Query 002900
Match_columns 869
No_of_seqs 228 out of 1331
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1078 Vesicle coat complex C 100.0 2E-143 5E-148 1193.7 69.6 843 6-867 2-865 (865)
2 COG5240 SEC21 Vesicle coat com 100.0 4E-113 8E-118 917.1 58.2 832 19-865 13-896 (898)
3 KOG1077 Vesicle coat complex A 100.0 6.6E-96 1E-100 800.8 58.2 794 29-867 36-935 (938)
4 PTZ00429 beta-adaptin; Provisi 100.0 2.6E-75 5.7E-80 686.7 51.3 501 19-540 23-558 (746)
5 KOG1058 Vesicle coat complex C 100.0 2.8E-75 6.2E-80 643.5 42.1 758 32-867 24-939 (948)
6 KOG1062 Vesicle coat complex A 100.0 1.5E-69 3.2E-74 605.6 45.1 485 29-525 30-582 (866)
7 KOG1060 Vesicle coat complex A 100.0 4.5E-65 9.8E-70 565.4 59.4 482 30-524 37-571 (968)
8 PF01602 Adaptin_N: Adaptin N 100.0 6.8E-67 1.5E-71 616.7 36.2 488 26-524 2-524 (526)
9 KOG1061 Vesicle coat complex A 100.0 2.8E-60 6.1E-65 534.4 34.7 501 19-541 4-539 (734)
10 KOG1059 Vesicle coat complex A 100.0 6E-54 1.3E-58 473.4 36.6 484 28-523 36-576 (877)
11 COG5096 Vesicle coat complex, 100.0 4.4E-50 9.6E-55 461.5 39.8 670 27-839 17-749 (757)
12 PF08752 COP-gamma_platf: Coat 100.0 1.4E-37 3E-42 293.9 13.2 149 602-751 2-151 (151)
13 PF14806 Coatomer_b_Cpla: Coat 99.7 1.5E-16 3.2E-21 145.9 12.2 118 741-862 4-124 (129)
14 PF02296 Alpha_adaptin_C: Alph 99.6 6E-15 1.3E-19 134.7 11.4 106 754-865 1-113 (113)
15 PF01602 Adaptin_N: Adaptin N 99.4 8.7E-10 1.9E-14 130.5 35.1 414 85-516 26-475 (526)
16 PTZ00429 beta-adaptin; Provisi 99.2 6.9E-08 1.5E-12 115.8 35.1 370 111-491 37-437 (746)
17 PRK09687 putative lyase; Provi 99.1 1.5E-08 3.3E-13 108.9 23.7 238 106-405 23-274 (280)
18 PRK13800 putative oxidoreducta 99.0 4.4E-08 9.6E-13 122.3 26.5 258 107-405 622-891 (897)
19 PRK09687 putative lyase; Provi 98.9 3.5E-07 7.5E-12 98.5 23.0 248 76-371 29-278 (280)
20 PLN03200 cellulose synthase-in 98.9 3.1E-05 6.6E-10 100.4 43.6 495 25-524 31-723 (2102)
21 PRK13800 putative oxidoreducta 98.8 9.4E-07 2E-11 110.5 27.9 259 75-372 626-896 (897)
22 PLN03200 cellulose synthase-in 98.7 1.5E-05 3.3E-10 103.1 32.8 407 75-485 409-906 (2102)
23 KOG1078 Vesicle coat complex C 98.6 4.2E-06 9.1E-11 96.5 22.8 438 19-515 91-559 (865)
24 KOG1060 Vesicle coat complex A 98.5 5.6E-05 1.2E-09 87.3 25.9 260 115-384 44-359 (968)
25 KOG2171 Karyopherin (importin) 98.4 0.00075 1.6E-08 81.9 36.2 437 79-524 13-549 (1075)
26 PF10508 Proteasom_PSMB: Prote 98.4 0.00029 6.3E-09 82.6 31.2 334 105-472 76-447 (503)
27 PF07718 Coatamer_beta_C: Coat 98.4 1.1E-06 2.3E-11 82.1 7.8 92 605-714 41-134 (140)
28 PF12717 Cnd1: non-SMC mitotic 98.3 6.1E-06 1.3E-10 83.0 12.8 100 119-218 1-104 (178)
29 KOG1058 Vesicle coat complex C 98.3 0.0001 2.2E-09 84.9 23.3 333 99-452 13-426 (948)
30 KOG0166 Karyopherin (importin) 98.3 0.0003 6.4E-09 79.9 25.3 124 253-376 236-394 (514)
31 PF14764 SPG48: AP-5 complex s 98.2 0.0023 5E-08 71.9 31.9 126 400-525 284-447 (459)
32 KOG2171 Karyopherin (importin) 98.2 0.0018 3.9E-08 78.7 33.0 362 110-487 122-549 (1075)
33 KOG1062 Vesicle coat complex A 98.2 0.0011 2.4E-08 77.3 28.9 265 136-415 102-416 (866)
34 KOG0212 Uncharacterized conser 98.2 0.0017 3.6E-08 73.1 28.6 330 76-412 6-405 (675)
35 PF10508 Proteasom_PSMB: Prote 98.0 0.0028 6.1E-08 74.4 28.3 265 48-317 56-363 (503)
36 KOG1059 Vesicle coat complex A 98.0 0.027 5.9E-07 65.4 33.9 266 138-413 106-401 (877)
37 KOG1061 Vesicle coat complex A 97.8 0.0019 4E-08 75.6 21.8 369 50-434 65-470 (734)
38 KOG0213 Splicing factor 3b, su 97.8 0.036 7.8E-07 64.4 30.7 441 33-517 642-1135(1172)
39 KOG1824 TATA-binding protein-i 97.8 0.013 2.7E-07 69.8 27.6 173 353-539 864-1046(1233)
40 KOG2023 Nuclear transport rece 97.8 0.0074 1.6E-07 69.2 24.7 404 80-502 58-521 (885)
41 KOG0212 Uncharacterized conser 97.7 0.053 1.2E-06 61.4 29.7 375 57-441 72-506 (675)
42 COG1413 FOG: HEAT repeat [Ener 97.7 0.012 2.5E-07 65.6 24.5 195 71-317 44-239 (335)
43 PF14807 AP4E_app_platf: Adapt 97.6 0.00056 1.2E-08 61.3 10.3 97 756-867 1-100 (104)
44 KOG1020 Sister chromatid cohes 97.6 0.072 1.6E-06 66.7 31.4 128 83-210 793-924 (1692)
45 PF13646 HEAT_2: HEAT repeats; 97.6 0.00027 6E-09 61.8 8.4 84 109-202 2-87 (88)
46 COG1413 FOG: HEAT repeat [Ener 97.6 0.023 4.9E-07 63.2 25.8 131 63-208 67-210 (335)
47 COG5096 Vesicle coat complex, 97.6 0.02 4.4E-07 68.3 25.4 134 50-187 71-209 (757)
48 KOG1824 TATA-binding protein-i 97.5 0.12 2.5E-06 62.0 29.8 140 29-170 735-886 (1233)
49 KOG2023 Nuclear transport rece 97.5 0.2 4.3E-06 58.0 30.7 262 35-297 282-613 (885)
50 KOG0213 Splicing factor 3b, su 97.5 0.18 3.9E-06 58.9 30.3 265 253-525 758-1066(1172)
51 PF09066 B2-adapt-app_C: Beta2 97.5 0.00052 1.1E-08 63.6 8.7 101 761-867 10-110 (114)
52 PF05804 KAP: Kinesin-associat 97.4 0.095 2.1E-06 63.1 28.6 276 108-413 292-607 (708)
53 KOG4224 Armadillo repeat prote 97.3 0.013 2.8E-07 62.9 18.0 291 76-394 91-428 (550)
54 KOG0166 Karyopherin (importin) 97.2 0.17 3.6E-06 58.1 26.2 158 48-206 85-265 (514)
55 COG5240 SEC21 Vesicle coat com 97.2 0.061 1.3E-06 60.9 22.0 265 206-476 255-544 (898)
56 KOG1241 Karyopherin (importin) 97.2 0.29 6.3E-06 57.6 27.9 424 42-504 230-732 (859)
57 TIGR02270 conserved hypothetic 97.2 0.11 2.4E-06 59.1 24.3 199 107-375 87-296 (410)
58 KOG1077 Vesicle coat complex A 97.1 0.9 2E-05 53.2 37.2 352 82-445 55-468 (938)
59 PF12348 CLASP_N: CLASP N term 97.0 0.0041 8.8E-08 65.1 10.6 172 37-208 15-207 (228)
60 COG5181 HSH155 U2 snRNP splice 97.0 0.37 8.1E-06 55.3 25.8 126 80-206 256-389 (975)
61 TIGR02270 conserved hypothetic 97.0 0.087 1.9E-06 59.8 21.4 217 152-411 66-294 (410)
62 KOG0414 Chromosome condensatio 96.9 0.0025 5.3E-08 77.4 9.0 150 67-220 916-1076(1251)
63 KOG2259 Uncharacterized conser 96.9 0.35 7.5E-06 56.1 25.3 261 252-517 196-544 (823)
64 cd00020 ARM Armadillo/beta-cat 96.7 0.0085 1.8E-07 55.1 8.6 100 107-206 8-119 (120)
65 KOG0211 Protein phosphatase 2A 96.6 1.5 3.2E-05 53.5 29.1 383 133-523 229-663 (759)
66 KOG2259 Uncharacterized conser 96.6 0.015 3.3E-07 66.8 11.8 224 289-525 196-476 (823)
67 PF05804 KAP: Kinesin-associat 96.3 1.9 4.2E-05 52.2 27.3 319 191-524 262-649 (708)
68 COG5064 SRP1 Karyopherin (impo 96.2 0.71 1.5E-05 49.5 20.1 267 72-373 73-396 (526)
69 PF13646 HEAT_2: HEAT repeats; 96.2 0.013 2.8E-07 51.1 6.3 83 75-166 4-88 (88)
70 PF12717 Cnd1: non-SMC mitotic 96.1 0.14 3E-06 51.5 14.2 92 359-452 1-93 (178)
71 PF04826 Arm_2: Armadillo-like 95.9 0.36 7.8E-06 51.3 16.9 90 117-206 24-123 (254)
72 KOG0414 Chromosome condensatio 95.8 3.6 7.9E-05 51.2 26.1 142 69-210 269-431 (1251)
73 PF05918 API5: Apoptosis inhib 95.7 1.9 4.2E-05 50.4 23.1 40 354-393 276-316 (556)
74 KOG1242 Protein containing ada 95.7 3.7 8.1E-05 47.8 25.0 257 115-379 143-448 (569)
75 KOG1241 Karyopherin (importin) 95.6 7 0.00015 46.6 30.6 320 50-395 348-731 (859)
76 PF04826 Arm_2: Armadillo-like 95.6 0.28 6.1E-06 52.0 14.5 127 319-449 62-203 (254)
77 PF13513 HEAT_EZ: HEAT-like re 95.4 0.042 9E-07 43.4 5.9 49 120-168 1-55 (55)
78 PF12348 CLASP_N: CLASP N term 95.4 0.067 1.4E-06 55.9 9.0 121 60-181 85-217 (228)
79 KOG1242 Protein containing ada 95.3 7.7 0.00017 45.3 25.6 137 178-317 295-441 (569)
80 PF12755 Vac14_Fab1_bd: Vacuol 95.2 0.16 3.4E-06 45.5 9.4 67 135-201 21-91 (97)
81 PF02985 HEAT: HEAT repeat; I 95.0 0.027 5.7E-07 38.9 3.2 29 142-170 1-29 (31)
82 PF13513 HEAT_EZ: HEAT-like re 94.8 0.088 1.9E-06 41.5 6.2 50 155-204 1-54 (55)
83 PF05918 API5: Apoptosis inhib 94.8 2 4.3E-05 50.3 19.4 61 153-213 34-94 (556)
84 COG5181 HSH155 U2 snRNP splice 94.6 12 0.00026 43.6 25.3 320 135-516 598-939 (975)
85 KOG0413 Uncharacterized conser 94.5 12 0.00027 45.7 24.8 118 404-521 951-1070(1529)
86 KOG4224 Armadillo repeat prote 94.5 4.8 0.0001 43.9 19.6 387 15-488 14-447 (550)
87 cd00020 ARM Armadillo/beta-cat 94.4 0.18 3.9E-06 46.1 8.3 68 142-209 8-80 (120)
88 PF10363 DUF2435: Protein of u 94.3 0.1 2.2E-06 46.2 5.9 73 109-181 6-84 (92)
89 COG5098 Chromosome condensatio 94.3 0.37 8E-06 56.0 11.7 129 82-210 274-418 (1128)
90 KOG1240 Protein kinase contain 94.3 0.9 2E-05 56.2 15.5 231 107-356 463-745 (1431)
91 COG5098 Chromosome condensatio 94.3 0.14 3.1E-06 59.2 8.3 137 71-210 893-1040(1128)
92 KOG0567 HEAT repeat-containing 93.9 9.9 0.00021 40.0 20.0 229 47-310 20-270 (289)
93 KOG2973 Uncharacterized conser 93.9 7.9 0.00017 41.5 19.5 78 110-190 7-94 (353)
94 KOG0915 Uncharacterized conser 93.7 7.8 0.00017 49.7 22.0 288 116-432 1008-1327(1702)
95 KOG0915 Uncharacterized conser 93.2 16 0.00035 47.0 23.5 82 140-221 817-909 (1702)
96 smart00638 LPD_N Lipoprotein N 93.0 1.2 2.6E-05 53.4 14.1 100 107-208 447-546 (574)
97 KOG2062 26S proteasome regulat 92.8 20 0.00043 42.9 22.2 42 347-388 555-597 (929)
98 COG5064 SRP1 Karyopherin (impo 92.6 7.1 0.00015 42.2 17.0 210 111-325 162-406 (526)
99 PF12830 Nipped-B_C: Sister ch 91.8 0.76 1.6E-05 46.5 8.7 102 109-210 11-125 (187)
100 KOG2025 Chromosome condensatio 91.7 35 0.00077 40.7 26.8 64 254-317 126-190 (892)
101 KOG1020 Sister chromatid cohes 91.3 57 0.0012 42.3 29.8 124 136-266 808-940 (1692)
102 PF12719 Cnd3: Nuclear condens 91.1 11 0.00023 41.3 17.4 148 344-516 24-177 (298)
103 smart00638 LPD_N Lipoprotein N 90.9 8.2 0.00018 46.4 17.7 191 325-526 340-545 (574)
104 PF01347 Vitellogenin_N: Lipop 90.5 2.3 5.1E-05 51.5 12.8 101 105-207 489-589 (618)
105 KOG2025 Chromosome condensatio 90.3 47 0.001 39.7 23.1 129 38-167 54-190 (892)
106 KOG0946 ER-Golgi vesicle-tethe 90.0 53 0.0011 39.8 31.1 135 80-217 33-204 (970)
107 PF08713 DNA_alkylation: DNA a 89.7 1.6 3.5E-05 44.9 9.1 148 75-230 56-205 (213)
108 KOG1240 Protein kinase contain 89.5 13 0.00028 46.7 17.3 95 318-413 585-685 (1431)
109 COG5215 KAP95 Karyopherin (imp 89.4 49 0.0011 38.6 24.1 122 253-394 596-730 (858)
110 PF14796 AP3B1_C: Clathrin-ada 88.8 0.67 1.4E-05 44.4 4.9 66 637-704 73-141 (145)
111 KOG1525 Sister chromatid cohes 88.3 95 0.0021 40.5 26.8 195 329-525 240-473 (1266)
112 KOG1293 Proteins containing ar 88.2 63 0.0014 38.3 22.3 217 113-395 338-577 (678)
113 KOG4413 26S proteasome regulat 88.0 44 0.00094 36.3 26.2 116 357-488 315-440 (524)
114 KOG4199 Uncharacterized conser 88.0 45 0.00097 36.4 21.0 262 105-385 76-369 (461)
115 COG5116 RPN2 26S proteasome re 87.3 7.8 0.00017 44.6 12.6 31 348-378 553-584 (926)
116 KOG1949 Uncharacterized conser 86.7 20 0.00043 42.6 15.6 82 105-186 173-270 (1005)
117 KOG1517 Guanine nucleotide bin 85.5 4.5 9.8E-05 49.7 10.1 141 67-207 509-671 (1387)
118 PF12719 Cnd3: Nuclear condens 85.3 41 0.00089 36.6 17.2 111 253-375 26-143 (298)
119 KOG0413 Uncharacterized conser 84.9 43 0.00093 41.3 17.5 129 120-268 945-1077(1529)
120 KOG2062 26S proteasome regulat 84.8 13 0.00027 44.4 13.0 93 113-209 526-620 (929)
121 KOG1222 Kinesin associated pro 84.5 81 0.0018 36.0 21.3 67 142-210 346-416 (791)
122 PF02883 Alpha_adaptinC2: Adap 84.1 12 0.00027 34.2 10.7 65 638-705 11-79 (115)
123 COG5218 YCG1 Chromosome conden 83.8 56 0.0012 38.2 17.2 94 421-515 91-190 (885)
124 PF12460 MMS19_C: RNAPII trans 83.6 62 0.0013 37.1 18.5 180 343-522 186-392 (415)
125 PF14676 FANCI_S2: FANCI solen 83.6 8 0.00017 37.9 9.5 113 405-517 39-154 (158)
126 KOG2160 Armadillo/beta-catenin 83.3 4.3 9.4E-05 44.4 8.2 95 114-208 132-241 (342)
127 PF08713 DNA_alkylation: DNA a 82.8 2.8 6.1E-05 43.1 6.5 73 110-182 124-196 (213)
128 KOG1949 Uncharacterized conser 82.3 17 0.00037 43.1 12.6 139 136-283 168-331 (1005)
129 KOG2956 CLIP-associating prote 82.2 8.9 0.00019 43.4 10.1 175 24-206 282-476 (516)
130 KOG1943 Beta-tubulin folding c 82.1 1.5E+02 0.0033 37.4 29.9 425 75-518 343-831 (1133)
131 KOG0567 HEAT repeat-containing 82.1 7.7 0.00017 40.8 9.0 60 108-169 189-248 (289)
132 PF12755 Vac14_Fab1_bd: Vacuol 81.6 7 0.00015 34.9 7.6 66 458-523 27-96 (97)
133 KOG2956 CLIP-associating prote 81.6 65 0.0014 36.8 16.5 158 360-522 302-475 (516)
134 KOG1248 Uncharacterized conser 81.2 1.7E+02 0.0037 37.3 24.8 103 104-206 651-766 (1176)
135 KOG2160 Armadillo/beta-catenin 81.0 17 0.00036 40.0 11.5 96 354-449 132-238 (342)
136 COG5218 YCG1 Chromosome conden 80.9 1.2E+02 0.0027 35.6 22.5 95 39-133 60-159 (885)
137 KOG1293 Proteins containing ar 80.7 91 0.002 37.1 17.8 108 113-220 426-546 (678)
138 PF14664 RICTOR_N: Rapamycin-i 78.5 1E+02 0.0022 34.8 17.3 74 346-421 108-183 (371)
139 PF10363 DUF2435: Protein of u 78.3 17 0.00038 32.1 8.9 76 146-221 8-87 (92)
140 cd00256 VATPase_H VATPase_H, r 78.0 1.4E+02 0.003 34.4 23.8 66 421-486 353-424 (429)
141 KOG1248 Uncharacterized conser 77.8 2.1E+02 0.0046 36.5 27.9 101 71-174 139-257 (1176)
142 PF13251 DUF4042: Domain of un 77.7 14 0.00029 37.2 9.0 121 86-206 18-173 (182)
143 PF02985 HEAT: HEAT repeat; I 76.7 2 4.3E-05 29.4 2.0 26 108-133 2-27 (31)
144 PF01347 Vitellogenin_N: Lipop 75.8 25 0.00054 42.6 12.6 191 324-526 377-589 (618)
145 KOG4653 Uncharacterized conser 75.3 41 0.00088 41.1 13.2 64 114-177 735-804 (982)
146 KOG4199 Uncharacterized conser 75.3 1.3E+02 0.0029 32.9 17.0 254 264-521 117-400 (461)
147 smart00809 Alpha_adaptinC2 Ada 75.2 45 0.00097 29.8 11.1 62 642-706 11-74 (104)
148 PF12231 Rif1_N: Rap1-interact 74.0 1.6E+02 0.0035 33.2 17.9 199 79-277 2-297 (372)
149 PF10633 NPCBM_assoc: NPCBM-as 73.7 12 0.00026 31.7 6.5 56 649-707 6-62 (78)
150 KOG0168 Putative ubiquitin fus 73.6 62 0.0013 39.6 14.1 125 323-449 180-321 (1051)
151 PF12460 MMS19_C: RNAPII trans 72.6 1.8E+02 0.004 33.3 27.8 180 320-503 199-411 (415)
152 KOG1525 Sister chromatid cohes 71.7 3.3E+02 0.0071 35.8 25.5 131 382-513 218-355 (1266)
153 cd06561 AlkD_like A new struct 71.6 6.4 0.00014 39.8 5.2 76 144-220 108-183 (197)
154 cd03572 ENTH_epsin_related ENT 71.2 7.7 0.00017 36.2 5.0 47 135-181 32-78 (122)
155 PF13251 DUF4042: Domain of un 69.4 1.1E+02 0.0024 30.7 13.2 115 185-315 47-169 (182)
156 cd06561 AlkD_like A new struct 68.9 71 0.0015 32.1 12.3 71 115-185 114-185 (197)
157 PF05004 IFRD: Interferon-rela 68.3 1.9E+02 0.0041 31.7 17.7 163 357-522 54-255 (309)
158 PF08506 Cse1: Cse1; InterPro 67.9 16 0.00034 41.2 7.6 60 106-165 305-370 (370)
159 COG1470 Predicted membrane pro 67.6 16 0.00034 41.5 7.3 59 648-709 397-456 (513)
160 KOG1243 Protein kinase [Genera 67.3 16 0.00034 43.5 7.6 31 139-169 367-397 (690)
161 PF03130 HEAT_PBS: PBS lyase H 66.6 10 0.00022 25.1 3.5 26 122-147 1-26 (27)
162 PF11698 V-ATPase_H_C: V-ATPas 66.3 6.6 0.00014 36.4 3.5 66 421-486 43-114 (119)
163 PF14961 BROMI: Broad-minded p 66.2 1.6E+02 0.0035 37.7 16.0 70 457-526 160-234 (1296)
164 PF12765 Cohesin_HEAT: HEAT re 66.1 8 0.00017 28.7 3.3 24 140-163 17-40 (42)
165 COG5116 RPN2 26S proteasome re 65.9 47 0.001 38.7 10.6 91 112-208 522-616 (926)
166 KOG2005 26S proteasome regulat 65.0 62 0.0013 38.5 11.5 96 120-220 622-718 (878)
167 KOG4535 HEAT and armadillo rep 64.9 16 0.00035 41.4 6.7 126 80-207 22-179 (728)
168 PF00790 VHS: VHS domain; Int 64.7 42 0.00092 32.0 9.0 86 80-165 15-113 (140)
169 cd03568 VHS_STAM VHS domain fa 64.5 72 0.0016 30.7 10.5 115 266-396 16-132 (144)
170 PF05004 IFRD: Interferon-rela 64.2 2.3E+02 0.0049 31.1 15.7 60 107-166 87-156 (309)
171 PF05536 Neurochondrin: Neuroc 63.5 2E+02 0.0043 34.3 16.1 30 460-489 186-215 (543)
172 PF11698 V-ATPase_H_C: V-ATPas 63.2 15 0.00033 34.0 5.2 63 107-169 44-114 (119)
173 PF08167 RIX1: rRNA processing 62.3 27 0.00058 34.5 7.3 118 67-186 22-159 (165)
174 KOG0168 Putative ubiquitin fus 62.1 3.9E+02 0.0085 33.1 18.3 169 107-281 168-362 (1051)
175 PF01603 B56: Protein phosphat 61.8 1.3E+02 0.0028 34.4 13.8 143 289-431 107-265 (409)
176 KOG1820 Microtubule-associated 61.6 1.5E+02 0.0033 36.9 14.8 200 20-221 241-458 (815)
177 PF05327 RRN3: RNA polymerase 61.6 1.2E+02 0.0026 36.4 13.8 41 471-511 177-217 (563)
178 KOG1943 Beta-tubulin folding c 61.2 4.5E+02 0.0097 33.5 27.3 72 136-207 336-409 (1133)
179 KOG1822 Uncharacterized conser 59.7 3.9E+02 0.0084 36.2 18.1 103 104-206 874-987 (2067)
180 cd03569 VHS_Hrs_Vps27p VHS dom 58.5 1.2E+02 0.0025 29.2 10.7 113 267-396 21-136 (142)
181 COG5215 KAP95 Karyopherin (imp 57.9 3.8E+02 0.0083 31.7 24.4 86 123-208 348-438 (858)
182 PF00790 VHS: VHS domain; Int 57.5 1.8E+02 0.0038 27.8 11.9 79 291-379 42-122 (140)
183 PF10274 ParcG: Parkin co-regu 56.4 24 0.00052 35.4 5.7 48 138-185 77-124 (183)
184 PF02854 MIF4G: MIF4G domain; 56.3 2E+02 0.0042 28.7 12.9 60 332-391 4-63 (209)
185 PF12074 DUF3554: Domain of un 56.3 3.2E+02 0.0069 30.3 17.5 81 89-170 6-90 (339)
186 cd03567 VHS_GGA VHS domain fam 56.1 1.2E+02 0.0026 29.0 10.3 118 265-396 16-135 (139)
187 KOG2933 Uncharacterized conser 55.9 29 0.00062 37.5 6.4 100 70-170 129-234 (334)
188 cd03561 VHS VHS domain family; 55.4 97 0.0021 29.3 9.6 99 266-380 16-117 (133)
189 KOG1967 DNA repair/transcripti 55.0 76 0.0016 39.2 10.3 178 118-334 809-1018(1030)
190 KOG1517 Guanine nucleotide bin 54.9 56 0.0012 40.8 9.3 134 39-173 567-735 (1387)
191 PF14664 RICTOR_N: Rapamycin-i 54.1 83 0.0018 35.5 10.2 97 79-177 34-144 (371)
192 KOG2140 Uncharacterized conser 52.3 65 0.0014 37.2 8.7 123 329-452 165-312 (739)
193 KOG1243 Protein kinase [Genera 51.1 88 0.0019 37.6 9.9 101 71-171 331-438 (690)
194 KOG0211 Protein phosphatase 2A 50.3 5.9E+02 0.013 31.6 29.5 341 107-451 238-625 (759)
195 PF12031 DUF3518: Domain of un 50.3 14 0.00031 38.4 3.1 24 325-348 138-162 (257)
196 cd03569 VHS_Hrs_Vps27p VHS dom 48.9 83 0.0018 30.2 8.0 62 101-165 36-109 (142)
197 KOG4653 Uncharacterized conser 48.7 1E+02 0.0022 37.8 10.1 65 106-170 847-918 (982)
198 PF08167 RIX1: rRNA processing 47.9 1.3E+02 0.0028 29.6 9.4 72 107-178 26-108 (165)
199 PF00514 Arm: Armadillo/beta-c 46.8 31 0.00067 25.0 3.7 28 142-169 13-40 (41)
200 KOG2753 Uncharacterized conser 46.3 1.9E+02 0.004 31.8 10.6 70 402-489 64-137 (378)
201 cd03561 VHS VHS domain family; 46.2 84 0.0018 29.7 7.6 76 91-166 21-108 (133)
202 PF06685 DUF1186: Protein of u 45.9 2.4E+02 0.0053 29.8 11.5 118 172-301 33-160 (249)
203 KOG4413 26S proteasome regulat 45.6 4.5E+02 0.0097 28.9 22.1 132 80-212 52-205 (524)
204 smart00567 EZ_HEAT E-Z type HE 45.3 22 0.00048 23.9 2.5 26 121-146 2-27 (30)
205 KOG2759 Vacuolar H+-ATPase V1 43.4 5.5E+02 0.012 29.3 22.9 66 420-485 365-436 (442)
206 PF11707 Npa1: Ribosome 60S bi 41.9 5.2E+02 0.011 28.6 17.4 42 180-221 58-100 (330)
207 PF14631 FancD2: Fanconi anaem 41.4 1.1E+03 0.023 32.0 20.7 102 252-357 190-292 (1426)
208 PF03224 V-ATPase_H_N: V-ATPas 40.6 4.4E+02 0.0095 28.8 13.3 57 319-375 113-179 (312)
209 smart00543 MIF4G Middle domain 40.0 3.8E+02 0.0083 26.5 15.6 52 339-391 11-62 (200)
210 KOG2933 Uncharacterized conser 39.5 2.3E+02 0.0051 30.8 10.1 88 88-176 71-164 (334)
211 KOG4500 Rho/Rac GTPase guanine 38.7 5.3E+02 0.011 29.5 12.9 158 50-208 293-476 (604)
212 cd03567 VHS_GGA VHS domain fam 38.5 2.1E+02 0.0045 27.4 8.9 56 160-215 20-75 (139)
213 KOG1820 Microtubule-associated 38.1 4.9E+02 0.011 32.6 14.0 80 136-215 248-332 (815)
214 PF14500 MMS19_N: Dos2-interac 37.0 5.5E+02 0.012 27.4 19.6 75 110-185 3-87 (262)
215 smart00288 VHS Domain present 36.5 1.8E+02 0.0039 27.5 8.1 76 90-165 20-106 (133)
216 PF12830 Nipped-B_C: Sister ch 36.4 4.6E+02 0.0099 26.3 13.9 50 259-311 13-65 (187)
217 cd00197 VHS_ENTH_ANTH VHS, ENT 36.3 1.2E+02 0.0026 27.6 6.8 70 146-215 5-74 (115)
218 PF14676 FANCI_S2: FANCI solen 36.3 2.1E+02 0.0046 28.0 8.7 45 167-211 44-88 (158)
219 PF08631 SPO22: Meiosis protei 36.1 5.7E+02 0.012 27.3 15.4 61 325-386 121-181 (278)
220 PF12530 DUF3730: Protein of u 35.8 5.3E+02 0.011 26.9 15.2 24 407-430 107-130 (234)
221 PF11838 ERAP1_C: ERAP1-like C 35.8 5.9E+02 0.013 27.5 13.7 71 340-412 17-87 (324)
222 COG5110 RPN1 26S proteasome re 34.9 1.5E+02 0.0031 34.7 8.1 92 124-220 627-719 (881)
223 PF12074 DUF3554: Domain of un 34.7 6.6E+02 0.014 27.7 22.9 86 121-206 2-89 (339)
224 PF08569 Mo25: Mo25-like; Int 34.1 6.9E+02 0.015 27.8 13.5 146 102-278 95-278 (335)
225 KOG3723 PH domain protein Melt 33.6 8.7E+02 0.019 28.7 16.7 99 368-468 184-284 (851)
226 PF09450 DUF2019: Domain of un 33.2 75 0.0016 28.8 4.5 38 145-185 51-88 (106)
227 COG5593 Nucleic-acid-binding p 33.1 3.2E+02 0.0069 31.8 10.3 146 293-446 88-252 (821)
228 KOG2011 Sister chromatid cohes 32.3 6.5E+02 0.014 32.3 13.7 57 356-413 297-355 (1048)
229 smart00288 VHS Domain present 32.0 3.6E+02 0.0078 25.4 9.4 18 361-378 97-114 (133)
230 PF10274 ParcG: Parkin co-regu 31.9 1.4E+02 0.0031 30.0 6.8 73 79-151 47-127 (183)
231 cd03565 VHS_Tom1 VHS domain fa 30.9 4.8E+02 0.01 24.9 10.6 37 359-396 99-137 (141)
232 PF12530 DUF3730: Protein of u 30.0 6.5E+02 0.014 26.2 16.4 116 94-209 25-153 (234)
233 COG5101 CRM1 Importin beta-rel 30.0 2.3E+02 0.005 33.7 8.7 160 348-522 463-644 (1053)
234 PF14500 MMS19_N: Dos2-interac 29.9 7.1E+02 0.015 26.6 16.2 22 185-206 6-27 (262)
235 cd07064 AlkD_like_1 A new stru 29.6 1.1E+02 0.0023 31.5 5.8 137 76-220 52-192 (208)
236 KOG2137 Protein kinase [Signal 29.5 7E+02 0.015 30.4 12.9 58 112-169 395-457 (700)
237 PF12765 Cohesin_HEAT: HEAT re 29.2 62 0.0013 24.0 2.9 38 164-201 2-41 (42)
238 PF13981 SopA: SopA-like centr 29.1 3.3E+02 0.0072 25.9 8.4 54 472-525 67-125 (135)
239 cd07064 AlkD_like_1 A new stru 28.9 6.4E+02 0.014 25.8 12.5 40 141-180 150-189 (208)
240 KOG4500 Rho/Rac GTPase guanine 28.9 9.4E+02 0.02 27.7 22.5 137 70-206 223-389 (604)
241 cd03568 VHS_STAM VHS domain fa 28.4 3.1E+02 0.0067 26.4 8.3 64 140-203 36-106 (144)
242 cd08050 TAF6 TATA Binding Prot 28.0 6.8E+02 0.015 27.9 12.2 139 67-206 175-339 (343)
243 KOG2213 Apoptosis inhibitor 5/ 28.0 9.2E+02 0.02 27.3 21.1 69 285-355 37-105 (460)
244 PF14631 FancD2: Fanconi anaem 27.8 1.7E+03 0.036 30.2 20.1 78 318-395 442-522 (1426)
245 PF14228 MOR2-PAG1_mid: Cell m 26.4 1.6E+03 0.034 29.5 27.3 46 138-186 193-238 (1120)
246 PF11935 DUF3453: Domain of un 26.1 7.8E+02 0.017 25.8 15.5 140 149-301 1-163 (239)
247 KOG0803 Predicted E3 ubiquitin 26.1 1.7E+03 0.037 29.7 16.5 95 113-207 48-153 (1312)
248 KOG4337 Microsomal triglycerid 25.5 1.3E+03 0.027 28.0 23.1 75 111-185 349-425 (896)
249 PF13001 Ecm29: Proteasome sta 25.5 1.2E+03 0.025 27.6 23.7 166 321-490 247-446 (501)
250 PF11701 UNC45-central: Myosin 25.3 1.6E+02 0.0036 28.6 5.9 15 155-169 19-33 (157)
251 KOG2374 Uncharacterized conser 25.2 9E+02 0.02 28.1 12.0 111 269-394 25-143 (661)
252 PF11935 DUF3453: Domain of un 25.1 6.1E+02 0.013 26.6 10.6 51 343-393 111-163 (239)
253 PF09759 Atx10homo_assoc: Spin 24.8 1.7E+02 0.0037 26.4 5.4 61 362-422 2-68 (102)
254 KOG2199 Signal transducing ada 24.3 5.6E+02 0.012 28.9 10.0 103 71-184 9-121 (462)
255 COG5066 SCS2 VAMP-associated p 23.4 3.9E+02 0.0085 27.3 8.0 66 688-782 51-118 (242)
256 COG5657 CSE1 CAS/CSE protein i 23.4 5.9E+02 0.013 31.9 10.9 76 318-414 77-153 (947)
257 PF09624 DUF2393: Protein of u 23.4 2.5E+02 0.0053 27.0 6.7 29 645-674 59-87 (149)
258 PF12054 DUF3535: Domain of un 23.3 1.2E+03 0.026 27.0 21.5 83 328-411 107-195 (441)
259 smart00185 ARM Armadillo/beta- 22.5 1.2E+02 0.0026 21.2 3.4 28 142-169 13-40 (41)
260 KOG2005 26S proteasome regulat 22.3 1.5E+03 0.032 27.7 18.6 65 460-526 642-706 (878)
261 PF06371 Drf_GBD: Diaphanous G 22.3 1.5E+02 0.0033 29.3 5.3 57 268-339 130-186 (187)
262 PF09090 MIF4G_like_2: MIF4G l 22.3 8.4E+02 0.018 25.8 11.1 121 326-450 12-138 (253)
263 PF00514 Arm: Armadillo/beta-c 21.5 1.7E+02 0.0036 21.1 4.0 29 178-206 12-40 (41)
264 PF07571 DUF1546: Protein of u 21.5 3.9E+02 0.0084 23.5 6.9 62 151-215 16-83 (92)
265 PF11614 FixG_C: IG-like fold 21.4 2.2E+02 0.0048 26.0 5.8 69 651-725 34-102 (118)
266 KOG2011 Sister chromatid cohes 21.4 2.3E+02 0.005 36.0 7.3 90 116-205 297-397 (1048)
267 KOG2149 Uncharacterized conser 21.2 1E+03 0.022 26.9 11.5 64 318-381 106-176 (393)
268 PF08324 PUL: PUL domain; Int 21.0 9.8E+02 0.021 25.2 12.1 94 115-208 119-232 (268)
269 KOG2038 CAATT-binding transcri 21.0 1.6E+03 0.036 27.7 21.0 97 110-206 308-408 (988)
270 smart00273 ENTH Epsin N-termin 20.8 4.2E+02 0.0091 24.6 7.6 69 142-210 3-72 (127)
271 PF14225 MOR2-PAG1_C: Cell mor 20.2 1.1E+03 0.023 25.3 16.8 85 325-414 130-218 (262)
272 PLN03076 ARF guanine nucleotid 20.2 1.8E+03 0.038 30.7 15.4 56 359-414 1150-1213(1780)
No 1
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-143 Score=1193.72 Aligned_cols=843 Identities=59% Similarity=0.916 Sum_probs=779.2
Q ss_pred CcCcCccCCCcccCCCccchhhhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCcc
Q 002900 6 VKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIG 85 (869)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~k~~~~qe~r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~ 85 (869)
+|||+|+++ .++||.+++|++++||+|.||++|+++|||+.+|.||+|++.+|++|+..+++++||+++|+|||+|..
T Consensus 2 ~~~~~~~~~--~s~~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~ 79 (865)
T KOG1078|consen 2 SKKDEEDGG--KSNVFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVS 79 (865)
T ss_pred CccchhhcC--CCccccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHH
Confidence 466655442 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 002900 86 LRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSG 165 (869)
Q Consensus 86 lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal 165 (869)
+||++|+++++++..+++.++++|+++||++..++.+|+.|||+||.|.+..|+..+.+++++++.|++|.|+..|++..
T Consensus 80 LRr~vYl~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss 159 (865)
T KOG1078|consen 80 LRRMVYLAIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSS 159 (865)
T ss_pred HHHHHHHHHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhh
Q 002900 166 IHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA 245 (869)
Q Consensus 166 ~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~ 245 (869)
+||++.+++++++|.+++++..++.+.+|||||+++||.|+++|++++.|++..+..+...+|++.|.++|+....+..
T Consensus 160 ~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~- 238 (865)
T KOG1078|consen 160 YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKE- 238 (865)
T ss_pred hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhh-
Confidence 9999999999999999999999999999999999999999999999999999998877789999999999999987654
Q ss_pred cCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc--------
Q 002900 246 ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------- 317 (869)
Q Consensus 246 ~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-------- 317 (869)
++.....+++++..||+|+..||.|||+++++.+++.....+.+++..|+.|++++++.+||+|+|+|++
T Consensus 239 --~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 239 --NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred --cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 4555667899999999999999999999999999877778888999999999999999999999999998
Q ss_pred ---------ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 002900 318 ---------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388 (869)
Q Consensus 318 ---------~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~l 388 (869)
.+++|+|++|++.|+++|+++|+++|++++++++..|+++++++||+.++++|..||.+||.++..+++||
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhcc
Q 002900 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVH 468 (869)
Q Consensus 389 l~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~ 468 (869)
.++|+++|+|++|.+++++|+.+++.+|+.++.++.+||++|+||+++.+...+++++|+.|+...+|.+|+|++|||++
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI 476 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCCCCcchhhhhhhhcCCCCCChH
Q 002900 469 LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLA 548 (869)
Q Consensus 469 ~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~~~~~~~~~~~~~~l~~~~~~~~~ 548 (869)
+|+..||+++++|++||+..++.+++.|..++++|..|.|+||||||.+|++.+... +..+...+ +...++++
T Consensus 477 LEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~-----~~~l~~~~--~~l~~s~~ 549 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK-----DDVLNQNY--SGLFVSIP 549 (865)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh-----hhhhcccc--cccccccc
Confidence 999999999999999999888999999999999999999999999999999998743 23444444 66778899
Q ss_pred HHHHHHhhc--CCCCCCccccCCccccccchhhhhcCCCCCCCCCCCCCCCCCCchhHHHhhhcCCCccccCCCCCcCCC
Q 002900 549 NIETSLKNY--EPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSA 626 (869)
Q Consensus 549 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~~~~~s~ 626 (869)
.||+.|.+| ..+..+||+..+|...++..+......+. .+...+..+..+..+.|..++..+|+|..+|++++++.
T Consensus 550 ~le~~l~~y~~~~~~~~fd~~~v~~~s~~~~~~~~~~~k~--~~~~~~~~~~~~~~d~~~~~l~~i~~~~~lgpl~kSs~ 627 (865)
T KOG1078|consen 550 GLERSLVSYITGSFATPFDIKSVPVKSQAEEPAINLELKQ--TLVKAPEKEKIPKVDEYAAELASIPEFKALGPLFKSSR 627 (865)
T ss_pred hhHHHHHHHhhccccccchhhcchhhcccccccccccccc--cccCCCcccCCCccchhHHHHhccchhhhcCccccccC
Confidence 999999999 46789999999886543322111110000 00012222333445688999999999999999999999
Q ss_pred ceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCceEEEEEecC
Q 002900 627 PVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKP 706 (869)
Q Consensus 627 ~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~~~~v~~~~~ 706 (869)
++.|||+|+||+|+|+||+|..|+||||.++||++||.|+|+.+++.+.++ +.+...+|+++||+++++++|+.++.+
T Consensus 628 ~i~LTE~e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~--~evl~~i~~~slpy~qp~~~~tl~~~p 705 (865)
T KOG1078|consen 628 PIELTEPEAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGG--EEVLEKVPTMSLPYDQPGSAFTLVEFP 705 (865)
T ss_pred cceeccccceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCC--ceeeeeccccCCCCCCCcceEEEEEcC
Confidence 999999999999999999999999999999999999999999999987654 888888999999999999999988887
Q ss_pred CC--CCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCccccccccchHHHhhhcCCCceeEEEEeCCC
Q 002900 707 EG--VPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGP 784 (869)
Q Consensus 707 ~~--~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~W~~l~~~~e~~~~~~l~~ 784 (869)
.+ ..++++|+|+|+|++++|||+||+|+++||+|||.|||++++++|||+|+..++|...|++++ .|.+++|.++.
T Consensus 706 ~~~p~~v~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~aawde~~--~e~eetF~Ls~ 783 (865)
T KOG1078|consen 706 KDDPWAIAEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFPAAWDELG--FEAEETFNLST 783 (865)
T ss_pred CCCchhhhccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccchhhHHhcC--cchheeeeccc
Confidence 53 247889999999999999999999999999999999999999999999999999999999997 77889999998
Q ss_pred CCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEEeeccCCCeeEEEEEEecCCcchHHHHHH
Q 002900 785 RESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHE 864 (869)
Q Consensus 785 ~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~~~~~~~~~~~~~~~vRs~~~~v~~~l~~ 864 (869)
.+++++|+++|++.+||+||++++.+|++++.|+++++|+|+||++||++++++.+.+ |++++|+|||+++.+++.+.+
T Consensus 784 ~~tl~eAv~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~frgG~~vlvr~~ma~s~~-~vtm~Vtvrs~e~~~vd~Iva 862 (865)
T KOG1078|consen 784 VKSIQEAVKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFRGGYKVLVRAKMALSSG-GITMKVTVRSEDELVVDLIVA 862 (865)
T ss_pred cchHHHHHHHHHHHhCCccccccccCCCCCCceEEEEeeeeeCCceEEEeeeeeecCC-CcEEEEEEecCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998864 599999999999999999998
Q ss_pred HHh
Q 002900 865 IVA 867 (869)
Q Consensus 865 ~l~ 867 (869)
.+|
T Consensus 863 ~v~ 865 (865)
T KOG1078|consen 863 LVG 865 (865)
T ss_pred hcC
Confidence 875
No 2
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.9e-113 Score=917.10 Aligned_cols=832 Identities=36% Similarity=0.530 Sum_probs=741.2
Q ss_pred CCCccchhhhHHHHHh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHh
Q 002900 19 SPFLGIEKGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKEL 97 (869)
Q Consensus 19 ~~~~~~~k~~~~qe~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~ 97 (869)
.-|.+.++.+++||++ .|+++++++++|+.+|.+|.|++++|+.|++.+++.+||+++|+||++|..+|+-+|++++++
T Consensus 13 ~vf~~~~~~t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkel 92 (898)
T COG5240 13 KVFTTLTERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKEL 92 (898)
T ss_pred ccccChhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5789999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHhhhhHHHhhcCCCCH-HHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH
Q 002900 98 SPSADEVIIVTSSLMKDMTSKTD-MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV 176 (869)
Q Consensus 98 ~~~~d~~~Lvinsl~kDl~s~n~-~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v 176 (869)
+...|+++|.||+|+||++...| .+|.+|+|.|-.+.+.+++....+++.+++.++++.+|.+|+...+||++.+.+.+
T Consensus 93 S~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~ 172 (898)
T COG5240 93 SKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQT 172 (898)
T ss_pred hhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHH
Confidence 99999999999999999988877 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC----------------CChhHHHHHHHHHHHHhhcChhHHHHHHHhhc-cCCCCChhHHHHHHHHHH
Q 002900 177 KRWSNEVQEAVQS----------------RAALVQFHALALLHQIRQNDRLAVSKLVTSLT-RGTVRSPLAQCLLIRYTT 239 (869)
Q Consensus 177 ~~~~~~l~~~l~d----------------~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~-~~~~~~~~~~v~llr~l~ 239 (869)
++|.++.+++.-| .++..+|||+++|+.++++|.++..|++..+. ..+..++++-+.++|+..
T Consensus 173 ~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~ 252 (898)
T COG5240 173 KRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATV 252 (898)
T ss_pred HHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHH
Confidence 9999999998654 26799999999999999999999999998775 223678899999999998
Q ss_pred HhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc
Q 002900 240 QVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL--NGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK 317 (869)
Q Consensus 240 ~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l--~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~ 317 (869)
.++.. +|+....+.++|..+|+++..||.+|++|+++.+ .+..++...+++..|+.||++++...||+|+|++++
T Consensus 253 ~ll~~---n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~ 329 (898)
T COG5240 253 ELLKE---NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQ 329 (898)
T ss_pred HHHHh---ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 87766 6887888899999999999999999999999985 455678899999999999999999999999999988
Q ss_pred -----------------ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc
Q 002900 318 -----------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK 380 (869)
Q Consensus 318 -----------------~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~ 380 (869)
.+++|.|++|.+.|++.|+++|+++|++++++.+..|+++.+++||+.+|+++..||.+||.+
T Consensus 330 lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 330 LAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred HHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHH
Q 002900 381 YRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYI 460 (869)
Q Consensus 381 ~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l 460 (869)
+..+++||.+.|..+|+|++|..++++|.+++.+.|+.+|.++..||+|||||+|+++..+++.+||+.||..++|..|+
T Consensus 410 ~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 410 KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhcccc--CchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCCCCcchhhhhhh
Q 002900 461 RYIYNRVHLENATVRAAAVSTLAKFGAMVD--ALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDF 538 (869)
Q Consensus 461 ~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~--~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~~~~~~~~~~~~~~ 538 (869)
|+||||+++|+..||++++.|+.||+.... -....+..++++|++|.|+||||||.+.++.+... +....+
T Consensus 490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~-------da~~pl 562 (898)
T COG5240 490 RHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS-------DACEPL 562 (898)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh-------hhhhcc
Confidence 999999999999999999999999998653 57789999999999999999999999999988754 234445
Q ss_pred hcCCCCCChHHHHHHHhhc---CCCCCCccccCCccccccchhhhh--cCCCCC---CCCC---CCCCC-CCCCchhHHH
Q 002900 539 LFGSLDIPLANIETSLKNY---EPAEQPFDINSVPKEVKTQPLAEK--KAPGKM---PAGL---GAPPS-GPPSTVDAYE 606 (869)
Q Consensus 539 l~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~---~~~~~-~~~~~~~~~~ 606 (869)
+....-+++++||..|.-| ..+...||..++|+..+++..++. ..++.. ++.+ ..+.+ .+++..-.|+
T Consensus 563 ~~sd~~~dipsle~~l~~yIse~sf~t~fdvnqv~~~tedem~a~nlk~kks~t~ld~te~~p~edans~a~pni~tky~ 642 (898)
T COG5240 563 FSSDELGDIPSLELELIGYISEDSFATAFDVNQVRKFTEDEMKAINLKRKKSETTLDTTESVPKEDANSKADPNIKTKYA 642 (898)
T ss_pred ccccccCCcchhHHhhheeeccccccccccccccccccHhhhhhhhhhhccccceecccccCChhhhhcccCCccchhhh
Confidence 5566667799999999988 257899999999998877655432 111111 0101 11111 1233446899
Q ss_pred hhhcCCCccccCCCCCcCCCceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccceEEeec
Q 002900 607 KLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASK 686 (869)
Q Consensus 607 ~~l~~i~~~~~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i 686 (869)
++|..+.|+..||+++.||.++.|||.|+|++|+++||+|..|+||||.+.||+++..|+|+.|.+.|..++ ... ..+
T Consensus 643 d~l~sieq~k~fg~lvnSsr~i~LTEpeaefvVkvvKhvfkD~lVlqF~l~NtL~~i~l~n~~vv~tp~~~d-~~e-e~i 720 (898)
T COG5240 643 DELLSIEQIKPFGQLVNSSREIILTEPEAEFVVKVVKHVFKDRLVLQFLLENTLEGIQLSNGIVVLTPTGGD-KKE-ESI 720 (898)
T ss_pred hhhhhhhhhccccccccccCceeecCCcceeeehhhhhhhccceEEEEEeccchhheeeccceEEEcCCCcc-chh-hee
Confidence 999999999999999999999999999999999999999999999999999999999999999999876542 322 334
Q ss_pred cCCCCCCCCCceEEEEEecCCCCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCccccccccchHHH
Q 002900 687 PLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNA 766 (869)
Q Consensus 687 ~~~~L~~~~~~~~~v~~~~~~~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~ 766 (869)
...++..++...++|.|+.....+--|+|.++|.|+.+++++.||||+++||+|||.++++.++.+||++|+..++|...
T Consensus 721 ~~~qids~e~~~~~v~fk~~d~~~~eg~~~N~l~ftTkeI~~dt~epedegfqDey~id~~~i~agDfv~p~~~~nf~~~ 800 (898)
T COG5240 721 KVDQIDSSEGTLSIVRFKKLDWDIEEGYVVNGLFFTTKEIEGDTSEPEDEGFQDEYSIDPFQITAGDFVRPVRIKNFPAT 800 (898)
T ss_pred ehhhhccCCCceEEEEecccccccccceEeccceEEEEeecCCCCCccccccccceeccceeecccccccchhccCCccc
Confidence 44566778888899999887655667779999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCceeEEEEeCCCCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEEeeccCCCeeE
Q 002900 767 WESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVA 846 (869)
Q Consensus 767 W~~l~~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~~~~~~~~~~~ 846 (869)
+++++ .|...+|.+.-.-+.++.+++++...-|.|+++++ .|++.+.|++.+.|+.+.|.+|++++++..+...||+
T Consensus 801 fd~l~--~E~~~v~~~~~~~s~~~~~dki~ln~~~~p~e~Te-~p~ds~~hvmkL~Gk~~~G~kV~~~vkMv~S~~~g~t 877 (898)
T COG5240 801 FDRLK--REITFVLQGDIYASGKKILDKILLNSMKIPTEETE-TPNDSNTHVMKLNGKAYHGTKVSIRVKMVYSMACGCT 877 (898)
T ss_pred hhccc--hhhhheehhhHHHHHHHHHHHHHHhhccccccccC-CCCCCcceEEEEcceeccCceeeehhHHHHhhccCeE
Confidence 99875 55556666643334566778888788899999998 5888899999999998889999999999988778999
Q ss_pred EEEEEecCCcchHHHHHHH
Q 002900 847 MKLAVRSEDDNVSDMIHEI 865 (869)
Q Consensus 847 ~~~~vRs~~~~v~~~l~~~ 865 (869)
+++.+|.++.-+++.+...
T Consensus 878 vkV~~~gEs~~~~~lVvgl 896 (898)
T COG5240 878 VKVYCDGESLYVTQLVVGL 896 (898)
T ss_pred EEEEecCchHhHHHHHHhc
Confidence 9999999976676666543
No 3
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-96 Score=800.84 Aligned_cols=794 Identities=18% Similarity=0.246 Sum_probs=633.6
Q ss_pred HHHHHh-hhcCC-CCCHHHHHHHHHHHHHHHhcCC--CCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cch
Q 002900 29 VLQEAR-VFNDP-QLDPRRCSQVITKLLYLLNQGE--TFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADE 103 (869)
Q Consensus 29 ~~qe~r-~f~~~-~~~~~k~~~~l~kli~l~~~G~--~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~ 103 (869)
++.-+| +|... .+++++.|+|++|++|++++|+ +|||||+. +|++|+.+++|++||++++.+.+. +|+
T Consensus 36 ELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV-------~LLss~kysEKqIGYl~is~L~n~n~dl 108 (938)
T KOG1077|consen 36 ELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAV-------NLLSSNKYSEKQIGYLFISLLLNENSDL 108 (938)
T ss_pred HHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHH-------HHhhcCCccHHHHhHHHHHHHHhcchHH
Confidence 345578 88776 7899999999999999999997 69999976 557999999999999999877776 888
Q ss_pred hHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcC--CChHHHHHHHHHHhhhcccChHHHH--HH
Q 002900 104 VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVD--KNPVVASAALVSGIHLLQTTPEIVK--RW 179 (869)
Q Consensus 104 ~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d--~~p~VRk~A~lal~~L~~~~pe~v~--~~ 179 (869)
+-|++|+++|||.|+||...++||+++++|++++|++.+..+|.+.|.+ +.++||++||+|++|||++.||+++ .|
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W 188 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEW 188 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhH
Confidence 9999999999999999999999999999999999999999999999976 5699999999999999999999986 79
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHH--------HHH---HH-------hhc-cCCCCChhHHHHHHHHHHH
Q 002900 180 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV--------SKL---VT-------SLT-RGTVRSPLAQCLLIRYTTQ 240 (869)
Q Consensus 180 ~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~--------~~l---i~-------~l~-~~~~~~~~~~v~llr~l~~ 240 (869)
.+++..+|+|++-+|..+|..++..+.+.++.++ .+| +. +|. |+ +|+||.+++++|+++.
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~-vP~PWL~vKl~rlLq~ 267 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYF-VPAPWLQVKLLRLLQI 267 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeec-CCChHHHHHHHHHHHh
Confidence 9999999999999999999999998887765543 222 21 333 45 8999999999999997
Q ss_pred hhhhhcCCCCCchhhHHHHHHHHhc--------------CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCch
Q 002900 241 VIREAATTQTGDRPFYDFLESCLRH--------------KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPV 306 (869)
Q Consensus 241 ~~~~~~~dp~~~~~l~~~l~~~L~~--------------~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n 306 (869)
+. . +.||..+.++++++..+|.. +.+||+|||++++++++. +++++..|++.|+.||+++++|
T Consensus 268 ~p-~-~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~N 344 (938)
T KOG1077|consen 268 YP-T-PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETN 344 (938)
T ss_pred CC-C-CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhccccc
Confidence 62 2 45888888999999988864 347999999999999964 6788999999999999999999
Q ss_pred hHHHHHHHhcc-------------------ccCC-CCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHH
Q 002900 307 LRFAAVRTLNK-------------------SLIS-DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVV 366 (869)
Q Consensus 307 ~ry~aL~~l~~-------------------~~L~-d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~ 366 (869)
+||+||+.+.+ ..|+ +.|.|||++|+|+||.||+.+|++.|+.||+.|+..++..+|.++
T Consensus 345 iRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 345 IRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEI 424 (938)
T ss_pred chhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHH
Confidence 99999998866 4455 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHH-HHhh
Q 002900 367 VEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQ-ILHF 445 (869)
Q Consensus 367 v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~-~l~i 445 (869)
+.++++||+||+.++.||+|+.+++++.+|+| +.+++|.++++++.|+|++|.++.+++.+++....-++.++. ..|+
T Consensus 425 vlKvAILaEKyAtDy~WyVdviLqLiriagd~-vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyi 503 (938)
T KOG1077|consen 425 VLKVAILAEKYATDYSWYVDVILQLIRIAGDY-VSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYI 503 (938)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHhccc-ccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 99999999999999999999999999999998 789999999999999999999999999999987666665554 4899
Q ss_pred hcCCCCCCC-----ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002900 446 LGTEGPKTS-----DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLN 520 (869)
Q Consensus 446 lGE~~~~~~-----~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ 520 (869)
|||||+.+. .|...|..++.++.+.++.+|+.+|++++|++...||+++.|+.+|+...+..|.|+|+||++|++
T Consensus 504 LGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 504 LGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred hhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 999999874 388999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCcchhhhhhhhcCCCCCC--hHHHHHHHhhcCCCCCCccccCCcc-ccccchh-----h---hhcC-----C
Q 002900 521 TVGSDGEVIETDKDVKDFLFGSLDIP--LANIETSLKNYEPAEQPFDINSVPK-EVKTQPL-----A---EKKA-----P 584 (869)
Q Consensus 521 ll~~~~~~~~~~~~~~~~l~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-----~---~~~~-----~ 584 (869)
+.+.+. .+.+..++.+||+|+ .++|.++|....++...+.-+.-|. .+...+. . .... .
T Consensus 584 l~k~as-----~dvL~~vleeMPpF~er~ssll~kl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~tp~~v~~~s~st~~~ 658 (938)
T KOG1077|consen 584 LSKLAS-----TDVLQTVLEEMPPFPERESSLLKKLKKKKPSAISLRAGAGPKTLANPPPVASEPTPSKVSKRSNSTDPL 658 (938)
T ss_pred HHHhcc-----chHHHHHHhhCCCCccccchHHHHhhccCCchhccccccCCcccCCCCcccCCCCcccccCCCCCCCcc
Confidence 998763 367788899999998 6778888765432211111111010 0000000 0 0000 0
Q ss_pred CCCCCC-CC-CCCCC--CCCchhHHHh---hhc--CCCc--cccCCCCCcCCCceecCCCCCceEEEEEEEEeC---CcE
Q 002900 585 GKMPAG-LG-APPSG--PPSTVDAYEK---LLS--SIPE--FSDFGKLFKSSAPVELTEAETEYAVNVVKHIFD---RHV 650 (869)
Q Consensus 585 ~~~~~~-~~-~~~~~--~~~~~~~~~~---~l~--~i~~--~~~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~---~~i 650 (869)
+..+.+ ++ .+++. ..+..+.... ..+ ..|. +-+|..++....+|.++++ +.+.|+|..|. ||+
T Consensus 659 ~v~~~p~~n~t~~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed~---~iQIgvk~e~r~~~grl 735 (938)
T KOG1077|consen 659 SVPSPPPPNNTISSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFEDS---LIQIGVKSETRNNLGRL 735 (938)
T ss_pred cCCCCCCCCCCccCCCCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeecc---ceeEEEeeeccCcCCeE
Confidence 000000 00 00000 0000011100 011 1222 3445567777889999655 88899999997 699
Q ss_pred EEEEEeecCCCccccccEEEEEecCCcccceE--EeeccCCCCCCCCCceEE--EEEecCCCCCcccccceeEEEEEeec
Q 002900 651 VFQYNCTNTIPEQLLENVTVIVDASEAEEFAE--VASKPLRSLPYDSPGQIF--GAFEKPEGVPAVGKFSNMLRFIVKEV 726 (869)
Q Consensus 651 vl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~--~~~i~~~~L~~~~~~~~~--v~~~~~~~~~~~~~f~~~l~f~v~~~ 726 (869)
.|+|+++++- +|++++-.+-++++..+.. ......++++||.+.+.. +.+.+.....|...++ |..-
T Consensus 736 ~LfygNkts~---~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~pil~is----fk~g-- 806 (938)
T KOG1077|consen 736 YLFYGNKTSV---PLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPPILAIS----FKFG-- 806 (938)
T ss_pred EEEecccccc---cccccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCCeEEEE----EEeC--
Confidence 9999987654 6999998887765422322 223445699999985533 4444444445555544 5431
Q ss_pred CCCCCCCCCCCccceeeccceecccCCcccccccc--chHHHhhhcCCC-ceeEEEEeCCCCCCHHHHHHHHHHHhCCee
Q 002900 727 DPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVS--NFRNAWESIGPD-FERVDEYGLGPRESLAEAVSAVISLLGMQP 803 (869)
Q Consensus 727 ~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~--~F~~~W~~l~~~-~e~~~~~~l~~~~~~~~a~~~i~~~~~~~v 803 (869)
|... .-+-.+ -+|+.+++|++|..++ +|+++|++++++ .|.+++|... .+--...++..+..||+++
T Consensus 807 ----~ti~----~~ta~l-~lp~~iskf~~Pt~l~s~~Ff~rWk~ls~~~~~~q~~fk~~-rpld~~~l~~~l~gf~~~l 876 (938)
T KOG1077|consen 807 ----GTIN----LKTAIL-KLPVLISKFFQPTELTSEDFFSRWKQLSGPQQEAQEVFKAN-RPLDAPSLENKLLGFGQTL 876 (938)
T ss_pred ----Cchh----hhhhce-echhhHhhhcCcccccHHHHHHHHHhcccchhHHHHHHhcC-CccccHHHHHHHhhhhHHH
Confidence 2110 001013 5899999999998885 899999999854 4777788763 3322456889999999999
Q ss_pred cCCcccccCCCcceeEEEEEEEecC-cEEEEEEEeeccCCCeeEEEEEEecCCcchHHHHHHHHh
Q 002900 804 CEGTEVVANNSRSHTCLLSGVFIGN-VKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 867 (869)
Q Consensus 804 ~~~~~~~~~~~~~~~l~~~g~~~~~-~~vlv~~~~~~~~~~~~~~~~~vRs~~~~v~~~l~~~l~ 867 (869)
|++.||+|. +++.||+++++ ..|+|..|++.+.+ ..++|+|+||.++.+++.+..+++
T Consensus 877 ~~~VDpnp~-----nlv~agii~t~tq~vgCL~RiEpn~~-~~~~rltvrss~~tlak~l~e~l~ 935 (938)
T KOG1077|consen 877 LDNVDPNPS-----NLVGAGIIHTKSQNVGCLLRIEPNAQ-AQMYRLTVRTSKPTLAKELVELLK 935 (938)
T ss_pred hccCCCCcc-----ceEEEEEEeecceeeeeEEEeccCCc-ceEEEEEEecCCchHHHHHHHHHh
Confidence 999998866 89999999995 68999999999854 789999999999999999999886
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=2.6e-75 Score=686.73 Aligned_cols=501 Identities=18% Similarity=0.241 Sum_probs=432.5
Q ss_pred CCCccchhhhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhC
Q 002900 19 SPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELS 98 (869)
Q Consensus 19 ~~~~~~~k~~~~qe~r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~ 98 (869)
..||...|+++++|+|...+++ +.++++++|+|+|++|++|+ |++.+|++|+|+++|+|+++|||||+|+..|+
T Consensus 23 ~~~f~~~~kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~-----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya 96 (746)
T PTZ00429 23 SKYFAQTRRGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGR-----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTA 96 (746)
T ss_pred cccccccccchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCC-----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 5678778899999999433444 44555778999999999999 99999999999999999999999999999999
Q ss_pred CC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH
Q 002900 99 PS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (869)
Q Consensus 99 ~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~ 177 (869)
+. +|+++|+||+|+||++|+||.+||+|||+||+|+.+++++++.++|++++.|++|||||+|++|++|+|+.+|+.+.
T Consensus 97 ~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~ 176 (746)
T PTZ00429 97 RLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY 176 (746)
T ss_pred ccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc
Confidence 86 88899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh-------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCC
Q 002900 178 --RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATT 248 (869)
Q Consensus 178 --~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~-------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~d 248 (869)
+|++++.++++|+|++|++||+.+|++|+..++. .+.+++..+. ..++|.|+.+++.+..+-+. +
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~---e~~EW~Qi~IL~lL~~y~P~---~ 250 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLP---ECNEWGQLYILELLAAQRPS---D 250 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHhcCCC---C
Confidence 7999999999999999999999999999876543 2344555554 46799999999999864211 3
Q ss_pred CCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCC-ChHhHhhHHHHH---HHHHcCCCchhHHHHHHHhcc-------
Q 002900 249 QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGV-TNRELTPAITVL---QLFLSSSKPVLRFAAVRTLNK------- 317 (869)
Q Consensus 249 p~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~~~~~~a~~~L---~~~L~s~~~n~ry~aL~~l~~------- 317 (869)
......+++.+.+.|+|+|+||+|+|+++++++... +...+..+...+ ..+|.++++|+||++|+++..
T Consensus 251 ~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 251 KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHH
Confidence 333457888888999999999999999999998643 234444444322 235577899999999998755
Q ss_pred ---------ccC-CCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHH
Q 002900 318 ---------SLI-SDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNF 387 (869)
Q Consensus 318 ---------~~L-~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ 387 (869)
.+. +|++ +||++||++|++++|++|+..|++||.+|+.+.|.+|++++|++||.||.|||..++||+++
T Consensus 331 lf~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~ 409 (746)
T PTZ00429 331 LLRTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANL 409 (746)
T ss_pred HHHHHHHhhhcccCCcH-HHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 222 5655 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhh--hccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHh
Q 002900 388 LSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFI--EDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYN 465 (869)
Q Consensus 388 ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l--~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~ 465 (869)
|+++++..+.+ ..+++.++++|++++|+.. ++..|++.+ +++.+++++++++|++|||++.+.+..++++.+.+
T Consensus 410 Ll~ll~~~~~~--v~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~ 485 (746)
T PTZ00429 410 LLQIVDRRPEL--LPQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFID 485 (746)
T ss_pred HHHHhcCCchh--HHHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHh
Confidence 99999876554 3466789999999999864 788888866 77899999999999999999999899999988899
Q ss_pred hccCCCHHHHHHHHHHHHHHhcccc-CchHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhCCCCCCCcchhhhhhhhc
Q 002900 466 RVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRRCLY-DGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLF 540 (869)
Q Consensus 466 ~~~~e~~~vr~~~ltal~Kl~~~~~-~l~~~i~~ll~~~~~-d~d~evrdRA~~yl~ll~~~~~~~~~~~~~~~~l~ 540 (869)
+|..|++.||+++|++++|++.++| +.++.+..+|+.++. +.|+||||||++||+||+.++ ..+.+..++.
T Consensus 486 ~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~----~~~~a~~iv~ 558 (746)
T PTZ00429 486 TIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGI----TVAQMKKVVH 558 (746)
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC----cHHHHHHHHc
Confidence 9999999999999999999999998 688899999988865 677999999999999998764 1234555554
No 5
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-75 Score=643.48 Aligned_cols=758 Identities=16% Similarity=0.253 Sum_probs=566.5
Q ss_pred HHh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-------cch
Q 002900 32 EAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-------ADE 103 (869)
Q Consensus 32 e~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-------~d~ 103 (869)
|++ +|.+++ +..|. ++|||+|++|.+|++++++-|+.+.|.+ ++.|+++||+.|+|| |+.|. -++
T Consensus 24 ~ik~~Lek~~-~~~KI-eamK~ii~~mlnGe~~p~Llm~IiRfvl----ps~~~elKKLly~yw-E~vPKt~~dgkl~~E 96 (948)
T KOG1058|consen 24 EIKEKLEKGD-DEVKI-EAMKKIIALMLNGEDLPSLLMTIIRFVL----PSRNHELKKLLYYYW-ELVPKTDSDGKLLHE 96 (948)
T ss_pred HHHHHHhcCC-hHHHH-HHHHHHHHHHHcCCCchHHHHHHhheee----ccCchHHHHHHHHHH-HHccccCCCcccHHH
Confidence 444 444444 44444 4599999999999999999999888865 999999999999999 88874 268
Q ss_pred hHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhh-------hcccChHHH
Q 002900 104 VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIH-------LLQTTPEIV 176 (869)
Q Consensus 104 ~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~-------L~~~~pe~v 176 (869)
++|+||++||||+|||+++||..||+||+++.+|++++++|.|++||.|+|+||||.|++|++. |+++.||++
T Consensus 97 MILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi 176 (948)
T KOG1058|consen 97 MILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELI 176 (948)
T ss_pred HHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999984 455678888
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhc----cCCCCChhHHHHHHHHHHHhhhhhcCCCCCc
Q 002900 177 KRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLT----RGTVRSPLAQCLLIRYTTQVIREAATTQTGD 252 (869)
Q Consensus 177 ~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~----~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~ 252 (869)
..++...++..| -.+|+.+|+++.+. .|+.++...+. ++ ...++..+.+||..+. . +|..+
T Consensus 177 ~~fL~~e~DpsC------kRNAFi~L~~~D~E--rAl~Yl~~~idqi~~~~-~~LqlViVE~Irkv~~---~---~p~~~ 241 (948)
T KOG1058|consen 177 ESFLLTEQDPSC------KRNAFLMLFTTDPE--RALNYLLSNIDQIPSFN-DSLQLVIVELIRKVCL---A---NPAEK 241 (948)
T ss_pred HHHHHhccCchh------HHHHHHHHHhcCHH--HHHHHHHhhHhhccCcc-HHHHHHHHHHHHHHHh---c---CHHHh
Confidence 887765555444 44999999998887 78888877543 33 3445666677777763 2 68888
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK--------------- 317 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~--------------- 317 (869)
.++++++..+|++++++|.|||+-+++.+++.|..+..+|-+++..+...+|+|++...|.-|..
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mD 321 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMD 321 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999887777777788889999999999987655544332
Q ss_pred --ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHH-hhh------hccHHHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 002900 318 --SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITN-FMS------DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388 (869)
Q Consensus 318 --~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~-y~~------~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~l 388 (869)
+.|+.+|.++|+++|++.+.+.+..|++.|+.-|.+ ++. +.+..||..++++|+.+|.+||+.+..++..+
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~l 401 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLL 401 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 778999999999999999999999999999887765 322 33457999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhc-
Q 002900 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRV- 467 (869)
Q Consensus 389 l~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~- 467 (869)
+++|.+... .-..+++.+++..++++|++|..++.+|.+.+..+..+++..+++|++|||+....+....+..+-+.+
T Consensus 402 l~fisD~N~-~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slG 480 (948)
T KOG1058|consen 402 LDFISDSNE-AAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLG 480 (948)
T ss_pred HHHhccCCH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 999997543 345677889999999999999999999999999999999999999999999876654433333331110
Q ss_pred -----------------------------------------cC--------------CCHHHH-----------HHHHHH
Q 002900 468 -----------------------------------------HL--------------ENATVR-----------AAAVST 481 (869)
Q Consensus 468 -----------------------------------------~~--------------e~~~vr-----------~~~lta 481 (869)
.+ +-|..| +.+-++
T Consensus 481 Evp~~~sei~~~~~~~~~e~~~~~~s~~~~~~~~v~~dGTYAteSA~s~~~~~~~~~~rp~lrr~ll~GdfflgA~la~t 560 (948)
T KOG1058|consen 481 EVPIVCSEIERLHGEQTKEIELTSSSAPSSTKPKVLADGTYATESAFSSSSPTVKEADRPSLRRFLLTGDFFLGAVLAIT 560 (948)
T ss_pred ccceehHHHhhhhcccccccccccccccccCCCeeecCccchhhhhhcccccchhhccchHHHHHhhcchHHHHHHHHHH
Confidence 00 012222 222345
Q ss_pred HHHHhccccCc----------hHHHH----HHHHHhh-----cCCCHHHHHHHHHHHHHhCCCCCCCcchhhhhhhhcCC
Q 002900 482 LAKFGAMVDAL----------KPRVF----VLLRRCL-----YDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGS 542 (869)
Q Consensus 482 l~Kl~~~~~~l----------~~~i~----~ll~~~~-----~d~d~evrdRA~~yl~ll~~~~~~~~~~~~~~~~l~~~ 542 (869)
+.|++.++.++ ...+. .+++... +-.|.|=.+|-...++.|-... +.....++.+
T Consensus 561 LtKl~lr~~~l~~~k~~~N~~~aea~lIM~sii~lGkS~~~~~~Id~Ds~erI~~cIr~L~~~~-----p~~~~~f~~~- 634 (948)
T KOG1058|consen 561 LTKLVLRFEELEGPKTRQNALKAEALLIMVSIIHLGKSSFVSKTIDNDSLERIMLCIRILVSRN-----PEMNSQFLDD- 634 (948)
T ss_pred HHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHhccccCCCCCcCcchHHHHHHHHHHHHhhC-----hHHHHHHHHH-
Confidence 66776664211 11111 1111111 2235566677777777665532 2222222211
Q ss_pred CCCChHHHHHHHhh------------c----CCCCCCccccCCccccccchhh---h---hcCCCCCCCCCCCCCCCCCC
Q 002900 543 LDIPLANIETSLKN------------Y----EPAEQPFDINSVPKEVKTQPLA---E---KKAPGKMPAGLGAPPSGPPS 600 (869)
Q Consensus 543 ~~~~~~~l~~~l~~------------~----~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~ 600 (869)
.. .+|++.+.. . .+.++|+++.+.......+... + ..+.+. +....+
T Consensus 635 cr---~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ddpI~f~q~~~~~s~~~~en~fe~~L~~A~g~------~~~~~~-- 703 (948)
T KOG1058|consen 635 CR---QSFEKMIDAKKKRRKEELLKKSQKTTAQPDDPINFRQLRSGRSDERGENQFEEDLVQATGD------AQKAED-- 703 (948)
T ss_pred HH---HHHHHHhhHHHHHHHHHHHhhhccccCCCCCccchHhhcccchhhhhhhHHHHHHHHHhcc------cccccc--
Confidence 11 112221110 0 1357777766654311111000 0 001110 000000
Q ss_pred chhHHHhhhcCCCccccCCCCCcCCCceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccc
Q 002900 601 TVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEF 680 (869)
Q Consensus 601 ~~~~~~~~l~~i~~~~~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~ 680 (869)
.....+|.++.|++||+||.|... | +..++| .|||++.+.|++++ +|||+++++.+.++ +
T Consensus 704 --~s~~sKL~kV~QLtGfSDPVYaEA----------y---v~vnqy--DIVLDvL~VNqT~~-tLQNl~lelATlgd--L 763 (948)
T KOG1058|consen 704 --GSPASKLNKVTQLTGFSDPVYAEA----------Y---VTVNQY--DIVLDVLLVNQTKE-TLQNLSLELATLGD--L 763 (948)
T ss_pred --CCcHHHhhceeeccCCCCCeeeEE----------E---eeeeee--eEEEEEEEecCChH-HHhhheeeeeeccC--c
Confidence 111356889999999999987622 2 333444 89999999999965 89999999999876 9
Q ss_pred eEEeeccCCCCCCCCCceEEEEEecCC--CCCcccccceeEEEEEeecCCCCCCCCCCCcc-ceeeccceecccCCcccc
Q 002900 681 AEVASKPLRSLPYDSPGQIFGAFEKPE--GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVE-DEYQLEDLEVVAADYVMK 757 (869)
Q Consensus 681 ~~~~~i~~~~L~~~~~~~~~v~~~~~~--~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~-d~y~L~~l~i~~~dfi~p 757 (869)
+.....++-+|.|....++.+.++... +|++.|++. |.+. |. +.+ ..+.|++++++++|||+|
T Consensus 764 Klve~p~p~~Laph~f~~ikatvKVsStenGvIfGnIv----Y~~~------~~----a~~~~~VvLndIhidImDYI~P 829 (948)
T KOG1058|consen 764 KLVERPTPFSLAPHDFVNIKATVKVSSTENGVIFGNIV----YDTS------EA----ANDRNVVVLNDIHIDIMDYIKP 829 (948)
T ss_pred eeeecCCCcccCcccceeEEEEEEEeeccCcEEEEEEE----ecCc------cc----cccceEEEeccccccHHHhcCC
Confidence 999888888999999988887776654 677877643 4321 11 122 235699999999999999
Q ss_pred cccc--chHHHhhhcCCCceeEEEEeCC-CCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEE
Q 002900 758 VGVS--NFRNAWESIGPDFERVDEYGLG-PRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVR 834 (869)
Q Consensus 758 ~~~~--~F~~~W~~l~~~~e~~~~~~l~-~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~ 834 (869)
..++ +|+++|.+++ |++++++. +.+++.+++.++++.+||.++++.....-++++...+++++..+|+++|++
T Consensus 830 a~~~d~~FRtmW~efE----WENKvtv~t~~~~L~e~l~~i~kstNmkcLtpe~al~g~CgFlaaNlya~SifgedALaN 905 (948)
T KOG1058|consen 830 AKCDDDEFRTMWAEFE----WENKVTVNTTIKTLREFLGHISKSTNMKCLTPEAALDGDCGFLAANLYAKSIFGEDALAN 905 (948)
T ss_pred CcCChHHHHHHHHHhh----hcceeeeccccccHHHHHHHHHhhcCCcccCchhhccCccchhhhhHHHHhhccchhhee
Confidence 9996 6999999887 78888874 688999999999999999999986534444689999999999999999999
Q ss_pred EEeeccC-CCeeEEEEEEecCCcchHHHHHHHHh
Q 002900 835 LQFGIDG-PKEVAMKLAVRSEDDNVSDMIHEIVA 867 (869)
Q Consensus 835 ~~~~~~~-~~~~~~~~~vRs~~~~v~~~l~~~l~ 867 (869)
++++.+. ++.+.+.++|||..++++-.+-+-++
T Consensus 906 vsieK~~~~~~v~g~iRIRsK~QGialSLgdkv~ 939 (948)
T KOG1058|consen 906 VSIEKSSDGGPVSGHIRIRSKTQGIALSLGDKVG 939 (948)
T ss_pred eeeeccCCCCCceEEEEEEecccceeeeHHHHHH
Confidence 9999854 34799999999999999887766554
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-69 Score=605.55 Aligned_cols=485 Identities=20% Similarity=0.311 Sum_probs=433.0
Q ss_pred HHHH---Hh-hhcCCCCCHHHHHHHHHHHHHHHhcCC--CCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-c
Q 002900 29 VLQE---AR-VFNDPQLDPRRCSQVITKLLYLLNQGE--TFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-A 101 (869)
Q Consensus 29 ~~qe---~r-~f~~~~~~~~k~~~~l~kli~l~~~G~--~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~ 101 (869)
+.+| +| .|+++..+.++++..|.||+|++++|| .||++++ +|+++|.++..||+|||+++.+.++ +
T Consensus 30 I~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqiec-------lKLias~~f~dKRiGYLaamLlLdE~q 102 (866)
T KOG1062|consen 30 IQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIEC-------LKLIASDNFLDKRIGYLAAMLLLDERQ 102 (866)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHH-------HHHhcCCCchHHHHHHHHHHHHhccch
Confidence 3456 67 999999999999999999999999999 3776665 5889999999999999999888888 7
Q ss_pred chhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHH
Q 002900 102 DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN 181 (869)
Q Consensus 102 d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~ 181 (869)
|..+|+||+|+|||+|+|.+++|+||.+||+|..+||++.+.+.|.+.+.+++|||||||++|++|+.++.|++++.|++
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~ 182 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI 182 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhhcChhH---HHHH-------HHhh---------ccCCCCChhHHHHHHHHHHHhh
Q 002900 182 EVQEAVQSRAALVQFHALALLHQIRQNDRLA---VSKL-------VTSL---------TRGTVRSPLAQCLLIRYTTQVI 242 (869)
Q Consensus 182 ~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~---~~~l-------i~~l---------~~~~~~~~~~~v~llr~l~~~~ 242 (869)
.-.++|++++++|+..++.++.+++...+.+ ++++ +.++ ++++++.||.||+++|++..+.
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999875543 2333 3332 2445899999999999998664
Q ss_pred hhhcCCCCCchhhHHHHHHHHhc------CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhc
Q 002900 243 REAATTQTGDRPFYDFLESCLRH------KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (869)
Q Consensus 243 ~~~~~dp~~~~~l~~~l~~~L~~------~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~ 316 (869)
.. |++.++.|.++|.+..++ ..+||+|||+++|+.+.. .+.++..|+++|++||.++|.|+||+||..|.
T Consensus 263 q~---d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 263 QN---DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS-NSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred CC---CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC-CchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 43 888899999999998864 457999999999999965 46788999999999999999999999999887
Q ss_pred c-----------------ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc
Q 002900 317 K-----------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL 379 (869)
Q Consensus 317 ~-----------------~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~ 379 (869)
+ .||+|+|.+|||+||+++|+|.|++||..+++||..|+...+++||.+++.+|..+|+||++
T Consensus 339 r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 339 RVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred hhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 6 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhC-CchHHHHHHHHHHhhhc-----cCchhHHHHHHhhhcCCCCCC
Q 002900 380 KYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDI-PDAKENGLLHLCEFIED-----CEFTYLSTQILHFLGTEGPKT 453 (869)
Q Consensus 380 ~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~-p~~~~~~l~~L~~~l~~-----~~~~~~~~~~l~ilGE~~~~~ 453 (869)
+..|++|++++.+..+|+| +++++|+.+.++|.+- ++.++++..+|+..+.. +..+.+...++|+|||||+..
T Consensus 419 ~k~W~idtml~Vl~~aG~~-V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdll 497 (866)
T KOG1062|consen 419 DKRWHIDTMLKVLKTAGDF-VNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLL 497 (866)
T ss_pred cchhHHHHHHHHHHhcccc-cchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHh
Confidence 9999999999999999998 7899999999999987 89999999999987632 555667777899999999643
Q ss_pred C-----------ChHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002900 454 S-----------DPSKYIRYIYNRVH--LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLN 520 (869)
Q Consensus 454 ~-----------~~~~~l~~i~~~~~--~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ 520 (869)
- ++.+++..+++-+. ..+..+|+++++|++|+..+.+...+.|..++..+..+.|.|+||||.+|-.
T Consensus 498 l~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~~elQQRa~E~~~ 577 (866)
T KOG1062|consen 498 LDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSLDTELQQRAVEYNA 577 (866)
T ss_pred hcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 2 34666666655322 3358999999999999999998888999999999999999999999999999
Q ss_pred HhCCC
Q 002900 521 TVGSD 525 (869)
Q Consensus 521 ll~~~ 525 (869)
++...
T Consensus 578 l~~~~ 582 (866)
T KOG1062|consen 578 LFAKD 582 (866)
T ss_pred HHHHH
Confidence 99553
No 7
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-65 Score=565.43 Aligned_cols=482 Identities=17% Similarity=0.249 Sum_probs=428.0
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cchhHhhh
Q 002900 30 LQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVT 108 (869)
Q Consensus 30 ~qe~r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lvi 108 (869)
-++++.+.+++.+..||.+ |++||.+|++|. |++.+|++|+|++.|+|.++|||+|+|+.+|++. +|+++|.|
T Consensus 37 ~~dL~~lLdSnkd~~KleA-mKRIia~iA~G~-----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSI 110 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEA-MKRIIALIAKGK-----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSI 110 (968)
T ss_pred hHHHHHHHhccccHHHHHH-HHHHHHHHhcCC-----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeH
Confidence 3689999999999999888 999999999999 9999999999999999999999999999999997 99999999
Q ss_pred hHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhc
Q 002900 109 SSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQ 188 (869)
Q Consensus 109 nsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~ 188 (869)
|++||+|.|||+.+||.|||+|++|+.|.+++.+.-.|+++..|.+|||||.||+|+.|||...|+.-..+.+.+..+|.
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLa 190 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLA 190 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCChhHHHHHHHHHHHHhhcChh----HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCC--------------
Q 002900 189 SRAALVQFHALALLHQIRQNDRL----AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQT-------------- 250 (869)
Q Consensus 189 d~~~~v~~~al~ll~~i~~~d~~----~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~-------------- 250 (869)
|++|.|+++|+.++-++|++.-. .++|+..-+. ....|.|+.+|..+.+|.+..+.+|.
T Consensus 191 D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~---dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~ 267 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLP---DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCN 267 (968)
T ss_pred CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhcc---chhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccc
Confidence 99999999999999999986321 1333333222 24489999888888877665544552
Q ss_pred ----------------CchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHH
Q 002900 251 ----------------GDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRT 314 (869)
Q Consensus 251 ----------------~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~ 314 (869)
+.+.+++...++|++.|++|++.++++++++. |.......+..|.++|.++ +.+||..|+.
T Consensus 268 ~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA--P~~~~~~i~kaLvrLLrs~-~~vqyvvL~n 344 (968)
T KOG1060|consen 268 LKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA--PKNQVTKIAKALVRLLRSN-REVQYVVLQN 344 (968)
T ss_pred ccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC--CHHHHHHHHHHHHHHHhcC-CcchhhhHHH
Confidence 12467788889999999999999999999994 5556667778887777754 4789998888
Q ss_pred hcc---------------ccCCCCC-HHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCC
Q 002900 315 LNK---------------SLISDQN-RSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFP 378 (869)
Q Consensus 315 l~~---------------~~L~d~d-~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~ 378 (869)
+.. +++...| ..++.++|++|..++|++|+..|++|+..|+.+.|.+|....|++||+||.+.-
T Consensus 345 Ia~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~ 424 (968)
T KOG1060|consen 345 IATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG 424 (968)
T ss_pred HHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC
Confidence 765 3444444 458999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC-hH
Q 002900 379 LKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD-PS 457 (869)
Q Consensus 379 ~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~-~~ 457 (869)
...+.|++.|+.+++.....++ .+.|.+|+.+++++|-.+..++.+|.+.++.+..+.+++.++|++|||+..+.. .+
T Consensus 425 sv~~tCL~gLv~Llsshde~Vv-~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~P 503 (968)
T KOG1060|consen 425 SVTDTCLNGLVQLLSSHDELVV-AEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAP 503 (968)
T ss_pred chhhHHHHHHHHHHhcccchhH-HHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhch
Confidence 9999999999999998776655 555669999999999999999999999999999999999999999999988655 67
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc-CchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 002900 458 KYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGS 524 (869)
Q Consensus 458 ~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~-~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~ 524 (869)
+++|.+...|..|.++||.++|...+|++...+ +.+..+.++|+...+|.++|+||||+|+.+++..
T Consensus 504 DVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~ 571 (968)
T KOG1060|consen 504 DVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQLISP 571 (968)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHHHhcc
Confidence 999999999999999999999999999999875 5777889999999999999999999999888754
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=6.8e-67 Score=616.70 Aligned_cols=488 Identities=25% Similarity=0.377 Sum_probs=429.9
Q ss_pred hhhHHHHHh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cch
Q 002900 26 KGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADE 103 (869)
Q Consensus 26 k~~~~qe~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~ 103 (869)
++.+.+|++ .+++...+.++++++|+|++|++++|+ |++++|+.++++++|+|+++||+||+|+..+.+. +|.
T Consensus 2 ~~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~ 76 (526)
T PF01602_consen 2 RKRISQELAKILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL 76 (526)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH
Confidence 344556765 555555788888999999999999999 8999999999999999999999999999999987 677
Q ss_pred hHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHH-HHHH
Q 002900 104 VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR-WSNE 182 (869)
Q Consensus 104 ~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~-~~~~ 182 (869)
++|++|+++|||+|+||++||+|||+||+|+++++++.+.+.|.+++.|++|||||+|++|++++++.+|+.++. |++.
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhhcChh---HHHHHHHhhcc--CCCCChhHHHHHHHHHHHhhhhhcCCCCCc--hhh
Q 002900 183 VQEAVQSRAALVQFHALALLHQIRQNDRL---AVSKLVTSLTR--GTVRSPLAQCLLIRYTTQVIREAATTQTGD--RPF 255 (869)
Q Consensus 183 l~~~l~d~~~~v~~~al~ll~~i~~~d~~---~~~~li~~l~~--~~~~~~~~~v~llr~l~~~~~~~~~dp~~~--~~l 255 (869)
+..++.|+|++|+.+|+.++.+++.+++. .+.+++..+.. + .++||.++.++|.+..+.+. ++... ..+
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~q~~il~~l~~~~~~---~~~~~~~~~~ 232 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLS-DPDPWLQIKILRLLRRYAPM---EPEDADKNRI 232 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHT-CCSHHHHHHHHHHHTTSTSS---SHHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhccc-ccchHHHHHHHHHHHhcccC---ChhhhhHHHH
Confidence 99999999999999999999999222221 23344433321 2 68999999999999875432 34444 568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc----------------cc
Q 002900 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------SL 319 (869)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~----------------~~ 319 (869)
++.+..++++++++|+|||++++..+.. .......++..|..|++++++|+||.+|+.+.. .+
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~-~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~ 311 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSP-SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFF 311 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhc-chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhhe
Confidence 9999999999999999999999999965 344678899999999999999999999998876 33
Q ss_pred C-CCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCC
Q 002900 320 I-SDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDI-ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGG 397 (869)
Q Consensus 320 L-~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~-~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~ 397 (869)
+ .++|.+||++||++|+.++|++|+..|+++|.+|+.+. +.+++.+++.+|+.+|.+||+...|+++++++++...|+
T Consensus 312 l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~ 391 (526)
T PF01602_consen 312 LLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGD 391 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGG
T ss_pred ecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccc
Confidence 3 48899999999999999999999999999999999666 778999999999999999999999999999999998777
Q ss_pred cchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC---hHHHHHHHHhhccCCCHHH
Q 002900 398 FEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD---PSKYIRYIYNRVHLENATV 474 (869)
Q Consensus 398 ~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~---~~~~l~~i~~~~~~e~~~v 474 (869)
+ +..++|..+.+++.++|+.++.++..|++.++++..+++++.++|++||||+...+ +.++++.+.+++..+++.|
T Consensus 392 ~-~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~v 470 (526)
T PF01602_consen 392 Y-VSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEV 470 (526)
T ss_dssp G-CHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHH
T ss_pred c-ccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHH
Confidence 6 67899999999999999999999999999999999999999999999999999888 9999999999999999999
Q ss_pred HHHHHHHHHHHhcccc--CchHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhCC
Q 002900 475 RAAAVSTLAKFGAMVD--ALKPRVFVLLRRCLY--DGDDEVRDRATLYLNTVGS 524 (869)
Q Consensus 475 r~~~ltal~Kl~~~~~--~l~~~i~~ll~~~~~--d~d~evrdRA~~yl~ll~~ 524 (869)
|+.++++++|++.+.| +..+.+...+..+.. |.|+||||||++|+++|+.
T Consensus 471 k~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 471 KLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 9999999999999998 577788888888877 8899999999999999864
No 9
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-60 Score=534.39 Aligned_cols=501 Identities=18% Similarity=0.312 Sum_probs=441.2
Q ss_pred CCCccchhhhHHHHHh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHh
Q 002900 19 SPFLGIEKGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKEL 97 (869)
Q Consensus 19 ~~~~~~~k~~~~qe~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~ 97 (869)
.+|++.+|.+++-|+| .+++ ... .|.+.+++|+|..|+.|. |+|.+|++|+|++++.|.++|||+|||+..|
T Consensus 4 ~k~F~~~~k~ei~elks~l~s-~~~-~kr~~a~kkvIa~Mt~G~-----DvSslF~dvvk~~~T~dlelKKlvyLYl~nY 76 (734)
T KOG1061|consen 4 SKYFSTDKKGEIPELKSQLNS-QSK-EKRKDAVKKVIAYMTVGK-----DVSSLFPDVVKCMQTRDLELKKLVYLYLMNY 76 (734)
T ss_pred ccccCcchhhhchHHHHHhhh-hhh-hhHHHHHHHHHhcCccCc-----chHhhhHHHHhhcccCCchHHHHHHHHHHHh
Confidence 5788889999999999 6643 333 666888999999999999 9999999999999999999999999999999
Q ss_pred CCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH
Q 002900 98 SPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV 176 (869)
Q Consensus 98 ~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v 176 (869)
+.. ++++++++|++.||..|+||.+|++|+|++|.++.+.+.+++..++++++.|.+|||||+|++|..+++..+|+.+
T Consensus 77 a~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~ 156 (734)
T KOG1061|consen 77 AKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV 156 (734)
T ss_pred hccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc
Confidence 986 9999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred H--HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh---------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhh
Q 002900 177 K--RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL---------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA 245 (869)
Q Consensus 177 ~--~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~---------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~ 245 (869)
. .+++.+.+++.|.||+|+.+|+++|.+|...++. -+.+++..+. ....|+|+.++..+..+.+.
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~- 232 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPK- 232 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCC-
Confidence 7 6999999999999999999999999999866542 2355555555 56799999999999876543
Q ss_pred cCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChH----hHhhHHHHHHHHHcCCCchhHHHHHHHhcc----
Q 002900 246 ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR----ELTPAITVLQLFLSSSKPVLRFAAVRTLNK---- 317 (869)
Q Consensus 246 ~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~----~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---- 317 (869)
++...+.+.+.+.+.|+|++++|++.+++.++++...-.. ........|-.++++.. .+.|++|++++.
T Consensus 233 --d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 233 --DSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred --CchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 4456678899999999999999999999999977422122 22233334445555544 999999998765
Q ss_pred -----------ccCC-CCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHH
Q 002900 318 -----------SLIS-DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLM 385 (869)
Q Consensus 318 -----------~~L~-d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v 385 (869)
.+.+ +...+|+..+|+++..+++.+|+.+++.|+..|..+.|.+|.+++|++||.||.|+++. .-|+
T Consensus 310 ~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv 388 (734)
T KOG1061|consen 310 RPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCV 388 (734)
T ss_pred ChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhH
Confidence 2222 33478999999999999999999999999999999999999999999999999998888 8899
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHh
Q 002900 386 NFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYN 465 (869)
Q Consensus 386 ~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~ 465 (869)
+.++++++.+.+|.+++. +-+|+++++.+|...+.++..++..++....|+++.+++||+|||+..+++..++++.+.+
T Consensus 389 ~~lLell~~~~~yvvqE~-~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~e 467 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEA-IVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLE 467 (734)
T ss_pred HHHHHHHhhcccceeeeh-hHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHh
Confidence 999999999999977555 5599999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhcccc-CchHHHHHHHHHhhcCCC-HHHHHHHHHHHHHhCCCCCCCcchhhhhhhhcC
Q 002900 466 RVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRRCLYDGD-DEVRDRATLYLNTVGSDGEVIETDKDVKDFLFG 541 (869)
Q Consensus 466 ~~~~e~~~vr~~~ltal~Kl~~~~~-~l~~~i~~ll~~~~~d~d-~evrdRA~~yl~ll~~~~~~~~~~~~~~~~l~~ 541 (869)
++..|...||..+++|..|+|.+.| +.+..+..+|..|..|.+ +|+|||+.+||++|+.+ +..++.++..
T Consensus 468 n~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~------~~~a~~v~~~ 539 (734)
T KOG1061|consen 468 NFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSED------PLIAKDVVLA 539 (734)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcC------HHHHHHHHhc
Confidence 9999999999999999999999988 788899999999999887 79999999999999865 4556665543
No 10
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-54 Score=473.40 Aligned_cols=484 Identities=15% Similarity=0.238 Sum_probs=423.2
Q ss_pred hHHHHHh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cchhH
Q 002900 28 AVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVI 105 (869)
Q Consensus 28 ~~~qe~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~ 105 (869)
..+.|+| ..++..++.+ ..++.|+.|+.+.|. |++|.-|.++..|+|..+..||+||++...-+.. +|.++
T Consensus 36 ~~l~e~r~E~k~~d~~~k--~~a~~kl~yl~mlg~-----d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlm 108 (877)
T KOG1059|consen 36 QCLEEIRQELKSDDLNVK--SNAVLKLTYLEMLGV-----DMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLM 108 (877)
T ss_pred HHHHHHHHHhhchhhhhh--HHHHHHHHHHHHHcc-----hHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHH
Confidence 5677888 7777777777 777999999999999 9999999999999999999999999999776655 89999
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
|.+|+++||++|+|.+-.|+||..|++|.+|++++.+.++|..+|+++.|||||+|++.++|+|.+|||.++..++++.+
T Consensus 109 L~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E 188 (877)
T KOG1059|consen 109 LTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE 188 (877)
T ss_pred HHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhc---cCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHH
Q 002900 186 AVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLT---RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESC 262 (869)
Q Consensus 186 ~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~---~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~ 262 (869)
-|.|+||+|+.+|+++++|+.+.+|..+-.|.+.+. -. ..+.|..+++|+++..+. +++|+...++++.|.++
T Consensus 189 kLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffklltt-SsNNWmLIKiiKLF~aLt---plEPRLgKKLieplt~l 264 (877)
T KOG1059|consen 189 KLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVT-SSNNWVLIKLLKLFAALT---PLEPRLGKKLIEPITEL 264 (877)
T ss_pred hccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhc-cCCCeehHHHHHHHhhcc---ccCchhhhhhhhHHHHH
Confidence 999999999999999999999988887655555331 12 467899999999998753 46899999999999999
Q ss_pred HhcCCh-HHHHHHHHHHHhcc-----CCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-----------------cc
Q 002900 263 LRHKAE-MVIFEAARAITELN-----GVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-----------------SL 319 (869)
Q Consensus 263 L~~~~~-aV~~ea~~~i~~l~-----~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-----------------~~ 319 (869)
++++.. +++|||+++++..+ +...+....|+..|+.|+.++|+|+||+||-++.+ +|
T Consensus 265 i~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrc 344 (877)
T KOG1059|consen 265 MESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRC 344 (877)
T ss_pred HHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHH
Confidence 998776 59999999998652 12345667899999999999999999999988876 89
Q ss_pred CCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccH-HHHHHHHHHHHHHHhhC----CccHHHHHHHHHHHHhh
Q 002900 320 ISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIAD-EFKIVVVEAIRSLCLKF----PLKYRSLMNFLSNILRE 394 (869)
Q Consensus 320 L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~-~~r~~~v~aI~~la~k~----~~~~~~~v~~ll~ll~~ 394 (869)
|.|.|.|||.+||++|+.|++++|+..|++.|..++-..+. .||.+++..|..+|.+. =.+.+||+.++.++.+.
T Consensus 345 L~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l 424 (877)
T KOG1059|consen 345 LDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARL 424 (877)
T ss_pred hccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998876666 89999999999999853 25789999999999888
Q ss_pred cCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhcc------C----chhHHHHHHhhhcCCCCCCCChHHHHHHHH
Q 002900 395 EGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC------E----FTYLSTQILHFLGTEGPKTSDPSKYIRYIY 464 (869)
Q Consensus 395 ~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~------~----~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~ 464 (869)
.|. ..+..|-+.++++.-+.|..|...+......+++. . -++++.+++|++|||+....+|.+.+..+.
T Consensus 425 ~~~-~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leaml 503 (877)
T KOG1059|consen 425 EGT-RHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAML 503 (877)
T ss_pred ccc-chhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 773 47788899999999999999999999999988853 1 356888999999999999999999998877
Q ss_pred h-hccCCCHHHHHHHHHHHHHHhccc-----c--------CchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 002900 465 N-RVHLENATVRAAAVSTLAKFGAMV-----D--------ALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVG 523 (869)
Q Consensus 465 ~-~~~~e~~~vr~~~ltal~Kl~~~~-----~--------~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~ 523 (869)
. +...-+..+++.++.++.|+|... | .+-..+...|.....+.|.|||+||...+.++.
T Consensus 504 rpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 504 RPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred cCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHH
Confidence 5 666779999999999999998852 1 123456666777788999999999776555543
No 11
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.4e-50 Score=461.54 Aligned_cols=670 Identities=17% Similarity=0.208 Sum_probs=485.0
Q ss_pred hhHHHHHhhh-cCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cchh
Q 002900 27 GAVLQEARVF-NDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEV 104 (869)
Q Consensus 27 ~~~~qe~r~f-~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~ 104 (869)
..++++.+.- .+++ +.++...+|+|+|..|+.|+ ||+.+|++|+|.+.+.|.++|||+|+||..|+.. ++++
T Consensus 17 ~~~~~~~~sg~l~s~-n~~~kidAmK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~ 90 (757)
T COG5096 17 ADSVAALSSGRLESS-NDYKKIDAMKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA 90 (757)
T ss_pred chHHhhhcccccccc-ChHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH
Confidence 3455555522 3333 34445667999999999999 8999999999999999999999999999999886 8999
Q ss_pred HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHH--HHHH
Q 002900 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR--WSNE 182 (869)
Q Consensus 105 ~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~--~~~~ 182 (869)
+|++|+++||+.||||++||+|||+||.++.+++++++++.|++++.|++|||||+|++|+.++|+.+++.+.. ....
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998874 5677
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhhcChhH----HHHHHHhhc--cCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhH
Q 002900 183 VQEAVQSRAALVQFHALALLHQIRQNDRLA----VSKLVTSLT--RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFY 256 (869)
Q Consensus 183 l~~~l~d~~~~v~~~al~ll~~i~~~d~~~----~~~li~~l~--~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~ 256 (869)
+..++.|.||.|..+|+..|.+|.+.+... +...++++. ......+|.....+..+.... +.+|.....+.
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~---~~~~~s~~~~~ 247 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERV---PTTPDSAEDFE 247 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccC---CCCCCcHHHHH
Confidence 778888999999999999999998763222 233444443 110123666655555554332 23566667788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCC--ChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------c-
Q 002900 257 DFLESCLRHKAEMVIFEAARAITELNGV--TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------S- 318 (869)
Q Consensus 257 ~~l~~~L~~~~~aV~~ea~~~i~~l~~~--~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------~- 318 (869)
+.+...+++.++.|+.-|++.++.+... ...........+..++..+..-+.|...+.... .
T Consensus 248 ~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~ 327 (757)
T COG5096 248 ERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFL 327 (757)
T ss_pred HhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhh
Confidence 8888999999999999999999877421 111222334456666655534444544433221 2
Q ss_pred cCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHh---
Q 002900 319 LISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSD--IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR--- 393 (869)
Q Consensus 319 ~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~--~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~--- 393 (869)
+-.+.|.+++..+++.+..+.+.+|..+++.|+..|+.+ .+.++..+++++|+.++.+.+.....+++.++.+++
T Consensus 328 ~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~ 407 (757)
T COG5096 328 IEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVW 407 (757)
T ss_pred hhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchh
Confidence 225667899999999999999999999999999999998 999999999999999999998888899999999998
Q ss_pred hcCCcchHHH----HHHHHH---HHHHhC----CchHHHHHHHHHHhhhcc-CchhHHHHH-----HhhhcCCCCCCCCh
Q 002900 394 EEGGFEYKKA----IVDSIV---ILIRDI----PDAKENGLLHLCEFIEDC-EFTYLSTQI-----LHFLGTEGPKTSDP 456 (869)
Q Consensus 394 ~~g~~~~~~~----iv~~i~---~ii~~~----p~~~~~~l~~L~~~l~~~-~~~~~~~~~-----l~ilGE~~~~~~~~ 456 (869)
..|.|.+.+. .|..++ .+++.. |+.....+-.+.+.++-- ..|.++... +|++|||+..+.+-
T Consensus 408 ~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~ 487 (757)
T COG5096 408 IRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRL 487 (757)
T ss_pred hccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhh
Confidence 7788866544 244443 344444 444555555555555511 157766666 99999999876554
Q ss_pred H-HHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc-Cch----HHHHHHHHHhhcCC-CHHHHHHHHHHHHHhCCCCCCC
Q 002900 457 S-KYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD-ALK----PRVFVLLRRCLYDG-DDEVRDRATLYLNTVGSDGEVI 529 (869)
Q Consensus 457 ~-~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~-~l~----~~i~~ll~~~~~d~-d~evrdRA~~yl~ll~~~~~~~ 529 (869)
. +.++.....+..|+..||.+++.+.+|+...++ ... +....+++.|.... ++|+||||.+|++++..+.
T Consensus 488 ~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra~my~~~lst~~--- 564 (757)
T COG5096 488 EPELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLVPDLRDRARMYSRLLSTPL--- 564 (757)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCChhHHHHHHHHHHHhcCCC---
Confidence 3 677777777788999999999999999999875 222 34558888887544 5999999999999986432
Q ss_pred cchhhhhhhhcCCCCCChHHHHHHHhhcCCCCCCccccCCccccccchhhhhcCCCCCCCCCCCCCCCCCCchhHHHhhh
Q 002900 530 ETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLL 609 (869)
Q Consensus 530 ~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 609 (869)
.+... ++- .+..
T Consensus 565 --~~~s~--------------------------~i~----------------------------------------~e~~ 576 (757)
T COG5096 565 --PEFSD--------------------------PIL----------------------------------------CEAK 576 (757)
T ss_pred --ccccc--------------------------hhh----------------------------------------hccc
Confidence 00000 000 0000
Q ss_pred cCCCccccCCCCCcCCCceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCC
Q 002900 610 SSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLR 689 (869)
Q Consensus 610 ~~i~~~~~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~ 689 (869)
...+ +..+++....+|+++ +.++|+.+.+ +.+. +......|+.
T Consensus 577 ~s~~---------------------------------~~~~i~~~~~~~~t~-~~l~nl~~~~-t~~~--l~~~~~~~~~ 619 (757)
T COG5096 577 KSNS---------------------------------QFEIILSALLTNQTP-ELLENLRLDF-TLGT--LSTIPLKPIF 619 (757)
T ss_pred cccc---------------------------------chhhhhhhhccccCH-HHHHhhhccc-cccc--eeccCCCCcc
Confidence 0000 113445555678874 6899988888 5443 6555566788
Q ss_pred CCCCCCCceEEEEEecCC--CCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCcccccccc--chHH
Q 002900 690 SLPYDSPGQIFGAFEKPE--GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVS--NFRN 765 (869)
Q Consensus 690 ~L~~~~~~~~~v~~~~~~--~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~--~F~~ 765 (869)
++++|+....+++++.+. .+.+.|... + . |+..++ .....+++.++...+|+.|.++. .|+.
T Consensus 620 ~l~~~~~~~~~~~v~~~~~~~~~i~gn~~----~-------~-~a~~~~--~~~~~~~d~~~s~~~~~~~~t~~e~~~~~ 685 (757)
T COG5096 620 NLRKGAVVLQQVTVKKPNAELGFITGNIN----P-------S-GAANED--LRDINLNDSINSISGFVNPRTVDEDYFRE 685 (757)
T ss_pred cCCCCceeeeeeeeeccchhhhhhccCcc----C-------C-cccccc--ccccccCCCccchhccccceecccccccc
Confidence 999999887888887765 223344321 1 1 221111 12245667789999999999984 5999
Q ss_pred HhhhcCCCceeEEEEeCC--CCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEEeec
Q 002900 766 AWESIGPDFERVDEYGLG--PRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI 839 (869)
Q Consensus 766 ~W~~l~~~~e~~~~~~l~--~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~~~~ 839 (869)
+|+..+ |+++...+ ..+.+.+....+...+||...++++..+ +.+|......++|....++.
T Consensus 686 ~~~~~e----~e~~~~~~~n~~~~l~~~~~e~~~~~nm~~~~~~~~~~--------~~~~~l~s~~~~l~~~~l~~ 749 (757)
T COG5096 686 LWKMDE----FENKIDESSNNPKKLDDYSEEKSREDNMEILTPSDDLE--------FSSSSLGSKSDALMSLCLEK 749 (757)
T ss_pred cccccc----cccccCcccCCcHhHHHHHHHhhhcccCCCCCcccccc--------ccccccccchhhhhhhhhcC
Confidence 998755 55655553 3566788899999999999988766222 23333333455666666654
No 12
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=100.00 E-value=1.4e-37 Score=293.86 Aligned_cols=149 Identities=56% Similarity=0.941 Sum_probs=113.2
Q ss_pred hhHHHhhhcCCCccccCCCCCcCCCceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccce
Q 002900 602 VDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFA 681 (869)
Q Consensus 602 ~~~~~~~l~~i~~~~~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~ 681 (869)
++.|+++|+.||+|++||++++||.++.|||+|+||+|+|+||+|.+||||||.|+||++||.|+||+|++++.+.+ |+
T Consensus 2 ~~~y~~~l~~ipe~~~lG~l~kSs~~v~LTE~EtEY~V~~vKHiF~~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~-~~ 80 (151)
T PF08752_consen 2 QEEYAEQLSKIPEFANLGPLFKSSKPVELTESETEYVVSCVKHIFAEHIVLQFNVTNTLNDQVLENVSVVLEPSEEE-FE 80 (151)
T ss_dssp HHHHHHHHHTSGGGTTS-S--EE-S-EE-S-TTSSEEEEEEEEE-SSEEEEEEEEEE--TTEEEEEEEEEEEESSS---E
T ss_pred hHHHHHHHHcChhHhhcCcccccCCCEeccCcccEEEEEEEEEEecccEEEEEEEeeccCceeeeeEEEEEecCCce-EE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999987653 99
Q ss_pred EEeeccCCCCCCCCCceEEEEEecCC-CCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceeccc
Q 002900 682 EVASKPLRSLPYDSPGQIFGAFEKPE-GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVA 751 (869)
Q Consensus 682 ~~~~i~~~~L~~~~~~~~~v~~~~~~-~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~ 751 (869)
+...+|+++|+||+++++||.+++++ ...+.++|+|+|+|+++|+||+||+++++||+|||+|||+++++
T Consensus 81 ~~~~ipi~~L~~~~~~~~yV~l~~~~~~~~~~~~f~~~LkF~vke~Dp~tge~~~~GyeDEY~lEdlel~v 151 (151)
T PF08752_consen 81 EVFIIPIPSLPYNEPGSCYVVLKRPPPGSIPSGTFSNTLKFTVKEVDPSTGEPEDEGYEDEYQLEDLELTV 151 (151)
T ss_dssp EEEEE-EEEE-CT--EEEEEEEE-SSSTT---EEEEEEEEEEEEEB-TTT--B-S--EEEEEE---EEE-G
T ss_pred EEEEEEhhhCCCCCCeeEEEEEEeCCCCCceeeeEEeEEEEEEEeecCCCCCcCCCCccceEEeccEEEeC
Confidence 99999999999999999999999954 66799999999999999999999999999999999999999874
No 13
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=99.70 E-value=1.5e-16 Score=145.86 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=104.9
Q ss_pred eeeccceecccCCcccccccc--chHHHhhhcCCCceeEEEEeCC-CCCCHHHHHHHHHHHhCCeecCCcccccCCCcce
Q 002900 741 EYQLEDLEVVAADYVMKVGVS--NFRNAWESIGPDFERVDEYGLG-PRESLAEAVSAVISLLGMQPCEGTEVVANNSRSH 817 (869)
Q Consensus 741 ~y~L~~l~i~~~dfi~p~~~~--~F~~~W~~l~~~~e~~~~~~l~-~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~ 817 (869)
.+.|++++|++.|||+|..++ +|+++|.+++ |++++++. ...++.+.++++++.+||.++++......+.++.
T Consensus 4 ~viLNdIhIdImDyI~Pa~~~~~~FR~mW~eFE----WENKi~V~t~~~dl~~yl~~i~k~tnM~~Ltp~~~l~~~~~fl 79 (129)
T PF14806_consen 4 CVILNDIHIDIMDYIKPATCSDEEFRSMWAEFE----WENKISVNTNITDLREYLDHIMKSTNMKCLTPESALSGDCGFL 79 (129)
T ss_pred EEEcccceEcHHHhcCcccCCHHHHHHHHHhhe----eeeeEEEecCCCCHHHHHHHHHHhcCcceeccccccCCCCCEE
Confidence 457999999999999999996 6999998876 89999885 5778999999999999999999754344457899
Q ss_pred eEEEEEEEecCcEEEEEEEeeccCCCeeEEEEEEecCCcchHHHH
Q 002900 818 TCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 862 (869)
Q Consensus 818 ~l~~~g~~~~~~~vlv~~~~~~~~~~~~~~~~~vRs~~~~v~~~l 862 (869)
.+++++++++|+++|+++.++..+++.+.+.+++||..++++..+
T Consensus 80 ~~Nlya~S~fgedaL~Nlsiek~~~~~i~G~vRIRSk~qgia~sl 124 (129)
T PF14806_consen 80 SANLYARSIFGEDALANLSIEKQADGKISGHVRIRSKTQGIALSL 124 (129)
T ss_pred EEEEEEEeccCCeeEEEEEEEecCCCeEEEEEEEeeCCcChhhhh
Confidence 999999999999999999999966778999999999999998765
No 14
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=99.60 E-value=6e-15 Score=134.75 Aligned_cols=106 Identities=22% Similarity=0.362 Sum_probs=83.5
Q ss_pred cccccccc--chHHHhhhcC-CCceeEEEEeCC--CCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecC
Q 002900 754 YVMKVGVS--NFRNAWESIG-PDFERVDEYGLG--PRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGN 828 (869)
Q Consensus 754 fi~p~~~~--~F~~~W~~l~-~~~e~~~~~~l~--~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~ 828 (869)
|++|..++ +|+++|++++ ++.|.+.+|.+. ......+.+.+++..|||.+++|.||+|+ +++.||+++++
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~Q~vf~~~~~~~~~~~~~~~~~l~g~~~~vl~~vDpnp~-----n~v~Agi~~t~ 75 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEAQEVFKLKDAKRPMDLESIRRKLEGFGFAVLDGVDPNPN-----NIVGAGIFHTK 75 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEEEEEEE----SS---HHHHHHHHHHHTSEEETSSSSSTT-----SEEEEEEEE-S
T ss_pred CCCCccCCHHHHHHHHHhccCCccccEEEEcccccCCcccHHHHHHHHhcCCeEecCCCCCCcc-----cEEEEEEEEec
Confidence 78999985 8999999997 567999999963 23334577999999999999999998866 89999999995
Q ss_pred --cEEEEEEEeeccCCCeeEEEEEEecCCcchHHHHHHH
Q 002900 829 --VKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEI 865 (869)
Q Consensus 829 --~~vlv~~~~~~~~~~~~~~~~~vRs~~~~v~~~l~~~ 865 (869)
.+++|.+|++.+.+ +.++|+||||+++.++..|+++
T Consensus 76 ~~g~~gcLlRlE~n~~-~~~~RlTvRst~~~vs~~l~~l 113 (113)
T PF02296_consen 76 SSGNVGCLLRLEPNQD-AKMFRLTVRSTDPSVSKALCKL 113 (113)
T ss_dssp -S-EEEEEEEEEEETT-TTEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEEEEeECCc-CCeEEEEEEECChhHHHHHhcC
Confidence 79999999999855 5699999999999999998863
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.37 E-value=8.7e-10 Score=130.51 Aligned_cols=414 Identities=17% Similarity=0.224 Sum_probs=286.5
Q ss_pred cchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC--CChhhHHHHHHHHHHHhcCCChHHHHHHH
Q 002900 85 GLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQIERYLKQAIVDKNPVVASAAL 162 (869)
Q Consensus 85 ~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I--~~~~~~~~l~~~i~~~l~d~~p~VRk~A~ 162 (869)
.++|+.|+++.-+ ..+ -....+.+-+.++|...|-++--+++.+ .+++.+--+...+++-+.|++|++|-.|+
T Consensus 26 ~l~kli~~~~~G~--~~~---~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL 100 (526)
T PF01602_consen 26 ALKKLIYLMMLGY--DIS---FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLAL 100 (526)
T ss_dssp HHHHHHHHHHTT-----G---STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCc---hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 5677888776221 211 2333445556788988888777777654 35566677888999999999999999999
Q ss_pred HHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH-HHH---hhccCCCCChhHHHHHHHHH
Q 002900 163 VSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK-LVT---SLTRGTVRSPLAQCLLIRYT 238 (869)
Q Consensus 163 lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~-li~---~l~~~~~~~~~~~v~llr~l 238 (869)
-++.++. .|++++.+.+.+..++.|++|-|.-.|+..+..+.+.+|..+.. +++ ++.. ..+|-.....+..+
T Consensus 101 ~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~--d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 101 RTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS--DKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT--HSSHHHHHHHHHHH
T ss_pred hhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc--CCcchhHHHHHHHH
Confidence 9999987 99999999999999999999999999998888887666554333 233 2222 24454444455555
Q ss_pred HHhhhhhcCCC----CCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhH--hhHHHHHHHHHcCCCchhHHHHH
Q 002900 239 TQVIREAATTQ----TGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL--TPAITVLQLFLSSSKPVLRFAAV 312 (869)
Q Consensus 239 ~~~~~~~~~dp----~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~--~~a~~~L~~~L~s~~~n~ry~aL 312 (869)
..+ .. +| .....+++.+..++...++-+...+++++..+........ ...+..+..++.+..+.+.|.++
T Consensus 177 ~~i-~~---~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~ 252 (526)
T PF01602_consen 177 SEI-KC---NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAI 252 (526)
T ss_dssp HHH-HC---THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cc---CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHH
Confidence 433 11 12 2234455666666678899999999999988754444444 45777788888888888999988
Q ss_pred HHhcc----------------ccCCCCCHHHHHHHHHHhhccCChh-hHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 002900 313 RTLNK----------------SLISDQNRSIATLAITTLLKTGNES-SVDRLMKQITNFMS-DIADEFKIVVVEAIRSLC 374 (869)
Q Consensus 313 ~~l~~----------------~~L~d~d~sI~~~aL~lL~~l~~e~-nv~~Il~eL~~y~~-~~~~~~r~~~v~aI~~la 374 (869)
+.+.. .++.++|..+|..+|+.|..++... ..-.-..-...++. +.|...|...+.-+..++
T Consensus 253 ~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 253 RLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 87755 6678999999999999999998776 11111112223444 677889999999999999
Q ss_pred hhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhcc---CchhHHHHHHhhhcCCCC
Q 002900 375 LKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC---EFTYLSTQILHFLGTEGP 451 (869)
Q Consensus 375 ~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~---~~~~~~~~~l~ilGE~~~ 451 (869)
. +.....+++.|.+.++...+.+++..++..+..+...+|...+..+..+.+.+..- -..++...+.-++..+..
T Consensus 333 ~--~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 333 N--ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT
T ss_pred c--ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh
Confidence 7 47778899999999965556668999999999999999999999999999988742 223444455566655433
Q ss_pred CCCChHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHhccccC--chHHHHHHHHHhhcCCCHHHHHHHH
Q 002900 452 KTSDPSKYIRYIYNRVH-LENATVRAAAVSTLAKFGAMVDA--LKPRVFVLLRRCLYDGDDEVRDRAT 516 (869)
Q Consensus 452 ~~~~~~~~l~~i~~~~~-~e~~~vr~~~ltal~Kl~~~~~~--l~~~i~~ll~~~~~d~d~evrdRA~ 516 (869)
. -...+..+.+.+. ...+.++..++-.++.++...++ ..+.+...+.....+.+.++|-.+.
T Consensus 411 ~---~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~il 475 (526)
T PF01602_consen 411 L---REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQIL 475 (526)
T ss_dssp T---HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred h---hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHH
Confidence 2 2334444544332 45777888888888988887776 3333344444444555677776544
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=99.16 E-value=6.9e-08 Score=115.80 Aligned_cols=370 Identities=13% Similarity=0.147 Sum_probs=188.3
Q ss_pred HHhhcCCCCHHHHhHHHHH-hccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcC
Q 002900 111 LMKDMTSKTDMYRANAIRV-LCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQS 189 (869)
Q Consensus 111 l~kDl~s~n~~vr~lALr~-L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d 189 (869)
|++.|.++|..-|-.|++. ++.+..-.=+..+.+.|.+++..++.-+||-..+.+.+..+..||..--.++.+++-+.|
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d 116 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTN 116 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCC
Confidence 4555555565555555542 222211122344555555666666666666666666666666666555555666665666
Q ss_pred CChhHHHHHHHHHHHHhhcChhHHHHHHHhhccC-CCCChhHHHHHHHHHHHhhhhhcCCCCC--chhhHHHHHHHHhcC
Q 002900 190 RAALVQFHALALLHQIRQNDRLAVSKLVTSLTRG-TVRSPLAQCLLIRYTTQVIREAATTQTG--DRPFYDFLESCLRHK 266 (869)
Q Consensus 190 ~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~-~~~~~~~~v~llr~l~~~~~~~~~dp~~--~~~l~~~l~~~L~~~ 266 (869)
+||.+.+.|+..|..|+-. .-+..++..+... ...+|+.-=...=.+.+++.. +|+. ...+.+.+..+|.+.
T Consensus 117 ~Np~IRaLALRtLs~Ir~~--~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~---~pelv~~~~~~~~L~~LL~D~ 191 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVS--SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD---DMQLFYQQDFKKDLVELLNDN 191 (746)
T ss_pred CCHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---CcccccccchHHHHHHHhcCC
Confidence 6666666666666655533 2222222111100 023333221111111111111 3433 234556666777788
Q ss_pred ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHc---CCCchhHHHHHHHhcc-----------------ccCCCCCHH
Q 002900 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLS---SSKPVLRFAAVRTLNK-----------------SLISDQNRS 326 (869)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~---s~~~n~ry~aL~~l~~-----------------~~L~d~d~s 326 (869)
+++|+..|+.++..+....+..+......+..++. .-+.=.+...|+.+.+ ..|+..|.+
T Consensus 192 dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~A 271 (746)
T PTZ00429 192 NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPA 271 (746)
T ss_pred CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHH
Confidence 88888888888877742211112222222222221 1111122222332222 455667778
Q ss_pred HHHHHHHHhhccCCh---hhHHHHHHHHHH---hhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcch
Q 002900 327 IATLAITTLLKTGNE---SSVDRLMKQITN---FMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEY 400 (869)
Q Consensus 327 I~~~aL~lL~~l~~e---~nv~~Il~eL~~---y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~ 400 (869)
|..-|+.+++.+.+. +-+..+++.+.. ++...+.+.+-.+++.|..++.++|......++...-...+ ..| +
T Consensus 272 VVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~D-p~y-I 349 (746)
T PTZ00429 272 VVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSD-PPF-V 349 (746)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCC-cHH-H
Confidence 888888877777643 333444433332 34445667888888888888888876554444443333332 233 5
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC-hHHHHHHHHhhccCCCHHHHHHHH
Q 002900 401 KKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD-PSKYIRYIYNRVHLENATVRAAAV 479 (869)
Q Consensus 401 ~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~-~~~~l~~i~~~~~~e~~~vr~~~l 479 (869)
+...++.+..++. ++--+.++..|.+|..+.. .+..+.++--+|..+.+.+. ...++..+.+-+.. +..+...++
T Consensus 350 K~~KLeIL~~Lan--e~Nv~~IL~EL~eYa~d~D-~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~-~~~~v~e~i 425 (746)
T PTZ00429 350 KLEKLRLLLKLVT--PSVAPEILKELAEYASGVD-MVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR-RPELLPQVV 425 (746)
T ss_pred HHHHHHHHHHHcC--cccHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 6666666666653 4445567777777776543 34545555555555544322 34455555443322 222333456
Q ss_pred HHHHHHhccccC
Q 002900 480 STLAKFGAMVDA 491 (869)
Q Consensus 480 tal~Kl~~~~~~ 491 (869)
..+-.+.-++|+
T Consensus 426 ~vik~IlrkyP~ 437 (746)
T PTZ00429 426 TAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHCcc
Confidence 666666555664
No 17
>PRK09687 putative lyase; Provisional
Probab=99.10 E-value=1.5e-08 Score=108.90 Aligned_cols=238 Identities=20% Similarity=0.195 Sum_probs=157.9
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
..++.|.+-|.|+|..+|-.|+.+|+.+++++..+.+.. ++.|.+|.||+.|+-++..+-.... .....++.+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~----ll~~~d~~vR~~A~~aLg~lg~~~~-~~~~a~~~L~~ 97 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIE----LCSSKNPIERDIGADILSQLGMAKR-CQDNVFNILNN 97 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHH----HHhCCCHHHHHHHHHHHHhcCCCcc-chHHHHHHHHH
Confidence 455667777899999999999999999998877766544 5689999999999999999864221 11234444544
Q ss_pred H-hcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHh
Q 002900 186 A-VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLR 264 (869)
Q Consensus 186 ~-l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~ 264 (869)
+ ++|+++.|...|+..|.+++..... +.+. ..+.+...+.
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~--------------~~~~-------------------------a~~~l~~~~~ 138 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPL--------------YSPK-------------------------IVEQSQITAF 138 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccc--------------cchH-------------------------HHHHHHHHhh
Confidence 4 6788999999999999887643210 0010 0112233344
Q ss_pred cCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-------------ccCCCCCHHHHHHH
Q 002900 265 HKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------SLISDQNRSIATLA 331 (869)
Q Consensus 265 ~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-------------~~L~d~d~sI~~~a 331 (869)
+.+.-|.+.|+.++..+.+ . .++..|..+|.++++.+|+.|..+|.. ..+.|+|..||..|
T Consensus 139 D~~~~VR~~a~~aLg~~~~--~----~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND--E----AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEA 212 (280)
T ss_pred CCCHHHHHHHHHHHhccCC--H----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHH
Confidence 4455566666666655532 1 345555566666666666666555543 34678888899999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHH
Q 002900 332 ITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIV 405 (869)
Q Consensus 332 L~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv 405 (869)
+..|-+++++.-+..|++.|.. ..++..++.++|.+..+ ..+..|.+++....+-.+...++
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~------~~~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKK------GTVGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcC------CchHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChhHHHHHH
Confidence 9999899998888888877664 22677888888887652 45677777776333333433333
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.02 E-value=4.4e-08 Score=122.31 Aligned_cols=258 Identities=16% Similarity=0.175 Sum_probs=161.4
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~ 186 (869)
.++.|..-|.|+++.+|-.|+..|+.+..++.++.|. ++|.|+++.||..|+-++.++....+. .+.+..+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~----~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~ 692 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALV----AALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDH 692 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHH----HHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHH
Confidence 4466777788888888888888888888776555444 555888888888888888777432221 1233355
Q ss_pred hcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcC
Q 002900 187 VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK 266 (869)
Q Consensus 187 l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~ 266 (869)
|.+.|+.|...|+..|..+...+... ++..+. ..+++.....++.+..+ . ++ +.|...+.+.
T Consensus 693 L~~~d~~VR~~A~~aL~~~~~~~~~~---l~~~L~---D~d~~VR~~Av~aL~~~--~---~~-------~~l~~~l~D~ 754 (897)
T PRK13800 693 LGSPDPVVRAAALDVLRALRAGDAAL---FAAALG---DPDHRVRIEAVRALVSV--D---DV-------ESVAGAATDE 754 (897)
T ss_pred hcCCCHHHHHHHHHHHHhhccCCHHH---HHHHhc---CCCHHHHHHHHHHHhcc--c---Cc-------HHHHHHhcCC
Confidence 66678888888887777766444322 233232 35566666666655532 1 11 3455677788
Q ss_pred ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc------------ccCCCCCHHHHHHHHHH
Q 002900 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK------------SLISDQNRSIATLAITT 334 (869)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~------------~~L~d~d~sI~~~aL~l 334 (869)
+..|...++..+..+.+... .+...|..++.++++.+|..++..|.. ..|+|+|..+|..|+..
T Consensus 755 ~~~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGGA----PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CHHHHHHHHHHHHHhccccc----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 88888888888877743211 234556677777777788777777754 34567777777777777
Q ss_pred hhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHH
Q 002900 335 LLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIV 405 (869)
Q Consensus 335 L~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv 405 (869)
|-.++++.-+..|++-| .+.+...|..++.+++.+. - .......|...+++. +..|...++
T Consensus 831 L~~l~~~~a~~~L~~~L----~D~~~~VR~~A~~aL~~~~--~---~~~a~~~L~~al~D~-d~~Vr~~A~ 891 (897)
T PRK13800 831 LAGAAADVAVPALVEAL----TDPHLDVRKAAVLALTRWP--G---DPAARDALTTALTDS-DADVRAYAR 891 (897)
T ss_pred HHhccccchHHHHHHHh----cCCCHHHHHHHHHHHhccC--C---CHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 77777665554444433 4566677777777777751 1 122344555555543 333444444
No 19
>PRK09687 putative lyase; Provisional
Probab=98.87 E-value=3.5e-07 Score=98.49 Aligned_cols=248 Identities=14% Similarity=0.123 Sum_probs=161.9
Q ss_pred HHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhh-HHHHHHHHHHH-hcCC
Q 002900 76 TKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTL-LTQIERYLKQA-IVDK 153 (869)
Q Consensus 76 ~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~-~~~l~~~i~~~-l~d~ 153 (869)
++++.++|...|.-.--.+..+. .++..-+ +.+-++|+|+.+|-.|.++|+.++.+.- .+...+.+... +.|+
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~-~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~ 103 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRG-GQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK 103 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC-cchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Confidence 34568888887777766664443 2222222 3444688999999999999999997542 23445555555 6899
Q ss_pred ChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHH
Q 002900 154 NPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCL 233 (869)
Q Consensus 154 ~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~ 233 (869)
++.||+.|+-++.++....+.-..+.++.+..++.|.++.|...|+..|..+.. +.++..|+.-+. ..+++.-..
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~~ai~~L~~~L~---d~~~~VR~~ 178 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--EAAIPLLINLLK---DPNGDVRNW 178 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhc---CCCHHHHHH
Confidence 999999999999998654433334556667777788899999999999877663 466666666555 244543333
Q ss_pred HHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHH
Q 002900 234 LIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVR 313 (869)
Q Consensus 234 llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~ 313 (869)
.+..+..+ +.......+.|...|.+.+..|..+|+..+..+.+ . .++..|...|.+++
T Consensus 179 A~~aLg~~-------~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~----~av~~Li~~L~~~~--------- 236 (280)
T PRK09687 179 AAFALNSN-------KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K----RVLSVLIKELKKGT--------- 236 (280)
T ss_pred HHHHHhcC-------CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h----hHHHHHHHHHcCCc---------
Confidence 33333321 11233566778888888888999999999888753 1 56777666665432
Q ss_pred HhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 002900 314 TLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIR 371 (869)
Q Consensus 314 ~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~ 371 (869)
++..+++.|-.++++.-+..+.+-+.. ..|..++..++.++.
T Consensus 237 -------------~~~~a~~ALg~ig~~~a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 237 -------------VGDLIIEAAGELGDKTLLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred -------------hHHHHHHHHHhcCCHhHHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 455666677777776544444443332 236666666666654
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.86 E-value=3.1e-05 Score=100.42 Aligned_cols=495 Identities=15% Similarity=0.134 Sum_probs=273.9
Q ss_pred hhhhHHHHHhhhcCCCCCHHHHH----HHHHHHHHHHhcCCCCCccch-------------------hhhhHHHHHhhcC
Q 002900 25 EKGAVLQEARVFNDPQLDPRRCS----QVITKLLYLLNQGETFTKIEA-------------------TEVFFAVTKLFQS 81 (869)
Q Consensus 25 ~k~~~~qe~r~f~~~~~~~~k~~----~~l~kli~l~~~G~~~~~~e~-------------------s~lf~~v~kl~~s 81 (869)
+|+..+.++|.|.+.+...+++- +++-.|+.++..|..-....+ ....+.+++++.+
T Consensus 31 ~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~s 110 (2102)
T PLN03200 31 EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKS 110 (2102)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHC
Confidence 44555778888877765555422 245567766665542111111 1223344555666
Q ss_pred CCccchhHHHHHHHHhCCCc--chh---Hh----hhhHHHhhcCCCC---HHHHh---HHHHHhccCCCh---hhHHH-H
Q 002900 82 RDIGLRRMVYLMIKELSPSA--DEV---II----VTSSLMKDMTSKT---DMYRA---NAIRVLCRITDG---TLLTQ-I 142 (869)
Q Consensus 82 ~d~~lKrl~Yl~l~~~~~~~--d~~---~L----vinsl~kDl~s~n---~~vr~---lALr~L~~I~~~---~~~~~-l 142 (869)
.+.+.|.-.=-++..++..+ |.. +. ++..|..=+.+.+ ..+++ .||+.||...+. .+++. .
T Consensus 111 Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGa 190 (2102)
T PLN03200 111 GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGG 190 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCC
Confidence 66666665555554444321 221 11 2344555455543 22333 466666665542 22333 6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcC-CChhHHHHHHHHHHHHhhcChhH----
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQS-RAALVQFHALALLHQIRQNDRLA---- 212 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d-~~~~v~~~al~ll~~i~~~d~~~---- 212 (869)
.+.+.+.+.+.+|.++..|+.++.++....++... ..++.+.+++.+ .++.+..+|..+|..|+.++...
T Consensus 191 Vp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~I 270 (2102)
T PLN03200 191 VDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAI 270 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77888888999999999999999888766665433 366788888865 45689999999998888764321
Q ss_pred -----HHHHHHhhc-cC-----CCCC-------hhHHHHHHH-------HHHHhhhhh------------------cCC-
Q 002900 213 -----VSKLVTSLT-RG-----TVRS-------PLAQCLLIR-------YTTQVIREA------------------ATT- 248 (869)
Q Consensus 213 -----~~~li~~l~-~~-----~~~~-------~~~~v~llr-------~l~~~~~~~------------------~~d- 248 (869)
+..|+.-+. .. ...+ -|+.-.+-+ ++...+..+ ..+
T Consensus 271 v~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~ 350 (2102)
T PLN03200 271 ADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDS 350 (2102)
T ss_pred HHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCC
Confidence 222332111 00 0001 133332211 111100000 000
Q ss_pred CCCc------hhhHHHHHHHHhcCChH------------------------------------------HHHHHHHHHHh
Q 002900 249 QTGD------RPFYDFLESCLRHKAEM------------------------------------------VIFEAARAITE 280 (869)
Q Consensus 249 p~~~------~~l~~~l~~~L~~~~~a------------------------------------------V~~ea~~~i~~ 280 (869)
+... ......|.+++++.++. +.-.++.++.+
T Consensus 351 ~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~ 430 (2102)
T PLN03200 351 SAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSS 430 (2102)
T ss_pred chhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHH
Confidence 0000 01123445555555443 33333333333
Q ss_pred ccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhcc----------------------ccCCCCCHHHHHHHHH
Q 002900 281 LNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAIT 333 (869)
Q Consensus 281 l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~----------------------~~L~d~d~sI~~~aL~ 333 (869)
+...+.+.. ..++..|..||.+++.+++..+++.+.. ++|+.++..++..|..
T Consensus 431 L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAaw 510 (2102)
T PLN03200 431 LCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSAT 510 (2102)
T ss_pred HhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 322111111 1245577788888888887777665522 6778888889999999
Q ss_pred HhhccC-ChhhHHHHHH------HHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHH
Q 002900 334 TLLKTG-NESSVDRLMK------QITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVD 406 (869)
Q Consensus 334 lL~~l~-~e~nv~~Il~------eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~ 406 (869)
.|..++ +++++..++. -|.+.+.+.+.+.+..++.+|..++.. .+. ..+..+..+|...+. .++..++.
T Consensus 511 AL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~--~d~-~~I~~Lv~LLlsdd~-~~~~~aL~ 586 (2102)
T PLN03200 511 VLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT--ADA-ATISQLTALLLGDLP-ESKVHVLD 586 (2102)
T ss_pred HHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--cch-hHHHHHHHHhcCCCh-hHHHHHHH
Confidence 998886 4556665553 455666777788899999999998763 222 234566677765543 35555565
Q ss_pred HHHHHHHhCC--c-h-----HHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCCh-HH-----HHHHHHhhccCCCH
Q 002900 407 SIVILIRDIP--D-A-----KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP-SK-----YIRYIYNRVHLENA 472 (869)
Q Consensus 407 ~i~~ii~~~p--~-~-----~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~-~~-----~l~~i~~~~~~e~~ 472 (869)
.+..++.... + . ...++..|.+.++. ..++.+..++|+|+.+.....+. .. .+--+...+...+.
T Consensus 587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~ 665 (2102)
T PLN03200 587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSS-SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE 665 (2102)
T ss_pred HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh
Confidence 5555544211 1 1 12478888888886 45678888899999987643221 11 11122222333466
Q ss_pred HHHHHHHHHHHHHhcccc-C-----chHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 002900 473 TVRAAAVSTLAKFGAMVD-A-----LKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGS 524 (869)
Q Consensus 473 ~vr~~~ltal~Kl~~~~~-~-----l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~ 524 (869)
.+|..+-.|+..++.... + ....+...|-..+.+.|.++++-|..-+..+-.
T Consensus 666 ~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 677777777777764221 1 111223334445577889999998876544433
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.82 E-value=9.4e-07 Score=110.55 Aligned_cols=259 Identities=17% Similarity=0.175 Sum_probs=185.3
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCC
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKN 154 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~ 154 (869)
+...+.++|+.+|+..=..+..+.+. . ++..|.+-|.|+++.+|..|+.+|+.+....-. .+.+.+.|.|.+
T Consensus 626 L~~~L~D~d~~VR~~Av~~L~~~~~~--~---~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---~~~L~~~L~~~d 697 (897)
T PRK13800 626 LAPYLADPDPGVRRTAVAVLTETTPP--G---FGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---APALRDHLGSPD 697 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhhhcch--h---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---hHHHHHHhcCCC
Confidence 45667899999999998887665421 1 566778888999999999999999887432111 235666778999
Q ss_pred hHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHH
Q 002900 155 PVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLL 234 (869)
Q Consensus 155 p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~l 234 (869)
|.||..|+.++..+....+.. +..+|.|.|+.|...|+..|..+... ..+..++ . ..++......
T Consensus 698 ~~VR~~A~~aL~~~~~~~~~~-------l~~~L~D~d~~VR~~Av~aL~~~~~~--~~l~~~l---~---D~~~~VR~~a 762 (897)
T PRK13800 698 PVVRAAALDVLRALRAGDAAL-------FAAALGDPDHRVRIEAVRALVSVDDV--ESVAGAA---T---DENREVRIAV 762 (897)
T ss_pred HHHHHHHHHHHHhhccCCHHH-------HHHHhcCCCHHHHHHHHHHHhcccCc--HHHHHHh---c---CCCHHHHHHH
Confidence 999999999888775444332 33567899999999999888876432 3333332 2 3456666655
Q ss_pred HHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHH
Q 002900 235 IRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRT 314 (869)
Q Consensus 235 lr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~ 314 (869)
.+.+... . ++ ...-.+.|..++++.++.|...|+.++-.+... . .+...+...|.++++.+|..|+++
T Consensus 763 a~aL~~~-~----~~--~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~----~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 763 AKGLATL-G----AG--GAPAGDAVRALTGDPDPLVRAAALAALAELGCP-P----DDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred HHHHHHh-c----cc--cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c----hhHHHHHHHhcCCChHHHHHHHHH
Confidence 5555532 1 11 112256777888999999999999999888532 1 233556777888999999999999
Q ss_pred hcc-----------ccCCCCCHHHHHHHHHHhhccC-ChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 002900 315 LNK-----------SLISDQNRSIATLAITTLLKTG-NESSVDRLMKQITNFMSDIADEFKIVVVEAIRS 372 (869)
Q Consensus 315 l~~-----------~~L~d~d~sI~~~aL~lL~~l~-~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~ 372 (869)
|.. .+|+|+|..||+.|+..|-.+. ++.....+ ..-+.+.+.+.|.++++++..
T Consensus 831 L~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L----~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 831 LAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDAL----TTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHH----HHHHhCCCHHHHHHHHHHHhh
Confidence 876 6789999999999999998873 44433333 344456788899999998853
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.68 E-value=1.5e-05 Score=103.08 Aligned_cols=407 Identities=14% Similarity=0.094 Sum_probs=255.7
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCCCcchh------HhhhhHHHhhcCCCCHHHHhHHHHHhccCCC--hhhHH-----H
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSPSADEV------IIVTSSLMKDMTSKTDMYRANAIRVLCRITD--GTLLT-----Q 141 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~------~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~--~~~~~-----~ 141 (869)
++.++++.+...+.=.-..+..++...++. .-.+..|.+-|.++++..|-.|+++|++|.. .+... .
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 556667677766666666665666543221 2367888999999999999999999998853 22222 2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcccChH---HHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHhh-cChhHHHH
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPE---IVK--RWSNEVQEAVQSRAALVQFHALALLHQIRQ-NDRLAVSK 215 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe---~v~--~~~~~l~~~l~d~~~~v~~~al~ll~~i~~-~d~~~~~~ 215 (869)
.++.+.++|.+.++.+|+.|+-++..+....++ ++. ..++.+.++|.+.++.++..|+..|..+.. .+...+..
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 588899999999999999999999998864433 232 356677888888889899899888877754 34444544
Q ss_pred HHHhhccCCCCChhHHHHHHHHHHHhhhhh-cCCCC----CchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHh--
Q 002900 216 LVTSLTRGTVRSPLAQCLLIRYTTQVIREA-ATTQT----GDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRE-- 288 (869)
Q Consensus 216 li~~l~~~~~~~~~~~v~llr~l~~~~~~~-~~dp~----~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~-- 288 (869)
++.-+. ..++-.+...++.+..++... ..+.. ....-++.|..+|++.+..+.-+|+.++..+.....+.
T Consensus 569 Lv~LLl---sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 569 LTALLL---GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHhc---CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 544333 123334445566554332210 00000 01246788999999999999999999988775332221
Q ss_pred ---HhhHHHHHHHHHcCCCchhHHHHHHHhcc-----------------------ccCCCCCHHHHHHHHHHhhccCChh
Q 002900 289 ---LTPAITVLQLFLSSSKPVLRFAAVRTLNK-----------------------SLISDQNRSIATLAITTLLKTGNES 342 (869)
Q Consensus 289 ---~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-----------------------~~L~d~d~sI~~~aL~lL~~l~~e~ 342 (869)
...++.+|..+|++.+..++-.+-.+|.. .+|+++|..++..++..|..++...
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 23456677777777766665444333221 6678888888888888877775433
Q ss_pred -hHH-----HHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHH--H------HHHHHHHHHhhcCCcch-HHHHHHH
Q 002900 343 -SVD-----RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR--S------LMNFLSNILREEGGFEY-KKAIVDS 407 (869)
Q Consensus 343 -nv~-----~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~--~------~v~~ll~ll~~~g~~~~-~~~iv~~ 407 (869)
+.. ..+.-|.+++.+-+++-|+.++.++..||..+|.+.. . ++.-|.++|+..+...+ ..++.++
T Consensus 726 e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~ 805 (2102)
T PLN03200 726 EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEA 805 (2102)
T ss_pred hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHH
Confidence 322 3456677788888889999999999999999885431 1 23336666664332211 1235666
Q ss_pred HHHHHHh-------CCchH-----HHHHHHHHHhhhccCchhHHHHHHhhhcCCCCC--------CCChHHHHHHHHhhc
Q 002900 408 IVILIRD-------IPDAK-----ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPK--------TSDPSKYIRYIYNRV 467 (869)
Q Consensus 408 i~~ii~~-------~p~~~-----~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~--------~~~~~~~l~~i~~~~ 467 (869)
+..+.+. +|-.. ...+..|.+++ ....|.+.-+++.+|...+.. ..+.++++..+.+|+
T Consensus 806 l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (2102)
T PLN03200 806 LALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRI 884 (2102)
T ss_pred HHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHH
Confidence 6666652 11111 12445555555 335566655566665554332 234556777888887
Q ss_pred cCC-CHHHH---HHHHHHHHHH
Q 002900 468 HLE-NATVR---AAAVSTLAKF 485 (869)
Q Consensus 468 ~~e-~~~vr---~~~ltal~Kl 485 (869)
+.. +.+|| .+++-+.+|-
T Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~ 906 (2102)
T PLN03200 885 INSSSLEVKIGGTALLICAAKE 906 (2102)
T ss_pred hhcCCceEEecchhhhhhhhhh
Confidence 643 45666 3445555553
No 23
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.2e-06 Score=96.49 Aligned_cols=438 Identities=15% Similarity=0.095 Sum_probs=224.9
Q ss_pred CCCccchhhhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhC
Q 002900 19 SPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELS 98 (869)
Q Consensus 19 ~~~~~~~k~~~~qe~r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~ 98 (869)
+|+...|+--+.++++++ .++.++.-|-.++++|+|++-.|.-++-.....-+|.......|++--+.++.||-++.
T Consensus 91 ls~isedviivtsslmkD-~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~-- 167 (865)
T KOG1078|consen 91 LSKISEDVIIVTSSLMKD-MTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISF-- 167 (865)
T ss_pred ccccchhhhhhhHHHHhh-ccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccH--
Confidence 788888888899999999 66666666777799999999888744433444445545555566666666666665522
Q ss_pred CCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChh--hHHHHHHHHHH-HhcCCChHHHHHHHHHHhhhcccChHH
Q 002900 99 PSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT--LLTQIERYLKQ-AIVDKNPVVASAALVSGIHLLQTTPEI 175 (869)
Q Consensus 99 ~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~--~~~~l~~~i~~-~l~d~~p~VRk~A~lal~~L~~~~pe~ 175 (869)
+.+.==.|-++--.++.|..++.-||-.|..|+..+ ....+...... .+ ++|+-+---+-...++...++..
T Consensus 168 ---~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~--~~~~A~~~lir~~~~~l~~~~~~ 242 (865)
T KOG1078|consen 168 ---DVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSL--KSPLAVCMLIRIASELLKENQQA 242 (865)
T ss_pred ---HHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccc--cchhHHHHHHHHHHHHhhhcccc
Confidence 333444566666667777788888888888876533 22222222211 00 22221110000111223333333
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhh
Q 002900 176 VKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF 255 (869)
Q Consensus 176 v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l 255 (869)
...+.+-+..++..+..+|++-|......+....+. ...| -
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r-------------~l~p--------------------------a 283 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR-------------ELAP--------------------------A 283 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh-------------hcch--------------------------H
Confidence 334444555566666666666554443322211000 1111 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------cc-
Q 002900 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------SL- 319 (869)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------~~- 319 (869)
...++.++.+...+..|.|+|++..+....+.....|-.=|-.++++.+..+.-.|+-++.+ .+
T Consensus 284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv 363 (865)
T KOG1078|consen 284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFV 363 (865)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34566666777778888888888766433333332333334555555554554444544433 11
Q ss_pred --CCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC
Q 002900 320 --ISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (869)
Q Consensus 320 --L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~-~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g 396 (869)
++|...-|---|+..|+.. -+.--..++.-|.+-+. +-..+||+.++++|..+.+-.|.....-+..|..++.+-
T Consensus 364 ~disDeFKivvvdai~sLc~~-fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc- 441 (865)
T KOG1078|consen 364 SDISDEFKIVVVDAIRSLCLK-FPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC- 441 (865)
T ss_pred HhccccceEEeHHHHHHHHhh-ccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc-
Confidence 2333221212222222111 11111123333333333 345689999999999999988888888888888888742
Q ss_pred CcchHHHHHHHHHHHHHh-----CCchH---HHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhcc
Q 002900 397 GFEYKKAIVDSIVILIRD-----IPDAK---ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVH 468 (869)
Q Consensus 397 ~~~~~~~iv~~i~~ii~~-----~p~~~---~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~ 468 (869)
++.+..+..+..+.+. +|+.. .+-.-+|++.+..+....++..+. .|..+....-+..+.|.++++
T Consensus 442 --e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~-- 515 (865)
T KOG1078|consen 442 --EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDS-- 515 (865)
T ss_pred --cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCc--
Confidence 2433444333333333 33332 233334555555443333333322 222222222233344555443
Q ss_pred CCCHHHHHHHHHHHHHHhc-cccCchHHHHHHHHHhhcCCCHHHHHHH
Q 002900 469 LENATVRAAAVSTLAKFGA-MVDALKPRVFVLLRRCLYDGDDEVRDRA 515 (869)
Q Consensus 469 ~e~~~vr~~~ltal~Kl~~-~~~~l~~~i~~ll~~~~~d~d~evrdRA 515 (869)
+.+||-.+-- +.+... +.+++... ...+..+.-+.+.++++|+
T Consensus 516 --DdevRdrAtf-~l~~l~~~~~~l~~~-~~~l~~s~~~le~~l~~y~ 559 (865)
T KOG1078|consen 516 --DDEVRDRATF-YLKNLEEKDDVLNQN-YSGLFVSIPGLERSLVSYI 559 (865)
T ss_pred --hHHHHHHHHH-HHHHhhhhhhhhccc-ccccccccchhHHHHHHHh
Confidence 5566654322 222222 11222111 1566677778889999987
No 24
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5.6e-05 Score=87.29 Aligned_cols=260 Identities=18% Similarity=0.265 Sum_probs=171.4
Q ss_pred cCCCCHHHHhHHHHHh-ccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChh
Q 002900 115 MTSKTDMYRANAIRVL-CRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAAL 193 (869)
Q Consensus 115 l~s~n~~vr~lALr~L-~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~ 193 (869)
|.|.++-.+.=|++.+ +-|....-+..+.++|.++...+++-|||-..+-++|-.+..|++.---++..+..|.|+|+.
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQL 123 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHH
Confidence 5677777777777654 444444458889999999999999999999999999999999998766678889999999999
Q ss_pred HHHHHHHHHHHHhhcC--h---hHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCCh
Q 002900 194 VQFHALALLHQIRQND--R---LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAE 268 (869)
Q Consensus 194 v~~~al~ll~~i~~~d--~---~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~ 268 (869)
+...|+.+|..|+-+- | .++.+.+. .++|+.-=..-..+.++. ..+|+....+.+++..+|...++
T Consensus 124 iRasALRvlSsIRvp~IaPI~llAIk~~~~------D~s~yVRk~AA~AIpKLY---sLd~e~k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 124 IRASALRVLSSIRVPMIAPIMLLAIKKAVT------DPSPYVRKTAAHAIPKLY---SLDPEQKDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhc------CCcHHHHHHHHHhhHHHh---cCChhhHHHHHHHHHHHhcCCCC
Confidence 9999999999888541 1 12333333 244443211111111111 24788888999999999999999
Q ss_pred HHHHHHHHHHHhccCCChHhHhh-------------------HHHHHHHHHc--CCCchh----------------HHHH
Q 002900 269 MVIFEAARAITELNGVTNRELTP-------------------AITVLQLFLS--SSKPVL----------------RFAA 311 (869)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~-------------------a~~~L~~~L~--s~~~n~----------------ry~a 311 (869)
-|+=.|+-++-.+-...-+++-. ++..|.++.. =.+|+. .|..
T Consensus 195 lVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~ 274 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNE 274 (968)
T ss_pred cchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccc
Confidence 99888888874431101111111 1122222210 001100 0100
Q ss_pred ----------HHHhcc---ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCC
Q 002900 312 ----------VRTLNK---SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFP 378 (869)
Q Consensus 312 ----------L~~l~~---~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~ 378 (869)
++.+.+ .||...|.++-.-+-.+.+.++-...+..|++-|...+.+ +.+.+..+++.|+.++.+-|
T Consensus 275 ~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~ 353 (968)
T KOG1060|consen 275 IRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRP 353 (968)
T ss_pred cCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcch
Confidence 111111 4556666777777788888888888888888888876654 55788889999999999876
Q ss_pred ccHHHH
Q 002900 379 LKYRSL 384 (869)
Q Consensus 379 ~~~~~~ 384 (869)
.-..-+
T Consensus 354 ~lF~P~ 359 (968)
T KOG1060|consen 354 TLFEPH 359 (968)
T ss_pred hhhhhh
Confidence 544433
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00075 Score=81.87 Aligned_cols=437 Identities=15% Similarity=0.188 Sum_probs=257.7
Q ss_pred hcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhc-CCCCHHHHhHHHHHhccC-------CChhhHHHHHHHHHHHh
Q 002900 79 FQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDM-TSKTDMYRANAIRVLCRI-------TDGTLLTQIERYLKQAI 150 (869)
Q Consensus 79 ~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl-~s~n~~vr~lALr~L~~I-------~~~~~~~~l~~~i~~~l 150 (869)
+.|+|-..||=.==.+......+. +...|..=+ ++.||.+|.+|.-.+-++ .+.+.-+.+-..+..++
T Consensus 13 l~spDn~vr~~Ae~~l~~~~~~~~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~ 88 (1075)
T KOG2171|consen 13 LLSPDNEVRRQAEEALETLAKTEP----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEII 88 (1075)
T ss_pred hcCCCchHHHHHHHHHHHhhcccc----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 456666666666555544443333 223333323 578899999886444332 23555556666666666
Q ss_pred cC-CChHHHHHHHHHHhhhccc-ChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh-------HHHHHHH-hh
Q 002900 151 VD-KNPVVASAALVSGIHLLQT-TPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-------AVSKLVT-SL 220 (869)
Q Consensus 151 ~d-~~p~VRk~A~lal~~L~~~-~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~-------~~~~li~-~l 220 (869)
.+ +.+.||+|-+-.+.-+.+. .|+.=.++++-+.+++.+.|+.....|+.+|..+...-+. .+..+.. .+
T Consensus 89 ~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~ 168 (1075)
T KOG2171|consen 89 QSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM 168 (1075)
T ss_pred HhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc
Confidence 55 6799999998888877753 3442224445566677888999999998888766532111 2333332 22
Q ss_pred ccCCCCChhHHHHHHHHHHHhhhhhcCCCCCch-------hhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHH
Q 002900 221 TRGTVRSPLAQCLLIRYTTQVIREAATTQTGDR-------PFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAI 293 (869)
Q Consensus 221 ~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~-------~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~ 293 (869)
. + ..+| .-+...|.+..+......++.... .+++.+...++..+....-++..++..+-...++.+....
T Consensus 169 ~-d-~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l 245 (1075)
T KOG2171|consen 169 T-D-PSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL 245 (1075)
T ss_pred c-C-Ccch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 2 1 2334 555666766655433111333332 3445556666666665555666666555433455554433
Q ss_pred H-HHHH---HHcCC--CchhHHHHHHHhcc----------------------------ccCC---------------CCC
Q 002900 294 T-VLQL---FLSSS--KPVLRFAAVRTLNK----------------------------SLIS---------------DQN 324 (869)
Q Consensus 294 ~-~L~~---~L~s~--~~n~ry~aL~~l~~----------------------------~~L~---------------d~d 324 (869)
. +++. ...++ ++-+|-.||..+.. .... +.+
T Consensus 246 ~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~ 325 (1075)
T KOG2171|consen 246 SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETP 325 (1075)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCc
Confidence 2 2222 22222 34467777765532 1111 123
Q ss_pred HHHHHHHHHHh-hccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc----cHHHHHHHHHHHHhhcCCcc
Q 002900 325 RSIATLAITTL-LKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL----KYRSLMNFLSNILREEGGFE 399 (869)
Q Consensus 325 ~sI~~~aL~lL-~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~----~~~~~v~~ll~ll~~~g~~~ 399 (869)
..+...+|+.| ..++.+.=+..+++.+..++++.+-.+|..++.+|+.+++--++ ..+.+++..++.|.+... .
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp-r 404 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP-R 404 (1075)
T ss_pred HHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH-H
Confidence 56788888865 55666677778899999999999999999999999999884433 345666777777776543 4
Q ss_pred hHHHHHHHHHHHHHhC-CchH----HHHHHHHHHhhhccCchhHHHHH-Hhhhc--CCCCCCCChHHHHHHHHh-hc---
Q 002900 400 YKKAIVDSIVILIRDI-PDAK----ENGLLHLCEFIEDCEFTYLSTQI-LHFLG--TEGPKTSDPSKYIRYIYN-RV--- 467 (869)
Q Consensus 400 ~~~~iv~~i~~ii~~~-p~~~----~~~l~~L~~~l~~~~~~~~~~~~-l~ilG--E~~~~~~~~~~~l~~i~~-~~--- 467 (869)
|+-++.+++-|+-... |+.+ +.+...|...+++...+++...+ ..+++ |+.++. -...|+..+.+ ++
T Consensus 405 Vr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 405 VRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLMEKKLLLL 483 (1075)
T ss_pred HHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHH
Confidence 7888888998887653 5554 34555566667776666766543 33332 333221 13345555555 22
Q ss_pred -cCCCHHHHHHHHHHHHHHhcccc-Cc---hHHHHHHHHHhh----cCCCHHHHHHHHHHHHHhCC
Q 002900 468 -HLENATVRAAAVSTLAKFGAMVD-AL---KPRVFVLLRRCL----YDGDDEVRDRATLYLNTVGS 524 (869)
Q Consensus 468 -~~e~~~vr~~~ltal~Kl~~~~~-~l---~~~i~~ll~~~~----~d~d~evrdRA~~yl~ll~~ 524 (869)
...++.||.+++||++-++.... .+ .+.+...|+.++ .+...++|-...+.+.++..
T Consensus 484 ~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 484 LQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR 549 (1075)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence 23578999999999998887543 11 223444444443 33346666666677776654
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.40 E-value=0.00029 Score=82.57 Aligned_cols=334 Identities=16% Similarity=0.187 Sum_probs=196.3
Q ss_pred HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChh-h-H-----HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH
Q 002900 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT-L-L-----TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (869)
Q Consensus 105 ~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~-~-~-----~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~ 177 (869)
-=...-|++-|.|+++.+|.+|++.|+++.... . + ..+.+.|..++.|.+..|.+.|+-++.++.+.. ....
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~ 154 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLE 154 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHH
Confidence 334466778889999999999999998864322 2 1 347888899999999999999999999988643 3333
Q ss_pred HH-----HHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHH---------HHHHHhhccCCCCChhHHHHHHHHHHHhhh
Q 002900 178 RW-----SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV---------SKLVTSLTRGTVRSPLAQCLLIRYTTQVIR 243 (869)
Q Consensus 178 ~~-----~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~---------~~li~~l~~~~~~~~~~~v~llr~l~~~~~ 243 (869)
.+ ...+.+++...++.+...++.++..+....+... .+++..+. ....+.++..+.++..+..
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSELAE 231 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHHHc
Confidence 33 6777887777688888899989888877655433 23333343 2456677777776665432
Q ss_pred hhcCCCCCc-----hhhHHHHHHHHhcC------ChHHHHHHHHHHHhccCC-ChHhH---hhHHHHHHHHHcCCCchhH
Q 002900 244 EAATTQTGD-----RPFYDFLESCLRHK------AEMVIFEAARAITELNGV-TNREL---TPAITVLQLFLSSSKPVLR 308 (869)
Q Consensus 244 ~~~~dp~~~-----~~l~~~l~~~L~~~------~~aV~~ea~~~i~~l~~~-~~~~~---~~a~~~L~~~L~s~~~n~r 308 (869)
. +... ..+++.|...+.+. +...+...++.+.++... +.... ......|..++.+.|++.+
T Consensus 232 ~----~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 232 T----PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred C----hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 1 2211 23445555555432 223444445555555331 22222 2233344455666777777
Q ss_pred HHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc-cHHHHHHH
Q 002900 309 FAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL-KYRSLMNF 387 (869)
Q Consensus 309 y~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~-~~~~~v~~ 387 (869)
-.|++++. ++-... ....+| .......++.+++.+..+......++|...+.+++.+-...++ ..+.+...
T Consensus 308 ~~A~dtlg--~igst~-----~G~~~L-~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~ 379 (503)
T PF10508_consen 308 EVAFDTLG--QIGSTV-----EGKQLL-LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSI 379 (503)
T ss_pred HHHHHHHH--HHhCCH-----HHHHHH-HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 77777662 332221 111222 2345667777888888888888889999999999999654333 23333333
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHhC-CchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhh
Q 002900 388 LSNILREEGGFEYKKAIVDSIVILIRDI-PDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNR 466 (869)
Q Consensus 388 ll~ll~~~g~~~~~~~iv~~i~~ii~~~-p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~ 466 (869)
.-.....-++-... ..+..++++- ||+|-.+...|...... -|.+-+.. +-+.++.++.+|
T Consensus 380 ~~~w~~~~~~~~~~----~~l~~~~~qPF~elr~a~~~~l~~l~~~----------~Wg~~~i~----~~~gfie~lldr 441 (503)
T PF10508_consen 380 TESWYESLSGSPLS----NLLMSLLKQPFPELRCAAYRLLQALAAQ----------PWGQREIC----SSPGFIEYLLDR 441 (503)
T ss_pred HHHHHHHhcCCchH----HHHHHHhcCCchHHHHHHHHHHHHHhcC----------HHHHHHHH----hCccHHhhhcCC
Confidence 32222322222121 1555666553 67777665555443322 24443322 223567777777
Q ss_pred ccCCCH
Q 002900 467 VHLENA 472 (869)
Q Consensus 467 ~~~e~~ 472 (869)
-...+.
T Consensus 442 ~~E~~K 447 (503)
T PF10508_consen 442 STETTK 447 (503)
T ss_pred CCCCCH
Confidence 654343
No 27
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=98.37 E-value=1.1e-06 Score=82.14 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=74.9
Q ss_pred HHhhhcCCCccccCCCCCcCCCceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccceEEe
Q 002900 605 YEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVA 684 (869)
Q Consensus 605 ~~~~l~~i~~~~~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~ 684 (869)
....|.++.|++||+||+|. |- .+..|.| .|+|++.+.|++++ +|+|+++++.+.++ +++..
T Consensus 41 ~~skL~kv~QLTGfsDPvYa-----------EA--~v~v~q~--DIvLDvllvNqT~~-tLqNl~vElat~gd--Lklve 102 (140)
T PF07718_consen 41 FSSKLNKVVQLTGFSDPVYA-----------EA--YVTVHQY--DIVLDVLLVNQTNE-TLQNLTVELATLGD--LKLVE 102 (140)
T ss_pred hhhhhccEEecccCCCCeEE-----------EE--EEEEEee--eEEEEEEEEeCChh-hhhcEEEEEEecCC--cEEcc
Confidence 34678899999999999876 22 2455666 89999999999964 89999999999876 99988
Q ss_pred eccCCCCCCCCCceEEEEEecCC--CCCcccc
Q 002900 685 SKPLRSLPYDSPGQIFGAFEKPE--GVPAVGK 714 (869)
Q Consensus 685 ~i~~~~L~~~~~~~~~v~~~~~~--~~~~~~~ 714 (869)
.++.-+|+|++...+++.++... .+++.|+
T Consensus 103 ~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~ 134 (140)
T PF07718_consen 103 RPQPITLAPHGFARIKATIKVSSTETGVIFGN 134 (140)
T ss_pred CCCceeeCCCcEEEEEEEEEEEeccCCEEEEE
Confidence 88888999999988888887764 5566664
No 28
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.32 E-value=6.1e-06 Score=82.97 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=84.5
Q ss_pred CHHHHhHHHHHhc--cCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-HHHHHHHHHhcCCChhHH
Q 002900 119 TDMYRANAIRVLC--RITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-RWSNEVQEAVQSRAALVQ 195 (869)
Q Consensus 119 n~~vr~lALr~L~--~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-~~~~~l~~~l~d~~~~v~ 195 (869)
||.+|++|+.++| .++-|.++++..+.+.++|.|++|.||+.|++++.+|...+.--++ .++..+..++.|.|+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6899999999999 6888999999999999999999999999999999999876655444 444777788899999999
Q ss_pred HHHHHHHHHHhhc-ChhHHHHHHH
Q 002900 196 FHALALLHQIRQN-DRLAVSKLVT 218 (869)
Q Consensus 196 ~~al~ll~~i~~~-d~~~~~~li~ 218 (869)
..|-..+.++... ++..+...++
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~ 104 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFP 104 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999998765 5555544433
No 29
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0001 Score=84.87 Aligned_cols=333 Identities=17% Similarity=0.253 Sum_probs=210.5
Q ss_pred CCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC----------------------------------------C-Chh
Q 002900 99 PSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI----------------------------------------T-DGT 137 (869)
Q Consensus 99 ~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I----------------------------------------~-~~~ 137 (869)
+.++...+..+.|+++|.+.++..+--|++.+-.. . +..
T Consensus 13 ~~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgk 92 (948)
T KOG1058|consen 13 NSPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGK 92 (948)
T ss_pred cCCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcc
Confidence 34566778888888999888888887777654321 0 111
Q ss_pred hHHH---HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh---
Q 002900 138 LLTQ---IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL--- 211 (869)
Q Consensus 138 ~~~~---l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~--- 211 (869)
+.+. +...+++-|.|+|.|||-..+-=+.|| +.||+++.+.+.+.++|+.+++-|..+|+.+++.|-+.--.
T Consensus 93 l~~EMILvcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~p 170 (948)
T KOG1058|consen 93 LLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIP 170 (948)
T ss_pred cHHHHHHHHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcC
Confidence 2222 456778889999999999876666665 48999999999999999999999999999998888754100
Q ss_pred HHHHHHHhhc-cCCCCCh--hHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhc------CChHHHHHHHHHHHhcc
Q 002900 212 AVSKLVTSLT-RGTVRSP--LAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH------KAEMVIFEAARAITELN 282 (869)
Q Consensus 212 ~~~~li~~l~-~~~~~~~--~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~------~~~aV~~ea~~~i~~l~ 282 (869)
..-.|+.++. ....++- -+-+.|+. . || ++-++++..++.. ....|+.|-++-.++-
T Consensus 171 DapeLi~~fL~~e~DpsCkRNAFi~L~~-------~---D~---ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~- 236 (948)
T KOG1058|consen 171 DAPELIESFLLTEQDPSCKRNAFLMLFT-------T---DP---ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA- 236 (948)
T ss_pred ChHHHHHHHHHhccCchhHHHHHHHHHh-------c---CH---HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc-
Confidence 0112222221 0001111 11111111 1 33 2333444433322 2246888888887773
Q ss_pred CCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc----------------cc-CCCCCHHHHHHHHHHhhccC--Chhh
Q 002900 283 GVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------SL-ISDQNRSIATLAITTLLKTG--NESS 343 (869)
Q Consensus 283 ~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~----------------~~-L~d~d~sI~~~aL~lL~~l~--~e~n 343 (869)
.+.....-+..+-.||++.++.++|-+--++.. +| .+.+|-.++..-|+.|..+. +++-
T Consensus 237 --~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~i 314 (948)
T KOG1058|consen 237 --NPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKI 314 (948)
T ss_pred --CHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHH
Confidence 355666677777788888888898887655543 22 24555557777777776664 2333
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHhCCc
Q 002900 344 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE------GGFEYKKAIVDSIVILIRDIPD 417 (869)
Q Consensus 344 v~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~------g~~~~~~~iv~~i~~ii~~~p~ 417 (869)
...++-.+...++.-|-++|...+.-.-.|.. ......++++|-+-+... .+-.+.+..+..+.....++|+
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvs--srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS--SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhh--hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 33333344455666677899988888777776 356677778776654331 1113456667677777778999
Q ss_pred hHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCC
Q 002900 418 AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPK 452 (869)
Q Consensus 418 ~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~ 452 (869)
..+.+++.|.++|.|.+ +.+...++-++.|-.++
T Consensus 393 ~aatvV~~ll~fisD~N-~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 393 VAATVVSLLLDFISDSN-EAAASDVLMFVREAIEK 426 (948)
T ss_pred HHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHh
Confidence 99999999999998843 33444455566554444
No 30
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0003 Score=79.90 Aligned_cols=124 Identities=23% Similarity=0.288 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhcc----------
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK---------- 317 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------- 317 (869)
..+++.|..+|++.++.|+-.|+-++.++++.+.+.. ..++..|..+|..++++++-.|||++..
T Consensus 236 ~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 236 APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH
Confidence 4567889999999999999999999999976555433 2455678889999999999999998765
Q ss_pred ------------ccCC-CCCHHHHHHHHHHhhcc--CChhhHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHhh
Q 002900 318 ------------SLIS-DQNRSIATLAITTLLKT--GNESSVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLCLK 376 (869)
Q Consensus 318 ------------~~L~-d~d~sI~~~aL~lL~~l--~~e~nv~~-----Il~eL~~y~~~~~~~~r~~~v~aI~~la~k 376 (869)
.+++ .+..+||+.|-=++..+ ||.+.++. ++..|.+-+...+...|.++.-+|+.++..
T Consensus 316 ~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 4445 55566999888888777 56666664 455666667777888999999999988874
No 31
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.25 E-value=0.0023 Score=71.86 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccC----chhHHHHHHhhhcCCCCCCCCh---HHHHHHHHhh------
Q 002900 400 YKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCE----FTYLSTQILHFLGTEGPKTSDP---SKYIRYIYNR------ 466 (869)
Q Consensus 400 ~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~----~~~~~~~~l~ilGE~~~~~~~~---~~~l~~i~~~------ 466 (869)
+.+...+.+..+++.+|.+-...-+.+.+++.... -.+....++|++|||+....+. .+.++..++.
T Consensus 284 V~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~lly 363 (459)
T PF14764_consen 284 VRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLY 363 (459)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHH
Confidence 44445556777888899887666667777776532 3456778999999997765444 4554444322
Q ss_pred --cc----------CCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhc-------------CCCHHHHHHHHHHHHH
Q 002900 467 --VH----------LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLY-------------DGDDEVRDRATLYLNT 521 (869)
Q Consensus 467 --~~----------~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~-------------d~d~evrdRA~~yl~l 521 (869)
.. ...+.+=..++|+++|++.+++++.+.+.-.|.+... ..+..|..||.++++|
T Consensus 364 E~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~L 443 (459)
T PF14764_consen 364 EVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNL 443 (459)
T ss_pred HHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhhhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHH
Confidence 11 2234555788999999999999998887666665433 3358999999999999
Q ss_pred hCCC
Q 002900 522 VGSD 525 (869)
Q Consensus 522 l~~~ 525 (869)
|+.+
T Consensus 444 Lk~P 447 (459)
T PF14764_consen 444 LKMP 447 (459)
T ss_pred hcCc
Confidence 9875
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0018 Score=78.69 Aligned_cols=362 Identities=14% Similarity=0.157 Sum_probs=207.3
Q ss_pred HHHhhcCCCCHHHHhHHHHHhccCC---Chh---hHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccC---hHHH----
Q 002900 110 SLMKDMTSKTDMYRANAIRVLCRIT---DGT---LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTT---PEIV---- 176 (869)
Q Consensus 110 sl~kDl~s~n~~vr~lALr~L~~I~---~~~---~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~---pe~v---- 176 (869)
-|..-.+|+|+..|-.|++.|+++. +.. .+..+.+.+.+++.|.+.-||-.|+-|+..+.... ++.+
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~ 201 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR 201 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3444568899999999999998753 222 34477888889999976559999988888655433 4433
Q ss_pred ---HHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhh-------ccCCCCChhHHHHHHHHHHHhhhhh-
Q 002900 177 ---KRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSL-------TRGTVRSPLAQCLLIRYTTQVIREA- 245 (869)
Q Consensus 177 ---~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l-------~~~~~~~~~~~v~llr~l~~~~~~~- 245 (869)
+..++.+.+.++++|..+.-.++.+|.++....+.-+.+.+.++ -.+....+-.-+..|.++..+....
T Consensus 202 ~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap 281 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP 281 (1075)
T ss_pred HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 35666777778888888888889899888877665544433321 1111222222333333333222110
Q ss_pred ---cCCCCCchhhHHHHHHHH----------h---------cCChHHHHHHHHHH-HhccCCChHhHhhHHHHHHHHHcC
Q 002900 246 ---ATTQTGDRPFYDFLESCL----------R---------HKAEMVIFEAARAI-TELNGVTNRELTPAITVLQLFLSS 302 (869)
Q Consensus 246 ---~~dp~~~~~l~~~l~~~L----------~---------~~~~aV~~ea~~~i-~~l~~~~~~~~~~a~~~L~~~L~s 302 (869)
...+.....++..+.... + .+++.+--+|+-.+ ++|+ +..........+..+|.|
T Consensus 282 ~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~--g~~v~p~~~~~l~~~l~S 359 (1075)
T KOG2171|consen 282 AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG--GKQVLPPLFEALEAMLQS 359 (1075)
T ss_pred HHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC--hhhehHHHHHHHHHHhcC
Confidence 011112222222222211 1 12233333333322 3553 344555667777788888
Q ss_pred CCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccH-
Q 002900 303 SKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY- 381 (869)
Q Consensus 303 ~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~- 381 (869)
.+.--|.+||.++.. +.+. +=+.+ +.++++|+.-..+++.+.+...|-.+..+||.++..|++..
T Consensus 360 ~~w~~R~AaL~Als~--i~EG-------c~~~m-----~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 360 TEWKERHAALLALSV--IAEG-------CSDVM-----IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred CCHHHHHHHHHHHHH--HHcc-------cHHHH-----HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 877777777777632 1111 00000 23667888888889999999999999999999999998642
Q ss_pred ----HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCC-chHHHHHHHHHH----hhhccCchhHHHHHHhhhcCCCCC
Q 002900 382 ----RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIP-DAKENGLLHLCE----FIEDCEFTYLSTQILHFLGTEGPK 452 (869)
Q Consensus 382 ----~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p-~~~~~~l~~L~~----~l~~~~~~~~~~~~l~ilGE~~~~ 452 (869)
+.+..-|+..+.+.++..++......+.......| +.-+..+..|++ .+.....+.++..+.--||.-+..
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 33344566667767766677666666666666554 222333333333 445555666665555555554433
Q ss_pred CCC--------hHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHhc
Q 002900 453 TSD--------PSKYIRYIYNRVH-LENATVRAAAVSTLAKFGA 487 (869)
Q Consensus 453 ~~~--------~~~~l~~i~~~~~-~e~~~vr~~~ltal~Kl~~ 487 (869)
..+ -..+++.+..+-. .+.-..|.-.+-++.-++.
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR 549 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence 222 2233444443333 3455667665555444333
No 33
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0011 Score=77.31 Aligned_cols=265 Identities=18% Similarity=0.188 Sum_probs=167.7
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH
Q 002900 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (869)
Q Consensus 136 ~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~ 215 (869)
.+..--+...|++=|.|++.||---|+.++..++ .||.++.+.+++.+++..++|-+.--|+...+.+-...|..+..
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~ 179 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH 179 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH
Confidence 3455567888999999999999999999999998 89999999999999999999998887766665554444543322
Q ss_pred -------HHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCc-------hhhHHHHHHHHhc-----------CChHH
Q 002900 216 -------LVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-------RPFYDFLESCLRH-----------KAEMV 270 (869)
Q Consensus 216 -------li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~-------~~l~~~l~~~L~~-----------~~~aV 270 (869)
++.+=..| +..- ..+.+.+++.. +|... +.++..|.++..+ +.+-.
T Consensus 180 f~~~~~~lL~ek~hG-VL~~-~l~l~~e~c~~-------~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHG-VLIA-GLHLITELCKI-------SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred hhHHHHHHHhhcCCc-eeee-HHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 22221122 1111 11122222211 11111 1222222222221 23444
Q ss_pred HHHHHHHHHhccCCChHhHhhHHHHHHH-----------------------HHcCCCchhHHHHHHHhccccCCCCCHHH
Q 002900 271 IFEAARAITELNGVTNRELTPAITVLQL-----------------------FLSSSKPVLRFAAVRTLNKSLISDQNRSI 327 (869)
Q Consensus 271 ~~ea~~~i~~l~~~~~~~~~~a~~~L~~-----------------------~L~s~~~n~ry~aL~~l~~~~L~d~d~sI 327 (869)
..+..+++--+.......-.....+|.. +--.+++-+|-+|+..|.++ |..+|..|
T Consensus 251 Qi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkF-L~n~d~Ni 329 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKF-LLNRDNNI 329 (866)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHH-hcCCccce
Confidence 4555544433321111100011111211 11223445666676666644 44456679
Q ss_pred HHHHHHHhhccC--ChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHH
Q 002900 328 ATLAITTLLKTG--NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIV 405 (869)
Q Consensus 328 ~~~aL~lL~~l~--~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv 405 (869)
|-.||+.|+++. +++-|.+=-.-+.+.+.+.|..+|+.+.+-...+.. ...-..+++-|+++|... +-+++.++.
T Consensus 330 rYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~mv~eLl~fL~~~-d~~~k~~~a 406 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN--ESNVRVMVKELLEFLESS-DEDFKADIA 406 (866)
T ss_pred eeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 999999999995 555677767778888889999999999998877766 578889999999999876 456899999
Q ss_pred HHHHHHHHhC
Q 002900 406 DSIVILIRDI 415 (869)
Q Consensus 406 ~~i~~ii~~~ 415 (869)
..|..++.++
T Consensus 407 s~I~~laEkf 416 (866)
T KOG1062|consen 407 SKIAELAEKF 416 (866)
T ss_pred HHHHHHHHhc
Confidence 8888888775
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0017 Score=73.12 Aligned_cols=330 Identities=19% Similarity=0.186 Sum_probs=183.5
Q ss_pred HHhhcCCCccchhHHHHHH----HHhCCC--cchhHhhhhHHHhhc-CCCCH-----HHHhHHHHHhcc-CCChhhHHHH
Q 002900 76 TKLFQSRDIGLRRMVYLMI----KELSPS--ADEVIIVTSSLMKDM-TSKTD-----MYRANAIRVLCR-ITDGTLLTQI 142 (869)
Q Consensus 76 ~kl~~s~d~~lKrl~Yl~l----~~~~~~--~d~~~Lvinsl~kDl-~s~n~-----~vr~lALr~L~~-I~~~~~~~~l 142 (869)
.|.+..+-++-||..-+-+ +.+... .+...=+|..+-+|. .+++. -.-|+|.-++|- +.+....+.+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 3444444455444444433 122222 345566777777776 44443 344566555542 3333367888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHH----HHHHHHhcCCChhHHHHHHHH---HHHHhhcCh--hHH
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS----NEVQEAVQSRAALVQFHALAL---LHQIRQNDR--LAV 213 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~----~~l~~~l~d~~~~v~~~al~l---l~~i~~~d~--~~~ 213 (869)
.++|..++.|.+.-||-.|+-+++.+.+.....+..+. +.+..+..|.|.+|...|=.+ +-+|..+.. ..+
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCH
Confidence 99999999999999999999999977765544443344 444455567888887766322 222322211 123
Q ss_pred HHHHHhhc---cCCCCChhHHHHHHHHHHHhhhhhcCCCC-----CchhhHHHHHHHHhcCChHHHHHHHHHHH----hc
Q 002900 214 SKLVTSLT---RGTVRSPLAQCLLIRYTTQVIREAATTQT-----GDRPFYDFLESCLRHKAEMVIFEAARAIT----EL 281 (869)
Q Consensus 214 ~~li~~l~---~~~~~~~~~~v~llr~l~~~~~~~~~dp~-----~~~~l~~~l~~~L~~~~~aV~~ea~~~i~----~l 281 (869)
..+++-+. + ..+|..-..++.-+..+ .. -|. ....+++-+-.+|...++.|.--|=.++. .+
T Consensus 166 ~~~ipLL~eriy--~~n~~tR~flv~Wl~~L--ds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 166 PEFIPLLRERIY--VINPMTRQFLVSWLYVL--DS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHH--hc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 34443221 1 23455544444444322 10 121 12345555666666666666543333222 12
Q ss_pred cCCChH-hHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------------ccCCCCCH-HHHHHHHH---Hh
Q 002900 282 NGVTNR-ELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------------SLISDQNR-SIATLAIT---TL 335 (869)
Q Consensus 282 ~~~~~~-~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------------~~L~d~d~-sI~~~aL~---lL 335 (869)
.+.|.. .....++++.-=+.++++.++..||.-+.. +|+.|.+. +|+-.|-. .|
T Consensus 240 ~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 240 RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 222222 222333333333444444444433322211 67766655 56644443 45
Q ss_pred hccCChhh------HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc----HHHHHHHHHHHHhhcCCcchHHHHH
Q 002900 336 LKTGNESS------VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK----YRSLMNFLSNILREEGGFEYKKAIV 405 (869)
Q Consensus 336 ~~l~~e~n------v~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~----~~~~v~~ll~ll~~~g~~~~~~~iv 405 (869)
++++++.- +..|++-|..|+++...+-|..+++-|..+-.|+|.. .+.+..+|++-|++..+. +-.-..
T Consensus 320 ~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~-vvl~~L 398 (675)
T KOG0212|consen 320 LKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDE-VVLLAL 398 (675)
T ss_pred HHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhH-HHHHHH
Confidence 66655543 3389999999999989999999999999999999975 456677777777765543 323334
Q ss_pred HHHHHHH
Q 002900 406 DSIVILI 412 (869)
Q Consensus 406 ~~i~~ii 412 (869)
+.+..|.
T Consensus 399 ~lla~i~ 405 (675)
T KOG0212|consen 399 SLLASIC 405 (675)
T ss_pred HHHHHHh
Confidence 4444444
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.02 E-value=0.0028 Score=74.39 Aligned_cols=265 Identities=14% Similarity=0.164 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcch-hH-h----hhhHHHhhcCCCCHH
Q 002900 48 QVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE-VI-I----VTSSLMKDMTSKTDM 121 (869)
Q Consensus 48 ~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~-~~-L----vinsl~kDl~s~n~~ 121 (869)
...+.+|..+......... ...+...+...+.+++..+|+++--.+..++..++. .- + +...+..-+.++|..
T Consensus 56 ~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~ 134 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLS 134 (503)
T ss_pred HHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHH
Confidence 3355666655554422222 445566677788999999999988777666654332 11 1 223455667899999
Q ss_pred HHhHHHHHhccCCCh-hhHHHH-----HHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCC
Q 002900 122 YRANAIRVLCRITDG-TLLTQI-----ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSR 190 (869)
Q Consensus 122 vr~lALr~L~~I~~~-~~~~~l-----~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~ 190 (869)
+...|+++|.++... .-.+.+ ...+++.+...++.||.++.-.+.++...+++... .+++.+...+.++
T Consensus 135 Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d 214 (503)
T PF10508_consen 135 VAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD 214 (503)
T ss_pred HHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc
Confidence 999999999998643 344555 77788888888999999999999999988888765 3778888888888
Q ss_pred ChhHHHHHHHHHHHHhhcChhHHHHH---------HHhhc---cCCCCChhHHHHHHHHHHHhhhhhcCCCCCc----hh
Q 002900 191 AALVQFHALALLHQIRQNDRLAVSKL---------VTSLT---RGTVRSPLAQCLLIRYTTQVIREAATTQTGD----RP 254 (869)
Q Consensus 191 ~~~v~~~al~ll~~i~~~d~~~~~~l---------i~~l~---~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~----~~ 254 (869)
|..|+.+|+-+|.++... +....+| ...+. .++....+...-.+++....... +|... ..
T Consensus 215 DiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~~~p~ 290 (503)
T PF10508_consen 215 DILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLELYPA 290 (503)
T ss_pred cHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHHHHHH
Confidence 999999999999999863 3333333 32222 11102333334455555543321 33322 24
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHhccCCCh--H--------hHhhHHHHHHHHHcCCCchhHHHHHHHhcc
Q 002900 255 FYDFLESCLRHKAEMVIFEAARAITELNGVTN--R--------ELTPAITVLQLFLSSSKPVLRFAAVRTLNK 317 (869)
Q Consensus 255 l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~--~--------~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~ 317 (869)
+++.+..++.+.+....--|+-++..+..... . .+..+.........+....+|..+|+++..
T Consensus 291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~ 363 (503)
T PF10508_consen 291 FLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALAS 363 (503)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45555666666666444334444433321111 1 112233344444555666677666666543
No 36
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.027 Score=65.38 Aligned_cols=266 Identities=15% Similarity=0.224 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHH----
Q 002900 138 LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV---- 213 (869)
Q Consensus 138 ~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~---- 213 (869)
..--+...+++-+.+++-|=---|+-|+-++. .|++.+++.+.+..+|+.+.|-+.--|+.++|.+.-..|.++
T Consensus 106 vlmL~tn~~rkdl~S~n~ye~giAL~GLS~fv--TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~F 183 (877)
T KOG1059|consen 106 VLMLTTNLLRKDLNSSNVYEVGLALSGLSCIV--TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCF 183 (877)
T ss_pred HHHHHHHHHHHHhccCccchhhheeccccccc--CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhH
Confidence 44455666777777777776566666666655 899999999999999999999999999999999987766665
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHH-hcCChHHHHHHHHHHHhccCCChHhHhhH
Q 002900 214 SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCL-RHKAEMVIFEAARAITELNGVTNRELTPA 292 (869)
Q Consensus 214 ~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L-~~~~~aV~~ea~~~i~~l~~~~~~~~~~a 292 (869)
.+|...+. .+.|-.|--....+|.+.+. +|+.-=.+-+.+..+| .++|+=++..-+++|..|....+.+....
T Consensus 184 prL~EkLe---DpDp~V~SAAV~VICELArK---nPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL 257 (877)
T KOG1059|consen 184 PRLVEKLE---DPDPSVVSAAVSVICELARK---NPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL 257 (877)
T ss_pred HHHHHhcc---CCCchHHHHHHHHHHHHHhh---CCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh
Confidence 45666665 45565555555666665555 5664434444455555 45677799999999999875555554444
Q ss_pred HHHHHHHHcCCCc-hhHHHHHHHhcc----------------------ccCCCCCHHHHHHHHHHhhccC--ChhhHHHH
Q 002900 293 ITVLQLFLSSSKP-VLRFAAVRTLNK----------------------SLISDQNRSIATLAITTLLKTG--NESSVDRL 347 (869)
Q Consensus 293 ~~~L~~~L~s~~~-n~ry~aL~~l~~----------------------~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~I 347 (869)
+.+|--++.+... -+-|-.+.++.. .++.|+|..+|-+.|-.+.+++ .+..|..=
T Consensus 258 ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~ 337 (877)
T KOG1059|consen 258 IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH 337 (877)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh
Confidence 4444444433211 111221211100 2345555555555555554443 33444444
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Q 002900 348 MKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIR 413 (869)
Q Consensus 348 l~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~ 413 (869)
.+-+...+.+.|..+|..++.-+-.+..+ .....++..|+.-+..+.+-.++++++.+|+.+..
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVsk--kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVSK--KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 44455555555555555555555555543 34444455444433332222345555555555443
No 37
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0019 Score=75.61 Aligned_cols=369 Identities=15% Similarity=0.214 Sum_probs=210.1
Q ss_pred HHHHHHHHhcCCCCCccchhhhh-HHHHHhhcCCCccchhHHHHHHHHhCC--CcchhHhhhhHHHhhcCCCCHHHHhHH
Q 002900 50 ITKLLYLLNQGETFTKIEATEVF-FAVTKLFQSRDIGLRRMVYLMIKELSP--SADEVIIVTSSLMKDMTSKTDMYRANA 126 (869)
Q Consensus 50 l~kli~l~~~G~~~~~~e~s~lf-~~v~kl~~s~d~~lKrl~Yl~l~~~~~--~~d~~~Lvinsl~kDl~s~n~~vr~lA 126 (869)
+||+.|++..-+.-++-+.+.++ .-+.|=+++.|+.+|-+ ++..+.. -....--.++.+++-++|.++++|--|
T Consensus 65 lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~l---Alrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRkta 141 (734)
T KOG1061|consen 65 LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRAL---ALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTA 141 (734)
T ss_pred HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHH---HhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHH
Confidence 78999987765544444554432 22344456777765544 3422222 244556789999999999999999877
Q ss_pred HHHhccCC--ChhhHHH--HHHHHHHHhcCCChHHHHHHHHHHhhhcccChH-----HHHHHHHHHHHHhcCCChhHHHH
Q 002900 127 IRVLCRIT--DGTLLTQ--IERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-----IVKRWSNEVQEAVQSRAALVQFH 197 (869)
Q Consensus 127 Lr~L~~I~--~~~~~~~--l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe-----~v~~~~~~l~~~l~d~~~~v~~~ 197 (869)
--++.+.. +++++.. +...++.++.|.+|.|=-.|+-++.-+...+|+ +.+.+++.+.++++.-+.--+.-
T Consensus 142 a~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~ 221 (734)
T KOG1061|consen 142 AVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF 221 (734)
T ss_pred HHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH
Confidence 77777643 3445443 788899999999999999999888877766653 33455555555554433333333
Q ss_pred HHHHHHHHhhcChhHHHHHH----HhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHH----HHHhcCChH
Q 002900 198 ALALLHQIRQNDRLAVSKLV----TSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLE----SCLRHKAEM 269 (869)
Q Consensus 198 al~ll~~i~~~d~~~~~~li----~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~----~~L~~~~~a 269 (869)
.+..+..-.+.|......++ +.+......-.+..++++..+..++. ...+.++..+. .++.+.. .
T Consensus 222 IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~------~~~~~~~~K~~~pl~tlls~~~-e 294 (734)
T KOG1061|consen 222 ILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK------QVNELLFKKVAPPLVTLLSSES-E 294 (734)
T ss_pred HHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH------HHHHHHHHHhcccceeeecccc-h
Confidence 33333333344433222222 22322112233444555555443321 11112222221 1222222 4
Q ss_pred HHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCch-hHHHHHHHhcc---------------ccCCCCCHHHHHHHHH
Q 002900 270 VIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPV-LRFAAVRTLNK---------------SLISDQNRSIATLAIT 333 (869)
Q Consensus 270 V~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n-~ry~aL~~l~~---------------~~L~d~d~sI~~~aL~ 333 (869)
+.|=|.+-+.-+-..-+.. .+......|++-.||. ++..-++.+.+ .+-.+-|....++++.
T Consensus 295 ~qyvaLrNi~lil~~~p~~--~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIr 372 (734)
T KOG1061|consen 295 IQYVALRNINLILQKRPEI--LKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVR 372 (734)
T ss_pred hhHHHHhhHHHHHHhChHH--HHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHH
Confidence 4444444443221001111 1222223344445543 33333443332 3346677778899999
Q ss_pred HhhccCC-hhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q 002900 334 TLLKTGN-ESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILI 412 (869)
Q Consensus 334 lL~~l~~-e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii 412 (869)
.+..++- -+.....+..|...+..--+-...+++.-|..+--+||.+++.++..+-..+..-.+- ++-..++.|+
T Consensus 373 aig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~ep----eak~amiWil 448 (734)
T KOG1061|consen 373 AIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEP----EAKAALIWIL 448 (734)
T ss_pred HhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCCh----HHHHHHHHHH
Confidence 8877742 1222677777777665444456778889999999999999998888877666543322 2344667788
Q ss_pred HhCCchHHHHHHHHHHhhhccC
Q 002900 413 RDIPDAKENGLLHLCEFIEDCE 434 (869)
Q Consensus 413 ~~~p~~~~~~l~~L~~~l~~~~ 434 (869)
..+++.-+.+...|-.+++...
T Consensus 449 g~y~~~i~~a~elL~~f~en~~ 470 (734)
T KOG1061|consen 449 GEYAERIENALELLESFLENFK 470 (734)
T ss_pred hhhhhccCcHHHHHHHHHhhcc
Confidence 8888777777777777776644
No 38
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.80 E-value=0.036 Score=64.39 Aligned_cols=441 Identities=14% Similarity=0.164 Sum_probs=234.1
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHhc--CCCCCccchhhhhHHHHHh---------hcCCCccchhHHHHHHHHhCCC-
Q 002900 33 ARVFNDPQLDPRRCSQVITKLLYLLNQ--GETFTKIEATEVFFAVTKL---------FQSRDIGLRRMVYLMIKELSPS- 100 (869)
Q Consensus 33 ~r~f~~~~~~~~k~~~~l~kli~l~~~--G~~~~~~e~s~lf~~v~kl---------~~s~d~~lKrl~Yl~l~~~~~~- 100 (869)
+|.|.+++ ...++++-|++-...- |. +..++.|+++-. ++.....-|+++|.+. +++..
T Consensus 642 ~rEf~sPD---eemkkivLKVv~qcc~t~Gv-----~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv-~ia~Kv 712 (1172)
T KOG0213|consen 642 IREFGSPD---EEMKKIVLKVVKQCCATDGV-----EPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTV-EIAAKV 712 (1172)
T ss_pred HHhhCCCh---HHHHHHHHHHHHHHhcccCC-----CHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHH-HHHHHh
Confidence 46777654 3345556666665443 43 444444444332 3566677899999988 66643
Q ss_pred -cchhHhhhhHHHhhcCCCCHHHHhHHHHHhc----cCCChh----hHHHHHHHHHHHhcCCChHHH------HHHHHHH
Q 002900 101 -ADEVIIVTSSLMKDMTSKTDMYRANAIRVLC----RITDGT----LLTQIERYLKQAIVDKNPVVA------SAALVSG 165 (869)
Q Consensus 101 -~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~----~I~~~~----~~~~l~~~i~~~l~d~~p~VR------k~A~lal 165 (869)
.+ -.++-+..|+.|.+|.+|-++..++. +++..+ ..+.+++.|.-++.+...-+. -..+.++
T Consensus 713 G~~---~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l 789 (1172)
T KOG0213|consen 713 GSD---PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL 789 (1172)
T ss_pred Cch---HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 22 24677888999999988877665554 454444 455566666666665432222 1111222
Q ss_pred hh-hcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhh---c--ChhHHHHH----HHhhccCCCCChhH-HHHH
Q 002900 166 IH-LLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQ---N--DRLAVSKL----VTSLTRGTVRSPLA-QCLL 234 (869)
Q Consensus 166 ~~-L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~---~--d~~~~~~l----i~~l~~~~~~~~~~-~v~l 234 (869)
.+ .-+--|. +...+...|+++.+-|..+|.-++..+.. . ...-+.++ ...+. +..+.-+. ++..
T Consensus 790 g~r~kpylpq----i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg-eeypEvLgsILgA 864 (1172)
T KOG0213|consen 790 GGRVKPYLPQ----ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG-EEYPEVLGSILGA 864 (1172)
T ss_pred hhccccchHH----HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC-cccHHHHHHHHHH
Confidence 22 2122233 44455566677788887777766554432 1 00111111 11111 00111111 1233
Q ss_pred HHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChH------hHhhHHHHHHHHHcCCCchhH
Q 002900 235 IRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR------ELTPAITVLQLFLSSSKPVLR 308 (869)
Q Consensus 235 lr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~------~~~~a~~~L~~~L~s~~~n~r 308 (869)
|+.+........-.| -...+++.|.++|++...-|.-.|+.++..+.+..++ .+.-+..+|
T Consensus 865 ikaI~nvigm~km~p-Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl------------ 931 (1172)
T KOG0213|consen 865 IKAIVNVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL------------ 931 (1172)
T ss_pred HHHHHHhccccccCC-ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH------------
Confidence 333332221100112 1356778889999999889998898888766432222 111122222
Q ss_pred HHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 002900 309 FAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388 (869)
Q Consensus 309 y~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~l 388 (869)
.+|...+++|||-|.+++--++..=-=..++.-|.+-+...+-+.|.-...+|+..++.-.+ -.++..|
T Consensus 932 ---------elLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p--FtVLPal 1000 (1172)
T KOG0213|consen 932 ---------ELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP--FTVLPAL 1000 (1172)
T ss_pred ---------HHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc--hhhhHHH
Confidence 22444567788888887654433333345566666655555666777777788888774322 2333333
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhc------cCchhHHH-HHHh-hhcCCCCCCCC-hHHH
Q 002900 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIED------CEFTYLST-QILH-FLGTEGPKTSD-PSKY 459 (869)
Q Consensus 389 l~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~------~~~~~~~~-~~l~-ilGE~~~~~~~-~~~~ 459 (869)
+.=-+.. ...|++-+...+..+++...+.-..-+..++-.|+| .-+-+.-. .+-+ .||-+|.-..+ ...+
T Consensus 1001 mneYrtP-e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHL 1079 (1172)
T KOG0213|consen 1001 MNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHL 1079 (1172)
T ss_pred HhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHH
Confidence 3322211 223566666666666665444433333333333333 11222222 2333 47777766544 3456
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHH
Q 002900 460 IRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATL 517 (869)
Q Consensus 460 l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~ 517 (869)
++++..++...+|.|..+.+.++--+...-. -......+ ...+.+..--||+|-+-
T Consensus 1080 LN~iWpNIle~sPhviqa~~e~~eg~r~~Lg-~~~~~~Y~-~QGLFHParkVR~~yw~ 1135 (1172)
T KOG0213|consen 1080 LNLIWPNILETSPHVIQAFDEAMEGLRVALG-PQAMLKYC-LQGLFHPARKVRKRYWT 1135 (1172)
T ss_pred HHHhhhhhcCCChHHHHHHHHHHHHHHHHhc-hHHHHHHH-HHhccCcHHHHHHHHHH
Confidence 6777778888899998888877766544221 11222233 33456777889988443
No 39
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.79 E-value=0.013 Score=69.80 Aligned_cols=173 Identities=19% Similarity=0.226 Sum_probs=110.4
Q ss_pred HhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh-CCchHHHHHHHHHHh-h
Q 002900 353 NFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRD-IPDAKENGLLHLCEF-I 430 (869)
Q Consensus 353 ~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~-~p~~~~~~l~~L~~~-l 430 (869)
+-.+.-+++.|..+..|+|.++. .....|+.|++..+.... + -+.-..+.++.++.. .++.....+...+.. +
T Consensus 864 eaf~sp~edvksAAs~ALGsl~v---gnl~~yLpfil~qi~sqp-k-~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~ 938 (1233)
T KOG1824|consen 864 EAFNSPSEDVKSAASYALGSLAV---GNLPKYLPFILEQIESQP-K-RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLF 938 (1233)
T ss_pred HHcCCChHHHHHHHHHHhhhhhc---CchHhHHHHHHHHHhcch-H-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 33455678899999999999997 567788999999887532 1 123346667766654 233322333333332 3
Q ss_pred hccC--chhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcc-cc-C----chHHHHHHHHH
Q 002900 431 EDCE--FTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAM-VD-A----LKPRVFVLLRR 502 (869)
Q Consensus 431 ~~~~--~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~-~~-~----l~~~i~~ll~~ 502 (869)
.+|+ ....+..++-++|.-.-. +|..++-.+-....-+.+.+|+..++| .||... .| - +++.|...+.
T Consensus 939 k~cE~~eegtR~vvAECLGkL~l~--epesLlpkL~~~~~S~a~~~rs~vvsa-vKfsisd~p~~id~~lk~~ig~fl~- 1014 (1233)
T KOG1824|consen 939 KHCECAEEGTRNVVAECLGKLVLI--EPESLLPKLKLLLRSEASNTRSSVVSA-VKFSISDQPQPIDPLLKQQIGDFLK- 1014 (1233)
T ss_pred HhcccchhhhHHHHHHHhhhHHhC--ChHHHHHHHHHHhcCCCcchhhhhhhe-eeeeecCCCCccCHHHHHHHHHHHH-
Confidence 3443 223455678888887654 788888888777778899999988875 455442 12 2 3445555554
Q ss_pred hhcCCCHHHHHHHHHHHHHhCCCCCCCcchhhhhhhh
Q 002900 503 CLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFL 539 (869)
Q Consensus 503 ~~~d~d~evrdRA~~yl~ll~~~~~~~~~~~~~~~~l 539 (869)
...|.|.+||.-|...++-.-++. +.+++.++
T Consensus 1015 ~~~dpDl~VrrvaLvv~nSaahNK-----pslIrDll 1046 (1233)
T KOG1824|consen 1015 LLRDPDLEVRRVALVVLNSAAHNK-----PSLIRDLL 1046 (1233)
T ss_pred HHhCCchhHHHHHHHHHHHHHccC-----HhHHHHHH
Confidence 568999999988886554333332 45666654
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0074 Score=69.19 Aligned_cols=404 Identities=14% Similarity=0.151 Sum_probs=239.6
Q ss_pred cCCCccchhHHHHHHHHhCC-----C-cchhHhhhhHHHhhcCCCCHHHHh---HHHHHhccCCChhhHHHHHHHHHHHh
Q 002900 80 QSRDIGLRRMVYLMIKELSP-----S-ADEVIIVTSSLMKDMTSKTDMYRA---NAIRVLCRITDGTLLTQIERYLKQAI 150 (869)
Q Consensus 80 ~s~d~~lKrl~Yl~l~~~~~-----~-~d~~~Lvinsl~kDl~s~n~~vr~---lALr~L~~I~~~~~~~~l~~~i~~~l 150 (869)
.+.+...|.+.=|.++.-.. . ++..--+=+.+.+-+-++++.+|+ .-+.++.+..+-..-+.+.+.+.++|
T Consensus 58 ~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L 137 (885)
T KOG2023|consen 58 KSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELL 137 (885)
T ss_pred cccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHh
Confidence 56777778888888875332 1 455677788888999999999985 55677777777777788899999999
Q ss_pred cCCChHHHHHHHHHHhhhcccChHHHH---------HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhH----HHHHH
Q 002900 151 VDKNPVVASAALVSGIHLLQTTPEIVK---------RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA----VSKLV 217 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~~~pe~v~---------~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~----~~~li 217 (869)
...+....--|.-|+-|++++.++... -++++........+|....+|+..+...-.....+ +.+.+
T Consensus 138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl 217 (885)
T KOG2023|consen 138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFL 217 (885)
T ss_pred cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence 888877888888899999999888765 25677777777888999999988876554332233 34444
Q ss_pred Hhhc-cCCCCChhHHHHHHHHHHHhhh--hhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCC--hHhHhhH
Q 002900 218 TSLT-RGTVRSPLAQCLLIRYTTQVIR--EAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVT--NRELTPA 292 (869)
Q Consensus 218 ~~l~-~~~~~~~~~~v~llr~l~~~~~--~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~--~~~~~~a 292 (869)
..+- .....+|-..-++-|-+..++. .+..-|. -..++++.....+..+..|.+||+..-+.+...| ...+.+-
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 4221 0113445443333333332211 1111121 2334445555556678889999999998885433 1212111
Q ss_pred H-HHHHHHHcCCCchhHHHHHHHhc---c---ccCCCCCHHHH----HHHHHHhhccCChhhHHHHHHHHHHhhhhc---
Q 002900 293 I-TVLQLFLSSSKPVLRFAAVRTLN---K---SLISDQNRSIA----TLAITTLLKTGNESSVDRLMKQITNFMSDI--- 358 (869)
Q Consensus 293 ~-~~L~~~L~s~~~n~ry~aL~~l~---~---~~L~d~d~sI~----~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~--- 358 (869)
. ..+-.++++ .+|.-.+.+- . ..+.|.+..|| +.+...+-.. .+ +| -.+=.+.
T Consensus 297 l~kliPvLl~~----M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~-----~~---~e-DdddDe~DDd 363 (885)
T KOG2023|consen 297 LDKLIPVLLSG----MVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGED-----AD---DE-DDDDDEDDDD 363 (885)
T ss_pred HHHHHHHHHcc----CccccccHHHhcCccccccCCchhhhccchhhhchhccCccc-----cc---cc-cccccccccc
Confidence 1 111222221 2232222110 0 23334444444 2222211111 10 00 0000000
Q ss_pred ----cHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHh-----CCchHHHHHHHH
Q 002900 359 ----ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE---EGGFEYKKAIVDSIVILIRD-----IPDAKENGLLHL 426 (869)
Q Consensus 359 ----~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~---~g~~~~~~~iv~~i~~ii~~-----~p~~~~~~l~~L 426 (869)
+=++|+-...++..++.-|+.. +++.++.+|+. .....++++.+-++-.|.+. +|.+- ..+..|
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~~e---lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l 439 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFGDE---LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFL 439 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhHHH---HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHH
Confidence 1147888999999999877653 45556666554 23455777777777776653 34333 345666
Q ss_pred HHhhhccCchhHHHHHHhhhcCCCCCCC--ChHHHH----HHHHhhccCCCHHHHHHHHHHHHHHhccc-cCchHHHHHH
Q 002900 427 CEFIEDCEFTYLSTQILHFLGTEGPKTS--DPSKYI----RYIYNRVHLENATVRAAAVSTLAKFGAMV-DALKPRVFVL 499 (869)
Q Consensus 427 ~~~l~~~~~~~~~~~~l~ilGE~~~~~~--~~~~~l----~~i~~~~~~e~~~vr~~~ltal~Kl~~~~-~~l~~~i~~l 499 (869)
.+.+.| +.+-++.-.+|-++.|++... .+.+++ .-+.+++...+.-||-++.+|++-+-... +++-+....+
T Consensus 440 ~~~L~D-KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~I 518 (885)
T KOG2023|consen 440 LSLLDD-KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYI 518 (885)
T ss_pred HHHhcc-CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 666666 455566667999999998652 243554 45566777788999999999998875543 4555555555
Q ss_pred HHH
Q 002900 500 LRR 502 (869)
Q Consensus 500 l~~ 502 (869)
|+.
T Consensus 519 L~~ 521 (885)
T KOG2023|consen 519 LDQ 521 (885)
T ss_pred HHH
Confidence 543
No 41
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.053 Score=61.45 Aligned_cols=375 Identities=17% Similarity=0.207 Sum_probs=217.7
Q ss_pred HhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cchhH----hhhhHHHhhcCCCCHHHHhHH---HH
Q 002900 57 LNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVI----IVTSSLMKDMTSKTDMYRANA---IR 128 (869)
Q Consensus 57 ~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~----Lvinsl~kDl~s~n~~vr~lA---Lr 128 (869)
+.+|.+-.. =+..+...|..+|+..|...|--+.-.+-.+++- ..+.+ .+-..+.|=..|++..+|+.| -|
T Consensus 72 iaLg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdR 150 (675)
T KOG0212|consen 72 IALGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDR 150 (675)
T ss_pred HHhccccHH-HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHH
Confidence 445653111 1334556677788877776553333222222221 11111 222345566677888888776 35
Q ss_pred HhccCCChhh----HHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHH--H---HHHHHHHHHHhcCCChhHHHHHH
Q 002900 129 VLCRITDGTL----LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI--V---KRWSNEVQEAVQSRAALVQFHAL 199 (869)
Q Consensus 129 ~L~~I~~~~~----~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~--v---~~~~~~l~~~l~d~~~~v~~~al 199 (869)
.+-.|..++- ++.+++-++.-+...+|+.|..-+-=+..| ...|+. + ..+++.+-.+|.|..+.|..-+=
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L-ds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL-DSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHH
Confidence 5666665554 677888888888999999997655444444 445543 3 36778888889998887763322
Q ss_pred ----HHHHHHhhcChhH--HHHHHHhhc-cCCCCChhHHHHHHHHHHHhhhhhcCCCCC----chhhHHHHHHHHhcCCh
Q 002900 200 ----ALLHQIRQNDRLA--VSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTG----DRPFYDFLESCLRHKAE 268 (869)
Q Consensus 200 ----~ll~~i~~~d~~~--~~~li~~l~-~~~~~~~~~~v~llr~l~~~~~~~~~dp~~----~~~l~~~l~~~L~~~~~ 268 (869)
..|.+|+. +|.. +..+++-+. .-..+.|..|.+.+.-+..|..-. |.. ...++..+.+++.++.+
T Consensus 230 t~l~~fL~eI~s-~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~---g~~~l~~~s~il~~iLpc~s~~e~ 305 (675)
T KOG0212|consen 230 TLLSEFLAEIRS-SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP---GRDLLLYLSGILTAILPCLSDTEE 305 (675)
T ss_pred HHHHHHHHHHhc-CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC---CcchhhhhhhhhhhcccCCCCCcc
Confidence 24566663 3333 222333221 111467888888877777665431 211 12334445556666655
Q ss_pred HHHHHHHHHHH----hccCCC----hHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------------cc
Q 002900 269 MVIFEAARAIT----ELNGVT----NRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------------SL 319 (869)
Q Consensus 269 aV~~ea~~~i~----~l~~~~----~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------------~~ 319 (869)
+-.++++..+- .+-+.. .-...+.+.+|.+.+++..-..|.++|.-+.. .-
T Consensus 306 ~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 54444444432 221110 11234778899999998888899998865432 33
Q ss_pred CCCCCHHHHHHHHHHhhccCChhhHHHHHH---HHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC
Q 002900 320 ISDQNRSIATLAITTLLKTGNESSVDRLMK---QITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (869)
Q Consensus 320 L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~---eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g 396 (869)
|+|++-.+-.++|.++-.+|+.++-....+ .|.+-..+...-.+.....-|+.+|... ..+.+...+..+|..+.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL--~aE~IYr~~a~ILe~e~ 463 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL--NAERIYRSIADILEREE 463 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh--CHHHHHHHHHHHHhccc
Confidence 577777899999999999998876543333 3333222323334555555667777653 34455666777777777
Q ss_pred CcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHH
Q 002900 397 GFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQ 441 (869)
Q Consensus 397 ~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~ 441 (869)
+..+...+|+.+-.++-..||+.+ ++...+-+..++...+++.
T Consensus 464 nl~FAstMV~~Ln~iLlTStELf~--LR~~Lk~lsn~es~~lF~c 506 (675)
T KOG0212|consen 464 NLKFASTMVQALNTILLTSTELFQ--LRNKLKDLSNEESQNLFCC 506 (675)
T ss_pred cchHHHHHHHHHHhhhcccHHHHH--HHHHHHhccChhhhHHHHH
Confidence 778888888887777766676643 3333333334445555544
No 42
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.65 E-value=0.012 Score=65.59 Aligned_cols=195 Identities=21% Similarity=0.144 Sum_probs=112.8
Q ss_pred hhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHh
Q 002900 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI 150 (869)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l 150 (869)
..-.+.+++.+++...|.-...++..+. ..-++..+.+-+.|.++.+|..|..+|+.+++++.++.+...+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~-- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG-----SEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN-- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc--
Confidence 3445666677777777766666654432 234566677777777777777777777777777777777666644
Q ss_pred cCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChh-
Q 002900 151 VDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPL- 229 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~- 229 (869)
|.+.+||+.|+.++.++... .. +..+.+.+++.+..+ +...+ . ...|
T Consensus 117 -d~~~~vR~~aa~aL~~~~~~--~a----~~~l~~~l~~~~~~~---a~~~~-----~-----------------~~~~~ 164 (335)
T COG1413 117 -DENEGVRAAAARALGKLGDE--RA----LDPLLEALQDEDSGS---AAAAL-----D-----------------AALLD 164 (335)
T ss_pred -CCcHhHHHHHHHHHHhcCch--hh----hHHHHHHhccchhhh---hhhhc-----c-----------------chHHH
Confidence 77777777777777777632 22 333344445544444 11111 0 0011
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHH
Q 002900 230 AQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRF 309 (869)
Q Consensus 230 ~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry 309 (869)
.....+..+..+ .+| .....+...+.+...-|...|+.++..+.... ..+...+...++..+.++|.
T Consensus 165 ~r~~a~~~l~~~-----~~~----~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~ 231 (335)
T COG1413 165 VRAAAAEALGEL-----GDP----EAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRK 231 (335)
T ss_pred HHHHHHHHHHHc-----CCh----hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHH
Confidence 111222222211 123 33456666777777788888888888775321 23445566666666666666
Q ss_pred HHHHHhcc
Q 002900 310 AAVRTLNK 317 (869)
Q Consensus 310 ~aL~~l~~ 317 (869)
.++..+..
T Consensus 232 ~~~~~l~~ 239 (335)
T COG1413 232 AALLALGE 239 (335)
T ss_pred HHHHHhcc
Confidence 66666543
No 43
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=97.61 E-value=0.00056 Score=61.34 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=74.9
Q ss_pred cccccc--chHHHhhhcCCCceeEEEEeCCCCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcE-EE
Q 002900 756 MKVGVS--NFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVK-VL 832 (869)
Q Consensus 756 ~p~~~~--~F~~~W~~l~~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~-vl 832 (869)
+|..++ +|-++|.+++ +|...+..-.+..++.+..+.+.+.+|+++++-.. . -..+||+..++.. +|
T Consensus 1 RPl~isTeeFG~~W~s~~--~e~k~~l~~~~~~t~~~~l~~l~~~l~lh~VevIg---~-----E~I~A~~ll~~~~~~L 70 (104)
T PF14807_consen 1 RPLQISTEEFGQLWLSFS--NERKQNLPSSSQRTLPEFLQRLQQKLRLHVVEVIG---N-----EGIFACQLLNSSPVCL 70 (104)
T ss_pred CCccccHHHHHHHHHcCC--CeEEEeccccCcCCHHHHHHHHHHhcCceEEEEeC---c-----cceeeeeccCCCCeEE
Confidence 466663 8999999986 44444543235667889999999999999998442 1 4568999998776 99
Q ss_pred EEEEeeccCCCeeEEEEEEecCCcchHHHHHHHHh
Q 002900 833 VRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 867 (869)
Q Consensus 833 v~~~~~~~~~~~~~~~~~vRs~~~~v~~~l~~~l~ 867 (869)
+.+++. . + .+.+++||.++.+++.|+..+.
T Consensus 71 ~H~~~~--~--~-~l~l~vrs~~~~l~d~ll~~~~ 100 (104)
T PF14807_consen 71 LHCRVN--A--G-TLDLWVRSSDSPLTDCLLYQCQ 100 (104)
T ss_pred EEEEec--C--C-eEEEEEEcCCCCcHHHHHHHHH
Confidence 999983 2 3 7999999999999999987764
No 44
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.61 E-value=0.072 Score=66.73 Aligned_cols=128 Identities=13% Similarity=0.201 Sum_probs=96.2
Q ss_pred CccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChh--h--HHHHHHHHHHHhcCCChHHH
Q 002900 83 DIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT--L--LTQIERYLKQAIVDKNPVVA 158 (869)
Q Consensus 83 d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~--~--~~~l~~~i~~~l~d~~p~VR 158 (869)
++.--++.|.|+....+-....=-..+.|..-+..+-.-+|.-|||+|+.|...+ + -+.+-..|..-+.|++..||
T Consensus 793 d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVR 872 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVR 872 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHH
Confidence 4455567777774433322222223344444566788899999999999986533 2 23456666777799999999
Q ss_pred HHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh
Q 002900 159 SAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 159 k~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~ 210 (869)
-+|+-=+.|....+||.+.++.+.+.+-+.|...+|.=+++-.+.+||...|
T Consensus 873 EAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 873 EAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 9999999998888999999999999999999888999999999999986543
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.00027 Score=61.79 Aligned_cols=84 Identities=23% Similarity=0.242 Sum_probs=62.7
Q ss_pred hHHHhhc-CCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHh
Q 002900 109 SSLMKDM-TSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (869)
Q Consensus 109 nsl~kDl-~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l 187 (869)
..|.+-| +++|+.+|..|+++|+.+++++..+. +.+.+.|++|.||..|+.++.++- .|+ .++.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~i~--~~~----~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPA----LIELLKDEDPMVRRAAARALGRIG--DPE----AIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHH----HHHHHTSSSHHHHHHHHHHHHCCH--HHH----THHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHH----HHHHHcCCCHHHHHHHHHHHHHhC--CHH----HHHHHHHHH
Confidence 4567777 89999999999999999998866554 455559999999999999999984 344 444455555
Q ss_pred cC-CChhHHHHHHHHH
Q 002900 188 QS-RAALVQFHALALL 202 (869)
Q Consensus 188 ~d-~~~~v~~~al~ll 202 (869)
.+ .+..|..+|+..|
T Consensus 72 ~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 72 QDDDDEVVREAAAEAL 87 (88)
T ss_dssp TC-SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhhc
Confidence 54 4456667666554
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.60 E-value=0.023 Score=63.24 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=91.2
Q ss_pred CCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcC-CCCHHHHhHHHHHhccCCChhhHHH
Q 002900 63 FTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMT-SKTDMYRANAIRVLCRITDGTLLTQ 141 (869)
Q Consensus 63 ~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~-s~n~~vr~lALr~L~~I~~~~~~~~ 141 (869)
++..+....+....+++.+.++.+|.....++..+-.. + ++-.+.+-+. |+|..+|..|.++|+.++++.-+..
T Consensus 67 l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-~----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~ 141 (335)
T COG1413 67 LGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDP-E----AVPPLVELLENDENEGVRAAAARALGKLGDERALDP 141 (335)
T ss_pred HhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-h----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHH
Confidence 33446677788889999999999999998888665422 1 2223333333 8999999999999999999987666
Q ss_pred HHHHHHHHhcCCC----------h--HHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 142 IERYLKQAIVDKN----------P--VVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 142 l~~~i~~~l~d~~----------p--~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
++..+ .|.. + .||..|+.++..+- +|+.+.. +...+.+.+..|..+|...|..+..+
T Consensus 142 l~~~l----~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--~~~~~~~----l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 142 LLEAL----QDEDSGSAAAALDAALLDVRAAAAEALGELG--DPEAIPL----LIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHh----ccchhhhhhhhccchHHHHHHHHHHHHHHcC--ChhhhHH----HHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 65555 5544 2 57777777777765 4444433 33445566667778887777777655
No 47
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.02 Score=68.34 Aligned_cols=134 Identities=21% Similarity=0.256 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCC-CCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHH
Q 002900 50 ITKLLYLLNQGE-TFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIR 128 (869)
Q Consensus 50 l~kli~l~~~G~-~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr 128 (869)
+|||+|++..-+ .+-..+|--.-..+.|=++++|..+|-+.-=++ .....++..--+.+++++-++|+++++|..|.=
T Consensus 71 lKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~l-s~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aal 149 (757)
T COG5096 71 LKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTL-SLLRVKELLGNIIDPIKKLLTDPHAYVRKTAAL 149 (757)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 899999877543 122235555566677888999999998887777 445567788899999999999999999999999
Q ss_pred HhccCC--ChhhHHHH--HHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHh
Q 002900 129 VLCRIT--DGTLLTQI--ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (869)
Q Consensus 129 ~L~~I~--~~~~~~~l--~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l 187 (869)
++.++- +++++... +...+.++.|.+|.|-+.|+.++.-++ |+....|..++...+
T Consensus 150 av~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~---~e~a~~~~~~~~~~i 209 (757)
T COG5096 150 AVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEID---PELAHGYSLEVILRI 209 (757)
T ss_pred HHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc---hhhhhhHHHHHHHHh
Confidence 998874 67777665 555555566999999999999987775 444455555444433
No 48
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.50 E-value=0.12 Score=62.03 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=84.0
Q ss_pred HHHHH-hhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhc--CCCccchhHHHHHHHHhCC----Cc
Q 002900 29 VLQEA-RVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQ--SRDIGLRRMVYLMIKELSP----SA 101 (869)
Q Consensus 29 ~~qe~-r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~--s~d~~lKrl~Yl~l~~~~~----~~ 101 (869)
++.++ |-..++-+........+.-...+.. ..++..+-..++..+++-.. ..+--.|+--|-..+..+- -+
T Consensus 735 iL~~ii~ll~Spllqg~al~~~l~~f~alV~--t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~ 812 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLLQGGALSALLLFFQALVI--TKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP 812 (1233)
T ss_pred hHHHHHHHhhCccccchHHHHHHHHHHHHHh--cCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc
Confidence 45554 3444444444433333333333333 33455554444444433332 2232344444432222221 15
Q ss_pred chhHhhhhHHHhhcC--CCCHHHHhHHHHHhccCCC---hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcc
Q 002900 102 DEVIIVTSSLMKDMT--SKTDMYRANAIRVLCRITD---GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (869)
Q Consensus 102 d~~~Lvinsl~kDl~--s~n~~vr~lALr~L~~I~~---~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~ 170 (869)
+..-=.+-.+.+|+. ..|.-+|-+|+-.+|.++- ..-.+.+..-|.+++++++.-|+++|+.|++.+.-
T Consensus 813 ~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 813 QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 666666677888887 4567999999999998764 33456677788999999999999999999999875
No 49
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.2 Score=58.01 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=142.8
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhh----------------HHHHH--hhcC---------------
Q 002900 35 VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVF----------------FAVTK--LFQS--------------- 81 (869)
Q Consensus 35 ~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf----------------~~v~k--l~~s--------------- 81 (869)
.+.+.++-..-...++.|||=.+..|...++.|..=+- +...| .-.+
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 77788888788888999999999999766655533111 00000 0000
Q ss_pred -----CCccchhHHHHHHHHhCCC-cchh-HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhh------HHHHHHHHHH
Q 002900 82 -----RDIGLRRMVYLMIKELSPS-ADEV-IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTL------LTQIERYLKQ 148 (869)
Q Consensus 82 -----~d~~lKrl~Yl~l~~~~~~-~d~~-~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~------~~~l~~~i~~ 148 (869)
++-.+||-.--++-.+++- .++. -.+---|+.-|.+.+-.+|-.++-++|-|...-| .+.+++++.+
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~ 441 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS 441 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 0134566655555444443 4443 3444455556677777888777777776654332 4457888888
Q ss_pred HhcCCChHHHHHHHHHHhhhc----ccCh-HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhH----HHHHHHh
Q 002900 149 AIVDKNPVVASAALVSGIHLL----QTTP-EIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA----VSKLVTS 219 (869)
Q Consensus 149 ~l~d~~p~VRk~A~lal~~L~----~~~p-e~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~----~~~li~~ 219 (869)
+|.|+.|.||+-++-++.|.. ...+ +..+..+..+...+-|+|--|+-+|.+++..+-.+-... +.+++.+
T Consensus 442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~ 521 (885)
T KOG2023|consen 442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQ 521 (885)
T ss_pred HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 888888888888777777533 2223 344456666666666788888888877765444321111 1223332
Q ss_pred hc-----cCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHH---HhcC--ChHHHHHHHHHHHh-cc----CC
Q 002900 220 LT-----RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESC---LRHK--AEMVIFEAARAITE-LN----GV 284 (869)
Q Consensus 220 l~-----~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~---L~~~--~~aV~~ea~~~i~~-l~----~~ 284 (869)
+. |. -.+-...-..++.+.........+|...+.++..|... |++. +--=++||...+-. +. ..
T Consensus 522 l~~af~kYQ-~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~ 600 (885)
T KOG2023|consen 522 LVFAFGKYQ-KKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPY 600 (885)
T ss_pred HHHHHHHHh-hcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhcccccc
Confidence 21 11 12222222344444433222234555555555444332 2232 22456777766642 21 12
Q ss_pred ChHhHhhHHHHHH
Q 002900 285 TNRELTPAITVLQ 297 (869)
Q Consensus 285 ~~~~~~~a~~~L~ 297 (869)
......+++.+++
T Consensus 601 ~~~Vy~Rc~~il~ 613 (885)
T KOG2023|consen 601 AQPVYQRCFRILQ 613 (885)
T ss_pred CHHHHHHHHHHHH
Confidence 2344556666555
No 50
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.48 E-value=0.18 Score=58.89 Aligned_cols=265 Identities=13% Similarity=0.171 Sum_probs=152.3
Q ss_pred hhhHHHHHHHHhc--CChHHHHHHHHHHHh-ccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc------------
Q 002900 253 RPFYDFLESCLRH--KAEMVIFEAARAITE-LNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK------------ 317 (869)
Q Consensus 253 ~~l~~~l~~~L~~--~~~aV~~ea~~~i~~-l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~------------ 317 (869)
+.+++-+..-+++ ...+|.+-+.-++.. +..--...+.+.+..+...|+++.+.+|--|++.+.+
T Consensus 758 E~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~ 837 (1172)
T KOG0213|consen 758 ERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEK 837 (1172)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHH
Confidence 4444444444443 445677766666652 2211122334455555566788888888877776654
Q ss_pred ----------ccCCCCCHHHHHHHHHHhhccCChh-------hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc-
Q 002900 318 ----------SLISDQNRSIATLAITTLLKTGNES-------SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL- 379 (869)
Q Consensus 318 ----------~~L~d~d~sI~~~aL~lL~~l~~e~-------nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~- 379 (869)
..|...++.+----|..+..++|.- -+..|+..|.--+..........-|.-+|.+|.+-|+
T Consensus 838 ~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~ 917 (1172)
T KOG0213|consen 838 LMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY 917 (1172)
T ss_pred HHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc
Confidence 3445555555444444444444333 2334444444444445555666666666666666554
Q ss_pred --cHHHHHHH---HHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccC-chhHH-HHHHhhhcCCCCC
Q 002900 380 --KYRSLMNF---LSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCE-FTYLS-TQILHFLGTEGPK 452 (869)
Q Consensus 380 --~~~~~v~~---ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~-~~~~~-~~~l~ilGE~~~~ 452 (869)
..+|+ .. |+++|..- ..++...+++.+--|.+... -..++..|++.++.-+ ...+. ..++-++||++.
T Consensus 918 v~aREWM-RIcfeLlelLkah-kK~iRRaa~nTfG~IakaIG--PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~- 992 (1172)
T KOG0213|consen 918 VSAREWM-RICFELLELLKAH-KKEIRRAAVNTFGYIAKAIG--PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG- 992 (1172)
T ss_pred CCHHHHH-HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcC--HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC-
Confidence 33443 22 44444431 22344555555544443221 2346667777765422 22233 236788999863
Q ss_pred CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCch----HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 002900 453 TSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALK----PRVFVLLRRCLYDGDDEVRDRATLYLNTVGSD 525 (869)
Q Consensus 453 ~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~----~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~ 525 (869)
|...+-.+.|.+-.....||..+|.|+.-+|....++. -.+..+|+-++.|.|.--|+-|.-..+-+..+
T Consensus 993 ---pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 993 ---PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred ---chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 44566678888877788999999999998877544332 24677888899999999999888665555444
No 51
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=97.47 E-value=0.00052 Score=63.58 Aligned_cols=101 Identities=14% Similarity=0.238 Sum_probs=68.2
Q ss_pred cchHHHhhhcCCCceeEEEEeCCCCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEEeecc
Q 002900 761 SNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGID 840 (869)
Q Consensus 761 ~~F~~~W~~l~~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~~~~~ 840 (869)
++|.++|.+++..++.+-.+.+.....-.+++.+.++..|+..+-... + +.....+++|++..+|..+|+.+.+..+
T Consensus 10 ~~F~~~W~sl~~~~~~e~~~~~~~~~~~~~~i~~~L~~~nI~~iA~~~-~--~~~~~~~y~s~~~~~~~~fL~El~~~~~ 86 (114)
T PF09066_consen 10 EEFQEMWKSLPDSNQQELSIQLNASVPSPDAIEEKLQANNIFTIASGK-V--DNGQKFFYFSAKTTNGIWFLVELTIDPG 86 (114)
T ss_dssp HHHHHHHHHS-GGG--EEEEEETT----HHHHHHHHHCTT-EEEEEEE-C--TT-EEEEEEEEEBTTS-EEEEEEEE-TT
T ss_pred HHHHHHHHhCCcccceEEEEeccccCCcHHHHHHHHHHCCEEEEecCC-C--CccccEEEEEEEcCCCcEEEEEEEEcCC
Confidence 489999999985552233444431222356788999999999887543 1 1147789999999888888888877433
Q ss_pred CCCeeEEEEEEecCCcchHHHHHHHHh
Q 002900 841 GPKEVAMKLAVRSEDDNVSDMIHEIVA 867 (869)
Q Consensus 841 ~~~~~~~~~~vRs~~~~v~~~l~~~l~ 867 (869)
+..+++++||+++.++..+.+++.
T Consensus 87 ---~~~~~v~vK~~~~~~~~~f~~~~~ 110 (114)
T PF09066_consen 87 ---SPSVKVTVKSENPEMAPLFLQLFE 110 (114)
T ss_dssp ----SSEEEEEEESSCCCHHHHHHHHH
T ss_pred ---CccEEEEEecCCHHHHHHHHHHHH
Confidence 447899999999999999988774
No 52
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.40 E-value=0.095 Score=63.13 Aligned_cols=276 Identities=16% Similarity=0.175 Sum_probs=148.6
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccCCCh-----hhHH-HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHH----HH
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRITDG-----TLLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI----VK 177 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I~~~-----~~~~-~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~----v~ 177 (869)
+..|.+=|.+.|+....+++++|.++... .|.+ .+++.+.+.+...++-++..|+-.++.|.- +++. ++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence 34455666788999999999999887532 2332 267778888888888899999988888763 4443 22
Q ss_pred -HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh--------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCC
Q 002900 178 -RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL--------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATT 248 (869)
Q Consensus 178 -~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~--------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~d 248 (869)
.+++.+..++.+.+ ....++.+|+.++..|+- .+..++..+..+ +.+=.++.++.++..+. .+
T Consensus 371 ~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~--~~~~v~~eliaL~iNLa----~~ 442 (708)
T PF05804_consen 371 LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN--SEEEVQLELIALLINLA----LN 442 (708)
T ss_pred CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC--CCccccHHHHHHHHHHh----cC
Confidence 47788888887653 444588899999876431 122223322211 11112233333333221 13
Q ss_pred CCCchhhH-----H-HHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCC
Q 002900 249 QTGDRPFY-----D-FLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISD 322 (869)
Q Consensus 249 p~~~~~l~-----~-~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d 322 (869)
++..+.+. + .+...++ ....+++..+|.|...+..........+..|...+.+.+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~-~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~------------------ 503 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALK-TRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGD------------------ 503 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHh-cccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC------------------
Confidence 33322221 2 2223333 334667777777765532111222223333333333322
Q ss_pred CCHHHHHHHHHHhhccCCh-hhHHHHHHH--HHHhhh------hccHHHHHHHHHHHHHHHhhCCccHHHH-----HHHH
Q 002900 323 QNRSIATLAITTLLKTGNE-SSVDRLMKQ--ITNFMS------DIADEFKIVVVEAIRSLCLKFPLKYRSL-----MNFL 388 (869)
Q Consensus 323 ~d~sI~~~aL~lL~~l~~e-~nv~~Il~e--L~~y~~------~~~~~~r~~~v~aI~~la~k~~~~~~~~-----v~~l 388 (869)
+.++.-.+|-+|-.+... -+...++++ +..|+. ...+++.-++|.-+|.+|. .+..+.++ +..+
T Consensus 504 -~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~L 581 (708)
T PF05804_consen 504 -SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTL 581 (708)
T ss_pred -cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHH
Confidence 344555555555555422 244555542 333332 3466788899999998885 34444433 5666
Q ss_pred HHHHhhcC-CcchHHHHHHHHHHHHH
Q 002900 389 SNILREEG-GFEYKKAIVDSIVILIR 413 (869)
Q Consensus 389 l~ll~~~g-~~~~~~~iv~~i~~ii~ 413 (869)
..+|+... +.++--.++.++-+++.
T Consensus 582 i~LL~~kqeDdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 582 IELLNAKQEDDEIVLQILYVFYQLLF 607 (708)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHc
Confidence 66666432 22233344444444443
No 53
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.013 Score=62.86 Aligned_cols=291 Identities=15% Similarity=0.113 Sum_probs=162.9
Q ss_pred HHhhcCCCccchhHHHHHHHHhCCCc--chh---HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhH-------HHHH
Q 002900 76 TKLFQSRDIGLRRMVYLMIKELSPSA--DEV---IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLL-------TQIE 143 (869)
Q Consensus 76 ~kl~~s~d~~lKrl~Yl~l~~~~~~~--d~~---~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~-------~~l~ 143 (869)
.-++||.+....+-+--++..++-.- ..+ ++--.-|...+..++-.+||+|..++.++.+.+-. ..+.
T Consensus 91 l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 91 LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchh
Confidence 34568888888877777776666532 222 22233366777788888999999999987665422 1233
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhhc---ccChHHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcC----------
Q 002900 144 RYLKQAIVDKNPVVASAALVSGIHLL---QTTPEIVK-RWSNEVQEAVQSRAALVQFHALALLHQIRQND---------- 209 (869)
Q Consensus 144 ~~i~~~l~d~~p~VRk~A~lal~~L~---~~~pe~v~-~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d---------- 209 (869)
+ +.++-+.++-.||+.|.-+++.+- .....++. .-++-+.+++...|+.|++.+...+..|.-..
T Consensus 171 p-ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 171 P-LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred h-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 3 344667788899999888777543 33334443 34456677888889999999888877775321
Q ss_pred hhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhh-----HHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 002900 210 RLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF-----YDFLESCLRHKAEMVIFEAARAITELNGV 284 (869)
Q Consensus 210 ~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l-----~~~l~~~L~~~~~aV~~ea~~~i~~l~~~ 284 (869)
|.-+.+|+.-+. ..++-++|+.--.+..+. . |.+....+ ++.+..+|++..--.+.+.+-||-.++-.
T Consensus 250 p~lv~~Lv~Lmd---~~s~kvkcqA~lALrnla-s---dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 250 PKLVPALVDLMD---DGSDKVKCQAGLALRNLA-S---DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred cchHHHHHHHHh---CCChHHHHHHHHHHhhhc-c---cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 111222332222 355666665422222210 1 22222222 34566677776666777777777444211
Q ss_pred C--hHhH--hhHHHHHHHHHcCCCch-hHHHHHHHhccccCCCCCHHHHHHHHHHhhccC--ChhhHHHH-----HHHHH
Q 002900 285 T--NREL--TPAITVLQLFLSSSKPV-LRFAAVRTLNKSLISDQNRSIATLAITTLLKTG--NESSVDRL-----MKQIT 352 (869)
Q Consensus 285 ~--~~~~--~~a~~~L~~~L~s~~~n-~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~I-----l~eL~ 352 (869)
| ..++ .....+|..+|...+++ ++..|..++ -.++ .+.|+..| +..+.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL--------------------rnLAasse~n~~~i~esgAi~kl~ 382 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL--------------------RNLAASSEHNVSVIRESGAIPKLI 382 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHH--------------------HHHhhhhhhhhHHHhhcCchHHHH
Confidence 1 1111 13456677777776654 555554443 3332 34444433 22333
Q ss_pred HhhhhccHHHHHHHHHHHHHHHhhCCccH----HHHHHHHHHHHhh
Q 002900 353 NFMSDIADEFKIVVVEAIRSLCLKFPLKY----RSLMNFLSNILRE 394 (869)
Q Consensus 353 ~y~~~~~~~~r~~~v~aI~~la~k~~~~~----~~~v~~ll~ll~~ 394 (869)
..+.+.+-+++.++--.|+.|+..--.+. .-+++.|+.+..+
T Consensus 383 eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 383 ELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGS 428 (550)
T ss_pred HHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCc
Confidence 34445666777777777777765322221 1235555555443
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.17 Score=58.14 Aligned_cols=158 Identities=13% Similarity=0.127 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCCCCccc---hhhhhHHHHHhhc-CCCccchhHHHHHHHHhCCC-cchhHhh-----hhHHHhhcCC
Q 002900 48 QVITKLLYLLNQGETFTKIE---ATEVFFAVTKLFQ-SRDIGLRRMVYLMIKELSPS-ADEVIIV-----TSSLMKDMTS 117 (869)
Q Consensus 48 ~~l~kli~l~~~G~~~~~~e---~s~lf~~v~kl~~-s~d~~lKrl~Yl~l~~~~~~-~d~~~Lv-----insl~kDl~s 117 (869)
.+..++--+.+.+.. +..+ .+.+....++.+. ..++.++--.=-+++.++-. ++..-.+ +--|.+=+.|
T Consensus 85 ~a~~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s 163 (514)
T KOG0166|consen 85 TATQAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS 163 (514)
T ss_pred HHHHHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC
Confidence 335555555666553 3333 3345555556665 34466655555555555542 2222222 2225667788
Q ss_pred CCHHHHhHHHHHhccCCChh-hHHH------HHHHHHHHhcCCCh-HHHHHHHHHHhhhccc-Ch----HHHHHHHHHHH
Q 002900 118 KTDMYRANAIRVLCRITDGT-LLTQ------IERYLKQAIVDKNP-VVASAALVSGIHLLQT-TP----EIVKRWSNEVQ 184 (869)
Q Consensus 118 ~n~~vr~lALr~L~~I~~~~-~~~~------l~~~i~~~l~d~~p-~VRk~A~lal~~L~~~-~p----e~v~~~~~~l~ 184 (869)
+++.++..|.=+||+|.+.. .++. +..++...+....+ ...|.|.-++-.|++. +| +.+...++.+.
T Consensus 164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~ 243 (514)
T KOG0166|consen 164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALL 243 (514)
T ss_pred CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 88888888888888876543 2222 34445555555554 5666777777777763 23 56677888888
Q ss_pred HHhcCCChhHHHHHHHHHHHHh
Q 002900 185 EAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 185 ~~l~d~~~~v~~~al~ll~~i~ 206 (869)
.++.+.|+.|+..|.-++..+.
T Consensus 244 ~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 244 RLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHhcCCHHHHHHHHHHHHHHh
Confidence 8888888888877766665554
No 55
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.061 Score=60.92 Aligned_cols=265 Identities=17% Similarity=0.159 Sum_probs=153.2
Q ss_pred hhcChhHHHHHHHhhc-cCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 002900 206 RQNDRLAVSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGV 284 (869)
Q Consensus 206 ~~~d~~~~~~li~~l~-~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~ 284 (869)
-..|+.++..+.+-+. |-+....+.++..-|.++.+.... ..|+..+..+..|..+|++...+..|.|+|.+-.+...
T Consensus 255 l~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 255 LKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 3445555544444332 111233566677777777643221 13444455667788889999999999999999888644
Q ss_pred ChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------ccCCCCCHHHHHHHHHHhhccC--ChhhHHHH
Q 002900 285 TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------SLISDQNRSIATLAITTLLKTG--NESSVDRL 347 (869)
Q Consensus 285 ~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~I 347 (869)
.++....|-.-+..++++.+.++.--|+-+|.+ .+++|-.-..|..+++.+=.+| =++--..+
T Consensus 334 ~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 334 YPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred CCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 455444455556777877777776666766654 2222221112222222222222 23444455
Q ss_pred HHHHHHhh-hhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH-hCCchHH--HHH
Q 002900 348 MKQITNFM-SDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIR-DIPDAKE--NGL 423 (869)
Q Consensus 348 l~eL~~y~-~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~-~~p~~~~--~~l 423 (869)
+.-|..-+ .+-..+||+.+|++|..+.+..|+..+..+..|-.++.+- ++.+-.+ +|..|+- .-|...+ .-+
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDc---ey~~I~v-rIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDC---EYHQITV-RILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhc---chhHHHH-HHHHHhcccCCCCCCcchHH
Confidence 55554432 3556799999999999999999999999999999999853 3434344 5555553 3454432 233
Q ss_pred HHHHHhhhccCchhHHHHHHhhhcCCCCCCCChH--HHHHHHHhhc-cCCCHHHHH
Q 002900 424 LHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPS--KYIRYIYNRV-HLENATVRA 476 (869)
Q Consensus 424 ~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~--~~l~~i~~~~-~~e~~~vr~ 476 (869)
.+.++.+- .+..-++.++.-.|..||-...++. +-+..+..|. ...+.+||-
T Consensus 490 rhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRd 544 (898)
T COG5240 490 RHIYNRLI-LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRD 544 (898)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHH
Confidence 44443321 1224456667788888887766532 2223333332 344566664
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.29 Score=57.64 Aligned_cols=424 Identities=13% Similarity=0.122 Sum_probs=217.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCccchhh-hhHHHHHhhcCCCccchhHHHHHHHHhCCC----------------c---
Q 002900 42 DPRRCSQVITKLLYLLNQGETFTKIEATE-VFFAVTKLFQSRDIGLRRMVYLMIKELSPS----------------A--- 101 (869)
Q Consensus 42 ~~~k~~~~l~kli~l~~~G~~~~~~e~s~-lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~----------------~--- 101 (869)
+.+-+.+++.-+..+|++-|+|=.-=|-. +|.--++.|-|.+.+++-.+-=||+.++++ +
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 55656677777777777665332212333 677677788899999999998899855541 1
Q ss_pred ---------chhHhhhhHHHh-----hcCCCCHH-HHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q 002900 102 ---------DEVIIVTSSLMK-----DMTSKTDM-YRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGI 166 (869)
Q Consensus 102 ---------d~~~Lvinsl~k-----Dl~s~n~~-vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~ 166 (869)
+.+-...+.|.| |-.+=||. --|--|-.++.....+|++.+.+.|++.+..++..=|-.|++|..
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFG 389 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHH
Confidence 233455677777 22233442 335557777888899999999999999999999999999999999
Q ss_pred hhccc-ChHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHH------H----HHHhhccC---CCCCh
Q 002900 167 HLLQT-TPEI----VKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS------K----LVTSLTRG---TVRSP 228 (869)
Q Consensus 167 ~L~~~-~pe~----v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~------~----li~~l~~~---~~~~~ 228 (869)
.+... .|+. +...++.+..+++|+.-.|--.+--.|+.|...-+.+.. . ++..+... .....
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~C 469 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVC 469 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHH
Confidence 87641 2332 235666777777776655655555566666654332211 0 11111100 01223
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCC--chhhH-HHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCc
Q 002900 229 LAQCLLIRYTTQVIREAATTQTG--DRPFY-DFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKP 305 (869)
Q Consensus 229 ~~~v~llr~l~~~~~~~~~dp~~--~~~l~-~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~ 305 (869)
|+...+-.-+..-... .++. ...++ .++..+|.-++ .....++
T Consensus 470 WAf~~Laea~~eA~~s---~~qt~~~t~~y~~ii~~Ll~~td-------------------------------r~dgnqs 515 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVS---NGQTDPATPFYEAIIGSLLKVTD-------------------------------RADGNQS 515 (859)
T ss_pred HHHHHHHHHHHHhccC---CCCCCccchhHHHHHHHHHhhcc-------------------------------ccccchh
Confidence 4433332222211100 1000 01111 12222221110 0011233
Q ss_pred hhHHHHHHHhcc---ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHh----hC
Q 002900 306 VLRFAAVRTLNK---SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSD-IADEFKIVVVEAIRSLCL----KF 377 (869)
Q Consensus 306 n~ry~aL~~l~~---~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~-~~~~~r~~~v~aI~~la~----k~ 377 (869)
|+|-+|-.+|.. .+=++-.+.+....+-++-++.+-=. .++..+... .-.++...+...++.+-. +.
T Consensus 516 NLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~-----~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~ 590 (859)
T KOG1241|consen 516 NLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS-----SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDI 590 (859)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-----HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 444333333221 00011111222222222222111000 112111110 011223333333333333 55
Q ss_pred CccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHH----HHHHhhhccCchhHHHHHHhhhcCCCCCC
Q 002900 378 PLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLL----HLCEFIEDCEFTYLSTQILHFLGTEGPKT 453 (869)
Q Consensus 378 ~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~----~L~~~l~~~~~~~~~~~~l~ilGE~~~~~ 453 (869)
++..+.++..+++++...++-.+.+++.-.|-.++..-..-.+.-.. .|..-+..+.+..+...+.-++|.-+...
T Consensus 591 ~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 56667777777787877555557777776776666543222222222 33333445566667777778888765443
Q ss_pred CC-----hHHHHHHHHhhccCC--CHHHHHHHHHHHHHHhcccc-Cc---hHHHHHHHHHhh
Q 002900 454 SD-----PSKYIRYIYNRVHLE--NATVRAAAVSTLAKFGAMVD-AL---KPRVFVLLRRCL 504 (869)
Q Consensus 454 ~~-----~~~~l~~i~~~~~~e--~~~vr~~~ltal~Kl~~~~~-~l---~~~i~~ll~~~~ 504 (869)
.+ ..+++..+.+.+..+ +-.||-+++++++-++..-. ++ ...+..+|+.+.
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22 224445555444322 34678899999998887542 22 246677777665
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.15 E-value=0.11 Score=59.06 Aligned_cols=199 Identities=16% Similarity=0.090 Sum_probs=111.6
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~ 186 (869)
++..+.+-|.++++.+|.-|.++|+.|+.+...+.|.+.+ .|.+|.||..++-++.. ....| . +.+..+
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L----~~~~p~vR~aal~al~~-r~~~~--~----~~L~~~ 155 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLL----AASEPPGRAIGLAALGA-HRHDP--G----PALEAA 155 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHh----cCCChHHHHHHHHHHHh-hccCh--H----HHHHHH
Confidence 4777777777888878888888888888777666555544 77788888766643333 22221 1 223345
Q ss_pred hcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcC
Q 002900 187 VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK 266 (869)
Q Consensus 187 l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~ 266 (869)
|.|.++.|...|+..|..+...+. + ..|...+.+.
T Consensus 156 L~d~d~~Vra~A~raLG~l~~~~a--~-------------------------------------------~~L~~al~d~ 190 (410)
T TIGR02270 156 LTHEDALVRAAALRALGELPRRLS--E-------------------------------------------STLRLYLRDS 190 (410)
T ss_pred hcCCCHHHHHHHHHHHHhhccccc--h-------------------------------------------HHHHHHHcCC
Confidence 567777777777777766654311 1 1122234555
Q ss_pred ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchh--HHHHHHHhcc---------ccCCCCCHHHHHHHHHHh
Q 002900 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVL--RFAAVRTLNK---------SLISDQNRSIATLAITTL 335 (869)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~--ry~aL~~l~~---------~~L~d~d~sI~~~aL~lL 335 (869)
++.|...|+..+..+.. . .+...+..+...+..-. +..++..+.. .+++|++ +++-++..|
T Consensus 191 ~~~VR~aA~~al~~lG~--~----~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~Al 262 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGS--R----LAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAV 262 (410)
T ss_pred CHHHHHHHHHHHHHcCC--H----hHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHH
Confidence 66666666666655532 1 23344444333332221 1122221111 3345544 777777777
Q ss_pred hccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHh
Q 002900 336 LKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCL 375 (869)
Q Consensus 336 ~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~ 375 (869)
-+++++.-+..+++.+.. +.+++.+-.++..+.-
T Consensus 263 G~lg~p~av~~L~~~l~d------~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 263 GLVGDVEAAPWCLEAMRE------PPWARLAGEAFSLITG 296 (410)
T ss_pred HHcCCcchHHHHHHHhcC------cHHHHHHHHHHHHhhC
Confidence 777887777777665432 2255555555555543
No 58
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.9 Score=53.17 Aligned_cols=352 Identities=16% Similarity=0.185 Sum_probs=185.8
Q ss_pred CCccchhHHHHHHHHhCCC--cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHH
Q 002900 82 RDIGLRRMVYLMIKELSPS--ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVAS 159 (869)
Q Consensus 82 ~d~~lKrl~Yl~l~~~~~~--~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk 159 (869)
+....=||.|+|+.-+--. +.++ +|- .+--.-+.-.+-=+++.+|-+= ..++...+...|++=|.+++|---.
T Consensus 55 kKKYV~KLlyI~llg~dIdFGhmEa---V~L-Lss~kysEKqIGYl~is~L~n~-n~dl~klvin~iknDL~srn~~fv~ 129 (938)
T KOG1077|consen 55 KKKYVCKLLYIYLLGYDIDFGHMEA---VNL-LSSNKYSEKQIGYLFISLLLNE-NSDLMKLVINSIKNDLSSRNPTFVC 129 (938)
T ss_pred hHHHHHHHHHHHHhcCccccchHHH---HHH-hhcCCccHHHHhHHHHHHHHhc-chHHHHHHHHHHHhhhhcCCcHHHH
Confidence 4455667899998543111 2222 111 1111112224444555555443 2667777888888888999998888
Q ss_pred HHHHHHhhhcccChHHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHhhc-C---h-hHHHHHHHhhc---cCC----
Q 002900 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAA---LVQFHALALLHQIRQN-D---R-LAVSKLVTSLT---RGT---- 224 (869)
Q Consensus 160 ~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~---~v~~~al~ll~~i~~~-d---~-~~~~~li~~l~---~~~---- 224 (869)
-|+.|+..+- .-|..+.+.+.+.++|-+.+. .=+.+|+++|...+.. | + .-..+++.-+. .|.
T Consensus 130 LAL~~I~niG--~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~ 207 (938)
T KOG1077|consen 130 LALHCIANIG--SREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAA 207 (938)
T ss_pred HHHHHHHhhc--cHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeeh
Confidence 8999988876 345566777788888765543 3467888888776643 1 1 11222222111 110
Q ss_pred ----------------CCChhHHHHHHHHHHHhhhhhc--------CCCCCchhhHHHHHHHHh---cCChHHHHHHHHH
Q 002900 225 ----------------VRSPLAQCLLIRYTTQVIREAA--------TTQTGDRPFYDFLESCLR---HKAEMVIFEAARA 277 (869)
Q Consensus 225 ----------------~~~~~~~v~llr~l~~~~~~~~--------~dp~~~~~l~~~l~~~L~---~~~~aV~~ea~~~ 277 (869)
-.-+.+.-.+.|++... ..+. +.|=..-++++.|..+=. .++.+-++|+...
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~-~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~ 286 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVV-GTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLER 286 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhc-ccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence 11122222222322210 0000 011111122222222111 1233556666666
Q ss_pred HHhccCCChH---hH-hhHHHH-----HH-HHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHH
Q 002900 278 ITELNGVTNR---EL-TPAITV-----LQ-LFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRL 347 (869)
Q Consensus 278 i~~l~~~~~~---~~-~~a~~~-----L~-~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~I 347 (869)
|+.....+++ .. +.|.+. +. .+...+++++---+...|. .+|++....||-+||+-+.+||+.+-....
T Consensus 287 iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg-~fls~rE~NiRYLaLEsm~~L~ss~~s~da 365 (938)
T KOG1077|consen 287 ILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLG-QFLSHRETNIRYLALESMCKLASSEFSIDA 365 (938)
T ss_pred HHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHhhcccccchhhhHHHHHHHHhccchHHH
Confidence 6654321111 00 111111 10 1112333332111111111 567777777999999999999877655554
Q ss_pred HHH----HHHhhh-hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCC---chH
Q 002900 348 MKQ----ITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIP---DAK 419 (869)
Q Consensus 348 l~e----L~~y~~-~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p---~~~ 419 (869)
++. +.+-+. +-|..+|+.+++-+-.+|.+ +....+++-|++.|.. .+|..+++++--+.-+.+++- +..
T Consensus 366 vK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtDy~Wy 442 (938)
T KOG1077|consen 366 VKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATDYSWY 442 (938)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCCcchh
Confidence 442 333344 67888999999999999986 7888999999999986 467788887755544444432 223
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhh
Q 002900 420 ENGLLHLCEFIEDCEFTYLSTQILHF 445 (869)
Q Consensus 420 ~~~l~~L~~~l~~~~~~~~~~~~l~i 445 (869)
..++-.|++.-.|....++--+++.+
T Consensus 443 VdviLqLiriagd~vsdeVW~RvvQi 468 (938)
T KOG1077|consen 443 VDVILQLIRIAGDYVSDEVWYRVVQI 468 (938)
T ss_pred HHHHHHHHHHhcccccHHHHHHhhee
Confidence 44555555554444444444444433
No 59
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.01 E-value=0.0041 Score=65.11 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=109.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcC--CCCCccchhhh---hHHHHHhhcCCCccchhHHHHHHHHhCCC-----cchhHh
Q 002900 37 NDPQLDPRRCSQVITKLLYLLNQG--ETFTKIEATEV---FFAVTKLFQSRDIGLRRMVYLMIKELSPS-----ADEVII 106 (869)
Q Consensus 37 ~~~~~~~~k~~~~l~kli~l~~~G--~~~~~~e~s~l---f~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-----~d~~~L 106 (869)
.+++-+=.++.++|.+|-.+...| .++...-...+ ...+++.+.+.+..+=+-.-.+++.++.. ...+-.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 345556666677788888887777 22222111112 24566677777777767776666666542 234567
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhh-HHHH-HHHHHHHhcCCChHHHHHHHHHHhhhcccCh---H------H
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTL-LTQI-ERYLKQAIVDKNPVVASAALVSGIHLLQTTP---E------I 175 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~-~~~l-~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p---e------~ 175 (869)
..+.|.+=+.+++..+|..|-++|-.|...-- ...+ .+.+..++.|++|-||..++.++..+....+ . .
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 78899999999999999998888877655433 3445 7888889999999999999999998887766 2 1
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 176 VKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 176 v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
++.+.+.+..++.|.++.|..+|-.++..+.+.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 356888888999999999999998887776554
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.98 E-value=0.37 Score=55.27 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=75.9
Q ss_pred cCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCC-ChHHH
Q 002900 80 QSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDK-NPVVA 158 (869)
Q Consensus 80 ~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~-~p~VR 158 (869)
--.|+.-|-+|-=.+..++.-..+. -.+.+++-|++|.+|++|--.-|+.+-+.+.-=++++.+.+..+..++ +.--|
T Consensus 256 ided~~~r~~g~eii~nL~~~~Gl~-~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aR 334 (975)
T COG5181 256 IDEDLKRRCMGREIILNLVYRCGLG-FSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEAR 334 (975)
T ss_pred cCccHHHhcccHHHHHHHHHHhccc-eeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhh
Confidence 3445555545533332322222222 245688999999999999888888877766666677777777777664 55555
Q ss_pred HHHHHHHhhhccc----ChHHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHh
Q 002900 159 SAALVSGIHLLQT----TPEIVKRWSNEVQEAVQSRAA---LVQFHALALLHQIR 206 (869)
Q Consensus 159 k~A~lal~~L~~~----~pe~v~~~~~~l~~~l~d~~~---~v~~~al~ll~~i~ 206 (869)
.+.+-++-++... --..+..++..+.+++.|+.- ++..||++.|.+..
T Consensus 335 hTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~ 389 (975)
T COG5181 335 HTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELV 389 (975)
T ss_pred chhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhc
Confidence 5555544443321 112234677777788777643 55667776666654
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.97 E-value=0.087 Score=59.83 Aligned_cols=217 Identities=16% Similarity=0.118 Sum_probs=117.0
Q ss_pred CCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHH
Q 002900 152 DKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQ 231 (869)
Q Consensus 152 d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~ 231 (869)
+.++-|+..|++++.... .|.. ++.+.+.+.|.++.|...+...|.++... .+...|+.-+. ...|+..
T Consensus 66 d~~~ev~~~aa~al~~~~--~~~~----~~~L~~~L~d~~~~vr~aaa~ALg~i~~~--~a~~~L~~~L~---~~~p~vR 134 (410)
T TIGR02270 66 ADEPGRVACAALALLAQE--DALD----LRSVLAVLQAGPEGLCAGIQAALGWLGGR--QAEPWLEPLLA---ASEPPGR 134 (410)
T ss_pred CCChhHHHHHHHHHhccC--ChHH----HHHHHHHhcCCCHHHHHHHHHHHhcCCch--HHHHHHHHHhc---CCChHHH
Confidence 455566655555544322 2222 23333444555555666665555555433 33333433333 2334444
Q ss_pred HHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHH
Q 002900 232 CLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAA 311 (869)
Q Consensus 232 v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~a 311 (869)
...+..+... . .+| .+.+...|++.++.|.-+|++++..+... .+...|...+.+.++.+|..|
T Consensus 135 ~aal~al~~r--~--~~~------~~~L~~~L~d~d~~Vra~A~raLG~l~~~------~a~~~L~~al~d~~~~VR~aA 198 (410)
T TIGR02270 135 AIGLAALGAH--R--HDP------GPALEAALTHEDALVRAAALRALGELPRR------LSESTLRLYLRDSDPEVRFAA 198 (410)
T ss_pred HHHHHHHHhh--c--cCh------HHHHHHHhcCCCHHHHHHHHHHHHhhccc------cchHHHHHHHcCCCHHHHHHH
Confidence 3333333210 0 022 45677788899999999999999988532 345556677899999999999
Q ss_pred HHHhcc-----------ccCCCCCHHHHHHHHHHhhcc-CChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc
Q 002900 312 VRTLNK-----------SLISDQNRSIATLAITTLLKT-GNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL 379 (869)
Q Consensus 312 L~~l~~-----------~~L~d~d~sI~~~aL~lL~~l-~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~ 379 (869)
+..+.. .+..+++...+.... .++.+ +++ +++..|...+.+ ...+..++.++|.+.. |.
T Consensus 199 ~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~-~~lal~~~~----~a~~~L~~ll~d--~~vr~~a~~AlG~lg~--p~ 269 (410)
T TIGR02270 199 LEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLL-VLLAVAGGP----DAQAWLRELLQA--AATRREALRAVGLVGD--VE 269 (410)
T ss_pred HHHHHHcCCHhHHHHHHHHHhccCccHHHHHH-HHHHhCCch----hHHHHHHHHhcC--hhhHHHHHHHHHHcCC--cc
Confidence 888744 123334433433333 33444 444 333334443333 3378888888887754 33
Q ss_pred cHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q 002900 380 KYRSLMNFLSNILREEGGFEYKKAIVDSIVIL 411 (869)
Q Consensus 380 ~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~i 411 (869)
.+..|+..+.+. + +...+-+.+..|
T Consensus 270 ----av~~L~~~l~d~--~-~aR~A~eA~~~I 294 (410)
T TIGR02270 270 ----AAPWCLEAMREP--P-WARLAGEAFSLI 294 (410)
T ss_pred ----hHHHHHHHhcCc--H-HHHHHHHHHHHh
Confidence 345555555532 2 444444455444
No 62
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.0025 Score=77.44 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=111.7
Q ss_pred chhhhhHHHHHhh----cCCCccchhHHHHHHHHhCCCc-----chhHhhhhHHHhhcCCCCHHHHhHHHHHhcc--CCC
Q 002900 67 EATEVFFAVTKLF----QSRDIGLRRMVYLMIKELSPSA-----DEVIIVTSSLMKDMTSKTDMYRANAIRVLCR--ITD 135 (869)
Q Consensus 67 e~s~lf~~v~kl~----~s~d~~lKrl~Yl~l~~~~~~~-----d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~--I~~ 135 (869)
-++.+-+-|++.+ -.+|+++.+-.||++..++..+ .-+-+.++.+. .+|+|.+||++.-++|. ++-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftime---ksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIME---KSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cCCCceeeecchheccchhhhc
Confidence 3445556666666 4567999999999998776642 11223333332 38999999999999998 567
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH
Q 002900 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (869)
Q Consensus 136 ~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~ 215 (869)
|.+++...+++..-+.|.++.|||+|++.+.||...+-=-++.-+.++.-++.|.++.+.--|=..+.|+.... .++..
T Consensus 993 pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iyn 1071 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYN 1071 (1251)
T ss_pred ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhh
Confidence 88999999999999999999999999999999985543344577888888899988877666666677777543 45666
Q ss_pred HHHhh
Q 002900 216 LVTSL 220 (869)
Q Consensus 216 li~~l 220 (869)
+++++
T Consensus 1072 lLPdi 1076 (1251)
T KOG0414|consen 1072 LLPDI 1076 (1251)
T ss_pred hchHH
Confidence 66654
No 63
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.35 Score=56.11 Aligned_cols=261 Identities=13% Similarity=0.110 Sum_probs=154.3
Q ss_pred chhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc--------------
Q 002900 252 DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------- 317 (869)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-------------- 317 (869)
++...+.+..+....+..|.-.|+..++.|.+ ..++-..+.+.....++..+.-+|-+|++.+.-
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 34455555556666677788888888877754 233333444555566666666677777665432
Q ss_pred -------------ccCCCCCHHHHHHHHHHhhccC--ChhhHHHHHH-HHHH----------------------------
Q 002900 318 -------------SLISDQNRSIATLAITTLLKTG--NESSVDRLMK-QITN---------------------------- 353 (869)
Q Consensus 318 -------------~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~Il~-eL~~---------------------------- 353 (869)
..++|-..+||-.|-.+|-.+. +++=+.+.+. ++..
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 2345555556666655553332 2222222221 2222
Q ss_pred -----------------------hhhhccH---HHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 002900 354 -----------------------FMSDIAD---EFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDS 407 (869)
Q Consensus 354 -----------------------y~~~~~~---~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~ 407 (869)
|+....+ +.|+.+|.+++.||..-|.-+...++||.+++.++-. ++.-.+++.
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~-~VRL~ai~a 433 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIE-VVRLKAIFA 433 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHH-HHHHHHHHH
Confidence 1112234 4599999999999999999999999999999998654 466667777
Q ss_pred HHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC-hHHHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q 002900 408 IVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD-PSKYIRYIYNRVHLENATVRAAAVSTLAKFG 486 (869)
Q Consensus 408 i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~-~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~ 486 (869)
+..|... -.+++.-+...++.|+| ...+++..+--+|+----...+ ..-++..+...+.. -|.=|-.++.++.+|+
T Consensus 434 L~~Is~~-l~i~eeql~~il~~L~D-~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iG 510 (823)
T KOG2259|consen 434 LTMISVH-LAIREEQLRQILESLED-RSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK-YPQDRDEILRCMGRIG 510 (823)
T ss_pred HHHHHHH-heecHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh-CCCCcHHHHHHHHHHh
Confidence 7776654 67888889999999988 4566776666666543221111 11223333332211 2223445588888888
Q ss_pred ccccC-chHHHHHHHHHhhc--CCCHHHHHHHHH
Q 002900 487 AMVDA-LKPRVFVLLRRCLY--DGDDEVRDRATL 517 (869)
Q Consensus 487 ~~~~~-l~~~i~~ll~~~~~--d~d~evrdRA~~ 517 (869)
..++- +...+..++..... -..+++-|+++.
T Consensus 511 qnH~~lv~s~m~rfl~kh~~f~t~e~s~ed~~y~ 544 (823)
T KOG2259|consen 511 QNHRRLVLSNMGRFLEKHTSFATIEPSLEDGFYI 544 (823)
T ss_pred ccChhhHHHHHHHHHHhcccccccCccccChhhh
Confidence 87763 34445555544332 234666666554
No 64
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.65 E-value=0.0085 Score=55.15 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=74.9
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCCh--h----hHH-HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH--
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDG--T----LLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-- 177 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~--~----~~~-~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-- 177 (869)
+++.+.+=|.++|+.+|-.|+.+|+++... + +.+ .+.+.+.+.+.|+++.||+.|+.++..+....|+...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 345556666777889999999999888753 2 233 4567788888999999999999999999876654322
Q ss_pred ---HHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 002900 178 ---RWSNEVQEAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 178 ---~~~~~l~~~l~d~~~~v~~~al~ll~~i~ 206 (869)
..++.+.+.+.+.+..+..+|+.+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 35677778888878888888888876654
No 65
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.64 E-value=1.5 Score=53.47 Aligned_cols=383 Identities=15% Similarity=0.159 Sum_probs=199.0
Q ss_pred CCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc-C
Q 002900 133 ITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV--KRWSNEVQEAVQSRAALVQFHALALLHQIRQN-D 209 (869)
Q Consensus 133 I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v--~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~-d 209 (869)
..+..+-..+-+...+...|..|.||++++--+..+.+.-+... ....+...++.+|...+|...|+..+..+-.- +
T Consensus 229 ~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 229 LPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred CChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 33344556677778888899999999999988887665444322 25667778888888889999888776655421 1
Q ss_pred hh-HHHH-----HHHhhccCCCCChhHHHHHHH-HHHHhhhhhcCCCC-CchhhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 210 RL-AVSK-----LVTSLTRGTVRSPLAQCLLIR-YTTQVIREAATTQT-GDRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 210 ~~-~~~~-----li~~l~~~~~~~~~~~v~llr-~l~~~~~~~~~dp~-~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
.. ...+ ++.....+ .|-+-..+- ....+. . ...|+ ....+.......++..-..+-++++.-...+
T Consensus 309 ~~~d~~~~~~~~l~~~~~d~----~~~v~~~~~~~~~~L~-~-~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l 382 (759)
T KOG0211|consen 309 DDDDVVKSLTESLVQAVEDG----SWRVSYMVADKFSELS-S-AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKL 382 (759)
T ss_pred CchhhhhhhhHHHHHHhcCh----hHHHHHHHhhhhhhHH-H-HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHH
Confidence 11 2221 22221111 222221111 110000 0 01231 1223344555555554444555555444322
Q ss_pred c---C---CChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-------------------ccCCCCCHHHHHHHHHHhh
Q 002900 282 N---G---VTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------------SLISDQNRSIATLAITTLL 336 (869)
Q Consensus 282 ~---~---~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-------------------~~L~d~d~sI~~~aL~lL~ 336 (869)
. + .+.-..+.+...++.++.++...+|-+......- ..++|.++.++.--++.+.
T Consensus 383 ~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 383 ACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred hhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHH
Confidence 1 1 1111223345666777776666665433222111 3446666666654443221
Q ss_pred cc--C-ChhhHH----HHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhh---cCCcchHHHHHH
Q 002900 337 KT--G-NESSVD----RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE---EGGFEYKKAIVD 406 (869)
Q Consensus 337 ~l--~-~e~nv~----~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~---~g~~~~~~~iv~ 406 (869)
.. + ....+. ..+..+.....+..-..|.+++..|-.+|.... ...+.+.+..++.. ..-|.+.+.+..
T Consensus 463 ~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 463 LLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred HHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11 1 112222 233333333333444577888888888887433 11222223333222 123456667777
Q ss_pred HHHHHHHhCC--chHHHHHHHHHHhhhc--cCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHH
Q 002900 407 SIVILIRDIP--DAKENGLLHLCEFIED--CEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTL 482 (869)
Q Consensus 407 ~i~~ii~~~p--~~~~~~l~~L~~~l~~--~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~ltal 482 (869)
.+..++..+. ..+...+.++.....+ ..+-......+..+.+-....-...+++-.+..-.....+.||.-+.-.+
T Consensus 541 ~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 541 NLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred HhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 7777766654 3344445555444433 22222222222222222111112234444555544556789999888877
Q ss_pred HHHhccc--cCchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 002900 483 AKFGAMV--DALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVG 523 (869)
Q Consensus 483 ~Kl~~~~--~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~ 523 (869)
-|+...- +.....|..++.....|.|.++|=||....+.+.
T Consensus 621 ~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 621 PKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 7775432 3556788999999999999999999988766553
No 66
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.015 Score=66.76 Aligned_cols=224 Identities=16% Similarity=0.144 Sum_probs=145.3
Q ss_pred HhhHHHHHHHHHcCCCchhHHHHHHHhcc----------------ccCCCCCHHHHHHHHHHhhccCChh----------
Q 002900 289 LTPAITVLQLFLSSSKPVLRFAAVRTLNK----------------SLISDQNRSIATLAITTLLKTGNES---------- 342 (869)
Q Consensus 289 ~~~a~~~L~~~L~s~~~n~ry~aL~~l~~----------------~~L~d~d~sI~~~aL~lL~~l~~e~---------- 342 (869)
...+...|..+..+.|+++|-.|+..|.. ..++|++..||.-|+.++...+|--
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 33455557777888888888877776322 6678888999999988887665432
Q ss_pred --hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHH-HHH-HHh----------------hcCCcchHH
Q 002900 343 --SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNF-LSN-ILR----------------EEGGFEYKK 402 (869)
Q Consensus 343 --nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~-ll~-ll~----------------~~g~~~~~~ 402 (869)
-++.....+-+-+.+.+-..|.++.+++|..-. ..+.++.. |-+ +++ .+|++.-
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~----vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs-- 349 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ----VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS-- 349 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH----hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc--
Confidence 223344455555667777788888888888754 23333222 211 121 1221100
Q ss_pred HHHHHHHHHHHhCCch----------HHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCC-CCChHHHHHHHHhhccCCC
Q 002900 403 AIVDSIVILIRDIPDA----------KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPK-TSDPSKYIRYIYNRVHLEN 471 (869)
Q Consensus 403 ~iv~~i~~ii~~~p~~----------~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~-~~~~~~~l~~i~~~~~~e~ 471 (869)
=+..-...|.- -..++..++.-+|| ++-+++.++..-++.-+.. ...+.+.+.++...|+.|-
T Consensus 350 -----Gk~~~advpsee~d~~~~siI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 -----GKEWNADVPSEEDDEEEESIIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEI 423 (823)
T ss_pred -----CccccccCchhhccccccccccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHH
Confidence 00000001111 11233444555666 5667777766666665443 3458889999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 002900 472 ATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSD 525 (869)
Q Consensus 472 ~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~ 525 (869)
..||..++.++.+++.+ -.++......+-.++.|.+.+||+-..+.+...+..
T Consensus 424 ~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~ 476 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH-LAIREEQLRQILESLEDRSVDVREALRELLKNARVS 476 (823)
T ss_pred HHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99999999999999886 456677778888889999999999988887766543
No 67
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.30 E-value=1.9 Score=52.23 Aligned_cols=319 Identities=16% Similarity=0.180 Sum_probs=157.9
Q ss_pred ChhHHHHHHHHHHHHhhcChh--------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCC-----chhhHH
Q 002900 191 AALVQFHALALLHQIRQNDRL--------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTG-----DRPFYD 257 (869)
Q Consensus 191 ~~~v~~~al~ll~~i~~~d~~--------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~-----~~~l~~ 257 (869)
...+++.|+.+|..+..+.+. .+..|+.-+..+ +.=..+..++++.++-- .+.. ...+++
T Consensus 262 QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi----~~ENK~~m~~~giV~ 334 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE---NEELLILAVTFLKKLSI----FKENKDEMAESGIVE 334 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcC----CHHHHHHHHHcCCHH
Confidence 456778888888888765321 123344444433 22233444444444211 1112 234677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChHhHh-----hHHHHHHHHHcCCCchhHHHHHHHhcc---------------
Q 002900 258 FLESCLRHKAEMVIFEAARAITELNGVTNRELT-----PAITVLQLFLSSSKPVLRFAAVRTLNK--------------- 317 (869)
Q Consensus 258 ~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-----~a~~~L~~~L~s~~~n~ry~aL~~l~~--------------- 317 (869)
.|..++.+.+.-++-.|.++++.++. ....+. .+++.|..+|.+ ++.+..++..|+.
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~Td 411 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTD 411 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcc
Confidence 88888988888899999999999963 333333 345567778864 4566666666544
Q ss_pred ------c-cCCCCCHHHHHHHHHHhhcc-CChhhHHHHHHH--HHHhhhhccHHHH-HHHHHHHHHHHhhCCccHHHHHH
Q 002900 318 ------S-LISDQNRSIATLAITTLLKT-GNESSVDRLMKQ--ITNFMSDIADEFK-IVVVEAIRSLCLKFPLKYRSLMN 386 (869)
Q Consensus 318 ------~-~L~d~d~sI~~~aL~lL~~l-~~e~nv~~Il~e--L~~y~~~~~~~~r-~~~v~aI~~la~k~~~~~~~~v~ 386 (869)
. ++..++..+....+-++..+ .++.|++.+.+. |...+.. ....+ ..+++-|+.++.--++...-+++
T Consensus 412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~r-a~~~~D~lLlKlIRNiS~h~~~~k~~f~~ 490 (708)
T PF05804_consen 412 CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKR-ALKTRDPLLLKLIRNISQHDGPLKELFVD 490 (708)
T ss_pred hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHH-HHhcccHHHHHHHHHHHhcCchHHHHHHH
Confidence 1 12333333444444455544 455666655541 2222221 11122 22344455555433244444555
Q ss_pred HHHHHHh---hcCCcchHHHHHHHHHHHHHhCCch-HH------HHHHHHHHhhhcc-CchhHHHHHHhhhcCCCCCCCC
Q 002900 387 FLSNILR---EEGGFEYKKAIVDSIVILIRDIPDA-KE------NGLLHLCEFIEDC-EFTYLSTQILHFLGTEGPKTSD 455 (869)
Q Consensus 387 ~ll~ll~---~~g~~~~~~~iv~~i~~ii~~~p~~-~~------~~l~~L~~~l~~~-~~~~~~~~~l~ilGE~~~~~~~ 455 (869)
++.++++ ...+.++.-+++-.+.++-. |+. .. ..+..|.+.+... ..+++...++-++|--+... .
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~-~ 567 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTI--PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP-E 567 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhccc--CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH-H
Confidence 5554433 22233333333322222221 322 11 2333344444322 23345444445555433221 1
Q ss_pred hH------HHHHHHHh--hccCCCHHHHHHHHHHHHHHhccccCchHH------HHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002900 456 PS------KYIRYIYN--RVHLENATVRAAAVSTLAKFGAMVDALKPR------VFVLLRRCLYDGDDEVRDRATLYLNT 521 (869)
Q Consensus 456 ~~------~~l~~i~~--~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~------i~~ll~~~~~d~d~evrdRA~~yl~l 521 (869)
+. .++..+.+ +-..|+.+.-.+++-++.++..+ ++.+.. +..-|-..+.|.+.+||.=|-..+-+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDI 646 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 11 11222222 12356677777778888887665 333322 22333345678888888877776666
Q ss_pred hCC
Q 002900 522 VGS 524 (869)
Q Consensus 522 l~~ 524 (869)
+..
T Consensus 647 i~e 649 (708)
T PF05804_consen 647 IAE 649 (708)
T ss_pred HHH
Confidence 543
No 68
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.71 Score=49.54 Aligned_cols=267 Identities=18% Similarity=0.178 Sum_probs=140.9
Q ss_pred hHHHHHhhcCCCccch-hHHHHHHHHhCCC--c--chhH--hhhhHHHhhc-CCCCHHH---HhHHHHHhccCCChhh--
Q 002900 72 FFAVTKLFQSRDIGLR-RMVYLMIKELSPS--A--DEVI--IVTSSLMKDM-TSKTDMY---RANAIRVLCRITDGTL-- 138 (869)
Q Consensus 72 f~~v~kl~~s~d~~lK-rl~Yl~l~~~~~~--~--d~~~--Lvinsl~kDl-~s~n~~v---r~lALr~L~~I~~~~~-- 138 (869)
++.+++-+-|+|.+.. +-+|=|=+-++.+ | +.++ =++-.+..-| .+.+++. -+.||..+++=.+...
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 4667776777776643 3344444444433 1 1111 1233333333 3334333 3555555554222111
Q ss_pred -HH-HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHH------HHHHHHhcCCCh--hHHHHHHHHHHHHhhc
Q 002900 139 -LT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS------NEVQEAVQSRAA--LVQFHALALLHQIRQN 208 (869)
Q Consensus 139 -~~-~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~------~~l~~~l~d~~~--~v~~~al~ll~~i~~~ 208 (869)
++ .-.|...++|.+.+..||--|+-|+..+.-+.+. .++.+ +.+..++.++.+ ..+.++.=.|..+|+.
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 11 1356677888999999999999999988765543 23221 122222221111 2222222222222211
Q ss_pred ChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHh
Q 002900 209 DRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRE 288 (869)
Q Consensus 209 d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~ 288 (869)
++ .+..|.. ...-+++|..++.+.++-|+..|+-+|.++++.+.+-
T Consensus 232 -------------kn-P~P~w~~--------------------isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~ 277 (526)
T COG5064 232 -------------KN-PPPDWSN--------------------ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEK 277 (526)
T ss_pred -------------CC-CCCchHH--------------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHH
Confidence 11 1222321 1233457777888888889999999998887765543
Q ss_pred HhhHH-----HHHHHHHcCCCchhHHHHHHHhcc----------------------ccCCCCCHHHHHHHHHHhhcc--C
Q 002900 289 LTPAI-----TVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAITTLLKT--G 339 (869)
Q Consensus 289 ~~~a~-----~~L~~~L~s~~~n~ry~aL~~l~~----------------------~~L~d~d~sI~~~aL~lL~~l--~ 339 (869)
...++ ..|..+|++++.+++--+||.+.. .+|+++-..||+.|-=++..+ |
T Consensus 278 i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG 357 (526)
T COG5064 278 IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG 357 (526)
T ss_pred HHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC
Confidence 33322 356677888888887778887654 344555556777766555544 4
Q ss_pred ChhhHHHHHH-----HHHHhhhhccHHHHHHHHHHHHHH
Q 002900 340 NESSVDRLMK-----QITNFMSDIADEFKIVVVEAIRSL 373 (869)
Q Consensus 340 ~e~nv~~Il~-----eL~~y~~~~~~~~r~~~v~aI~~l 373 (869)
|.+.+..+++ -|.+.++..+...|.++.=+|...
T Consensus 358 nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 358 NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555554333 344445555656666666665554
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.15 E-value=0.013 Score=51.07 Aligned_cols=83 Identities=23% Similarity=0.245 Sum_probs=62.0
Q ss_pred HHHhh-cCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcC-
Q 002900 75 VTKLF-QSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVD- 152 (869)
Q Consensus 75 v~kl~-~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d- 152 (869)
+++.+ .+++..+|+-..-++.++. .+ =+++.|.+=++|+|+.+|-.|+++|+.+++++..+.+.. .+.+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~--~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~----~l~~~ 74 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELG--DP---EAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIK----LLQDD 74 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCT--HH---HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHH----HHTC-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--CH---hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHH----HHcCC
Confidence 44556 7888999988877775432 11 346777777789999999999999999998776665554 4455
Q ss_pred CChHHHHHHHHHHh
Q 002900 153 KNPVVASAALVSGI 166 (869)
Q Consensus 153 ~~p~VRk~A~lal~ 166 (869)
.+..||..|+.++.
T Consensus 75 ~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 75 DDEVVREAAAEALG 88 (88)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcC
Confidence 57888999988763
No 70
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.09 E-value=0.14 Score=51.47 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch-HHHHHHHHHHhhhccCchh
Q 002900 359 ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA-KENGLLHLCEFIEDCEFTY 437 (869)
Q Consensus 359 ~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~-~~~~l~~L~~~l~~~~~~~ 437 (869)
+..+|..++.++|.||.+||.-.+.+++.+...|+++.. .++..++..+.+++.+..-. +...+..++..+.| +.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~-~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D-~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDP-LVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD-ENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC-CCHH
Confidence 356899999999999999999999999999999997655 47777888888888765433 33444666667766 4566
Q ss_pred HHHHHHhhhcCCCCC
Q 002900 438 LSTQILHFLGTEGPK 452 (869)
Q Consensus 438 ~~~~~l~ilGE~~~~ 452 (869)
++..+..++.|....
T Consensus 79 Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 79 IRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777777655
No 71
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.92 E-value=0.36 Score=51.25 Aligned_cols=90 Identities=22% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCCHHHHhHHHHHhccCCChhhHHHH------HHHHHHHhcCCChHHHHHHHHHHhhhccc--ChHHHHHHHHHHHHHhc
Q 002900 117 SKTDMYRANAIRVLCRITDGTLLTQI------ERYLKQAIVDKNPVVASAALVSGIHLLQT--TPEIVKRWSNEVQEAVQ 188 (869)
Q Consensus 117 s~n~~vr~lALr~L~~I~~~~~~~~l------~~~i~~~l~d~~p~VRk~A~lal~~L~~~--~pe~v~~~~~~l~~~l~ 188 (869)
+.+|.++..|+-+|++...-...+.+ .+.|.+.+.+++|-||.+|+-|+..+... +.+.++..++.+.+.+-
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 56899999999999998876655554 45588888999999999999999977643 34556666666655432
Q ss_pred C--CChhHHHHHHHHHHHHh
Q 002900 189 S--RAALVQFHALALLHQIR 206 (869)
Q Consensus 189 d--~~~~v~~~al~ll~~i~ 206 (869)
+ -|..++.+++.+|..+.
T Consensus 104 s~~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred cCCCCCHHHHHHHHHHHccC
Confidence 2 36678888888877664
No 72
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=3.6 Score=51.20 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=100.0
Q ss_pred hhhhHHHHHhhcC-----CCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC-----Chh
Q 002900 69 TEVFFAVTKLFQS-----RDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT-----DGT 137 (869)
Q Consensus 69 s~lf~~v~kl~~s-----~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~-----~~~ 137 (869)
..++-.+++-+.+ +|....+.+=.++.+++.. |..++=-.+.|..-+.+.+-..|+.-+-.++++. +++
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 4455666665544 3555677777788888765 5555555556666678888899988888888753 222
Q ss_pred ---h----HHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHhh
Q 002900 138 ---L----LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK---RWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (869)
Q Consensus 138 ---~----~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~---~~~~~l~~~l~d~~~~v~~~al~ll~~i~~ 207 (869)
+ -..+...+..-+.|-+||||.+++-...||++.+..-++ +++...-..+.|++..|..+|+.++.....
T Consensus 349 ~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 2 223666777888999999999999999999875544333 444555556678899999999999877765
Q ss_pred cCh
Q 002900 208 NDR 210 (869)
Q Consensus 208 ~d~ 210 (869)
+.|
T Consensus 429 ~~P 431 (1251)
T KOG0414|consen 429 RHP 431 (1251)
T ss_pred cCC
Confidence 544
No 73
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.74 E-value=1.9 Score=50.45 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=23.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHh
Q 002900 354 FMSDIADEFKIVVVEAIRSLCLKFP-LKYRSLMNFLSNILR 393 (869)
Q Consensus 354 y~~~~~~~~r~~~v~aI~~la~k~~-~~~~~~v~~ll~ll~ 393 (869)
-+.+++++.|.++++.++.+|.--. .+...++..+.++|.
T Consensus 276 ~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 276 KLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLK 316 (556)
T ss_dssp CTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHH
T ss_pred ChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence 3456788999999999999986321 235566666666664
No 74
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=3.7 Score=47.81 Aligned_cols=257 Identities=18% Similarity=0.156 Sum_probs=148.5
Q ss_pred cCCCCHHHHhHHHHHhccCCChhhHHH-----HHHHHHHHhcCCChHHHHH-HHHHHhh----hcc-cChHHHHHHHHHH
Q 002900 115 MTSKTDMYRANAIRVLCRITDGTLLTQ-----IERYLKQAIVDKNPVVASA-ALVSGIH----LLQ-TTPEIVKRWSNEV 183 (869)
Q Consensus 115 l~s~n~~vr~lALr~L~~I~~~~~~~~-----l~~~i~~~l~d~~p~VRk~-A~lal~~----L~~-~~pe~v~~~~~~l 183 (869)
++...--.|.-|-..++.+-...+++. ++..+.+.+.|+.++-|+- |.+|.-. |.+ ..|-++ .+++.+
T Consensus 143 l~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv-~~lp~i 221 (569)
T KOG1242|consen 143 LTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV-PILPSI 221 (569)
T ss_pred hccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH-hhHHHH
Confidence 344444445444444444333333332 5666777889988777774 5555442 222 234444 577777
Q ss_pred HHHhcCCChhHHHHHHHHHHHHhh-cChhHHHHHHH----hhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCc----hh
Q 002900 184 QEAVQSRAALVQFHALALLHQIRQ-NDRLAVSKLVT----SLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD----RP 254 (869)
Q Consensus 184 ~~~l~d~~~~v~~~al~ll~~i~~-~d~~~~~~li~----~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~----~~ 254 (869)
.+...|..+-|.-+|....-.+.. -++-++..+++ .+.....++..+.+.+++.+... .|... ..
T Consensus 222 l~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~------ap~qLs~~lp~ 295 (569)
T KOG1242|consen 222 LTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC------APKQLSLCLPD 295 (569)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh------chHHHHHHHhH
Confidence 777778777776666655443332 22334544444 33211246677778888876642 23322 35
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHhccCC-ChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc----------------
Q 002900 255 FYDFLESCLRHKAEMVIFEAARAITELNGV-TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------- 317 (869)
Q Consensus 255 l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------- 317 (869)
+++.+...|.++-+.|.=.+..++..+... ...++...++.|..-+..+...+ -..++.+.+
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLalmv 374 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLALMV 374 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHHHH
Confidence 667777788888888888888887766421 12345566666555555444111 122333333
Q ss_pred ----ccCCCCCHHHHHHHHHHhhcc---C-ChhhHHHHHH----HHHHhhhhccHHHHHHHHHHHHHHHhhCCc
Q 002900 318 ----SLISDQNRSIATLAITTLLKT---G-NESSVDRLMK----QITNFMSDIADEFKIVVVEAIRSLCLKFPL 379 (869)
Q Consensus 318 ----~~L~d~d~sI~~~aL~lL~~l---~-~e~nv~~Il~----eL~~y~~~~~~~~r~~~v~aI~~la~k~~~ 379 (869)
+-+++.+.+++|.+..+.=.| . ++..+...+. .|..-+.+..++.|..+.++++.+-++-..
T Consensus 375 piL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 375 PILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 445667777888877665444 4 5566665444 444445566789999999999888775433
No 75
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=7 Score=46.60 Aligned_cols=320 Identities=18% Similarity=0.214 Sum_probs=170.2
Q ss_pred HHHHHHHHhcCCCCCccchhh-hhHHHHHhhcCCCccchhHHHHHHHHhCCCcch------hHhhhhHHHhhcCCCCHHH
Q 002900 50 ITKLLYLLNQGETFTKIEATE-VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE------VIIVTSSLMKDMTSKTDMY 122 (869)
Q Consensus 50 l~kli~l~~~G~~~~~~e~s~-lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~------~~Lvinsl~kDl~s~n~~v 122 (869)
.+=-++.-..|+ ++.. +.+-+-..++++|-..|-.+=+|+.+..+.++. +.=+.+++.+-+.|++-.+
T Consensus 348 ~CL~l~A~~~~D-----~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~V 422 (859)
T KOG1241|consen 348 VCLMLFAQCVGD-----DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWV 422 (859)
T ss_pred HHHHHHHHHhcc-----cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhh
Confidence 444555666676 3322 222233488999999999999998888775432 3345677888999999888
Q ss_pred HhHHHHHhccCC--------ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHH---------HH-HHHH
Q 002900 123 RANAIRVLCRIT--------DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR---------WS-NEVQ 184 (869)
Q Consensus 123 r~lALr~L~~I~--------~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~---------~~-~~l~ 184 (869)
|--|--++++|. .....+.+...+.+.+.| .|.|..+++=+...|....++.... +. ..+.
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~ 501 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG 501 (859)
T ss_pred cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence 866666666543 333445555556555554 6788888887777665444433321 12 2222
Q ss_pred HHhc--CC----ChhHHHHHHHHHHHHhhcChhHHHHHHHh-----------------hccCCCCChhHHH--HHHHHHH
Q 002900 185 EAVQ--SR----AALVQFHALALLHQIRQNDRLAVSKLVTS-----------------LTRGTVRSPLAQC--LLIRYTT 239 (869)
Q Consensus 185 ~~l~--d~----~~~v~~~al~ll~~i~~~d~~~~~~li~~-----------------l~~~~~~~~~~~v--~llr~l~ 239 (869)
.++. |+ +.....+|+.+|.++-++-+..+...+.. ++.. ...++..+ .+...++
T Consensus 502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~-dr~q~~eLQs~Lc~~Lq 580 (859)
T KOG1241|consen 502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLA-DRAQLNELQSLLCNTLQ 580 (859)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHHHHHH
Confidence 2221 22 23455666777777766554443222211 1100 11111111 1111222
Q ss_pred Hhhhhh-cCCCCCchhhHHHHHHHHhcCChHHHHH-HHHHHH----hccCCChHhHhhHHHHHHHHHcCCCchhHHHHHH
Q 002900 240 QVIREA-ATTQTGDRPFYDFLESCLRHKAEMVIFE-AARAIT----ELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVR 313 (869)
Q Consensus 240 ~~~~~~-~~dp~~~~~l~~~l~~~L~~~~~aV~~e-a~~~i~----~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~ 313 (869)
...+.- +.-+...+.++..+.++++++.++++-| |.-++. .++..-.+.+....+.|.+=|+
T Consensus 581 ~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~------------ 648 (859)
T KOG1241|consen 581 SIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLS------------ 648 (859)
T ss_pred HHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh------------
Confidence 111110 1134456778888888887744443332 222222 2221112223333333333332
Q ss_pred HhccccCCCCCHHHHHHHHHHhhccCChh--h----HHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHhhCCccHHHHH
Q 002900 314 TLNKSLISDQNRSIATLAITTLLKTGNES--S----VDRLMKQITNFMS--DIADEFKIVVVEAIRSLCLKFPLKYRSLM 385 (869)
Q Consensus 314 ~l~~~~L~d~d~sI~~~aL~lL~~l~~e~--n----v~~Il~eL~~y~~--~~~~~~r~~~v~aI~~la~k~~~~~~~~v 385 (869)
+-.+..+..-|+.+.-.+++.= . .+.++..|..-++ ..+-+.|..++..-|.+|.........|+
T Consensus 649 -------n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl 721 (859)
T KOG1241|consen 649 -------NFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL 721 (859)
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH
Confidence 1122334444444443333221 1 2345555555444 34557888899999999988888888999
Q ss_pred HHHHHHHhhc
Q 002900 386 NFLSNILREE 395 (869)
Q Consensus 386 ~~ll~ll~~~ 395 (869)
+..+.++...
T Consensus 722 ~~vm~llq~a 731 (859)
T KOG1241|consen 722 EMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHH
Confidence 9988888753
No 76
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.58 E-value=0.28 Score=52.04 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=75.5
Q ss_pred cCCCCCHHHHHHHHHHhhccC-ChhhHHHH-------HHHHHHhhhhccHHHHHHHHHHHHHHHhhCC--ccHHHHHHHH
Q 002900 319 LISDQNRSIATLAITTLLKTG-NESSVDRL-------MKQITNFMSDIADEFKIVVVEAIRSLCLKFP--LKYRSLMNFL 388 (869)
Q Consensus 319 ~L~d~d~sI~~~aL~lL~~l~-~e~nv~~I-------l~eL~~y~~~~~~~~r~~~v~aI~~la~k~~--~~~~~~v~~l 388 (869)
+++++++.+|.+|+..|-.+. +.+|...| ++++.. ...+.+.....++.+..++.... .-...++..+
T Consensus 62 lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~l 139 (254)
T PF04826_consen 62 LLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVS--SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDL 139 (254)
T ss_pred HcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHH
Confidence 466677777777777777663 44444433 333222 13456677888888888876432 2223456667
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCchHH-----HHHHHHHHhhhccCchhHHHHHHhhhcCC
Q 002900 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTE 449 (869)
Q Consensus 389 l~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~-----~~l~~L~~~l~~~~~~~~~~~~l~ilGE~ 449 (869)
+.+|.. |+-..+..+...+..+- .+|+... .++..+...+......+....++|+++.-
T Consensus 140 l~LL~~-G~~~~k~~vLk~L~nLS-~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 140 LSLLSS-GSEKTKVQVLKVLVNLS-ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred HHHHHc-CChHHHHHHHHHHHHhc-cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 787774 55556666665555544 3565433 24455666666666677777777776543
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.42 E-value=0.042 Score=43.41 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHHHhHHHHHhccCCC------hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhh
Q 002900 120 DMYRANAIRVLCRITD------GTLLTQIERYLKQAIVDKNPVVASAALVSGIHL 168 (869)
Q Consensus 120 ~~vr~lALr~L~~I~~------~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L 168 (869)
|.+|..|+.+|+++.. ....+.+.+.+.+++.|.++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678888888887642 224556777788888888888888888887653
No 78
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.36 E-value=0.067 Score=55.91 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=83.0
Q ss_pred CCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcc-hhHhhhhHHHhhcCCCCHHHHhHHHHHhccC----C
Q 002900 60 GETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSAD-EVIIVTSSLMKDMTSKTDMYRANAIRVLCRI----T 134 (869)
Q Consensus 60 G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d-~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I----~ 134 (869)
|..|... +..+++.+.+.+.+++..++.-+.-++..+...-. ..-+....+..-++++|+.+|..++.++..+ .
T Consensus 85 ~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 85 GSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 4445432 56678888899999988999999998887776533 3344567777788999999999999887764 2
Q ss_pred -------ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHH
Q 002900 135 -------DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN 181 (869)
Q Consensus 135 -------~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~ 181 (869)
.....+.+.+.|.+++.|.+|-||+.|--++..++...|+-.+.++.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 11124779999999999999999999999999998877776655443
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=7.7 Score=45.30 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHhhc-ChhHHHHHHHhhccCCCCChh-HHHHHHHHHHH--hhhhhcCCCCCch
Q 002900 178 RWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLAVSKLVTSLTRGTVRSPL-AQCLLIRYTTQ--VIREAATTQTGDR 253 (869)
Q Consensus 178 ~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~-d~~~~~~li~~l~~~~~~~~~-~~v~llr~l~~--~~~~~~~dp~~~~ 253 (869)
++++.+.+.+.|..+.|.-++...+..++.- +-..+.++++.+... ...|- -....+..+.. |.. ..++....
T Consensus 295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~-l~dp~~~~~e~~~~L~~ttFV~--~V~~psLa 371 (569)
T KOG1242|consen 295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA-LADPSCYTPECLDSLGATTFVA--EVDAPSLA 371 (569)
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-hcCcccchHHHHHhhcceeeee--eecchhHH
Confidence 5667777778888888888877776555421 112355555544311 11111 11122222211 100 13454556
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhccC-C-ChHhHh----hHHHHHHHHHcCCCchhHHHHHHHhcc
Q 002900 254 PFYDFLESCLRHKAEMVIFEAARAITELNG-V-TNRELT----PAITVLQLFLSSSKPVLRFAAVRTLNK 317 (869)
Q Consensus 254 ~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~-~-~~~~~~----~a~~~L~~~L~s~~~n~ry~aL~~l~~ 317 (869)
.+..+|.+-+..++...--.++..+-.+.. . .+..+. ...+-|..-+....|++|+.+.+++..
T Consensus 372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence 677777777766666666666666643310 1 123222 233334444555688999998888743
No 80
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.20 E-value=0.16 Score=45.47 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH----HHHHHHHHHhcCCChhHHHHHHHH
Q 002900 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK----RWSNEVQEAVQSRAALVQFHALAL 201 (869)
Q Consensus 135 ~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~----~~~~~l~~~l~d~~~~v~~~al~l 201 (869)
.....+.++++|.+++.|.++.||-.|+-|++.+.+...+.+- +.++.+..++.|.|+.|..+|-.+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 4557788999999999999999999999999999876655442 566667777889999999888433
No 81
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.05 E-value=0.027 Score=38.90 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcc
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~ 170 (869)
+.+.+.+++.|++|.||.+|+.|+..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999988764
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.84 E-value=0.088 Score=41.53 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhhhcccChHHHH----HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002900 155 PVVASAALVSGIHLLQTTPEIVK----RWSNEVQEAVQSRAALVQFHALALLHQ 204 (869)
Q Consensus 155 p~VRk~A~lal~~L~~~~pe~v~----~~~~~l~~~l~d~~~~v~~~al~ll~~ 204 (869)
|.||..|+.++..+....++.++ +.++.+..+|.|+++.|..+|...|..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 68999999999998877777665 677788888889899999999877654
No 83
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.81 E-value=2 Score=50.33 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHH
Q 002900 153 KNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV 213 (869)
Q Consensus 153 ~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~ 213 (869)
.++-+++-|+-=+.|.++..|++-.+.++.+.|+..|.|..|...|+.-|-.+|++++.-+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 4566777777777777777777777777777777777777777777666666665544333
No 84
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.58 E-value=12 Score=43.63 Aligned_cols=320 Identities=13% Similarity=0.103 Sum_probs=158.5
Q ss_pred ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcc---cCh--HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcC
Q 002900 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ---TTP--EIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQND 209 (869)
Q Consensus 135 ~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~---~~p--e~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d 209 (869)
..-....+...+.+.|.++.|.||-.|+--+..|.+ ... +.+..+-..+.+-+....|-|+...+.+++.|-..-
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 334455566666667777777777777654443322 111 222344444555555555655555554444332210
Q ss_pred hhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChH--
Q 002900 210 RLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR-- 287 (869)
Q Consensus 210 ~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~-- 287 (869)
. + |. ..|. ...+++.+.++|+++..-|+-..+.++..+...++.
T Consensus 678 --~-------~---------------~~---------mqpP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi 723 (975)
T COG5181 678 --R-------F---------------RS---------MQPP-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI 723 (975)
T ss_pred --c-------c---------------cc---------cCCc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC
Confidence 0 0 00 0111 234455678888888777777777766554322221
Q ss_pred ----hHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHH
Q 002900 288 ----ELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFK 363 (869)
Q Consensus 288 ----~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r 363 (869)
.+.-+...+ .+|..-|++|||-|-+++--+...--=+.++.-|.+-+...+-+.|
T Consensus 724 ~~rEWMRIcfeLv---------------------d~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~R 782 (975)
T COG5181 724 GVREWMRICFELV---------------------DSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQR 782 (975)
T ss_pred CHHHHHHHHHHHH---------------------HHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhh
Confidence 111122222 2244556778888777654332222223455555555554555677
Q ss_pred HHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH----HHHHHHHhhhcc--Cchh
Q 002900 364 IVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN----GLLHLCEFIEDC--EFTY 437 (869)
Q Consensus 364 ~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~----~l~~L~~~l~~~--~~~~ 437 (869)
.-...+|+..|+--.+ -.++..|+.=-+.. .-.+++-+...+..+++...+.-.. +...|-+.+-|- -+-+
T Consensus 783 vctsvaI~iVae~cgp--fsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRq 859 (975)
T COG5181 783 VCTSVAISIVAEYCGP--FSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQ 859 (975)
T ss_pred hhhhhhhhhhHhhcCc--hhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHH
Confidence 7777777777763222 12333333211111 1235566666666665543332222 122223333321 1212
Q ss_pred HHHHHH-hh-hcCCCCCCCC---hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHH
Q 002900 438 LSTQIL-HF-LGTEGPKTSD---PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVR 512 (869)
Q Consensus 438 ~~~~~l-~i-lGE~~~~~~~---~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evr 512 (869)
....++ ++ || ++.+.+ .-.+++.+..++..++|.|.......+--|+..-. . ..+..-+...+.+...-||
T Consensus 860 ta~nvI~Hl~Ln--c~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg-~-g~~m~Yv~qGLFHPs~~VR 935 (975)
T COG5181 860 TAMNVIRHLVLN--CPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLG-S-GAMMKYVQQGLFHPSSTVR 935 (975)
T ss_pred HHHHHHHHHhcC--CCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc-c-HHHHHHHHHhccCchHHHH
Confidence 222222 22 23 222222 23456677777888899998877766655544221 1 1234555667788888898
Q ss_pred HHHH
Q 002900 513 DRAT 516 (869)
Q Consensus 513 dRA~ 516 (869)
.|=+
T Consensus 936 k~yw 939 (975)
T COG5181 936 KRYW 939 (975)
T ss_pred HHHH
Confidence 8743
No 85
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.54 E-value=12 Score=45.67 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCC-CChHHHHHHHHhhccCCCHHHHHHHHHHH
Q 002900 404 IVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT-SDPSKYIRYIYNRVHLENATVRAAAVSTL 482 (869)
Q Consensus 404 iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~-~~~~~~l~~i~~~~~~e~~~vr~~~ltal 482 (869)
.|-.+..++-.+..+-...+..|..-++.++...++-.++-.+|.++... .-...|+-.|..++...++.||-+.+..+
T Consensus 951 ~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL 1030 (1529)
T KOG0413|consen 951 GVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILL 1030 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHH
Confidence 34456666666777777778888888888877777766666666664322 22345666777788888999999999888
Q ss_pred HHHhcccc-CchHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002900 483 AKFGAMVD-ALKPRVFVLLRRCLYDGDDEVRDRATLYLNT 521 (869)
Q Consensus 483 ~Kl~~~~~-~l~~~i~~ll~~~~~d~d~evrdRA~~yl~l 521 (869)
+++..+-= .-+..+.-=|-..+-|.+++||.-|-||+.-
T Consensus 1031 ~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1031 ARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISE 1070 (1529)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 88755310 1122222222234568889999999998654
No 86
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=4.8 Score=43.88 Aligned_cols=387 Identities=18% Similarity=0.161 Sum_probs=204.5
Q ss_pred CcccCCCccchhhhHHHHHhhhcCCC-CCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHH
Q 002900 15 EAEYSPFLGIEKGAVLQEARVFNDPQ-LDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLM 93 (869)
Q Consensus 15 ~~~~~~~~~~~k~~~~qe~r~f~~~~-~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~ 93 (869)
|++..||.+.+..++-.++..|.+.+ ++ |+... .+.. .+-+--|.+..+.|-.|++
T Consensus 14 Es~~~~~ad~erEav~~ll~~lEd~~~i~--------------------fyS~~--plra-ltvL~ySDnlnlqrsaala 70 (550)
T KOG4224|consen 14 ESESRGFADPEREAVADLLNRLEDRNAIS--------------------FYSAS--PLRA-LTVLKYSDNLNLQRSAALA 70 (550)
T ss_pred cccccccCChhHHHHHHHHHhhccccccc--------------------ccCCC--ccch-heeeeeccccccchHHHHH
Confidence 44457899999888777776665422 11 11111 0100 1112247778888889998
Q ss_pred HHHhCCC--cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCCh----hhHH---HHHHHHHHHhcCCChHHHHHHHHH
Q 002900 94 IKELSPS--ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDG----TLLT---QIERYLKQAIVDKNPVVASAALVS 164 (869)
Q Consensus 94 l~~~~~~--~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~----~~~~---~l~~~i~~~l~d~~p~VRk~A~la 164 (869)
..+..+. .....=+.-+++--++|+++.+++.|--+++++... .++- -+.+.|.+.+.|.. -||..|+-|
T Consensus 71 fAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgC 149 (550)
T KOG4224|consen 71 FAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGC 149 (550)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhh
Confidence 8665542 233334455666678999999999999999975432 2221 24456777777655 589999999
Q ss_pred HhhhcccChHHHH----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHH
Q 002900 165 GIHLLQTTPEIVK----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQ 240 (869)
Q Consensus 165 l~~L~~~~pe~v~----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~ 240 (869)
+-.|...+..-++ .-+.-+..+-+.+|..|+.+|.+.|..+-.. +..-+.|+ .
T Consensus 150 itnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV---------------------~- 206 (550)
T KOG4224|consen 150 ITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLV---------------------H- 206 (550)
T ss_pred hhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhh---------------------c-
Confidence 9887754332222 1223333444566778888887776544321 00000000 0
Q ss_pred hhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCC--hHhHh----hHHHHHHHHHcCCCchhHHHHHHH
Q 002900 241 VIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVT--NRELT----PAITVLQLFLSSSKPVLRFAAVRT 314 (869)
Q Consensus 241 ~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~--~~~~~----~a~~~L~~~L~s~~~n~ry~aL~~ 314 (869)
. --++++...+++.+..|.|-|..+|..+.-.. .+.+. ..+..|..+..++++-+|.
T Consensus 207 ---a---------G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkc----- 269 (550)
T KOG4224|consen 207 ---A---------GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKC----- 269 (550)
T ss_pred ---c---------CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHH-----
Confidence 0 01346777788888899999988887663100 01111 1233343444444444443
Q ss_pred hccccCCCCCHHHHHHHHHHhhccCChhh----------HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHH
Q 002900 315 LNKSLISDQNRSIATLAITTLLKTGNESS----------VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSL 384 (869)
Q Consensus 315 l~~~~L~d~d~sI~~~aL~lL~~l~~e~n----------v~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~ 384 (869)
.|=..|-.++..+. +..+++-|.. .-...-.+.|-.|..++. +|-....+
T Consensus 270 ---------------qA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs----~~~plilasVaCIrnisi-hplNe~lI 329 (550)
T KOG4224|consen 270 ---------------QAGLALRNLASDTEYQREIVEAGSLPLLVELLQS----PMGPLILASVACIRNISI-HPLNEVLI 329 (550)
T ss_pred ---------------HHHHHHhhhcccchhhhHHHhcCCchHHHHHHhC----cchhHHHHHHHHHhhccc-ccCcccce
Confidence 33222222222221 2222332211 111233344455555554 34444444
Q ss_pred HHH-----HHHHHhhcCCcchHHHHHHHHHHHHHhC----CchHH-HHHHHHHHhhhccC--chhHHHHHHhhhcCCCCC
Q 002900 385 MNF-----LSNILREEGGFEYKKAIVDSIVILIRDI----PDAKE-NGLLHLCEFIEDCE--FTYLSTQILHFLGTEGPK 452 (869)
Q Consensus 385 v~~-----ll~ll~~~g~~~~~~~iv~~i~~ii~~~----p~~~~-~~l~~L~~~l~~~~--~~~~~~~~l~ilGE~~~~ 452 (869)
++. |.++|+...+-+.+=.+++.++++...+ ..+++ .++.+|.+.+.|-. ..+-..+++-.+.- .+.
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~ 408 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDN 408 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccc
Confidence 444 8888886555557767788888876532 23333 37778888876632 22222223333221 111
Q ss_pred CCChHHH-----HHHHHhhccCCCHHHHHHHHHHHHHHhcc
Q 002900 453 TSDPSKY-----IRYIYNRVHLENATVRAAAVSTLAKFGAM 488 (869)
Q Consensus 453 ~~~~~~~-----l~~i~~~~~~e~~~vr~~~ltal~Kl~~~ 488 (869)
+-..+ +..+......++.+||.-+-.|++.+...
T Consensus 409 --~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 409 --DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred --cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 11111 22333444467889998888888877654
No 87
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.45 E-value=0.18 Score=46.11 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcC
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQND 209 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d 209 (869)
+.+.+.+.+.+.++.+|+.|+.++..+....|+... ..++.+.++++++++.++.+|+.+|..+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 566777788999999999999999999877666544 46678888899999999999999999988653
No 88
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.34 E-value=0.1 Score=46.20 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=55.8
Q ss_pred hHHHhhcCCCCHHHHhHHHHHhccCCC-----hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChH-HHHHHHH
Q 002900 109 SSLMKDMTSKTDMYRANAIRVLCRITD-----GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-IVKRWSN 181 (869)
Q Consensus 109 nsl~kDl~s~n~~vr~lALr~L~~I~~-----~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe-~v~~~~~ 181 (869)
+...++++||.+.+||-||+.|.++.. ..-.+.+...+.+.+.|..+||-=+|+-|+.-|...+|+ +++.+++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 456778899999999999999987432 223566777788888999999999999888888888887 4444433
No 89
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.32 E-value=0.37 Score=56.01 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=94.5
Q ss_pred CCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC-----CChhhHH-------HHHHHHHH
Q 002900 82 RDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI-----TDGTLLT-------QIERYLKQ 148 (869)
Q Consensus 82 ~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I-----~~~~~~~-------~l~~~i~~ 148 (869)
+|.+--|=+-+|+..+++. |..++=--+.+-+-|.+..-..||.-+...+++ .+++|.+ .++..+..
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 3344434444555455543 455555578888899999999999999999985 4565655 57777788
Q ss_pred HhcCCChHHHHHHHHHHhhhcccChHHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh
Q 002900 149 AIVDKNPVVASAALVSGIHLLQTTPEIVK---RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 149 ~l~d~~p~VRk~A~lal~~L~~~~pe~v~---~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~ 210 (869)
-+.|.+||+|-||+..+.+++..+.-.++ +++...-..+.|+...|..+|+.++..+....|
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999875543332 566666777888999999999998876654333
No 90
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.32 E-value=0.9 Score=56.25 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=120.0
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCC----------hhhHHHHHHHHHHHhcC-CChHHHHHHHHHHhhhcccChHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITD----------GTLLTQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEI 175 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~----------~~~~~~l~~~i~~~l~d-~~p~VRk~A~lal~~L~~~~pe~ 175 (869)
+.--+.--+.|+...+||.||.+|+.+-. .-+.++|.|.+..++.| ...+||-+=|-|+..|.. .
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~----t 538 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK----T 538 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHH----H
Confidence 45556666789999999999999987421 22578899999999999 778999888888887763 2
Q ss_pred HHHHHHHHHH-----HhcCCChh----HHHHH-HHHHHHHhhcChhHHHHHHHhhccCCCCChhHH---HHHHHHHHHhh
Q 002900 176 VKRWSNEVQE-----AVQSRAAL----VQFHA-LALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQ---CLLIRYTTQVI 242 (869)
Q Consensus 176 v~~~~~~l~~-----~l~d~~~~----v~~~a-l~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~---v~llr~l~~~~ 242 (869)
..+|+..-+. ++++.+.. -.+++ +..|++ .+..++..+..+ ..|... ++-|--+|.|+
T Consensus 539 A~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-------~V~~~v~sLlsd--~~~~Vkr~Lle~i~~LC~FF 609 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-------TVEQMVSSLLSD--SPPIVKRALLESIIPLCVFF 609 (1431)
T ss_pred HHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-------HHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHh
Confidence 3344443333 23433321 00000 000111 111122222211 112111 11122334443
Q ss_pred hhhcCCCCCchhhHHHHHHHHhcCCh---HHHHHHHHHHHhc-cCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-
Q 002900 243 REAATTQTGDRPFYDFLESCLRHKAE---MVIFEAARAITEL-NGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK- 317 (869)
Q Consensus 243 ~~~~~dp~~~~~l~~~l~~~L~~~~~---aV~~ea~~~i~~l-~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~- 317 (869)
.. .+..+-++..|-.+|+.++. ++.|+.+--+.-+ ...+.+ .-.+.+|+.-|+.++.-+--.||..+.-
T Consensus 610 Gk----~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s--eyllPLl~Q~ltD~EE~Viv~aL~~ls~L 683 (1431)
T KOG1240|consen 610 GK----EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS--EYLLPLLQQGLTDGEEAVIVSALGSLSIL 683 (1431)
T ss_pred hh----cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH--HHHHHHHHHhccCcchhhHHHHHHHHHHH
Confidence 32 33344566667777776654 3555555433211 100001 1233444444555554443333333321
Q ss_pred -------------------ccCCCCCHHHHHHHHHHhhccCC-hhhHH---HHHHHHHHhhh
Q 002900 318 -------------------SLISDQNRSIATLAITTLLKTGN-ESSVD---RLMKQITNFMS 356 (869)
Q Consensus 318 -------------------~~L~d~d~sI~~~aL~lL~~l~~-e~nv~---~Il~eL~~y~~ 356 (869)
.+|-.||--||+-++.+++.+.. =++++ .|+.-|..|+.
T Consensus 684 ik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 684 IKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 56677888888888888877632 23444 34445555554
No 91
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.27 E-value=0.14 Score=59.22 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=96.8
Q ss_pred hhHHHHHhhcC----CCccchhHHHHHHHHhCCC-----cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC--ChhhH
Q 002900 71 VFFAVTKLFQS----RDIGLRRMVYLMIKELSPS-----ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT--DGTLL 139 (869)
Q Consensus 71 lf~~v~kl~~s----~d~~lKrl~Yl~l~~~~~~-----~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~--~~~~~ 139 (869)
+-+.|.+..++ +|.++-+-.|+.+..+.-. .+-.-+.|-++. .+|+|.+|++|.-.||.+. -..++
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~me---k~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSME---KHPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hCCCcceeccceeeccccceehhhhh
Confidence 44445556665 7888999999987544321 122222222222 3899999999999999854 45678
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh
Q 002900 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 140 ~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~ 210 (869)
+....++.+.|.|.+..|||.+.+.+.-|.-...=-++.-+.++..+|.|.|...---|=..+.++...|.
T Consensus 970 de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 970 DEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 88889999999999999999999999887754443345666777778888877665555556677776653
No 92
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.88 E-value=9.9 Score=39.99 Aligned_cols=229 Identities=20% Similarity=0.216 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHH
Q 002900 47 SQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANA 126 (869)
Q Consensus 47 ~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lA 126 (869)
.+..+.++++-+.|.+ .+ .-.++|.+-..+--+|.=+-.++.+.... .++=+.-....| .+..|.+|--|
T Consensus 20 ~~r~rALf~Lr~l~~~-----~~--i~~i~ka~~d~s~llkhe~ay~LgQ~~~~--~Av~~l~~vl~d-esq~pmvRhEA 89 (289)
T KOG0567|consen 20 QNRFRALFNLRNLLGP-----AA--IKAITKAFIDDSALLKHELAYVLGQMQDE--DAVPVLVEVLLD-ESQEPMVRHEA 89 (289)
T ss_pred HHHHHHHHhhhccCCh-----HH--HHHHHHhcccchhhhccchhhhhhhhccc--hhhHHHHHHhcc-cccchHHHHHH
Confidence 5557888888888762 22 34466666666555655555555454322 222222223333 56789999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcc------------------cChHHHHHHHHHHHHHhc
Q 002900 127 IRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ------------------TTPEIVKRWSNEVQEAVQ 188 (869)
Q Consensus 127 Lr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~------------------~~pe~v~~~~~~l~~~l~ 188 (869)
-.+|+.++.++..+.+.++. .|+..-||-+..+|+.++-. .-|.-. +-+.++...+.
T Consensus 90 aealga~~~~~~~~~l~k~~----~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~-ssv~~lr~~ll 164 (289)
T KOG0567|consen 90 AEALGAIGDPESLEILTKYI----KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANL-SSVHELRAELL 164 (289)
T ss_pred HHHHHhhcchhhHHHHHHHh----cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCcccc-ccHHHHHHHHH
Confidence 99999999888888777665 88888999998888876531 111111 12233333333
Q ss_pred CCC-hhHHHHHHHHHHHHhhc-ChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhc-
Q 002900 189 SRA-ALVQFHALALLHQIRQN-DRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH- 265 (869)
Q Consensus 189 d~~-~~v~~~al~ll~~i~~~-d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~- 265 (869)
|.+ +..-.- .++ +-++.. .-.++.-++..+. ..|.+-+...--.+. + .-.|.. +..+...|..
T Consensus 165 d~t~~l~~Ry-~am-F~LRn~g~EeaI~al~~~l~---~~SalfrhEvAfVfG----Q-l~s~~a----i~~L~k~L~d~ 230 (289)
T KOG0567|consen 165 DETKPLFERY-RAM-FYLRNIGTEEAINALIDGLA---DDSALFRHEVAFVFG----Q-LQSPAA----IPSLIKVLLDE 230 (289)
T ss_pred hcchhHHHHH-hhh-hHhhccCcHHHHHHHHHhcc---cchHHHHHHHHHHHh----h-ccchhh----hHHHHHHHHhh
Confidence 322 222111 122 222322 2245666666554 223433332211111 1 113333 2333333332
Q ss_pred -CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHH
Q 002900 266 -KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFA 310 (869)
Q Consensus 266 -~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~ 310 (869)
-++||.-||+.++..+.+ . .++.+|+.++...++.+|-.
T Consensus 231 ~E~pMVRhEaAeALGaIa~--e----~~~~vL~e~~~D~~~vv~es 270 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD--E----DCVEVLKEYLGDEERVVRES 270 (289)
T ss_pred hcchHHHHHHHHHHHhhcC--H----HHHHHHHHHcCCcHHHHHHH
Confidence 467999999999999853 2 58889999988887777644
No 93
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.86 E-value=7.9 Score=41.55 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=53.9
Q ss_pred HHHhhcCCCCHHHHhHHHHHhccCCCh------hhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHH----HHHH
Q 002900 110 SLMKDMTSKTDMYRANAIRVLCRITDG------TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI----VKRW 179 (869)
Q Consensus 110 sl~kDl~s~n~~vr~lALr~L~~I~~~------~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~----v~~~ 179 (869)
.+.+-+.++||.+|..|++-+..+... .--...++.+.+++.+..| .+-|+.|+.++.. ++++ +..+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQDL 83 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 455667899999999999888887766 1124578888999999888 6778888888775 3322 2234
Q ss_pred HHHHHHHhcCC
Q 002900 180 SNEVQEAVQSR 190 (869)
Q Consensus 180 ~~~l~~~l~d~ 190 (869)
+..+.+.+-|.
T Consensus 84 ~k~l~~~~~~p 94 (353)
T KOG2973|consen 84 LKVLMDMLTDP 94 (353)
T ss_pred HHHHHHHhcCc
Confidence 44455544443
No 94
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=7.8 Score=49.67 Aligned_cols=288 Identities=20% Similarity=0.222 Sum_probs=153.9
Q ss_pred CCCCHHHHhHHHHHhcc--CCC-----hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChH-HHHHHHHHHHHHh
Q 002900 116 TSKTDMYRANAIRVLCR--ITD-----GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-IVKRWSNEVQEAV 187 (869)
Q Consensus 116 ~s~n~~vr~lALr~L~~--I~~-----~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe-~v~~~~~~l~~~l 187 (869)
=||++-+|.. ...+=+ |.+ .+....+.+.+..++.++...||-++++|+..|.+..|. .+.+-++++-.
T Consensus 1008 yDP~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~-- 1084 (1702)
T KOG0915|consen 1008 YDPDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWE-- 1084 (1702)
T ss_pred cCCcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH--
Confidence 4678777742 222222 222 345666888888889999999999999999999987652 22222222222
Q ss_pred cCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHh---
Q 002900 188 QSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLR--- 264 (869)
Q Consensus 188 ~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~--- 264 (869)
.++.+.-.|...-|.+-.+....++ =.++|. + + ..++....+.++.+.++|=
T Consensus 1085 ---------~~fRvmDDIKEsVR~aa~~~~~~ls----------Kl~vr~-~----d-~~~~~~~~~~l~~iLPfLl~~g 1139 (1702)
T KOG0915|consen 1085 ---------AAFRVMDDIKESVREAADKAARALS----------KLCVRI-C----D-VTNGAKGKEALDIILPFLLDEG 1139 (1702)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhh-c----c-cCCcccHHHHHHHHHHHHhccC
Confidence 3455555554433333333322221 001111 1 1 1245556677777777764
Q ss_pred --cCChHHHHHHHHHHHhccCCChHhHhhH----HHHHHHHHcCCCc-hhHHHHHHHhcc--ccCCCCCHHH-----HHH
Q 002900 265 --HKAEMVIFEAARAITELNGVTNRELTPA----ITVLQLFLSSSKP-VLRFAAVRTLNK--SLISDQNRSI-----ATL 330 (869)
Q Consensus 265 --~~~~aV~~ea~~~i~~l~~~~~~~~~~a----~~~L~~~L~s~~~-n~ry~aL~~l~~--~~L~d~d~sI-----~~~ 330 (869)
|.-+.|.--|+.+++.+.....+.+.+- +..|....+.-++ .+-|+++|..+. .-+++--.++ =..
T Consensus 1140 ims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmme 1219 (1702)
T KOG0915|consen 1140 IMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMME 1219 (1702)
T ss_pred cccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHH
Confidence 3456788888889988854444433322 2233333344333 578999887543 1121111111 145
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHH----hhcCCcchHHHHH
Q 002900 331 AITTLLKTGNESSVDRLMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNIL----REEGGFEYKKAIV 405 (869)
Q Consensus 331 aL~lL~~l~~e~nv~~Il~eL~~y~~-~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll----~~~g~~~~~~~iv 405 (869)
+++.++...+-+-.+.++.++.+-++ ...-.-|.-...-|..|+.|++....-+.+-|++.+ ++.. -.++....
T Consensus 1220 Ti~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN-esv~kafA 1298 (1702)
T KOG0915|consen 1220 TINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN-ESVRKAFA 1298 (1702)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc-HHHHHHHH
Confidence 55666666666666666666666554 223345666677777888888776665555555443 3322 22333444
Q ss_pred HHHHHHHHhC-Cch-HHHHHHHHHHhhhc
Q 002900 406 DSIVILIRDI-PDA-KENGLLHLCEFIED 432 (869)
Q Consensus 406 ~~i~~ii~~~-p~~-~~~~l~~L~~~l~~ 432 (869)
.++-.+++-. |+. +..+-..++.++++
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence 4444554432 322 33333344555544
No 95
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=16 Score=46.97 Aligned_cols=82 Identities=24% Similarity=0.311 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhhcc---cChHHHH---HHHHHHHHHhcCCCh---hHHHHHHHHHHHHhhcC-
Q 002900 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQ---TTPEIVK---RWSNEVQEAVQSRAA---LVQFHALALLHQIRQND- 209 (869)
Q Consensus 140 ~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~---~~pe~v~---~~~~~l~~~l~d~~~---~v~~~al~ll~~i~~~d- 209 (869)
..+...+...+.+++|.+|+++++=++.+.+ ..|+++- ++.....+.|.|+|. -|...++++.|+|...+
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 3455666777789999999999987775443 3565542 455566677778775 46667788889887543
Q ss_pred hhH-HHHHHHhhc
Q 002900 210 RLA-VSKLVTSLT 221 (869)
Q Consensus 210 ~~~-~~~li~~l~ 221 (869)
... +.-|+.++.
T Consensus 897 k~~LV~sL~~tl~ 909 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLT 909 (1702)
T ss_pred HHHHHHHHHHHHh
Confidence 222 445666554
No 96
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.03 E-value=1.2 Score=53.44 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=74.9
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~ 186 (869)
+.+.|.+..+..+...+-++|++|||++.+..+..+.+.+. .-...++++|..|+.|+-++....|+.++..+-.+..-
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 44455555566777889999999999999999999999985 23446789999999999999888899887654443321
Q ss_pred hcCCChhHHHHHHHHHHHHhhc
Q 002900 187 VQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 187 l~d~~~~v~~~al~ll~~i~~~ 208 (869)
.+.++-+..+|+.+|....+.
T Consensus 526 -~~e~~EvRiaA~~~lm~t~P~ 546 (574)
T smart00638 526 -RAEPPEVRMAAVLVLMETKPS 546 (574)
T ss_pred -CCCChHHHHHHHHHHHhcCCC
Confidence 234567888888777665543
No 97
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=20 Score=42.88 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=26.6
Q ss_pred HHHHHHHh-hhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 002900 347 LMKQITNF-MSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388 (869)
Q Consensus 347 Il~eL~~y-~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~l 388 (869)
.++.|++| +++.+++.|+.+|.+||-++.|-|+....++..|
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lL 597 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLL 597 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHH
Confidence 44455555 5667777777777777777776666555554443
No 98
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.64 E-value=7.1 Score=42.24 Aligned_cols=210 Identities=15% Similarity=0.130 Sum_probs=131.7
Q ss_pred HHhhcCCCCHHHHhHHHHHhccCCChh-hHHH------HHHHHHHHhcCCCh--HHHHHHHHHHhhhcc-cCh----HHH
Q 002900 111 LMKDMTSKTDMYRANAIRVLCRITDGT-LLTQ------IERYLKQAIVDKNP--VVASAALVSGIHLLQ-TTP----EIV 176 (869)
Q Consensus 111 l~kDl~s~n~~vr~lALr~L~~I~~~~-~~~~------l~~~i~~~l~d~~p--~VRk~A~lal~~L~~-~~p----e~v 176 (869)
+..-|.+++..+|-.|+-+|++|.+.+ .+.. ...++...+.++.+ ..-|.|--.+-.|.+ ++| ..+
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i 241 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI 241 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH
Confidence 445568899999999999999997644 4433 23455555665555 344667777777776 454 356
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHH---------HHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcC
Q 002900 177 KRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAV---------SKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAAT 247 (869)
Q Consensus 177 ~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~---------~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~ 247 (869)
...++.+.+++...|+-|+..|.=++.-+.......+ .+|+.-++ .++...|--.+|.+..+...+
T Consensus 242 sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs---~~sa~iqtPalR~vGNIVTG~-- 316 (526)
T COG5064 242 SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS---HESAKIQTPALRSVGNIVTGS-- 316 (526)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc---CccccccCHHHHhhcCeeecC--
Confidence 7788889999999999999888766655542211111 23343333 122223344566665433221
Q ss_pred CCCCc----hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhh-----HHHHHHHHHcCCCchhHHHHHHHhcc-
Q 002900 248 TQTGD----RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTP-----AITVLQLFLSSSKPVLRFAAVRTLNK- 317 (869)
Q Consensus 248 dp~~~----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~-----a~~~L~~~L~s~~~n~ry~aL~~l~~- 317 (869)
|.++. --.+.++.++|.+.-..+.-||+-+|..++....+.... .+.+|..+|++.+--+|=-|..++..
T Consensus 317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211 124577888898888899999999998886433333322 23467788888777776666555544
Q ss_pred --ccCCCCCH
Q 002900 318 --SLISDQNR 325 (869)
Q Consensus 318 --~~L~d~d~ 325 (869)
.+++-||.
T Consensus 397 tsgg~~~PD~ 406 (526)
T COG5064 397 TSGGLNRPDI 406 (526)
T ss_pred hccccCCchH
Confidence 66777764
No 99
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.82 E-value=0.76 Score=46.52 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=73.6
Q ss_pred hHHHhhcCCCCHHHHhHHHHHhccCCChhhHHH--HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-HHHHHHHH
Q 002900 109 SSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQ--IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-RWSNEVQE 185 (869)
Q Consensus 109 nsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~--l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-~~~~~l~~ 185 (869)
..+.+-+.+++..+|-.|++.+..+....++.+ .+|.+.-+..|+++.+|+.|.-.+-.+..++|+.+. ++.+.++.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345566789999999999999998776666655 478888888999999999999999999999999886 44444433
Q ss_pred Hh------c-CCChhH---HHHHHHHHHHHhhcCh
Q 002900 186 AV------Q-SRAALV---QFHALALLHQIRQNDR 210 (869)
Q Consensus 186 ~l------~-d~~~~v---~~~al~ll~~i~~~d~ 210 (869)
+. . +..... ..+.+..+|.+...++
T Consensus 91 af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r 125 (187)
T PF12830_consen 91 AFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNR 125 (187)
T ss_pred HHHHHHHhcCCccccccccchHHHHHHHHHHhccc
Confidence 22 1 111111 4555666777765443
No 100
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.69 E-value=35 Score=40.71 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHH-cCCCchhHHHHHHHhcc
Q 002900 254 PFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFL-SSSKPVLRFAAVRTLNK 317 (869)
Q Consensus 254 ~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L-~s~~~n~ry~aL~~l~~ 317 (869)
.+.+.+...|...-++|..||+.++..+...+...--.+++.+..++ +.|.+++|=++|..+..
T Consensus 126 ~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 126 KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 34444455566778888889988888875333333345666666555 45667888888877654
No 101
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.27 E-value=57 Score=42.35 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHH---hcCCChHHHHHHHHHHhhhcccChHHHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh
Q 002900 136 GTLLTQIERYLKQA---IVDKNPVVASAALVSGIHLLQTTPEIVK--RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 136 ~~~~~~l~~~i~~~---l~d~~p~VRk~A~lal~~L~~~~pe~v~--~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~ 210 (869)
.++.+..-++++.. +..+.+.||.+|+-|+-.+...+|.++. +....+...++|...+|.=+|+-++..-.-.++
T Consensus 808 r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 808 RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 44555555555444 4668899999999999999998988764 566667777888888898888888764333333
Q ss_pred hHHH----HHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcC
Q 002900 211 LAVS----KLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK 266 (869)
Q Consensus 211 ~~~~----~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~ 266 (869)
..+. .++..+...++.-.=-.++++|-++. . .|. -..+.+.+..+|+..
T Consensus 888 e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~---e---~pd-f~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 888 ELIFQYYDQIIERILDTGVSVRKRVIKILRDICE---E---TPD-FSKIVDMCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH---h---CCC-hhhHHHHHHHHHHHh
Confidence 3333 33443331112222233444444442 2 342 344556666666543
No 102
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.10 E-value=11 Score=41.26 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=90.0
Q ss_pred HHHHHHHHH-HhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHH
Q 002900 344 VDRLMKQIT-NFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENG 422 (869)
Q Consensus 344 v~~Il~eL~-~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~ 422 (869)
+..+++.|. ..+...+..+|...++.+|.+|.-....+...+..++..+. .++..++..++.++.+++..++-
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~----- 97 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGI----- 97 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCc-----
Confidence 346676655 45667778999999999999999877788888888888884 44556766666666666654430
Q ss_pred HHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc-Cc-hHHHHHHH
Q 002900 423 LLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD-AL-KPRVFVLL 500 (869)
Q Consensus 423 l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~-~l-~~~i~~ll 500 (869)
+.++....+. .......+++.++.-+..+++.+|+.+...++|+....- .- ...+..++
T Consensus 98 -----~~~~~~~~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Ll 158 (298)
T PF12719_consen 98 -----DIFDSESDND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLL 158 (298)
T ss_pred -----hhccchhccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 1111100000 111234455556655556688899999999999888642 11 22333444
Q ss_pred HHhh---cCCCHHHHHHHH
Q 002900 501 RRCL---YDGDDEVRDRAT 516 (869)
Q Consensus 501 ~~~~---~d~d~evrdRA~ 516 (869)
-.+. ...+..+||==.
T Consensus 159 l~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 159 LLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred HHHcCcccCCcHHHHHHHH
Confidence 4332 223456666333
No 103
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.86 E-value=8.2 Score=46.36 Aligned_cols=191 Identities=14% Similarity=0.149 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC---CcchH
Q 002900 325 RSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG---GFEYK 401 (869)
Q Consensus 325 ~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g---~~~~~ 401 (869)
...|..=+|+|...|+...+..|.+.+.+ .+.+..-...++..+.... ++| ...+++.+..++.... ...+.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~--~~~~~~ea~~~~~~~~~~~-~~P--t~~~l~~l~~l~~~~~~~~~~~l~ 414 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN--KKITPLEAAQLLAVLPHTA-RYP--TEEILKALFELAESPEVQKQPYLR 414 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhh-hcC--CHHHHHHHHHHhcCccccccHHHH
Confidence 45778889999999999999999998887 3444433344444333332 223 3467888888887532 12244
Q ss_pred HHHHHHHHHHHHh----CCch----HHHHHHHHHHhhhcc---CchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCC
Q 002900 402 KAIVDSIVILIRD----IPDA----KENGLLHLCEFIEDC---EFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLE 470 (869)
Q Consensus 402 ~~iv~~i~~ii~~----~p~~----~~~~l~~L~~~l~~~---~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e 470 (869)
..+|-.+-.++++ .+.. .+..+..+.+.+.++ ...+-...++-.||.-|.. .....+..+...-..-
T Consensus 415 ~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--~~i~~l~~~l~~~~~~ 492 (574)
T smart00638 415 ESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--SSIKVLEPYLEGAEPL 492 (574)
T ss_pred HHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--hHHHHHHHhcCCCCCC
Confidence 5555555555543 3322 245555555555443 2223344567888988764 3333443333322233
Q ss_pred CHHHHHHHHHHHHHHhccccC-chHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCC
Q 002900 471 NATVRAAAVSTLAKFGAMVDA-LKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDG 526 (869)
Q Consensus 471 ~~~vr~~~ltal~Kl~~~~~~-l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~~ 526 (869)
++.+|.+++.|+-+++..+|. .++.+..++. -.+.+.|||--| |+.++...|
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~--n~~e~~EvRiaA--~~~lm~t~P 545 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRKVQEVLLPIYL--NRAEPPEVRMAA--VLVLMETKP 545 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc--CCCCChHHHHHH--HHHHHhcCC
Confidence 678999999999999877773 4443444432 124568887555 556676654
No 104
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.52 E-value=2.3 Score=51.50 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=69.2
Q ss_pred HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHH
Q 002900 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQ 184 (869)
Q Consensus 105 ~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~ 184 (869)
--..+.+.+.....+..-+-.+|++|||++.++.++.+.+.+..-- +.++.+|..|+.|+.++....|+.++..+-.+.
T Consensus 489 ~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~ 567 (618)
T PF01347_consen 489 PYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIF 567 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHh
Confidence 3444556666667788999999999999999999988887763322 447999999999999998889988876554443
Q ss_pred HHhcCCChhHHHHHHHHHHHHhh
Q 002900 185 EAVQSRAALVQFHALALLHQIRQ 207 (869)
Q Consensus 185 ~~l~d~~~~v~~~al~ll~~i~~ 207 (869)
.= ...++-+..+|+.+|....+
T Consensus 568 ~n-~~e~~EvRiaA~~~lm~~~P 589 (618)
T PF01347_consen 568 MN-TTEDPEVRIAAYLILMRCNP 589 (618)
T ss_dssp H--TTS-HHHHHHHHHHHHHT--
T ss_pred cC-CCCChhHHHHHHHHHHhcCC
Confidence 31 23356788888777666444
No 105
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.27 E-value=47 Score=39.70 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=86.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC----cch-hHhhhhHHH
Q 002900 38 DPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS----ADE-VIIVTSSLM 112 (869)
Q Consensus 38 ~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~----~d~-~~Lvinsl~ 112 (869)
+.+..+.+.-..+.+.+.-+-+- +.+.--+..+|..+++-..|+|..+|.=+...+..+.+. +|. .-...-.+.
T Consensus 54 Kresi~dRIl~fla~fv~sl~q~-d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~ 132 (892)
T KOG2025|consen 54 KRESIPDRILSFLARFVESLPQL-DKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLL 132 (892)
T ss_pred cCCCcHHHHHHHHHHHHHhhhcc-CchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHH
Confidence 34556666666677766655532 222223556788888888999999888888777666652 333 335556667
Q ss_pred hhcCCCCHHHHhHHHHHhccCCChhhH--HHHHHHHHHHh-cCCChHHHHHHHHHHhh
Q 002900 113 KDMTSKTDMYRANAIRVLCRITDGTLL--TQIERYLKQAI-VDKNPVVASAALVSGIH 167 (869)
Q Consensus 113 kDl~s~n~~vr~lALr~L~~I~~~~~~--~~l~~~i~~~l-~d~~p~VRk~A~lal~~ 167 (869)
+=+.|..|.+|-.|+-+||...+.+-= -.+.+.++..+ .|+++-|||+|+.++.-
T Consensus 133 ~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 133 IRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 778899999999999999998732211 11333333334 68999999999888763
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.97 E-value=53 Score=39.79 Aligned_cols=135 Identities=18% Similarity=0.134 Sum_probs=84.1
Q ss_pred cCCCccchhHHHHHHHHhCCC-cch-----hHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhh---------------
Q 002900 80 QSRDIGLRRMVYLMIKELSPS-ADE-----VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTL--------------- 138 (869)
Q Consensus 80 ~s~d~~lKrl~Yl~l~~~~~~-~d~-----~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~--------------- 138 (869)
+|+=++-||=.-+.++.++.. .++ +-=.+++|++|-. |+.+.+-||-+++.+...+=
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 678889999999999988874 333 2346888999865 67888999999998654331
Q ss_pred ---HH------HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-------HHHHHHHHHhcCCChhHHHHHHHHH
Q 002900 139 ---LT------QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-------RWSNEVQEAVQSRAALVQFHALALL 202 (869)
Q Consensus 139 ---~~------~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-------~~~~~l~~~l~d~~~~v~~~al~ll 202 (869)
++ ..+..+...+.+.+=+||+.|+-=+-.+...-|--++ .-+..+.++|.|....+.-.|+.+|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 11 1334455556667777888877665555554443333 2335555666665444444555555
Q ss_pred HHHhhcChhHHHHHH
Q 002900 203 HQIRQNDRLAVSKLV 217 (869)
Q Consensus 203 ~~i~~~d~~~~~~li 217 (869)
.++.+.+ .++.||+
T Consensus 191 ~eL~k~n-~~IQKlV 204 (970)
T KOG0946|consen 191 SELVKDN-SSIQKLV 204 (970)
T ss_pred HHHHccC-chHHHHH
Confidence 6655443 3444444
No 107
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.68 E-value=1.6 Score=44.88 Aligned_cols=148 Identities=15% Similarity=0.077 Sum_probs=94.7
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCC-CH-HHHhHHHHHhccCCChhhHHHHHHHHHHHhcC
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSK-TD-MYRANAIRVLCRITDGTLLTQIERYLKQAIVD 152 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~-n~-~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d 152 (869)
.-.++++...+.|-++++++....+.-+.. .+..+.+-+.+- |- ..=++|-+.++.+.... +.+.+.+.+.+.+
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~~~~~~--~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~s 131 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRKKLTEE--DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAKS 131 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGGG--HH--HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHHC
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhhhhhHH--HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHhC
Confidence 345678888888888888885433221111 344455544333 22 34456566666653322 4456677777799
Q ss_pred CChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhH
Q 002900 153 KNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLA 230 (869)
Q Consensus 153 ~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~ 230 (869)
.++++||.|++++.+.+.. +-...++..+...+.|.+..|+-+.--+|-++...++..+...+.+-. + ..++|.
T Consensus 132 ~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~-~-~~~~~~ 205 (213)
T PF08713_consen 132 DNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS-D-RLSRWT 205 (213)
T ss_dssp SSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS-------HHH
T ss_pred CcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc-c-cCchhH
Confidence 9999999999999988766 444567777777788888888887777888998888877776665422 1 355665
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.54 E-value=13 Score=46.65 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=61.7
Q ss_pred ccCCCCCHHHHHHHHHHhhcc----CChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc--HHHHHHHHHHH
Q 002900 318 SLISDQNRSIATLAITTLLKT----GNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNI 391 (869)
Q Consensus 318 ~~L~d~d~sI~~~aL~lL~~l----~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~--~~~~v~~ll~l 391 (869)
.++.|+++.+|+--|+-+.-+ |-+.+=+.|+..|..|+.+.|..+|....++|..+|.=.... .+.++-.|.+-
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQG 664 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHh
Confidence 456677666666555554444 578888899999999999999999999999998776533322 33444555555
Q ss_pred HhhcCCcchHHHHHHHHHHHHH
Q 002900 392 LREEGGFEYKKAIVDSIVILIR 413 (869)
Q Consensus 392 l~~~g~~~~~~~iv~~i~~ii~ 413 (869)
|.+...+++ ..+...+.-+++
T Consensus 665 ltD~EE~Vi-v~aL~~ls~Lik 685 (1431)
T KOG1240|consen 665 LTDGEEAVI-VSALGSLSILIK 685 (1431)
T ss_pred ccCcchhhH-HHHHHHHHHHHH
Confidence 565544433 333434444443
No 109
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.36 E-value=49 Score=38.56 Aligned_cols=122 Identities=13% Similarity=0.200 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHH-hccC----CChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHH
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAIT-ELNG----VTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSI 327 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~-~l~~----~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI 327 (869)
+.+++.+.++|+++.++++++-+-+-+ .+.+ .-.+.....+..|.+-| +..|+-+
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al--------------------n~~d~~v 655 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL--------------------NCTDRFV 655 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh--------------------cchhHHH
Confidence 457788888888877766555443332 2211 01122223333333333 3334444
Q ss_pred HHHHHHHhhccCChhhH------HHHHHHHHHhhh--hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhh
Q 002900 328 ATLAITTLLKTGNESSV------DRLMKQITNFMS--DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (869)
Q Consensus 328 ~~~aL~lL~~l~~e~nv------~~Il~eL~~y~~--~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~ 394 (869)
..-|+.+.-.++|.-+- +.++.-|...++ ..+.++|-.++.--+.+|.........|++-+.-++..
T Consensus 656 ~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 656 LNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444333222 233334433333 23456788888888888887777888888887766654
No 110
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=88.84 E-value=0.67 Score=44.42 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=46.7
Q ss_pred eEEEEEEEEeC-CcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCc--eEEEEEe
Q 002900 637 YAVNVVKHIFD-RHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPG--QIFGAFE 704 (869)
Q Consensus 637 y~v~~~k~~~~-~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~--~~~v~~~ 704 (869)
|.-..-.|.|. .++.+|+.++|+. ++.++|+++.=.... .++++....+++.|+||++. .+.|.|.
T Consensus 73 Y~F~RqP~~~s~~mvsIql~ftN~s-~~~i~~I~i~~k~l~-~g~~i~~F~~I~~L~pg~s~t~~lgIDF~ 141 (145)
T PF14796_consen 73 YRFSRQPSLYSPSMVSIQLTFTNNS-DEPIKNIHIGEKKLP-AGMRIHEFPEIESLEPGASVTVSLGIDFN 141 (145)
T ss_pred EEEccCCcCCCCCcEEEEEEEEecC-CCeecceEECCCCCC-CCcEeeccCcccccCCCCeEEEEEEEecc
Confidence 43333444555 4789999999998 579999988543322 25899888899999999974 3555553
No 111
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.27 E-value=95 Score=40.47 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=122.8
Q ss_pred HHHHHHhhcc--CChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc-HHHHHHHHHHHHhh--cCCcchHHH
Q 002900 329 TLAITTLLKT--GNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILRE--EGGFEYKKA 403 (869)
Q Consensus 329 ~~aL~lL~~l--~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~-~~~~v~~ll~ll~~--~g~~~~~~~ 403 (869)
..--++++.+ +.+.-+-.++.+|..-+...+.++|.+++.-+|.+-...... .+.+-++...+|.. .+...+.=+
T Consensus 240 ~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~ 319 (1266)
T KOG1525|consen 240 IKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRME 319 (1266)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhh
Confidence 3333444444 566666678888888777788899999999999986543221 11222233333322 244567778
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCC----CCCChHHHHHHHHhhccCCCHHHHHHHH
Q 002900 404 IVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGP----KTSDPSKYIRYIYNRVHLENATVRAAAV 479 (869)
Q Consensus 404 iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~----~~~~~~~~l~~i~~~~~~e~~~vr~~~l 479 (869)
++..+.+.+-++|+..+.....+.-...+.+ +..+.+..-+++...- ..-.|. .+..+.+|.-.-...||..++
T Consensus 320 ~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D-~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am 397 (1266)
T KOG1525|consen 320 CVESIKQCLLNNPSIAKASTILLALRERDLD-EDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAM 397 (1266)
T ss_pred HHHHhHHHHhcCchhhhHHHHHHHHHhhcCC-hhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHH
Confidence 8899999999999887654444433322222 2232222222222211 011244 788888888877899999999
Q ss_pred HHHHHHhcc--c--c--------------------------CchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 002900 480 STLAKFGAM--V--D--------------------------ALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSD 525 (869)
Q Consensus 480 tal~Kl~~~--~--~--------------------------~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~ 525 (869)
..++++|.+ + + +.+..+..+|..++...+.++|+|-.-.+.++..-
T Consensus 398 ~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~ 473 (1266)
T KOG1525|consen 398 NGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGL 473 (1266)
T ss_pred HHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Confidence 999999985 1 0 12345678888888888999999988666666553
No 112
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=88.17 E-value=63 Score=38.33 Aligned_cols=217 Identities=15% Similarity=0.171 Sum_probs=112.6
Q ss_pred hhcCCCCHHHHhHHHHHhccCCChhh------HHH-HHHHHHHHh----cCCChHHHHHHHHHHhhhcccChHHHH----
Q 002900 113 KDMTSKTDMYRANAIRVLCRITDGTL------LTQ-IERYLKQAI----VDKNPVVASAALVSGIHLLQTTPEIVK---- 177 (869)
Q Consensus 113 kDl~s~n~~vr~lALr~L~~I~~~~~------~~~-l~~~i~~~l----~d~~p~VRk~A~lal~~L~~~~pe~v~---- 177 (869)
..++...|.+|.++++-.+-.-.-+. ..+ +...++..+ .+++..++++|++|+..+.+. -+.++
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srs-V~aL~tg~~ 416 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRS-VSALRTGLK 416 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHH-HHHHHcCCc
Confidence 35677889999999987654322111 111 222222222 456778999999998744321 11111
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhh
Q 002900 178 --RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF 255 (869)
Q Consensus 178 --~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l 255 (869)
+....+..++.|++.+|+..++++++.+.-. + +++ +-++|+. -.
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVme-----------f------s~~-kskfl~~----------------ng 462 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVME-----------F------SNL-KSKFLRN----------------NG 462 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh-----------c------ccH-HHHHHHc----------------Cc
Confidence 3444555666777778888888876655432 1 121 1111111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc----ccCCCCCHHHHHHH
Q 002900 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----SLISDQNRSIATLA 331 (869)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~----~~L~d~d~sI~~~a 331 (869)
++.+...+.+..+.+.-.+.+++.++. =..+...++.-++-+.. .+++|+|..|..-+
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~------------------f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLM------------------FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHH------------------hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence 344444454444444444444444331 01111111111111111 34688888888888
Q ss_pred HHHhhccCC--hhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhc
Q 002900 332 ITTLLKTGN--ESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE 395 (869)
Q Consensus 332 L~lL~~l~~--e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~ 395 (869)
+.+|=.+.. ++.|+-++++-.. ++.+|...- |++......+.++...+...
T Consensus 525 fqllRNl~c~~~~svdfll~~~~~------------~ld~i~l~l-k~a~~~pi~ie~~~~~~~l~ 577 (678)
T KOG1293|consen 525 FQLLRNLTCNSRKSVDFLLEKFKD------------VLDKIDLQL-KIAIGSPILIEFLAKKMRLL 577 (678)
T ss_pred HHHHHHhhcCcHHHHHHHHHhhhH------------HHHHHHHHH-hhccCCceehhhHHHHHHhc
Confidence 888866633 4778877776433 334444333 55665555566655555543
No 113
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=44 Score=36.27 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=65.0
Q ss_pred hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch-HHHHHHHHHHhh-----
Q 002900 357 DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA-KENGLLHLCEFI----- 430 (869)
Q Consensus 357 ~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~-~~~~l~~L~~~l----- 430 (869)
..|.+....+|+++|.+...-... + ++...|.- ..-+.+..+..++... ++.+++.|...-
T Consensus 315 mnDpdaieaAiDalGilGSnteGa-----d----lllkTgpp----aaehllarafdqnahakqeaaihaLaaIagelrl 381 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNTEGA-----D----LLLKTGPP----AAEHLLARAFDQNAHAKQEAAIHALAAIAGELRL 381 (524)
T ss_pred cCCchHHHHHHHHHHhccCCcchh-----H----HHhccCCh----HHHHHHHHHhcccccchHHHHHHHHHHhhccccC
Confidence 456678889999999987642221 1 22223321 1233444555554433 333444443321
Q ss_pred --hccCc--hhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcc
Q 002900 431 --EDCEF--TYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAM 488 (869)
Q Consensus 431 --~~~~~--~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~ 488 (869)
+.+.+ .+.+.+++|+=.---..--+|.++++.+.. ...|+++++++.++.-++.+
T Consensus 382 kpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq---QpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 382 KPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ---QPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred ChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc---CCChhhHHHHHHHHHHHHcC
Confidence 11223 233455677643322222379999888865 35789999999998888774
No 114
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.00 E-value=45 Score=36.43 Aligned_cols=262 Identities=17% Similarity=0.185 Sum_probs=127.5
Q ss_pred HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-HHHHHH
Q 002900 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-RWSNEV 183 (869)
Q Consensus 105 ~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-~~~~~l 183 (869)
+==++++.+-+.+ +.-.++|-|++..=.+.- +.++...+ +-..++..|-++++-++.++..+-|++.. .-.+-+
T Consensus 76 ~~E~s~ll~~l~d--~ck~~~A~r~la~~~ga~--~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vv 150 (461)
T KOG4199|consen 76 LEETTELLEQLAD--ECKKSLAHRVLAGKNGAH--DALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVV 150 (461)
T ss_pred hHHHHHHHHHHHH--HHhhhHHHHHHhccCCCc--chhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHH
Confidence 3345666676774 888999999998644332 22333333 35678888999999999999999998765 333444
Q ss_pred HHHhcCC--ChhHHHHHH------HHHHHHhhcChh--HHHHHHHhhc--cCCCCChhHHHHHHHHHHHhhhhhcCCCCC
Q 002900 184 QEAVQSR--AALVQFHAL------ALLHQIRQNDRL--AVSKLVTSLT--RGTVRSPLAQCLLIRYTTQVIREAATTQTG 251 (869)
Q Consensus 184 ~~~l~d~--~~~v~~~al------~ll~~i~~~d~~--~~~~li~~l~--~~~~~~~~~~v~llr~l~~~~~~~~~dp~~ 251 (869)
.++|+++ +.-+....+ ++.+|..+++-+ .+.+|+.+.. .|...---..+-.+|.+. .++ |-+.
T Consensus 151 v~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~---~dD--DiRV 225 (461)
T KOG4199|consen 151 LKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALL---TDD--DIRV 225 (461)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhc---CCC--ceee
Confidence 4444432 222333333 233444443221 2334444322 221000001112223221 010 1100
Q ss_pred -chhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHH------HHcCCCchhHHHHHHHhccccCCCC-
Q 002900 252 -DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQL------FLSSSKPVLRFAAVRTLNKSLISDQ- 323 (869)
Q Consensus 252 -~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~------~L~s~~~n~ry~aL~~l~~~~L~d~- 323 (869)
...-...-..+-+..--.++.||..+.+. ++ .+..+...|+. |+.+ ..---+|+++- +|+.|.
T Consensus 226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d-p~----~L~~l~~tl~~lAVr~E~C~~---I~e~GGl~tl~-~~i~d~n 296 (461)
T KOG4199|consen 226 VFGQAHGHARTIAKEGILTALTEALQAGID-PD----SLVSLSTTLKALAVRDEICKS---IAESGGLDTLL-RCIDDSN 296 (461)
T ss_pred ecchhhHHHHHHHHhhhHHHHHHHHHccCC-cc----HHHHHHHHHHHHHHHHHHHHH---HHHccCHHHHH-HHHhhhc
Confidence 01111222222222223455555555443 11 11111111111 1111 00011233322 445553
Q ss_pred ---CHHHHHHHHHHhhccCChhhHH-HHHHH-----HHHhh--hhccHHHHHHHHHHHHHHHhhCCccHHHHH
Q 002900 324 ---NRSIATLAITTLLKTGNESSVD-RLMKQ-----ITNFM--SDIADEFKIVVVEAIRSLCLKFPLKYRSLM 385 (869)
Q Consensus 324 ---d~sI~~~aL~lL~~l~~e~nv~-~Il~e-----L~~y~--~~~~~~~r~~~v~aI~~la~k~~~~~~~~v 385 (869)
++...+.++.+|-+++..++++ .|++. |...+ ...++..-.++.-.|..||.|-|+.....+
T Consensus 297 ~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~i 369 (461)
T KOG4199|consen 297 EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAI 369 (461)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 3667788999999996555444 44431 22211 134667888999999999999888766543
No 115
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=7.8 Score=44.61 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHHHHHh-hhhccHHHHHHHHHHHHHHHhhCC
Q 002900 348 MKQITNF-MSDIADEFKIVVVEAIRSLCLKFP 378 (869)
Q Consensus 348 l~eL~~y-~~~~~~~~r~~~v~aI~~la~k~~ 378 (869)
++.|++| +++.+++.|+.+|-++|-.|.+.+
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc~~D~ 584 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR 584 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeEecCc
Confidence 3444444 455555555555555555555433
No 116
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.72 E-value=20 Score=42.59 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=50.2
Q ss_pred HhhhhHHHhhcCCCCHHHHhHHHHHhcc---CCChhh--------HHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccC-
Q 002900 105 IIVTSSLMKDMTSKTDMYRANAIRVLCR---ITDGTL--------LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTT- 172 (869)
Q Consensus 105 ~Lvinsl~kDl~s~n~~vr~lALr~L~~---I~~~~~--------~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~- 172 (869)
.|.--.|-+-|+-+|-.+|.+|+..+-+ |++|+. ++.=.+.+.++|.|.-|.||+.|..++.|++...
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777777665 455543 2223455666777777777777777777765433
Q ss_pred ----hHHHHHHHHHHHHH
Q 002900 173 ----PEIVKRWSNEVQEA 186 (869)
Q Consensus 173 ----pe~v~~~~~~l~~~ 186 (869)
|.++.+++..+.+-
T Consensus 253 e~iP~~i~~~ll~kI~d~ 270 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDE 270 (1005)
T ss_pred HHcCHHHHHHHHHHHHHH
Confidence 33344444444443
No 117
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.46 E-value=4.5 Score=49.73 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=92.8
Q ss_pred chhhhhHHHHHhhcCCCccchhHHHH-HHHHhCCC-cchhHhhhh-------HHHhhcCCCCHHHHhHHHHHhccCCChh
Q 002900 67 EATEVFFAVTKLFQSRDIGLRRMVYL-MIKELSPS-ADEVIIVTS-------SLMKDMTSKTDMYRANAIRVLCRITDGT 137 (869)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~Yl-~l~~~~~~-~d~~~Lvin-------sl~kDl~s~n~~vr~lALr~L~~I~~~~ 137 (869)
....+|+.|+||+||+-.++|.+.-. -.+-++-. +-.+-|+=. ++..|-+.-++.-|++|-=.|+.|...-
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 44569999999999999999986544 44445543 222222211 0111112335689999999988875431
Q ss_pred h-------HHHHHHHHHHHhcC-CChHHHHHHHHHHhhhcccChHHH----H-HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002900 138 L-------LTQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIV----K-RWSNEVQEAVQSRAALVQFHALALLHQ 204 (869)
Q Consensus 138 ~-------~~~l~~~i~~~l~d-~~p~VRk~A~lal~~L~~~~pe~v----~-~~~~~l~~~l~d~~~~v~~~al~ll~~ 204 (869)
- -..++..=...++| +.|..|.-.++|+.+|...+++.= + .-.+++..+|.|.-|.|..+|+-+|..
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 11133333344566 479999999999999999887641 1 244677788889899999999888876
Q ss_pred Hhh
Q 002900 205 IRQ 207 (869)
Q Consensus 205 i~~ 207 (869)
.-.
T Consensus 669 fl~ 671 (1387)
T KOG1517|consen 669 FLS 671 (1387)
T ss_pred Hhc
Confidence 554
No 118
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.33 E-value=41 Score=36.64 Aligned_cols=111 Identities=13% Similarity=0.178 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-------ccCCCCCH
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------SLISDQNR 325 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-------~~L~d~d~ 325 (869)
..+-.++.+.+++.+++|.-.|++++.-..-...+.-......+...+...+..+|-.|++++.. ..+.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 34446777889999999999999988543211222222333444444455577888888888754 11111100
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHh
Q 002900 326 SIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCL 375 (869)
Q Consensus 326 sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~ 375 (869)
.. .......+++-+.+|+.+.+++.+..+++.+++|-.
T Consensus 106 ~~------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 106 ND------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred cC------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 00 334556788888888888888999999999999755
No 119
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=84.90 E-value=43 Score=41.32 Aligned_cols=129 Identities=12% Similarity=0.184 Sum_probs=92.2
Q ss_pred HHHHhHHHHHhccCCC--hhhHHHHHHHHHHHhc-CCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHH
Q 002900 120 DMYRANAIRVLCRITD--GTLLTQIERYLKQAIV-DKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQF 196 (869)
Q Consensus 120 ~~vr~lALr~L~~I~~--~~~~~~l~~~i~~~l~-d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~ 196 (869)
+.+|+.++-+|++++- ..++.-.+|.+.+-|. .....||..-++++..++-.|.-.+.++++.|...|+|+++.|..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHH
Confidence 7899999999998654 4577767777666664 455779999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHH-HHHHHHhcCCh
Q 002900 197 HALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYD-FLESCLRHKAE 268 (869)
Q Consensus 197 ~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~-~l~~~L~~~~~ 268 (869)
+++.+|..+-+.+ .--|.-..++|++..++.. +|..+ .+-+ ++..+|++.++
T Consensus 1025 qt~ilL~rLLq~~----------------~vKw~G~Lf~Rf~l~l~D~---~edIr-~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1025 QTIILLARLLQFG----------------IVKWNGELFIRFMLALLDA---NEDIR-NDAKFYISEVLQSEEP 1077 (1529)
T ss_pred HHHHHHHHHHhhh----------------hhhcchhhHHHHHHHHccc---CHHHH-HHHHHHHHHHHhhcCc
Confidence 9999887666542 2245556667776654322 22222 1212 34556666554
No 120
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.77 E-value=13 Score=44.43 Aligned_cols=93 Identities=23% Similarity=0.214 Sum_probs=61.8
Q ss_pred hhcCCCCHHHHhHHHHH--hccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCC
Q 002900 113 KDMTSKTDMYRANAIRV--LCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSR 190 (869)
Q Consensus 113 kDl~s~n~~vr~lALr~--L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~ 190 (869)
.-+.|.||..|....-+ |+..++.. ...+-+.+.=+++|.+-.|||+|++|+.-+.-++|+.+...+.-+.+ +-
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgn-nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse---s~ 601 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGN-NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE---SY 601 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCc-hhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhh---hc
Confidence 33455688888544433 33344322 12222222333589999999999999998888899988776655544 45
Q ss_pred ChhHHHHHHHHHHHHhhcC
Q 002900 191 AALVQFHALALLHQIRQND 209 (869)
Q Consensus 191 ~~~v~~~al~ll~~i~~~d 209 (869)
||.|.+.|..+|.-.|...
T Consensus 602 N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 602 NPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ChhhhhhHHHHHhhhhcCC
Confidence 8999999888887777653
No 121
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.52 E-value=81 Score=36.05 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhccc---ChHHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQT---TPEIVK-RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~---~pe~v~-~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~ 210 (869)
+..-+.+.+...+|-.|+..+.-++.+.-+ .|..+. .+++.+..++++... -+-|+.+||++.-+|+
T Consensus 346 iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 346 IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD 416 (791)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH
Confidence 344456667888999999988887766422 355554 688899888876542 1237788898886653
No 122
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=84.06 E-value=12 Score=34.24 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=39.0
Q ss_pred EEEEEEEEe---CCcEEEEEEeecCCCccccccEEEEEecCCcccceEEeecc-CCCCCCCCCceEEEEEec
Q 002900 638 AVNVVKHIF---DRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKP-LRSLPYDSPGQIFGAFEK 705 (869)
Q Consensus 638 ~v~~~k~~~---~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~-~~~L~~~~~~~~~v~~~~ 705 (869)
+..+++..+ .+.+.+.+.+.|++ ..+++||.+++..... +++....+ -..|+|+++....+.+..
T Consensus 11 l~I~~~~~~~~~~~~~~i~~~f~N~s-~~~it~f~~q~avpk~--~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 11 LQIGFKSEKSPNPNQGRIKLTFGNKS-SQPITNFSFQAAVPKS--FKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp EEEEEEEEECCETTEEEEEEEEEE-S-SS-BEEEEEEEEEBTT--SEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred EEEEEEEEecCCCCEEEEEEEEEECC-CCCcceEEEEEEeccc--cEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 344555555 34555555555664 5689999999976543 66665433 458999887666666655
No 123
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.80 E-value=56 Score=38.22 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC-----hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHH
Q 002900 421 NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD-----PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPR 495 (869)
Q Consensus 421 ~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~-----~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~ 495 (869)
.++.++.+..+. ++-.++.+++-++.--.+.+.. ..-++..+..|+..-.+.||..++-++.++---...-...
T Consensus 91 ~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 445555555554 3334444444443333222211 2234456667777778899999999999985432222234
Q ss_pred HHHHHHHh-hcCCCHHHHHHH
Q 002900 496 VFVLLRRC-LYDGDDEVRDRA 515 (869)
Q Consensus 496 i~~ll~~~-~~d~d~evrdRA 515 (869)
+..+|... .+|.+.|||.-|
T Consensus 170 ~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 170 IVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHHH
Confidence 44555544 478888888544
No 124
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.65 E-value=62 Score=37.13 Aligned_cols=180 Identities=13% Similarity=0.172 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHhhCCcc--HHHHHHHHHHHHhhcCCcchHHHHHH----HHHHHHHhC
Q 002900 343 SVDRLMKQITNFMSDI-ADEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNILREEGGFEYKKAIVD----SIVILIRDI 415 (869)
Q Consensus 343 nv~~Il~eL~~y~~~~-~~~~r~~~v~aI~~la~k~~~~--~~~~v~~ll~ll~~~g~~~~~~~iv~----~i~~ii~~~ 415 (869)
+...+++++.+..... +...|..+.+.++.++.|++.. .+.+++.+...+............++ ..+-++-++
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4555777777765433 3566888999999999999765 44555555554411111112222333 333444444
Q ss_pred CchHHHHHHHHHHhhhccCchhHHHHHHh-hhcCCCCCCC---C-------hHHHHH----HHHhhccCCCHHHHHHHHH
Q 002900 416 PDAKENGLLHLCEFIEDCEFTYLSTQILH-FLGTEGPKTS---D-------PSKYIR----YIYNRVHLENATVRAAAVS 480 (869)
Q Consensus 416 p~~~~~~l~~L~~~l~~~~~~~~~~~~l~-ilGE~~~~~~---~-------~~~~l~----~i~~~~~~e~~~vr~~~lt 480 (869)
...-...+..|++.+.+.+.....+..+. ++++...... + ..+++. .+.+.+..-+...|...+.
T Consensus 266 ~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 266 HPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred CchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 44455678889998888554554444444 4555322211 1 122232 2333344445558999999
Q ss_pred HHHHHhccccC-----chHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 002900 481 TLAKFGAMVDA-----LKPRVFVLLRRCLYDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 481 al~Kl~~~~~~-----l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll 522 (869)
|++-+....|. -.+.+..++-.++.-.|.+++--+...+..+
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMI 392 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999888772 1245777777788888888888777654443
No 125
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=83.63 E-value=8 Score=37.90 Aligned_cols=113 Identities=11% Similarity=0.125 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhhhccCch--hHHHH-HHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHH
Q 002900 405 VDSIVILIRDIPDAKENGLLHLCEFIEDCEFT--YLSTQ-ILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVST 481 (869)
Q Consensus 405 v~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~--~~~~~-~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~lta 481 (869)
.+.+..+++.+++.+..+++.+.+.|-....+ .-... ..+++-.+.....+...-++.+++.+..-++.+-..++.|
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~A 118 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRA 118 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45677888889999999999999887543322 11112 2233333222223333445556665655577777788888
Q ss_pred HHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHH
Q 002900 482 LAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATL 517 (869)
Q Consensus 482 l~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~ 517 (869)
+.=+....+.+++.+.-++++.+++.+.+.|.-|.-
T Consensus 119 l~PLi~~s~~lrd~lilvLRKamf~r~~~~R~~Av~ 154 (158)
T PF14676_consen 119 LLPLIKFSPSLRDSLILVLRKAMFSRELDARQMAVN 154 (158)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTT-SSHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 877777678899999999999999999999987753
No 126
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.31 E-value=4.3 Score=44.40 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=63.6
Q ss_pred hcCCCCHHHHhHHHHHhccCC--ChhhHHHHH-----HHHHHHh-cCCChHHHHHHHHHHhhhcccChHHHHHHH-----
Q 002900 114 DMTSKTDMYRANAIRVLCRIT--DGTLLTQIE-----RYLKQAI-VDKNPVVASAALVSGIHLLQTTPEIVKRWS----- 180 (869)
Q Consensus 114 Dl~s~n~~vr~lALr~L~~I~--~~~~~~~l~-----~~i~~~l-~d~~p~VRk~A~lal~~L~~~~pe~v~~~~----- 180 (869)
-+++++..+|.+|.++++.+. .|..-+.++ +.+.+++ .+.+-.||++|+.|+.-+.+.+|.....|+
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 678999999999999999853 233333322 2334444 456678999999999999999887776544
Q ss_pred HHHHHHhcC--CChhHHHHHHHHHHHHhhc
Q 002900 181 NEVQEAVQS--RAALVQFHALALLHQIRQN 208 (869)
Q Consensus 181 ~~l~~~l~d--~~~~v~~~al~ll~~i~~~ 208 (869)
..+.+++.+ .+.....-|+.++..+.+.
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 455666665 3445555565555555443
No 127
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=82.80 E-value=2.8 Score=43.08 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=62.5
Q ss_pred HHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHH
Q 002900 110 SLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNE 182 (869)
Q Consensus 110 sl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~ 182 (869)
.+.+=+.|+|+..|-.|+-++......+-.+.+...+...+.|.+.|||+...-++-.++..+|+.+.+|+..
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3444568899999999998888877778888899999999999999999999999999999999999988876
No 128
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.33 E-value=17 Score=43.13 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=80.0
Q ss_pred hhhHHH-HHHHHHHHhcCCChHHHHHHHHHHhhhccc-ChHH--------HHHHHHHHHHHhcCCChhHHHHHHHHHH--
Q 002900 136 GTLLTQ-IERYLKQAIVDKNPVVASAALVSGIHLLQT-TPEI--------VKRWSNEVQEAVQSRAALVQFHALALLH-- 203 (869)
Q Consensus 136 ~~~~~~-l~~~i~~~l~d~~p~VRk~A~lal~~L~~~-~pe~--------v~~~~~~l~~~l~d~~~~v~~~al~ll~-- 203 (869)
.+|+-. ..+.+.++|.-+|..||..|+.-+..+|+. +||. +++=...+.++|.|.-|+|..-|+-=++
T Consensus 168 eeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 168 EEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred HHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 444444 356678888999999999999999999973 6665 2344567888999998988777643222
Q ss_pred -----HHhhcChhHHHHHHH----hhccCC-CCChhHHHHHHHHHHHhhhhhcCCCCCc---hhhHHHHHHHHhcCChHH
Q 002900 204 -----QIRQNDRLAVSKLVT----SLTRGT-VRSPLAQCLLIRYTTQVIREAATTQTGD---RPFYDFLESCLRHKAEMV 270 (869)
Q Consensus 204 -----~i~~~d~~~~~~li~----~l~~~~-~~~~~~~v~llr~l~~~~~~~~~dp~~~---~~l~~~l~~~L~~~~~aV 270 (869)
++-+. ..+.+++. ++..+. .--..+..+-+.++. . +|... +.+++.+...|+.++..|
T Consensus 248 ~s~fWe~iP~--~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l----~---np~sh~~le~~Lpal~~~l~D~se~V 318 (1005)
T KOG1949|consen 248 TSKFWEMIPP--TILIDLLKKITDELAFDTSSDVRCSVFKGLPMIL----D---NPLSHPLLEQLLPALRYSLHDNSEKV 318 (1005)
T ss_pred HHHHHHHcCH--HHHHHHHHHHHHHhhhccchheehhHhcCcHHHH----c---CccchhHHHHHHHhcchhhhccchhH
Confidence 22221 22333332 222110 001111222222221 1 34332 344556666677777777
Q ss_pred HHHHHHHHHhccC
Q 002900 271 IFEAARAITELNG 283 (869)
Q Consensus 271 ~~ea~~~i~~l~~ 283 (869)
...++..++.+.+
T Consensus 319 RvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 319 RVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777643
No 129
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=82.21 E-value=8.9 Score=43.37 Aligned_cols=175 Identities=13% Similarity=0.217 Sum_probs=96.2
Q ss_pred chhhhHHHH-HhhhcCC-CCCHHHHHHHHHHHHHHHhcCCCCCccc--hhhhhHHHHHhhcC-CCccchhHHHHHHHHhC
Q 002900 24 IEKGAVLQE-ARVFNDP-QLDPRRCSQVITKLLYLLNQGETFTKIE--ATEVFFAVTKLFQS-RDIGLRRMVYLMIKELS 98 (869)
Q Consensus 24 ~~k~~~~qe-~r~f~~~-~~~~~k~~~~l~kli~l~~~G~~~~~~e--~s~lf~~v~kl~~s-~d~~lKrl~Yl~l~~~~ 98 (869)
.++..-+++ +..++.. +.+.+ +.+|..|.-++.-|. |+--+ --.+.-.+.+.+.. .+...|++..=.+.++.
T Consensus 282 ~~~~~~v~~~l~~~~g~e~a~~~--k~alsel~~m~~e~s-fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml 358 (516)
T KOG2956|consen 282 VDQSALVADLLKEISGSERASER--KEALSELPKMLCEGS-FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREML 358 (516)
T ss_pred cchhHHHHHHHHhccCccchhHH--HHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 345554444 4566666 44444 788999999988884 22111 11222334444554 89999999998887776
Q ss_pred CC-----cchhHhhhhHHHhhcCCCCHHHHhH----HHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHH-HHhhh
Q 002900 99 PS-----ADEVIIVTSSLMKDMTSKTDMYRAN----AIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALV-SGIHL 168 (869)
Q Consensus 99 ~~-----~d~~~Lvinsl~kDl~s~n~~vr~l----ALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~l-al~~L 168 (869)
.. -|-.-++|-.+..--.++++.+.+. ++++++.+-...=+..+.+.|.. ..+=|-.|++ ++-|+
T Consensus 359 ~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 359 TNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT-----ADEPRAVAVIKMLTKL 433 (516)
T ss_pred HhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc-----CcchHHHHHHHHHHHH
Confidence 53 2556677777666555655544443 35556665544444444444422 1122223333 44566
Q ss_pred cccCh-----HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 002900 169 LQTTP-----EIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 169 ~~~~p-----e~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~ 206 (869)
+..-+ .++.++.+.+.+.-++....|.=.|+..|..+.
T Consensus 434 ~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 434 FERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 65332 345566666666665555555555544444443
No 130
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=82.14 E-value=1.5e+02 Score=37.40 Aligned_cols=425 Identities=14% Similarity=0.099 Sum_probs=205.9
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCC----C-cchhHhhhhHHHhhcCCC----CH-HHHhHHHHHhc--cCCChhhHHHH
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSP----S-ADEVIIVTSSLMKDMTSK----TD-MYRANAIRVLC--RITDGTLLTQI 142 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~----~-~d~~~Lvinsl~kDl~s~----n~-~vr~lALr~L~--~I~~~~~~~~l 142 (869)
+-+++++-+..--++..-+.+-+.. . .+++.=|+.++.- +-+| +. +--|+||--|+ .+--|+.++.+
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3345554444444555555554332 1 3445445554443 3332 22 44566666555 47788899999
Q ss_pred HHHHHHHhcC--------CChHHHHHHHHHHhhhccc-ChHHHHHHHHHH-----HHHhcCCChhHHHHHHHHHHHHhh-
Q 002900 143 ERYLKQAIVD--------KNPVVASAALVSGIHLLQT-TPEIVKRWSNEV-----QEAVQSRAALVQFHALALLHQIRQ- 207 (869)
Q Consensus 143 ~~~i~~~l~d--------~~p~VRk~A~lal~~L~~~-~pe~v~~~~~~l-----~~~l~d~~~~v~~~al~ll~~i~~- 207 (869)
.+.|.+++.= ....||-+|+..+--+++. .|..++.++..+ ..++-|+.-....+|.+++.|..-
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 9999999842 3467999999977766664 466566555433 344568888899999999887742
Q ss_pred -cC-h--hHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHH-HHHHhcCChHHHHHHHHHHHhcc
Q 002900 208 -ND-R--LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFL-ESCLRHKAEMVIFEAARAITELN 282 (869)
Q Consensus 208 -~d-~--~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l-~~~L~~~~~aV~~ea~~~i~~l~ 282 (869)
.+ | ..+.-.+.-++-+...+.|..+- +.+. . .|...+.+++-+ ..-+.|=+..+...|+.++..+.
T Consensus 502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~--~~ia----~---~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 502 QGNFPHGISLISTIDYFSVTNRSNCYLDLC--VSIA----E---FSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred CCCCCCchhhhhhcchhhhhhhhhHHHHHh--HHHH----h---hhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 11 1 22222222222111122233221 1222 1 244444444433 33356667889999999998775
Q ss_pred CCChHhHh-hHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHH---HHHHHHH--hhh
Q 002900 283 GVTNRELT-PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDR---LMKQITN--FMS 356 (869)
Q Consensus 283 ~~~~~~~~-~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~---Il~eL~~--y~~ 356 (869)
-..++... -....|..-..+++.+.|....-+... + --..+.+.=++.=-.+.-|.- |+..+.. |-.
T Consensus 573 ~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~e--v-----~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 573 LTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGE--V-----IGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYR 645 (1133)
T ss_pred HhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHH--H-----HHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhcc
Confidence 33344333 222223223344566655443222111 0 000000000000001111111 1111111 111
Q ss_pred hccHHHHHHHHHHHHHHHhhCCc-----cHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh----CCchHHHHHHHHH
Q 002900 357 DIADEFKIVVVEAIRSLCLKFPL-----KYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRD----IPDAKENGLLHLC 427 (869)
Q Consensus 357 ~~~~~~r~~~v~aI~~la~k~~~-----~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~----~p~~~~~~l~~L~ 427 (869)
....-+|....+.|..+...-+. ..+..-..+.+.++... .+++.++..+.+++.. ++..-..++.+.+
T Consensus 646 g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n--~i~~~av~av~~l~s~y~~~d~~~~~~li~~~l 723 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN--QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYL 723 (1133)
T ss_pred chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHH
Confidence 11122344444444444332221 11111122333332211 4556666666666543 3333334667788
Q ss_pred HhhhccCchhHHHHHHhhhcCCCC-CCCCh--HHHHHHHHhhccCC-CHHHHHHHHHHHHHHhccc-----cC----chH
Q 002900 428 EFIEDCEFTYLSTQILHFLGTEGP-KTSDP--SKYIRYIYNRVHLE-NATVRAAAVSTLAKFGAMV-----DA----LKP 494 (869)
Q Consensus 428 ~~l~~~~~~~~~~~~l~ilGE~~~-~~~~~--~~~l~~i~~~~~~e-~~~vr~~~ltal~Kl~~~~-----~~----l~~ 494 (869)
..+.+|.+...++.++-.+|--.. .+.-+ ....+.+..-+... .++-|.+.+-+++++.... ++ .+.
T Consensus 724 s~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e 803 (1133)
T KOG1943|consen 724 SRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRE 803 (1133)
T ss_pred HHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 888888888888777777766431 11111 11223333333333 6778888888888776532 22 233
Q ss_pred HHHHHHHHhhcCC----CHHHHHHHHHH
Q 002900 495 RVFVLLRRCLYDG----DDEVRDRATLY 518 (869)
Q Consensus 495 ~i~~ll~~~~~d~----d~evrdRA~~y 518 (869)
.+...+.-++.|. ..-||.-|.-.
T Consensus 804 ~LL~~lddYttd~rGDVGswVReaAm~a 831 (1133)
T KOG1943|consen 804 TLLNALDDYTTDSRGDVGSWVREAAMKA 831 (1133)
T ss_pred HHHHHHhhcccccCccHHHHHHHHHHHH
Confidence 3444444444433 36678766643
No 131
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.11 E-value=7.7 Score=40.78 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=27.2
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhc
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLL 169 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~ 169 (869)
||+|-.-+.+....+|-=+--++|.+..|.-++.+...+.. ...+|+||--|+-|+..+.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD--ETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh--hhcchHHHHHHHHHHHhhc
Confidence 34444444444555555555555555555444433333211 1134555555555555444
No 132
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.61 E-value=7 Score=34.93 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=49.6
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc-Cch---HHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 002900 458 KYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD-ALK---PRVFVLLRRCLYDGDDEVRDRATLYLNTVG 523 (869)
Q Consensus 458 ~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~-~l~---~~i~~ll~~~~~d~d~evrdRA~~yl~ll~ 523 (869)
+++.-+.+-+..+++.||-++..++..+..... ++. +.|...|-+...|.|+.||.-|.+.-++|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 344555667778899999999999888866543 333 445555667789999999999999888875
No 133
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.57 E-value=65 Score=36.77 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHhhCCccHH----HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch----HHHHHHHHHHhhh
Q 002900 360 DEFKIVVVEAIRSLCLKFPLKYR----SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA----KENGLLHLCEFIE 431 (869)
Q Consensus 360 ~~~r~~~v~aI~~la~k~~~~~~----~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~----~~~~l~~L~~~l~ 431 (869)
++.+..+-.-+.-+|+.--..|+ .++..+++.|++..+...+..+..++..++++.|.. -+-++.++++.-.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 33444444445555654333444 344446666666555667888888999999988844 4555555555544
Q ss_pred ccCchhHH---HHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc--Cc---hHHHHHHHHHh
Q 002900 432 DCEFTYLS---TQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD--AL---KPRVFVLLRRC 503 (869)
Q Consensus 432 ~~~~~~~~---~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~--~l---~~~i~~ll~~~ 503 (869)
|.+..-.. -.++-++.-| .|...+..|...+..++...-.+++..+.|++-+.+ ++ -+.+...+-.+
T Consensus 382 ds~~~v~~~Aeed~~~~las~-----~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASH-----LPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhh-----CchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 43321111 1233344443 344555555544444566666677778889888764 33 34455555556
Q ss_pred hcCCCHHHHHHHHHHHHHh
Q 002900 504 LYDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 504 ~~d~d~evrdRA~~yl~ll 522 (869)
..+.+..||.-|+|.+.-+
T Consensus 457 y~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred hcCchHHhhhhHHHhHHHH
Confidence 6778899999999876544
No 134
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.18 E-value=1.7e+02 Score=37.35 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=74.2
Q ss_pred hHhhhhHHHh-hcCCCCHHHHhHHHHHhccCCCh--------hhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh-
Q 002900 104 VIIVTSSLMK-DMTSKTDMYRANAIRVLCRITDG--------TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP- 173 (869)
Q Consensus 104 ~~Lvinsl~k-Dl~s~n~~vr~lALr~L~~I~~~--------~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p- 173 (869)
.+-..+++.. +.++.+.-+|--|-|.|..+... ..+..+...+.+.+.+...++|+.++-|+.+|++..|
T Consensus 651 ~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 651 QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH
Confidence 3333345554 45666888888887777664433 3455566666777777889999999999999999888
Q ss_pred ---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 002900 174 ---EIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 174 ---e~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~ 206 (869)
+.+.+.++++.=.+.+-|...-.+|+.+|+.|.
T Consensus 731 e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 731 EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHH
Confidence 566666666655556667778889999998887
No 135
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.05 E-value=17 Score=40.00 Aligned_cols=96 Identities=16% Similarity=0.223 Sum_probs=52.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHhhCCccHHHHH-----HHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH-----HH
Q 002900 354 FMSDIADEFKIVVVEAIRSLCLKFPLKYRSLM-----NFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN-----GL 423 (869)
Q Consensus 354 y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v-----~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~-----~l 423 (869)
|+...+.++|..+..-|+.++...|..-..++ ..|+..++.+++..++..+..++..+++++|-.+.. ..
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 55555566666666666666666665544443 235555555555556566666666777766644332 33
Q ss_pred HHHHHhhhcc-CchhHHHHHHhhhcCC
Q 002900 424 LHLCEFIEDC-EFTYLSTQILHFLGTE 449 (869)
Q Consensus 424 ~~L~~~l~~~-~~~~~~~~~l~ilGE~ 449 (869)
..|.+.+++- ....++++++.+++-+
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 3444555442 3445566666665544
No 136
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.91 E-value=1.2e+02 Score=35.58 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-----cchhHhhhhHHHh
Q 002900 39 PQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-----ADEVIIVTSSLMK 113 (869)
Q Consensus 39 ~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-----~d~~~Lvinsl~k 113 (869)
.+..+.+.-..++..+.+.+...+=|.--+..+|.+++.-..|+|...|+=+.-.+..+.+. .++.-...-.|.+
T Consensus 60 ~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 60 NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34445544554555554333332222222344555555555555555554444433333321 1112233333344
Q ss_pred hcCCCCHHHHhHHHHHhccC
Q 002900 114 DMTSKTDMYRANAIRVLCRI 133 (869)
Q Consensus 114 Dl~s~n~~vr~lALr~L~~I 133 (869)
-+-|..+.+|--|+.+||..
T Consensus 140 R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 140 RLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHhcchHHHHHHHHHHHHHH
Confidence 44455555555555555554
No 137
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=80.70 E-value=91 Score=37.07 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=78.7
Q ss_pred hhcCCCCHHHHhHHHHHhccCCC-------hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----H-H
Q 002900 113 KDMTSKTDMYRANAIRVLCRITD-------GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----R-W 179 (869)
Q Consensus 113 kDl~s~n~~vr~lALr~L~~I~~-------~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~-~ 179 (869)
+=+.+|.-.+.+.+|-++||+.- .-+....+.-+.+.+.++.+.+|++++-++.|+.=..-+..+ + .
T Consensus 426 qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~ 505 (678)
T KOG1293|consen 426 QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIP 505 (678)
T ss_pred HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 33467888999999999999642 223333566777778999999999999999998743333322 2 3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhh
Q 002900 180 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSL 220 (869)
Q Consensus 180 ~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l 220 (869)
.+.+.++.+|+++.|+-.++.+|-.+--+-+..+..++..+
T Consensus 506 a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 506 ANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 45667778899999999999998655444456777777654
No 138
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=78.48 E-value=1e+02 Score=34.80 Aligned_cols=74 Identities=16% Similarity=0.361 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHH--HHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH
Q 002900 346 RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSL--MNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN 421 (869)
Q Consensus 346 ~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~--v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~ 421 (869)
.+++-|..-....++.+|...+..++.++.+.|.-..++ +.++++.+.+ |.+...+.++..+..++. .|+.|.+
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd-~p~tR~y 183 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLD-SPRTRKY 183 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhC-Ccchhhh
Confidence 344444444455788899999999999999988754333 5666776664 666777777777777764 5766653
No 139
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.32 E-value=17 Score=32.07 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=57.1
Q ss_pred HHHHhcCCChHHHHHHHHHHhhhcccCh-H--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh-HHHHHHHhhc
Q 002900 146 LKQAIVDKNPVVASAALVSGIHLLQTTP-E--IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-AVSKLVTSLT 221 (869)
Q Consensus 146 i~~~l~d~~p~VRk~A~lal~~L~~~~p-e--~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~-~~~~li~~l~ 221 (869)
+...+.|+-|.||-.|+.-+.+|.+... . .+...+.-..+.+.|.|+-|=.+|+..|..+....+. .+..|+..|.
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~y~ 87 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDEYA 87 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHHh
Confidence 3445589999999999999999997655 2 2346777778889999998888888888888766555 4455555553
No 140
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=78.00 E-value=1.4e+02 Score=34.40 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHH------HHhhccCCCHHHHHHHHHHHHHHh
Q 002900 421 NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRY------IYNRVHLENATVRAAAVSTLAKFG 486 (869)
Q Consensus 421 ~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~------i~~~~~~e~~~vr~~~ltal~Kl~ 486 (869)
.+++.|++.++..+++...+.+++=+|||....+....++.. +.+-..-++++||-.+|.|.-|+-
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 577888888876677888888889999987765544444321 222223456667776666666653
No 141
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=2.1e+02 Score=36.53 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=60.4
Q ss_pred hhHHHHHhhcCCCccchhHHHHHHHHhCCCc-------c-----hhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCC---
Q 002900 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-------D-----EVIIVTSSLMKDMTSKTDMYRANAIRVLCRITD--- 135 (869)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~-------d-----~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~--- 135 (869)
-++++.-...++.+..|+.+-=.+......| + .+-...+.|.+-+. +-....-+|+|+-|++
T Consensus 139 ~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~---~a~~t~v~~~L~Ll~~~~~ 215 (1176)
T KOG1248|consen 139 ELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLG---SAENTTVLRSLMLLRDVLS 215 (1176)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhc---hHHHHHHHHHHHHHHHhhc
Confidence 3444544556777888887777665554311 1 12333344444433 2333334444444333
Q ss_pred ---hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChH
Q 002900 136 ---GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE 174 (869)
Q Consensus 136 ---~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe 174 (869)
...++.+.+.+......++.+|+-.+.-|+..+++..|+
T Consensus 216 ~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~ 257 (1176)
T KOG1248|consen 216 TFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPT 257 (1176)
T ss_pred cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCC
Confidence 346677777777777778888888888888888887776
No 142
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=77.66 E-value=14 Score=37.22 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=70.9
Q ss_pred chhHHHHHHHHhCCCc-chhHhhhhHHHh-hcCCCCHHHHhHHHHHhccCCC--------------------------hh
Q 002900 86 LRRMVYLMIKELSPSA-DEVIIVTSSLMK-DMTSKTDMYRANAIRVLCRITD--------------------------GT 137 (869)
Q Consensus 86 lKrl~Yl~l~~~~~~~-d~~~Lvinsl~k-Dl~s~n~~vr~lALr~L~~I~~--------------------------~~ 137 (869)
.||..|-||..+.|+. ..-.-..-+|.. =+.||++-+|+.|+.+++.+-+ ..
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~ 97 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLAS 97 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 3778888998888764 001111112222 2368999999999999987421 22
Q ss_pred hHHHHHHHHHHHhcC-CChHHHHHHHHHHhhhcc------cChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 002900 138 LLTQIERYLKQAIVD-KNPVVASAALVSGIHLLQ------TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 138 ~~~~l~~~i~~~l~d-~~p~VRk~A~lal~~L~~------~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~ 206 (869)
++-.+.+.+..++.+ +++-+-.-.+-|+.-|.. ..++++.+++..+...+.++|+.|..+++.++.-+.
T Consensus 98 ~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 98 MIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 334444555555544 234333333333333322 245777777777777777777777777777665543
No 143
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.73 E-value=2 Score=29.44 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.9
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccC
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRI 133 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I 133 (869)
.+.+.+-++|+++.+|-.|..+|+.|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999875
No 144
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.76 E-value=25 Score=42.59 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhc---CCcch
Q 002900 324 NRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE---GGFEY 400 (869)
Q Consensus 324 d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~---g~~~~ 400 (869)
...+|..=+|+|...|+...+..|.+.|.+ .+.+..-...+ +..+..--..-...+++.+.+++... ....+
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~---l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l 451 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQL---LASLPFHVRRPTEELLKELFELAKSPKVKNSPYL 451 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHH---HHHHHHT-----HHHHHHHHHHHT-HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHH---HHHHHhhcCCCCHHHHHHHHHHHhCccccCChhH
Confidence 345788888999999999999888888877 33443333333 33333321133346677777776542 22235
Q ss_pred HHHHHHHHHHHHHh--------------CCchHHHHHHHHHHhhhc---cCchhHHHHHHhhhcCCCCCCCChHHHHH-H
Q 002900 401 KKAIVDSIVILIRD--------------IPDAKENGLLHLCEFIED---CEFTYLSTQILHFLGTEGPKTSDPSKYIR-Y 462 (869)
Q Consensus 401 ~~~iv~~i~~ii~~--------------~p~~~~~~l~~L~~~l~~---~~~~~~~~~~l~ilGE~~~~~~~~~~~l~-~ 462 (869)
...++-.+-.++.+ .+...+..+..+.+.+.. ....+-+..++--||.-|.. .....+. +
T Consensus 452 ~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~~i~~l~~~ 529 (618)
T PF01347_consen 452 RETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--ESIPVLLPY 529 (618)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--GGHHHHHTT
T ss_pred HHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--hhhHHHHhH
Confidence 55555555555542 122333444444444442 12224444556677776643 2222222 2
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhcccc-CchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCC
Q 002900 463 IYNRVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDG 526 (869)
Q Consensus 463 i~~~~~~e~~~vr~~~ltal~Kl~~~~~-~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~~ 526 (869)
+.... ..+..+|.+++.|+-++...+| ..++.+..++.. ...+.|||=-| |+.|+...|
T Consensus 530 i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n--~~e~~EvRiaA--~~~lm~~~P 589 (618)
T PF01347_consen 530 IEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN--TTEDPEVRIAA--YLILMRCNP 589 (618)
T ss_dssp STTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH---TTS-HHHHHHH--HHHHHHT--
T ss_pred hhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC--CCCChhHHHHH--HHHHHhcCC
Confidence 22211 2367899999999999877666 344444444332 23357887655 566666644
No 145
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.32 E-value=41 Score=41.10 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=50.3
Q ss_pred hcCCCCHHHHhHHHHHhccCCC------hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH
Q 002900 114 DMTSKTDMYRANAIRVLCRITD------GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (869)
Q Consensus 114 Dl~s~n~~vr~lALr~L~~I~~------~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~ 177 (869)
-+.|+-+.+||-||+.|..... ..+-+-+.......+.|.++||-=.|+-++.-|...+|+-+-
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il 804 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL 804 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH
Confidence 3467788999999999998643 345566888889999999999999999877777766776443
No 146
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.28 E-value=1.3e+02 Score=32.94 Aligned_cols=254 Identities=15% Similarity=0.125 Sum_probs=125.2
Q ss_pred hcCChHHHHHHHHHHHhccCCChHhHh-hHHHHHHHHH--cCCCchhHHHHHHHhccccCC-CCCH--HHHHHHHHHhhc
Q 002900 264 RHKAEMVIFEAARAITELNGVTNRELT-PAITVLQLFL--SSSKPVLRFAAVRTLNKSLIS-DQNR--SIATLAITTLLK 337 (869)
Q Consensus 264 ~~~~~aV~~ea~~~i~~l~~~~~~~~~-~a~~~L~~~L--~s~~~n~ry~aL~~l~~~~L~-d~d~--sI~~~aL~lL~~ 337 (869)
.+.+..+++.+..++..+....+.++. .+..++..+| ++.+..+-.++++.+.+.|+. +-++ -+....+.+++.
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~ 196 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQ 196 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Confidence 456778999999999888655555553 3555555555 445556777777766554442 2222 145566666665
Q ss_pred cCChhhHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhC
Q 002900 338 TGNESSVDRLMKQITNFMS--DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDI 415 (869)
Q Consensus 338 l~~e~nv~~Il~eL~~y~~--~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~ 415 (869)
..|.+.=.+.++|+..-+. -.|++||...=.+=+. |..+.. .-++..|.+.+.-.-+-.+-.+....+..+..++
T Consensus 197 ~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~h-Ar~ia~--e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~ 273 (461)
T KOG4199|consen 197 VLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGH-ARTIAK--EGILTALTEALQAGIDPDSLVSLSTTLKALAVRD 273 (461)
T ss_pred HHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHH-HHHHHH--hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 5444444466777655322 1244444321111000 000000 0123333333332111112122223333333332
Q ss_pred CchH----HHHHHHHHHhhhccCchhHH---HHHHhhhcCCCCCCCCh--------HHHHHHHHhhccCCCHHHHHHHHH
Q 002900 416 PDAK----ENGLLHLCEFIEDCEFTYLS---TQILHFLGTEGPKTSDP--------SKYIRYIYNRVHLENATVRAAAVS 480 (869)
Q Consensus 416 p~~~----~~~l~~L~~~l~~~~~~~~~---~~~l~ilGE~~~~~~~~--------~~~l~~i~~~~~~e~~~vr~~~lt 480 (869)
.=++ ...+..|++.|.||...+.+ ..++.+|...+...+.. .+.+..+..++. .+|.|-.+.+-
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-~~p~Vi~~~~a 352 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-DDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-CChHHHHHHHH
Confidence 2111 24678899999998776544 33566665543332221 123333444444 47777777777
Q ss_pred HHHHHhccccCchHH-----HHHHHHHhhc-CC-CHHHHHHHHHHHHH
Q 002900 481 TLAKFGAMVDALKPR-----VFVLLRRCLY-DG-DDEVRDRATLYLNT 521 (869)
Q Consensus 481 al~Kl~~~~~~l~~~-----i~~ll~~~~~-d~-d~evrdRA~~yl~l 521 (869)
++.-+..+.|+-... ...+.-.++. .. ..-||..|+...+-
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRN 400 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRN 400 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 788888888752211 1222222222 22 35677777765443
No 147
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=75.22 E-value=45 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=39.3
Q ss_pred EEEEeC-CcEEEEEEeecCCCccccccEEEEEecCCcccceEEeecc-CCCCCCCCCceEEEEEecC
Q 002900 642 VKHIFD-RHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKP-LRSLPYDSPGQIFGAFEKP 706 (869)
Q Consensus 642 ~k~~~~-~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~-~~~L~~~~~~~~~v~~~~~ 706 (869)
.+..+. +.+.+.+...|..+ .+++||.+++..... +......+ -+.|+||++....+.+...
T Consensus 11 ~~~~~~~~~~~i~~~~~N~s~-~~it~f~~~~avpk~--~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 11 FKFERRPGLIRITLTFTNKSP-SPITNFSFQAAVPKS--LKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred EEEEcCCCeEEEEEEEEeCCC-CeeeeEEEEEEcccc--eEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 344443 45566666667664 589999999986543 55554433 3579999876555655543
No 148
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=74.04 E-value=1.6e+02 Score=33.23 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred hcCCCccchhHHHHHHHHhCC----------CcchhHhhhhHHHhhcCC-------CCHHHHhHHHHHhcc---------
Q 002900 79 FQSRDIGLRRMVYLMIKELSP----------SADEVIIVTSSLMKDMTS-------KTDMYRANAIRVLCR--------- 132 (869)
Q Consensus 79 ~~s~d~~lKrl~Yl~l~~~~~----------~~d~~~Lvinsl~kDl~s-------~n~~vr~lALr~L~~--------- 132 (869)
+++.+..-|.=+|+.+..... ..+.+-+.+..+++|+.+ .+..+...|||+|+-
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Q ss_pred -------------------------------------------CCChhhHHHHHHHHHHHhc-CCChHHHHHHHHHHhhh
Q 002900 133 -------------------------------------------ITDGTLLTQIERYLKQAIV-DKNPVVASAALVSGIHL 168 (869)
Q Consensus 133 -------------------------------------------I~~~~~~~~l~~~i~~~l~-d~~p~VRk~A~lal~~L 168 (869)
+.+.+.++.+...+...-. =++..|=.-++.++-++
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q ss_pred cccChHHHH----HHHHHHHHHhcCCChhHHHHHHHHHHHHh---hcChhHHHHHHHhhc--cCCC--------------
Q 002900 169 LQTTPEIVK----RWSNEVQEAVQSRAALVQFHALALLHQIR---QNDRLAVSKLVTSLT--RGTV-------------- 225 (869)
Q Consensus 169 ~~~~pe~v~----~~~~~l~~~l~d~~~~v~~~al~ll~~i~---~~d~~~~~~li~~l~--~~~~-------------- 225 (869)
...+|+.+. .|++.+...+.+....+...|+.++.++. ..+...-..+...+. ....
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi 241 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMI 241 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Q ss_pred ---CChhHHHHHHHHHHHhhhhh-cCCCCCchhhHHHHHHHHhcCChHHHHHHHHH
Q 002900 226 ---RSPLAQCLLIRYTTQVIREA-ATTQTGDRPFYDFLESCLRHKAEMVIFEAARA 277 (869)
Q Consensus 226 ---~~~~~~v~llr~l~~~~~~~-~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~ 277 (869)
...-...++|-.+..+++.. ...-+.....+.+.+.+.+++++++..+|..+
T Consensus 242 ~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 242 KSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred hCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
No 149
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=73.70 E-value=12 Score=31.74 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=31.4
Q ss_pred cEEEEEEeecCCCccccccEEEEEecCCcccceEE-eeccCCCCCCCCCceEEEEEecCC
Q 002900 649 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEV-ASKPLRSLPYDSPGQIFGAFEKPE 707 (869)
Q Consensus 649 ~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~-~~i~~~~L~~~~~~~~~v~~~~~~ 707 (869)
.+-+.+.++|+. +..+.|+++.+...+ +|+.. ....+..|+||++..+.+.+..+.
T Consensus 6 ~~~~~~tv~N~g-~~~~~~v~~~l~~P~--GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 6 TVTVTLTVTNTG-TAPLTNVSLSLSLPE--GWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEE--S-SS-BSS-EEEEE--T--TSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred EEEEEEEEEECC-CCceeeEEEEEeCCC--CccccCCccccccCCCCCEEEEEEEEECCC
Confidence 466788899987 457899999988654 48822 122344899999877776665553
No 150
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.61 E-value=62 Score=39.56 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHh---hccCChhhHH-----HHHHHHHHhhh-hccHHHHHHHHHHHHHHHhhCCccHHHHHH------H
Q 002900 323 QNRSIATLAITTL---LKTGNESSVD-----RLMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMN------F 387 (869)
Q Consensus 323 ~d~sI~~~aL~lL---~~l~~e~nv~-----~Il~eL~~y~~-~~~~~~r~~~v~aI~~la~k~~~~~~~~v~------~ 387 (869)
.|+++...||.=| +.|+||+.+. .++.-|...++ +.+.++.--+.+++..+|+-+|+....+|+ +
T Consensus 180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl 259 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVL 259 (1051)
T ss_pred CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHH
Confidence 3666666666544 4568887654 33443333333 567789999999999999999998887777 3
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHhCCc--hHHHHHHHHHHhhhccCchhHHHHHHhhhcCC
Q 002900 388 LSNILREEGGFEYKKAIVDSIVILIRDIPD--AKENGLLHLCEFIEDCEFTYLSTQILHFLGTE 449 (869)
Q Consensus 388 ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~--~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~ 449 (869)
+-+++..+- .++.+.....+..|-+.+|- ++..++...+.||+=. ...+.+.++-+....
T Consensus 260 ~~kL~~Iey-iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 260 LEKLLTIEY-IDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANC 321 (1051)
T ss_pred HHhhhhhhh-hHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 444555443 35778888899998888884 3556666666666531 123334444444443
No 151
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=72.62 E-value=1.8e+02 Score=33.27 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=107.8
Q ss_pred CCCCCHHHHHHHHHHhhccCCh----hhHHHHHHHHHHhh-hhccHHHHHHHHHHH----HHHHhhCCccHHHHHHHHHH
Q 002900 320 ISDQNRSIATLAITTLLKTGNE----SSVDRLMKQITNFM-SDIADEFKIVVVEAI----RSLCLKFPLKYRSLMNFLSN 390 (869)
Q Consensus 320 L~d~d~sI~~~aL~lL~~l~~e----~nv~~Il~eL~~y~-~~~~~~~r~~~v~aI----~~la~k~~~~~~~~v~~ll~ 390 (869)
++..+..+|.-++.++..++|. +.++.+++.+.... ...+..-+...+..+ ..+..|+.+....+++.+++
T Consensus 199 ~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~ 278 (415)
T PF12460_consen 199 LSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLE 278 (415)
T ss_pred HcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4455567888888877777665 34556666555544 222333344443333 34556888888888899999
Q ss_pred HHhhcCCcchHHHHHHHHHHHHHhCCch-----------------HHHHHHHHHHhhhccCc---hhHHHHHHhhhcCCC
Q 002900 391 ILREEGGFEYKKAIVDSIVILIRDIPDA-----------------KENGLLHLCEFIEDCEF---TYLSTQILHFLGTEG 450 (869)
Q Consensus 391 ll~~~g~~~~~~~iv~~i~~ii~~~p~~-----------------~~~~l~~L~~~l~~~~~---~~~~~~~l~ilGE~~ 450 (869)
+|.+. .++..+...+.-++...++. ...++..|.+.++.... +....+..+++. +.
T Consensus 279 lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~-~v 354 (415)
T PF12460_consen 279 LLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLK-NV 354 (415)
T ss_pred HhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHh-hC
Confidence 98863 24555555555555542322 23466666666665332 223445566665 33
Q ss_pred CC---CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccC-chHHHHHHHHHh
Q 002900 451 PK---TSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDA-LKPRVFVLLRRC 503 (869)
Q Consensus 451 ~~---~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~-l~~~i~~ll~~~ 503 (869)
|. ..+-.+++..+...+..+++.++.+.+.++.-+....|+ +.+.+..++.+.
T Consensus 355 P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 355 PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 32 134456677777878888999999999998888776653 333444444433
No 152
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.68 E-value=3.3e+02 Score=35.80 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHH----HHhhhcCCCCCCC-
Q 002900 382 RSLMNFLSNILREEG--GFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQ----ILHFLGTEGPKTS- 454 (869)
Q Consensus 382 ~~~v~~ll~ll~~~g--~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~----~l~ilGE~~~~~~- 454 (869)
..+-+|+...+.... ....+....+.|.++.+-.|++--.++.+|-.-+-. +....+.. +.-+++.++....
T Consensus 218 ~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~s-e~~~~Rl~a~~lvg~~~~~~~~~l~~ 296 (1266)
T KOG1525|consen 218 DTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLS-EQEEVRLKAVKLVGRMFSDKDSQLSE 296 (1266)
T ss_pred hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhcchhhhcc
Confidence 345566666555322 123456677888888888888888888888766643 22333333 3344555544433
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHH
Q 002900 455 DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRD 513 (869)
Q Consensus 455 ~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrd 513 (869)
.-...+..+..|+..-++.||...+....-+....|+........+..+..|.|+++|-
T Consensus 297 ~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~ri 355 (1266)
T KOG1525|consen 297 TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRV 355 (1266)
T ss_pred cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhh
Confidence 23456777888899889999999888777666666654444444444444444444443
No 153
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=71.57 E-value=6.4 Score=39.82 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=54.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhh
Q 002900 144 RYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSL 220 (869)
Q Consensus 144 ~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l 220 (869)
+.+.+.+.+.++++||.|..++.+.+... .-...++..+..++.|.+.-|+-+.--+|.++...++..+...+...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~-~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE-TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 56677778889999999988888877641 12334555566666777777777777778888887877777766644
No 154
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.19 E-value=7.7 Score=36.18 Aligned_cols=47 Identities=19% Similarity=0.102 Sum_probs=39.3
Q ss_pred ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHH
Q 002900 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN 181 (869)
Q Consensus 135 ~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~ 181 (869)
++..+..++.++.+-|.|++|+|+.||+-.+-++...-++...+|+.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~ 78 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQ 78 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHH
Confidence 45567888999999999999999999999999998877766666664
No 155
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.42 E-value=1.1e+02 Score=30.75 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=66.7
Q ss_pred HHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhc-cCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHH
Q 002900 185 EAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCL 263 (869)
Q Consensus 185 ~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~-~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L 263 (869)
-++.|.++.|..+|+.++..+-.+- ..+-....+.. ....+.++.. .+=..+. .+.+.|...|
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae~~~~~~~sFtslS~-tLa~~i~--------------~lH~~Ll~~L 110 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGS-KPFLAQAEESKGPSGSFTSLSS-TLASMIM--------------ELHRGLLLAL 110 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHHhcCCCCCCcccHHH-HHHHHHH--------------HHHHHHHHHH
Confidence 3457888899999988887776542 33333333332 1113444432 1111111 1223344444
Q ss_pred hc-CChHHHHHHHHHHHhccC------CChHhHhhHHHHHHHHHcCCCchhHHHHHHHh
Q 002900 264 RH-KAEMVIFEAARAITELNG------VTNRELTPAITVLQLFLSSSKPVLRFAAVRTL 315 (869)
Q Consensus 264 ~~-~~~aV~~ea~~~i~~l~~------~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l 315 (869)
++ ++..++-+..|++-.+-. -+..++...+..+..++.+.|++++-+++-.+
T Consensus 111 ~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 111 QAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCL 169 (182)
T ss_pred hcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 43 566677777777654421 13467778888899999999999998877665
No 156
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=68.86 E-value=71 Score=32.06 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=55.4
Q ss_pred cCCCCHHHHhHHHHHhccCCCh-hhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 115 MTSKTDMYRANAIRVLCRITDG-TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 115 l~s~n~~vr~lALr~L~~I~~~-~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
+.|+|+..|-.|+-++...... .-.+.+...+..++.|.+.||||+.+-++-.++..+|+.+.+++.+...
T Consensus 114 ~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~~ 185 (197)
T cd06561 114 AKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNGL 185 (197)
T ss_pred HhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 3577887777777666664333 5677788888888888999999999999999998999988888876544
No 157
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=68.33 E-value=1.9e+02 Score=31.74 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=85.1
Q ss_pred hccHHHHHHHHHHHHHHHhh-CCc-----cHHHHHHHHHHHHhhcCCcchHHHHH--HHHHHHH-H-----hCCchHHHH
Q 002900 357 DIADEFKIVVVEAIRSLCLK-FPL-----KYRSLMNFLSNILREEGGFEYKKAIV--DSIVILI-R-----DIPDAKENG 422 (869)
Q Consensus 357 ~~~~~~r~~~v~aI~~la~k-~~~-----~~~~~v~~ll~ll~~~g~~~~~~~iv--~~i~~ii-~-----~~p~~~~~~ 422 (869)
+....-|...+.+|..+... |.. ....+++.+.+.++.+.+ ++..+ ..+.-+. + ...++.+.+
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~---~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS---EEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 34456677777777666543 221 122334445555543222 12111 1111111 1 123445566
Q ss_pred HHHHHHhhhccC-chhHHHHHHhhhcCC----CCCCCChH---HHHHHHHhhcc------------CCCHHHHHHHHHHH
Q 002900 423 LLHLCEFIEDCE-FTYLSTQILHFLGTE----GPKTSDPS---KYIRYIYNRVH------------LENATVRAAAVSTL 482 (869)
Q Consensus 423 l~~L~~~l~~~~-~~~~~~~~l~ilGE~----~~~~~~~~---~~l~~i~~~~~------------~e~~~vr~~~ltal 482 (869)
...|...+.|.. .+.++..++..||=. +....+.. +.+..++.... .+++.+.+++|.+-
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 667777776643 233433333222221 11112233 45554433211 12357889999998
Q ss_pred HHHhccccC--chH---HHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 002900 483 AKFGAMVDA--LKP---RVFVLLRRCLYDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 483 ~Kl~~~~~~--l~~---~i~~ll~~~~~d~d~evrdRA~~yl~ll 522 (869)
+-+....|. +.. .....|...+.+.|.+||--|-+.+.++
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 888887763 332 3445566677888999999999988887
No 158
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.86 E-value=16 Score=41.24 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=46.7
Q ss_pred hhhhHHHhhcC---CCCHHHHhHHHHHhccC---CChhhHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 002900 106 IVTSSLMKDMT---SKTDMYRANAIRVLCRI---TDGTLLTQIERYLKQAIVDKNPVVASAALVSG 165 (869)
Q Consensus 106 Lvinsl~kDl~---s~n~~vr~lALr~L~~I---~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal 165 (869)
...+.+.-||+ +..|..||-|++++... .+++....+.+.+.++|.+++..|+.-||.|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 34555556666 67899999999999864 45778888999999999999999999999985
No 159
>COG1470 Predicted membrane protein [Function unknown]
Probab=67.61 E-value=16 Score=41.46 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=47.4
Q ss_pred CcEEEEEEeecCCCccccccEEEEEecCCcccceEEe-eccCCCCCCCCCceEEEEEecCCCC
Q 002900 648 RHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVA-SKPLRSLPYDSPGQIFGAFEKPEGV 709 (869)
Q Consensus 648 ~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~-~i~~~~L~~~~~~~~~v~~~~~~~~ 709 (869)
....+...|.|+. +.+|+||.+.++...+ |+++. .-.|+.|+||+...+.+.++.|.+.
T Consensus 397 ee~~i~i~I~NsG-na~LtdIkl~v~~Pqg--Wei~Vd~~~I~sL~pge~~tV~ltI~vP~~a 456 (513)
T COG1470 397 EEKTIRISIENSG-NAPLTDIKLTVNGPQG--WEIEVDESTIPSLEPGESKTVSLTITVPEDA 456 (513)
T ss_pred ccceEEEEEEecC-CCccceeeEEecCCcc--ceEEECcccccccCCCCcceEEEEEEcCCCC
Confidence 3667788899998 5699999999986554 88764 3478999999999999988887543
No 160
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=67.33 E-value=16 Score=43.53 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHhhhc
Q 002900 139 LTQIERYLKQAIVDKNPVVASAALVSGIHLL 169 (869)
Q Consensus 139 ~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~ 169 (869)
-..+.+.+..++.|++|.+|-.++.++..|.
T Consensus 367 ~d~I~phv~~G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 367 NDQIFPHVALGFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred cchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555443
No 161
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=66.58 E-value=10 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHhHHHHHhccCCChhhHHHHHHHHH
Q 002900 122 YRANAIRVLCRITDGTLLTQIERYLK 147 (869)
Q Consensus 122 vr~lALr~L~~I~~~~~~~~l~~~i~ 147 (869)
+|..|.++|+.|++++-++.|...++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 57788888888888887777766653
No 162
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.32 E-value=6.6 Score=36.39 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHH------HHHhhccCCCHHHHHHHHHHHHHHh
Q 002900 421 NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIR------YIYNRVHLENATVRAAAVSTLAKFG 486 (869)
Q Consensus 421 ~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~------~i~~~~~~e~~~vr~~~ltal~Kl~ 486 (869)
.++..|++.++...++...+.+++=||||....++...++. .+.+-+.-++++||-.+|.|+-|+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35566666676556677777778888887665544433332 2223233456777777777666653
No 163
>PF14961 BROMI: Broad-minded protein
Probab=66.18 E-value=1.6e+02 Score=37.71 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccCC-CHHHHHHHHHHHHHHhccc---cCchHHHHHHHHHhhcCCCHHHHHHHH-HHHHHhCCCC
Q 002900 457 SKYIRYIYNRVHLE-NATVRAAAVSTLAKFGAMV---DALKPRVFVLLRRCLYDGDDEVRDRAT-LYLNTVGSDG 526 (869)
Q Consensus 457 ~~~l~~i~~~~~~e-~~~vr~~~ltal~Kl~~~~---~~l~~~i~~ll~~~~~d~d~evrdRA~-~yl~ll~~~~ 526 (869)
.+.+..|.+++... +-+||..++..|.|+-... .|.-+.+.+=|..++.|.|.++.+++. +|.++++..+
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 45667888887765 4589999999999874421 144567778888889999999999998 5777776654
No 164
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=66.11 E-value=8 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Q 002900 140 TQIERYLKQAIVDKNPVVASAALV 163 (869)
Q Consensus 140 ~~l~~~i~~~l~d~~p~VRk~A~l 163 (869)
+.+...|.+.+.|++|.||++|+-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 367888899999999999999874
No 165
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.91 E-value=47 Score=38.65 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=53.3
Q ss_pred HhhcCCCCHHHHhHHHHHhc--cC--CChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHh
Q 002900 112 MKDMTSKTDMYRANAIRVLC--RI--TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (869)
Q Consensus 112 ~kDl~s~n~~vr~lALr~L~--~I--~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l 187 (869)
.+-+.|.++..|....=+++ -. +....+..+.+. +++|.+..|||+|++|+.-++-++|+.+...++-+.+
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~-- 596 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSE-- 596 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhh--
Confidence 34445666777744333222 12 222233333333 3488888999999999888888888877655543332
Q ss_pred cCCChhHHHHHHHHHHHHhhc
Q 002900 188 QSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 188 ~d~~~~v~~~al~ll~~i~~~ 208 (869)
+-|+.|.+....+|.-.|.+
T Consensus 597 -shN~hVR~g~AvaLGiacag 616 (926)
T COG5116 597 -SHNFHVRAGVAVALGIACAG 616 (926)
T ss_pred -ccchhhhhhhHHHhhhhhcC
Confidence 44677776665555555544
No 166
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=64.96 E-value=62 Score=38.47 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=72.5
Q ss_pred HHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHH
Q 002900 120 DMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHAL 199 (869)
Q Consensus 120 ~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al 199 (869)
+-+-|.||-+|+.=.+.+|. .+.+-..+.-.+|.+||..-+|+.=|+..+|.+ +.++.+.....|.|+.|.++|+
T Consensus 622 ~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~naI 696 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNAI 696 (878)
T ss_pred chhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHHH
Confidence 56778888888875555554 445555567789999999999999999999986 5777888888899999999999
Q ss_pred HHHHHHhhcCh-hHHHHHHHhh
Q 002900 200 ALLHQIRQNDR-LAVSKLVTSL 220 (869)
Q Consensus 200 ~ll~~i~~~d~-~~~~~li~~l 220 (869)
..+..|..... ..+.+++.++
T Consensus 697 famGLiGAGTnNARla~mLrql 718 (878)
T KOG2005|consen 697 FAMGLIGAGTNNARLAQMLRQL 718 (878)
T ss_pred HHhccccCCcchHHHHHHHHHH
Confidence 99888865421 2245555543
No 167
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=64.93 E-value=16 Score=41.40 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=82.6
Q ss_pred cCCCccchhHHHHHHHHhCCCcchhHhhhhHH-HhhcCCCCHHHHhHHHHHhccCCCh----------------------
Q 002900 80 QSRDIGLRRMVYLMIKELSPSADEVIIVTSSL-MKDMTSKTDMYRANAIRVLCRITDG---------------------- 136 (869)
Q Consensus 80 ~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl-~kDl~s~n~~vr~lALr~L~~I~~~---------------------- 136 (869)
+..+.-.||..|=||..+.+..++. -+-+| .--|+|+|+.-|++||..++.|-..
T Consensus 22 ~~~~~~~~~~~ygyw~~~~pd~~~~--g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~ 99 (728)
T KOG4535|consen 22 STIKSIEKKVLYGYWSAFIPDTPEL--GSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVM 99 (728)
T ss_pred HHHhhhhhhhhhceeeeecCCCCCC--CCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHH
Confidence 3456677999999998888752221 11111 1247899999999999998875311
Q ss_pred --hhHHHHHHHHHHHhc-CCChHHHHHHHHHHhhhcccCh------HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhh
Q 002900 137 --TLLTQIERYLKQAIV-DKNPVVASAALVSGIHLLQTTP------EIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (869)
Q Consensus 137 --~~~~~l~~~i~~~l~-d~~p~VRk~A~lal~~L~~~~p------e~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~ 207 (869)
.-+..+.+.+.-.+. ..+|-|---.+-|+..|....| ..+.++.+.+...+..+|+.|..+++.++..|..
T Consensus 100 ~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 100 IACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 111223333333333 3445555566667777776555 3345788999999999999999999988877754
No 168
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=64.75 E-value=42 Score=32.04 Aligned_cols=86 Identities=17% Similarity=0.071 Sum_probs=49.8
Q ss_pred cCCCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC---CChhhHHH-----HHHHHHHHh
Q 002900 80 QSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLLTQ-----IERYLKQAI 150 (869)
Q Consensus 80 ~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I---~~~~~~~~-----l~~~i~~~l 150 (869)
+....+.---.-+-++..... ++..--++..|+|-|.++||.++-+||..|-.+ +++.+... +...+.+.+
T Consensus 15 s~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~ 94 (140)
T PF00790_consen 15 SESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLI 94 (140)
T ss_dssp -TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHH
Confidence 333333333334455555444 556788999999999999999999998877542 12222222 344445544
Q ss_pred cCCC--hH--HHHHHHHHH
Q 002900 151 VDKN--PV--VASAALVSG 165 (869)
Q Consensus 151 ~d~~--p~--VRk~A~lal 165 (869)
.++. +. ||++++-.+
T Consensus 95 ~~~~~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 95 KSKKTDPETPVKEKILELL 113 (140)
T ss_dssp HHTTTHHHSHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHH
Confidence 4322 22 888876543
No 169
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.50 E-value=72 Score=30.74 Aligned_cols=115 Identities=14% Similarity=0.208 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHH
Q 002900 266 KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVD 345 (869)
Q Consensus 266 ~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~ 345 (869)
-+-+..++.+-.|-.-. ..+. .|+..|.+=|.++++++.+.||..+-. |.+. .--.....+++.
T Consensus 16 ~dw~~il~icD~I~~~~-~~~k---~a~ral~KRl~~~n~~v~l~AL~LLe~-~vkN-------CG~~fh~evask---- 79 (144)
T cd03568 16 ENWGLILDVCDKVKSDE-NGAK---DCLKAIMKRLNHKDPNVQLRALTLLDA-CAEN-------CGKRFHQEVASR---- 79 (144)
T ss_pred cCHHHHHHHHHHHhcCC-ccHH---HHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHH-------CCHHHHHHHhhH----
Confidence 34455555555554321 1222 456666666677777777766665421 1111 111111112222
Q ss_pred HHHHHHHHhhhh-ccHHHHHHHHHHHHHHHhhCCccHH-HHHHHHHHHHhhcC
Q 002900 346 RLMKQITNFMSD-IADEFKIVVVEAIRSLCLKFPLKYR-SLMNFLSNILREEG 396 (869)
Q Consensus 346 ~Il~eL~~y~~~-~~~~~r~~~v~aI~~la~k~~~~~~-~~v~~ll~ll~~~g 396 (869)
..+++|.+.+.. .+.+.+..+..-|..|+..|+.+.+ .++.-+.+.|+.+|
T Consensus 80 ~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 132 (144)
T cd03568 80 DFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEG 132 (144)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcC
Confidence 344455554444 6788999999999999999985432 23334444455444
No 170
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=64.19 E-value=2.3e+02 Score=31.13 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=38.5
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccC--------CChhhHHHHHHHHHHHhcCCC--hHHHHHHHHHHh
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRI--------TDGTLLTQIERYLKQAIVDKN--PVVASAALVSGI 166 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I--------~~~~~~~~l~~~i~~~l~d~~--p~VRk~A~lal~ 166 (869)
++.++.|-++.....-+.+|+|+++-+ ...++.+.+.+.+++.+.|.+ +-+|-+++.|+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLa 156 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALA 156 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 345555556555555667777765532 246688899999999999865 445555544444
No 171
>PF05536 Neurochondrin: Neurochondrin
Probab=63.53 E-value=2e+02 Score=34.32 Aligned_cols=30 Identities=7% Similarity=-0.030 Sum_probs=15.6
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHhccc
Q 002900 460 IRYIYNRVHLENATVRAAAVSTLAKFGAMV 489 (869)
Q Consensus 460 l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~ 489 (869)
+..+.+.|.......|..++.-+..+..+.
T Consensus 186 l~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 186 LPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 344444444444445555566666665554
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.24 E-value=15 Score=34.01 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=37.6
Q ss_pred hhhHHHhhc-CCCCHHHHhHHHHHhccCC-----ChhhHHH--HHHHHHHHhcCCChHHHHHHHHHHhhhc
Q 002900 107 VTSSLMKDM-TSKTDMYRANAIRVLCRIT-----DGTLLTQ--IERYLKQAIVDKNPVVASAALVSGIHLL 169 (869)
Q Consensus 107 vinsl~kDl-~s~n~~vr~lALr~L~~I~-----~~~~~~~--l~~~i~~~l~d~~p~VRk~A~lal~~L~ 169 (869)
++..|.+=| ++.|+...|.|+.=|+.+. +..+++. .-..|.+++.|.+|-||+.|+.|+-++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333444444 3445666666666665432 2334443 2456777788888888888888887765
No 173
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.33 E-value=27 Score=34.48 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=67.3
Q ss_pred chhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCc-chhH-----hhhhHHHhhcCCC-CHHHHhHHHHHhccCC-----
Q 002900 67 EATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-DEVI-----IVTSSLMKDMTSK-TDMYRANAIRVLCRIT----- 134 (869)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~-d~~~-----Lvinsl~kDl~s~-n~~vr~lALr~L~~I~----- 134 (869)
+...+..-+.++++|++..-|-.|.-.++...... -+.+ -=...+.+=|+.+ .+.+...|+++|..|-
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45555666777788888888888887776555442 2221 1122333333333 3467778888887642
Q ss_pred Chhh--------HHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHH
Q 002900 135 DGTL--------LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (869)
Q Consensus 135 ~~~~--------~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~ 186 (869)
-|++ ++.+...+.+.+.+ +++...|+-++..+.+.+|...+.+.+++..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESA 159 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHH
Confidence 1222 12223333333333 56666777777777777777777666666554
No 174
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.09 E-value=3.9e+02 Score=33.15 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=102.4
Q ss_pred hhhHHHhhcCCC-CHHHHhHHHHHhcc---CCChh-----hHHHHHHHHHHHhcCC-ChHHHHHHHHHHhhhcccChHHH
Q 002900 107 VTSSLMKDMTSK-TDMYRANAIRVLCR---ITDGT-----LLTQIERYLKQAIVDK-NPVVASAALVSGIHLLQTTPEIV 176 (869)
Q Consensus 107 vinsl~kDl~s~-n~~vr~lALr~L~~---I~~~~-----~~~~l~~~i~~~l~d~-~p~VRk~A~lal~~L~~~~pe~v 176 (869)
=.+.|..-|+.. +|..+=-||.-||. +++++ .++.+.+.+.++|.|. ++.+---|+-|+..|+...|.-+
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 345555566555 88888889998886 44444 3677899999999985 68899999999999998877533
Q ss_pred H---------HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH------HHHhhccCCCCChhHHHHHHHHHHHh
Q 002900 177 K---------RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK------LVTSLTRGTVRSPLAQCLLIRYTTQV 241 (869)
Q Consensus 177 ~---------~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~------li~~l~~~~~~~~~~~v~llr~l~~~ 241 (869)
. -++.+++..= ---|.-.++.+|..|.+..+.++-+ .+.-+. .++--+|-..|-++...
T Consensus 248 a~vV~~~aIPvl~~kL~~Ie---yiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylD---FFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIE---YIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLD---FFSIHAQRVALAIAANC 321 (1051)
T ss_pred heeecccchHHHHHhhhhhh---hhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 2 2334333321 1235556777777777665555432 111111 23344555555555432
Q ss_pred hhhh-cCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 242 IREA-ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 242 ~~~~-~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
...- +.++...-+-++.|.++|++.+.-++-.++-+++.+
T Consensus 322 Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred HhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 1110 123333445567888899887765555555555544
No 175
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=61.82 E-value=1.3e+02 Score=34.45 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=75.0
Q ss_pred HhhHHHHHHHHHcCCCchh--HHHHHHHhcc--ccCCCCCHHHHHHHHHHhhccC-----ChhhHH-HHHHHHHHhhhhc
Q 002900 289 LTPAITVLQLFLSSSKPVL--RFAAVRTLNK--SLISDQNRSIATLAITTLLKTG-----NESSVD-RLMKQITNFMSDI 358 (869)
Q Consensus 289 ~~~a~~~L~~~L~s~~~n~--ry~aL~~l~~--~~L~d~d~sI~~~aL~lL~~l~-----~e~nv~-~Il~eL~~y~~~~ 358 (869)
+..+...|.+|+.+++... +|.--+-+.+ .+++.+|+.=|....++|-++- -..-+. .|.+.+.+|+.+.
T Consensus 107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCc
Confidence 4456677778877765422 1111111111 5677788766666666665532 222222 3444666676655
Q ss_pred cHHH-HHHHHHHHHHHHhhCCc-cHHHHH----HHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhh
Q 002900 359 ADEF-KIVVVEAIRSLCLKFPL-KYRSLM----NFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIE 431 (869)
Q Consensus 359 ~~~~-r~~~v~aI~~la~k~~~-~~~~~v----~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~ 431 (869)
..-+ -.++++-++.+...|+. -.+... ..++.+.+...-..+.......+.+.+.++|.+-..++..+..+-.
T Consensus 187 ~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP 265 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWP 265 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-
T ss_pred ccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCC
Confidence 4433 45677777777777662 222222 3344555544434456777777777777777777766666666543
No 176
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=61.63 E-value=1.5e+02 Score=36.87 Aligned_cols=200 Identities=16% Similarity=0.167 Sum_probs=131.1
Q ss_pred CCccchhhhHHHH----Hh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhh-cCCCccchhHHHHH
Q 002900 20 PFLGIEKGAVLQE----AR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLF-QSRDIGLRRMVYLM 93 (869)
Q Consensus 20 ~~~~~~k~~~~qe----~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~-~s~d~~lKrl~Yl~ 93 (869)
.|.-..+.+++.. +- .+.++ +-+.+.+++..++-.+..-..-.....+.+....+|.. ...|...-.+.-.+
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~--~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~ 318 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSK--KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQI 318 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhcc--chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHH
Confidence 3544555555442 21 23333 33444777888888776532111222333333333433 44555555555555
Q ss_pred HHHhCCC-----cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhh
Q 002900 94 IKELSPS-----ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHL 168 (869)
Q Consensus 94 l~~~~~~-----~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L 168 (869)
+..++.. .+.+..+.+.|..=+.+.....|-.++.++=.+....-...+.+.|..++.+++|-+|--...-+-+.
T Consensus 319 l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 319 LELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred HHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 5555542 45678999999999999999999888877777777667788899999999999999998877777666
Q ss_pred cccCh------HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc-ChhHHHHHHHhhc
Q 002900 169 LQTTP------EIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLAVSKLVTSLT 221 (869)
Q Consensus 169 ~~~~p------e~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~-d~~~~~~li~~l~ 221 (869)
++... +.++..++.+....+|++.-|.-+|+..+..+-+. .-..+.+++..+.
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 65443 45668888899999999998888887776655432 2234666666554
No 177
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=61.58 E-value=1.2e+02 Score=36.43 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHH
Q 002900 471 NATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEV 511 (869)
Q Consensus 471 ~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~ev 511 (869)
+..+....+..+.++..-+|+++..|..++-..+-..|.|+
T Consensus 177 ~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~iDVei 217 (563)
T PF05327_consen 177 SKDEHVNYVRNLLRLTEYCPELRSDILSLIIERLIKIDVEI 217 (563)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455555666666567766665555544444344443
No 178
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=4.5e+02 Score=33.52 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh-HHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHhh
Q 002900 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-EIVKRWSNEVQEAVQSRA-ALVQFHALALLHQIRQ 207 (869)
Q Consensus 136 ~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p-e~v~~~~~~l~~~l~d~~-~~v~~~al~ll~~i~~ 207 (869)
|++++.++..+..+++|+...||-.||-++.|+....| +++...+..+.++++--+ +.+--.|.-+|.++..
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999987655 555666666666554333 2333333334555543
No 179
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.75 E-value=3.9e+02 Score=36.20 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=65.6
Q ss_pred hHhhhhHHHhhcCCCCHHHHhHHHHHhcc----CCChhhHHHHHHHHHHHhcCC-ChHHHHHHHHHHhhhcccChHH---
Q 002900 104 VIIVTSSLMKDMTSKTDMYRANAIRVLCR----ITDGTLLTQIERYLKQAIVDK-NPVVASAALVSGIHLLQTTPEI--- 175 (869)
Q Consensus 104 ~~Lvinsl~kDl~s~n~~vr~lALr~L~~----I~~~~~~~~l~~~i~~~l~d~-~p~VRk~A~lal~~L~~~~pe~--- 175 (869)
-.+..--+..++..+||..||-|-.+++. ...+-++-.+.+...+.+.+. .|+-|---.++++.+.+..-..
T Consensus 874 ~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 874 RSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 35666677788999999999998887776 344555566666666666665 5555555555666665433222
Q ss_pred --HHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHh
Q 002900 176 --VKRWSNEVQEAVQSRA-ALVQFHALALLHQIR 206 (869)
Q Consensus 176 --v~~~~~~l~~~l~d~~-~~v~~~al~ll~~i~ 206 (869)
...-+..+..+-.|+. |.|+..++..+..+.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~ 987 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALIL 987 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHH
Confidence 2233345555555655 488888887776554
No 180
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.50 E-value=1.2e+02 Score=29.21 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHH
Q 002900 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDR 346 (869)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~ 346 (869)
+-+..+|.+..|-.-.. .+ ..|+..|.+=|.++++++.+.||..+.. | ++..--..-..+++. .
T Consensus 21 dw~~ileicD~In~~~~-~~---k~a~ral~krl~~~n~~vql~AL~LLe~-~-------vkNCG~~fh~evas~----~ 84 (142)
T cd03569 21 DLASILEICDMIRSKDV-QP---KYAMRALKKRLLSKNPNVQLYALLLLES-C-------VKNCGTHFHDEVASR----E 84 (142)
T ss_pred CHHHHHHHHHHHhCCCC-CH---HHHHHHHHHHHcCCChHHHHHHHHHHHH-H-------HHHCCHHHHHHHhhH----H
Confidence 44455555555532211 12 2466666666677777777776655421 0 111000011111222 3
Q ss_pred HHHHHHHhhh-hccHHHHHHHHHHHHHHHhhCCc--cHHHHHHHHHHHHhhcC
Q 002900 347 LMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPL--KYRSLMNFLSNILREEG 396 (869)
Q Consensus 347 Il~eL~~y~~-~~~~~~r~~~v~aI~~la~k~~~--~~~~~v~~ll~ll~~~g 396 (869)
.+++|...+. ..+...|..++.-|..|+..|+. .+..+.+..-. |+..|
T Consensus 85 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~-L~~~G 136 (142)
T cd03569 85 FMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQI-LKAEG 136 (142)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH-HHHcC
Confidence 3344444332 45678999999999999998875 44455554444 44343
No 181
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=57.92 E-value=3.8e+02 Score=31.69 Aligned_cols=86 Identities=10% Similarity=0.162 Sum_probs=60.4
Q ss_pred HhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChH-----HHHHHHHHHHHHhcCCChhHHHH
Q 002900 123 RANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-----IVKRWSNEVQEAVQSRAALVQFH 197 (869)
Q Consensus 123 r~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe-----~v~~~~~~l~~~l~d~~~~v~~~ 197 (869)
-+.-|...+...+..|.+++...|.+.+...+..=|-.|++|...+.+.-.+ ++.+.++.+....+|..--|-..
T Consensus 348 A~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~t 427 (858)
T COG5215 348 ASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKST 427 (858)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence 3555777788889999999999999999999999999999999988753222 23355556656666554444433
Q ss_pred HHHHHHHHhhc
Q 002900 198 ALALLHQIRQN 208 (869)
Q Consensus 198 al~ll~~i~~~ 208 (869)
+.-.++.|..+
T Consensus 428 tAwc~g~iad~ 438 (858)
T COG5215 428 TAWCFGAIADH 438 (858)
T ss_pred HHHHHHHHHHH
Confidence 33335666544
No 182
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=57.54 E-value=1.8e+02 Score=27.75 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=43.2
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHH--HHHHHHH
Q 002900 291 PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADE--FKIVVVE 368 (869)
Q Consensus 291 ~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~--~r~~~v~ 368 (869)
.|+..|.+=|.+++|++.+.||..+. .-++.--=.+...+++.+-++.+.+-+..- ..+.. .|..++.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld--------~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~--~~~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLD--------ALVKNCGPRFHREVASKEFLDELVKLIKSK--KTDPETPVKEKILE 111 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHH--------HHHHHSHHHHHHHHTSHHHHHHHHHHHHHT--TTHHHSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH--------HHHHcCCHHHHHHHhHHHHHHHHHHHHccC--CCCchhHHHHHHHH
Confidence 45666666677777777777766551 112221112222334444333333333321 11222 8999999
Q ss_pred HHHHHHhhCCc
Q 002900 369 AIRSLCLKFPL 379 (869)
Q Consensus 369 aI~~la~k~~~ 379 (869)
-|..|+..|..
T Consensus 112 ll~~W~~~f~~ 122 (140)
T PF00790_consen 112 LLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHCC
Confidence 99999998854
No 183
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=56.45 E-value=24 Score=35.36 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 138 LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 138 ~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
++++++.+++++|..++|-|..+++.++-+|....+-+-+.+.+....
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrq 124 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQ 124 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 567889999999999999999999999988865554444444444443
No 184
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=56.33 E-value=2e+02 Score=28.66 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=45.9
Q ss_pred HHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHH
Q 002900 332 ITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNI 391 (869)
Q Consensus 332 L~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~l 391 (869)
+..++.=.+++|++.+++++.+...+.+.+....+++.|...|..-|.....+..++..+
T Consensus 4 v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l 63 (209)
T PF02854_consen 4 VRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAAL 63 (209)
T ss_dssp HHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHH
Confidence 343444455999999999999976665788999999999999998887766666655444
No 185
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=56.26 E-value=3.2e+02 Score=30.26 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCcchhHhhhhHHHhhc-CCCCHHHHhHHHHHhccCC---ChhhHHHHHHHHHHHhcCCChHHHHHHHHH
Q 002900 89 MVYLMIKELSPSADEVIIVTSSLMKDM-TSKTDMYRANAIRVLCRIT---DGTLLTQIERYLKQAIVDKNPVVASAALVS 164 (869)
Q Consensus 89 l~Yl~l~~~~~~~d~~~Lvinsl~kDl-~s~n~~vr~lALr~L~~I~---~~~~~~~l~~~i~~~l~d~~p~VRk~A~la 164 (869)
+.|=.+..+.. .+.+--+++.+..=+ +..||...+.++.+++.-. +.++-+.+...+++++.|+.+-|||.-+.+
T Consensus 6 ~~~~~L~~l~~-~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~ 84 (339)
T PF12074_consen 6 LHASMLSSLPS-SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLC 84 (339)
T ss_pred HHHHHHHhCCC-cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 33334433333 334444444444433 4478888888888887632 566788899999999999999999999999
Q ss_pred Hhhhcc
Q 002900 165 GIHLLQ 170 (869)
Q Consensus 165 l~~L~~ 170 (869)
++..+.
T Consensus 85 ~~~~~~ 90 (339)
T PF12074_consen 85 LGEALW 90 (339)
T ss_pred HHHHHh
Confidence 998874
No 186
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.08 E-value=1.2e+02 Score=29.02 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhH
Q 002900 265 HKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSV 344 (869)
Q Consensus 265 ~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv 344 (869)
..+-+..++.+-.|-.-+. .+ ..|+..|.+-|.++++++.+.||..+-. | ++..-=..-..+++.+=.
T Consensus 16 ~~dw~~ileicD~In~~~~-~~---k~a~rai~krl~~~n~~v~l~AL~LLe~-~-------vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 16 EEDWEAIQAFCEQINKEPE-GP---QLAVRLLAHKIQSPQEKEALQALTVLEA-C-------MKNCGERFHSEVGKFRFL 83 (139)
T ss_pred CCCHHHHHHHHHHHHcCCc-cH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH-H-------HHHcCHHHHHHHHhHHHH
Confidence 3344555555555532211 11 2456666666777777776666654411 0 110000011111222222
Q ss_pred HHHHHHHH-Hhh-hhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC
Q 002900 345 DRLMKQIT-NFM-SDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (869)
Q Consensus 345 ~~Il~eL~-~y~-~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g 396 (869)
+.+++-+. +|. +..+...|..++.-|..|+..|+.... + .-....|+..|
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~-~-~~~Y~~Lk~~G 135 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPK-I-KEAYDMLKKQG 135 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccch-H-HHHHHHHHHCC
Confidence 22222221 122 235678999999999999999986543 3 33344445444
No 187
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.94 E-value=29 Score=37.48 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=74.6
Q ss_pred hhhHHHHHhhcCCCccchhHHHHHHHHhCCC------cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHH
Q 002900 70 EVFFAVTKLFQSRDIGLRRMVYLMIKELSPS------ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIE 143 (869)
Q Consensus 70 ~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~------~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~ 143 (869)
.+.+.|++.+.+..-.+=|-.-..+..++.. .++-.+++--+.|- ...|-++|.-|.++|-.+...-.-..+.
T Consensus 129 ~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka-~~dnrFvreda~kAL~aMV~~vtp~~~L 207 (334)
T KOG2933|consen 129 EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKA-SQDNRFVREDAEKALVAMVNHVTPQKLL 207 (334)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHhccChHHHH
Confidence 4556688888888888888887777655532 23345666666664 3457789988888888777776667788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhhcc
Q 002900 144 RYLKQAIVDKNPVVASAALVSGIHLLQ 170 (869)
Q Consensus 144 ~~i~~~l~d~~p~VRk~A~lal~~L~~ 170 (869)
+.+..++.|.+|.||.+|++|..+...
T Consensus 208 ~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 208 RKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHhhhchhhhhhhhccccccce
Confidence 888888999999999999999876543
No 188
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=55.36 E-value=97 Score=29.26 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHH
Q 002900 266 KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVD 345 (869)
Q Consensus 266 ~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~ 345 (869)
.+-...+|.+..|-.-. ..+. .|+..|.+-|.++++++++.||..+-. |+...-..+. ..+++.
T Consensus 16 ~D~~~il~icd~I~~~~-~~~k---~a~raL~krl~~~n~~vql~AL~lLd~-~vkNcg~~f~-------~~i~s~---- 79 (133)
T cd03561 16 PDWALNLELCDLINLKP-NGPK---EAARAIRKKIKYGNPHVQLLALTLLEL-LVKNCGKPFH-------LQVADK---- 79 (133)
T ss_pred ccHHHHHHHHHHHhCCC-CCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHhCChHHH-------HHHhhH----
Confidence 34455555555553332 1222 466677777777777877777766521 1111100000 011111
Q ss_pred HHHHHHHHhhh---hccHHHHHHHHHHHHHHHhhCCcc
Q 002900 346 RLMKQITNFMS---DIADEFKIVVVEAIRSLCLKFPLK 380 (869)
Q Consensus 346 ~Il~eL~~y~~---~~~~~~r~~~v~aI~~la~k~~~~ 380 (869)
.-+.+|.+.+. ..+.+.|..++.-|..|+..|+..
T Consensus 80 ~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 80 EFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 22223333332 357789999999999999998865
No 189
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=54.98 E-value=76 Score=39.21 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhc---ccChHHHHHHHHHHHHHhcCCChhH
Q 002900 118 KTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLL---QTTPEIVKRWSNEVQEAVQSRAALV 194 (869)
Q Consensus 118 ~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~---~~~pe~v~~~~~~l~~~l~d~~~~v 194 (869)
.+|..-++|.+.|..+.+|++........--.+.|.++ ++|.+-.|-.|+. +...++++.+...+...-.+..+
T Consensus 809 ~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~-~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~-- 885 (1030)
T KOG1967|consen 809 NHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNP-LLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKH-- 885 (1030)
T ss_pred CCcccchHHHHHHHhcCCccccchHHHhhHhhhccChH-HhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchh--
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHH
Q 002900 195 QFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEA 274 (869)
Q Consensus 195 ~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea 274 (869)
+-+.+|.++-.+ +|.+-. -..-..+++.+.+.|.-.+..|..++
T Consensus 886 --~yl~~LshVl~~----------------vP~~vl------------------lp~~~~LlPLLLq~Ls~~D~~v~vst 929 (1030)
T KOG1967|consen 886 --NYLEALSHVLTN----------------VPKQVL------------------LPQFPMLLPLLLQALSMPDVIVRVST 929 (1030)
T ss_pred --HHHHHHHHHHhc----------------CCHHhh------------------ccchhhHHHHHHHhcCCCccchhhhH
Q ss_pred HHHHHhc----cCCChHhHhhHHHHHHHHHcCCCch---hHHHHHHHhcc----------------------ccCCCCCH
Q 002900 275 ARAITEL----NGVTNRELTPAITVLQLFLSSSKPV---LRFAAVRTLNK----------------------SLISDQNR 325 (869)
Q Consensus 275 ~~~i~~l----~~~~~~~~~~a~~~L~~~L~s~~~n---~ry~aL~~l~~----------------------~~L~d~d~ 325 (869)
.++|-.+ ........+..++.+-.+-+++++| +|..||+.|+. .+|+|+-|
T Consensus 930 l~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR 1009 (1030)
T KOG1967|consen 930 LRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR 1009 (1030)
T ss_pred hhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH
Q ss_pred HHHHHHHHH
Q 002900 326 SIATLAITT 334 (869)
Q Consensus 326 sI~~~aL~l 334 (869)
-||+.|.++
T Consensus 1010 lVR~eAv~t 1018 (1030)
T KOG1967|consen 1010 LVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHH
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.90 E-value=56 Score=40.83 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCccchhh--hhHHHHHhhcC-CCccchhHHHHHHHHhCCCcchh------Hhhhh
Q 002900 39 PQLDPRRCSQVITKLLYLLNQGETFTKIEATE--VFFAVTKLFQS-RDIGLRRMVYLMIKELSPSADEV------IIVTS 109 (869)
Q Consensus 39 ~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~--lf~~v~kl~~s-~d~~lKrl~Yl~l~~~~~~~d~~------~Lvin 109 (869)
..++++ -|..-.-++.-+..|.+.|+..+.. +....+..+.+ ..+-+|+-+-+.+..+...-+++ .++.-
T Consensus 567 ~~~~~E-qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 567 QAIPPE-QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred CCCCHH-HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 345544 2442345666677787777766553 22223333444 35778999999998776653333 34555
Q ss_pred HHHhhcCCCCHHHHhHHHHHhccCCCh----------------------hhHHHHHH----HHHHHhcCCChHHHHHHHH
Q 002900 110 SLMKDMTSKTDMYRANAIRVLCRITDG----------------------TLLTQIER----YLKQAIVDKNPVVASAALV 163 (869)
Q Consensus 110 sl~kDl~s~n~~vr~lALr~L~~I~~~----------------------~~~~~l~~----~i~~~l~d~~p~VRk~A~l 163 (869)
-|-.-|.|+-|.+||.|+-+|+.+.+. ..++.++. .+...+.|.+|.||+..++
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 566678899999999999998875442 11333333 5666778999999999999
Q ss_pred HHhhhcccCh
Q 002900 164 SGIHLLQTTP 173 (869)
Q Consensus 164 al~~L~~~~p 173 (869)
++.|+...+.
T Consensus 726 ~ls~~~~g~~ 735 (1387)
T KOG1517|consen 726 ALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHhhH
Confidence 8888765443
No 191
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=54.09 E-value=83 Score=35.52 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=71.5
Q ss_pred hcCCCccchhHHHHHHHHhCCCc---------chhHhhhhHHHhhcCCCCHHHHhHHHHHhcc---C--CChhhHHHHHH
Q 002900 79 FQSRDIGLRRMVYLMIKELSPSA---------DEVIIVTSSLMKDMTSKTDMYRANAIRVLCR---I--TDGTLLTQIER 144 (869)
Q Consensus 79 ~~s~d~~lKrl~Yl~l~~~~~~~---------d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~---I--~~~~~~~~l~~ 144 (869)
+-+++.+.|-.||=.+..+.... +.-.+++=||.+|. +++.-|-.|||.+-. + +..++-..+.+
T Consensus 34 lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 34455888888888884433322 23367777888875 468888888877644 4 44456777888
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhhcccChHHHH
Q 002900 145 YLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (869)
Q Consensus 145 ~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~ 177 (869)
.|.....+.....|..|+-.+..+.-.+|+++-
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv~ 144 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELVA 144 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH
Confidence 888888898888999999999998888999874
No 192
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=52.29 E-value=65 Score=37.19 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=68.0
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHh---------h------hhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHh
Q 002900 329 TLAITTLLKTGNESSVDRLMKQITNF---------M------SDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR 393 (869)
Q Consensus 329 ~~aL~lL~~l~~e~nv~~Il~eL~~y---------~------~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~ 393 (869)
++.++=|..=+|.+|+..|+.||..- . +..+..|-....--++.+..|||..-+.++.-|+-.+.
T Consensus 165 kksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~ 244 (739)
T KOG2140|consen 165 KKSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFK 244 (739)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 44555566668889999999988641 1 12233355555555677788999988777766554444
Q ss_pred h---cCCcchHHHHHHHHHHHHHhCCchHHH-HHHHHHHhhhccCchhHH------HHHHhhhcCCCCC
Q 002900 394 E---EGGFEYKKAIVDSIVILIRDIPDAKEN-GLLHLCEFIEDCEFTYLS------TQILHFLGTEGPK 452 (869)
Q Consensus 394 ~---~g~~~~~~~iv~~i~~ii~~~p~~~~~-~l~~L~~~l~~~~~~~~~------~~~l~ilGE~~~~ 452 (869)
. ..++...-.++.+|..++. +.-.++- ++..|.=.|+.+....+- .-|.|-|.+-++.
T Consensus 245 r~f~RnDk~~c~~~~kfiahLin-q~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr 312 (739)
T KOG2140|consen 245 RSFRRNDKVSCLNASKFIAHLIN-QQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPR 312 (739)
T ss_pred HHhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChH
Confidence 2 2333333334445555543 3334443 444455556665544332 2245555555544
No 193
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=51.11 E-value=88 Score=37.55 Aligned_cols=101 Identities=13% Similarity=0.187 Sum_probs=76.5
Q ss_pred hhHHHHHhhcCCCccchhHHHHHHHHhCCC-cch--hHhhhhHHHhhcCCCCHHHHhHHHHHhccCCC----hhhHHHHH
Q 002900 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADE--VIIVTSSLMKDMTSKTDMYRANAIRVLCRITD----GTLLTQIE 143 (869)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~--~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~----~~~~~~l~ 143 (869)
+-+.++|+|.+.|-..|-+..-++-.|.+. ++. ---+-..+..-+.|.|+.+|..+|++|..+.. ..+-..+.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ell 410 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELL 410 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHH
Confidence 556677888888877776666666556543 222 22345666777899999999999999987543 34666788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhhccc
Q 002900 144 RYLKQAIVDKNPVVASAALVSGIHLLQT 171 (869)
Q Consensus 144 ~~i~~~l~d~~p~VRk~A~lal~~L~~~ 171 (869)
+++.+.-.|.++-+|-+..+|+.|+.+.
T Consensus 411 r~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 411 RYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred HHHHhhCccccCcccccceeeecccccc
Confidence 8888888899999999999999998764
No 194
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=50.30 E-value=5.9e+02 Score=31.64 Aligned_cols=341 Identities=15% Similarity=0.119 Sum_probs=165.5
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCCh----hhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcc--cCh-HHHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDG----TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQ--TTP-EIVKRW 179 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~----~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~--~~p-e~v~~~ 179 (869)
.-+..+.-++|.+|.+|-.+-+-++++..- .....+.+...++..|....||-.|.-++..+.. ..+ +....+
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~ 317 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL 317 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 345556677889999998888888876542 2333456677777788888888888777665443 234 777788
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhc-Chh-----HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCC-c
Q 002900 180 SNEVQEAVQSRAALVQFHALALLHQIRQN-DRL-----AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTG-D 252 (869)
Q Consensus 180 ~~~l~~~l~d~~~~v~~~al~ll~~i~~~-d~~-----~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~-~ 252 (869)
.+.+.....|.+-.+.++....+.++... ++. .+......+.....-.+.+...-...++.++..+ .-|+. .
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~-~~~~i~~ 396 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS-CYPNIPD 396 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc-cccccch
Confidence 88888888887777777666555555421 110 0111111111000000111111111222221110 00222 1
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCCh--HhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-------------
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTN--RELTPAITVLQLFLSSSKPVLRFAAVRTLNK------------- 317 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~--~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~------------- 317 (869)
..++..+..+..+++.-|--..+..+..+....+ ..+..-...+...++.-.+.+|...+..+..
T Consensus 397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 397 SSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 2345666666666665555544544444321111 0011111122223344444555444432221
Q ss_pred ---------ccCCCCCHHHHHHHHHHhhccCChhhHH----HHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHH
Q 002900 318 ---------SLISDQNRSIATLAITTLLKTGNESSVD----RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSL 384 (869)
Q Consensus 318 ---------~~L~d~d~sI~~~aL~lL~~l~~e~nv~----~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~ 384 (869)
.+-.|..-.+|...++-+-.++...-+. ....-+..|+.+...++|..+...+..++.+|. ..|.
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~ 554 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWA 554 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchh
Confidence 1112222223333333222222222211 123334456677788999999999999999998 3455
Q ss_pred HHHHH-HHHhhcC--CcchHHHHHHHHHHHHHh--CCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCC
Q 002900 385 MNFLS-NILREEG--GFEYKKAIVDSIVILIRD--IPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGP 451 (869)
Q Consensus 385 v~~ll-~ll~~~g--~~~~~~~iv~~i~~ii~~--~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~ 451 (869)
...+. ++|...+ +|-+.-.+.+.+..+..- .+-..+..+..+.+...| ..++++..++..+-....
T Consensus 555 ~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D-~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 555 RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD-PVANVRINVAKHLPKILK 625 (759)
T ss_pred HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC-CchhhhhhHHHHHHHHHh
Confidence 44432 2333333 366655555555544332 222233333333333333 234555555555544433
No 195
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=50.25 E-value=14 Score=38.39 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhccC-ChhhHHHHH
Q 002900 325 RSIATLAITTLLKTG-NESSVDRLM 348 (869)
Q Consensus 325 ~sI~~~aL~lL~~l~-~e~nv~~Il 348 (869)
.|=+++||++|.||+ .+.||+-|+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliL 162 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLIL 162 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceee
Confidence 567899999999995 788887554
No 196
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.88 E-value=83 Score=30.24 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=41.4
Q ss_pred cchhHhhhhHHHhhcCCCCHHHHhHHHHHhcc------------CCChhhHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 002900 101 ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQIERYLKQAIVDKNPVVASAALVSG 165 (869)
Q Consensus 101 ~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~------------I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal 165 (869)
+...--++.+|+|-|+++||.++-+||..|-. |.+.++.+.+...+.. ..++-||++++..+
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li 109 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELI 109 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHH
Confidence 34467788999999999999999999876643 3344444444433322 56777888766543
No 197
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.67 E-value=1e+02 Score=37.84 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=47.6
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccCC------ChhhHHHHHHHHHHH-hcCCChHHHHHHHHHHhhhcc
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRIT------DGTLLTQIERYLKQA-IVDKNPVVASAALVSGIHLLQ 170 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I~------~~~~~~~l~~~i~~~-l~d~~p~VRk~A~lal~~L~~ 170 (869)
..+|++.+-..+|+...|+.++..+|... ..+..-.+...|.+. -.|.++.|||+|+.-+.++..
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 67899999999999999999888877632 233333333333333 368999999999999887765
No 198
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=47.87 E-value=1.3e+02 Score=29.63 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=39.9
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhcc---CCChhhH-H---HHHHHHHHHhcC-CChHHHHHHHHHHhhhc---ccChHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCR---ITDGTLL-T---QIERYLKQAIVD-KNPVVASAALVSGIHLL---QTTPEI 175 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~---I~~~~~~-~---~l~~~i~~~l~d-~~p~VRk~A~lal~~L~---~~~pe~ 175 (869)
.+..+.+=|+|+++.-|=.+++.+.- -++++.. + ...+.+.+.+.. ..+.+++.|+.++.+++ ...|++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 33445555677777777555544443 3334433 2 244455555544 44667777777777666 345666
Q ss_pred HHH
Q 002900 176 VKR 178 (869)
Q Consensus 176 v~~ 178 (869)
.++
T Consensus 106 ~Re 108 (165)
T PF08167_consen 106 TRE 108 (165)
T ss_pred HHH
Confidence 553
No 199
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=46.77 E-value=31 Score=25.02 Aligned_cols=28 Identities=21% Similarity=-0.001 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhc
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLL 169 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~ 169 (869)
.++.+.++|.+.++.|++.|+-|+..|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4667777888889999999988887653
No 200
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=46.26 E-value=1.9e+02 Score=31.78 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHhhhccCc---hhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHH
Q 002900 402 KAIVDSIVILIRDIP-DAKENGLLHLCEFIEDCEF---TYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAA 477 (869)
Q Consensus 402 ~~iv~~i~~ii~~~p-~~~~~~l~~L~~~l~~~~~---~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~ 477 (869)
+.+.+.|+.|+.+.| |-.+..+..+|+.+-+-.+ +.++..++| .+||.+..+.+ +|..
T Consensus 64 e~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLs-----------------nLfn~~d~~~~-aR~~ 125 (378)
T KOG2753|consen 64 ECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLS-----------------NLFNGVDKPTP-ARYQ 125 (378)
T ss_pred HHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHH-----------------HHHhccCCCch-HHHH
Confidence 667777777777654 5555555555555433111 223334444 34665555555 8999
Q ss_pred HHHHHHHHhccc
Q 002900 478 AVSTLAKFGAMV 489 (869)
Q Consensus 478 ~ltal~Kl~~~~ 489 (869)
+..++.+++..+
T Consensus 126 Vy~~lv~la~~~ 137 (378)
T KOG2753|consen 126 VYMSLVTLAASC 137 (378)
T ss_pred HHHHHHHHHhhc
Confidence 999999998876
No 201
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=46.21 E-value=84 Score=29.70 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=47.8
Q ss_pred HHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC---ChhhHHH-----HHHHHHHHhcC---CChHHH
Q 002900 91 YLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT---DGTLLTQ-----IERYLKQAIVD---KNPVVA 158 (869)
Q Consensus 91 Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~---~~~~~~~-----l~~~i~~~l~d---~~p~VR 158 (869)
-+.++..... +...--++.+|+|=|+++||.++-+||..|-.+. ++.+... ....+.+.+.. .++-||
T Consensus 21 il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk 100 (133)
T cd03561 21 NLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVR 100 (133)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHH
Confidence 3344444443 4567889999999999999999999998775421 2212222 22235555543 467788
Q ss_pred HHHHHHHh
Q 002900 159 SAALVSGI 166 (869)
Q Consensus 159 k~A~lal~ 166 (869)
++++-.+.
T Consensus 101 ~kil~ll~ 108 (133)
T cd03561 101 EKALELIL 108 (133)
T ss_pred HHHHHHHH
Confidence 88665544
No 202
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=45.89 E-value=2.4e+02 Score=29.84 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=66.3
Q ss_pred ChHHHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCC-----CCChhHHHHHHHHHHHhhh
Q 002900 172 TPEIVK---RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGT-----VRSPLAQCLLIRYTTQVIR 243 (869)
Q Consensus 172 ~pe~v~---~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~-----~~~~~~~v~llr~l~~~~~ 243 (869)
.|++++ +..+...+.+++.+.....+|+.+|.+.+.. .++..++.-+.... ...-|..=.+-|++..+..
T Consensus 33 ~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~--~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~ 110 (249)
T PF06685_consen 33 TPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE--RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD 110 (249)
T ss_pred hHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh--hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC
Confidence 455443 4444555666666666677999999988765 56655555333110 0111222234455544322
Q ss_pred hhcCCCCCchhhHHHHHHHHhcC--ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHc
Q 002900 244 EAATTQTGDRPFYDFLESCLRHK--AEMVIFEAARAITELNGVTNRELTPAITVLQLFLS 301 (869)
Q Consensus 244 ~~~~dp~~~~~l~~~l~~~L~~~--~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~ 301 (869)
. + .+.|..++.+. +.-|...|++++..+....+..+..++..++.++.
T Consensus 111 G---~-------~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~ 160 (249)
T PF06685_consen 111 G---D-------IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLN 160 (249)
T ss_pred C---C-------HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1 1 34566666654 35688888888877643344455667777666654
No 203
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=45.63 E-value=4.5e+02 Score=28.88 Aligned_cols=132 Identities=13% Similarity=0.153 Sum_probs=82.3
Q ss_pred cCCCccchhHHHHHH-HHhCCCcchhHhh---hhHHHhhcCCCCHHHHhHHHHHhccCCCh-------hhH----HHHHH
Q 002900 80 QSRDIGLRRMVYLMI-KELSPSADEVIIV---TSSLMKDMTSKTDMYRANAIRVLCRITDG-------TLL----TQIER 144 (869)
Q Consensus 80 ~s~d~~lKrl~Yl~l-~~~~~~~d~~~Lv---insl~kDl~s~n~~vr~lALr~L~~I~~~-------~~~----~~l~~ 144 (869)
.+.|+..|.-....+ -++....+-+-++ ---|++-|.+++..++.+|++.+++|-.. ++. ..+.+
T Consensus 52 eNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilk 131 (524)
T KOG4413|consen 52 ENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILK 131 (524)
T ss_pred ccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHH
Confidence 577888885555444 3343322222222 22467888999999999999999987432 221 22556
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHH-HHH------HHhcCCChhHHHHHHHHHHHHhhcChhH
Q 002900 145 YLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN-EVQ------EAVQSRAALVQFHALALLHQIRQNDRLA 212 (869)
Q Consensus 145 ~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~-~l~------~~l~d~~~~v~~~al~ll~~i~~~d~~~ 212 (869)
.|..++...+--|.|+|.-++-++.. .|+.+.-+++ ++. .+-...+..+.+..+.++.+|..-.|..
T Consensus 132 lildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 132 LILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence 67777788999999999999988764 5665553322 111 1112235667777777877776554444
No 204
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.35 E-value=22 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=17.8
Q ss_pred HHHhHHHHHhccCCChhhHHHHHHHH
Q 002900 121 MYRANAIRVLCRITDGTLLTQIERYL 146 (869)
Q Consensus 121 ~vr~lALr~L~~I~~~~~~~~l~~~i 146 (869)
.+|-.|..+|+++++++..+.|...+
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~~l 27 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIKAL 27 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHh
Confidence 46777777778777777666655544
No 205
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=43.45 E-value=5.5e+02 Score=29.27 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHH------HHHHhhccCCCHHHHHHHHHHHHHH
Q 002900 420 ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYI------RYIYNRVHLENATVRAAAVSTLAKF 485 (869)
Q Consensus 420 ~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l------~~i~~~~~~e~~~vr~~~ltal~Kl 485 (869)
-.+++.|..+++...+|.+.+.+++=||||....+.....+ ..+.+-+.-++|.||-.+|.|.-|+
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 35788889999988889999999999999977655544333 2334445567888888887777665
No 206
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=41.94 E-value=5.2e+02 Score=28.56 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhh-cChhHHHHHHHhhc
Q 002900 180 SNEVQEAVQSRAALVQFHALALLHQIRQ-NDRLAVSKLVTSLT 221 (869)
Q Consensus 180 ~~~l~~~l~d~~~~v~~~al~ll~~i~~-~d~~~~~~li~~l~ 221 (869)
+..+...|+...+..+..++.+|.+|.. +.+.....+...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd 100 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFD 100 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 5566677777777777899999999987 44444555655554
No 207
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.42 E-value=1.1e+03 Score=31.99 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=52.6
Q ss_pred chhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCC-HHHHHH
Q 002900 252 DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQN-RSIATL 330 (869)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d-~sI~~~ 330 (869)
.+.+.+-+..++.-+...+.-|.+..+-.+-+ ...-..++..|..++.+ ++.+.-..|+++..-.|++.- ..||.+
T Consensus 190 ~~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~--ds~h~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~ 266 (1426)
T PF14631_consen 190 SEELTDKLFEVLSIAPVELQKEIISSLPEILD--DSQHDEVVEELLELLQE-NPELTVPILDALSNLNLSPELLEEVREK 266 (1426)
T ss_dssp HHHHHHHHHHHHHHS-TTTHHHHHHTHHHHS---GGGHHHHHHHHHHHHHH--STTHHHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHhc-CCchhhhHHHHHhcCCCCHHHHHHHHHH
Confidence 34555556666666666666666655554421 22233566666666654 344555556655431122111 236777
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhhhh
Q 002900 331 AITTLLKTGNESSVDRLMKQITNFMSD 357 (869)
Q Consensus 331 aL~lL~~l~~e~nv~~Il~eL~~y~~~ 357 (869)
+++.|- -+.-+....+++-|.++++.
T Consensus 267 vl~~L~-s~~~e~LP~lirFLL~s~t~ 292 (1426)
T PF14631_consen 267 VLEKLS-SVDLEDLPVLIRFLLQSITP 292 (1426)
T ss_dssp HHHSTT-SS-TTHHHHHHHHHHHS-SS
T ss_pred HHHHHh-cCChhhhHHHHHHHHHhCCc
Confidence 777664 45556677777777766553
No 208
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.58 E-value=4.4e+02 Score=28.76 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=30.3
Q ss_pred cCCCCCHHHHHHHHHHhhccC---ChhhHH---HHHHHHHHhhhh----ccHHHHHHHHHHHHHHHh
Q 002900 319 LISDQNRSIATLAITTLLKTG---NESSVD---RLMKQITNFMSD----IADEFKIVVVEAIRSLCL 375 (869)
Q Consensus 319 ~L~d~d~sI~~~aL~lL~~l~---~e~nv~---~Il~eL~~y~~~----~~~~~r~~~v~aI~~la~ 375 (869)
+++.+|..|...|..+|..+. +..... .++..+.+++.+ .+.++...++..+..+..
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 366678888877777766662 332332 555666665543 344566667777777753
No 209
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=40.02 E-value=3.8e+02 Score=26.48 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=39.3
Q ss_pred CChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHH
Q 002900 339 GNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNI 391 (869)
Q Consensus 339 ~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~l 391 (869)
.+++|++.++++|.....+ +++.+..+++.|...+...|.....|..++..+
T Consensus 11 Ls~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l 62 (200)
T smart00543 11 LSPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYARLCALL 62 (200)
T ss_pred CCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 4589999999999986543 467999999999999998776655555544433
No 210
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.48 E-value=2.3e+02 Score=30.82 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=61.7
Q ss_pred hHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhcc---CCChhh---HHHHHHHHHHHhcCCChHHHHHH
Q 002900 88 RMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR---ITDGTL---LTQIERYLKQAIVDKNPVVASAA 161 (869)
Q Consensus 88 rl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~---I~~~~~---~~~l~~~i~~~l~d~~p~VRk~A 161 (869)
+.-|+..+.|.+- +..-++.++..+-|.|.|....+-+|..|.. ...+++ ...++-.|.+.+.+.+..|.|+|
T Consensus 71 ~~e~~~sk~l~~f-d~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA 149 (334)
T KOG2933|consen 71 SVEYIVSKNLSPF-DDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAA 149 (334)
T ss_pred cHHHhhhcccCcc-CcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 5667776665543 3445667777888999999888877776663 333333 33456667778888899999999
Q ss_pred HHHHhhhcccChHHH
Q 002900 162 LVSGIHLLQTTPEIV 176 (869)
Q Consensus 162 ~lal~~L~~~~pe~v 176 (869)
++++..++..+-+.+
T Consensus 150 ~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 150 CMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999886544443
No 211
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=38.71 E-value=5.3e+02 Score=29.53 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCCC-Cccchhh-hhHHHHHhhcCCCccchhHHHHHHHHhCCCcch-hHhhhhHHH--------h-hcCC
Q 002900 50 ITKLLYLLNQGETF-TKIEATE-VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADE-VIIVTSSLM--------K-DMTS 117 (869)
Q Consensus 50 l~kli~l~~~G~~~-~~~e~s~-lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~-~~Lvinsl~--------k-Dl~s 117 (869)
...++.++..|++= ..+-... +|-.+.-.+.|+|+.+--+|-|++..++...+- ..++-+.+. + ---+
T Consensus 293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd 372 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD 372 (604)
T ss_pred hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56778888899620 0011111 444466678999999999999999999875332 334444433 2 2234
Q ss_pred CCHHHHhHHHHHhccCCChh-----hHHH-HHHHHHHHhcCCChHHHHHHHHHHhhhcccChH-HH----H--HHHHHHH
Q 002900 118 KTDMYRANAIRVLCRITDGT-----LLTQ-IERYLKQAIVDKNPVVASAALVSGIHLLQTTPE-IV----K--RWSNEVQ 184 (869)
Q Consensus 118 ~n~~vr~lALr~L~~I~~~~-----~~~~-l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe-~v----~--~~~~~l~ 184 (869)
.|-..+-.+|.+|-++..|- +++. +...|...+.-.+|-|.-+-+ +-+|+..+..+ +. + +++.++.
T Consensus 373 gnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkll-gTlrM~~d~qe~~a~eL~kn~~l~ekLv 451 (604)
T KOG4500|consen 373 GNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLL-GTLRMIRDSQEYIACELAKNPELFEKLV 451 (604)
T ss_pred ccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHH-HHHHHHHhchHHHHHHHhcCHHHHHHHH
Confidence 45555555555555544332 3333 444555555555555554433 33333332222 11 1 2333444
Q ss_pred HHhcCCCh-hHHHHHHHHHHHHhhc
Q 002900 185 EAVQSRAA-LVQFHALALLHQIRQN 208 (869)
Q Consensus 185 ~~l~d~~~-~v~~~al~ll~~i~~~ 208 (869)
+-..++|. +|.+-...++..+-+|
T Consensus 452 ~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 452 DWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HhhhCCccchhhhhhhHHHHHHHHh
Confidence 44344454 4766666665554444
No 212
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=38.51 E-value=2.1e+02 Score=27.41 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=39.6
Q ss_pred HHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH
Q 002900 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (869)
Q Consensus 160 ~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~ 215 (869)
.+.+-+..+....|+-.+..+..+...++++||.|+..|+.+|-.+.++=+..+..
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ 75 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHS 75 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 45566666666666655666677777788999999999999988877664444433
No 213
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=38.07 E-value=4.9e+02 Score=32.60 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh-HHHHH---HHH-HHHHHhcCCChhHHHHHHHHHHHHhhcCh
Q 002900 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-EIVKR---WSN-EVQEAVQSRAALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 136 ~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p-e~v~~---~~~-~l~~~l~d~~~~v~~~al~ll~~i~~~d~ 210 (869)
.++...+.+.+...+.|+.+-=|+.|+-.+.......+ +.... .+- -+.-.+-|.|-.|...|+..|.+|+..-+
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 34667788888899999999999999999998775444 22221 111 11223356777888888878888876544
Q ss_pred hHHHH
Q 002900 211 LAVSK 215 (869)
Q Consensus 211 ~~~~~ 215 (869)
..+.+
T Consensus 328 ~~~~~ 332 (815)
T KOG1820|consen 328 PLFRK 332 (815)
T ss_pred hhhHH
Confidence 33333
No 214
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=36.97 E-value=5.5e+02 Score=27.42 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHhhcCCCCHHHHhHHHHHhccCC--------ChhhHHHHHHHHHHHhcCCChHHH--HHHHHHHhhhcccChHHHHHH
Q 002900 110 SLMKDMTSKTDMYRANAIRVLCRIT--------DGTLLTQIERYLKQAIVDKNPVVA--SAALVSGIHLLQTTPEIVKRW 179 (869)
Q Consensus 110 sl~kDl~s~n~~vr~lALr~L~~I~--------~~~~~~~l~~~i~~~l~d~~p~VR--k~A~lal~~L~~~~pe~v~~~ 179 (869)
.|..-|+|.++.+|+-|++.|+.+- .++-++.+.......+.|... +. =+|+.++.+.-...++.+..+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHHHHHHHHHHhCcCCChhhHHHH
Confidence 4566789999999999999998642 234456677777777755432 22 233344444433445555555
Q ss_pred HHHHHH
Q 002900 180 SNEVQE 185 (869)
Q Consensus 180 ~~~l~~ 185 (869)
+..+.+
T Consensus 82 ~~~l~~ 87 (262)
T PF14500_consen 82 LRSLFQ 87 (262)
T ss_pred HHHHHH
Confidence 555544
No 215
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.50 E-value=1.8e+02 Score=27.52 Aligned_cols=76 Identities=21% Similarity=0.121 Sum_probs=48.5
Q ss_pred HHHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC---ChhhH-----HHHHHHHHHHhcCCC--hHHH
Q 002900 90 VYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT---DGTLL-----TQIERYLKQAIVDKN--PVVA 158 (869)
Q Consensus 90 ~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~---~~~~~-----~~l~~~i~~~l~d~~--p~VR 158 (869)
.-+.++..... ++..--++.+|+|=|+++||.+.-.||..|-.+. +..+. ..+...+.+.+.++. |.||
T Consensus 20 ~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk 99 (133)
T smart00288 20 LILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVK 99 (133)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHH
Confidence 34555565544 5557889999999999999999999998876432 12121 123445555555532 3477
Q ss_pred HHHHHHH
Q 002900 159 SAALVSG 165 (869)
Q Consensus 159 k~A~lal 165 (869)
++++..+
T Consensus 100 ~kil~li 106 (133)
T smart00288 100 KRILELI 106 (133)
T ss_pred HHHHHHH
Confidence 7765543
No 216
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=36.38 E-value=4.6e+02 Score=26.32 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc---cCCChHhHhhHHHHHHHHHcCCCchhHHHH
Q 002900 259 LESCLRHKAEMVIFEAARAITEL---NGVTNRELTPAITVLQLFLSSSKPVLRFAA 311 (869)
Q Consensus 259 l~~~L~~~~~aV~~ea~~~i~~l---~~~~~~~~~~a~~~L~~~L~s~~~n~ry~a 311 (869)
+.++..+.+..|.+.|++++-.. +-..|. .+++.|..+.+++++.+|-.|
T Consensus 13 Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---~cvp~lIAL~ts~~~~ir~~A 65 (187)
T PF12830_consen 13 ILELCLSSDDSVRLAALQVLELILRQGLVNPK---QCVPTLIALETSPNPSIRSRA 65 (187)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---HHHhHhhhhhCCCChHHHHHH
Confidence 33344455666666666665322 212222 355555555554444444333
No 217
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=36.32 E-value=1.2e+02 Score=27.61 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH
Q 002900 146 LKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (869)
Q Consensus 146 i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~ 215 (869)
|.++-.+..+---.....-+..+...+++..+..+..+...+.++++.+++-|+.+|..+.++-+..+..
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~ 74 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQ 74 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3334444333333344555555555556666677777778888889999999999998888775544443
No 218
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.28 E-value=2.1e+02 Score=28.02 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=17.1
Q ss_pred hhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh
Q 002900 167 HLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL 211 (869)
Q Consensus 167 ~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~ 211 (869)
++++.+++...+.++.+.+.+-........+-+-+|..+.+..+.
T Consensus 44 ~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~ 88 (158)
T PF14676_consen 44 ELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPL 88 (158)
T ss_dssp HHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChH
Confidence 455555444333333333322211122122335566666665443
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=36.06 E-value=5.7e+02 Score=27.35 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHH
Q 002900 325 RSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMN 386 (869)
Q Consensus 325 ~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~ 386 (869)
+.+..++|+++.+.++.+.++.++..+..-+.-.+..| ..++..|..+..+-|+....+++
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~-~~~l~~i~~l~~~~~~~a~~~ld 181 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF-DSILHHIKQLAEKSPELAAFCLD 181 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH-HHHHHHHHHHHhhCcHHHHHHHH
Confidence 44666777777666666666666665555332222222 23455555555555544333333
No 220
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=35.84 E-value=5.3e+02 Score=26.90 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=14.2
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhh
Q 002900 407 SIVILIRDIPDAKENGLLHLCEFI 430 (869)
Q Consensus 407 ~i~~ii~~~p~~~~~~l~~L~~~l 430 (869)
.++.+++..|+.-...+..+..++
T Consensus 107 s~~~ic~~~p~~g~~ll~~ls~~L 130 (234)
T PF12530_consen 107 SIRDICCSRPDHGVDLLPLLSGCL 130 (234)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHH
Confidence 566666666664444555555666
No 221
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.77 E-value=5.9e+02 Score=27.46 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=41.0
Q ss_pred ChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q 002900 340 NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILI 412 (869)
Q Consensus 340 ~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii 412 (869)
++.+...|++.|..-- .+..=|..++.-...++..---.+..+++++..++..+.++.+-..+...+..+.
T Consensus 17 d~~~~~~l~~~L~~~~--l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~ 87 (324)
T PF11838_consen 17 DEENWDALIKQLQSNH--LSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLR 87 (324)
T ss_dssp CTTHHHHHHHHHHHHG--S-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence 4566677777665521 4555677777777777765444666777777666455556655555555555444
No 222
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.86 E-value=1.5e+02 Score=34.69 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002900 124 ANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLH 203 (869)
Q Consensus 124 ~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~ 203 (869)
|.|+-+|+.=.+.+|+ .+.+-..+.-.++.+||.--+|..-++..+|.. +.++.+...+.|.|..|.++++..+.
T Consensus 627 g~AliamGedig~eMv---lRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm--~vfDtL~r~shd~dl~v~~ntIfamG 701 (881)
T COG5110 627 GCALIAMGEDIGSEMV---LRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM--NVFDTLERSSHDGDLNVIINTIFAMG 701 (881)
T ss_pred hhHHhhhcchhhHHHH---HHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch--HHHHHHHHhccccchhHHHHHHHHhh
Q ss_pred HHhhcChhH-HHHHHHhh
Q 002900 204 QIRQNDRLA-VSKLVTSL 220 (869)
Q Consensus 204 ~i~~~d~~~-~~~li~~l 220 (869)
.+......+ +.+++.++
T Consensus 702 LiGAGT~NaRlaqlLrQl 719 (881)
T COG5110 702 LIGAGTLNARLAQLLRQL 719 (881)
T ss_pred ccccCcchHHHHHHHHHH
No 223
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=34.74 E-value=6.6e+02 Score=27.69 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=48.1
Q ss_pred HHHhHHHHHhccCCChhhHHHHHHHHHHHhc-CCChHHHHHHHHHHhhhcccC-hHHHHHHHHHHHHHhcCCChhHHHHH
Q 002900 121 MYRANAIRVLCRITDGTLLTQIERYLKQAIV-DKNPVVASAALVSGIHLLQTT-PEIVKRWSNEVQEAVQSRAALVQFHA 198 (869)
Q Consensus 121 ~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~-d~~p~VRk~A~lal~~L~~~~-pe~v~~~~~~l~~~l~d~~~~v~~~a 198 (869)
..|.+....|+.+......+.+...+-..+. +.|.-+...++-++.+-+... .++-+..++.+.+-+.|+.+.+...-
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w 81 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAW 81 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHH
Confidence 4577777777777764455555555555554 467777777777776433222 22223444444455666666555544
Q ss_pred HHHHHHHh
Q 002900 199 LALLHQIR 206 (869)
Q Consensus 199 l~ll~~i~ 206 (869)
+..+.++.
T Consensus 82 ~~~~~~~~ 89 (339)
T PF12074_consen 82 LLCLGEAL 89 (339)
T ss_pred HHHHHHHH
Confidence 44444443
No 224
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=34.10 E-value=6.9e+02 Score=27.75 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred chhHhhhhHHHhhcCCCC-HHHHhHHHH-------HhccCCChhhHHHHHHHHHHHhcCCChH-----------------
Q 002900 102 DEVIIVTSSLMKDMTSKT-DMYRANAIR-------VLCRITDGTLLTQIERYLKQAIVDKNPV----------------- 156 (869)
Q Consensus 102 d~~~Lvinsl~kDl~s~n-~~vr~lALr-------~L~~I~~~~~~~~l~~~i~~~l~d~~p~----------------- 156 (869)
|.+.+..|.++....+.. |.+.-+.=+ .+.....++++-..-..++.|+.|..-.
T Consensus 95 dv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~ 174 (335)
T PF08569_consen 95 DVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQ 174 (335)
T ss_dssp HHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTT
T ss_pred cHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhc
Q ss_pred -----HHHHHHHHHhhhcccChHHHH--------HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccC
Q 002900 157 -----VASAALVSGIHLLQTTPEIVK--------RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRG 223 (869)
Q Consensus 157 -----VRk~A~lal~~L~~~~pe~v~--------~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~ 223 (869)
|..-|...+-.+...++.++. +|+.....++.++|..+..+++-+|.++--+
T Consensus 175 ~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld--------------- 239 (335)
T PF08569_consen 175 LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD--------------- 239 (335)
T ss_dssp SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS---------------
T ss_pred CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc---------------
Q ss_pred CCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHH
Q 002900 224 TVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAI 278 (869)
Q Consensus 224 ~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i 278 (869)
+-..-...|++. ....+..+-.+|++.+..|.+||...+
T Consensus 240 ----r~n~~vm~~yi~------------~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 240 ----RSNFNVMTRYIS------------SPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp ----GGGHHHHHHHTT-------------HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHC------------CHHHHHHHHHHhcCcchhhhHHHHHHH
No 225
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=33.63 E-value=8.7e+02 Score=28.75 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=64.1
Q ss_pred HHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHH-HHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhh
Q 002900 368 EAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIV-ILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFL 446 (869)
Q Consensus 368 ~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~-~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~il 446 (869)
+-+...+++-|+...-.+..+..+|..-... ....+..+. -|.++.|+.-+..+..||-.+.|.++..+...++-.|
T Consensus 184 rvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~--~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~i 261 (851)
T KOG3723|consen 184 RVLSAVYEKQPQPINPHLPELLALLSQLEPE--QYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEI 261 (851)
T ss_pred HHHHHHHhcCCCccCcccHHHHHHhcCCCHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 3334445555655444455555555432211 122233333 3446778999999999999999988899999999999
Q ss_pred cCCCCCC-CChHHHHHHHHhhcc
Q 002900 447 GTEGPKT-SDPSKYIRYIYNRVH 468 (869)
Q Consensus 447 GE~~~~~-~~~~~~l~~i~~~~~ 468 (869)
..|++.. ....+.++.+..++-
T Consensus 262 a~~~pv~l~~~~E~l~e~~~~~p 284 (851)
T KOG3723|consen 262 AVYEPVALNSFLEMLKEIGERFP 284 (851)
T ss_pred HhcCccchhhHHHHHHHHHHhCC
Confidence 9999864 346677777776554
No 226
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=33.20 E-value=75 Score=28.84 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 145 YLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 145 ~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
.+..++.|+++.||-.|+..++++ +|+..++.+.++.+
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~---~p~eA~~~Le~ia~ 88 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRY---APEEARKVLEEIAS 88 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT----HHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHh---CHHHHHHHHHHHHH
Confidence 456678999999999988887774 67777777766655
No 227
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=33.05 E-value=3.2e+02 Score=31.81 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHH---HHHHHHHHhhhh------------
Q 002900 293 ITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVD---RLMKQITNFMSD------------ 357 (869)
Q Consensus 293 ~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~---~Il~eL~~y~~~------------ 357 (869)
...++.+|++...+-|..||-.| +.+ +++=..++|++|+..|....-+ ..++-|....-.
T Consensus 88 ~k~~~~lls~GT~~DrIsalTLL----Vq~-sP~h~~k~letLls~C~kksrn~a~q~l~~lKDLfi~gllp~rklry~k 162 (821)
T COG5593 88 AKIEKDLLSHGTVKDRISALTLL----VQR-SPSHNAKNLETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNRKLRYFK 162 (821)
T ss_pred HHHHHHHHhcCchhhhhhhhHhh----hcc-CcchHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhcccCcchhhHhhh
Q ss_pred ----ccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhcc
Q 002900 358 ----IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC 433 (869)
Q Consensus 358 ----~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~ 433 (869)
.+.+....-+. ..+-+.|......-+=.++..|+...-.-++..++..|-+++.+.|+.-...++.+++.|.|
T Consensus 163 ~q~~lsk~v~~k~l~--~~~fesflk~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGD- 239 (821)
T COG5593 163 NQPGLSKEVQNKYLK--QRIFESFLKNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGD- 239 (821)
T ss_pred cCcchhhhhcchHHH--HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcc-
Q ss_pred CchhHHHHHHhhh
Q 002900 434 EFTYLSTQILHFL 446 (869)
Q Consensus 434 ~~~~~~~~~l~il 446 (869)
....+...+.|+|
T Consensus 240 k~~kvsskasY~i 252 (821)
T COG5593 240 KRDKVSSKASYVI 252 (821)
T ss_pred chhhhhhhhhHHH
No 228
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.29 E-value=6.5e+02 Score=32.29 Aligned_cols=57 Identities=11% Similarity=0.324 Sum_probs=35.5
Q ss_pred hhccHHHHHHHHHHHHHHHhhCCcc--HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Q 002900 356 SDIADEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNILREEGGFEYKKAIVDSIVILIR 413 (869)
Q Consensus 356 ~~~~~~~r~~~v~aI~~la~k~~~~--~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~ 413 (869)
+++++++|...|..||.|+..||+- .+.|+..+.=.|.+..+ .|...++.++..+..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~-~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNG-TVRLRCLKALIKLYE 355 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCcc-HHHHHHHHHHHHHHh
Confidence 3789999999999999999999974 33444443333444322 244444444444443
No 229
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=31.96 E-value=3.6e+02 Score=25.43 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 002900 361 EFKIVVVEAIRSLCLKFP 378 (869)
Q Consensus 361 ~~r~~~v~aI~~la~k~~ 378 (869)
..+..++.-|..|+..|+
T Consensus 97 ~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 97 LVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 388888888888888886
No 230
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=31.92 E-value=1.4e+02 Score=29.95 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=53.2
Q ss_pred hcCCCccchhHHHHHHHHhCCC-c-c----hhHhhhhHHHhhcCCCCHHHHhHHHHHhccC--CChhhHHHHHHHHHHHh
Q 002900 79 FQSRDIGLRRMVYLMIKELSPS-A-D----EVIIVTSSLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQIERYLKQAI 150 (869)
Q Consensus 79 ~~s~d~~lKrl~Yl~l~~~~~~-~-d----~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I--~~~~~~~~l~~~i~~~l 150 (869)
+..+++.-+=+..-.+.++... . + .+--.|-.|++.|++.|+.+.+.+|++|..+ ..+.+.++|.++.++.+
T Consensus 47 L~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 47 LRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLL 126 (183)
T ss_pred hhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4667777777777777666443 2 2 2234566788999999999999999999887 34456777888887776
Q ss_pred c
Q 002900 151 V 151 (869)
Q Consensus 151 ~ 151 (869)
.
T Consensus 127 p 127 (183)
T PF10274_consen 127 P 127 (183)
T ss_pred H
Confidence 4
No 231
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.94 E-value=4.8e+02 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHhhCCcc--HHHHHHHHHHHHhhcC
Q 002900 359 ADEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNILREEG 396 (869)
Q Consensus 359 ~~~~r~~~v~aI~~la~k~~~~--~~~~v~~ll~ll~~~g 396 (869)
+.+.+..++.-|..|+..|+.+ +..+ .-+.+.|...|
T Consensus 99 ~~~Vk~kil~li~~W~~~f~~~~~l~~i-~~~y~~L~~~G 137 (141)
T cd03565 99 PTIVQEKVLALIQAWADAFRGSPDLTGV-VEVYEELKKKG 137 (141)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccchHH-HHHHHHHHHcC
Confidence 4578999999999999988754 3344 33444455444
No 232
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=30.04 E-value=6.5e+02 Score=26.21 Aligned_cols=116 Identities=15% Similarity=0.042 Sum_probs=73.8
Q ss_pred HHHhCCCc-chhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChh--hHHHHHHHHHH-------HhcC--CChHHHHHH
Q 002900 94 IKELSPSA-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT--LLTQIERYLKQ-------AIVD--KNPVVASAA 161 (869)
Q Consensus 94 l~~~~~~~-d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~--~~~~l~~~i~~-------~l~d--~~p~VRk~A 161 (869)
+.+++... ...-+++.+|..=...+....++.++|.++.+-..+ ..+.+.+.+.. ...+ ....+.-..
T Consensus 25 L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~ 104 (234)
T PF12530_consen 25 LPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISI 104 (234)
T ss_pred HHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 33555443 445667777766666666666888888888754332 22333333333 1121 223344444
Q ss_pred HHHHhhhcccChHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHhhcC
Q 002900 162 LVSGIHLLQTTPEIVKRWSNEVQEAV-QSRAALVQFHALALLHQIRQND 209 (869)
Q Consensus 162 ~lal~~L~~~~pe~v~~~~~~l~~~l-~d~~~~v~~~al~ll~~i~~~d 209 (869)
+.++..+....|+....++..+...+ .+.++.++..|+-.+..+++.+
T Consensus 105 a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 105 AASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 56677788888887778999999999 6778888888888888888654
No 233
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=29.96 E-value=2.3e+02 Score=33.74 Aligned_cols=160 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccH-HHHHHHHHHHHH------HHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH
Q 002900 348 MKQITNFMSDIAD-EFKIVVVEAIRS------LCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE 420 (869)
Q Consensus 348 l~eL~~y~~~~~~-~~r~~~v~aI~~------la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~ 420 (869)
+++..-|+...+. +.....+.++++ |.-.+-...-|-+..+..-++... =++-.|+++++++.
T Consensus 463 mRevLvyLthL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~---EkrF~VnviKdLL~------- 532 (1053)
T COG5101 463 MREVLVYLTHLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVN---EKRFFVNVIKDLLA------- 532 (1053)
T ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHH---HHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHHhhhccCchhHHHH-HHhhhcCCCCCCCChHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHhcccc-----
Q 002900 421 NGLLHLCEFIEDCEFTYLSTQ-ILHFLGTEGPKTSDPSKYIRYIYNRVH----LENATVRAAAVSTLAKFGAMVD----- 490 (869)
Q Consensus 421 ~~l~~L~~~l~~~~~~~~~~~-~l~ilGE~~~~~~~~~~~l~~i~~~~~----~e~~~vr~~~ltal~Kl~~~~~----- 490 (869)
||+.=.--....+.+. +-|++|.|.......-.+++-..+++. ..++-|+-++-.++.|+..+||
T Consensus 533 -----LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~ 607 (1053)
T COG5101 533 -----LCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVT 607 (1053)
T ss_pred -----HHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhh
Q ss_pred ----CchHHHHHHHHHhhcCCC-HHHHHHHHHHHHHh
Q 002900 491 ----ALKPRVFVLLRRCLYDGD-DEVRDRATLYLNTV 522 (869)
Q Consensus 491 ----~l~~~i~~ll~~~~~d~d-~evrdRA~~yl~ll 522 (869)
+..+-|..+++..-.-.. .+-||.-.+|-++.
T Consensus 608 Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg 644 (1053)
T COG5101 608 QQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACG 644 (1053)
T ss_pred cCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHh
No 234
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=29.90 E-value=7.1e+02 Score=26.57 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=11.8
Q ss_pred HHhcCCChhHHHHHHHHHHHHh
Q 002900 185 EAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 185 ~~l~d~~~~v~~~al~ll~~i~ 206 (869)
.-|.+.|+.+...|+.+|.++.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL 27 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVL 27 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHH
Confidence 3445555556656655555443
No 235
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=29.57 E-value=1.1e+02 Score=31.51 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=77.7
Q ss_pred HHhhcCCCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC--CChhhHHHHHHHHHHHhcC
Q 002900 76 TKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQIERYLKQAIVD 152 (869)
Q Consensus 76 ~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I--~~~~~~~~l~~~i~~~l~d 152 (869)
-.+++++-++.|-++-.++...... .+..+-.+-.+..+. +.=+.+=++|-+.++.+ ..+. +...+.+...+
T Consensus 52 ~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~~~~~----~~~~l~~W~~s 126 (208)
T cd07064 52 LELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLADYPE----FEPVMDEWSTD 126 (208)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHhCChh----HHHHHHHHHcC
Confidence 3456777667666666555433222 122211122233331 22234445666666543 2222 35567777799
Q ss_pred CChHHHHHHHHHHhhhcc-cChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhh
Q 002900 153 KNPVVASAALVSGIHLLQ-TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSL 220 (869)
Q Consensus 153 ~~p~VRk~A~lal~~L~~-~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l 220 (869)
.+.++||.|+++.++..+ .+++.+.. -+..++.|++..|+=+.-=+|-++.+.|+..+...+..-
T Consensus 127 ~~~W~rR~ai~~~l~~~~~~~~~~l~~---~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~ 192 (208)
T cd07064 127 ENFWLRRTAILHQLKYKEKTDTDLLFE---IILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAH 192 (208)
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHH---HHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 999999999998877544 24444433 344556665555554444467889888988887776643
No 236
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=29.51 E-value=7e+02 Score=30.38 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=27.7
Q ss_pred HhhcCCCCHHHHhHHHHHhcc----CCChhhHHHHHHHHHHHh-cCCChHHHHHHHHHHhhhc
Q 002900 112 MKDMTSKTDMYRANAIRVLCR----ITDGTLLTQIERYLKQAI-VDKNPVVASAALVSGIHLL 169 (869)
Q Consensus 112 ~kDl~s~n~~vr~lALr~L~~----I~~~~~~~~l~~~i~~~l-~d~~p~VRk~A~lal~~L~ 169 (869)
..-+.+.+..++-.+|+.+.. |..+.+-+.|.+.|+.+. .+.+.+||-.++.|+..+.
T Consensus 395 ~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 395 YRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 334445555555555555443 233334444555554443 2344555555555555544
No 237
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=29.25 E-value=62 Score=23.97 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHhhhcccChHHHH--HHHHHHHHHhcCCChhHHHHHHHH
Q 002900 164 SGIHLLQTTPEIVK--RWSNEVQEAVQSRAALVQFHALAL 201 (869)
Q Consensus 164 al~~L~~~~pe~v~--~~~~~l~~~l~d~~~~v~~~al~l 201 (869)
|+..+...+|+++. .+.+.+...+.|.++.|--+|+-+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34556667777764 677888888999999998888755
No 238
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=29.10 E-value=3.3e+02 Score=25.94 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhccccCc----hHHHHHHHHHhhcCCCHHHHHHHHH-HHHHhCCC
Q 002900 472 ATVRAAAVSTLAKFGAMVDAL----KPRVFVLLRRCLYDGDDEVRDRATL-YLNTVGSD 525 (869)
Q Consensus 472 ~~vr~~~ltal~Kl~~~~~~l----~~~i~~ll~~~~~d~d~evrdRA~~-yl~ll~~~ 525 (869)
......++..+.+.+.+.|++ ....+.++..|....++++++.|.. |-..|+.+
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~~ 125 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQLP 125 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCST
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCh
Confidence 344557788888888888864 3456677777888779999999995 66667554
No 239
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=28.92 E-value=6.4e+02 Score=25.76 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHH
Q 002900 141 QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180 (869)
Q Consensus 141 ~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~ 180 (869)
.+...+..++.|++-+|+|+..=++--+.+.+|+.|..|+
T Consensus 150 ~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 150 LLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3333444444444444444444444444444444444444
No 240
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=28.92 E-value=9.4e+02 Score=27.66 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=90.4
Q ss_pred hhhHHHHHhhc-CCCccchhHHHHHHHHhCCCc---------chhHhhhhHHH--hhcCCCCH----HHHhHHHHHhccC
Q 002900 70 EVFFAVTKLFQ-SRDIGLRRMVYLMIKELSPSA---------DEVIIVTSSLM--KDMTSKTD----MYRANAIRVLCRI 133 (869)
Q Consensus 70 ~lf~~v~kl~~-s~d~~lKrl~Yl~l~~~~~~~---------d~~~Lvinsl~--kDl~s~n~----~vr~lALr~L~~I 133 (869)
.+-|..+++++ +.++..+-|++-.+.-.++.. ....=.+|-++ ||++++.+ .-|+.-|-++-..
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 34455667774 466777777776663333321 11222344444 47777654 5567777777778
Q ss_pred CChhhH-----HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH----HHHHHHHHHhc-----CCChhHHHHHH
Q 002900 134 TDGTLL-----TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK----RWSNEVQEAVQ-----SRAALVQFHAL 199 (869)
Q Consensus 134 ~~~~~~-----~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~----~~~~~l~~~l~-----d~~~~v~~~al 199 (869)
++.+|- +.+...+..++.+.+...--.+++++..+.+.+.-.+. .+++.+.+++. |.|..++.+++
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 888753 23667777888888888888999999999887765443 68888888774 34567788888
Q ss_pred HHHHHHh
Q 002900 200 ALLHQIR 206 (869)
Q Consensus 200 ~ll~~i~ 206 (869)
++|-.+.
T Consensus 383 sALRnl~ 389 (604)
T KOG4500|consen 383 SALRNLM 389 (604)
T ss_pred HHHHhcc
Confidence 8876553
No 241
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.39 E-value=3.1e+02 Score=26.39 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh-----HHH-HHHHHHHHHHhcC-CChhHHHHHHHHHH
Q 002900 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-----EIV-KRWSNEVQEAVQS-RAALVQFHALALLH 203 (869)
Q Consensus 140 ~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p-----e~v-~~~~~~l~~~l~d-~~~~v~~~al~ll~ 203 (869)
...++.|++-+.|++|.|.-.|+.-+--+.+... ++. ++|++++..++.+ .++.|.--.+.++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3455566666667777666665543333332221 222 2566776666665 34445444444443
No 242
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=28.03 E-value=6.8e+02 Score=27.85 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=75.7
Q ss_pred chhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC----cchhHhhhhHHHhhcCCCCHHHH---hHHHHHhc---cCCCh
Q 002900 67 EATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS----ADEVIIVTSSLMKDMTSKTDMYR---ANAIRVLC---RITDG 136 (869)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~----~d~~~Lvinsl~kDl~s~n~~vr---~lALr~L~---~I~~~ 136 (869)
|...+|-.|++.+-+.+...|+.++--+..=... |-.+..+...+..-+.. |-..- ...+++|- ++.-.
T Consensus 175 Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 175 ELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchH
Confidence 3344455555555555555555544433211111 22233444444444432 22111 22222222 24444
Q ss_pred hhHHHHHHHHHHHhc----------CCChHHHHHHHHHHhhhcc----cChHHHHHHHHHHHHHhcCCC-h-hHHHHHHH
Q 002900 137 TLLTQIERYLKQAIV----------DKNPVVASAALVSGIHLLQ----TTPEIVKRWSNEVQEAVQSRA-A-LVQFHALA 200 (869)
Q Consensus 137 ~~~~~l~~~i~~~l~----------d~~p~VRk~A~lal~~L~~----~~pe~v~~~~~~l~~~l~d~~-~-~v~~~al~ 200 (869)
--+..+++.+..|+. +.+..+|..|+-.+.++++ .+|.+-.+....+.+.+.|.. + ...|.|+.
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~ 333 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV 333 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence 456668888888873 3446899999999887765 456776778877777766543 3 45777777
Q ss_pred HHHHHh
Q 002900 201 LLHQIR 206 (869)
Q Consensus 201 ll~~i~ 206 (869)
-|..+.
T Consensus 334 GL~~lG 339 (343)
T cd08050 334 GLSALG 339 (343)
T ss_pred HHHHhC
Confidence 776654
No 243
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=28.02 E-value=9.2e+02 Score=27.30 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=44.8
Q ss_pred ChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhh
Q 002900 285 TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFM 355 (869)
Q Consensus 285 ~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~ 355 (869)
..+....|...+.+|..- -|.+.-.|+.+-- .+..|.|..||+.|+.=|-..|..++..++...|...+
T Consensus 37 ~~k~k~lasq~ip~~fk~-fp~la~~a~da~~-d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKH-FPSLADEAIDAQL-DLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLL 105 (460)
T ss_pred chHHHHHHHHHHHHHHhh-CchhhhHHHHhhh-ccccccchhhHHHHHhccchhccCchhhhhHHHHHHHH
Confidence 455556666666666531 2222222333210 67899999999999999999998888877666555443
No 244
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=27.75 E-value=1.7e+03 Score=30.19 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=42.1
Q ss_pred ccCCCCCHHHHHHHHH---HhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhh
Q 002900 318 SLISDQNRSIATLAIT---TLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (869)
Q Consensus 318 ~~L~d~d~sI~~~aL~---lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~ 394 (869)
.++..+++.++..+-. .++..-+.-.=..|+..|..++.+-...=...++.-+..|+.++|.....+-.++..+|..
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~ 521 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDY 521 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4556777766644443 3444343323345666666655333332334567777777777777666666666666654
Q ss_pred c
Q 002900 395 E 395 (869)
Q Consensus 395 ~ 395 (869)
-
T Consensus 522 l 522 (1426)
T PF14631_consen 522 L 522 (1426)
T ss_dssp G
T ss_pred H
Confidence 3
No 245
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.37 E-value=1.6e+03 Score=29.47 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHH
Q 002900 138 LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (869)
Q Consensus 138 ~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~ 186 (869)
-+..+...|...|...+..+|-+|++|+.++ ++++.+.++.++...
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~---n~~v~~~LleeL~~~ 238 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSI---NLNVYRTLLEELQSY 238 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCC---CHHHHHHHHHHHHHH
Confidence 3567888888888999999999999998885 555555555554443
No 246
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.07 E-value=7.8e+02 Score=25.78 Aligned_cols=140 Identities=12% Similarity=0.151 Sum_probs=70.9
Q ss_pred HhcCCChHHHHHHHHHHhhhcccChHHH-------H------HHHHHHHHHhcCCChhHHHHHHHHHHHHh--hc--Chh
Q 002900 149 AIVDKNPVVASAALVSGIHLLQTTPEIV-------K------RWSNEVQEAVQSRAALVQFHALALLHQIR--QN--DRL 211 (869)
Q Consensus 149 ~l~d~~p~VRk~A~lal~~L~~~~pe~v-------~------~~~~~l~~~l~d~~~~v~~~al~ll~~i~--~~--d~~ 211 (869)
++.|.+|.|.|.|+.|+..+|+..-..+ . .+-+.+...+.+.+++|-.+|+-.+..+- +. ...
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4678999999999999998886422221 2 23355555667778888888876654432 11 000
Q ss_pred HHHHH--HHh--hccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCC--hHHHHHHHHHHHhccCCC
Q 002900 212 AVSKL--VTS--LTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKA--EMVIFEAARAITELNGVT 285 (869)
Q Consensus 212 ~~~~l--i~~--l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~--~aV~~ea~~~i~~l~~~~ 285 (869)
.-... -.+ ++.-+.-.|+....- +.. +...+++.|..++.+.. +.++..+++++..+-..-
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~---Le~----------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R 147 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQ---LEA----------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR 147 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHH---HHH----------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS
T ss_pred CccccccccCCCHHHcCCCCCcCCHHH---HHH----------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh
Confidence 00000 001 110000112221111 110 13456677777776644 556666666666553223
Q ss_pred hHhHhhHHHHHHHHHc
Q 002900 286 NRELTPAITVLQLFLS 301 (869)
Q Consensus 286 ~~~~~~a~~~L~~~L~ 301 (869)
++....++..|..|-.
T Consensus 148 P~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 148 PQFMSRILPALLSFNP 163 (239)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCc
Confidence 5556666666666643
No 247
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=1.7e+03 Score=29.70 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=61.1
Q ss_pred hhcCCCCHHHHhHHHHHhccCCChhh-------HHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHH-
Q 002900 113 KDMTSKTDMYRANAIRVLCRITDGTL-------LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQ- 184 (869)
Q Consensus 113 kDl~s~n~~vr~lALr~L~~I~~~~~-------~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~- 184 (869)
|=|.-.|+.-+.-||..|+...++.- .+.....+.+++.|.++.||...--.+.++..+-...+-.|+..+.
T Consensus 48 kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~ 127 (1312)
T KOG0803|consen 48 KKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIP 127 (1312)
T ss_pred HHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Confidence 33444678888999999998776543 4455667888999999999998888877766443333323333222
Q ss_pred ---HHhcCCChhHHHHHHHHHHHHhh
Q 002900 185 ---EAVQSRAALVQFHALALLHQIRQ 207 (869)
Q Consensus 185 ---~~l~d~~~~v~~~al~ll~~i~~ 207 (869)
-..+|.+..|...|...+-..-.
T Consensus 128 ~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 128 PWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hhhheecccchHHHHHHHHHHHhhcC
Confidence 22356666777777666555443
No 248
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.52 E-value=1.3e+03 Score=28.04 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=45.7
Q ss_pred HHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCC--ChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 111 LMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDK--NPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 111 l~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~--~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
...||.-.|..+-..-..+|+.+.+.+-++.....+...-..+ +-...++-+.++.-.-+.+-++++.+++...+
T Consensus 349 ~~~~l~~En~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~e~~ly~lg~a~hp~ee~i~~l~~k~~~ 425 (896)
T KOG4337|consen 349 WEAALQYENDEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLHEQLLYWLGSADHPSEETIATLLNKRCE 425 (896)
T ss_pred HHHHHHhhhhhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHHHHHHHHhhccCCCcHHHHHHHHHHHhh
Confidence 3446666788888888888888888888777765554332222 13444555555555554455566555554443
No 249
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=25.50 E-value=1.2e+03 Score=27.58 Aligned_cols=166 Identities=14% Similarity=0.208 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHhhccCChhhHHHHHHHHHH-hh--h--------hccHHHHHHHHHHHHHHH---hhCCccHHHHHH
Q 002900 321 SDQNRSIATLAITTLLKTGNESSVDRLMKQITN-FM--S--------DIADEFKIVVVEAIRSLC---LKFPLKYRSLMN 386 (869)
Q Consensus 321 ~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~-y~--~--------~~~~~~r~~~v~aI~~la---~k~~~~~~~~v~ 386 (869)
.|++.+|...|-++|=+++..=+=..+++.|.. |+ . ..+..+|..++.-+.+-. ..||.. +.
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~----~~ 322 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNI----LQ 322 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccH----HH
Confidence 577788999999999888766443456666665 55 2 456678877777666542 233333 33
Q ss_pred HHHHHHhhc-CCcchHHHHHHHH---HHHHHhCCch-----HHHHHHHHHHhhhc-------cCchhHHHHHHhhhcCCC
Q 002900 387 FLSNILREE-GGFEYKKAIVDSI---VILIRDIPDA-----KENGLLHLCEFIED-------CEFTYLSTQILHFLGTEG 450 (869)
Q Consensus 387 ~ll~ll~~~-g~~~~~~~iv~~i---~~ii~~~p~~-----~~~~l~~L~~~l~~-------~~~~~~~~~~l~ilGE~~ 450 (869)
....-+... ....++.....++ .++++..+.. +..+...+...+++ ....+.+..+--.||.-+
T Consensus 323 i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~ 402 (501)
T PF13001_consen 323 IVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLA 402 (501)
T ss_pred HHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence 333333322 1233555556666 5666554422 22333333333420 012223333333455544
Q ss_pred CCCC----ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc
Q 002900 451 PKTS----DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (869)
Q Consensus 451 ~~~~----~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~ 490 (869)
...+ +-..++..++..+..|.+++|.++-.|+.-+...+.
T Consensus 403 ~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 403 KRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred ccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 4332 345778888888888899999999888887776654
No 250
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=25.31 E-value=1.6e+02 Score=28.64 Aligned_cols=15 Identities=47% Similarity=0.273 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHhhhc
Q 002900 155 PVVASAALVSGIHLL 169 (869)
Q Consensus 155 p~VRk~A~lal~~L~ 169 (869)
+-||..|.+++.|+.
T Consensus 19 ~~~r~~a~v~l~k~l 33 (157)
T PF11701_consen 19 EEVRSHALVILSKLL 33 (157)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 334444444444444
No 251
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=9e+02 Score=28.08 Aligned_cols=111 Identities=14% Similarity=0.298 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHH
Q 002900 269 MVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLM 348 (869)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il 348 (869)
...|.+++-|+.. +.+....+...|...++.+-..+||++|..+...++..+ -.|.+-+ +|.+..+
T Consensus 25 p~~~k~lkkiv~~---sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~--~FR~lii---------~n~~efL 90 (661)
T KOG2374|consen 25 PRLLKALKKIVRY---SDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSK--LFRTLII---------ENLDEFL 90 (661)
T ss_pred hHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhH--HHHHHHH---------hCHHHHH
Confidence 4566777777765 234466777777777777778899999988754333332 1222221 3444444
Q ss_pred HHHHHhhh--------hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhh
Q 002900 349 KQITNFMS--------DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (869)
Q Consensus 349 ~eL~~y~~--------~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~ 394 (869)
+-...+=+ .....+|.+++..|..|.+||...+..+ .....+|+.
T Consensus 91 eL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~yk~l-~lg~~~Lk~ 143 (661)
T KOG2374|consen 91 ELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFHYKEL-RLGFDYLKN 143 (661)
T ss_pred HHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHhc
Confidence 43333211 2345789999999999999998766543 334444444
No 252
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.10 E-value=6.1e+02 Score=26.59 Aligned_cols=51 Identities=6% Similarity=0.205 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhhc--cHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHh
Q 002900 343 SVDRLMKQITNFMSDI--ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILR 393 (869)
Q Consensus 343 nv~~Il~eL~~y~~~~--~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~ 393 (869)
....+++.|..++.+. +...-..++.+++.++.+=|.-...++..++.+-.
T Consensus 111 Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 111 EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNP 163 (239)
T ss_dssp HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 3345666666655433 34555566666666666666666666666655533
No 253
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=24.79 E-value=1.7e+02 Score=26.41 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhCCccHHHHHHH--HHHHHhh----cCCcchHHHHHHHHHHHHHhCCchHHHH
Q 002900 362 FKIVVVEAIRSLCLKFPLKYRSLMNF--LSNILRE----EGGFEYKKAIVDSIVILIRDIPDAKENG 422 (869)
Q Consensus 362 ~r~~~v~aI~~la~k~~~~~~~~v~~--ll~ll~~----~g~~~~~~~iv~~i~~ii~~~p~~~~~~ 422 (869)
||..+|+-|+.+|-+.+...+.+... +--+|+. ....-.++-++-.|+.+...+|+-|+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 78999999999998877665544321 2222221 1222244555557777777777666543
No 254
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.31 E-value=5.6e+02 Score=28.88 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=62.0
Q ss_pred hhHHHHHhhcCCCccchhHHHHHHHHhCC-CcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC----C---hh-hHHH
Q 002900 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSP-SADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT----D---GT-LLTQ 141 (869)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~-~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~----~---~~-~~~~ 141 (869)
+--.+.|...-++-..+-=+-|-+|-... .++..-=++.+|+|=|++.||.|.=+||..+..+. . .+ -...
T Consensus 9 ~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~ 88 (462)
T KOG2199|consen 9 FEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRD 88 (462)
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhh
Confidence 33344455444444444444455555443 37778888999999999999999988888776421 1 11 1223
Q ss_pred HHHHHHHHhc-CCChHHHHHHHHHHhhhcccChHHHHHHHHHHH
Q 002900 142 IERYLKQAIV-DKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQ 184 (869)
Q Consensus 142 l~~~i~~~l~-d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~ 184 (869)
....++.++. ..+|-|+++- ..++.+|.++..
T Consensus 89 F~~el~al~~~~~h~kV~~k~-----------~~lv~eWsee~K 121 (462)
T KOG2199|consen 89 FTTELRALIESKAHPKVCEKM-----------RDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHHHHhhcccHHHHHHH-----------HHHHHHHHHHhc
Confidence 4445555556 4567776652 245677887443
No 255
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=23.45 E-value=3.9e+02 Score=27.33 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCCCCCCCCceEEEEEecCCCCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCccccccc--cchHH
Q 002900 688 LRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGV--SNFRN 765 (869)
Q Consensus 688 ~~~L~~~~~~~~~v~~~~~~~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~--~~F~~ 765 (869)
...+.|++..++.|.|..-.. -|...|-|.=||.+.- |.+. +.. .+|..
T Consensus 51 ~g~Iep~stv~VeVilq~l~e-EpapdfKCrdKFLiqs----------------~~~~------------~~l~g~d~ad 101 (242)
T COG5066 51 MGLIEPMSTVEVEVILQGLTE-EPAPDFKCRDKFLIQS----------------YRFD------------WRLSGSDFAD 101 (242)
T ss_pred CceeccCCeeEEEEEeecccc-CCCCCccccceeEEEE----------------eccC------------hhhccchHHH
Confidence 447789999888888754322 2556788888887742 2221 122 48999
Q ss_pred HhhhcCCCceeEEEEeC
Q 002900 766 AWESIGPDFERVDEYGL 782 (869)
Q Consensus 766 ~W~~l~~~~e~~~~~~l 782 (869)
.|.+++...-|+.++..
T Consensus 102 ~wt~~sk~~i~~rkIrc 118 (242)
T COG5066 102 HWTSSSKKPIWTRKIRC 118 (242)
T ss_pred HHHhhccccchhhheeE
Confidence 99999854445555544
No 256
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=23.38 E-value=5.9e+02 Score=31.87 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=50.8
Q ss_pred ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHh-hCCccHHHHHHHHHHHHhhcC
Q 002900 318 SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCL-KFPLKYRSLMNFLSNILREEG 396 (869)
Q Consensus 318 ~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~-k~~~~~~~~v~~ll~ll~~~g 396 (869)
..+.|.+-.||...+.++.+ .+.........+++.+|. -||..+...+.-|...|+. +
T Consensus 77 ~i~p~e~v~IR~~l~~lii~--------------------s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~-~ 135 (947)
T COG5657 77 SILPDENVLIRDELFSLIIS--------------------SSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSE-K 135 (947)
T ss_pred CCCCccchHHHHHHHHHHHc--------------------ccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcc-c
Confidence 34555555778877777644 233344456677777776 7899999999999999885 6
Q ss_pred CcchHHHHHHHHHHHHHh
Q 002900 397 GFEYKKAIVDSIVILIRD 414 (869)
Q Consensus 397 ~~~~~~~iv~~i~~ii~~ 414 (869)
+++....++.++-+|+++
T Consensus 136 D~~tn~~~L~~~h~Ifk~ 153 (947)
T COG5657 136 DMVTNENSLRVLHHIFKR 153 (947)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 665555555555555543
No 257
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=23.36 E-value=2.5e+02 Score=27.02 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=23.6
Q ss_pred EeCCcEEEEEEeecCCCccccccEEEEEec
Q 002900 645 IFDRHVVFQYNCTNTIPEQLLENVTVIVDA 674 (869)
Q Consensus 645 ~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~ 674 (869)
.+.+.+++++.++|+. +.+++++.++++-
T Consensus 59 ~~~~~~~v~g~V~N~g-~~~i~~c~i~~~l 87 (149)
T PF09624_consen 59 QYSESFYVDGTVTNTG-KFTIKKCKITVKL 87 (149)
T ss_pred eeccEEEEEEEEEECC-CCEeeEEEEEEEE
Confidence 3567899999999998 5789998887654
No 258
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.28 E-value=1.2e+03 Score=26.98 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=50.6
Q ss_pred HHHHHHHhhccCChhhHHHHHHH-HHHhhhhccHHHHHHHHHHHHHHHhhCCc---c--HHHHHHHHHHHHhhcCCcchH
Q 002900 328 ATLAITTLLKTGNESSVDRLMKQ-ITNFMSDIADEFKIVVVEAIRSLCLKFPL---K--YRSLMNFLSNILREEGGFEYK 401 (869)
Q Consensus 328 ~~~aL~lL~~l~~e~nv~~Il~e-L~~y~~~~~~~~r~~~v~aI~~la~k~~~---~--~~~~v~~ll~ll~~~g~~~~~ 401 (869)
..+||-.++....+.+...+... |..|+++...--|..+.--|..||..... . ...+.+.|.++|... ...+=
T Consensus 107 aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~-~~~~Y 185 (441)
T PF12054_consen 107 AAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP-EPPYY 185 (441)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC-CCCCH
Confidence 35666677777777777777775 77777766655565666666677664432 1 256677778877743 22222
Q ss_pred HHHHHHHHHH
Q 002900 402 KAIVDSIVIL 411 (869)
Q Consensus 402 ~~iv~~i~~i 411 (869)
++++..+..+
T Consensus 186 ~El~~~l~~l 195 (441)
T PF12054_consen 186 DELVPSLKRL 195 (441)
T ss_pred HHHHHHHHHH
Confidence 5555444433
No 259
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.48 E-value=1.2e+02 Score=21.23 Aligned_cols=28 Identities=14% Similarity=-0.054 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhc
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLL 169 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~ 169 (869)
.++.+.+++.+.++.+++.|+.++..|.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3455666667778888888888877653
No 260
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=1.5e+03 Score=27.67 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=52.2
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCC
Q 002900 460 IRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDG 526 (869)
Q Consensus 460 l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~~ 526 (869)
+|.+-.-+..-.+.+|-+.=-|+.-++..+|.+ .|...|.+.+.|.|.||---|.+-+.|...+.
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~naIfamGLiGAGT 706 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGT 706 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHHHHHhccccCCc
Confidence 454444444567888988888888888888866 68999999999999999999999888887664
No 261
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.33 E-value=1.5e+02 Score=29.30 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccC
Q 002900 268 EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTG 339 (869)
Q Consensus 268 ~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~ 339 (869)
..+.++|++|+-.+-+... .+..++..++ .+...+ .+|..++..+|..++++|..+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~--------G~~~v~~~~~-~v~~i~------~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKY--------GLEAVLSHPD-SVNLIA------LSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHH--------HHHHHHCSSS-HHHHHH------HT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHH--------HHHHHHcCcH-HHHHHH------HHHCCCCHHHHHHHHHHHHHHH
Confidence 3567777777766533211 1233444333 222222 4467788899999999987765
No 262
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=22.30 E-value=8.4e+02 Score=25.75 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccH---HH-HHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhc--CCcc
Q 002900 326 SIATLAITTLLKTGNESSVDRLMKQITNFMSDIAD---EF-KIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE--GGFE 399 (869)
Q Consensus 326 sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~---~~-r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~--g~~~ 399 (869)
...+.-++.+-+=++.+.+..+++++..-..+-+. .+ ...+++++..+..|--+-.-.++.-..+.|+.- .+-+
T Consensus 12 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~~~~~ 91 (253)
T PF09090_consen 12 ALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELEAESEE 91 (253)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-TSSHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccCChH
Confidence 34444444444445566666666655543322111 23 344666776666653333333444433333321 2223
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCC
Q 002900 400 YKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEG 450 (869)
Q Consensus 400 ~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~ 450 (869)
-+..+++.+..+..++|+.-.-++.+|+++ .--.....+-|++++++
T Consensus 92 ~q~~il~~v~~~W~~~~q~~~li~dkll~~----~ii~~~~Vv~w~f~~~~ 138 (253)
T PF09090_consen 92 AQFWILDAVFRFWKNNPQMGFLIIDKLLNY----GIISPSAVVNWVFSPEN 138 (253)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT----TSS-HHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHhcCCceehHHHHHHHhc----CCCCHHHHHHHHcCccc
Confidence 456788888888999998888888888765 11123345679998886
No 263
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.54 E-value=1.7e+02 Score=21.07 Aligned_cols=29 Identities=17% Similarity=-0.010 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 002900 178 RWSNEVQEAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 178 ~~~~~l~~~l~d~~~~v~~~al~ll~~i~ 206 (869)
..++.+.+++.+.++.++.+|+.+|..+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46778888999999999999999987765
No 264
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.48 E-value=3.9e+02 Score=23.51 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=45.0
Q ss_pred cCCChHHHHHHHHHHhhhccc----ChHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHhhcChhHHHH
Q 002900 151 VDKNPVVASAALVSGIHLLQT----TPEIVKRWSNEVQEAVQSR--AALVQFHALALLHQIRQNDRLAVSK 215 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~~----~pe~v~~~~~~l~~~l~d~--~~~v~~~al~ll~~i~~~d~~~~~~ 215 (869)
.+.+..+|..|+--+.++++. +|.+-.+....+.+.+.|+ ...+.|-|+.-|..+.+ .++..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~---~~vr~ 83 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP---EAVRA 83 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 356788999999998887764 4666668888888877754 34788888888877743 45553
No 265
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=21.45 E-value=2.2e+02 Score=26.02 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=35.0
Q ss_pred EEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCceEEEEEecCCCCCcccccceeEEEEEee
Q 002900 651 VFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKE 725 (869)
Q Consensus 651 vl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~~~~v~~~~~~~~~~~~~f~~~l~f~v~~ 725 (869)
...+.+.|++.+ =..+++.+...+ ++++....+.-+++||+.....+.+..+......+ +..+.|.+.+
T Consensus 34 ~Y~lkl~Nkt~~--~~~~~i~~~g~~--~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~~~--~~~i~f~v~~ 102 (118)
T PF11614_consen 34 QYTLKLTNKTNQ--PRTYTISVEGLP--GAELQGPENTITVPPGETREVPVFVTAPPDALKSG--STPITFTVTD 102 (118)
T ss_dssp EEEEEEEE-SSS---EEEEEEEES-S--S-EE-ES--EEEE-TT-EEEEEEEEEE-GGG-SSS--EEEEEEEEEE
T ss_pred EEEEEEEECCCC--CEEEEEEEecCC--CeEEECCCcceEECCCCEEEEEEEEEECHHHccCC--CeeEEEEEEE
Confidence 456778898743 334777776544 37763332334788999877776666654332212 2367788864
No 266
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.43 E-value=2.3e+02 Score=36.05 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCCCHHHHhHHHHHhccC--CChh--hHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh--HHH----HHHHHHHHH
Q 002900 116 TSKTDMYRANAIRVLCRI--TDGT--LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP--EIV----KRWSNEVQE 185 (869)
Q Consensus 116 ~s~n~~vr~lALr~L~~I--~~~~--~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p--e~v----~~~~~~l~~ 185 (869)
.|-.|.||+-.+..||-= ..|+ +-....+++-=.|.|++.-||++.+-++.+||...- +.+ .+|-+++.+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 567899999999888852 2233 223357788888899999999999999999997632 222 377788888
Q ss_pred Hh-cCCChhHHHHHHHHHHHH
Q 002900 186 AV-QSRAALVQFHALALLHQI 205 (869)
Q Consensus 186 ~l-~d~~~~v~~~al~ll~~i 205 (869)
+. .|.+++|..+++.++...
T Consensus 377 Madrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHH
Confidence 87 345667777776665444
No 267
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.23 E-value=1e+03 Score=26.94 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=46.0
Q ss_pred ccCCCCCHHHHHHHHHHh----hccCChh---hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccH
Q 002900 318 SLISDQNRSIATLAITTL----LKTGNES---SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKY 381 (869)
Q Consensus 318 ~~L~d~d~sI~~~aL~lL----~~l~~e~---nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~ 381 (869)
.++.|.+.++|.....++ +.+|-+. .+.-++..+..-|+.+..+.+.+...-+..+.++||+..
T Consensus 106 ~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 106 ELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred hhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 446677777776555543 4456555 444566666666788899999999999999999998753
No 268
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=21.05 E-value=9.8e+02 Score=25.16 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=54.2
Q ss_pred cCCCCHHHHhHHHHHhccCCChh-hHHH--------HHHHHHHHhcCC---ChHHHHHHHHHHhhhc----cc--ChHHH
Q 002900 115 MTSKTDMYRANAIRVLCRITDGT-LLTQ--------IERYLKQAIVDK---NPVVASAALVSGIHLL----QT--TPEIV 176 (869)
Q Consensus 115 l~s~n~~vr~lALr~L~~I~~~~-~~~~--------l~~~i~~~l~d~---~p~VRk~A~lal~~L~----~~--~pe~v 176 (869)
..+.++..+-+++|++||+-... .... +...+....... +.-+|-+++-.++.+. +. ..+.-
T Consensus 119 ~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~ 198 (268)
T PF08324_consen 119 SSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ 198 (268)
T ss_dssp TTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH
T ss_pred cCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 34578899999999999965433 2222 222332222222 6778877777666431 11 22333
Q ss_pred HHHHHHHHHHhc-C-CChhHHHHHHHHHHHHhhc
Q 002900 177 KRWSNEVQEAVQ-S-RAALVQFHALALLHQIRQN 208 (869)
Q Consensus 177 ~~~~~~l~~~l~-d-~~~~v~~~al~ll~~i~~~ 208 (869)
.+.+..+.+.+. . .|+-+++-++.++..+...
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~ 232 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLLSS 232 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence 345555555332 2 4778888888888777644
No 269
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.04 E-value=1.6e+03 Score=27.75 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=70.8
Q ss_pred HHHhhcCCCCHHHHhHHHHHhccC--CChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHh
Q 002900 110 SLMKDMTSKTDMYRANAIRVLCRI--TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (869)
Q Consensus 110 sl~kDl~s~n~~vr~lALr~L~~I--~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l 187 (869)
.|---..++=+.++-.||.++..+ .-|+-=..|...+.+.|.|+..-+..+|..-+..|..++|..---.+.++..++
T Consensus 308 vLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIer~~ 387 (988)
T KOG2038|consen 308 VLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIERLA 387 (988)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHHHHH
Confidence 333333456678899999988774 346666778888889999999999999999999999999975434556666655
Q ss_pred cCCC--hhHHHHHHHHHHHHh
Q 002900 188 QSRA--ALVQFHALALLHQIR 206 (869)
Q Consensus 188 ~d~~--~~v~~~al~ll~~i~ 206 (869)
-.++ ....|+|+..|..+.
T Consensus 388 FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 388 FRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred cccCccccceeehhhhhhhhH
Confidence 4433 356778888887765
No 270
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=20.79 E-value=4.2e+02 Score=24.56 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHhhcCh
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSR-AALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~-~~~v~~~al~ll~~i~~~d~ 210 (869)
+...|+++-++...-...+-+-.+.......|+.+..|...+...|.+. +..+++-++.+++.+-.+.+
T Consensus 3 ~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~ 72 (127)
T smart00273 3 LEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGS 72 (127)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCC
Confidence 4556777777655444444444455444556566777777777777776 78899999999887766543
No 271
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=20.21 E-value=1.1e+03 Score=25.25 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccCChh---hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhC-CccHHHHHHHHHHHHhhcCCcch
Q 002900 325 RSIATLAITTLLKTGNES---SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF-PLKYRSLMNFLSNILREEGGFEY 400 (869)
Q Consensus 325 ~sI~~~aL~lL~~l~~e~---nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~-~~~~~~~v~~ll~ll~~~g~~~~ 400 (869)
..++..| +.|-.+|... ++.+++....+---...++|-..++..|+ +-| |.-...++.+|+.+|.... --+
T Consensus 130 ~~~~~~A-~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~f~P~~~~~~l~~Ll~lL~n~~-~w~ 204 (262)
T PF14225_consen 130 QECIEIA-EALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EAFFPDHEFQILTFLLGLLENGP-PWL 204 (262)
T ss_pred HHHHHHH-HHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHhCchhHHHHHHHHHHHHhCCc-HHH
Confidence 3344444 4455566554 44455554433111335567777766665 455 6667788999999998543 346
Q ss_pred HHHHHHHHHHHHHh
Q 002900 401 KKAIVDSIVILIRD 414 (869)
Q Consensus 401 ~~~iv~~i~~ii~~ 414 (869)
+..+...++-++..
T Consensus 205 ~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 205 RRKTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHHHhcc
Confidence 77777666666653
No 272
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=20.21 E-value=1.8e+03 Score=30.68 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHhhCCccHH--------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh
Q 002900 359 ADEFKIVVVEAIRSLCLKFPLKYR--------SLMNFLSNILREEGGFEYKKAIVDSIVILIRD 414 (869)
Q Consensus 359 ~~~~r~~~v~aI~~la~k~~~~~~--------~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~ 414 (869)
+.+++.-+++.+..+|.||-+..+ .+++-+..++....+.++++-+++.+.+++..
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 345677777777777777765432 23333444444455556666667766666653
Done!