss_pred eEEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhh
Q 002898 73 SVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDS 136 (869)
Q Consensus 73 sv~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDs 136 (869)
.+|..... +....-.++|+|+|++.+. + .+... ..+. .+.++||||+|.
T Consensus 171 ~vG~~i~~----~~~~~~~~~I~v~T~G~l~----r-~l~~~---~~l~---~~~~lIlDEah~ 219 (773)
T 2xau_A 171 EVGYSIRF----ENKTSNKTILKYMTDGMLL----R-EAMED---HDLS---RYSCIILDEAHE 219 (773)
T ss_dssp TEEEEETT----EEECCTTCSEEEEEHHHHH----H-HHHHS---TTCT---TEEEEEECSGGG
T ss_pred eecceecc----ccccCCCCCEEEECHHHHH----H-HHhhC---cccc---CCCEEEecCccc
Confidence 44432111 1112235789999998862 2 21111 2344 899999999996
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.68 E-value=1.2e-15 Score=197.42 Aligned_cols=125 Identities=17% Similarity=0.114 Sum_probs=97.9
Q ss_pred CchhhHHHHHHHhCCC---eEEecCCCcHHHHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHHHHHHHh-hhcCCeEE
Q 002898 3 HFDVQIIGGAVLHDGS---IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVH-RFLGLSVG 75 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~---IaEm~TGEGKTLva~lpa~l~AL~---G~~V~VvT~ndyLA~RDae~~~~ly-~~LGLsv~ 75 (869)
+.|+|-.+...+++++ ++.+.||+|||++|-+|++ .+|. |..|.+++|+..||.+-+.++...| ..+|++|+
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail-~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~ 1005 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAIL-RMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVV 1005 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHH-HHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHH-HHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEE
Confidence 5689999999886543 8999999999999999996 6653 5679999999999999999887655 57999999
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 76 ~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..+|+.+...+. .-.+||+++|++.+ |.|..+... ....+ .+.++|+||+|.+
T Consensus 1006 ~ltGd~~~~~~~-~~~~~IiV~TPEkl--d~llr~~~~---~~~l~---~v~lvViDE~H~l 1058 (1724)
T 4f92_B 1006 LLTGETSTDLKL-LGKGNIIISTPEKW--DILSRRWKQ---RKNVQ---NINLFVVDEVHLI 1058 (1724)
T ss_dssp ECCSCHHHHHHH-HHHCSEEEECHHHH--HHHHTTTTT---CHHHH---SCSEEEECCGGGG
T ss_pred EEECCCCcchhh-cCCCCEEEECHHHH--HHHHhCccc---ccccc---eeeEEEeechhhc
Confidence 999987654442 34589999999874 544333222 12344 7999999999965
No 53
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.68 E-value=6.8e-17 Score=192.57 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=54.0
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCcceec
Q 002898 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDIIL 421 (869)
Q Consensus 352 ~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIkL 421 (869)
.+.++||||+|++.++.+++.|++.|+++..+|++ +++..+-. +.| .-.|.|||++++||+||.+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLVaTdv~e~GIDipv 474 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGA 474 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEEECGGGGTTCCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEEECchhhcceeeCC
Confidence 57899999999999999999999999999999983 34433322 345 4579999999999999973
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.67 E-value=4.5e-15 Score=169.06 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEeecCCcchhhHHHHHH-HcCCC-ccEEEEcC
Q 002898 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRK-YAITISTN 411 (869)
Q Consensus 335 ~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~-gi~~~vLna~~~~~~~Ea~Iia-~AG~~-g~VTIATn 411 (869)
...|..++.+.+.+....|.++||||.++..++.+...|... |+++..+++.+...+|+..+-. +.|.. ..+.|+|+
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~ 402 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 402 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc
Confidence 456788888888777788999999999999999999999886 9999999998666666654444 45533 34889999
Q ss_pred CCcCCccee
Q 002898 412 MAGRGTDII 420 (869)
Q Consensus 412 mAGRGTDIk 420 (869)
++|+|+|+.
T Consensus 403 ~~~~Glnl~ 411 (500)
T 1z63_A 403 AGGFGINLT 411 (500)
T ss_dssp CC-CCCCCT
T ss_pred cccCCCchh
Confidence 999999984
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.67 E-value=2.8e-15 Score=185.42 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=71.8
Q ss_pred eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHH-CCCCeEEeecCCcchhhHHHHHH-HcCC-CccEEEE
Q 002898 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ-QGIPHNVLNARPKYAAREAETVA-QAGR-KYAITIS 409 (869)
Q Consensus 333 ~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~-~gi~~~vLna~~~~~~~Ea~Iia-~AG~-~g~VTIA 409 (869)
.....|..++.+.+.. ..+..+||||+++..++.++..|.. .|+++..+|+++...+++..+-. +.|. .-.|.||
T Consensus 485 ~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp TTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred cCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3456788888877765 5688999999999999999999995 69999999998777778766555 5664 3689999
Q ss_pred cCCCcCCccee
Q 002898 410 TNMAGRGTDII 420 (869)
Q Consensus 410 TnmAGRGTDIk 420 (869)
|+++|+|+|+.
T Consensus 563 T~v~~~GlDl~ 573 (968)
T 3dmq_A 563 SEIGSEGRNFQ 573 (968)
T ss_dssp SCCTTCSSCCT
T ss_pred cchhhcCCCcc
Confidence 99999999994
No 56
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.63 E-value=4.6e-16 Score=168.64 Aligned_cols=88 Identities=23% Similarity=0.256 Sum_probs=73.8
Q ss_pred eEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEE
Q 002898 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (869)
Q Consensus 330 ~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTI 408 (869)
.++.+..+|..++.+.+... .+.++||||++++.++.++..|...|+.+..||+++.+.+++..+.. +.| ...|+|
T Consensus 7 ~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLV 83 (300)
T 3i32_A 7 AVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLV 83 (300)
T ss_dssp EEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEE
T ss_pred EEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEE
Confidence 44567788999888777553 38899999999999999999999999999999998777777765555 445 568999
Q ss_pred EcCCCcCCccee
Q 002898 409 STNMAGRGTDII 420 (869)
Q Consensus 409 ATnmAGRGTDIk 420 (869)
|||+|+||+||.
T Consensus 84 aT~va~~Gidi~ 95 (300)
T 3i32_A 84 ATDVAARGLDIP 95 (300)
T ss_dssp ECSTTTCSTTCC
T ss_pred EechhhcCcccc
Confidence 999999999994
No 57
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.62 E-value=5.8e-15 Score=153.01 Aligned_cols=129 Identities=24% Similarity=0.239 Sum_probs=106.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH--------cCCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL--------TGEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL--------~G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
.|+++|..+...+++|+ ++.+.||+|||++|.+|++.... .|..|.|++|+..||.+-++.+..+...+|
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 130 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR 130 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 58999999999998887 99999999999999999975444 256799999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhc
Q 002898 72 LSVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (869)
Q Consensus 72 Lsv~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (869)
++++++.++.+..... ....+||+++|++.+ .+++.... ...+ .+.++||||||.++ |.
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~~------~~~~---~~~~lViDEah~l~-~~ 191 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL-IDFLECGK------TNLR---RTTYLVLDEADRML-DM 191 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHTS------CCCT---TCCEEEETTHHHHH-HT
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcCC------CCcc---cccEEEEeCHHHHh-hh
Confidence 9999999998755443 334689999999987 45554321 2234 79999999999986 44
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.62 E-value=2e-14 Score=171.31 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=54.4
Q ss_pred CcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-Hc--CCCccEEEEcCCCcCCcceec
Q 002898 354 RPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QA--GRKYAITISTNMAGRGTDIIL 421 (869)
Q Consensus 354 rPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~A--G~~g~VTIATnmAGRGTDIkL 421 (869)
..-+|||.|.+.++.++..|.+.|+.+.++|+.+...+|+..+-. +. | .-.|.||||+++||+||.+
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi~v 390 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNLSI 390 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCCCB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCcCc
Confidence 345888999999999999999999999999998766666544433 44 4 3589999999999999943
No 59
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.61 E-value=1.6e-15 Score=155.54 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=73.3
Q ss_pred CeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEE
Q 002898 329 IQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAIT 407 (869)
Q Consensus 329 d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VT 407 (869)
..+.....+|..++.+.+.. ..+.++||||+++..++.++..|...|+++..+|+++.+.+++..+-. +.| ...|+
T Consensus 9 ~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vl 85 (212)
T 3eaq_A 9 EAVPAPVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVL 85 (212)
T ss_dssp EEEECCTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEE
T ss_pred eEEeCCHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEE
Confidence 34556778899988877754 458899999999999999999999999999999998766666654544 445 56799
Q ss_pred EEcCCCcCCccee
Q 002898 408 ISTNMAGRGTDII 420 (869)
Q Consensus 408 IATnmAGRGTDIk 420 (869)
||||+|+||+||.
T Consensus 86 vaT~~~~~Gidi~ 98 (212)
T 3eaq_A 86 VATDVAARGLDIP 98 (212)
T ss_dssp EECTTTTCSSSCC
T ss_pred EecChhhcCCCCc
Confidence 9999999999994
No 60
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=153.60 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=114.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-------~G~~V~VvT~ndyLA~RDae~~~~ly~~LGL 72 (869)
+|+++|..+...+++|+ |+++.||+|||++|++|++-... .|..|.|++|+..||.+.++.+..++..+|+
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 155 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH 155 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCc
Confidence 48999999999999888 99999999999999999974433 4778999999999999999999999999999
Q ss_pred eEEEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecC
Q 002898 73 SVGLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150 (869)
Q Consensus 73 sv~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg 150 (869)
+++++.++.+..... ..-+++|++||++.+ .++++.. . ....+ .+.++||||||.++ |.+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~~----~-~~~~~---~l~~lViDEah~l~-~~~-------- 217 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRL-LDHMQNT----P-GFMYK---NLQCLVIDEADRIL-DVG-------- 217 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHH-HHHHHHC----T-TCCCT---TCCEEEECSHHHHH-HTT--------
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHH-HHHHHcc----C-Ccccc---cCCEEEEcChHHHh-hhh--------
Confidence 999999988754432 334689999999886 4444321 1 12234 79999999999986 443
Q ss_pred CCCCCcccHHHHHHHHHHcc
Q 002898 151 EASKDVARYPVAAKVAELLV 170 (869)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~ 170 (869)
+...+..+...+.
T Consensus 218 -------~~~~l~~i~~~~~ 230 (262)
T 3ly5_A 218 -------FEEELKQIIKLLP 230 (262)
T ss_dssp -------CHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHhCC
Confidence 3346666776664
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.56 E-value=4.6e-14 Score=145.14 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=102.9
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-------~G~~V~VvT~ndyLA~RDae~~~~ly~~LGL 72 (869)
.|+++|..+...+++|+ |+.+.||+|||+++.+|++-..+ .|..|.|++|+..||.+-++.+..+....|+
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 58999999999998887 99999999999999999974332 4678999999999999999999999999999
Q ss_pred eEEEEcCCCCHH-HHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhc
Q 002898 73 SVGLIQRGMIPE-ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (869)
Q Consensus 73 sv~~i~~~~~~~-~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (869)
+++++.++.+.. +......+||+++|++.+ .+++.... ..... .+.++||||||.++ |.
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~l~~~~-----~~~~~---~~~~lViDEah~~~-~~ 186 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRL-LQHMDETV-----SFHAT---DLQMLVLDEADRIL-DM 186 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHH-HHHHHHCS-----SCCCT---TCCEEEETTHHHHH-HT
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHH-HHHHHhcC-----Ccccc---cccEEEEeChHHHh-cC
Confidence 999999886633 333445789999999886 33443210 11233 78999999999876 43
No 62
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.52 E-value=8.9e-14 Score=144.66 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=103.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------------CCcEEEEecCHHHHHHHHHHHHHHh
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------------GEGVHVVTVNDYLAQRDAEWMERVH 67 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~------------G~~V~VvT~ndyLA~RDae~~~~ly 67 (869)
.|+|+|..+...+++|+ ++.+.||+|||+++++|++...+. |..|.|++|+..||.+.++.+..+.
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 58999999999999887 999999999999999999754442 3489999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 68 RFLGLSVGLIQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 68 ~~LGLsv~~i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
...+++++++.++.+... +.....+||+++|++.+ .+++... ....+ .+.++||||||.++
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~~~ 187 (253)
T 1wrb_A 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRL-VDFIEKN------KISLE---FCKYIVLDEADRML 187 (253)
T ss_dssp TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHH-HHHHHTT------SBCCT---TCCEEEEETHHHHH
T ss_pred ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHH-HHHHHcC------CCChh---hCCEEEEeCHHHHH
Confidence 999999999998876433 33445689999999886 3444321 11234 78999999999986
No 63
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.51 E-value=9.4e-14 Score=145.38 Aligned_cols=128 Identities=23% Similarity=0.248 Sum_probs=104.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~---G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.|+++|..+...+.+|+ |+.+.||+|||+++.+|++-..+. +..|.|++|+..||.+-++.+..+...+|+++++
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 58999999999999887 999999999999999999744443 3469999999999999999999999999999999
Q ss_pred EcCCCCHHH--HHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 77 IQRGMIPEE--RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 77 i~~~~~~~~--rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+.++.+... +.....++|+++|++.+ .++++.. . ....+ .+.++||||||.++
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~~----~-~~~l~---~~~~lViDEah~l~ 199 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRL-IDHLENT----K-GFNLR---ALKYLVMDEADRIL 199 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHH-HHHHHHS----T-TCCCT---TCCEEEECSHHHHH
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC----C-CcCcc---ccCEEEEcChhhhh
Confidence 999877443 33456789999999886 3444321 1 11234 78999999999886
No 64
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=148.24 Aligned_cols=131 Identities=20% Similarity=0.321 Sum_probs=102.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+|+|..+...+.+|+ ++.+.||+|||++|++|++.... .|..|.|++|+..||.+-++.+..++..+|+++.
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIH 130 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEE
Confidence 58999999999999887 99999999999999999974433 3557999999999999999999999999999998
Q ss_pred EEcCCCCHHHH---HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhh
Q 002898 76 LIQRGMIPEER---RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLID 140 (869)
Q Consensus 76 ~i~~~~~~~~r---k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiD 140 (869)
++.++.....+ .....+||+++|++.+ .++++. .......+ .+.++||||||.++-+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l-~~~l~~----~~~~~~~~---~~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRL-IYLLKQ----DPPGIDLA---SVEWLVVDESDKLFED 190 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHH-HHHHHS----SSCSCCCT---TCCEEEESSHHHHHHH
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHH-HHHHHh----CCCCcccc---cCcEEEEeChHHhccc
Confidence 87765332221 1234579999999886 333332 21112244 7899999999998743
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.51 E-value=8.5e-14 Score=141.74 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=102.2
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCcEEEEecCHHHHHHHHHHHHHHhhhc----C
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL----G 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----G~~V~VvT~ndyLA~RDae~~~~ly~~L----G 71 (869)
.|+++|..+...+.+|+ ++.+.||+|||+++.+|++ ..+. |..|.|++|+..||.+-++.+..+...+ +
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 104 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM-EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 104 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHH-HHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccc
Confidence 58999999999998877 9999999999999999997 4443 5689999999999999999999999888 8
Q ss_pred CeEEEEcCCCCHHHHHhc--cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 72 LSVGLIQRGMIPEERRSN--YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 72 Lsv~~i~~~~~~~~rk~a--Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++++++.++.+....... -.+||+++|++.+ .++++.. ..... .+.++||||||.++
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~---~~~~lViDEah~~~ 163 (219)
T 1q0u_A 105 IVARCLIGGTDKQKALEKLNVQPHIVIGTPGRI-NDFIREQ------ALDVH---TAHILVVDEADLML 163 (219)
T ss_dssp CCEEEECCCSHHHHTTCCCSSCCSEEEECHHHH-HHHHHTT------CCCGG---GCCEEEECSHHHHH
T ss_pred eEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHH-HHHHHcC------CCCcC---cceEEEEcCchHHh
Confidence 999999988765444333 3579999999886 3444321 12234 78999999999986
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.50 E-value=9.8e-14 Score=142.70 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=102.5
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv 74 (869)
.|+|+|..+...+.+|+ |+.+.||+|||+++++|+. ..+ .|..|.|++|+..||.+-++.+..+...+ |+++
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 124 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL-DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLEC 124 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceE
Confidence 48999999999999887 9999999999999999996 444 24689999999999999999999998766 9999
Q ss_pred EEEcCCCCHHHHH-hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 75 GLIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 75 ~~i~~~~~~~~rk-~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++..++.+...+. ....+||+++|++.+ .++++.. ....+ .++++||||||.++
T Consensus 125 ~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~ 179 (230)
T 2oxc_A 125 HVFIGGTPLSQDKTRLKKCHIAVGSPGRI-KQLIELD------YLNPG---SIRLFILDEADKLL 179 (230)
T ss_dssp EEECTTSCHHHHHHHTTSCSEEEECHHHH-HHHHHTT------SSCGG---GCCEEEESSHHHHH
T ss_pred EEEeCCCCHHHHHHhccCCCEEEECHHHH-HHHHhcC------Ccccc---cCCEEEeCCchHhh
Confidence 9999988755443 345689999999886 3343321 12234 78999999999986
No 67
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=141.32 Aligned_cols=126 Identities=23% Similarity=0.305 Sum_probs=96.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH---------cCCcEEEEecCHHHHHHHHHHHHHHhhhc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL---------TGEGVHVVTVNDYLAQRDAEWMERVHRFL 70 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL---------~G~~V~VvT~ndyLA~RDae~~~~ly~~L 70 (869)
.|+++|..+...+++|+ |+.+.||+|||++|.+|++.... .|..+.|++|+..||.+-++++..+. ..
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~ 120 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YK 120 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-cc
Confidence 68999999999999887 99999999999999999974332 56789999999999999999998875 56
Q ss_pred CCeEEEEcCCCCHHHH--HhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 71 GLSVGLIQRGMIPEER--RSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 71 GLsv~~i~~~~~~~~r--k~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
|+++.++.++.+...+ ...-.+||+++|++.+ .+++... ....+ .+.++||||||.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~ 180 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL-NDLQMNN------SVNLR---SITYLVIDEADKML 180 (228)
T ss_dssp TCCEEEECC------CHHHHHSCCSEEEECHHHH-HHHHHTT------CCCCT---TCCEEEECCHHHHH
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHH-HHHHHcC------CcCcc---cceEEEEECHHHHh
Confidence 8999999988664332 2334579999999886 3333221 12234 79999999999986
No 68
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.50 E-value=4.6e-12 Score=150.93 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=92.4
Q ss_pred eeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEE
Q 002898 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (869)
Q Consensus 279 It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV 358 (869)
.++..++..-.....+|.|......+. .-.++..+.. |... ..|.........+...++.++....+.|.+|||
T Consensus 371 l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r-~~~l-~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlV 444 (664)
T 1c4o_A 371 LRFEEFLERVSQVVFVSATPGPFELAH----SGRVVEQIIR-PTGL-LDPLVRVKPTENQILDLMEGIRERAARGERTLV 444 (664)
T ss_dssp CCHHHHHHTCSEEEEEESSCCHHHHHH----CSEEEEECSC-TTCC-CCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccHHHHHhhcCCEEEEecCCCHHHHHh----hhCeeeeeec-cCCC-CCCeEEEecccchHHHHHHHHHHHHhcCCEEEE
Confidence 345556655567788999987533222 1122222211 1100 112222334456677788888887788999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 359 ~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
||+|...++.|+..|...|+++..+|+.+.+.+|+..+-. +.| .-.|+||||+++||+||.
T Consensus 445 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip 506 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIP 506 (664)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCT
T ss_pred EECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCC
Confidence 9999999999999999999999999997666666543333 456 457999999999999994
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.48 E-value=3.7e-13 Score=166.99 Aligned_cols=121 Identities=21% Similarity=0.118 Sum_probs=81.1
Q ss_pred CCchhhHHHHHHHhC----------------CCeEEecCCCcHHHHHHHHHHHHHHc----CCcEEEEecCHHHHHHHHH
Q 002898 2 RHFDVQIIGGAVLHD----------------GSIAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAE 61 (869)
Q Consensus 2 rp~dvQl~g~~~L~~----------------G~IaEm~TGEGKTLva~lpa~l~AL~----G~~V~VvT~ndyLA~RDae 61 (869)
.|+|.|.-|+..+.+ +-++.|.||+|||+++ +++. ..+. +..|.||||+..|+.|-.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 478899999987653 3399999999999997 5554 3333 2589999999999998877
Q ss_pred HHHHHhhhcCCeEEEEcCCCC-HHHHHh--ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 62 WMERVHRFLGLSVGLIQRGMI-PEERRS--NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 62 ~~~~ly~~LGLsv~~i~~~~~-~~~rk~--aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.+..|... .+.++.+ ...+.. .-.++|+++|+..|. +.+... ....... ++.++||||||++.
T Consensus 349 ~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~-~~l~~~----~~~~~~~---~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 349 EYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLN-NLMKAE----SDLPVYN---QQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHH-HHHHHC----CCCGGGG---SCEEEEEESCCTTH
T ss_pred HHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHH-HHHhcc----cchhccc---cccEEEEEccchhc
Confidence 77665431 1223322 222222 235799999999873 222221 0011234 67899999999975
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.48 E-value=2.5e-13 Score=136.09 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=110.8
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv 74 (869)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|++ ..+. +..+.|++|+..|+.+-++++..+...+ ++++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~-~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 103 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL-ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHH-HHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHH-HHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 58999999999999887 9999999999999999997 4442 4579999999999999999999999888 8999
Q ss_pred EEEcCCCCHHHHH--hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCC
Q 002898 75 GLIQRGMIPEERR--SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA 152 (869)
Q Consensus 75 ~~i~~~~~~~~rk--~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~ 152 (869)
++..++.+..... ....++|+++|++.+ .+.+... ....+ .+.++||||||.++ |..
T Consensus 104 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~-~~~---------- 162 (206)
T 1vec_A 104 MATTGGTNLRDDIMRLDDTVHVVIATPGRI-LDLIKKG------VAKVD---HVQMIVLDEADKLL-SQD---------- 162 (206)
T ss_dssp EEECSSSCHHHHHHHTTSCCSEEEECHHHH-HHHHHTT------CSCCT---TCCEEEEETHHHHT-STT----------
T ss_pred EEEeCCccHHHHHHhcCCCCCEEEeCHHHH-HHHHHcC------CcCcc---cCCEEEEEChHHhH-hhC----------
Confidence 9999988754432 334689999999886 3333321 11233 78999999999975 321
Q ss_pred CCCcccHHHHHHHHHHcc
Q 002898 153 SKDVARYPVAAKVAELLV 170 (869)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~ 170 (869)
+...+..+...+.
T Consensus 163 -----~~~~l~~i~~~~~ 175 (206)
T 1vec_A 163 -----FVQIMEDIILTLP 175 (206)
T ss_dssp -----THHHHHHHHHHSC
T ss_pred -----cHHHHHHHHHhCC
Confidence 3456666666664
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.8e-12 Score=155.55 Aligned_cols=86 Identities=23% Similarity=0.271 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCc--cEEEEcC
Q 002898 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITISTN 411 (869)
Q Consensus 335 ~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g--~VTIATn 411 (869)
...|...+.+.+.+..+.|.+|||||......+.|...|...|+++..+++.+...+|++.|-. ++|..+ .+.|+|.
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc
Confidence 3568888888888888889999999999999999999999999999999998666666654444 455445 5999999
Q ss_pred CCcCCccee
Q 002898 412 MAGRGTDII 420 (869)
Q Consensus 412 mAGRGTDIk 420 (869)
.+|.|+|+.
T Consensus 634 agg~GlNL~ 642 (800)
T 3mwy_W 634 AGGLGINLM 642 (800)
T ss_dssp HHTTTCCCT
T ss_pred cccCCCCcc
Confidence 999999984
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.47 E-value=7.2e-14 Score=150.66 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=100.9
Q ss_pred CCchhhHHHHHHHhCC--C--eEEecCCCcHHHHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHHHHHHHhhhc-CCe
Q 002898 2 RHFDVQIIGGAVLHDG--S--IAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLS 73 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--~--IaEm~TGEGKTLva~lpa~l~AL~---G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLs 73 (869)
+|+++|..+++.++.| + |+.+.||+|||++|++|++-.... +..|.|++|++.||.+.+..+..+..++ +++
T Consensus 114 ~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~ 193 (300)
T 3fmo_B 114 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 193 (300)
T ss_dssp SCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcE
Confidence 6999999999999987 4 999999999999999999733332 2369999999999999999999998876 799
Q ss_pred EEEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 74 VGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 74 v~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
+++..++.+.. +.....+||++||++.+ .|+|.. . .....+ .+.++||||||.|+
T Consensus 194 ~~~~~~~~~~~-~~~~~~~~IlV~TP~~l-~~~l~~----~-~~~~l~---~l~~lVlDEad~l~ 248 (300)
T 3fmo_B 194 LAYAVRGNKLE-RGQKISEQIVIGTPGTV-LDWCSK----L-KFIDPK---KIKVFVLDEADVMI 248 (300)
T ss_dssp EEEESTTCCCC-TTCCCCCSEEEECHHHH-HHHHTT----T-CCCCGG---GCSEEEETTHHHHH
T ss_pred EEEEeCCccHh-hhhcCCCCEEEECHHHH-HHHHHh----c-CCCChh---hceEEEEeCHHHHh
Confidence 99988876532 23356789999999986 444422 1 112234 79999999999987
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.47 E-value=7.4e-12 Score=148.47 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHH-hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCc--cEEEEc
Q 002898 335 ARGKWEYARQEVESMF-RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKY--AITIST 410 (869)
Q Consensus 335 ~~~K~~aii~ei~~~~-~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g--~VTIAT 410 (869)
...|+..+...+.... ..|.+|||||.+....+.+...|...|+++..+++.+...+|++.+-. +.|... .+.|+|
T Consensus 397 ~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 3456655433333322 458999999999999999999999999999999998766666654444 566544 489999
Q ss_pred CCCcCCccee
Q 002898 411 NMAGRGTDII 420 (869)
Q Consensus 411 nmAGRGTDIk 420 (869)
..+|+|+|+.
T Consensus 477 ~a~g~Glnl~ 486 (644)
T 1z3i_X 477 KAGGCGLNLI 486 (644)
T ss_dssp GGSCTTCCCT
T ss_pred ccccCCcccc
Confidence 9999999983
No 74
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.47 E-value=1.1e-13 Score=143.13 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=97.6
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+++|..+...+.+|+ |+.+.||+|||+++++|++ ..+ .+..|.|++|+..||.+-++.+..+...+|+++.
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL-QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHH-HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHH-HHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEE
Confidence 48999999999999887 9999999999999999997 454 3568999999999999999999999999999999
Q ss_pred EEcCCCCHHHHH--hccC-CCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERR--SNYR-CDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk--~aY~-~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
...++.+..... .... ++|+++|++.+ ++++.... .... .+.++||||||.++
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~---~~~~lViDEah~~~ 186 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIVVGTPGRV-FDMLNRRY------LSPK---WIKMFVLDEADEML 186 (237)
T ss_dssp EECC-------------CCCSEEEECHHHH-HHHHHTTS------SCST---TCCEEEEESHHHHH
T ss_pred EEECCCchHHHHHHHhcCCCCEEEECHHHH-HHHHHhCC------cCcc---cCcEEEECCchHhh
Confidence 988876533222 2223 79999999886 44543321 1223 78999999999986
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.45 E-value=3.7e-13 Score=136.66 Aligned_cols=127 Identities=22% Similarity=0.237 Sum_probs=102.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc----CCcEEEEecCHHHHHHHHHHHHHHhhhc-CCeE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT----GEGVHVVTVNDYLAQRDAEWMERVHRFL-GLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~----G~~V~VvT~ndyLA~RDae~~~~ly~~L-GLsv 74 (869)
.|+|.|..+...+.+|+ ++.+.||.|||+++.+|+. ..+. +..+.|++|+..|+.+-++++..+...+ |+++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~-~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 114 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH-HHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH-HhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceE
Confidence 48999999999998887 9999999999999999997 4432 3479999999999999999999998887 8999
Q ss_pred EEEcCCCCHHHHHhc---cCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhh
Q 002898 75 GLIQRGMIPEERRSN---YRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 75 ~~i~~~~~~~~rk~a---Y~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
+.+.++.+....... -.++|+++|++.+ .++++.. ....+ .++++||||||.++-
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI-LALARNK------SLNLK---HIKHFILDECDKMLE 172 (220)
T ss_dssp EEESCCSCHHHHHHHHHHSCCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEESHHHHHS
T ss_pred EEEeCCCChHHHHHHHhcCCCCEEEeCHHHH-HHHHHhC------CCCcc---cCCEEEEcCHHHHhc
Confidence 999998875544332 2469999999876 3333221 12234 899999999999863
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.44 E-value=3.7e-13 Score=136.89 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=97.7
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH----cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL----TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL----~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+|.|..+...+.+|+ ++.+.||.|||+++++|++ ..+ .+..+.|++|+..||.+-++.+..+....|++++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 114 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH 114 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH-HHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHH-HHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEE
Confidence 58999999999998887 9999999999999999997 444 3458999999999999999999999999999999
Q ss_pred EEcCCCCHHHHH-hccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERR-SNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk-~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
...++.+..... ....++|+++|++.+ ++++... ..... .+.++||||||.++
T Consensus 115 ~~~g~~~~~~~~~~~~~~~iiv~Tp~~l-~~~~~~~------~~~~~---~~~~iViDEah~~~ 168 (224)
T 1qde_A 115 ACIGGTSFVEDAEGLRDAQIVVGTPGRV-FDNIQRR------RFRTD---KIKMFILDEADEML 168 (224)
T ss_dssp EECC----------CTTCSEEEECHHHH-HHHHHTT------SSCCT---TCCEEEEETHHHHH
T ss_pred EEeCCcchHHHHhcCCCCCEEEECHHHH-HHHHHhC------Ccchh---hCcEEEEcChhHHh
Confidence 999887644433 233589999999876 3333321 12233 78999999999976
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.42 E-value=1.1e-12 Score=131.24 Aligned_cols=124 Identities=25% Similarity=0.258 Sum_probs=98.0
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHH-------cCCcEEEEecCHHHHHHHHHHHHHHhhhcCC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-------TGEGVHVVTVNDYLAQRDAEWMERVHRFLGL 72 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-------~G~~V~VvT~ndyLA~RDae~~~~ly~~LGL 72 (869)
.|+|+|..+...+.+|+ ++.+.||+|||+++++|++ ..+ .|..|.|++|+..|+.+-++.+..++.. +
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~-~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 99 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA-ERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--L 99 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH-HHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--S
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHH-HHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--c
Confidence 58999999999999887 9999999999999999997 444 3567999999999999999998887654 7
Q ss_pred eEEEEcCCCCHH--HHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 73 SVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 73 sv~~i~~~~~~~--~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++....++.+.. .+.....++|+++|++.+ .++++.. ....+ .++++||||||.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~iViDEah~~~ 157 (207)
T 2gxq_A 100 KVVAVYGGTGYGKQKEALLRGADAVVATPGRA-LDYLRQG------VLDLS---RVEVAVLDEADEML 157 (207)
T ss_dssp CEEEECSSSCSHHHHHHHHHCCSEEEECHHHH-HHHHHHT------SSCCT---TCSEEEEESHHHHH
T ss_pred eEEEEECCCChHHHHHHhhCCCCEEEECHHHH-HHHHHcC------Ccchh---hceEEEEEChhHhh
Confidence 788888876533 223345689999999885 3444321 12234 79999999999986
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.39 E-value=3.1e-12 Score=126.78 Aligned_cols=88 Identities=20% Similarity=0.130 Sum_probs=72.8
Q ss_pred eEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEE
Q 002898 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (869)
Q Consensus 330 ~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTI 408 (869)
.+.....+|..++.+.+.. ..+.++||||++...++.++..|...|+++..+|+++.+.+++..+-. +.| ...|.|
T Consensus 10 ~~~~~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLv 86 (172)
T 1t5i_A 10 YVKLKDNEKNRKLFDLLDV--LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILV 86 (172)
T ss_dssp EEECCGGGHHHHHHHHHHH--SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE
T ss_pred EEECChHHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEE
Confidence 3445678899988877764 357899999999999999999999999999999998767677655554 445 568999
Q ss_pred EcCCCcCCccee
Q 002898 409 STNMAGRGTDII 420 (869)
Q Consensus 409 ATnmAGRGTDIk 420 (869)
||+++|||+|+.
T Consensus 87 aT~~~~~Gldi~ 98 (172)
T 1t5i_A 87 ATNLFGRGMDIE 98 (172)
T ss_dssp ESSCCSTTCCGG
T ss_pred ECCchhcCcchh
Confidence 999999999994
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.38 E-value=8.1e-12 Score=122.32 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=72.6
Q ss_pred eEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEE
Q 002898 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (869)
Q Consensus 330 ~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTI 408 (869)
.+.....+|+.++.+.+.. ..+.++||||+|...++.++..|...|+++..+|+++.+.+++..+-. +.| ...|.|
T Consensus 14 ~~~~~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv 90 (163)
T 2hjv_A 14 VIQVREENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLV 90 (163)
T ss_dssp EEECCGGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE
T ss_pred EEECChHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE
Confidence 3455778899988877765 467899999999999999999999999999999998766666654444 455 567999
Q ss_pred EcCCCcCCccee
Q 002898 409 STNMAGRGTDII 420 (869)
Q Consensus 409 ATnmAGRGTDIk 420 (869)
||+++|||+|+.
T Consensus 91 ~T~~~~~Gld~~ 102 (163)
T 2hjv_A 91 ATDVAARGIDIE 102 (163)
T ss_dssp ECGGGTTTCCCS
T ss_pred ECChhhcCCchh
Confidence 999999999995
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.33 E-value=6.2e-12 Score=126.34 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=60.7
Q ss_pred eEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEE
Q 002898 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (869)
Q Consensus 330 ~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTI 408 (869)
.++....+|..++.+.+.. ...+.++||||+++..++.++..|...|+++..+++++.+.+++..+-. +.| ...|.|
T Consensus 24 ~~~v~~~~K~~~L~~ll~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLv 101 (185)
T 2jgn_A 24 VVWVEESDKRSFLLDLLNA-TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILV 101 (185)
T ss_dssp EEECCGGGHHHHHHHHHHH-C-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEE
T ss_pred EEEeCcHHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEE
Confidence 3456778899988877765 3467899999999999999999999999999999998666666654444 455 557999
Q ss_pred EcCCCcCCccee
Q 002898 409 STNMAGRGTDII 420 (869)
Q Consensus 409 ATnmAGRGTDIk 420 (869)
||+++|||+|+.
T Consensus 102 aT~~~~~Gldi~ 113 (185)
T 2jgn_A 102 ATAVAARGLDIS 113 (185)
T ss_dssp EEC------CCC
T ss_pred EcChhhcCCCcc
Confidence 999999999994
No 81
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=129.21 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=90.2
Q ss_pred CCCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc------CCcEEEEecCHHHHHH-HHHHHHHHhhhcC
Q 002898 1 MRHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT------GEGVHVVTVNDYLAQR-DAEWMERVHRFLG 71 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~------G~~V~VvT~ndyLA~R-Dae~~~~ly~~LG 71 (869)
+.|+|.|..+...+.+|+ ++.+.||.|||+++.+|+.-.... +..|.|++|+..|+.+ -.+++..+... +
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~ 110 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 110 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-T
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-C
Confidence 368999999999888766 999999999999999998633222 6789999999999998 66777777655 8
Q ss_pred CeEEEEcCCCCHH--HHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 72 LSVGLIQRGMIPE--ERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 72 Lsv~~i~~~~~~~--~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++++...++.+.. .+.....++|+++|+..| .+++.............. .++++||||||.++
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~~~~~~~~~~~---~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQIL-ENSLLNLENGEDAGVQLS---DFSLIIIDECHHTN 175 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHH-HHHHHC-------CCCGG---GCSEEEETTC----
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHH-HHHHhccCcccccccchh---cccEEEEECchhhc
Confidence 8999888765422 122334689999999876 233322111000012234 78999999999985
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.31 E-value=5.7e-12 Score=127.44 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=71.6
Q ss_pred eEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEE
Q 002898 330 QSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITI 408 (869)
Q Consensus 330 ~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTI 408 (869)
.++....+|...+.+.+.. .+.++||||+++..++.++..|...|+++..+++.+.+.+++..+-. +.| .-.|.|
T Consensus 34 ~~~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLv 109 (191)
T 2p6n_A 34 VEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLV 109 (191)
T ss_dssp EEECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEE
T ss_pred EEEcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEE
Confidence 3456778899888776653 46689999999999999999999999999999998766667655544 455 567999
Q ss_pred EcCCCcCCccee
Q 002898 409 STNMAGRGTDII 420 (869)
Q Consensus 409 ATnmAGRGTDIk 420 (869)
||+++|||+||.
T Consensus 110 aT~~~~~Gldi~ 121 (191)
T 2p6n_A 110 ATDVASKGLDFP 121 (191)
T ss_dssp ECHHHHTTCCCC
T ss_pred EcCchhcCCCcc
Confidence 999999999994
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=3.5e-11 Score=119.01 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCC
Q 002898 335 ARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMA 413 (869)
Q Consensus 335 ~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmA 413 (869)
..+|..++.+.+.. ..+.++||||++...++.++..|...|+++..+|+.+...+++..+-. +.| ...|+|||+++
T Consensus 18 ~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~ 94 (175)
T 2rb4_A 18 RKDKYQALCNIYGS--ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHHHTT--SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSC
T ss_pred hHhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecch
Confidence 34588887766654 256799999999999999999999999999999998766666654444 455 56899999999
Q ss_pred cCCccee
Q 002898 414 GRGTDII 420 (869)
Q Consensus 414 GRGTDIk 420 (869)
|||+|+.
T Consensus 95 ~~Gid~~ 101 (175)
T 2rb4_A 95 ARGIDVK 101 (175)
T ss_dssp CTTTCCT
T ss_pred hcCCCcc
Confidence 9999994
No 84
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.28 E-value=2.9e-11 Score=118.48 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=68.5
Q ss_pred eChhH-HHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEc
Q 002898 333 ATARG-KWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST 410 (869)
Q Consensus 333 ~t~~~-K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIAT 410 (869)
....+ |..++.+.+.. ..+.++||||+|.+.++.++..|...|+++..+|+.+...+++..+-. +.| ...|.|||
T Consensus 11 ~~~~~~K~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T 87 (165)
T 1fuk_A 11 VEEEEYKYECLTDLYDS--ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILIST 87 (165)
T ss_dssp EESGGGHHHHHHHHHHH--TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEE
T ss_pred CCcchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 34444 88887776654 356799999999999999999999999999999998666666644444 455 56899999
Q ss_pred CCCcCCccee
Q 002898 411 NMAGRGTDII 420 (869)
Q Consensus 411 nmAGRGTDIk 420 (869)
++++||+|+.
T Consensus 88 ~~~~~G~d~~ 97 (165)
T 1fuk_A 88 DLLARGIDVQ 97 (165)
T ss_dssp GGGTTTCCCC
T ss_pred ChhhcCCCcc
Confidence 9999999995
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.18 E-value=4.5e-10 Score=130.57 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=85.8
Q ss_pred CCchhhHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.|+|.|.-.+- ++.+|+ ++|+.||+|||+++++|+.. .+.+|.|+||+..|+.|-.+++.. +++++.
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~----l~~~~~ 79 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKL----LGLKTG 79 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGG----GTCCEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHh----cCCcEE
Confidence 57888877643 355666 99999999999999999863 478999999999999988876655 577777
Q ss_pred EEcCCCC----------H---------------------------------------HHHHhccCCCeEEECCCchhhhH
Q 002898 76 LIQRGMI----------P---------------------------------------EERRSNYRCDITYTNNSELGFDY 106 (869)
Q Consensus 76 ~i~~~~~----------~---------------------------------------~~rk~aY~~DI~YgT~~e~~fDy 106 (869)
.+.+... + ..|+.+..|||+++|.+-|--+.
T Consensus 80 ~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~ 159 (540)
T 2vl7_A 80 FLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKP 159 (540)
T ss_dssp EC---------------------------------------------------------CTTGGGCSEEEEETHHHHSHH
T ss_pred EecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHH
Confidence 6554210 0 01334567899999997662223
Q ss_pred HHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCC
Q 002898 107 LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRN 144 (869)
Q Consensus 107 LrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~t 144 (869)
.+..+.......... +..++|+||||.+ |.++.
T Consensus 160 ~~~~~~~~~~~~~~~---~~~~vIiDEAHnl--~~a~~ 192 (540)
T 2vl7_A 160 IRNSVFCNKDDCLKL---EDYLIVIDEAHNL--LEADK 192 (540)
T ss_dssp HHHHHSCSSTTSCCG---GGEEEEETTGGGG--GGGGG
T ss_pred HHHhhCcccccccCc---CCCEEEEEccccH--HHHHH
Confidence 333322000000223 6789999999998 43643
No 86
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.13 E-value=1.1e-09 Score=130.52 Aligned_cols=135 Identities=23% Similarity=0.265 Sum_probs=91.6
Q ss_pred eeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEE
Q 002898 279 ITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLV 358 (869)
Q Consensus 279 It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV 358 (869)
.++..++..-.....+|.|......++ .-.++..+. +|.... .|.........+...++.++....+.|.+|||
T Consensus 377 l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~-r~~~l~-~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlV 450 (661)
T 2d7d_A 377 LRFEEFEKHMHNIVYVSATPGPYEIEH----TDEMVEQII-RPTGLL-DPLIDVRPIEGQIDDLIGEIQARIERNERVLV 450 (661)
T ss_dssp CCHHHHHHTCSEEEEECSSCCHHHHHH----CSSCEEECC-CTTCCC-CCEEEEECSTTHHHHHHHHHHHHHTTTCEEEE
T ss_pred ccHHHHhccCCCEEEEecCCChhHHHh----hhCeeeeee-cccCCC-CCeEEEecccchHHHHHHHHHHHHhcCCeEEE
Confidence 345556555556778999986533222 112222211 111110 11122233445667788888887778999999
Q ss_pred EecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCcCCccee
Q 002898 359 GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAGRGTDII 420 (869)
Q Consensus 359 ~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAGRGTDIk 420 (869)
||+|...++.+++.|...|+++..+|+.+.+.+|+..+-. +.| .-.|+||||+++||+||.
T Consensus 451 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip 512 (661)
T 2d7d_A 451 TTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIP 512 (661)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCT
T ss_pred EECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccC
Confidence 9999999999999999999999999998666666644433 456 456999999999999994
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.09 E-value=1.2e-10 Score=123.46 Aligned_cols=123 Identities=13% Similarity=0.055 Sum_probs=94.2
Q ss_pred CCchhhHHHHHHHhCC--CeEEecCCCcHHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 2 RHFDVQIIGGAVLHDG--SIAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--~IaEm~TGEGKTLva~lpa~l~AL~G~-~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
.|+|.|..+...++++ .|+.+.||.|||+++.+++......|. .|.|++|+..|+.+-.+++..+....++.++.+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 6889999999876544 388999999999999888764434454 8999999999999999999988777778888888
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++.+... .....++|+++|++.+ .... ....+ .++++||||||.+.
T Consensus 193 ~~~~~~~-~~~~~~~I~v~T~~~l-----~~~~-----~~~~~---~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 193 GGASKDD-KYKNDAPVVVGTWQTV-----VKQP-----KEWFS---QFGMMMNDECHLAT 238 (282)
T ss_dssp TTCSSTT-CCCTTCSEEEECHHHH-----TTSC-----GGGGG---GEEEEEEETGGGCC
T ss_pred CCCcchh-hhccCCcEEEEchHHH-----HhhH-----HHHHh---hCCEEEEECCccCC
Confidence 8764322 2235689999999653 2211 12334 78999999999974
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.62 E-value=2e-11 Score=120.35 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcCCCc
Q 002898 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTNMAG 414 (869)
Q Consensus 336 ~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATnmAG 414 (869)
..|...+.+.+.. ..+.++||||++...++.++..|+..|+++..+|+++...+++..+-. +.| ...|.|||+++|
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~ 91 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVAA 91 (170)
Confidence 5677776665544 356789999999999999999999999999999997655556544433 344 457999999999
Q ss_pred CCccee
Q 002898 415 RGTDII 420 (869)
Q Consensus 415 RGTDIk 420 (869)
||+|+.
T Consensus 92 ~Gid~~ 97 (170)
T 2yjt_D 92 RGIDIP 97 (170)
Confidence 999994
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.01 E-value=8e-10 Score=128.63 Aligned_cols=131 Identities=16% Similarity=0.065 Sum_probs=97.9
Q ss_pred CCCchhhHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 1 MRHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 1 ~rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
+.|+|.|.-.+- ++.+|+ ++|+.||+|||+++++|+.. .+.+|.|+||+..|+.|-.+++..+...+++++
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~ 78 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITF 78 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccE
Confidence 357888887544 455777 89999999999999999974 688999999999999999999998888889999
Q ss_pred EEEcCCC---------------------------------CHH--------------------HHHhccCCCeEEECCCc
Q 002898 75 GLIQRGM---------------------------------IPE--------------------ERRSNYRCDITYTNNSE 101 (869)
Q Consensus 75 ~~i~~~~---------------------------------~~~--------------------~rk~aY~~DI~YgT~~e 101 (869)
.++.|.. +.. .|+.+-.|||+++|.+-
T Consensus 79 ~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~ 158 (551)
T 3crv_A 79 SFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPY 158 (551)
T ss_dssp EECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHH
T ss_pred EEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchH
Confidence 8876521 000 14556689999999987
Q ss_pred hhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCc
Q 002898 102 LGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNP 145 (869)
Q Consensus 102 ~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tP 145 (869)
|--+.+++.+ .... ...++||||||.+. | ++.-
T Consensus 159 l~~~~~~~~~------~~~~---~~~~vIiDEAHnl~-d-~~~~ 191 (551)
T 3crv_A 159 FFIDRYREFI------DIDL---REYMIVIDEAHNLD-K-VNEL 191 (551)
T ss_dssp HHCHHHHTTS------CCCS---TTEEEEETTGGGGG-G-GGGG
T ss_pred hcCHHHHHhc------CCCc---CCeEEEEecccchH-H-HHHh
Confidence 6222223221 1122 67899999999985 6 7653
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.81 E-value=4e-09 Score=109.01 Aligned_cols=123 Identities=20% Similarity=0.080 Sum_probs=88.8
Q ss_pred CchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc-CC----cEEEEecCHHHHHHHHHHHHHHhh-hcCCeE
Q 002898 3 HFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT-GE----GVHVVTVNDYLAQRDAEWMERVHR-FLGLSV 74 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~----~V~VvT~ndyLA~RDae~~~~ly~-~LGLsv 74 (869)
.+++|--+...+.+|+ ++...||+|||.++.++++-..+. |+ ++.++.|+..||.+-++.+...+. .+|..+
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 4788999999999998 789999999999888887644332 33 788899999999999888776554 567777
Q ss_pred EEEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhc
Q 002898 75 GLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDE 141 (869)
Q Consensus 75 ~~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDe 141 (869)
+...... .+...-.++|++||++.+ .+.|+. .++ ++.++||||||.+-+|.
T Consensus 142 g~~~~~~---~~~~~~~~~Ivv~Tpg~l-~~~l~~---------~l~---~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 142 GYSVRFE---SILPRPHASIMFCTVGVL-LRKLEA---------GIR---GISHVIVDEIHERDINT 192 (235)
T ss_dssp EEEETTE---EECCCSSSEEEEEEHHHH-HHHHHH---------CCT---TCCEEEECCTTSCCHHH
T ss_pred EEeechh---hccCCCCCeEEEECHHHH-HHHHHh---------hhc---CCcEEEEECCccCCcch
Confidence 7543221 111113478999999876 333432 134 89999999999863343
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.81 E-value=1.6e-08 Score=107.85 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=73.1
Q ss_pred eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHC-CCCeEEeecCCcchhhHHHHHH-HcCCCcc-EEEE
Q 002898 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQ-GIPHNVLNARPKYAAREAETVA-QAGRKYA-ITIS 409 (869)
Q Consensus 333 ~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~-gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~-VTIA 409 (869)
.....|+.++.+.+.+..+.|.+|||||.+....+.|...|... |+++..+++.+...+|++.+-. +.|.... +.|+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34578999998888887788999999999999999999999885 9999999998666667655544 5563444 7899
Q ss_pred cCCCcCCccee
Q 002898 410 TNMAGRGTDII 420 (869)
Q Consensus 410 TnmAGRGTDIk 420 (869)
|+.+|+|+|+.
T Consensus 172 t~~~g~Glnl~ 182 (271)
T 1z5z_A 172 VKAGGFGINLT 182 (271)
T ss_dssp CCTTCCCCCCT
T ss_pred hhhhcCCcCcc
Confidence 99999999984
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.76 E-value=3.2e-08 Score=103.01 Aligned_cols=110 Identities=21% Similarity=0.086 Sum_probs=85.1
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCe-EEEEc
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLS-VGLIQ 78 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLs-v~~i~ 78 (869)
.|++.|..+...+.+++ |+.+.||.|||+++..++.. .+..|.|++|+..|+.+-.+.+.. +|++ ++.+.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~----~~~~~v~~~~ 165 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGI----FGEEYVGEFS 165 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGG----GCGGGEEEES
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHh----CCCCeEEEEe
Confidence 57899999999887765 89999999999998887752 288999999999999876665554 5899 88888
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
++.. ..++|+++|...+ ...+. .... .++++||||+|.+.
T Consensus 166 g~~~-------~~~~i~v~T~~~l-----~~~~~-----~~~~---~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 166 GRIK-------ELKPLTVSTYDSA-----YVNAE-----KLGN---RFMLLIFDEVHHLP 205 (237)
T ss_dssp SSCB-------CCCSEEEEEHHHH-----HHTHH-----HHTT---TCSEEEEECSSCCC
T ss_pred CCCC-------CcCCEEEEeHHHH-----HhhHH-----Hhcc---cCCEEEEECCccCC
Confidence 7653 3679999997543 22211 1223 68999999999973
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.79 E-value=4.4e-05 Score=90.34 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=63.9
Q ss_pred CCchhhHHHHH----HHhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 2 RHFDVQIIGGA----VLHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 2 rp~dvQl~g~~----~L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
+|+|-|.--+- ++.+|+ ++|+.||.|||+++++|+...+. .|.+|.|+|++..|+.|-.+++..+-...++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 57888866554 456676 99999999999999999974433 478999999999999999999999988889998
Q ss_pred EEEcC
Q 002898 75 GLIQR 79 (869)
Q Consensus 75 ~~i~~ 79 (869)
..+.|
T Consensus 83 ~~l~g 87 (620)
T 4a15_A 83 IPMQG 87 (620)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 87665
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.00 E-value=0.0007 Score=79.88 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=56.4
Q ss_pred chhhHHHHHHHhCCC--eEEecCCCcHH--HHHHHHHHHHHH---cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 4 FDVQIIGGAVLHDGS--IAEMKTGEGKT--LVSTLAAYLNAL---TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKT--Lva~lpa~l~AL---~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.+.|..++...+.++ ++.-.+|+||| ++++++++ ..+ .|..|.+++||..+|.|-.+.++.....+|++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l-~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL-IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH-HHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-HHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 367999998887777 78889999999 44555554 333 456899999999999999999998888888763
No 95
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.97 E-value=0.43 Score=57.18 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=68.0
Q ss_pred chhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHH-HHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEc
Q 002898 4 FDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAY-LNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQ 78 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~-l~AL~G---~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~ 78 (869)
-|-|.-++-. .+|. ++...-|+|||.+.+--+. +..=.| ..+.+||.|.-.|..-.+.+..+ +|-.
T Consensus 13 n~~Q~~av~~-~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~---l~~~----- 83 (724)
T 1pjr_A 13 NKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL---LGGA----- 83 (724)
T ss_dssp CHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH---HGGG-----
T ss_pred CHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH---hccc-----
Confidence 4566665543 3566 8899999999988765443 322123 57999999998776544444433 2221
Q ss_pred CCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 79 RGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 79 ~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
...+.++|...|+...||..... ... +.+|-|+|+.|..
T Consensus 84 ------------~~~~~v~Tfhs~~~~ilr~~~~~----~g~----~~~f~i~d~~d~~ 122 (724)
T 1pjr_A 84 ------------AEDVWISTFHSMCVRILRRDIDR----IGI----NRNFSILDPTDQL 122 (724)
T ss_dssp ------------GTTSEEEEHHHHHHHHHHHHGGG----GTC----CTTCEECCHHHHH
T ss_pred ------------ccCcEEeeHHHHHHHHHHHHHHH----hCC----CCCCEECCHHHHH
Confidence 12478899999999999875422 111 4567899998863
No 96
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.80 E-value=0.12 Score=61.14 Aligned_cols=109 Identities=26% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCCchhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHH-HHHHHcC---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 1 MRHFDVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAA-YLNALTG---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 1 ~rp~dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa-~l~AL~G---~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
|...+-|.-++-.. +|. ++...-|+|||.+.+--+ ++..-.| ..+.+||.|.-.|..-.+.+.. .+|-.
T Consensus 1 ~~L~~~Q~~av~~~-~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~---~l~~~-- 74 (673)
T 1uaa_A 1 MRLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ---TLGRK-- 74 (673)
T ss_dssp -CCCHHHHHHHHCC-SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH---HSCTT--
T ss_pred CCCCHHHHHHHhCC-CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH---HcCcc--
Confidence 45567777666533 555 788999999998766443 3322123 6899999999988855554443 33321
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 76 ~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
. ...+.++|...|+...|+..... ... +.++-|+|+.|..
T Consensus 75 ----~----------~~~~~v~Tfhs~~~~il~~~~~~----~g~----~~~~~i~d~~~~~ 114 (673)
T 1uaa_A 75 ----E----------ARGLMISTFHTLGLDIIKREYAA----LGM----KANFSLFDDTDQL 114 (673)
T ss_dssp ----T----------TTTSEEEEHHHHHHHHHHHHHHH----TTC----CCCCCEECHHHHH
T ss_pred ----c----------ccCCEEEeHHHHHHHHHHHHHHH----hCC----CCCCEEeCHHHHH
Confidence 0 12588899999999999875321 111 3456788988764
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.55 E-value=2.1 Score=49.90 Aligned_cols=104 Identities=20% Similarity=0.150 Sum_probs=68.5
Q ss_pred hhhHHHHHHHhCCC-eEEecCCCcHHHHHHHHHHHHHHc-C---CcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcC
Q 002898 5 DVQIIGGAVLHDGS-IAEMKTGEGKTLVSTLAAYLNALT-G---EGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQR 79 (869)
Q Consensus 5 dvQl~g~~~L~~G~-IaEm~TGEGKTLva~lpa~l~AL~-G---~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~ 79 (869)
+-|.-++-. .+|. ++...-|+|||.+.+--+.-..-. | ..+.++|+|.-.|..-.+.+..+. |-.
T Consensus 12 ~~Q~~av~~-~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~---~~~------ 81 (647)
T 3lfu_A 12 DKQREAVAA-PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM---GTS------ 81 (647)
T ss_dssp HHHHHHHTC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH---CSC------
T ss_pred HHHHHHHhC-CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh---ccc------
Confidence 456555542 2455 889999999998766544322223 2 589999999999986666655443 321
Q ss_pred CCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 80 GMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 80 ~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
...+.++|...|+...|+...... . . +.++-|+|+.|..
T Consensus 82 -----------~~~~~v~Tfhs~~~~il~~~~~~~----~-~---~~~~~i~~~~~~~ 120 (647)
T 3lfu_A 82 -----------QGGMWVGTFHGLAHRLLRAHHMDA----N-L---PQDFQILDSEDQL 120 (647)
T ss_dssp -----------CTTCEEEEHHHHHHHHHHHTTGGG----T-C---CTTCEEECHHHHH
T ss_pred -----------cCCcEEEcHHHHHHHHHHHHHHHh----C-C---CCCCEEeCHHHHH
Confidence 135888999999998887653211 1 1 3457788988764
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.97 E-value=0.21 Score=58.95 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=42.4
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHH-HHHHcCCcEEEEecCHHHHHHHHHHHH
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAY-LNALTGEGVHVVTVNDYLAQRDAEWME 64 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~-l~AL~G~~V~VvT~ndyLA~RDae~~~ 64 (869)
+-|..++-..+.+. +++-..|+|||.+.+-.+. +.+..+..|.|+++|..-|.+-.+.+.
T Consensus 183 ~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 183 HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 45777776655544 7888899999976544333 222267899999999988877666654
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.02 E-value=0.28 Score=57.92 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=40.6
Q ss_pred hhhHHHHHHHh-CCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHH
Q 002898 5 DVQIIGGAVLH-DGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (869)
Q Consensus 5 dvQl~g~~~L~-~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~ 63 (869)
+-|..|+...+ ... |++=.-|+|||-|.+-.++...-.|..|.|+|+|..=+..-.+.+
T Consensus 192 ~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 192 TSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHH
Confidence 45777777544 443 777779999998755444434457899999999977665544444
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.39 Score=58.50 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=45.4
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHH-HHHHHcCCcEEEEecCHHHHHHHHHHHHH
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWMER 65 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa-~l~AL~G~~V~VvT~ndyLA~RDae~~~~ 65 (869)
+-|..++-..+.+. +++-..|+|||.+.+-.+ .+....+..|.|+|+|..-|.+-.+.+..
T Consensus 363 ~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 363 SSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp HHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 56888777766655 889999999997654333 33334789999999999888877776654
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.17 E-value=0.36 Score=58.73 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=42.6
Q ss_pred hhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHH-HHHHHcCCcEEEEecCHHHHHHHHHHHH
Q 002898 5 DVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAA-YLNALTGEGVHVVTVNDYLAQRDAEWME 64 (869)
Q Consensus 5 dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa-~l~AL~G~~V~VvT~ndyLA~RDae~~~ 64 (869)
+-|..++...+.+. +++-..|+|||.+.+-.+ .+.+..|..|.|+++|.--|.+-.+.+.
T Consensus 359 ~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 359 HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp HHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 45777777655554 788889999997644333 2222357899999999988877666654
No 102
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.78 E-value=0.26 Score=49.60 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
.|.|||..++-.+.-..-.|+.|.|++|.
T Consensus 17 mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 17 MYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 47799977776665344589999999976
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.38 E-value=1.2 Score=51.98 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=50.3
Q ss_pred CCchhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~--G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
+++|-|.--.-.+...+ ++.+.-|.|||.+++..+...++. |..|.++.++...|+.-.+.+.++++.++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 45667754443444444 899999999997654444335554 34799999999999999988888887664
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=88.70 E-value=1.8 Score=48.30 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=49.2
Q ss_pred CCchhhHHHHHHHhCC--CeEEecCCCcHHHHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHHHHHHHhhhcC
Q 002898 2 RHFDVQIIGGAVLHDG--SIAEMKTGEGKTLVSTLAAYLNALT--GEGVHVVTVNDYLAQRDAEWMERVHRFLG 71 (869)
Q Consensus 2 rp~dvQl~g~~~L~~G--~IaEm~TGEGKTLva~lpa~l~AL~--G~~V~VvT~ndyLA~RDae~~~~ly~~LG 71 (869)
.++|-|.--.-.+... .++++.-+-|||.+++..+...++. |..|.++.++..-|+.-.+.+.++++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 3456664433333322 3899999999997655544444554 45799999999999988888888887654
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.98 E-value=0.4 Score=47.59 Aligned_cols=30 Identities=20% Similarity=0.022 Sum_probs=22.1
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
..|.|||..+.-.+.-....|+.|.++++.
T Consensus 11 ~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 348899987755554334578899999987
No 106
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=86.09 E-value=1.1 Score=52.39 Aligned_cols=60 Identities=20% Similarity=0.074 Sum_probs=44.1
Q ss_pred chhhHHHHHHHhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHH
Q 002898 4 FDVQIIGGAVLHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~ 63 (869)
-+-|..++-.+..+. ++.=.-|+|||.++.-.+....-.|..|.+++||.-.|.+-.+..
T Consensus 191 ~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 191 SEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 357887777766655 677789999997644444334457899999999999998766543
No 107
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=84.72 E-value=6.1 Score=40.06 Aligned_cols=36 Identities=31% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCC-eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 16 DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 16 ~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
+|. ++--.+|-|||-+|+-.+.-.+-.|.+|.|+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 454 334445666776555555445568999999954
No 108
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.30 E-value=3.4 Score=44.02 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=32.8
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
-++|+|||.++...+.+.+-.|..|.++...-+-+... +++..+.+.+|+.+.
T Consensus 105 g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-~ql~~~~~~~~l~~~ 157 (295)
T 1ls1_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-EQLRLLGEKVGVPVL 157 (295)
T ss_dssp CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-HHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-HHHHHhcccCCeEEE
Confidence 46899999766666666678899999987653322111 223334455666654
No 109
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=83.14 E-value=2.7 Score=47.53 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=35.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
=.+|+|||.++.-.+...+-.|+.|.+++..-|=+. ..+++..+....|+.+..
T Consensus 104 G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~-a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 104 GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA-AYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHH-HHHHHHHHHHTTTCCEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchh-HHHHHHHHHHhcCCceee
Confidence 358999997655555555778999999886544221 134555566677776553
No 110
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.48 E-value=2.7 Score=47.77 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=34.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.+|+|||.+++-.+...+-.|+.|.+++.-.|=+. -.+++....+..|+.+..
T Consensus 108 ~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a-a~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG-AYHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH-HHHHHHHHHGGGTCEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh-HHHHHHHHHHhcCCcEEe
Confidence 48999997655444445668999999886544221 245566666777887653
No 111
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=82.00 E-value=2.1 Score=50.79 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=46.5
Q ss_pred CCchhhHHHHHHH----hCCC---eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhh
Q 002898 2 RHFDVQIIGGAVL----HDGS---IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHR 68 (869)
Q Consensus 2 rp~dvQl~g~~~L----~~G~---IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~ 68 (869)
.|..-|.-++-.| .+|. +..-.||+|||++++-.+ ..+ ++++.|||+|..+|.+-++++..|+.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~--~~~-~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI--KEV-NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH--HHH-CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH--HHh-CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 4666776554433 3452 567889999998765332 233 67899999999999999999998863
No 112
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.93 E-value=3.1 Score=44.72 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=32.6
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSV 74 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv 74 (869)
.+|+|||.++...+.+.+-.|+.|.++....+=+. -.+++....+.+|+.+
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-AIEQLKIWGERVGATV 162 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-HHHHHHHHHHHHTCEE
T ss_pred CCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-HHHHHHHHHHHcCCcE
Confidence 48999997766666656778999998876543111 1233444455667765
No 113
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=79.94 E-value=5.1 Score=50.97 Aligned_cols=123 Identities=16% Similarity=0.096 Sum_probs=70.5
Q ss_pred CchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCC------cEEEEecCHHHHHHHHHHHHHHhh-hcCCeEE
Q 002898 3 HFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGE------GVHVVTVNDYLAQRDAEWMERVHR-FLGLSVG 75 (869)
Q Consensus 3 p~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~------~V~VvT~ndyLA~RDae~~~~ly~-~LGLsv~ 75 (869)
..+-|..++-.-...-++...-|+|||-|.+--+.-....|. .+.|+|.|...|..-.+.+..... .++-
T Consensus 11 ~t~eQ~~~i~~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~--- 87 (1232)
T 3u4q_A 11 WTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ--- 87 (1232)
T ss_dssp CCHHHHHHHHCCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc---
Confidence 356677666544223389999999999987766543334443 789999996666544444443221 1111
Q ss_pred EEcCCCCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 76 LIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 76 ~i~~~~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.++...-.++..--..+..+|...|+...|+..... ... +.+|-|+||.+.-+
T Consensus 88 --~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~----~~~----~~~f~~~d~~~~~~ 140 (1232)
T 3u4q_A 88 --RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYL----IDL----DPGFRIADQTEGEL 140 (1232)
T ss_dssp --STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGG----TTC----CTTCEECCHHHHHH
T ss_pred --CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHh----cCC----CCCCeeCCHHHHHH
Confidence 111111112222234567799999999988865432 111 22344888876443
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=78.49 E-value=6.3 Score=44.28 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=36.2
Q ss_pred hhhHHHHHHHh------CCC-eEEecCCCcHHHHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHH
Q 002898 5 DVQIIGGAVLH------DGS-IAEMKTGEGKTLVSTLAAYLNALTGE-GVHVVTVNDYLAQRDAE 61 (869)
Q Consensus 5 dvQl~g~~~L~------~G~-IaEm~TGEGKTLva~lpa~l~AL~G~-~V~VvT~ndyLA~RDae 61 (869)
+-|..+.-.+. +|. ++.-..|+|||.++...+....-.|. .|.++|+|.-.|+.-.+
T Consensus 28 ~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 35666665442 223 88889999999654433322223454 89999999887765443
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=77.35 E-value=1.3 Score=42.29 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.6
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
..+++||||++++
T Consensus 83 ~~~lLilDE~~~~ 95 (149)
T 2kjq_A 83 EAEYLAVDQVEKL 95 (149)
T ss_dssp GCSEEEEESTTCC
T ss_pred CCCEEEEeCcccc
Confidence 4678999999874
No 116
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=77.08 E-value=1.2 Score=45.82 Aligned_cols=30 Identities=13% Similarity=-0.188 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 24 TGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 24 TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+|.|||..+.-.+.-.+-.|+.|.++++.-
T Consensus 21 mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 588999877666654445788999997653
No 117
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=76.51 E-value=2.1 Score=46.69 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=27.6
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+.--+-|+|||.+++-.|+..|-.|++|.+|...
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4455789999987776666678899999999987
No 118
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=74.76 E-value=2.8 Score=41.66 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=24.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|+--++|+|||.+++-.|+..|-.|++|.++
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4556799999987666666677889999875
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=69.23 E-value=2.9 Score=43.17 Aligned_cols=53 Identities=21% Similarity=0.108 Sum_probs=27.7
Q ss_pred EEecCC---CcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 20 AEMKTG---EGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 20 aEm~TG---EGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
.++-|| .|||..++-.+.-....|+.|.|++|.- -.|..+ ..+...+|++.-+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~--D~R~~~--~~I~Sr~G~~~~a 85 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI--DDRYHK--EKVVSHNGNAIEA 85 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC---------------CBTTBCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc--CCcchh--hhHHHhcCCceee
Confidence 444465 6999655545543445689999999843 133222 2466667766543
No 120
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=68.03 E-value=4.1 Score=41.94 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=26.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
|+--+.|+|||.+++-.|+..|..|+.|.+|=...
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44568999999877666666778899999987543
No 121
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=67.86 E-value=3.9 Score=44.09 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=28.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+.--+.|+|||.+++..|...|-.|++|.+|....
T Consensus 23 v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 23 FVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 55668999999877666666788899999998874
No 122
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.43 E-value=15 Score=41.32 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=33.1
Q ss_pred ecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 22 MKTGEGKTLVSTLAAYLNALT-GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~-G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
-++|+|||.+++-.|+..+.. |+.|.++....+-+.- .+++.......|+.+-.
T Consensus 107 G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a-~~ql~~~~~~~~l~v~~ 161 (433)
T 2xxa_A 107 GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA-IKQLETLAEQVGVDFFP 161 (433)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH-HHHHHHHHHHHTCEECC
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH-HHHHHhhcccCCeeEEe
Confidence 468999997655555545777 9999999887542211 12233334456776543
No 123
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=67.03 E-value=4.5 Score=40.37 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=25.4
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+-.+.|+|||.+++..|...|..|++|.+|-.+
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 345789999987666666667889999998654
No 124
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=66.60 E-value=13 Score=41.85 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.7
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
-.+|+|||.++...+...+-.|+.|.++...-
T Consensus 105 G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 36899999776666666677899999988653
No 125
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.02 E-value=13 Score=40.01 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=23.6
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
.+|+|||.++...+...+-.|+.|.++...-
T Consensus 113 ~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4999999766665555677899999987653
No 126
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=65.21 E-value=5.5 Score=42.36 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=25.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|.-.+.|+|||.+++-.|...|..|++|.+|-.+
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4445679999987666666678899999998653
No 127
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=65.03 E-value=4.8 Score=39.06 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=25.3
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
-+-|+|||.+++-.|...|..|+.|.+|-.+
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4689999987666666678899999999876
No 128
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=64.86 E-value=6 Score=40.30 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=25.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
|+-.+.|.|||.+++-.|+..|..|+.|.+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVDA 39 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 345689999998766666666788999999854
No 129
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=64.58 E-value=6.9 Score=41.95 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=27.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+.--+.|+|||.+++-.|+..|-.|++|.+|....
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 55568999999876666666788899999999864
No 130
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=64.53 E-value=5.3 Score=40.37 Aligned_cols=33 Identities=30% Similarity=0.203 Sum_probs=25.5
Q ss_pred EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 20 AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 20 aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+-.+.|.|||.+++-.|...|-.|++|.+|=.+
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 345799999987666666677889999988654
No 131
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=63.66 E-value=13 Score=39.51 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=25.2
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
=.+|+|||.++...+...+..|+.|.++....+
T Consensus 105 G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 105 GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 368999987666666556788999999887643
No 132
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=63.35 E-value=5.6 Score=41.67 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=24.7
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
-.+.|+|||.+++-.|...|..|++|.+|-.+
T Consensus 89 s~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 89 SEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34679999987666666678899999998554
No 133
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=62.64 E-value=5.2 Score=42.19 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=11.8
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||+|.+
T Consensus 105 ~~~vliiDEi~~l 117 (324)
T 3u61_B 105 RQKVIVIDEFDRS 117 (324)
T ss_dssp CEEEEEEESCCCG
T ss_pred CCeEEEEECCccc
Confidence 6789999999997
No 134
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=61.62 E-value=22 Score=34.17 Aligned_cols=62 Identities=26% Similarity=0.174 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 34 lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
|..++....+.++.|.|++..-+..-++. +...|+.+..+.+++++.+|.... ..+|+.+|.
T Consensus 22 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~----L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 22 LFDLLDVLEFNQVVIFVKSVQRCIALAQL----LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp HHHHHHHSCCSSEEEECSSHHHHHHHHHH----HHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred HHHHHHhCCCCcEEEEECCHHHHHHHHHH----HHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 33445667788999999998776655544 445699999999999998887543 357888885
No 135
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=61.61 E-value=24 Score=33.32 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 33 ~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
+|.-++....+.++.|.|++..-+..-++. +...|+++..+.+++++.+|.... ..+|+.+|.
T Consensus 25 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~----L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 25 LLKDVLMTENPDSCIIFCRTKEHVNQLTDE----LDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp HHHHHHHHHCCSSEEEECSSHHHHHHHHHH----HHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred HHHHHHHhcCCCcEEEEECCHHHHHHHHHH----HHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 334445667788999999998766655544 455699999999999988887543 357888884
No 136
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=61.12 E-value=6.2 Score=39.50 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=26.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~nd 53 (869)
+.-.+-|+|||.+++-.|...|.. |++|.+|=.+.
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 445678999998777666656777 99999886643
No 137
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=61.10 E-value=23 Score=33.47 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 34 lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
|..++....+.++.|.+++..-+..-++.+ ...|+.+..+.+++++.+|.... ..+|+.+|.
T Consensus 21 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 21 LTDLYDSISVTQAVIFCNTRRKVEELTTKL----RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp HHHHHHHTTCSCEEEEESSHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHH----HHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 334456677889999999987776555544 45699999999999988887543 357888884
No 138
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=60.93 E-value=6.2 Score=41.04 Aligned_cols=30 Identities=27% Similarity=0.187 Sum_probs=23.5
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
-+-|.|||.+++-.|+..|..|++|.+|=.
T Consensus 9 ~KGGvGKTT~a~nLA~~La~~G~rVlliD~ 38 (289)
T 2afh_E 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGC 38 (289)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCcCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 388999998776666667788999988743
No 139
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=60.33 E-value=7.2 Score=41.30 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=27.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|.-.+.|+|||.+++-.|...|..|++|.+|-..
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 4555789999988777776678899999998664
No 140
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=60.26 E-value=8.5 Score=41.83 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=28.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+.--+.|+|||.+++-.|...|-.|++|.+|....
T Consensus 30 v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 30 MFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 55668999999876666666788899999999764
No 141
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=59.68 E-value=5.1 Score=41.02 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=25.9
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
-.+.|+|||.+++..|...|..|++|.+|=...
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 357899999876666666788899999987653
No 142
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=59.36 E-value=6.6 Score=40.13 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=23.7
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
-+-|.|||.+++-.|+..|..|++|.+|=.
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~G~~VlliD~ 37 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHCCCcEEEEcC
Confidence 378999998777666667888999988744
No 143
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=58.97 E-value=6.7 Score=40.97 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=25.2
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
-.+.|.|||.+++-.|...|..|+.|.+|=...
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 457899999876666666778899998875543
No 144
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=58.89 E-value=19 Score=34.52 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 34 lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
|.-++..+.+.++.|.|++..-|..-++. +...|+.+..+.+++++.+|.... ..+|+.+|.
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~----L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVE----MIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHH----HHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHH----HHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 33444556678899999998877665554 455799999999999999887543 358888885
No 145
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=58.38 E-value=21 Score=41.08 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=31.1
Q ss_pred ecCCCcHHHH-HHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 22 MKTGEGKTLV-STLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 22 m~TGEGKTLv-a~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
=.+|+|||.+ ..|+.+ .+-.|+.|.+|+...|=+ ...+|+...-...|+.+.
T Consensus 108 G~~GvGKTTl~~kLA~~-l~~~G~kVllVd~D~~r~-aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 108 GLQGSGKTTTCSKLAYY-YQRKGWKTCLICADTFRA-GAFDQLKQNATKARIPFY 160 (504)
T ss_dssp CSTTSSHHHHHHHHHHH-HHHTTCCEEEEEECCSSS-HHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHHH-HHhCCCeEEEEeccccch-hHHHHHHHHhhccCceEE
Confidence 3589999865 555544 456799999998743211 112344444455566644
No 146
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=57.56 E-value=29 Score=30.39 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCcEEEEec--chhhHHHHHHHHHHCCCCeEEeecC-Cc-chhhHHHHHHHcC
Q 002898 342 ARQEVESMFRLGRPVLVGST--SVENSEYLSDLLKQQGIPHNVLNAR-PK-YAAREAETVAQAG 401 (869)
Q Consensus 342 ii~ei~~~~~~grPVLV~t~--Si~~SE~ls~~L~~~gi~~~vLna~-~~-~~~~Ea~Iia~AG 401 (869)
|.+-|+.+..+|.|..||.+ |.+++..+...-++.|+...||... |+ -.++-.+..+.||
T Consensus 40 irdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflktag 103 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhcc
Confidence 45556677789999999986 5677888999999999999999874 11 1223345666777
No 147
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=57.51 E-value=8.7 Score=40.30 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=25.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|+ -+-|+|||.+++-.|+..|-.|++|.+|=..
T Consensus 46 v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 46 VY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp EE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred EE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56 6899999987766666677889999988554
No 148
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=57.17 E-value=32 Score=34.23 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 37 YLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 37 ~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
++....+..+.|.|++..-+. ++...+...|+.+..+.+++++.+|.... ..+|+++|+
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~----~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 25 LLYVASPDRAMVFTRTKAETE----EIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp HHHHHCCSCEEEECSSHHHHH----HHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHhCCCCeEEEEeCCHHHHH----HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 345567888999999866554 44444455689999999999988876544 357888886
No 149
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=57.11 E-value=9.5 Score=39.70 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=25.2
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
.+-|.|||.+++-.|+..|..|++|.+|=...
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~ 75 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 36799999877666666788999999886654
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=56.96 E-value=34 Score=36.46 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=11.8
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||||.|
T Consensus 108 ~~kvviIdead~l 120 (334)
T 1a5t_A 108 GAKVVWVTDAALL 120 (334)
T ss_dssp SCEEEEESCGGGB
T ss_pred CcEEEEECchhhc
Confidence 6789999999997
No 151
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=56.66 E-value=6.4 Score=40.34 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=26.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
|+-.+-|+|||.+++-.|+..| .|++|.+|-.+.
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 4456899999987666666667 899999987764
No 152
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=56.63 E-value=5.2 Score=39.89 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=24.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+-|+|||.+++-.|...|-.|++|.+|--..
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 7899999877766766788899999887653
No 153
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=55.06 E-value=58 Score=31.43 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=56.3
Q ss_pred eChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCC
Q 002898 333 ATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNM 412 (869)
Q Consensus 333 ~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnm 412 (869)
.+..+....|++.|.+......-+-|.|++-..++.+.+.|...|+++.+++... . ..++.|+|.|=-
T Consensus 41 ~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~--~----------~~~~~v~v~t~~ 108 (174)
T 3dmn_A 41 PNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTEN--Q----------RLAPGVIVVPSF 108 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGG
T ss_pred CCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeecccc--c----------ccCCCeEEEEcc
Confidence 4566667778888877222335599999999999999999999999998887631 1 124679999977
Q ss_pred CcCCccee
Q 002898 413 AGRGTDII 420 (869)
Q Consensus 413 AGRGTDIk 420 (869)
...|.-+.
T Consensus 109 ~~KGlEf~ 116 (174)
T 3dmn_A 109 LAKGLEFD 116 (174)
T ss_dssp GCTTCCEE
T ss_pred ccCCcCCC
Confidence 77776553
No 154
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=54.14 E-value=11 Score=37.60 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=25.4
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
++-.+-|.|||.+++-.|...|..| +|.+|-...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 3456789999987666666677889 999876543
No 155
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=53.44 E-value=12 Score=43.38 Aligned_cols=35 Identities=31% Similarity=0.277 Sum_probs=28.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
+.--+.|+|||.+++-.|+..|-.|++|.+|....
T Consensus 12 ~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 12 FFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45567999999877777766788899999998874
No 156
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=52.64 E-value=8.4 Score=40.04 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=12.7
Q ss_pred eEEecCCCcHHHHHHHH
Q 002898 19 IAEMKTGEGKTLVSTLA 35 (869)
Q Consensus 19 IaEm~TGEGKTLva~lp 35 (869)
+..=.+|.|||.++-..
T Consensus 71 ll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKM 87 (309)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 66778999999765433
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.85 E-value=11 Score=40.35 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=10.0
Q ss_pred EEEeechhhhh
Q 002898 128 FAIVDEVDSVL 138 (869)
Q Consensus 128 ~aIVDEvDsiL 138 (869)
+++|||+|.+.
T Consensus 136 vlilDEi~~l~ 146 (384)
T 2qby_B 136 IIYLDEVDTLV 146 (384)
T ss_dssp EEEEETTHHHH
T ss_pred EEEEECHHHhc
Confidence 99999999974
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.78 E-value=29 Score=36.56 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.8
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
...++||||+|.+.
T Consensus 128 ~~~vlilDE~~~l~ 141 (386)
T 2qby_A 128 SQVVIVLDEIDAFV 141 (386)
T ss_dssp SCEEEEEETHHHHH
T ss_pred CeEEEEEcChhhhh
Confidence 36789999999985
No 159
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=51.61 E-value=18 Score=38.27 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.8
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
+..+++|||+|.+.
T Consensus 130 ~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 130 GIYIIVLDEIDFLP 143 (387)
T ss_dssp SEEEEEEETTTHHH
T ss_pred CeEEEEEccHhhhc
Confidence 46699999999975
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=51.51 E-value=11 Score=36.71 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=24.7
Q ss_pred hCCCe--EEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 15 HDGSI--AEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 15 ~~G~I--aEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
..|.+ .--.+|.|||..+...+. ..|.+|..++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 35663 445799999976655554 5678888887654
No 161
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=51.22 E-value=15 Score=42.02 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=41.8
Q ss_pred cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCcCCcce
Q 002898 352 LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419 (869)
Q Consensus 352 ~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAGRGTDI 419 (869)
.|..|+|.|.|....+.|.+.|...||+...... ..+ + .+|.|.|+.--..+|--.
T Consensus 381 ~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~-----~~~--~-----~~g~v~i~~g~L~~GF~~ 436 (483)
T 3hjh_A 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMR-----LDE--A-----SDRGRYLMIGAAEHGFVD 436 (483)
T ss_dssp CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC-----GGG--C-----CTTCEEEEESCCCSCEEE
T ss_pred CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCc-----hhh--c-----CCCcEEEEEcccccCccc
Confidence 4678999999999999999999999997654322 111 1 467888887777777643
No 162
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=51.14 E-value=14 Score=40.36 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=27.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHH--HcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNA--LTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A--L~G~~V~VvT~n 52 (869)
+.--+.|+|||.+++-.|+..| -.|++|.+|...
T Consensus 22 v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4555889999987666666677 789999999986
No 163
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=51.03 E-value=12 Score=38.55 Aligned_cols=65 Identities=9% Similarity=0.194 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCch
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~ 102 (869)
.+|.|||.++-..+ +.+...-+.+.++.+............+-..+.
T Consensus 72 ~~GtGKT~la~~ia--~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~------------------------------- 118 (272)
T 1d2n_A 72 PPHSGKTALAAKIA--EESNFPFIKICSPDKMIGFSETAKCQAMKKIFD------------------------------- 118 (272)
T ss_dssp STTSSHHHHHHHHH--HHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCcHHHHHHHHH--HHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHH-------------------------------
Q ss_pred hhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
..... +..+++|||+|.+
T Consensus 119 --------------~~~~~---~~~vl~iDEid~l 136 (272)
T 1d2n_A 119 --------------DAYKS---QLSCVVVDDIERL 136 (272)
T ss_dssp --------------HHHTS---SEEEEEECCHHHH
T ss_pred --------------HHHhc---CCcEEEEEChhhh
No 164
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=50.17 E-value=53 Score=38.55 Aligned_cols=129 Identities=9% Similarity=-0.007 Sum_probs=64.6
Q ss_pred hcCcccccCCCcccHHHHHHHHhCCC--eEEeCCCCCccccc-----CCCeEEeC-hhHHHHHHHHHHHHHH-hcCCcEE
Q 002898 287 LYPKLSGMTGTAKTEEKEFLKMFQMP--VIEVPTNLPNIRVD-----LPIQSFAT-ARGKWEYARQEVESMF-RLGRPVL 357 (869)
Q Consensus 287 ~Y~kL~GmTGTa~te~~Ef~~iY~l~--vv~IPt~~p~~R~d-----~~d~i~~t-~~~K~~aii~ei~~~~-~~grPVL 357 (869)
......-+|||+.. -.-|.+.-|++ .+.+|+-.|..+.. ..+..|.. ..+-+.++.+.+.+.. ..+-.+|
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~l 452 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTI 452 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 44566677888875 44555666664 34566544432110 00011111 1223455666555543 2344699
Q ss_pred EEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcC--CCcCCccee
Q 002898 358 VGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN--MAGRGTDII 420 (869)
Q Consensus 358 V~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATn--mAGRGTDIk 420 (869)
|||+|-..-+.+++.|+ .+... +.-++...+++.-+-.-. ..|+|.+||- -..-|+|+.
T Consensus 453 vlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~ 513 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFP 513 (620)
T ss_dssp EEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC-------
T ss_pred EEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCC
Confidence 99999999999988876 23322 211111123332223323 4789999974 899999997
No 165
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=48.05 E-value=41 Score=35.74 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=43.7
Q ss_pred HHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 35 AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 35 pa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
.-++....+..+.|.|++..-+. .+...+...|+.+..+.+++++.+|.... ..+|+++|+
T Consensus 20 ~~ll~~~~~~~~LVF~~t~~~~~----~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 20 SDLLYVASPDRAMVFTRTKAETE----EIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp HHHHHHHCCSSEEEECSSHHHHH----HHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred HHHHHhcCCCCEEEEECCHHHHH----HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 33445566889999999866544 44445556689999999999887776544 357888886
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=47.61 E-value=12 Score=40.49 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=12.0
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
..-++++||+|.+.
T Consensus 132 ~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 132 RKTLILIQNPENLL 145 (318)
T ss_dssp CEEEEEEECCSSSC
T ss_pred CceEEEEecHHHhh
Confidence 56799999999975
No 167
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=46.37 E-value=11 Score=41.13 Aligned_cols=32 Identities=41% Similarity=0.364 Sum_probs=24.9
Q ss_pred ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 22 MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
.+=|+|||.+++-.|+..|..|++|.+|--..
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~ 40 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 46799999876666666788999999986653
No 168
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=45.06 E-value=25 Score=38.29 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=11.8
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
...+++|||+|+++
T Consensus 207 ~~~il~iDEid~l~ 220 (389)
T 3vfd_A 207 QPSIIFIDQVDSLL 220 (389)
T ss_dssp SSEEEEEETGGGGC
T ss_pred CCeEEEEECchhhc
Confidence 44699999999985
No 169
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=43.75 E-value=61 Score=34.44 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=23.3
Q ss_pred CCCe--EEecCCCcHHHHHHHHHHHHHHc------CCcEEEEecCH
Q 002898 16 DGSI--AEMKTGEGKTLVSTLAAYLNALT------GEGVHVVTVND 53 (869)
Q Consensus 16 ~G~I--aEm~TGEGKTLva~lpa~l~AL~------G~~V~VvT~nd 53 (869)
.|.+ .--.+|.|||..+.-.++-.++. |.+|..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4564 44569999997665555422333 56777776654
No 170
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=43.22 E-value=43 Score=33.64 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Q 002898 633 RQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (869)
Q Consensus 633 ~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~ 677 (869)
.+|+..|..++..+.+..+.+++...--+..|+-+|..|+.|+.+
T Consensus 3 ~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~ 47 (193)
T 3kyp_A 3 QDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQK 47 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcC
Confidence 468899999999999999999999999999999999999999965
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=43.13 E-value=19 Score=34.36 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=11.4
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..+++|||+|.+
T Consensus 102 ~~~vliiDe~~~l 114 (226)
T 2chg_A 102 PFKIIFLDEADAL 114 (226)
T ss_dssp SCEEEEEETGGGS
T ss_pred CceEEEEeChhhc
Confidence 5689999999986
No 172
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=43.00 E-value=82 Score=35.15 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=58.9
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHH-cCCcEEEEecC---HHHHHHHHHHHHHHhhhcCCeEEEE-cCCCCHHHH
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVN---DYLAQRDAEWMERVHRFLGLSVGLI-QRGMIPEER 86 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL-~G~~V~VvT~n---dyLA~RDae~~~~ly~~LGLsv~~i-~~~~~~~~r 86 (869)
+..|. +.--.+|.|||..+.-.+...+. .|..|.+++.. ..|..|-.. ..+|+....+ .+.++.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~------~~~~~~~~~l~~g~l~~~~~ 273 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLC------AEGNINAQNLRTGKLTPEDW 273 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHH------HHHTCCHHHHHTSCCCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHH------HHcCCCHHHHhcCCCCHHHH
Confidence 34666 55668999999766655554444 47789888753 234443211 1223322111 123444332
Q ss_pred Hh-------ccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 87 RS-------NYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 87 k~-------aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
.. ....++..-..+.+..+-++..+.. .+.. .++.++|||+...|.
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~----l~~~--~~~~livID~l~~~~ 326 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRR----LKQE--SGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHH----HHTT--TCCCEEEEECGGGSC
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH----HHHH--cCCCEEEEccHHHhc
Confidence 21 1123454444444445555543321 2211 168899999999875
No 173
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=42.91 E-value=20 Score=38.06 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=24.7
Q ss_pred ecCCCcHHHHHHHHHHHHHH-cCCcEEEEecCHH
Q 002898 22 MKTGEGKTLVSTLAAYLNAL-TGEGVHVVTVNDY 54 (869)
Q Consensus 22 m~TGEGKTLva~lpa~l~AL-~G~~V~VvT~ndy 54 (869)
=.+|+|||.++...+...+. .|+.|.+++...+
T Consensus 112 G~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 112 GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 35899999766666655665 7999999987654
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=42.55 E-value=27 Score=37.08 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=11.3
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||+|.+
T Consensus 125 ~~~vlilDE~~~l 137 (389)
T 1fnn_A 125 LYMFLVLDDAFNL 137 (389)
T ss_dssp CCEEEEEETGGGS
T ss_pred CeEEEEEECcccc
Confidence 4679999999996
No 175
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=42.33 E-value=41 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=30.6
Q ss_pred hcC-CcEEEEe-cchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 351 RLG-RPVLVGS-TSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 351 ~~g-rPVLV~t-~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
.+. +||+|.| .+-..|...+..|+..|+...+|+++
T Consensus 86 ~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG 123 (134)
T 3g5j_A 86 ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGG 123 (134)
T ss_dssp HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTH
T ss_pred ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCc
Confidence 445 9999999 68888999999999999977777774
No 176
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=42.14 E-value=22 Score=38.80 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=27.0
Q ss_pred eEEecCCCcHHHHHHHHHHHHH--HcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNA--LTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A--L~G~~V~VvT~n 52 (869)
+.--+-|+|||.+++-.|...| ..|++|.+|...
T Consensus 22 ~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 22 FVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4445889999987666666677 789999999986
No 177
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=40.73 E-value=73 Score=34.36 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=43.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHH---CCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQ---QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~---~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATn 411 (869)
..|..+||.+++.+-+..+.+.++. .|+++..++++....+++..+-. ..| ...|+|+|.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEECH
Confidence 5678899999999999999999988 68899999986433222222222 233 347889883
No 178
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=40.54 E-value=19 Score=38.62 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.4
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|=|-|||.+++-.++..|..|++|.+|=.-
T Consensus 56 KGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 56 KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 678999988776666678899999988654
No 179
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=40.31 E-value=67 Score=34.13 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 30 LVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 30 Lva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
....+.-++....+..+.|.|++..-|..-++. +...|+.+..+.+++++.+|.... ..+|+++|.
T Consensus 253 ~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~----L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 253 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAE----LSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp HHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHH----HHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHH----HHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 344445555677888999999998776655544 445699999999999998887654 358998885
No 180
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.68 E-value=49 Score=32.61 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=12.6
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
+.+++||||..+++
T Consensus 119 ~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 119 RYALLIVDSATALY 132 (243)
T ss_dssp CEEEEEEETSSGGG
T ss_pred CceEEEEeCchHHH
Confidence 68899999999986
No 181
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=39.02 E-value=39 Score=32.62 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHH----CCCCeEEeecCCcchhhHHHHHHHcCCCccEEEEcC
Q 002898 336 RGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQ----QGIPHNVLNARPKYAAREAETVAQAGRKYAITISTN 411 (869)
Q Consensus 336 ~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~----~gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATn 411 (869)
..++..+++.+.+..++|..|+|.|.+.+.++.|-+.|-. .-|||......+ .+++ .|.|++.
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~-----------~~~~--PV~L~~~ 88 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP-----------RGGA--PVEIAWP 88 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS-----------TTCC--SEEEECT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC-----------CCCC--CEEEeCC
Confidence 4567778889988899999999999999999999999965 358998654321 1333 5888875
Q ss_pred CC---c-CCcceecCC
Q 002898 412 MA---G-RGTDIILGG 423 (869)
Q Consensus 412 mA---G-RGTDIkLgg 423 (869)
.. + |.+=|.|+|
T Consensus 89 ~~~~~~~~~vLinL~~ 104 (150)
T 3sxu_A 89 QKRSSSRRDILISLRT 104 (150)
T ss_dssp TSCCCSCCSEEEECCS
T ss_pred CCCCCCcCCEEEECCC
Confidence 42 2 445556654
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.54 E-value=51 Score=37.52 Aligned_cols=82 Identities=24% Similarity=0.241 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCch
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~ 102 (869)
.+|.|||.++-..+-.. | +.+++.+.+++
T Consensus 85 ppGtGKTtla~~la~~l---~------------------------------------------------~~~i~in~s~~ 113 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQEL---G------------------------------------------------YDILEQNASDV 113 (516)
T ss_dssp STTSSHHHHHHHHHHHT---T------------------------------------------------CEEEEECTTSC
T ss_pred CCCCCHHHHHHHHHHHc---C------------------------------------------------CCEEEEeCCCc
Q ss_pred hhhHHHHhhccchhhhhc---------------cCCCCceEEEeechhhh-------------hhhcCCCceeecCCCCC
Q 002898 103 GFDYLRDNLAANSEQLVM---------------RWPKPFHFAIVDEVDSV-------------LIDEGRNPLLISGEASK 154 (869)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~---------------r~~R~~~~aIVDEvDsi-------------LiDea~tPLiiSg~~~~ 154 (869)
...++............. . ...++||||||.+ ++++...|+|+.+....
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNG---KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERN 190 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSST---TSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTT
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccC---CCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Q ss_pred Cccc
Q 002898 155 DVAR 158 (869)
Q Consensus 155 ~~~~ 158 (869)
...+
T Consensus 191 ~~~l 194 (516)
T 1sxj_A 191 LPKM 194 (516)
T ss_dssp SSTT
T ss_pred Cccc
No 183
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.37 E-value=15 Score=41.68 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=61.0
Q ss_pred ccccccCh--hhhHHHHh-hhCCccccCcceeeeeeehhHhhhcC-------cccccCCCcccH-HHHHHHHhCCCeEEe
Q 002898 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (869)
Q Consensus 248 ~~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~It~q~~Fr~Y~-------kL~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (869)
.|+.+|+| ||...++. +|-+. -.+.+..+|+.|. -|+|=.||.+|. ++-+..-.|.+++.|
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~--------~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIE--------LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHH--------HHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCChhHhCChHHHHHHHHHHHH--------HHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 46788988 88776553 23222 1245666776663 689999999994 566778889998876
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchh
Q 002898 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (869)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~ 364 (869)
....-.. -|..+.++ .+..+-...+...|++||...+.
T Consensus 247 ~~s~l~s-------k~~Gese~---~ir~~F~~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 247 PASGIVD-------KYIGESAR---IIREMFAYAKEHEPCIIFMDEVD 284 (437)
T ss_dssp EGGGTCC-------SSSSHHHH---HHHHHHHHHHHSCSEEEEEECCC
T ss_pred ehhhhcc-------ccchHHHH---HHHHHHHHHHhcCCceeeeeccc
Confidence 4321100 02333332 34444444566789999976554
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.97 E-value=30 Score=38.91 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=11.4
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
...+++|||+|.+
T Consensus 106 ~~~iLfIDEI~~l 118 (447)
T 3pvs_A 106 RRTILFVDEVHRF 118 (447)
T ss_dssp CCEEEEEETTTCC
T ss_pred CCcEEEEeChhhh
Confidence 5689999999986
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=36.57 E-value=27 Score=36.06 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCch
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~ 102 (869)
.+|.|||.++-..+- .+.+..++.+.+++
T Consensus 62 p~GtGKT~la~~la~---------------------------------------------------~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 62 PPGNGKTLLARAVAT---------------------------------------------------ECSATFLNISAASL 90 (297)
T ss_dssp SSSSCHHHHHHHHHH---------------------------------------------------HTTCEEEEEESTTT
T ss_pred cCCCCHHHHHHHHHH---------------------------------------------------HhCCCeEEeeHHHH
Q ss_pred hhhH---HHHhhccchhhhhccCCCCceEEEeechhhhh
Q 002898 103 GFDY---LRDNLAANSEQLVMRWPKPFHFAIVDEVDSVL 138 (869)
Q Consensus 103 ~fDy---LrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiL 138 (869)
...| -...+..-....... ...++++||+|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~---~~~vl~iDEid~l~ 126 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHM---QPSIIFIDEVDSLL 126 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHT---CSEEEEEETGGGTS
T ss_pred hhcccchHHHHHHHHHHHHHHc---CCcEEEeccHHHhc
No 186
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=36.55 E-value=20 Score=39.61 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=24.7
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
--+-|+|||.+++-.|...|-.|+.|.+|..
T Consensus 8 ~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 8 LGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp ECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 3467999998777666667889999998875
No 187
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=36.25 E-value=83 Score=33.45 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 34 lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
+..++....+.++.|.+++..-+..-++ .+..+|+.+..+.+++++.+|.... ..+|+.+|.
T Consensus 249 l~~~~~~~~~~~~lVf~~~~~~~~~l~~----~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 249 LNTLFSKLQINQAIIFCNSTNRVELLAK----KITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp HHHHHHHSCCSEEEEECSSHHHHHHHHH----HHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred HHHHHhhcCCCcEEEEEecHHHHHHHHH----HHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 3444556677899999999876655444 4445699999999999998887654 358999996
No 188
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=35.92 E-value=59 Score=31.53 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=36.2
Q ss_pred HHHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 37 YLNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 37 ~l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
++... .+..+.|.|++..-+..-++. +...|+.+..+.+++++.+|.... ..+|+.+|.
T Consensus 39 ll~~~~~~~k~lVF~~~~~~~~~l~~~----L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 39 LLNATGKDSLTLVFVETKKGADSLEDF----LYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp HHHHC-CCSCEEEEESCHHHHHHHHHH----HHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred HHHhcCCCCeEEEEECCHHHHHHHHHH----HHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 34444 477899999998776655544 445699999999999887776543 357888884
No 189
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=35.89 E-value=76 Score=33.48 Aligned_cols=62 Identities=26% Similarity=0.199 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 34 lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
+..++....+.++.|.+++..-|..-++.+ ...|+.+..+.+++++++|.... ..+|+.+|.
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLL----VEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHH----HhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 334456668889999999987776555544 44699999999999988887544 358999996
No 190
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=35.52 E-value=77 Score=33.95 Aligned_cols=102 Identities=16% Similarity=0.056 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeCh-hHHHHHHHHHHHHHHhcCCcEEE---EecchhhHHHHHHHHHHCC
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATA-RGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQG 377 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~-~~K~~aii~ei~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~g 377 (869)
+++|.+.||+..+ .+..........|.|+... ......++ ..+.+.|.+||+ ++.|.++++.+.+..++.|
T Consensus 66 ~~~~a~~~g~~~~--~~~~~ll~~~~~D~V~i~tp~~~h~~~~---~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g 140 (350)
T 3rc1_A 66 AKRFTERFGGEPV--EGYPALLERDDVDAVYVPLPAVLHAEWI---DRALRAGKHVLAEKPLTTDRPQAERLFAVARERG 140 (350)
T ss_dssp HHHHHHHHCSEEE--ESHHHHHTCTTCSEEEECCCGGGHHHHH---HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCc--CCHHHHhcCCCCCEEEECCCcHHHHHHH---HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 4556666766543 2322222223456555433 33333333 344578999999 7889999999999999999
Q ss_pred CCeEEeecCCcch--hhH-HHHHHHcCCCccEEEEc
Q 002898 378 IPHNVLNARPKYA--ARE-AETVAQAGRKYAITIST 410 (869)
Q Consensus 378 i~~~vLna~~~~~--~~E-a~Iia~AG~~g~VTIAT 410 (869)
+...+-.-. .++ -+. .+++ ++|.-|.|.-.+
T Consensus 141 ~~~~v~~~~-R~~p~~~~~k~~i-~~G~iG~i~~v~ 174 (350)
T 3rc1_A 141 LLLMENFMF-LHHPQHRQVADML-DEGVIGEIRSFA 174 (350)
T ss_dssp CCEEEECGG-GGCTHHHHHHHHH-HTTTTCSEEEEE
T ss_pred CEEEEEecc-cCCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 887653221 111 112 2333 567788776543
No 191
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=34.96 E-value=44 Score=34.54 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=27.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
++-.+.|.|||-+++-.+...+..|+.|.++....
T Consensus 10 ~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 10 FLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 57788999999876666665677899998877743
No 192
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=34.95 E-value=51 Score=28.98 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.4
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
..+.+||+|.|.+-..|...+..|+..|+. ..+|.++
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG 86 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGG 86 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCC
Confidence 356789999999999999999999999996 5567663
No 193
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=34.75 E-value=93 Score=35.59 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=69.4
Q ss_pred Hhhhc-CcccccCCCcccHHHHHHHHhCCC--eE------EeCCCCCcccc-----cCCCeEEeC-hhHHHHHHHHHHHH
Q 002898 284 LFKLY-PKLSGMTGTAKTEEKEFLKMFQMP--VI------EVPTNLPNIRV-----DLPIQSFAT-ARGKWEYARQEVES 348 (869)
Q Consensus 284 ~Fr~Y-~kL~GmTGTa~te~~Ef~~iY~l~--vv------~IPt~~p~~R~-----d~~d~i~~t-~~~K~~aii~ei~~ 348 (869)
+|... ....-+|||+.. -..|.+..|++ .. .+|+..+..+. +.|. -|.. ..+-+.++.+.+.+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~-~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTS-KYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCC-CTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCC-ccccCCHHHHHHHHHHHHH
Confidence 44555 566677888865 44566666775 21 13432211110 0110 0111 12335667777766
Q ss_pred HHh-cCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEc--CCCcCCcceec
Q 002898 349 MFR-LGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVA-QAGRKYAITIST--NMAGRGTDIIL 421 (869)
Q Consensus 349 ~~~-~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIAT--nmAGRGTDIkL 421 (869)
..+ .+-.+|||++|-...+.+++. .+.+ ++--. +... ..++.. -.-..++|.+|| .-..-|+|+.=
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~--v~~q~-~~~~-~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLP--KYVES-EDSS-VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSS--EEECC-SSCC-HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCc--EEEcC-CCCC-HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 543 344799999999998888862 3433 33221 1111 122333 112246899998 68899999983
No 194
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=34.68 E-value=27 Score=37.97 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
|.-.+-|.|||.+++-.|...|..|++|.+|-..
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3445889999987666666667789999999865
No 195
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=34.14 E-value=37 Score=34.49 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=21.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|+=-.||+|||.+++..+...+-.|..|...
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 4555799999987655554455678777654
No 196
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=33.44 E-value=78 Score=30.92 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=41.2
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 42 ~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
.+.++.|.|++..-+..-++.+ ...|+++..+.+++++.+|..+. ..+|+.+|.
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L----~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYL----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHH----HHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred CCCCEEEEECCHHHHHHHHHHH----HHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 3568999999987776555544 45699999999999998887544 357888883
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.34 E-value=28 Score=36.97 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=11.6
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||+|.+
T Consensus 110 ~~~viiiDe~~~l 122 (340)
T 1sxj_C 110 GFKLIILDEADAM 122 (340)
T ss_dssp SCEEEEETTGGGS
T ss_pred CceEEEEeCCCCC
Confidence 5789999999986
No 198
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=33.30 E-value=44 Score=34.77 Aligned_cols=47 Identities=28% Similarity=0.234 Sum_probs=23.7
Q ss_pred chhhHHHHHHHhCCC------eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 002898 4 FDVQIIGGAVLHDGS------IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVT 50 (869)
Q Consensus 4 ~dvQl~g~~~L~~G~------IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT 50 (869)
+..-+.|.+..+.|+ |+=..||.|||.+.+..+...+-.|..|...=
T Consensus 10 ~~~~~~~~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 10 HSSGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp ------------CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccchhhHHHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 444566667666654 66678999999875544443455687776653
No 199
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=33.22 E-value=77 Score=32.58 Aligned_cols=48 Identities=6% Similarity=0.196 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Q 002898 630 AIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677 (869)
Q Consensus 630 ~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~ 677 (869)
..-..|...|..++..+.+..+.+++-..--+..++-+|..|+.|+.+
T Consensus 30 ~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~ 77 (225)
T 2e50_A 30 EAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhc
Confidence 334567888999999999999999988888889999999999999965
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.58 E-value=23 Score=39.68 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=61.0
Q ss_pred cccccCh--hhhHHHHh-hhCCccccCcceeeeeeehhHhhhcC-------cccccCCCcccH-HHHHHHHhCCCeEEeC
Q 002898 249 EKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEVP 317 (869)
Q Consensus 249 ~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~It~q~~Fr~Y~-------kL~GmTGTa~te-~~Ef~~iY~l~vv~IP 317 (869)
|+.+|+| ||...++. +|-+.. -+.+..+|+.|. -|+|=.||.+|- ++-+..-.+.+++.|-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~--------Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIEL--------PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHH--------HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH--------HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 7889998 88876654 444432 244666776653 689999999994 6667778888887663
Q ss_pred CCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchh
Q 002898 318 TNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (869)
Q Consensus 318 t~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~ 364 (869)
...-. .-|..+.++ .+.++-...+...|++||..-+.
T Consensus 215 ~s~l~-------sk~vGese~---~vr~lF~~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 215 GAELV-------QKYIGEGSR---MVRELFVMAREHAPSIIFMDEID 251 (405)
T ss_dssp GGGGS-------CSSTTHHHH---HHHHHHHHHHHTCSEEEEEESSS
T ss_pred hHHhh-------ccccchHHH---HHHHHHHHHHHhCCceEeeecch
Confidence 31100 002333332 34444444556789999976444
No 201
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=32.05 E-value=1.3e+02 Score=32.38 Aligned_cols=104 Identities=8% Similarity=0.048 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeC-hhHHHHHHHHHHHHHHhcCCcEEE---EecchhhHHHHHHHHHHCC
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFAT-ARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQG 377 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t-~~~K~~aii~ei~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~g 377 (869)
++++.+.||+.+....+..........|.|+.. .......+ +..+.+.|.+||+ ++.|.++++.+.+..++.|
T Consensus 62 ~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~---~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g 138 (357)
T 3ec7_A 62 AQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHADV---AVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNG 138 (357)
T ss_dssp HHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH---HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHH---HHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhC
Confidence 455666666533333333333332334555543 33333333 3344577999999 6789999999999999999
Q ss_pred CCe-EEeecCCcchh--hH-HHHHHHcCCCccEEEEc
Q 002898 378 IPH-NVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (869)
Q Consensus 378 i~~-~vLna~~~~~~--~E-a~Iia~AG~~g~VTIAT 410 (869)
+.. .+-.-. .++. +. .+++ ++|.-|.|...+
T Consensus 139 ~~~~~v~~~~-R~~p~~~~~k~~i-~~g~iG~i~~v~ 173 (357)
T 3ec7_A 139 KRMVQIGFMR-RYDKGYVQLKNII-DSGEIGQPLMVH 173 (357)
T ss_dssp SCCEEEECGG-GGSHHHHHHHHHH-HHTTTCSEEEEE
T ss_pred CeEEEEeecc-cCCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 876 442211 1111 12 2333 567788776543
No 202
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=31.85 E-value=89 Score=35.59 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECCC
Q 002898 35 AAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNNS 100 (869)
Q Consensus 35 pa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~~ 100 (869)
..++....|..+.|.|++..-++.-++.+ ...|+++..+.+++++++|.... ..+|+++|+.
T Consensus 228 ~~~l~~~~~~~~IVf~~sr~~~e~l~~~L----~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a 295 (523)
T 1oyw_A 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARL----QSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295 (523)
T ss_dssp HHHHHHTTTCCEEEECSSHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT
T ss_pred HHHHHhcCCCcEEEEeCCHHHHHHHHHHH----HHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 33445557889999999987766555554 45699999999999998887644 3589999973
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=31.80 E-value=44 Score=37.36 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=11.9
Q ss_pred CceEEEeechhhhh
Q 002898 125 PFHFAIVDEVDSVL 138 (869)
Q Consensus 125 ~~~~aIVDEvDsiL 138 (869)
...+++|||+|.+.
T Consensus 194 ~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 194 KVDILLIDDVQFLI 207 (440)
T ss_dssp TCSEEEEECGGGGS
T ss_pred CCCEEEEeCccccc
Confidence 46799999999974
No 204
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=31.68 E-value=43 Score=29.64 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=31.4
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
.+.+||+|.|.+-..|...+..|++.|+...+|.++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG 88 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGG 88 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCc
Confidence 567899999999999999999999999966677664
No 205
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.20 E-value=28 Score=35.90 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=11.3
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||+|.+
T Consensus 107 ~~~viiiDe~~~l 119 (323)
T 1sxj_B 107 KHKIVILDEADSM 119 (323)
T ss_dssp CCEEEEEESGGGS
T ss_pred CceEEEEECcccC
Confidence 3789999999996
No 206
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=31.19 E-value=37 Score=36.11 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCeEEECCCch
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSEL 102 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI~YgT~~e~ 102 (869)
.+|.|||..+-..+ +.+.+..+..+..++.+ -.|...++-
T Consensus 53 ppGtGKT~la~ala--~~~~~~~~~~i~~~~l~--------------------------------------~~~~g~~~~ 92 (322)
T 1xwi_A 53 PPGTGKSYLAKAVA--TEANNSTFFSISSSDLV--------------------------------------SKWLGESEK 92 (322)
T ss_dssp SSSSCHHHHHHHHH--HHTTSCEEEEEECCSSC--------------------------------------CSSCCSCHH
T ss_pred CCCccHHHHHHHHH--HHcCCCcEEEEEhHHHH--------------------------------------hhhhhHHHH
Q ss_pred hhhHHHHhhccchhhhhccCCCCceEEEeechhhh
Q 002898 103 GFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSV 137 (869)
Q Consensus 103 ~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsi 137 (869)
....+.+..... ...+++|||+|++
T Consensus 93 ~~~~lf~~a~~~----------~~~vl~iDEid~l 117 (322)
T 1xwi_A 93 LVKNLFQLAREN----------KPSIIFIDEIDSL 117 (322)
T ss_dssp HHHHHHHHHHHT----------SSEEEEEETTTGG
T ss_pred HHHHHHHHHHhc----------CCcEEEeecHHHh
No 207
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=30.84 E-value=1.2e+02 Score=32.02 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeC-hhHHHHHHHHHHHHHHhcCCcEEE---EecchhhHHHHHHHHHHCC
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFAT-ARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQG 377 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t-~~~K~~aii~ei~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~g 377 (869)
.+++.+.|++.+....+..........|.|+.. .......++ ..+.+.|.+||+ ++.|.++++.+.+..++.|
T Consensus 41 ~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~---~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g 117 (344)
T 3mz0_A 41 AQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESSV---LKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVG 117 (344)
T ss_dssp HHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHH---HHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHHH---HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHC
Confidence 455666676543333333333333335555543 233333333 344578999999 6779999999999999999
Q ss_pred CCe-EEeecCCcchh--hH-HHHHHHcCCCccEEEEc
Q 002898 378 IPH-NVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (869)
Q Consensus 378 i~~-~vLna~~~~~~--~E-a~Iia~AG~~g~VTIAT 410 (869)
... .+-.-. .++. +. .+++ ++|.-|.|...+
T Consensus 118 ~~~~~v~~~~-r~~p~~~~~k~~i-~~g~iG~i~~v~ 152 (344)
T 3mz0_A 118 KRLVQVGFMR-RYDSGYVQLKEAL-DNHVIGEPLMIH 152 (344)
T ss_dssp SCCEEECCGG-GGSHHHHHHHHHH-HTTTTSSEEEEE
T ss_pred CEEEEEeccc-ccCHHHHHHHHHH-HcCCCCCcEEEE
Confidence 876 442211 1211 12 2233 568788776543
No 208
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=30.55 E-value=40 Score=35.77 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=23.3
Q ss_pred eEEecCCCcHHHHHHHHHHHHH-HcCCcEEEEecCH
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNA-LTGEGVHVVTVND 53 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A-L~G~~V~VvT~nd 53 (869)
+.-=.||.|||..+...+.... -.|..|..++.++
T Consensus 156 ll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 156 YLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 6667899999976544333233 4677888777654
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=30.45 E-value=41 Score=32.46 Aligned_cols=34 Identities=24% Similarity=0.067 Sum_probs=20.5
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+..=.+|.|||..+-..+....-.|..|..++..
T Consensus 58 ~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 5566799999976543332223346666666654
No 210
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=30.21 E-value=15 Score=26.01 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhhhhcc
Q 002898 848 DHLINMNRLSSAVYHNIYF 866 (869)
Q Consensus 848 eHLd~Md~LRegIgLR~Y~ 866 (869)
+|-.-|+++|+||-||+--
T Consensus 5 drSKLMEqIRqGVkLr~~~ 23 (31)
T 3m1f_V 5 DHSKLMEQIRQGVKLKSAT 23 (31)
T ss_dssp THHHHHHHHHHCCCCBCC-
T ss_pred hHHHHHHHHHhhhccccCC
Confidence 4667899999999999754
No 211
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=30.00 E-value=67 Score=28.12 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.0
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
.+++||+|.|.+-..|...+..|+..|++ ..+|.++
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG 92 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGG 92 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCC
Confidence 57899999999999999999999999996 5567664
No 212
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=29.70 E-value=74 Score=34.02 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=13.3
Q ss_pred eEEecCCCcHHHHHHHHH
Q 002898 19 IAEMKTGEGKTLVSTLAA 36 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa 36 (869)
+..=.+|.|||.++-..+
T Consensus 55 ll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 55 LLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 556679999998765544
No 213
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=29.66 E-value=43 Score=29.03 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=30.1
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeec
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna 385 (869)
.+.+||+|.|.+-..|...+..|+..|+...+|.+
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~G 88 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEG 88 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecc
Confidence 35789999999999999999999999996556665
No 214
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=29.48 E-value=41 Score=29.25 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=30.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeec
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna 385 (869)
.+.+||+|.|.+-..|...+..|...|+...+|.+
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~G 88 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCC
Confidence 45789999999999999999999999996666665
No 215
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=28.94 E-value=37 Score=37.03 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.8
Q ss_pred eEEecCCCcHHHHHHHHHHHHHH------cCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNAL------TGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL------~G~~V~VvT~n 52 (869)
|+-.+=|+|||.+++-.|+..|. .|++|.+|=-.
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D 152 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC
Confidence 44457899999876666655563 68999888765
No 216
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=28.71 E-value=74 Score=34.19 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=23.3
Q ss_pred CCCeEE--ecCCCcHHHHHHHHHHHHHH------cCCcEEEEecCH
Q 002898 16 DGSIAE--MKTGEGKTLVSTLAAYLNAL------TGEGVHVVTVND 53 (869)
Q Consensus 16 ~G~IaE--m~TGEGKTLva~lpa~l~AL------~G~~V~VvT~nd 53 (869)
.|.+.+ -.+|.|||..+.-.++..++ .|.+|..++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455544 45899999866555542234 366776666654
No 217
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=28.23 E-value=87 Score=33.42 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.1
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+.-++||||+|.+
T Consensus 138 ~~~llvlDe~~~l 150 (412)
T 1w5s_A 138 HYLLVILDEFQSM 150 (412)
T ss_dssp CEEEEEEESTHHH
T ss_pred CeEEEEEeCHHHH
Confidence 4568999999997
No 218
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=27.82 E-value=70 Score=29.81 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=29.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
.+.+||+|.|.+-..|...+..|+..|++ ..+|.++
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG 114 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDG 114 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCC
Confidence 56789999999999999999999999994 6778775
No 219
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.77 E-value=59 Score=34.00 Aligned_cols=13 Identities=46% Similarity=0.928 Sum_probs=11.4
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..+++|||+|.+
T Consensus 133 ~~~vliiDE~~~l 145 (353)
T 1sxj_D 133 PYKIIILDEADSM 145 (353)
T ss_dssp SCEEEEETTGGGS
T ss_pred CceEEEEECCCcc
Confidence 5689999999986
No 220
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=27.64 E-value=1e+02 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=28.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCe-EEe
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPH-NVL 383 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~-~vL 383 (869)
.+.+||+|.|.+-..|...+..|.+.|++. .++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l 72 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA 72 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec
Confidence 567899999999999999999999999863 344
No 221
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=27.39 E-value=1.2e+02 Score=31.63 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 33 TLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 33 ~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
.+..++....+..+.|.+++..-|.+-++. +...|+.+..+.+++++.+|.... ..+|+.+|.
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~----l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGK----LKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHH----HHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHH----HHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 334444556678999999998766655444 455699999999999998887654 357898886
No 222
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.17 E-value=26 Score=39.56 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=58.9
Q ss_pred ccccccCh--hhhHHHHh-hhCCccccCcceeeeeeehhHhhhcC-------cccccCCCcccH-HHHHHHHhCCCeEEe
Q 002898 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (869)
Q Consensus 248 ~~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~It~q~~Fr~Y~-------kL~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (869)
.|+.+|+| |+....+. +|-+. -.+.+..+|+.+. -|+|=.||.+|. ++-+..-.|.+++.|
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~--------~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIV--------LPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTH--------HHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCChHhcCcHHHHHHHHHHHHH--------HHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 46789998 88776554 33332 2234555665553 689999999994 566777788888766
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchh
Q 002898 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (869)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~ 364 (869)
....-. .-|..+.++ .+..+-...+...|++||...+.
T Consensus 247 ~~s~l~-------~~~vGese~---~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 247 AAPQLV-------QMYIGEGAK---LVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp EGGGGC-------SSCSSHHHH---HHHHHHHHHHHHCSEEEEEECTH
T ss_pred ehhhhh-------hcccchHHH---HHHHHHHHHHhcCCeEEeecchh
Confidence 321100 013333333 33344444445679999976544
No 223
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.82 E-value=30 Score=39.20 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=60.1
Q ss_pred ccccccCh--hhhHHHHh-hhCCccccCcceeeeeeehhHhhhcC-------cccccCCCcccH-HHHHHHHhCCCeEEe
Q 002898 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (869)
Q Consensus 248 ~~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~It~q~~Fr~Y~-------kL~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (869)
.|+.+|+| ||..+.+. +|-+. -.+.+..+|+.|. -|+|-.||.+|. ++-+..-.+..++.|
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~--------~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVE--------LPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHH--------HHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHH--------HHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 46789998 88876553 33332 1244566776653 689999999994 566777888888766
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchh
Q 002898 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (869)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~ 364 (869)
-... .- .-|..+.++ .+..+-...+...|++||...+.
T Consensus 248 ~~s~--l~-----sk~vGesek---~ir~lF~~Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 248 VGSE--LI-----QKYLGDGPR---LCRQIFKVAGENAPSIVFIDEID 285 (437)
T ss_dssp ESGG--GC-----CSSSSHHHH---HHHHHHHHHHHTCSEEEEEEEES
T ss_pred EHHH--hh-----hccCchHHH---HHHHHHHHHHhcCCcEEEEehhh
Confidence 3211 00 002333333 34444444456789999976554
No 224
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.58 E-value=2.2e+02 Score=25.04 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=36.4
Q ss_pred CCcEEEEecc------hhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCc
Q 002898 353 GRPVLVGSTS------VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (869)
Q Consensus 353 grPVLV~t~S------i~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g 404 (869)
..||.||+.+ .-.|...-+.|.+.|++....+-. ...+...++....|...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~-~~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNIL-ENEMLRQGLKEYSNWPT 73 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG-GCHHHHHHHHHHHTCSS
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECC-CCHHHHHHHHHHHCCCC
Confidence 4589999985 888999999999999999988763 12222234555556543
No 225
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=26.48 E-value=50 Score=35.51 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.4
Q ss_pred CceEEEeechhhhhh
Q 002898 125 PFHFAIVDEVDSVLI 139 (869)
Q Consensus 125 ~~~~aIVDEvDsiLi 139 (869)
+..++++||+|.+.-
T Consensus 137 ~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 137 QKGIVFIDEIDKISR 151 (376)
T ss_dssp TTSEEEEETGGGC--
T ss_pred CCeEEEEcCHHHHhh
Confidence 457999999999753
No 226
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=26.21 E-value=70 Score=28.24 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=32.4
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
..+++||+|.|.+-..|...+..|+..|+...+|.++
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG 89 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGN 89 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCC
Confidence 3578999999999999999999999999976778775
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.06 E-value=34 Score=38.54 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=58.4
Q ss_pred ccccccCh--hhhHHHHh-hhCCccccCcceeeeeeehhHhhhcC-------cccccCCCcccH-HHHHHHHhCCCeEEe
Q 002898 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (869)
Q Consensus 248 ~~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~It~q~~Fr~Y~-------kL~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (869)
.|+-+|+| ||....+. +|-+. ..+.+..+|+.+. -|+|=.||.+|. ++-+..-.|.+++.|
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~--------~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVE--------LPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHH--------HHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH--------HHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 46788997 88765542 22221 2345566676653 789999999984 566777788888766
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchh
Q 002898 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (869)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~ 364 (869)
....-. .-|..+.++ .+.++-...+...|++||...+.
T Consensus 238 ~~~~l~-------~~~~Ge~e~---~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 238 NGSEFV-------HKYLGEGPR---MVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp EGGGTC-------CSSCSHHHH---HHHHHHHHHHHTCSEEEEEECTH
T ss_pred ecchhh-------ccccchhHH---HHHHHHHHHHHcCCCeeechhhh
Confidence 321100 002222222 23344444455789999976543
No 228
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=25.67 E-value=2.9e+02 Score=32.54 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=42.5
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 42 ~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
.|..|.|.|.+..-|.+-++ ++...|+++.++.+++++.+|.... ..+|++||+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~----~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~ 497 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTS----FLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 497 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHH----HHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred cCCEEEEEECCHHHHHHHHH----HHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC
Confidence 68899999998877765554 4455699999999999988887653 358999986
No 229
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=25.53 E-value=95 Score=39.06 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=0.0
Q ss_pred CeEEecCCCcHHHHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccCCCe
Q 002898 18 SIAEMKTGEGKTLVSTLAAYLNALT---GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDI 94 (869)
Q Consensus 18 ~IaEm~TGEGKTLva~lpa~l~AL~---G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~~DI 94 (869)
+++...-|+|||.+.+--+.-..-. +..+.+++||..=-. --..+...+|.... ..|
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt----~~~rl~~~l~~~~~----------------~~~ 63 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL----MEYELAKTPDMGGM----------------IRA 63 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH----HHHHHTCCSSCSEE----------------SSE
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH----HHHHHHHhhhhcce----------------eee
Q ss_pred EEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhh
Q 002898 95 TYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLI 139 (869)
Q Consensus 95 ~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLi 139 (869)
.++|...|++..|+.. . +..+-|+|+.|...+
T Consensus 64 ~V~TFhsla~~il~~~----------g---~~~~~ild~~~~~~l 95 (1166)
T 3u4q_B 64 QVFSFSRLAWRVLQHT----------G---GMSRPFLTSTGVQML 95 (1166)
T ss_dssp EEECHHHHHHHHHHHH----------S---CTTSCEECHHHHHHH
T ss_pred EEecHHHHHHHHHHHc----------C---CCcccCcCHHHHHHH
No 230
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=25.45 E-value=53 Score=29.14 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=29.7
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeec
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNA 385 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna 385 (869)
.+.+||+|.|.+-..|...+..|++.|++...|.+
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~G 88 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETT
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecC
Confidence 45789999999999999999999999997555544
No 231
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=25.36 E-value=50 Score=35.85 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=26.2
Q ss_pred CCCeEE--ecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 16 DGSIAE--MKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 16 ~G~IaE--m~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
.|.+.+ =..|.|||..+.-.+...+..|..|..++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 466444 46899999766555554556788888887654
No 232
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=25.32 E-value=1.6e+02 Score=31.82 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEeecCCcchh--hH-HHHHHHcCCCccEEEEc
Q 002898 346 VESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (869)
Q Consensus 346 i~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~--~E-a~Iia~AG~~g~VTIAT 410 (869)
+..+.+.|.+||+ ++.|.++++.+.+..++.|+...+-.-. .++. +. .+++ +.|.-|.|...+
T Consensus 81 ~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~-R~~p~~~~~k~~i-~~g~iG~i~~~~ 149 (387)
T 3moi_A 81 VVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSR-SHDPVVRTLRAIV-QEGSVGRVSMLN 149 (387)
T ss_dssp HHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCG-GGSHHHHHHHHHH-HHCTTCCEEEEE
T ss_pred HHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEecc-ccCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 3345577999999 6889999999999999999877553221 1111 12 2233 568888876554
No 233
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=25.07 E-value=63 Score=32.37 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=22.1
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
++-=+.|.|||-.+.-.+...+ .|+.|.||...
T Consensus 18 ~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 18 VFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred EEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 4455789999865444443346 88888888643
No 234
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=25.06 E-value=35 Score=35.23 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=11.5
Q ss_pred CceEEEeechhhh
Q 002898 125 PFHFAIVDEVDSV 137 (869)
Q Consensus 125 ~~~~aIVDEvDsi 137 (869)
+..++||||+|.+
T Consensus 110 ~~~vliiDe~~~l 122 (327)
T 1iqp_A 110 SFKIIFLDEADAL 122 (327)
T ss_dssp SCEEEEEETGGGS
T ss_pred CCeEEEEeCCCcC
Confidence 5789999999986
No 235
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=24.87 E-value=1.4e+02 Score=30.90 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 42 ~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
.+..+.|++++..-|.. +...+...|+.+..+.+++++.+|.... ..+|+++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~----l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKE----LASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHH----HHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHH----HHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 46678999999766554 4445555699999999999988887544 358999996
No 236
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=24.87 E-value=67 Score=33.15 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVV 49 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~Vv 49 (869)
|+=..||.|||.+++..+...+-.|..|..+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 5666899999987554444344567777654
No 237
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.80 E-value=40 Score=38.53 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=59.2
Q ss_pred ccccccCh--hhhHHHHh-hhCCccccCcceeeeeeehhHhhhcC-------cccccCCCcccH-HHHHHHHhCCCeEEe
Q 002898 248 EEKRRWSE--GIHQAVEA-KEGLKIQADSVVVAQITYQSLFKLYP-------KLSGMTGTAKTE-EKEFLKMFQMPVIEV 316 (869)
Q Consensus 248 ~~gr~ws~--GLHQaiea-KEgv~i~~e~~t~a~It~q~~Fr~Y~-------kL~GmTGTa~te-~~Ef~~iY~l~vv~I 316 (869)
.|+-+|+| ||....+. +|-+. -.+.+...|+.|. -|+|-.||.+|. ++-+..-.+..++.|
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~--------~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE--------LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH--------HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH--------HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 46788988 88775543 33332 1245566676653 689999999994 566777778887766
Q ss_pred CCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchh
Q 002898 317 PTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVE 364 (869)
Q Consensus 317 Pt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~ 364 (869)
-... .. .-|..+.++ .+.++-...+...|++||...+.
T Consensus 275 s~s~--L~-----sk~vGesek---~ir~lF~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 275 IGSE--LV-----QKYVGEGAR---MVRELFEMARTKKACIIFFDEID 312 (467)
T ss_dssp EGGG--GC-----CCSSSHHHH---HHHHHHHHHHHTCSEEEEEECCT
T ss_pred EhHH--hh-----cccCCHHHH---HHHHHHHHHHhcCCceEeecccc
Confidence 3211 00 012333333 33444444456789999977554
No 238
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=24.48 E-value=1.5e+02 Score=31.64 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 34 LAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 34 lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
+.-++....+.++.|.|++..-+..- ...+...|+.+..+.+++++.+|.... ..+|+.+|.
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l----~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWL----TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHH----HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHHH----HHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 33445667778999999987666544 444455699999999999998887654 357888885
No 239
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=24.40 E-value=63 Score=27.57 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~ 386 (869)
.+ +||+|.|.+-..|...+..|+..|++..+|.++
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG 86 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGG 86 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEccc
Confidence 35 899999999999999999999999986667664
No 240
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=24.36 E-value=69 Score=36.97 Aligned_cols=34 Identities=32% Similarity=0.261 Sum_probs=27.2
Q ss_pred eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~n 52 (869)
+.--++|.|||.+++-.|...|-.|+.|.++...
T Consensus 331 ~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 331 MLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 4566899999987666666677889999999776
No 241
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=24.20 E-value=62 Score=33.07 Aligned_cols=47 Identities=21% Similarity=0.054 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 25 GEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 25 GEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
|.|||..++-.+.-..-.|+.|.|++|.-- .|..+ ..+.+.+|+++-
T Consensus 38 gsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge--~~i~s~~g~~~~ 84 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSE--EDVVSHNGLKVK 84 (214)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CC
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchH--HHHHhhcCCeeE
Confidence 559998777777644568999999997532 33222 245555566543
No 242
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.10 E-value=64 Score=34.20 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=25.0
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
..|. +.--.+|.|||..+.-.++-.|..|.+|.+++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4566 666789999997655555434566767777663
No 243
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=24.10 E-value=51 Score=30.09 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=31.3
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
.+++||+|+|.+-..|...+..|.+.|++ ..+|.++
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG 116 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGG 116 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCc
Confidence 56789999999999999999999999986 6677775
No 244
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=24.02 E-value=2e+02 Score=30.26 Aligned_cols=103 Identities=8% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChh-HHHHHHHHHHHHHHhcCCcEEE---EecchhhHHHHHHHHHHC
Q 002898 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQ 376 (869)
Q Consensus 301 e~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~-~K~~aii~ei~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~ 376 (869)
.+++|.+.||.+-+ ..+.......+..|.|+.... .....++ ..+.+.|.+||+ ++.|.++++.+.+.-++.
T Consensus 61 ~a~~~a~~~g~~~~-y~d~~ell~~~~iDaV~I~tP~~~H~~~~---~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 136 (350)
T 4had_A 61 RAREMADRFSVPHA-FGSYEEMLASDVIDAVYIPLPTSQHIEWS---IKAADAGKHVVCEKPLALKAGDIDAVIAARDRN 136 (350)
T ss_dssp HHHHHHHHHTCSEE-ESSHHHHHHCSSCSEEEECSCGGGHHHHH---HHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCCee-eCCHHHHhcCCCCCEEEEeCCCchhHHHH---HHHHhcCCEEEEeCCcccchhhHHHHHHHHHHc
Confidence 35677777776421 122222233344666665433 3333333 334467999998 688999999999999999
Q ss_pred CCCeEEeecCCcchh--hH-HHHHHHcCCCccEEEE
Q 002898 377 GIPHNVLNARPKYAA--RE-AETVAQAGRKYAITIS 409 (869)
Q Consensus 377 gi~~~vLna~~~~~~--~E-a~Iia~AG~~g~VTIA 409 (869)
|+...+-.-. .++. +. .+++ +.|.-|.|.-.
T Consensus 137 ~~~l~v~~~~-R~~p~~~~~k~~i-~~G~iG~i~~i 170 (350)
T 4had_A 137 KVVVTEAYMI-TYSPVWQKVRSLI-DEGAIGSLRHV 170 (350)
T ss_dssp TCCEEECCGG-GGSHHHHHHHHHH-HTTTTSSEEEE
T ss_pred CCceeEeeee-ecCHHHHHhhHhh-hcCCCCcceee
Confidence 9887663321 1211 12 1233 57878877544
No 245
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=23.95 E-value=52 Score=31.21 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=24.2
Q ss_pred CCC--eEEecCCCcHHHHH-HHHHHHHHHcCCcEEEEecCHHH
Q 002898 16 DGS--IAEMKTGEGKTLVS-TLAAYLNALTGEGVHVVTVNDYL 55 (869)
Q Consensus 16 ~G~--IaEm~TGEGKTLva-~lpa~l~AL~G~~V~VvT~ndyL 55 (869)
.|. +.-=.+|.|||..+ ++.-.+..-.|..|..++..+.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 455 34446999999654 44333333458778777765543
No 246
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=23.80 E-value=3e+02 Score=30.42 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCe---EEeCCCCCcccccCCCeEEeChh-HHHHHHHHHHHHHHhcCCcEEE---EecchhhHHHHHHHHH
Q 002898 302 EKEFLKMFQMPV---IEVPTNLPNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLK 374 (869)
Q Consensus 302 ~~Ef~~iY~l~v---v~IPt~~p~~R~d~~d~i~~t~~-~K~~aii~ei~~~~~~grPVLV---~t~Si~~SE~ls~~L~ 374 (869)
.+++.+.|+... ....+..........|.|+.... .....++ ..+.+.|.+||+ ++.|.++++.+.+..+
T Consensus 122 ~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~---~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~ 198 (433)
T 1h6d_A 122 AKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFA---IRAFKAGKHVMCEKPMATSVADCQRMIDAAK 198 (433)
T ss_dssp HHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHH---HHHHHTTCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhHHHHH---HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 456777888652 22233333333334676665433 3333333 344577999998 4678899999999999
Q ss_pred HCCCCeEEeecCCcchh--hHH-HHHHHcCCCccEEEEc
Q 002898 375 QQGIPHNVLNARPKYAA--REA-ETVAQAGRKYAITIST 410 (869)
Q Consensus 375 ~~gi~~~vLna~~~~~~--~Ea-~Iia~AG~~g~VTIAT 410 (869)
+.|+...+-.-. .++. +.. +++ +.|.-|.|.-..
T Consensus 199 ~~g~~~~v~~~~-R~~p~~~~~k~~i-~~G~iG~i~~v~ 235 (433)
T 1h6d_A 199 AANKKLMIGYRC-HYDPMNRAAVKLI-RENQLGKLGMVT 235 (433)
T ss_dssp HHTCCEEECCGG-GGCHHHHHHHHHH-HTTSSCSEEEEE
T ss_pred HhCCeEEEEech-hcCHHHHHHHHHH-HcCCCCCcEEEE
Confidence 999887553221 1111 121 233 568788776443
No 247
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=23.79 E-value=53 Score=37.94 Aligned_cols=30 Identities=33% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCcEEEEecCHH
Q 002898 25 GEGKTLVSTLAAYLNALTGEGVHVVTVNDY 54 (869)
Q Consensus 25 GEGKTLva~lpa~l~AL~G~~V~VvT~ndy 54 (869)
|||||.+++=.+...|..|++|.++--++.
T Consensus 71 GEGKSTtsinLA~alA~~GkkVLLiLR~Ps 100 (557)
T 3pzx_A 71 GEGKTTTSVGLTDALARLGKRVMVCLREPS 100 (557)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 999998766555556889999998844443
No 248
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=23.72 E-value=1.8e+02 Score=30.43 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=40.8
Q ss_pred HHHHhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEeecCCcchh--hH-HHHHHHcCCCccEEEEc
Q 002898 347 ESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (869)
Q Consensus 347 ~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~--~E-a~Iia~AG~~g~VTIAT 410 (869)
..+.+.|.+||+ .+.|.++++.+.+..++.|+...+-.-. .++. +. .+++ +.|.-|.|....
T Consensus 81 ~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~-r~~p~~~~~~~~i-~~g~iG~i~~~~ 148 (331)
T 4hkt_A 81 ERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNR-RFDPHFMAVRKAI-DDGRIGEVEMVT 148 (331)
T ss_dssp HHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGG-GGCHHHHHHHHHH-HTTTTCSEEEEE
T ss_pred HHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccc-cCCHHHHHHHHHH-HcCCCCceEEEE
Confidence 344567999998 6789999999999999999887653221 1111 11 2233 567788776543
No 249
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=23.61 E-value=2.5e+02 Score=24.25 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=37.3
Q ss_pred HHHHHHhcCCcEEEEec------chhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHHcCCCc
Q 002898 345 EVESMFRLGRPVLVGST------SVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKY 404 (869)
Q Consensus 345 ei~~~~~~grPVLV~t~------Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~AG~~g 404 (869)
.+.+..+. -||+||+. ..-.|..+...|.+.|++...+|-.. +.+.-.++....|..+
T Consensus 9 ~~~~~i~~-~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~ 72 (105)
T 2yan_A 9 RLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKAYSNWPT 72 (105)
T ss_dssp HHHHHHTS-SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG-CHHHHHHHHHHHTCCS
T ss_pred HHHHHhcc-CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC-CHHHHHHHHHHHCCCC
Confidence 33333343 37888884 56678999999999999999888742 2111123445556554
No 250
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=23.52 E-value=1.7e+02 Score=31.14 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHhcCCcEEE---EecchhhHHHHHHHHHHCCCCeEEeecCCcchh--hH-HHHHHHcCCCccEEEE
Q 002898 347 ESMFRLGRPVLV---GSTSVENSEYLSDLLKQQGIPHNVLNARPKYAA--RE-AETVAQAGRKYAITIS 409 (869)
Q Consensus 347 ~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~--~E-a~Iia~AG~~g~VTIA 409 (869)
..+.+.|.+||+ ++.|.++++.+.+..++.|+...+-.-. .++. +. .+++ +.|.-|.|.-.
T Consensus 84 ~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~-R~~p~~~~~k~~i-~~g~iG~i~~v 150 (354)
T 3db2_A 84 EQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSS-RRLGALRKMKEMI-DTKEIGEVSSI 150 (354)
T ss_dssp HHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGG-GGSHHHHHHHHHH-HTTTTCCEEEE
T ss_pred HHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeech-hcCHHHHHHHHHH-hcCCCCCeEEE
Confidence 345577999999 6788999999999999999887653321 1211 12 1233 56888887644
No 251
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=23.28 E-value=3.2e+02 Score=30.23 Aligned_cols=102 Identities=13% Similarity=-0.044 Sum_probs=61.4
Q ss_pred HHHHHhCCCe-EEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecc-----hhhHHHHHHHHHHCC
Q 002898 304 EFLKMFQMPV-IEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS-----VENSEYLSDLLKQQG 377 (869)
Q Consensus 304 Ef~~iY~l~v-v~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~S-----i~~SE~ls~~L~~~g 377 (869)
-+.++-++++ ...|.|-|..|.+.. .+ ...-.+|.. .......|+|+--| ...++.+++-|.+.|
T Consensus 224 ~L~kl~~Ldi~~I~P~HGpi~r~~~~-~i-i~~Y~~w~~-------~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~G 294 (410)
T 4dik_A 224 GAEKLSSLKIKALLPGHGLIWKKDPQ-RL-LNHYVSVAK-------GDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKG 294 (410)
T ss_dssp HHHHHHTSCCSEEEESSSCBBSSCHH-HH-HHHHHHHHH-------TCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCEEecCCcchhhcCHH-HH-HHHHHHhhc-------ccccccceeeEEecccChHHHHHHHHHHHHHhcC
Confidence 3556778886 567999999874421 11 111222221 00112247776555 456889999999999
Q ss_pred CCeEEeecCCcchhhHHHHHHHcCCCccEEEEcCCCc
Q 002898 378 IPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAG 414 (869)
Q Consensus 378 i~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIATnmAG 414 (869)
++..+.+-..-....-.+|++.+.+...|.|+|..-+
T Consensus 295 v~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~ 331 (410)
T 4dik_A 295 FTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE 331 (410)
T ss_dssp CEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT
T ss_pred CceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC
Confidence 9876543210011224578888888889999887654
No 252
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=23.13 E-value=1.3e+02 Score=29.54 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=26.7
Q ss_pred hCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 15 HDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 15 ~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
..|. +.--.+|.|||..+.-.+...+-.|.+|..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3565 45567999999875544443456788888888654
No 253
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=22.92 E-value=34 Score=37.43 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=16.9
Q ss_pred eEEecCCCcHHHHHHHHHHHHH------HcCCcEEEEecC
Q 002898 19 IAEMKTGEGKTLVSTLAAYLNA------LTGEGVHVVTVN 52 (869)
Q Consensus 19 IaEm~TGEGKTLva~lpa~l~A------L~G~~V~VvT~n 52 (869)
|+--+=|+|||.+++-.|+..| -.|+.|.+|=-.
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D 155 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD 155 (403)
T ss_dssp ECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEES
T ss_pred EEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC
Confidence 3445789999987666665556 468899887654
No 254
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=22.76 E-value=2.4e+02 Score=29.75 Aligned_cols=104 Identities=10% Similarity=-0.074 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCeEEeCCCCCcccccCCCeEEeChh-HHHHHHHHHHHHHHhcCCcEEE---EecchhhHHHHHHHHHHC
Q 002898 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATAR-GKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQ 376 (869)
Q Consensus 301 e~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t~~-~K~~aii~ei~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~ 376 (869)
.++++.+.||..-+ .............|.|+.... .....++ ..+.+.|.+||+ ++.|.++++.+.+.-++.
T Consensus 69 ~a~~~a~~~g~~~~-y~d~~ell~~~~iDaV~IatP~~~H~~~a---~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 144 (393)
T 4fb5_A 69 LAEARAGEFGFEKA-TADWRALIADPEVDVVSVTTPNQFHAEMA---IAALEAGKHVWCEKPMAPAYADAERMLATAERS 144 (393)
T ss_dssp THHHHHHHHTCSEE-ESCHHHHHHCTTCCEEEECSCGGGHHHHH---HHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCee-cCCHHHHhcCCCCcEEEECCChHHHHHHH---HHHHhcCCeEEEccCCcccHHHHHHhhhhHHhc
Confidence 35667777776521 122222222234566654433 3333333 334467999998 688999999999999999
Q ss_pred CCCeEEeecCCcchh--hHH-HHHHHcCCCccEEEEc
Q 002898 377 GIPHNVLNARPKYAA--REA-ETVAQAGRKYAITIST 410 (869)
Q Consensus 377 gi~~~vLna~~~~~~--~Ea-~Iia~AG~~g~VTIAT 410 (869)
|+...+-.-. .++. +.. +++ +.|.-|.|.-..
T Consensus 145 g~~l~vg~~~-R~~p~~~~~k~~i-~~G~iG~i~~v~ 179 (393)
T 4fb5_A 145 GKVAALGYNY-IQNPVMRHIRKLV-GDGVIGRVNHVR 179 (393)
T ss_dssp SSCEEECCGG-GGCHHHHHHHHHH-HTTTTCSEEEEE
T ss_pred CCcccccccc-ccChHHHHHHHHH-HcCCCcccccee
Confidence 9887664321 1211 222 233 568888876543
No 255
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=22.45 E-value=56 Score=29.58 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=30.5
Q ss_pred hcCCcEEEEecchhh--HHHHHHHHHHCCCCeEEeecC
Q 002898 351 RLGRPVLVGSTSVEN--SEYLSDLLKQQGIPHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~--SE~ls~~L~~~gi~~~vLna~ 386 (869)
.+.+||+|.|.+-.. |...+..|+..|+...+|.++
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG 106 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGA 106 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCc
Confidence 457899999999887 899999999999986667663
No 256
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.41 E-value=2.4e+02 Score=29.60 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=57.3
Q ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCCeEEeC-hhHHHHHHHHHHHHHHhcCCcEEE---EecchhhHHHHHHHHHHCC
Q 002898 302 EKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFAT-ARGKWEYARQEVESMFRLGRPVLV---GSTSVENSEYLSDLLKQQG 377 (869)
Q Consensus 302 ~~Ef~~iY~l~vv~IPt~~p~~R~d~~d~i~~t-~~~K~~aii~ei~~~~~~grPVLV---~t~Si~~SE~ls~~L~~~g 377 (869)
+++|.+.|+.+.+ ..+..........|.|+.. .......+ +..+.+.|.+||+ ++.|.++++.+.+..++.|
T Consensus 42 a~~~a~~~~~~~~-~~~~~~ll~~~~vD~V~i~tp~~~H~~~---~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 117 (334)
T 3ohs_X 42 AKEFAQKHDIPKA-YGSYEELAKDPNVEVAYVGTQHPQHKAA---VMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRG 117 (334)
T ss_dssp HHHHHHHHTCSCE-ESSHHHHHHCTTCCEEEECCCGGGHHHH---HHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcc-cCCHHHHhcCCCCCEEEECCCcHHHHHH---HHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4556666665311 1111111222235555543 33333333 3344577999998 6789999999999999999
Q ss_pred CCeEEeecCCcchh--hH-HHHHHHcCCCccEEEEc
Q 002898 378 IPHNVLNARPKYAA--RE-AETVAQAGRKYAITIST 410 (869)
Q Consensus 378 i~~~vLna~~~~~~--~E-a~Iia~AG~~g~VTIAT 410 (869)
+...+-.-. .++. +. .+++ +.|.-|.|.-.+
T Consensus 118 ~~~~v~~~~-r~~p~~~~~k~~i-~~g~iG~i~~v~ 151 (334)
T 3ohs_X 118 LFLMEAIWT-RFFPASEALRSVL-AQGTLGDLRVAR 151 (334)
T ss_dssp CCEEEECGG-GGSHHHHHHHHHH-HHTTTCSEEEEE
T ss_pred CEEEEEEhH-hcCHHHHHHHHHH-hcCCCCCeEEEE
Confidence 877653221 1111 11 2233 457788776554
No 257
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=22.39 E-value=56 Score=41.33 Aligned_cols=50 Identities=12% Similarity=-0.038 Sum_probs=36.4
Q ss_pred EecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEE
Q 002898 21 EMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGL 76 (869)
Q Consensus 21 Em~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~ 76 (869)
-=.||+|||++++ .+.. -.++++.|||+|..+|.+-++++..|+ +-.|..
T Consensus 23 ~G~~gs~ka~~~a--~l~~-~~~~p~lvv~~~~~~A~~l~~el~~f~---~~~V~~ 72 (1151)
T 2eyq_A 23 GELTGAACATLVA--EIAE-RHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMN 72 (1151)
T ss_dssp CCCCTTHHHHHHH--HHHH-SSSSEEEEEESSHHHHHHHHHHHGGGC---SSCEEE
T ss_pred eCCchHHHHHHHH--HHHH-hhCCCEEEEeCCHHHHHHHHHHHHhhc---CCcEEE
Confidence 3358999988655 2222 236689999999999999999988775 445554
No 258
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=22.25 E-value=2.4e+02 Score=30.99 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=36.8
Q ss_pred CCcEEEEecchhhHHHHHHHHHHC----CCCeEEeecCCcchhhHHHHHHHcCCCccEEEEc
Q 002898 353 GRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410 (869)
Q Consensus 353 grPVLV~t~Si~~SE~ls~~L~~~----gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIAT 410 (869)
+.++||.+++.+-++...+.+++. |+.+..++++.....+...+.. ...|+|+|
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T 109 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILT 109 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEEC
Confidence 778999999998888777666554 8999999986433333222322 24577776
No 259
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=22.22 E-value=77 Score=33.17 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=12.8
Q ss_pred eEEecCCCcHHHHHHHH
Q 002898 19 IAEMKTGEGKTLVSTLA 35 (869)
Q Consensus 19 IaEm~TGEGKTLva~lp 35 (869)
+..=.+|.|||.++-..
T Consensus 59 ll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 59 LFSGPAGLGKTTLANII 75 (338)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHH
Confidence 66678999999866443
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=22.18 E-value=97 Score=33.34 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=30.9
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEE
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVG 75 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~ 75 (869)
.+|.|||.+....+.+..-.|..|.++...-+-+. ..+++......+|+.+.
T Consensus 137 ~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~-a~eql~~~~~~~gv~~v 188 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG-AIEQLEEHAKRIGVKVI 188 (328)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT-HHHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc-hHHHHHHHHHHcCceEE
Confidence 48999987655555555667888888865433111 12334444556666544
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=22.17 E-value=4.6e+02 Score=24.07 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=21.4
Q ss_pred ccccCCCccc-HHHHHHHHhCCCeEEeC
Q 002898 291 LSGMTGTAKT-EEKEFLKMFQMPVIEVP 317 (869)
Q Consensus 291 L~GmTGTa~t-e~~Ef~~iY~l~vv~IP 317 (869)
+.|++|+.+| -++.|.+.++..++.+.
T Consensus 8 l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 7899999997 57888888888776543
No 262
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=21.70 E-value=2.3e+02 Score=35.69 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=43.5
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHH---CCCCeEEeecCCcchhhHHHHHH-HcCCCccEEEEcC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQ---QGIPHNVLNARPKYAAREAETVA-QAGRKYAITISTN 411 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~---~gi~~~vLna~~~~~~~Ea~Iia-~AG~~g~VTIATn 411 (869)
..|..+||.+++.+-+..+.+.|++ .|+.+..++++....+++..+-. ..| .-.|+|+|.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~IlV~Tp 182 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFST 182 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEEEEEH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEEEECH
Confidence 5678899999999999999999988 57888999986433333322222 233 347889983
No 263
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=21.63 E-value=80 Score=36.02 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQ 376 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~ 376 (869)
+.++|+||.|.+...++.+++.|+..
T Consensus 37 ~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 37 RHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp HSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 35889999999999999999999874
No 264
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=21.49 E-value=1.5e+02 Score=31.51 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=43.3
Q ss_pred HHHH-cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 38 LNAL-TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 38 l~AL-~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
+... .+..+.|.+++..-|..-++ .+...|+.+..+.+++++++|.... ..+|+++|.
T Consensus 270 l~~~~~~~~~lVf~~~~~~~~~l~~----~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 270 LNATGKDSLTLVFVETKKGADSLED----FLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp HHTCCTTCEEEEECSSHHHHHHHHH----HHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred HHhcCCCCeEEEEECCHHHHHHHHH----HHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 3444 46789999999876665444 4455699999999999998887654 357888885
No 265
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.38 E-value=86 Score=34.07 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=26.9
Q ss_pred HhCCC--eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEec
Q 002898 14 LHDGS--IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTV 51 (869)
Q Consensus 14 L~~G~--IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ 51 (869)
+..|. |.--.+|.|||..+.-.+.-.|..|..|.+++-
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44566 677789999997665555545667878877764
No 266
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=21.24 E-value=87 Score=30.75 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCC--eEEecCCCcHHHHHHHHHHHHHHc-CCcEEEEecC
Q 002898 16 DGS--IAEMKTGEGKTLVSTLAAYLNALT-GEGVHVVTVN 52 (869)
Q Consensus 16 ~G~--IaEm~TGEGKTLva~lpa~l~AL~-G~~V~VvT~n 52 (869)
.|. +.--.+|.|||..+.=-++-.+.. |+.|.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 455 566679999997654434322343 6778877753
No 267
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=21.22 E-value=1.6e+02 Score=34.12 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=42.7
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 42 TGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 42 ~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
.|..+.|.|.+..-+.+-++.+ ...|+.+..+.++|++++|.... ..+|+++|+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L----~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSL----QNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHH----HHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred cCCCeEEEeCcHHHHHHHHHHH----HHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 5778999999987776655554 45699999999999999987654 358999996
No 268
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=21.13 E-value=76 Score=28.94 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=31.4
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
.+.+||+|.|.+-..|...+..|+..|+. ..+|.++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG 120 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGG 120 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCC
Confidence 56899999999999999999999999996 6677774
No 269
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=21.05 E-value=76 Score=29.34 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=31.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
.+.+||+|.|.+-..|...+..|+..|++ ..+|.++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG 116 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGG 116 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSC
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCc
Confidence 56889999999999999999999999995 6677775
No 270
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=20.64 E-value=1.8e+02 Score=28.10 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=36.5
Q ss_pred CCcEEEEecchhhHHHHHHHHHHC-----CCCeEEeecCCcchhhHHHHHHHcCCCccEEEEc
Q 002898 353 GRPVLVGSTSVENSEYLSDLLKQQ-----GIPHNVLNARPKYAAREAETVAQAGRKYAITIST 410 (869)
Q Consensus 353 grPVLV~t~Si~~SE~ls~~L~~~-----gi~~~vLna~~~~~~~Ea~Iia~AG~~g~VTIAT 410 (869)
+.++||.+++.+-++.+.+.+++. ++.+.+++++..... ....+.+ + ...|+|+|
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~-~~~~~~~-~-~~~i~v~T 141 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK-DEEVLKK-N-CPHIVVGT 141 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH-HHHHHHH-S-CCSEEEEC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHH-HHHHHhc-C-CCCEEEeC
Confidence 457999999999999888877664 688888887632222 2222222 2 23677777
No 271
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=20.60 E-value=2.1e+02 Score=31.36 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=40.6
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhcc------CCCeEEECC
Q 002898 43 GEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNY------RCDITYTNN 99 (869)
Q Consensus 43 G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY------~~DI~YgT~ 99 (869)
+.++.|.+.+..-|. .+...+...|+.+..+.++++..+|..+. .++|+++|.
T Consensus 300 ~~~~lVF~~t~~~a~----~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGAD----FLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHH----HHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred CCCEEEEEeCcHHHH----HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 445999999876555 44555556799999999999998887654 358999996
No 272
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=20.56 E-value=3.7e+02 Score=29.61 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=54.6
Q ss_pred CchhhHHHHH-HHh------CCC-eEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHH--H-HHHHHHHHHhhhcC
Q 002898 3 HFDVQIIGGA-VLH------DGS-IAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLA--Q-RDAEWMERVHRFLG 71 (869)
Q Consensus 3 p~dvQl~g~~-~L~------~G~-IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA--~-RDae~~~~ly~~LG 71 (869)
-+|+|.++=+ .+. +|. |+=+ |-||.-++-=-+.+.+..|-.|.+++|-.|.- . ...++...+.+..|
T Consensus 159 ~HPtQaLaDl~Ti~E~~G~l~glkva~v--GD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g 236 (365)
T 4amu_A 159 EHPTQIIADFMTMKEKFGNLKNKKIVFI--GDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG 236 (365)
T ss_dssp CCHHHHHHHHHHHHHHHSSCTTCEEEEE--SSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCEEEEE--CCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC
Confidence 4799998855 332 333 5544 67764332222223456799999999988765 2 23345566677778
Q ss_pred CeEEEEcCCCCHHHHHhccCCCeEEECC
Q 002898 72 LSVGLIQRGMIPEERRSNYRCDITYTNN 99 (869)
Q Consensus 72 Lsv~~i~~~~~~~~rk~aY~~DI~YgT~ 99 (869)
.++.+.. +++ ...-+|||+|.+.
T Consensus 237 ~~i~~~~---d~~--eav~~aDVVytd~ 259 (365)
T 4amu_A 237 GSLRFST---DKI--LAAQDADVIYTDV 259 (365)
T ss_dssp CEEEEES---CHH--HHTTTCSEEEECC
T ss_pred CEEEEEC---CHH--HHhcCCCEEEecc
Confidence 7665432 232 2456799999863
No 273
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=20.48 E-value=2e+02 Score=33.16 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=21.8
Q ss_pred cCCCcHHHHHHHHHHHHHHcCCcEEEEecCH
Q 002898 23 KTGEGKTLVSTLAAYLNALTGEGVHVVTVND 53 (869)
Q Consensus 23 ~TGEGKTLva~lpa~l~AL~G~~V~VvT~nd 53 (869)
.+|.|||.++.+.+.+..-.|..|.+.....
T Consensus 301 pNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 5899998765555555566788888875443
No 274
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=20.47 E-value=3.3e+02 Score=26.53 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.7
Q ss_pred hcCCcEEEEecchhhHHHHHHHHHHC----CCCeEEeecC
Q 002898 351 RLGRPVLVGSTSVENSEYLSDLLKQQ----GIPHNVLNAR 386 (869)
Q Consensus 351 ~~grPVLV~t~Si~~SE~ls~~L~~~----gi~~~vLna~ 386 (869)
..|..+||.+++.+-++.+.+.++.. ++.+..++++
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 134 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG 134 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECC
Confidence 35678999999999999888888764 3677777775
No 275
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=20.21 E-value=93 Score=28.98 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.3
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHHHCCCC-eEEeecC
Q 002898 350 FRLGRPVLVGSTSVENSEYLSDLLKQQGIP-HNVLNAR 386 (869)
Q Consensus 350 ~~~grPVLV~t~Si~~SE~ls~~L~~~gi~-~~vLna~ 386 (869)
..+.+||+|+|.+-..|...+..|+..|+. ..+|.++
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG 90 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGG 90 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCH
Confidence 356789999999999999999999999995 5667663
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=20.06 E-value=1.6e+02 Score=31.87 Aligned_cols=70 Identities=31% Similarity=0.407 Sum_probs=39.8
Q ss_pred ccccCCCcccH-HHHHHHHhCCCeEE-----------eCCCCCcccc-----------cCCCeEEeChhHHHHHHHHHHH
Q 002898 291 LSGMTGTAKTE-EKEFLKMFQMPVIE-----------VPTNLPNIRV-----------DLPIQSFATARGKWEYARQEVE 347 (869)
Q Consensus 291 L~GmTGTa~te-~~Ef~~iY~l~vv~-----------IPt~~p~~R~-----------d~~d~i~~t~~~K~~aii~ei~ 347 (869)
++|-||+.+|. +.++.+.++..++. |-|.+|..-. ..|+.-| +..+........|.
T Consensus 15 i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~-s~~~f~~~a~~~i~ 93 (316)
T 3foz_A 15 LMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAY-SAADFRRDALAEMA 93 (316)
T ss_dssp EECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCC-CHHHHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccc-cHHHHHHHHHHHHH
Confidence 78999999984 67787778765544 4667775311 1122222 22333333344555
Q ss_pred HHHhcC-CcEEEEec
Q 002898 348 SMFRLG-RPVLVGST 361 (869)
Q Consensus 348 ~~~~~g-rPVLV~t~ 361 (869)
+.++.| .|||||-+
T Consensus 94 ~i~~~g~~pilVGGT 108 (316)
T 3foz_A 94 DITAAGRIPLLVGGT 108 (316)
T ss_dssp HHHHTTCEEEEEESC
T ss_pred HHHhCCCcEEEEcCc
Confidence 555555 47888743
No 277
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=25.37 E-value=22 Score=33.87 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCCCCHHHHHhccC------CCeEEECC
Q 002898 38 LNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYR------CDITYTNN 99 (869)
Q Consensus 38 l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~~~~~~rk~aY~------~DI~YgT~ 99 (869)
+....+..+.|.|++..-+..-++ .+...|+.+..+.+++++.+|..... .+|+.+|.
T Consensus 25 l~~~~~~~~iVF~~~~~~~~~l~~----~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 25 LKQPEATRSIVFVRKRERVHELAN----WLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 334456778888888766554444 44456999999999999888875542 36777773
Done!