BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002900
(869 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 351 bits (901), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 187/356 (52%), Positives = 250/356 (70%), Gaps = 21/356 (5%)
Query: 5 LVKKDDDRDDEAE--YSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGET 62
++KK D +D+E+ +PF +EK AVLQEARVFN+ ++PR+C+ ++TK+LYL+NQGE
Sbjct: 1 MLKKFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEH 60
Query: 63 FTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMY 122
EATE FFA+TKLFQS D LRRM YL IKE+S A++VIIVTSSL KDMT K D Y
Sbjct: 61 LGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSY 120
Query: 123 RANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNE 182
R A+R LC+ITD T+L IERY+KQAIVDK P V+S+ALVS +HLL+ + ++VKRW NE
Sbjct: 121 RGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180
Query: 183 VQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVI 242
QEA S +VQ+HAL LL+ +R+NDRLAVSK+++ TR ++SP A C++IR ++ +
Sbjct: 181 AQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240
Query: 243 REAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSS 302
+ ++ D P +DF+ESCLR+K EMV++EAA AI L G + +EL PA++VLQLF SS
Sbjct: 241 EDEDGSR--DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSS 298
Query: 303 SKPVLRFAAVRTLNK-----------------SLISDQNRSXXXXXXXXXXKTGNE 341
K LR+AAVRTLNK +L++D NRS KTG+E
Sbjct: 299 PKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain
In The Carboxyl-terminus Of The Copi Gamma-subunit
Length = 322
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 179/321 (55%), Gaps = 11/321 (3%)
Query: 547 LANIETSLKNY--EPAEQPFDINSVPKEVKTQPLAEKKAPGKMXXXXXXXXXXXXXTVDA 604
+ +E +L+ Y EP+E+PFD+ SVP + T PLAE++ +
Sbjct: 3 IPGLERALQQYTLEPSEKPFDLKSVP--LATAPLAEQRTESTPVTAAKQPEKVAATRQEI 60
Query: 605 YEKLLSSIPEFSDFGKLFKSSA-PVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQ 663
+++ L+++PEF G LFKSS PV LTE+ETEY + KH F H+VFQ++CTNT+ +Q
Sbjct: 61 FQEQLAAVPEFQGLGPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQ 120
Query: 664 LLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQIFG--AFEKPEGVPAVGKFSNMLRF 721
LENVTV ++ P RSLPY+ PG + A K + FS +++F
Sbjct: 121 TLENVTVQMEPSEAYEVLCYV--PARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKF 178
Query: 722 IVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYG 781
VK+ DPTT Y LEDLEV AD++ KV NF AW+ +G +F++ + +
Sbjct: 179 TVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFT 238
Query: 782 LGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDG 841
L ++L EAV ++ LGM PCE ++ V +N +HT LL+GVF G +LVR + +
Sbjct: 239 LSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLL- 297
Query: 842 PKEVAMKLAVRSEDDNVSDMI 862
V M++ RS ++ D++
Sbjct: 298 -DTVTMQVTARSSEELPVDIV 317
>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage
Domain
Length = 275
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 152/261 (58%), Gaps = 7/261 (2%)
Query: 605 YEKLLSSIPEFSDFGKLFKSSA-PVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQ 663
+++ L+++PEF G LFKSS PV LTE+ETEY + KH F H+VFQ++CTNT+ +Q
Sbjct: 14 FQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQ 73
Query: 664 LLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQIFG--AFEKPEGVPAVGKFSNMLRF 721
LENVTV ++ P RSLPY+ PG + A K + FS M++F
Sbjct: 74 TLENVTVQMEPTEAYEVLXYV--PARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKF 131
Query: 722 IVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYG 781
VK+ DPTT Y LEDLEV AD++ KV NF AW+ +G +FE+ + +
Sbjct: 132 TVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFT 191
Query: 782 LGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDG 841
L ++L EAV ++ LGM PCE ++ V +N +HT LL+GVF G +LVR + +
Sbjct: 192 LSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLL-- 249
Query: 842 PKEVAMKLAVRSEDDNVSDMI 862
V M++ RS ++ D+I
Sbjct: 250 LDTVTMQVTARSLEELPVDII 270
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 100/552 (18%), Positives = 226/552 (40%), Gaps = 72/552 (13%)
Query: 21 FLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQ 80
F +KG + + N+ + + R+ + + K++ + G+ + + +F V Q
Sbjct: 7 FTTNKKGEIFELKAELNNEKKEKRK--EAVKKVIAAMTVGK-----DVSSLFPDVVNCMQ 59
Query: 81 SRDIGLRRMVYLMIKELSPSA-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLL 139
+ ++ L+++VYL + + S D I+ +S +KD + RA A+R + I +
Sbjct: 60 TDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKIT 119
Query: 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV--KRWSNEVQEAVQSRAALVQFH 197
+ L++ + D++P V A V L ++V + + + +++ + +V +
Sbjct: 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVAN 179
Query: 198 ALALLHQIRQ---NDRL------AVSKLVTSLTRGTVRSP--LAQCLLIRYTTQVIREAA 246
A+A L +I + N L ++KL+T+L T + C L Y + REA
Sbjct: 180 AVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDC-LSNYNPKDDREAQ 238
Query: 247 TTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL-----------NGVTNRELTPAITV 295
+ P L H V+ A + + + N + + P +T+
Sbjct: 239 SICERVTPR-------LSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL 291
Query: 296 LQLFLSSSKPVLRFAAVRTLN--------------KSLISDQNRSXXXXXXXX--XXKTG 339
L S +P +++ A+R +N K N +
Sbjct: 292 L-----SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 346
Query: 340 NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFE 399
+++++ +++ ++ + +++ +F V AI +K ++ L ++++ + +
Sbjct: 347 SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYV 406
Query: 400 YKKAIVDSIVILIRDI----PDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD 455
++AIV +IRDI P+ E+ + LCE ++ + ++ +G + +
Sbjct: 407 VQEAIV-----VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN 461
Query: 456 PSKYIRYIYNRVHLENATVRAAAVSTLAK-FGAMVDALKPRVFVLLRRCLYDGDD-EVRD 513
+ + H E+ V+ ++ + K F + V +L D D+ ++RD
Sbjct: 462 ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRD 521
Query: 514 RATLYLNTVGSD 525
R +Y + +D
Sbjct: 522 RGYIYWRLLSTD 533
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 100/552 (18%), Positives = 226/552 (40%), Gaps = 72/552 (13%)
Query: 21 FLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQ 80
F +KG + + N+ + + R+ + + K++ + G+ + + +F V Q
Sbjct: 7 FTTNKKGEIFELKAELNNEKKEKRK--EAVKKVIAAMTVGK-----DVSSLFPDVVNCMQ 59
Query: 81 SRDIGLRRMVYLMIKELSPSA-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLL 139
+ ++ L+++VYL + + S D I+ +S +KD + RA A+R + I +
Sbjct: 60 TDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKIT 119
Query: 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV--KRWSNEVQEAVQSRAALVQFH 197
+ L++ + D++P V A V L ++V + + + +++ + +V +
Sbjct: 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVAN 179
Query: 198 ALALLHQIRQ---NDRL------AVSKLVTSLTRGTVRSP--LAQCLLIRYTTQVIREAA 246
A+A L +I + N L ++KL+T+L T + C L Y + REA
Sbjct: 180 AVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDC-LSNYNPKDDREAQ 238
Query: 247 TTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL-----------NGVTNRELTPAITV 295
+ P L H V+ A + + + N + + P +T+
Sbjct: 239 SICERVTPR-------LSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL 291
Query: 296 LQLFLSSSKPVLRFAAVRTLN--------------KSLISDQNRSXXXXXXXX--XXKTG 339
L S +P +++ A+R +N K N +
Sbjct: 292 L-----SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 346
Query: 340 NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFE 399
+++++ +++ ++ + +++ +F V AI +K ++ L ++++ + +
Sbjct: 347 SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYV 406
Query: 400 YKKAIVDSIVILIRDI----PDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD 455
++AIV +IRDI P+ E+ + LCE ++ + ++ +G + +
Sbjct: 407 VQEAIV-----VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN 461
Query: 456 PSKYIRYIYNRVHLENATVRAAAVSTLAK-FGAMVDALKPRVFVLLRRCLYDGDD-EVRD 513
+ + H E+ V+ ++ + K F + V +L D D+ ++RD
Sbjct: 462 ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRD 521
Query: 514 RATLYLNTVGSD 525
R +Y + +D
Sbjct: 522 RGYIYWRLLSTD 533
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/499 (17%), Positives = 208/499 (41%), Gaps = 51/499 (10%)
Query: 67 EATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-DEVIIVTSSLMKDMTSKTDMYRAN 125
+ + +F V Q+ ++ L+++VYL + + S D I+ ++ +KD + RA
Sbjct: 46 DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRAL 105
Query: 126 AIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV--KRWSNEV 183
A+R + I + + L++ + D++P V A V L ++V + + + +
Sbjct: 106 AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDTL 165
Query: 184 QEAVQSRAALVQFHALALLHQIRQN---------DRLAVSKLVTSLTRGTVRSPLAQCLL 234
++ + +V + +A L +I ++ +++KL+T+L T AQ +
Sbjct: 166 KDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECT---EWAQIFI 222
Query: 235 I----RYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELT 290
+ Y + REA + P L H V+ A + + + + +++L
Sbjct: 223 LDCLGNYMPKDDREAQSICERVTPR-------LSHANSAVVLSAVKVLMKFMEMLSKDLD 275
Query: 291 PAITVLQ------LFLSSSKPVLRFAAVRTLN--------------KSLISDQNRSXXXX 330
T+L+ + L S++P ++ +R +N K N
Sbjct: 276 YYATLLKKLAPPLVTLLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVK 335
Query: 331 XXXX--XXKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388
+ +++++ +++ ++ + +++ +F V AI +K ++ L
Sbjct: 336 LEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTL 395
Query: 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGT 448
++++ + + ++AIV I + R P+ E+ + LCE ++ + ++ +G
Sbjct: 396 LDLIQTKVNYVVQEAIV-VIKDIFRKYPNKYESVIATLCENLDSDDEPEARAAMIWIVGE 454
Query: 449 EGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAK-FGAMVDALKPRVFVLLRRCLYDG 507
++ + + + + H E+ V+ ++ + K F + V +L D
Sbjct: 455 YAERSDNADELLESFLDGFHDESTQVQLQLLTAIVKLFLKKPTETQELVQQVLSLATQDS 514
Query: 508 DD-EVRDRATLYLNTVGSD 525
D+ ++RDR +Y + +D
Sbjct: 515 DNPDLRDRGYIYWRLLSTD 533
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 121/557 (21%), Positives = 211/557 (37%), Gaps = 82/557 (14%)
Query: 38 DPQLDPRRCSQVITKLLY--LLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIK 95
D LD + + KLL+ LL F +EA + + + + IG YL I
Sbjct: 47 DKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLL--SSNRYTEKQIG-----YLFIS 99
Query: 96 ELSPSADEVI-IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIV--D 152
L S E+I ++ +++ D+ S+ + A+ + + + + + +V D
Sbjct: 100 VLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGD 159
Query: 153 KNPVVASAALVSGIHLLQTTPEIVKR--WSNEVQEAVQSRAALVQFHALALLHQIRQND- 209
V +A + + L +T+P++V W++ V + + V A +L+ + Q +
Sbjct: 160 TMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219
Query: 210 -------RLAVSKLVTSLTRGT----------VRSPLAQCLLIRYTTQVIREAATTQTGD 252
LAVS+L +T + V +P L+R Q
Sbjct: 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL-QCYPPPEDPAVRG 278
Query: 253 RPFYDFLESCLRHKAE--------------MVIFEAARAITELNGVTNRELTPAITVLQL 298
R + LE+ L E V+FEA I + N L A L
Sbjct: 279 R-LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL-LVRACNQLGQ 336
Query: 299 FLSSSKPVLRFAAVR---TLNKSLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQITNFM 355
FL + LR+ A+ TL S S + KT + SV + + M
Sbjct: 337 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAM 396
Query: 356 SDIADEFKIV-----------------VVEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 398
D ++ +IV +V + L K+ + Y ++ + N++R G +
Sbjct: 397 CDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDY 456
Query: 399 EYKKAIVDSIVILI-RDIPDAKENGLLHLCEFIED--CE--FTYLSTQILHFLGT--EGP 451
++ I I+I RD D + + E ++ C + IL G G
Sbjct: 457 VSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD 514
Query: 452 KTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLR--RCLYDGDD 509
S P ++++ HL + RA +ST KF + +K + +LR L + D
Sbjct: 515 PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADV 574
Query: 510 EVRDRATLY--LNTVGS 524
E++ RA Y L+TV S
Sbjct: 575 ELQQRAVEYLRLSTVAS 591
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 121/557 (21%), Positives = 211/557 (37%), Gaps = 82/557 (14%)
Query: 38 DPQLDPRRCSQVITKLLY--LLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIK 95
D LD + + KLL+ LL F +EA + + + + IG YL I
Sbjct: 47 DKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLL--SSNRYTEKQIG-----YLFIS 99
Query: 96 ELSPSADEVI-IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIV--D 152
L S E+I ++ +++ D+ S+ + A+ + + + + + +V D
Sbjct: 100 VLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGD 159
Query: 153 KNPVVASAALVSGIHLLQTTPEIVKR--WSNEVQEAVQSRAALVQFHALALLHQIRQND- 209
V +A + + L +T+P++V W++ V + + V A +L+ + Q +
Sbjct: 160 TMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219
Query: 210 -------RLAVSKLVTSLTRGT----------VRSPLAQCLLIRYTTQVIREAATTQTGD 252
LAVS+L +T + V +P L+R Q
Sbjct: 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL-QCYPPPEDPAVRG 278
Query: 253 RPFYDFLESCLRHKAE--------------MVIFEAARAITELNGVTNRELTPAITVLQL 298
R + LE+ L E V+FEA I + N L A L
Sbjct: 279 R-LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL-LVRACNQLGQ 336
Query: 299 FLSSSKPVLRFAAVR---TLNKSLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQITNFM 355
FL + LR+ A+ TL S S + KT + SV + + M
Sbjct: 337 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAM 396
Query: 356 SDIADEFKIV-----------------VVEAIRSLCLKFPLKYRSLMNFLSNILREEGGF 398
D ++ +IV +V + L K+ + Y ++ + N++R G +
Sbjct: 397 CDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDY 456
Query: 399 EYKKAIVDSIVILI-RDIPDAKENGLLHLCEFIED--CE--FTYLSTQILHFLGT--EGP 451
++ I I+I RD D + + E ++ C + IL G G
Sbjct: 457 VSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD 514
Query: 452 KTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLR--RCLYDGDD 509
S P ++++ HL + RA +ST KF + +K + +LR L + D
Sbjct: 515 PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADV 574
Query: 510 EVRDRATLY--LNTVGS 524
E++ RA Y L+TV S
Sbjct: 575 ELQQRAVEYLRLSTVAS 591
>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|7AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|A Chain A, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|B Chain B, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|1TAR|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAR|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1OXO|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1OXO|B Chain B, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1IVR|A Chain A, Structure Of Aspartate Aminotransferase
pdb|1AMA|A Chain A, Domain Closure In Mitochondrial Aspartate Aminotransferase
pdb|1MAP|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1MAQ|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1OXP|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Closed
Conformation
Length = 401
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI--VDKNPVVASAAL 162
++++ S K+M + RA A V+CR D ++E LK I + NP + A +
Sbjct: 242 VVLSQSYAKNMGLYGE--RAGAFTVICR--DAEEAKRVESQLKILIRPMYSNPPMNGARI 297
Query: 163 VSGIHLLQTTPEIVKRWSNEVQ 184
S L+ TPE+ K W EV+
Sbjct: 298 AS---LILNTPELRKEWLVEVK 316
>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKA|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKB|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKC|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate- Binding Lysine Residue
Length = 401
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 123 RANAIRVLCRITDGTLLTQIERYLKQAI--VDKNPVVASAALVSGIHLLQTTPEIVKRWS 180
RA A V+CR D ++E LK I + NP + A + S L+ TPE+ K W
Sbjct: 258 RAGAFTVICR--DAEEAKRVESQLKILIRPMYSNPPMNGARIAS---LILNTPELRKEWL 312
Query: 181 NEVQ 184
EV+
Sbjct: 313 VEVK 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,107,005
Number of Sequences: 62578
Number of extensions: 826222
Number of successful extensions: 1846
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1824
Number of HSP's gapped (non-prelim): 24
length of query: 869
length of database: 14,973,337
effective HSP length: 107
effective length of query: 762
effective length of database: 8,277,491
effective search space: 6307448142
effective search space used: 6307448142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)