Query 002900
Match_columns 869
No_of_seqs 228 out of 1331
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:56:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 3.8E-78 1.3E-82 720.4 34.6 513 28-554 35-616 (621)
2 1w63_A Adapter-related protein 100.0 1.2E-69 4.2E-74 648.9 42.5 499 30-546 36-593 (618)
3 3tjz_B Coatomer subunit gamma; 100.0 8.8E-71 3E-75 602.7 21.7 337 1-342 1-355 (355)
4 2vgl_B AP-2 complex subunit be 100.0 5.7E-68 2E-72 632.1 43.7 492 19-525 4-533 (591)
5 1pzd_A Coatomer gamma subunit; 100.0 4.9E-62 1.7E-66 520.3 30.0 315 547-867 3-322 (322)
6 1r4x_A Gamma1-COP, coatomer ga 100.0 6.1E-60 2.1E-64 490.0 29.7 264 600-867 9-275 (275)
7 3hs8_A Adaptor protein complex 99.9 1.1E-22 3.7E-27 213.8 21.8 222 617-868 39-271 (273)
8 1kyf_A Alpha-adaptin C; protei 99.9 2.1E-20 7.3E-25 194.8 22.8 222 617-868 13-245 (247)
9 1b3u_A Protein (protein phosph 99.6 3.4E-13 1.1E-17 159.1 32.3 450 68-523 85-586 (588)
10 1w63_A Adapter-related protein 99.5 1.6E-12 5.6E-17 154.9 24.9 423 50-478 86-568 (618)
11 2vgl_B AP-2 complex subunit be 99.4 1.1E-11 3.6E-16 147.2 26.0 402 74-525 17-456 (591)
12 1b3u_A Protein (protein phosph 99.4 3.7E-11 1.3E-15 141.5 29.9 406 106-520 10-466 (588)
13 4fdd_A Transportin-1; heat rep 99.4 2.1E-09 7E-14 133.2 41.3 469 45-521 105-696 (852)
14 1oyz_A Hypothetical protein YI 99.3 1.5E-10 5.1E-15 123.5 19.0 247 106-405 23-274 (280)
15 2jdq_A Importin alpha-1 subuni 99.2 2.8E-09 9.4E-14 121.2 30.6 267 106-376 20-348 (450)
16 4fdd_A Transportin-1; heat rep 99.2 1.2E-08 4.1E-13 126.3 37.8 383 74-489 17-473 (852)
17 2z6g_A B-catenin; FULL-length, 99.2 3.5E-09 1.2E-13 129.6 28.5 408 108-522 117-620 (780)
18 1jdh_A Beta-catenin; beta-cate 99.1 5.4E-08 1.9E-12 113.0 35.2 403 107-520 18-526 (529)
19 2bpt_A Importin beta-1 subunit 99.1 9.9E-08 3.4E-12 117.7 38.2 468 46-520 111-707 (861)
20 2z6h_A Catenin beta-1, beta-ca 99.1 7E-08 2.4E-12 115.5 35.0 408 107-525 15-528 (644)
21 4b8j_A Importin subunit alpha- 99.1 2.5E-08 8.6E-13 116.3 30.3 356 106-488 74-497 (528)
22 2z6g_A B-catenin; FULL-length, 99.1 8.3E-09 2.8E-13 126.2 27.0 438 73-524 118-663 (780)
23 1wa5_B Importin alpha subunit; 99.1 3.8E-08 1.3E-12 114.9 31.5 263 109-376 90-413 (530)
24 2g30_A AP-2 complex subunit be 99.1 3.8E-09 1.3E-13 110.0 19.7 208 635-867 42-253 (258)
25 2bpt_A Importin beta-1 subunit 99.1 7.4E-08 2.5E-12 118.8 33.7 422 76-522 10-527 (861)
26 1u6g_C TIP120 protein, CAND1; 99.0 2E-07 6.8E-12 120.0 36.7 445 72-522 8-596 (1230)
27 2vgl_A Adaptor protein complex 99.0 6.7E-09 2.3E-13 123.5 21.3 357 50-415 90-507 (621)
28 1wa5_B Importin alpha subunit; 99.0 5.5E-08 1.9E-12 113.5 28.0 350 143-520 89-506 (530)
29 2jdq_A Importin alpha-1 subuni 99.0 1.2E-07 4.2E-12 107.5 27.6 299 72-376 22-391 (450)
30 1qgr_A Protein (importin beta 99.0 2.3E-06 7.8E-11 105.6 41.1 430 67-522 125-677 (876)
31 3ul1_B Importin subunit alpha- 99.0 5.5E-07 1.9E-11 104.6 33.4 234 142-377 101-389 (510)
32 1u6g_C TIP120 protein, CAND1; 99.0 5.6E-07 1.9E-11 115.8 36.6 451 34-489 13-600 (1230)
33 1qgr_A Protein (importin beta 98.9 1.9E-06 6.4E-11 106.4 38.8 403 117-522 339-869 (876)
34 1oyz_A Hypothetical protein YI 98.9 1.1E-07 3.8E-12 101.1 23.9 251 73-371 26-278 (280)
35 3now_A UNC-45 protein, SD10334 98.9 1.6E-07 5.3E-12 113.2 27.0 171 35-208 255-451 (810)
36 4b8j_A Importin subunit alpha- 98.9 1.1E-06 3.8E-11 102.3 33.6 352 143-522 76-494 (528)
37 2z6h_A Catenin beta-1, beta-ca 98.9 2.3E-06 7.7E-11 102.4 35.1 379 137-522 10-484 (644)
38 3now_A UNC-45 protein, SD10334 98.9 1.8E-06 6E-11 104.1 33.9 371 142-523 291-737 (810)
39 3tpo_A Importin subunit alpha- 98.8 1.5E-06 5.2E-11 101.4 31.3 268 107-376 77-407 (529)
40 1jdh_A Beta-catenin; beta-cate 98.8 2.4E-06 8E-11 99.1 31.6 383 134-523 10-488 (529)
41 3ltm_A Alpha-REP4; protein eng 98.8 2.2E-07 7.4E-12 94.3 20.0 180 107-316 20-199 (211)
42 3ltj_A Alpharep-4; protein eng 98.8 2.6E-07 8.8E-12 93.0 19.4 181 106-316 14-194 (201)
43 1ibr_B P95, importin beta-1 su 98.7 5E-06 1.7E-10 94.2 29.8 93 109-206 4-117 (462)
44 1ibr_B P95, importin beta-1 su 98.6 1.6E-06 5.5E-11 98.4 20.6 357 75-490 6-440 (462)
45 4hxt_A De novo protein OR329; 98.6 1.9E-05 6.4E-10 81.5 26.1 219 108-380 4-246 (252)
46 3ul1_B Importin subunit alpha- 98.6 1E-05 3.5E-10 93.9 26.5 348 143-519 59-473 (510)
47 3ltj_A Alpharep-4; protein eng 98.6 4.4E-06 1.5E-10 83.8 20.4 185 69-282 13-197 (201)
48 3ltm_A Alpha-REP4; protein eng 98.5 4.5E-06 1.6E-10 84.4 20.1 184 71-283 20-203 (211)
49 3tpo_A Importin subunit alpha- 98.4 4.6E-05 1.6E-09 88.7 27.4 344 70-431 76-497 (529)
50 3tjz_B Coatomer subunit gamma; 98.4 1.3E-06 4.6E-11 95.3 12.8 259 50-315 84-348 (355)
51 4db8_A Armadillo-repeat protei 98.4 1E-05 3.5E-10 84.0 17.6 212 109-374 15-250 (252)
52 4hxt_A De novo protein OR329; 98.3 8.8E-05 3E-09 76.4 22.3 209 73-315 5-236 (252)
53 4db8_A Armadillo-repeat protei 98.2 7.5E-05 2.6E-09 77.4 21.2 182 67-282 9-208 (252)
54 1te4_A Conserved protein MTH18 98.1 2.3E-06 8E-11 79.9 5.9 117 71-203 13-129 (131)
55 4db6_A Armadillo repeat protei 98.1 0.00013 4.4E-09 73.3 19.3 181 67-281 9-207 (210)
56 2db0_A 253AA long hypothetical 98.1 0.00025 8.5E-09 68.1 18.2 197 318-519 39-241 (253)
57 4db6_A Armadillo repeat protei 97.9 0.00043 1.5E-08 69.4 18.6 182 140-375 11-209 (210)
58 4ady_A RPN2, 26S proteasome re 97.9 0.00091 3.1E-08 81.0 23.6 270 108-394 394-699 (963)
59 3l6x_A Catenin delta-1; cateni 97.9 0.029 9.9E-07 65.2 35.2 341 143-522 50-474 (584)
60 1xm9_A Plakophilin 1; armadill 97.8 0.0068 2.3E-07 68.9 28.9 101 108-208 4-117 (457)
61 3b2a_A TON_1937, putative unch 97.8 0.00019 6.6E-09 71.9 13.5 180 179-376 34-219 (265)
62 1xm9_A Plakophilin 1; armadill 97.8 0.0035 1.2E-07 71.3 26.1 332 144-522 5-447 (457)
63 2db0_A 253AA long hypothetical 97.7 0.0099 3.4E-07 57.2 22.8 205 143-375 34-246 (253)
64 3opb_A SWI5-dependent HO expre 97.7 0.12 4.1E-06 61.4 37.5 404 116-524 180-729 (778)
65 2qk2_A LP04448P; mini spindles 97.7 0.0005 1.7E-08 71.0 15.6 167 42-208 28-206 (242)
66 1te4_A Conserved protein MTH18 97.6 7.9E-05 2.7E-09 69.3 7.2 111 107-233 13-123 (131)
67 3nmw_A APC variant protein; AR 97.6 0.0052 1.8E-07 67.3 22.5 256 115-421 41-342 (354)
68 1wa5_C Importin alpha RE-expor 97.6 0.029 9.9E-07 69.9 31.5 126 361-487 376-525 (960)
69 4ady_A RPN2, 26S proteasome re 97.5 0.069 2.4E-06 64.8 32.3 179 337-525 536-720 (963)
70 2qk2_A LP04448P; mini spindles 97.5 0.0012 4E-08 68.2 14.8 28 254-281 176-203 (242)
71 3l6x_A Catenin delta-1; cateni 97.5 0.037 1.3E-06 64.3 28.7 137 72-209 50-223 (584)
72 2x19_B Importin-13; nuclear tr 97.5 0.014 4.8E-07 72.7 27.0 156 361-518 422-593 (963)
73 3nmz_A APC variant protein; pr 97.4 0.007 2.4E-07 68.6 20.6 86 122-207 164-272 (458)
74 3opb_A SWI5-dependent HO expre 97.3 0.076 2.6E-06 63.1 27.7 220 255-487 458-728 (778)
75 2qk1_A Protein STU2; STU2P, XM 96.9 0.019 6.4E-07 59.6 16.5 28 254-281 191-218 (249)
76 3nmz_A APC variant protein; pr 96.9 0.11 3.9E-06 58.6 23.8 173 256-449 245-448 (458)
77 1xqr_A HSPBP1 protein; armadil 96.8 0.0071 2.4E-07 64.5 12.4 136 73-208 84-239 (296)
78 2qk1_A Protein STU2; STU2P, XM 96.8 0.022 7.6E-07 59.0 15.7 167 355-522 25-218 (249)
79 3b2a_A TON_1937, putative unch 96.8 0.051 1.8E-06 54.6 16.9 174 142-341 34-219 (265)
80 2x1g_F Cadmus; transport prote 96.8 0.11 3.9E-06 64.6 24.7 154 361-517 436-608 (971)
81 1xqr_A HSPBP1 protein; armadil 96.6 0.024 8.1E-07 60.4 14.2 129 319-449 90-236 (296)
82 1wa5_C Importin alpha RE-expor 96.5 0.57 1.9E-05 58.2 28.9 90 81-170 416-525 (960)
83 3ibv_A Exportin-T; karyopherin 96.5 2.4 8.1E-05 52.6 33.9 104 66-170 3-119 (980)
84 3m1i_C Exportin-1; heat repeat 96.4 0.44 1.5E-05 59.9 26.7 170 321-490 354-572 (1049)
85 3grl_A General vesicular trans 96.2 0.49 1.7E-05 54.9 23.2 139 77-218 29-205 (651)
86 4hat_C Exportin-1; heat repeat 95.8 3.6 0.00012 51.2 30.6 107 102-208 447-570 (1023)
87 1lrv_A LRV, leucine-rich repea 95.3 0.013 4.4E-07 60.5 4.9 180 115-371 59-242 (244)
88 2x19_B Importin-13; nuclear tr 95.2 6.8 0.00023 48.2 30.1 47 125-171 429-479 (963)
89 2x1g_F Cadmus; transport prote 95.0 3.2 0.00011 51.4 26.5 80 124-203 442-531 (971)
90 3nmw_A APC variant protein; AR 95.0 0.57 2E-05 50.9 17.2 200 325-524 98-334 (354)
91 3o2t_A Symplekin; heat repeat, 94.7 4.4 0.00015 44.2 22.8 153 101-279 24-179 (386)
92 3gs3_A Symplekin, LD45768P; he 94.3 5.5 0.00019 41.0 21.8 136 122-279 31-169 (257)
93 3ibv_A Exportin-T; karyopherin 94.3 0.88 3E-05 56.5 18.4 92 117-208 454-567 (980)
94 4ffb_C Protein STU2; tubulin f 94.1 0.58 2E-05 48.8 14.2 131 146-281 14-166 (278)
95 2iw3_A Elongation factor 3A; a 93.9 16 0.00055 44.8 29.3 228 106-341 54-328 (986)
96 4ffb_C Protein STU2; tubulin f 93.4 0.48 1.7E-05 49.4 11.9 165 44-208 24-213 (278)
97 4hat_C Exportin-1; heat repeat 93.3 21 0.00072 44.3 28.5 122 397-518 466-612 (1023)
98 3gjx_A Exportin-1; transport, 92.3 28 0.00095 43.4 27.2 103 106-208 477-596 (1073)
99 1lsh_A Lipovitellin (LV-1N, LV 91.5 1.2 4.3E-05 55.6 14.0 125 82-207 407-543 (1056)
100 3u0r_A Apoptosis inhibitor 5; 91.4 5.1 0.00018 44.6 16.9 120 395-519 39-158 (507)
101 3tt9_A Plakophilin-2; cell adh 91.3 0.86 2.9E-05 46.4 10.1 104 105-208 7-125 (233)
102 3u0r_A Apoptosis inhibitor 5; 91.2 22 0.00074 39.7 27.6 120 80-203 38-159 (507)
103 3m1i_C Exportin-1; heat repeat 91.0 15 0.00053 45.7 23.5 220 249-489 12-265 (1049)
104 1lrv_A LRV, leucine-rich repea 90.6 0.27 9.3E-06 50.5 5.7 180 77-334 57-240 (244)
105 2of3_A ZYG-9; multifunctional 89.9 4.5 0.00015 41.8 14.2 130 320-489 96-238 (266)
106 2of3_A ZYG-9; multifunctional 89.3 0.49 1.7E-05 49.1 6.3 177 42-220 59-249 (266)
107 3l9t_A Putative uncharacterize 89.0 0.96 3.3E-05 45.7 8.0 144 68-221 69-221 (240)
108 3a6p_A Exportin-5; exportin-5, 88.6 61 0.0021 41.0 35.2 122 82-206 25-161 (1204)
109 3grl_A General vesicular trans 86.9 51 0.0018 38.2 22.3 180 24-210 37-244 (651)
110 3oc3_A Helicase MOT1, MOT1; re 86.7 8.2 0.00028 43.8 14.2 162 107-315 264-431 (800)
111 3tt9_A Plakophilin-2; cell adh 84.8 26 0.00087 35.3 16.1 58 319-376 16-82 (233)
112 3gjx_A Exportin-1; transport, 84.7 47 0.0016 41.3 21.5 217 263-500 37-289 (1073)
113 1ho8_A Vacuolar ATP synthase s 82.6 66 0.0023 35.8 19.6 67 420-486 394-475 (480)
114 2xzz_A Protein-glutamine gamma 80.9 4.4 0.00015 35.3 7.4 52 648-703 20-71 (102)
115 3oc3_A Helicase MOT1, MOT1; re 80.7 40 0.0014 38.4 16.4 47 469-520 386-432 (800)
116 3l9t_A Putative uncharacterize 76.7 24 0.00084 35.5 12.2 30 252-281 69-98 (240)
117 3jxy_A Alkylpurine DNA glycosy 72.9 6.6 0.00023 39.6 7.3 153 75-239 66-223 (232)
118 2b6c_A Hypothetical protein EF 72.8 7.2 0.00025 39.0 7.4 147 75-234 60-211 (220)
119 4gmo_A Putative uncharacterize 72.4 16 0.00053 43.3 11.5 141 75-215 39-222 (684)
120 4gmo_A Putative uncharacterize 72.1 7.3 0.00025 46.2 8.5 67 110-176 38-112 (684)
121 2iw3_A Elongation factor 3A; a 71.7 21 0.00073 43.7 12.5 138 347-487 55-204 (986)
122 1lsh_A Lipovitellin (LV-1N, LV 70.0 1.6E+02 0.0056 36.5 20.3 137 338-487 432-576 (1056)
123 3o2t_A Symplekin; heat repeat, 69.9 1.3E+02 0.0044 32.6 21.4 189 230-429 41-272 (386)
124 1t06_A Hypothetical protein; s 68.4 9.3 0.00032 38.7 7.1 78 136-217 107-190 (235)
125 3g2s_A C-terminal fragment of 58.3 58 0.002 30.2 10.0 117 266-396 27-145 (149)
126 1vsy_4 Proteasome activator BL 57.1 2.4E+02 0.0082 33.7 17.6 71 136-206 334-411 (799)
127 1vsy_5 Proteasome activator BL 56.2 17 0.00059 44.8 7.7 111 75-186 765-891 (997)
128 2b6c_A Hypothetical protein EF 55.5 46 0.0016 33.0 9.5 70 111-180 129-198 (220)
129 3ldz_A STAM-1, signal transduc 54.7 75 0.0026 29.0 10.1 93 291-396 42-136 (140)
130 1x5b_A Signal transducing adap 54.7 81 0.0028 29.7 10.5 117 267-400 32-150 (163)
131 3jxy_A Alkylpurine DNA glycosy 54.0 98 0.0034 30.8 11.8 66 116-181 141-206 (232)
132 3zyq_A Hepatocyte growth facto 53.6 96 0.0033 30.8 11.5 115 267-396 25-140 (226)
133 1mhq_A ADP-ribosylation factor 52.2 75 0.0026 29.4 9.7 92 291-396 38-135 (148)
134 3ldz_A STAM-1, signal transduc 52.1 1.3E+02 0.0044 27.4 11.3 71 91-165 26-109 (140)
135 3dad_A FH1/FH2 domain-containi 52.0 2.4E+02 0.0081 29.8 15.0 61 148-208 125-190 (339)
136 3a6p_A Exportin-5; exportin-5, 49.9 66 0.0022 40.7 11.8 130 361-490 438-616 (1204)
137 1juq_A ADP-ribosylation factor 48.8 76 0.0026 30.1 9.4 117 266-396 29-147 (171)
138 3tj1_A RNA polymerase I-specif 47.2 2.6E+02 0.0089 32.4 15.0 43 470-512 225-267 (649)
139 1dvp_A HRS, hepatocyte growth 43.2 1.5E+02 0.005 29.3 10.9 94 291-396 42-137 (220)
140 2jak_A Serine/threonine-protei 41.7 2.4E+02 0.0081 30.5 12.9 140 289-430 146-305 (392)
141 1vdy_A Hypothetical protein (R 40.2 50 0.0017 30.3 6.2 44 137-180 45-88 (140)
142 2npp_B PP2A, B subunit, serine 40.0 3.8E+02 0.013 29.5 14.4 142 289-430 134-293 (449)
143 3dad_A FH1/FH2 domain-containi 36.9 2.8E+02 0.0096 29.3 12.2 94 113-206 167-285 (339)
144 3zyq_A Hepatocyte growth facto 36.6 2.2E+02 0.0076 28.1 11.1 71 91-164 29-112 (226)
145 3fga_B Serine/threonine-protei 36.5 4.4E+02 0.015 28.5 14.4 140 289-430 101-260 (403)
146 2f31_A Diaphanous protein homo 36.1 3.3E+02 0.011 26.9 14.7 71 269-354 69-143 (233)
147 1dvp_A HRS, hepatocyte growth 35.5 1.1E+02 0.0038 30.2 8.6 68 92-162 27-107 (220)
148 2bnx_A Diaphanous protein homo 35.4 2.7E+02 0.0091 30.0 12.3 71 269-354 73-147 (386)
149 3gs3_A Symplekin, LD45768P; he 33.7 3.9E+02 0.013 27.0 20.7 44 382-425 211-255 (257)
150 3zy7_A AP-1 complex subunit ga 29.7 2.9E+02 0.0099 24.4 9.5 55 649-706 30-87 (122)
151 2q3z_A Transglutaminase 2; tra 27.1 67 0.0023 37.5 5.9 53 648-703 601-654 (687)
152 3g2s_A C-terminal fragment of 26.6 3.8E+02 0.013 24.6 12.0 87 76-166 17-122 (149)
153 1t06_A Hypothetical protein; s 25.9 4.2E+02 0.015 26.1 11.1 42 382-424 150-191 (235)
154 2r39_A FIXG-related protein; s 25.4 2.1E+02 0.0072 24.9 7.8 68 651-725 34-101 (118)
155 1upk_A MO25 protein; transfera 25.1 6.2E+02 0.021 26.6 14.7 24 255-278 255-278 (341)
156 1elk_A Target of MYB1; superhe 24.9 2.3E+02 0.0079 26.2 8.3 132 253-396 19-152 (157)
157 1gyu_A Adapter-related protein 24.3 3E+02 0.01 25.0 8.7 45 649-696 48-93 (140)
158 1juq_A ADP-ribosylation factor 23.5 1.8E+02 0.006 27.5 7.2 74 142-215 14-87 (171)
159 1vjj_A Protein-glutamine gluta 23.2 68 0.0023 37.4 4.9 53 648-703 608-660 (692)
160 1mhq_A ADP-ribosylation factor 23.1 1.9E+02 0.0065 26.6 7.2 55 160-214 20-74 (148)
161 1z5h_A Tricorn protease intera 22.5 7.3E+02 0.025 29.3 14.1 135 341-485 490-632 (780)
162 3eg5_B Protein diaphanous homo 21.6 7.5E+02 0.026 26.3 15.4 72 268-354 134-209 (383)
163 1x5b_A Signal transducing adap 21.4 1.4E+02 0.0048 28.0 6.0 55 160-214 34-88 (163)
164 1upk_A MO25 protein; transfera 20.5 7.6E+02 0.026 26.0 13.6 122 350-502 168-297 (341)
165 4flb_A Regulation of nuclear P 20.2 3.9E+02 0.013 23.6 8.6 50 364-414 21-70 (132)
166 1iu1_A Gamma1-adaptin; coated 20.1 4E+02 0.014 24.3 8.7 45 649-696 54-99 (146)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=3.8e-78 Score=720.39 Aligned_cols=513 Identities=18% Similarity=0.259 Sum_probs=449.6
Q ss_pred hHHHHHh-hhc-CCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cchh
Q 002900 28 AVLQEAR-VFN-DPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEV 104 (869)
Q Consensus 28 ~~~qe~r-~f~-~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~ 104 (869)
.+++|+| .|+ +++.+.++|+++|+|+||++++|+ |++++||.++|+++|+|+++||+||||+..+++. +|++
T Consensus 35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~-----d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~ 109 (621)
T 2vgl_A 35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH-----DIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI 109 (621)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSC-----CCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----CCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH
Confidence 3567888 898 567899999999999999999999 9999999999999999999999999999999987 7889
Q ss_pred HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHh--cCCChHHHHHHHHHHhhhcccChHHHH--HHH
Q 002900 105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI--VDKNPVVASAALVSGIHLLQTTPEIVK--RWS 180 (869)
Q Consensus 105 ~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l--~d~~p~VRk~A~lal~~L~~~~pe~v~--~~~ 180 (869)
+|+||+|+|||+|+||++||+|||+||+|+++++++.+.++|++++ .|++|||||+|++|++|+|+.+|+.++ .|+
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999 899
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH----HHH---h-----------hccCCCCChhHHHHHHHHHHHhh
Q 002900 181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK----LVT---S-----------LTRGTVRSPLAQCLLIRYTTQVI 242 (869)
Q Consensus 181 ~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~----li~---~-----------l~~~~~~~~~~~v~llr~l~~~~ 242 (869)
+.+.++|+|+|++|+.+|+.++++++++++..+.. ++. + +.++..++||+|++++|++..+.
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 99999999999999999999999999887654321 111 1 11222568999999999998753
Q ss_pred hhhcCCCCCchhhHHHHHHHHh------------cCC--hHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhH
Q 002900 243 REAATTQTGDRPFYDFLESCLR------------HKA--EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLR 308 (869)
Q Consensus 243 ~~~~~dp~~~~~l~~~l~~~L~------------~~~--~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~r 308 (869)
+. .+|+..+.+++++..+++ +.| ++|+|||+++++++.. .+..+..++..|+.||.++++|+|
T Consensus 270 ~~--~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~nir 346 (621)
T 2vgl_A 270 PP--EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLR 346 (621)
T ss_dssp SC--SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHH
T ss_pred CC--CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchH
Confidence 22 145556677777777663 334 4999999999999964 567788899999999999999999
Q ss_pred HHHHHHhcc-------------------ccCC-CCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHH
Q 002900 309 FAAVRTLNK-------------------SLIS-DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVE 368 (869)
Q Consensus 309 y~aL~~l~~-------------------~~L~-d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~ 368 (869)
|+||+++.+ .+|+ |+|++||++||++|++|+|++|++.|++||.+|+.+.|.+||.+++.
T Consensus 347 y~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~ 426 (621)
T 2vgl_A 347 YLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVL 426 (621)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999988765 4567 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhH-HHHHHhhhc
Q 002900 369 AIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYL-STQILHFLG 447 (869)
Q Consensus 369 aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~-~~~~l~ilG 447 (869)
+|+.||+|||++..||+++|+++++.+|++ +.+++|+++++++.++|+.|++++.+|+++++++..... ...++|++|
T Consensus 427 ~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~-v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilG 505 (621)
T 2vgl_A 427 KVAILAEKYAVDYTWYVDTILNLIRIAGDY-VSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILG 505 (621)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHHHHGGG-SCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhc
Confidence 999999999999999999999999999988 678899999999999999999999999999999876643 456789999
Q ss_pred CCCCCCCC-----hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhc--CCCHHHHHHHHHHHH
Q 002900 448 TEGPKTSD-----PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLY--DGDDEVRDRATLYLN 520 (869)
Q Consensus 448 E~~~~~~~-----~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~--d~d~evrdRA~~yl~ 520 (869)
|||+...+ |.++++.+++++..+++.||+++|+|++|++.++|++++.+..+|+.+.+ |.|+||||||++|++
T Consensus 506 Ey~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 506 EFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred chHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99986544 67999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HhCCCCCCCcchhhhhhhhcCCCCCC--hHHHHHHH
Q 002900 521 TVGSDGEVIETDKDVKDFLFGSLDIP--LANIETSL 554 (869)
Q Consensus 521 ll~~~~~~~~~~~~~~~~l~~~~~~~--~~~l~~~l 554 (869)
|++.++ ++....++.++|+++ .+.|..+|
T Consensus 586 Ll~~~~-----~~~~~~vl~~~P~~~~~~~~ll~~l 616 (621)
T 2vgl_A 586 LSTVAS-----TDILATVLEEMPPFPERESSILAKL 616 (621)
T ss_dssp HHHSSC-----STTTTTTSSSCCCCCCC--------
T ss_pred HHccCH-----HHHHHHHhhcCCCCCCcchHHHHHH
Confidence 998653 245556667788776 34444443
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.2e-69 Score=648.92 Aligned_cols=499 Identities=17% Similarity=0.242 Sum_probs=436.9
Q ss_pred HHHHh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cchhHhh
Q 002900 30 LQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIV 107 (869)
Q Consensus 30 ~qe~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lv 107 (869)
++|+| .|++++ ..+|| ++|+|+||++++|+ |++++|+.++|+++|+|+++|||||||++.+++. +|.++|+
T Consensus 36 ~~~ir~~l~~~~-~~~k~-~~l~kli~~~~~G~-----d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~ 108 (618)
T 1w63_A 36 CAAIRSSFREED-NTYRC-RNVAKLLYMHMLGY-----PAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLM 108 (618)
T ss_dssp HHHHHHHHTTTC-TTTHH-HHHHHHHHHHHTTC-----CCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHhhCCC-HHHHH-HHHHHHHHHHHcCC-----CCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 44567 888776 33444 45999999999999 8999999999999999999999999999999987 6778999
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHh
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAV 187 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l 187 (869)
||+|+|||+|+||.+||+|||+||+|+++++++.+.+.|.+++.|++|||||+|++|++++++.+|+.++.|++.+.+++
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL 188 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLL 188 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTST
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHhhcChh---HHHHH-------HHhh---------ccCCCCChhHHHHHHHHHHHhhhhhcCC
Q 002900 188 QSRAALVQFHALALLHQIRQNDRL---AVSKL-------VTSL---------TRGTVRSPLAQCLLIRYTTQVIREAATT 248 (869)
Q Consensus 188 ~d~~~~v~~~al~ll~~i~~~d~~---~~~~l-------i~~l---------~~~~~~~~~~~v~llr~l~~~~~~~~~d 248 (869)
+|+|++|+++|+.+|.+++..++. .+.++ +.++ .++..++||.|+.+++.+..+... +
T Consensus 189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~ 265 (618)
T 1w63_A 189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN---D 265 (618)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---C
T ss_pred CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC---C
Confidence 999999999999999999977653 22222 2222 122367999999999999876433 5
Q ss_pred CCCchhhHHHHHHHHh------cCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-----
Q 002900 249 QTGDRPFYDFLESCLR------HKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----- 317 (869)
Q Consensus 249 p~~~~~l~~~l~~~L~------~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~----- 317 (869)
|...+.+++++..+++ +.+++|+|||+++++.+.. .+.....++..|..||.++++|+||+||+++.+
T Consensus 266 ~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 266 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC
Confidence 6666778888888764 3567999999999999964 355666789999999999999999999999876
Q ss_pred ------------ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHH
Q 002900 318 ------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLM 385 (869)
Q Consensus 318 ------------~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v 385 (869)
.|++|+|.+||++||++|+++++++|++.|+++|.+|+.+.+.+||.+++.+|+.||.+|++...|++
T Consensus 345 p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v 424 (618)
T 1w63_A 345 HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHI 424 (618)
T ss_dssp HHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhc-cCchhHHHHHHhhhcCCCCCC-----------
Q 002900 386 NFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIED-CEFTYLSTQILHFLGTEGPKT----------- 453 (869)
Q Consensus 386 ~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~-~~~~~~~~~~l~ilGE~~~~~----------- 453 (869)
+.++++|+..|.+ ++.++|.+++++++++|+.++.++.+|++++++ +........++|++||||...
T Consensus 425 ~~ll~lL~~~~~~-v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~ 503 (618)
T 1w63_A 425 DTIMRVLTTAGSY-VRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI 503 (618)
T ss_dssp HHHHHHHHHTGGG-SCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHHHhccch-hHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc
Confidence 9999999988765 668889999999999999999999999999985 555555567899999998532
Q ss_pred -CChHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCCCCc
Q 002900 454 -SDPSKYIRYIYNRVH--LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIE 530 (869)
Q Consensus 454 -~~~~~~l~~i~~~~~--~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~~~~~~ 530 (869)
.+|..+++.+.+-+. .+++.||+++++|++|++.++|+..+.+..+|+.+..|.|+||||||++|++++...
T Consensus 504 ~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~----- 578 (618)
T 1w63_A 504 QVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKY----- 578 (618)
T ss_dssp CCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-----
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCc-----
Confidence 357777777766221 689999999999999999999999999999999999999999999999999999764
Q ss_pred chhhhhhhhcCCCCCC
Q 002900 531 TDKDVKDFLFGSLDIP 546 (869)
Q Consensus 531 ~~~~~~~~l~~~~~~~ 546 (869)
+++...++.+||+++
T Consensus 579 -~~~~~~vl~~~P~~~ 593 (618)
T 1w63_A 579 -DHMRSALLERMPVME 593 (618)
T ss_dssp -TTHHHHHHSCCCCCC
T ss_pred -HHHHHHHhhcCCCCC
Confidence 245666677777665
No 3
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=8.8e-71 Score=602.73 Aligned_cols=337 Identities=58% Similarity=0.906 Sum_probs=258.3
Q ss_pred CCCCCCcCcCccCCCcccCCCccchhhhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhc
Q 002900 1 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQ 80 (869)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~qe~r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~ 80 (869)
|++++.|||||++ ++.+||.+.||++++||+|.|++++++++||+.+|+|+||++++|++||++|++++||+|+|+|+
T Consensus 1 ~~~~~~~~~~~~~--~~~~p~~~~~k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~ 78 (355)
T 3tjz_B 1 MLKKFDKKDEESG--GGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQ 78 (355)
T ss_dssp ---------------------CCCCHHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGG
T ss_pred CCccccccccccc--cccCccccchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhc
Confidence 6778888776654 33689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHH
Q 002900 81 SRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASA 160 (869)
Q Consensus 81 s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~ 160 (869)
|+|+++|||||||+++|++.+++++|+||+|+||++|+||++||+|||+||+|++++|++++.+++++++.|++|||||+
T Consensus 79 s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~ 158 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSS 158 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHH
Q 002900 161 ALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQ 240 (869)
Q Consensus 161 A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~ 240 (869)
|++|++||++.+||++++|+++++++++|+||+|++||+++|++++++|+.++.++++.+..+...+||+||.++|++..
T Consensus 159 A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~ 238 (355)
T 3tjz_B 159 ALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASR 238 (355)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886557799999999999987
Q ss_pred hhhhhcCC-CCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc--
Q 002900 241 VIREAATT-QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-- 317 (869)
Q Consensus 241 ~~~~~~~d-p~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-- 317 (869)
+.+. | |+..+.+++++.++|+|+++||+|||+++|+.+.+.+..++..++..|+.||+++++|+||+||+.+++
T Consensus 239 ~~~~---d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 239 QLED---EDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp C--------------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred hccc---cchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 6554 5 777899999999999999999999999999999776667778889999999999999999999999887
Q ss_pred ---------------ccCCCCCHHHHHHHHHHhhccCChh
Q 002900 318 ---------------SLISDQNRSIATLAITTLLKTGNES 342 (869)
Q Consensus 318 ---------------~~L~d~d~sI~~~aL~lL~~l~~e~ 342 (869)
+|++|+|+||+++|+++|+++|+|.
T Consensus 316 ~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 316 MKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp ----------------------------------------
T ss_pred HHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCCC
Confidence 7899999999999999999999984
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=5.7e-68 Score=632.08 Aligned_cols=492 Identities=16% Similarity=0.293 Sum_probs=437.1
Q ss_pred CCCccchhhhHHHHHh-hhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHh
Q 002900 19 SPFLGIEKGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKEL 97 (869)
Q Consensus 19 ~~~~~~~k~~~~qe~r-~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~ 97 (869)
..||...|+++++|+| .|.++ +.++++++++|++|++++|+ |++++|+.++++++|+|+.+||+||+|+..+
T Consensus 4 ~~~f~~~~~~e~~~i~~~L~~~--~~~~k~~~~~kli~~~~~G~-----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~ 76 (591)
T 2vgl_B 4 SKYFTTNKKGEIFELKAELNNE--KKEKRKEAVKKVIAAMTVGK-----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNY 76 (591)
T ss_dssp CCTTCCCSSSHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHTTC-----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhcccccCChHHHHHHHHcCC--CHHHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4688878889999999 55544 45566788999999999999 9999999999999999999999999999999
Q ss_pred CCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH
Q 002900 98 SPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV 176 (869)
Q Consensus 98 ~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v 176 (869)
++. +|.+++++|+|+|||+|+||.+||+|||+||+|+.+++.+.+.+.|++++.|++|||||+|+.|++++++.+|+.+
T Consensus 77 ~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 77 AKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 885 7888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred H--HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh---------hHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhh
Q 002900 177 K--RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR---------LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA 245 (869)
Q Consensus 177 ~--~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~---------~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~ 245 (869)
+ .|++.+.++|+|+|++|+.+|+.+|++++.+++ ..+.+|+..+. ..+||+++.++|.+..+.+.
T Consensus 157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~---~~~~~~q~~il~~l~~l~~~- 232 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN---ECTEWGQIFILDCLSNYNPK- 232 (591)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH---HCCHHHHHHHHHHHHTSCCC-
T ss_pred ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC---CCCchHHHHHHHHHHHhCCC-
Confidence 7 699999999999999999999999999998765 23677777765 46799999999999865321
Q ss_pred cCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCC---ChHhHh----hHHHHHHHHHcCCCchhHHHHHHHhcc-
Q 002900 246 ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGV---TNRELT----PAITVLQLFLSSSKPVLRFAAVRTLNK- 317 (869)
Q Consensus 246 ~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~---~~~~~~----~a~~~L~~~L~s~~~n~ry~aL~~l~~- 317 (869)
++.....+++.+..+|++.+++|++||+++++++... +++... .+...|. +|.++++|+||+||+++..
T Consensus 233 --~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i 309 (591)
T 2vgl_B 233 --DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLI 309 (591)
T ss_dssp --SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHH
Confidence 3334567888888899999999999999999998531 122222 2333444 4556899999999999876
Q ss_pred ---------------ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHH
Q 002900 318 ---------------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR 382 (869)
Q Consensus 318 ---------------~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~ 382 (869)
.++.+++.+||++|+++|+++++++|++.|+++|.+|+.+.+.+||.+++.+|+.+|.+||+...
T Consensus 310 ~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~ 389 (591)
T 2vgl_B 310 VQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE 389 (591)
T ss_dssp HHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH
Confidence 13334459999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHH
Q 002900 383 SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRY 462 (869)
Q Consensus 383 ~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~ 462 (869)
|++++|++++++.|++. ..++|.+++++++++|+.++.++..|++.++++..++++..++|++||||+...++.++++.
T Consensus 390 ~~v~~Ll~ll~~~~~~v-~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~ 468 (591)
T 2vgl_B 390 RCVSTLLDLIQTKVNYV-VQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLES 468 (591)
T ss_dssp HHHHHHHHHHHTCCHHH-HHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHcccchHH-HHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHH
Confidence 99999999999988874 56678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhccccCch-HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhCCC
Q 002900 463 IYNRVHLENATVRAAAVSTLAKFGAMVDALK-PRVFVLLRRCLYD-GDDEVRDRATLYLNTVGSD 525 (869)
Q Consensus 463 i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~-~~i~~ll~~~~~d-~d~evrdRA~~yl~ll~~~ 525 (869)
+++++..+++.||+++++|++|++.++|+.. +.+..+|+.+..| .|+||||||++|+++++.+
T Consensus 469 l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~ 533 (591)
T 2vgl_B 469 FLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTD 533 (591)
T ss_dssp HSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTC
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999998655 8899999999876 6789999999999999775
No 5
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=100.00 E-value=4.9e-62 Score=520.32 Aligned_cols=315 Identities=40% Similarity=0.730 Sum_probs=251.8
Q ss_pred hHHHHHHHhhcC--CCCCCccccCCccccccchhhhhcCCCCCCCCCCCCCCCCCCchhHHHhhhcCCCccccCCCCCcC
Q 002900 547 LANIETSLKNYE--PAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKS 624 (869)
Q Consensus 547 ~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~~~~~ 624 (869)
++.||+.|.+|. ++++|||++.+|..+. +..++................+...++.|+++|+.||+|++||++++|
T Consensus 3 l~~Le~~L~~Y~~~~~~~~Fd~~~Vp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ya~~L~~ipef~~lG~l~kS 80 (322)
T 1pzd_A 3 IPGLERALQQYTLEPSEKPFDLKSVPLATA--PLAEQRTESTPVTAAKQPEKVAATRQEIFQEQLAAVPEFQGLGPLFKS 80 (322)
T ss_dssp ---------------------------------------------------CCCCSHHHHHHHHHHTCGGGTTCCCCCEE
T ss_pred HHHHHHHHHHHhccCCCCCcccccCcchhh--hhhhhcccccccccccccccccchhHHHHHHHHhcchhHHHcCccccc
Confidence 578999999994 6789999999985221 111111000000000011112334567899999999999999999999
Q ss_pred C-CceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCceEEEEE
Q 002900 625 S-APVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAF 703 (869)
Q Consensus 625 s-~~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~~~~v~~ 703 (869)
| .++.|||+|+||+|+|+||+|.+||||||.|+||++||.|+||+|++++.+. |.+.+.+|+++|+||+++++||.|
T Consensus 81 S~~~v~LTE~EtEYvV~~vKHiF~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~--~~~~~~ip~~~L~~~~~g~~yv~~ 158 (322)
T 1pzd_A 81 SPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEA--YEVLCYVPARSLPYNQPGTCYTLV 158 (322)
T ss_dssp CSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSS--CEEEEEECEEEECBTCCEEEEEEE
T ss_pred CCCcccccCCCceeEEEEEEEeccCcEEEEEEEEEccCceEEeeEEEEEecCCC--ceEEEEEEHhHCCCCCCeeEEEEE
Confidence 9 8999999999999999999999999999999999999999999999998654 999999999999999999999999
Q ss_pred ecCC--CCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCccccccccchHHHhhhcCCCceeEEEEe
Q 002900 704 EKPE--GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYG 781 (869)
Q Consensus 704 ~~~~--~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~W~~l~~~~e~~~~~~ 781 (869)
+++. ...+.++|+|+|+|+++|+||+||+++++||+|||+|||++|+++|||+|+..++|.+.|++++.+.|.+++|.
T Consensus 159 ~~~~~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~~E~~~tf~ 238 (322)
T 1pzd_A 159 ALPKEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFT 238 (322)
T ss_dssp ECCSSCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCSTTCEEEEEE
T ss_pred EecCCCCCccceEEEEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeeecccCchHHHHHhcCCccceEEEEE
Confidence 9985 45678999999999999999999999999999999999999999999999998999999999986789999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEEeeccCCCeeEEEEEEecCCcchHHH
Q 002900 782 LGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDM 861 (869)
Q Consensus 782 l~~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~~~~~~~~~~~~~~~vRs~~~~v~~~ 861 (869)
|++++++++|+++++++|||++|+|+|.++++++.|+|+|+|+|++|.+|||++|+..++ ||+++++|||+++++++.
T Consensus 239 L~~~~sL~~AV~~l~~~Lgm~p~e~sd~v~~~~~sHtL~LsG~~~gg~~VLvr~rl~~~~--gv~~kl~vRS~~~~v~~~ 316 (322)
T 1pzd_A 239 LSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLD--TVTMQVTARSSEELPVDI 316 (322)
T ss_dssp ESSCCCHHHHHHHHHHHHTCEECTTTTCCCSSCSEEEEEEEEEETTSCEEEEEEEEEESS--SEEEEEEEEESSHHHHHH
T ss_pred ccCcCcHHHHHHHHHHhcCCccccCCCcCCCCCcceEEEEEEEEeCCcEEEEEEEEeeCC--ceEEEEEEecCCHHHHHH
Confidence 988999999999999999999999999888888999999999999999999999999853 899999999999999999
Q ss_pred HHHHHh
Q 002900 862 IHEIVA 867 (869)
Q Consensus 862 l~~~l~ 867 (869)
|+++++
T Consensus 317 v~~~v~ 322 (322)
T 1pzd_A 317 VLASVG 322 (322)
T ss_dssp HHHHCC
T ss_pred HHHhhC
Confidence 998864
No 6
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=100.00 E-value=6.1e-60 Score=490.00 Aligned_cols=264 Identities=43% Similarity=0.755 Sum_probs=249.9
Q ss_pred CchhHHHhhhcCCCccccCCCCCcCC-CceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcc
Q 002900 600 STVDAYEKLLSSIPEFSDFGKLFKSS-APVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAE 678 (869)
Q Consensus 600 ~~~~~~~~~l~~i~~~~~~g~~~~~s-~~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~ 678 (869)
..++.|+++|+.||+|++||++++|| .++.|||+|+||+|+|+||+|.+||||||.|+||++||.|+||+|++++.+.
T Consensus 9 ~~~~~ya~~L~~ipef~~lG~l~kSS~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~i~NTL~dq~LenVsV~~~~~d~- 87 (275)
T 1r4x_A 9 TRQEIFQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEA- 87 (275)
T ss_dssp CHHHHHHHHHHTSGGGTTSCSCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSS-
T ss_pred chhHHHHHHHhcChhHHHcCcccccCCCcccccCCCCceEEEEEEEecCCcEEEEEEeEEccCcEEEeeEEEEEEcCCC-
Confidence 35788999999999999999999999 8999999999999999999999999999999999999999999999998664
Q ss_pred cceEEeeccCCCCCCCCCceEEEEEecCC--CCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCccc
Q 002900 679 EFAEVASKPLRSLPYDSPGQIFGAFEKPE--GVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVM 756 (869)
Q Consensus 679 ~~~~~~~i~~~~L~~~~~~~~~v~~~~~~--~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~ 756 (869)
+++.+.+|+++|+|++++++||.|+++. ...+.++|+|+|+|+++|+||+||+++++||+|||+|||++++++|||+
T Consensus 88 -~~~~~~ipi~~L~~~~~g~~yV~l~~~~~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~ 166 (275)
T 1r4x_A 88 -YEVLXYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQ 166 (275)
T ss_dssp -CEEEEEECEEEECTTCCEEEEEEEECCSSSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEE
T ss_pred -ceEEEeeeccccCCCCCccEEEEEEcCCCccccccceeEEEEEEEEEeccCCCCCcCCCCccceEEccceeechhhEEe
Confidence 6888999999999999999999999985 4467899999999999999999999999999999999999999999999
Q ss_pred cccccchHHHhhhcCCCceeEEEEeCCCCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEE
Q 002900 757 KVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQ 836 (869)
Q Consensus 757 p~~~~~F~~~W~~l~~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~ 836 (869)
|+..++|.+.|++++.++|.+++|+|++++++++|++++++.|||+||+|+|.++++++.|+|+|+|+|++|.+|||++|
T Consensus 167 p~~~~nF~~~We~l~~~~E~~~tf~L~~~~sl~~AV~~l~~~Lgm~p~e~sd~v~~~~~~HtL~LsG~~~gg~~Vlvr~r 246 (275)
T 1r4x_A 167 KVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSR 246 (275)
T ss_dssp ECCCSCHHHHHHHHCSTTCEEEEEEETTCCCHHHHHHHHHHHHTCEECTTTTSCCSSCSEEEEEEEEEETTTEEEEEEEE
T ss_pred ecccCchHHHHHhcCCccceEEEEEccCcCcHHHHHHHHHHhcCCccccCCccCCCCCcceEEEEEEEEeCCcEEEEEEE
Confidence 99989999999999877899999999889999999999999999999999998888889999999999999999999999
Q ss_pred eeccCCCeeEEEEEEecCCcchHHHHHHHHh
Q 002900 837 FGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 867 (869)
Q Consensus 837 ~~~~~~~~~~~~~~vRs~~~~v~~~l~~~l~ 867 (869)
++.++ ||+++++|||+++++++.|+++++
T Consensus 247 l~~~~--gv~~kl~vRs~~~~v~~~v~~~v~ 275 (275)
T 1r4x_A 247 LLLLD--TVTMQVTARSLEELPVDIILASVG 275 (275)
T ss_dssp EEESS--SEEEEEEEEESSHHHHHHHHHHC-
T ss_pred EecCC--ceEEEEEEEcCCHHHHHHHHHhhC
Confidence 99843 899999999999999999998864
No 7
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=99.90 E-value=1.1e-22 Score=213.81 Aligned_cols=222 Identities=13% Similarity=0.149 Sum_probs=172.5
Q ss_pred cCCCCCcCCCceecCCCCCceEEEEEEEEeCC---cEEEEEEeecCCCccccccEEEEEecCCc--ccceEEeeccCCCC
Q 002900 617 DFGKLFKSSAPVELTEAETEYAVNVVKHIFDR---HVVFQYNCTNTIPEQLLENVTVIVDASEA--EEFAEVASKPLRSL 691 (869)
Q Consensus 617 ~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~~---~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~--~~~~~~~~i~~~~L 691 (869)
+|..++...++|.|. +++++.++|..|.+ +|.|+|++ +++ .+|+||++++.+.++ +.+.+....+.++|
T Consensus 39 ~f~rll~~~~GVLyE---D~~IQIg~kse~~~~~g~i~L~~gN--Ks~-~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI 112 (273)
T 3hs8_A 39 NFARFVCKNNGVLFE---NQLLQIGLKSEFRQNLGRMFIFYGN--KTS-TQFLNFTPTLICADDLQTNLNLQTKPVDPTV 112 (273)
T ss_dssp CGGGGSSCSCEEEEE---CSSEEEEEEEEEETTEEEEEEEEEE--CSS-SCBBSCCCEEECCTTHHHHEEEEECCCCSCB
T ss_pred HHHhheEcCCcEEEe---CCcEEEEEEEEEeCceEEEEEEEEc--CCC-CcceeEEEEEECCCCCCcceEEEecCCCCeE
Confidence 456677788999995 45899999999984 67788775 442 369999999987542 23665554334799
Q ss_pred CCCCCceEE--EEEecCCCCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCcccccccc--chHHHh
Q 002900 692 PYDSPGQIF--GAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVS--NFRNAW 767 (869)
Q Consensus 692 ~~~~~~~~~--v~~~~~~~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~--~F~~~W 767 (869)
+|+++.++. +.++.++...|...++ |.. + |....+.| .+||.++|||+|+.++ +|+++|
T Consensus 113 ~p~~q~qq~i~v~~~~pF~~~P~l~is----f~~---~---------g~~~~~~L-kLPi~~~kf~~p~~~~~~~F~~rW 175 (273)
T 3hs8_A 113 DGGAQVQQVVNIECISDFTEAPVLNIQ----FRY---G---------GTFQNVSV-KLPITLNKFFQPTEMASQDFFQRW 175 (273)
T ss_dssp CTTCEEEEEEEEEECSCCCCCCEEEEE----EEE---T---------TEEEEEEE-ECCCCGGGGEEECCCCHHHHHHHH
T ss_pred CCCCEEEEEEEEEEcccccCCCEEEEE----EEE---C---------CeEEEEEE-ecceehhheeccccCCHHHHHHHH
Confidence 999986544 4455565555655444 653 1 23356788 5999999999999974 899999
Q ss_pred hhcC-CCceeEEEEeCCCCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecC-cEEEEEEEeeccCCCee
Q 002900 768 ESIG-PDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGN-VKVLVRLQFGIDGPKEV 845 (869)
Q Consensus 768 ~~l~-~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~-~~vlv~~~~~~~~~~~~ 845 (869)
++++ ++.|++++|.+ ..+...+++.++++.|||.+|+|+|++++ ++++||+++++ .+++|.+|++.+.+ +.
T Consensus 176 kql~~~~~E~q~v~~~-~~~~~~~~v~~~l~~lg~~vl~g~Dpn~~-----n~v~AGi~~t~~g~~gcLvRle~n~~-~~ 248 (273)
T 3hs8_A 176 KQLSNPQQEVQNIFKA-KHPMDTEITKAKIIGFGSALLEEVDPNPA-----NFVGAGIIHTKTTQIGCLLRLEPNLQ-AQ 248 (273)
T ss_dssp HHCCSGGGEEEEEEEC-SSCCCHHHHHHHHHHHTCEECTTSSSSTT-----SEEEEEEEECSSCEEEEEEEEEEETT-TT
T ss_pred HhcCCCCceEEEEecC-CCCCCHHHHHHHHHhCCeEEeCCCCCCcc-----cEEEEEEEEeCCCCEEEEEEEEEccc-CC
Confidence 9998 67899999987 55556789999999999999999997766 57899999974 57888888888754 57
Q ss_pred EEEEEEecCCcchHHHHHHHHhc
Q 002900 846 AMKLAVRSEDDNVSDMIHEIVAS 868 (869)
Q Consensus 846 ~~~~~vRs~~~~v~~~l~~~l~~ 868 (869)
++|+||||+++++++.|++++.+
T Consensus 249 ~~rlTVRSt~~~vs~~i~~~i~~ 271 (273)
T 3hs8_A 249 MYRLTLRTSKDTVSQRLCELLSE 271 (273)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEEEEECChhHHHHHHHHHHh
Confidence 99999999999999999999864
No 8
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=99.86 E-value=2.1e-20 Score=194.81 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=171.4
Q ss_pred cCCCCCcCCCceecCCCCCceEEEEEEEEeCC---cEEEEEEeecCCCccccccEEEEEecCCc--ccceEEeeccCCCC
Q 002900 617 DFGKLFKSSAPVELTEAETEYAVNVVKHIFDR---HVVFQYNCTNTIPEQLLENVTVIVDASEA--EEFAEVASKPLRSL 691 (869)
Q Consensus 617 ~~g~~~~~s~~v~lt~~e~ey~v~~~k~~~~~---~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~--~~~~~~~~i~~~~L 691 (869)
+|..++..+++|.+. +++++.++|+.|.+ ++.|+|+++ ++ .+|+||++.+.+.+. ..+.+....+.++|
T Consensus 13 ~f~rl~~~~~GVLyE---d~~iQIg~kse~~~~~gri~l~~gNK--s~-~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I 86 (247)
T 1kyf_A 13 NFARFVCKNNGVLFE---NQLLQIGLKSEFRQNLGRMFIFYGNK--TS-TQFLNFTPTLICADDLQTNLNLQTKPVDPTV 86 (247)
T ss_dssp TGGGGSSCCCEEEEE---CSSEEEEEEEEEETTEEEEEEEEEEC--SS-SCBEEEEEEEECCHHHHHHEEEEECCCCSCB
T ss_pred HHHHHHhcCceEEEE---CCCEEEEEEEEEeCCeEEEEEEEEcC--CC-CceeeEEEEEecCcccCCCeeEecCCCCcee
Confidence 455667788999994 55899999999984 778888855 42 469999999876431 13666544455689
Q ss_pred CCCCCceEEEEEec--CCCCCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCcccccccc--chHHHh
Q 002900 692 PYDSPGQIFGAFEK--PEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVS--NFRNAW 767 (869)
Q Consensus 692 ~~~~~~~~~v~~~~--~~~~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~--~F~~~W 767 (869)
+|+++.++.+.++. ++...|..+++ |... |-...+.| .+|+.+++||+|..++ +|+++|
T Consensus 87 ~~~~q~qq~i~v~~~~~f~~~P~l~is----f~~~------------g~~~~~~L-kLPi~l~KF~~p~~~~~~~Ff~rW 149 (247)
T 1kyf_A 87 DGGAQVQQVVNIECISDFTEAPVLNIQ----FRYG------------GTFQNVSV-KLPITLNKFFQPTEMASQDFFQRW 149 (247)
T ss_dssp CTTCEEEEEEEEEECSCCCCCCEEEEE----EEET------------TEEEEEEE-ECCCCGGGGEEECCCCHHHHHHHH
T ss_pred CCCcEEEEEEEEEEccccCCCCEEEEE----EEEC------------CeeeEEEE-ecCcEEEEeecCCcCCHHHHHHHH
Confidence 99998776655544 44545555443 6541 22356778 5999999999999985 799999
Q ss_pred hhcC-CCceeEEEEeCCCCCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecC-cEEEEEEEeeccCCCee
Q 002900 768 ESIG-PDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGN-VKVLVRLQFGIDGPKEV 845 (869)
Q Consensus 768 ~~l~-~~~e~~~~~~l~~~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~-~~vlv~~~~~~~~~~~~ 845 (869)
++++ ++.|.+..|......+ .+.+..++..|||.+++|.||+++ +++.||+++++ .+++|.+|++.+.+ +.
T Consensus 150 ~~l~~~~~E~q~~f~~~~~~~-~~~~~~~l~gf~~~vl~~vDpn~~-----niv~agi~~t~~~~~gcLlRlE~n~~-~~ 222 (247)
T 1kyf_A 150 KQLSNPQQEVQNIFKAKHPMD-TEITKAKIIGFGSALLEEVDPNPA-----NFVGAGIIHTKTTQIGCLLRLEPNLQ-AQ 222 (247)
T ss_dssp TTCCSGGGEEEEEEECSSCCC-HHHHHHHHHHHTSEEECSSSSSTT-----SEEEEEEEECSSCEEEEEEEEEEETT-TT
T ss_pred HhccCCCceeEEEeccCCCcC-HHHHHHHHhcCCeEEeeCCCCCcC-----cEEEEEEEEcCCCcEEEEEEEEEcCc-CC
Confidence 9998 4679999998853344 466788899999999999998765 69999999994 58999999998865 56
Q ss_pred EEEEEEecCCcchHHHHHHHHhc
Q 002900 846 AMKLAVRSEDDNVSDMIHEIVAS 868 (869)
Q Consensus 846 ~~~~~vRs~~~~v~~~l~~~l~~ 868 (869)
++|+||||+++.+++.|+++|.+
T Consensus 223 ~~rltvRss~~~vs~~l~~ll~~ 245 (247)
T 1kyf_A 223 MYRLTLRTSKDTVSQRLCELLSE 245 (247)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEEEEECChHHHHHHHHHHHh
Confidence 89999999999999999999864
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.60 E-value=3.4e-13 Score=159.12 Aligned_cols=450 Identities=12% Similarity=0.107 Sum_probs=306.2
Q ss_pred hhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cch--hHhhhhHHHhhcCCCCHHHHhHHHHHhccCC---ChhhHHH
Q 002900 68 ATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADE--VIIVTSSLMKDMTSKTDMYRANAIRVLCRIT---DGTLLTQ 141 (869)
Q Consensus 68 ~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~--~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~---~~~~~~~ 141 (869)
...++..+.+++.+++...|+..--.+..++.. ++. .-.+...+.+=..++++.+|..|.+.++.+. .+.+.+.
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~ 164 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE 164 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 345666666677788889999888888777654 322 1123444444446788999988888777543 3456778
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcccChH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh-hH----HH
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPE--IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDR-LA----VS 214 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe--~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~-~~----~~ 214 (869)
+.+.+.+++.|.++.||+.|+.++.++.+..+. ....+++.+..+++|.++.|...|+..|..+...-+ .. +.
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 244 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 244 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 889999999999999999999999998765442 334677778888888889898888888777764321 11 22
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCC-CCchhhHHHHHHHHhcCChHHHHHHHHHHHhccC-CCh-----H
Q 002900 215 KLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQ-TGDRPFYDFLESCLRHKAEMVIFEAARAITELNG-VTN-----R 287 (869)
Q Consensus 215 ~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp-~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~-~~~-----~ 287 (869)
.++..+.. ..++.......+.+..+.... .+ .....+++.+...+++.++.|.-.|+.++..+.. .+. .
T Consensus 245 ~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 320 (588)
T 1b3u_A 245 PTLRQAAE--DKSWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320 (588)
T ss_dssp HHHHHHHT--CSSHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHcc--CCCHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence 22223322 123322223333333222110 11 1124567888888888888898888888765521 111 2
Q ss_pred hHhhHHHHHHHHHcCCCchhHHHHHHHhcc-------------------ccCCCCCHHHHHHHHHHhhccCCh----hhH
Q 002900 288 ELTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------------SLISDQNRSIATLAITTLLKTGNE----SSV 344 (869)
Q Consensus 288 ~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-------------------~~L~d~d~sI~~~aL~lL~~l~~e----~nv 344 (869)
.....+..+..++.++++.+|-.++..+.. .+++|++..+|..++..|-.++.. ...
T Consensus 321 ~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 400 (588)
T 1b3u_A 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 345567777888888888898887766544 456888999999998877666432 234
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc--HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCc--hHH
Q 002900 345 DRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPD--AKE 420 (869)
Q Consensus 345 ~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~--~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~--~~~ 420 (869)
..++..|..++.+.+...|..++..++.++..++.. ...++..+..++.+. ...++..++..+..++...+. ...
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~ 479 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEWAHA 479 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 567777778787878889999999999999876553 246778888888754 456888888888888876543 234
Q ss_pred HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC---hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc--CchHH
Q 002900 421 NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD---PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD--ALKPR 495 (869)
Q Consensus 421 ~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~---~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~--~l~~~ 495 (869)
.++..|.+.+.+ ....++..++|.+|+.+..... ...++..+.+.+..+.+.||..++.++.+++.... ...+.
T Consensus 480 ~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 558 (588)
T 1b3u_A 480 TIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE 558 (588)
T ss_dssp HTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHH
Confidence 555666655544 3456777788888877543211 12344555666667789999999999999986543 22356
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 002900 496 VFVLLRRCLYDGDDEVRDRATLYLNTVG 523 (869)
Q Consensus 496 i~~ll~~~~~d~d~evrdRA~~yl~ll~ 523 (869)
+...+.....|.|.+||+.|+..+.-++
T Consensus 559 ~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 559 VKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 7788888889999999999998776654
No 10
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.49 E-value=1.6e-12 Score=154.88 Aligned_cols=423 Identities=8% Similarity=0.018 Sum_probs=276.5
Q ss_pred HHHHHHHHhcCCCCCccch-hhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHH
Q 002900 50 ITKLLYLLNQGETFTKIEA-TEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIR 128 (869)
Q Consensus 50 l~kli~l~~~G~~~~~~e~-s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr 128 (869)
+||+.|+...-.--.+-|. .-..-.+.|-++++|...|-+.--+++.+.. ++.+--+...+.+-+.|+||++|-.|+.
T Consensus 86 ~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~~l~~~l~~~L~~~~~~VRk~A~~ 164 (618)
T 1w63_A 86 DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCRDLAGEVEKLLKTSNSYLRKKAAL 164 (618)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677776543210011132 2223345566789999999888888877763 4555566788888899999999999999
Q ss_pred HhccCC--ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHH---HHHHHHHHHHHhc---------------
Q 002900 129 VLCRIT--DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---VKRWSNEVQEAVQ--------------- 188 (869)
Q Consensus 129 ~L~~I~--~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~---v~~~~~~l~~~l~--------------- 188 (869)
+++++. .|+.++.+.+.+.+++.|++|.|+-.|+.++..+...+|+. ...+++.+...|.
T Consensus 165 al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~ 244 (618)
T 1w63_A 165 CAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSG 244 (618)
T ss_dssp HHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSS
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccC
Confidence 999875 68888888999999999999999999999999999888874 2233343433332
Q ss_pred CCChhHHHHHHHHHHHHhhcChhH---HHHHHHhhc----cCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHH
Q 002900 189 SRAALVQFHALALLHQIRQNDRLA---VSKLVTSLT----RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLES 261 (869)
Q Consensus 189 d~~~~v~~~al~ll~~i~~~d~~~---~~~li~~l~----~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~ 261 (869)
..+|-.+...+.+|..+...++.. +..++..+. .....++......++.+..+ . .+|.......+.+..
T Consensus 245 ~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l--~--~~~~l~~~a~~~L~~ 320 (618)
T 1w63_A 245 ISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI--K--SESGLRVLAINILGR 320 (618)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS--C--CCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc--C--CCHHHHHHHHHHHHH
Confidence 247888888888888888776542 223333331 11012334445566665542 1 122223345677888
Q ss_pred HHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------ccCCCCCHH
Q 002900 262 CLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------SLISDQNRS 326 (869)
Q Consensus 262 ~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------~~L~d~d~s 326 (869)
+|.+.++.|.|-|+.++..+....+..+......+-..+.+++..+|-.++..+.. .++.+.|..
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e 400 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPE 400 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHH
Confidence 89888889999998888777422233344444445555677888899888887755 445677889
Q ss_pred HHHHHHHHhhccCC--hhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC--CcchHH
Q 002900 327 IATLAITTLLKTGN--ESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG--GFEYKK 402 (869)
Q Consensus 327 I~~~aL~lL~~l~~--e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g--~~~~~~ 402 (869)
+|+.++..+..+|. +.+....+..|.+.+...++.++.+++..+..+..++|+....++..+.+++.... .-..+.
T Consensus 401 ~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~ 480 (618)
T 1w63_A 401 FKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQV 480 (618)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 99999999988875 35677777777777777676788889999999999999998889999999988531 111222
Q ss_pred HHHHHHHHHHHhCCc-----------hHHHHHHHHHHhhhc-cCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccC-
Q 002900 403 AIVDSIVILIRDIPD-----------AKENGLLHLCEFIED-CEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHL- 469 (869)
Q Consensus 403 ~iv~~i~~ii~~~p~-----------~~~~~l~~L~~~l~~-~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~- 469 (869)
.+| .+-......++ ....++..|..+++. -..+.++..++|.++.++...+...+.+..++.++..
T Consensus 481 ~~w-ilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~ 559 (618)
T 1w63_A 481 AAW-CIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSS 559 (618)
T ss_dssp HHH-HHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTC
T ss_pred HHH-HHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCC
Confidence 222 44443321111 112345555555543 2456778888888888766543333444444443321
Q ss_pred CCHHHHHHH
Q 002900 470 ENATVRAAA 478 (869)
Q Consensus 470 e~~~vr~~~ 478 (869)
.+++||.-+
T Consensus 560 ~d~evrdRA 568 (618)
T 1w63_A 560 IDVELQQRA 568 (618)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 234554433
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.43 E-value=1.1e-11 Score=147.22 Aligned_cols=402 Identities=12% Similarity=0.104 Sum_probs=232.4
Q ss_pred HHHHhhcCCCccchhHHHH---HHHHhCCCcchhHhhhhHHHhhcCCCCHHHHh---HHHHHhccCCChhhHHHHHHHHH
Q 002900 74 AVTKLFQSRDIGLRRMVYL---MIKELSPSADEVIIVTSSLMKDMTSKTDMYRA---NAIRVLCRITDGTLLTQIERYLK 147 (869)
Q Consensus 74 ~v~kl~~s~d~~lKrl~Yl---~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~---lALr~L~~I~~~~~~~~l~~~i~ 147 (869)
.+-+.+.++|...|+-+-. |+..+...... +. -.+.+-++++|+.+|- +++..+++. .++++..+...++
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~--~~-~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~~n~l~ 92 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSS--LF-PDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMAIMAVNSFV 92 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGG--GH-HHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHHHTTHHHHG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHH--HH-HHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHHHHHHHHHH
Confidence 3455667777665543322 22112222112 21 1234457788888774 444444432 3566666677788
Q ss_pred HHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCC
Q 002900 148 QAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRS 227 (869)
Q Consensus 148 ~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~ 227 (869)
+-+.|++|+||..|+-++.++. .|++.+.+.+.+..++.|++|.|...|+..+..+...++..+..
T Consensus 93 kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~------------ 158 (591)
T 2vgl_B 93 KDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED------------ 158 (591)
T ss_dssp GGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH------------
T ss_pred HHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc------------
Confidence 8888888888888888888875 77777778888888888888888888877777666543322221
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChH-----hHhhHHHHHHHHHcC
Q 002900 228 PLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR-----ELTPAITVLQLFLSS 302 (869)
Q Consensus 228 ~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~-----~~~~a~~~L~~~L~s 302 (869)
..+++.+..+|.+.++.|+..|+.++..+....++ ....++..|...+..
T Consensus 159 -------------------------~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~ 213 (591)
T 2vgl_B 159 -------------------------QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE 213 (591)
T ss_dssp -------------------------HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH
T ss_pred -------------------------ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC
Confidence 01233455555555566666666666555321110 001122222222223
Q ss_pred CCchhHHHHHHHhcc-----------------ccCCCCCHHHHHHHHHHhhccCC-----hhhHHHHHHHHHH---hhhh
Q 002900 303 SKPVLRFAAVRTLNK-----------------SLISDQNRSIATLAITTLLKTGN-----ESSVDRLMKQITN---FMSD 357 (869)
Q Consensus 303 ~~~n~ry~aL~~l~~-----------------~~L~d~d~sI~~~aL~lL~~l~~-----e~nv~~Il~eL~~---y~~~ 357 (869)
.++-.+...++.+.+ .++++.|.+|+..|..++..+++ ++.+..+++.+.. ++.+
T Consensus 214 ~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~ 293 (591)
T 2vgl_B 214 CTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS 293 (591)
T ss_dssp CCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333221 45677777888888888777653 3445444433322 3344
Q ss_pred ccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchh
Q 002900 358 IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTY 437 (869)
Q Consensus 358 ~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~ 437 (869)
.+.+.|..++.+++.++.++|......+..+.... ..+..++....+.+..+. +++--+.++..|.+++.+. +.+
T Consensus 294 ~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~--~d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~~l~~~-d~~ 368 (591)
T 2vgl_B 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKY--NDPIYVKLEKLDIMIRLA--SQANIAQVLAELKEYATEV-DVD 368 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT--TSCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHHHTTSS-CHH
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHHHHHhheecc--CChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHHHHhcC-CHH
Confidence 67788999999999998888765433222221111 122345566666555544 3334456777888888763 456
Q ss_pred HHHHHHhhhcCCCCCCC-ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhc-CCCHHHHHHH
Q 002900 438 LSTQILHFLGTEGPKTS-DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLY-DGDDEVRDRA 515 (869)
Q Consensus 438 ~~~~~l~ilGE~~~~~~-~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~-d~d~evrdRA 515 (869)
.+..++|-+|..+.+.. +...++..+.+-+...+..++..++.++..+..++|+.+..+..-+..+.. +.++++|..+
T Consensus 369 ~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~ 448 (591)
T 2vgl_B 369 FVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAM 448 (591)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77777788887766542 235667777776667778888877888888877777765444444444443 4557776554
Q ss_pred HHHHHHhCCC
Q 002900 516 TLYLNTVGSD 525 (869)
Q Consensus 516 ~~yl~ll~~~ 525 (869)
. |-+-+.+
T Consensus 449 ~--wilGey~ 456 (591)
T 2vgl_B 449 I--WIVGEYA 456 (591)
T ss_dssp H--HHHHTTC
T ss_pred H--HHHHccc
Confidence 4 4444444
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.42 E-value=3.7e-11 Score=141.52 Aligned_cols=406 Identities=15% Similarity=0.151 Sum_probs=204.1
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccC----CChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhccc--ChHHHHHH
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRI----TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQT--TPEIVKRW 179 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I----~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~--~pe~v~~~ 179 (869)
--+..+.+.+.|+++.+|-.|++.++.+ +.....+.+.+.+...+ |.++.||+.|+.++.++.+. .++....+
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~l 88 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGG
T ss_pred CcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455666666666666666666666553 22233444555555544 55666666666666655432 22333344
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhcChh-H----HHHHHHhhccCCCCChhHHH--HHHHHHHHhhhhhcCCCCCc
Q 002900 180 SNEVQEAVQSRAALVQFHALALLHQIRQNDRL-A----VSKLVTSLTRGTVRSPLAQC--LLIRYTTQVIREAATTQTGD 252 (869)
Q Consensus 180 ~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~-~----~~~li~~l~~~~~~~~~~~v--~llr~l~~~~~~~~~dp~~~ 252 (869)
++.+..++.+.++.|...|...|..+...-+. . +..++..+..+ +|..+ ...+.+..+... ..+...
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~----~~~~~R~~a~~~l~~~~~~--~~~~~~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG----DWFTSRTSACGLFSVCYPR--VSSAVK 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC----SSHHHHHHHGGGHHHHTTT--SCHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHh--cCHHHH
Confidence 45555555555666666666666655543211 1 12222222211 12111 112222221110 011112
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHhccC-CCh-HhHhhHHHHHHHHHcCCCchhHHHHHHHhcc-------------
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAITELNG-VTN-RELTPAITVLQLFLSSSKPVLRFAAVRTLNK------------- 317 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~-~~~-~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~------------- 317 (869)
..+++.+...+++.++.|...|+.++..+.. .+. ......+..+..+++++++.+|..++..+..
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 242 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455555556666667777777776655421 111 1223345555566666666666655555432
Q ss_pred ------ccCCCCCHHHHHHHHHHhhccCC---hh-hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc------H
Q 002900 318 ------SLISDQNRSIATLAITTLLKTGN---ES-SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK------Y 381 (869)
Q Consensus 318 ------~~L~d~d~sI~~~aL~lL~~l~~---e~-nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~------~ 381 (869)
.+++|++..+|+.+...|-.++. ++ ....++..+...+.+.+.+.|..++.+++.++...++. .
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 23466666777777776655543 11 12345556666666666777777777777777766543 2
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch--HHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC---h
Q 002900 382 RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA--KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD---P 456 (869)
Q Consensus 382 ~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~--~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~---~ 456 (869)
..++..+..++.+. +..++..+...+..+....++- ...++..+...+.| .+++++..++..+|..+..... .
T Consensus 323 ~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~ 400 (588)
T 1b3u_A 323 SQILPCIKELVSDA-NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD-ECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp HTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTC-SCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33444555555432 2334444444444443322211 12344445555554 3455555555555544322211 1
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc--CchHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002900 457 SKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD--ALKPRVFVLLRRCLYDGDDEVRDRATLYLN 520 (869)
Q Consensus 457 ~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~--~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ 520 (869)
..++..+.......+..+|..++.++..++...+ ...+.+...+...+.|.+.+||..|...+.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 2233333333334466677777777766654432 123455666666667777777777765443
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.36 E-value=2.1e-09 Score=133.17 Aligned_cols=469 Identities=13% Similarity=0.114 Sum_probs=294.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cch---------hHhhhhHHHhh
Q 002900 45 RCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADE---------VIIVTSSLMKD 114 (869)
Q Consensus 45 k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~---------~~Lvinsl~kD 114 (869)
..+..+..++..+...+ + .....++...+.+++++.+...|..+...+..+++. ++. .--++..+.+-
T Consensus 105 ~vr~~~a~~i~~ia~~~-~-~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~ 182 (852)
T 4fdd_A 105 LIRATVGILITTIASKG-E-LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182 (852)
T ss_dssp HHHHHHHHHHHHHHHHT-T-TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhc-C-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHH
Confidence 45555777777766543 1 124566788888999999998888888777655542 221 33456677788
Q ss_pred cCCCCHHHHhHHHHHhccCCCh------hhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH----HHHHHHH
Q 002900 115 MTSKTDMYRANAIRVLCRITDG------TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK----RWSNEVQ 184 (869)
Q Consensus 115 l~s~n~~vr~lALr~L~~I~~~------~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~----~~~~~l~ 184 (869)
++++++.+|..|+++++.+... ...+.+.+.+.+.+.|.++.||+.|+-|+.++...+|+.+. .+++.+.
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~ 262 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYML 262 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 8899999999999999987642 22456778888888999999999999999999988887654 5666666
Q ss_pred HHhcCCChhHHHHHHHHHHHHhhcCh------hHHHHHHHhhc----c---------CC---------CCChhHH----H
Q 002900 185 EAVQSRAALVQFHALALLHQIRQNDR------LAVSKLVTSLT----R---------GT---------VRSPLAQ----C 232 (869)
Q Consensus 185 ~~l~d~~~~v~~~al~ll~~i~~~d~------~~~~~li~~l~----~---------~~---------~~~~~~~----v 232 (869)
.++.|.++.|...|+..+..++.... ..+.++++.+. + +. ....|.. .
T Consensus 263 ~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~ 342 (852)
T 4fdd_A 263 QRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSA 342 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHH
T ss_pred HHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHH
Confidence 77788889999999888887764310 01223332110 0 00 0023432 2
Q ss_pred HHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChH----hHhhHHHHHHHHHcCCCchhH
Q 002900 233 LLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNR----ELTPAITVLQLFLSSSKPVLR 308 (869)
Q Consensus 233 ~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~----~~~~a~~~L~~~L~s~~~n~r 308 (869)
..+..+...+. ......+++.+...+++.+..+...|+.++..+...... .+..++..+..++.++++.+|
T Consensus 343 ~~L~~la~~~~-----~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr 417 (852)
T 4fdd_A 343 AALDVLANVYR-----DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVR 417 (852)
T ss_dssp HHHHHHHHHHG-----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHhcc-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 33333333211 223456778888889999999999999999988654332 234567777888888999999
Q ss_pred HHHHHHhcc----------------------ccCCCCCHHHHHHHHHHhhccCCh------hhHHHHHHHHHHhhhhccH
Q 002900 309 FAAVRTLNK----------------------SLISDQNRSIATLAITTLLKTGNE------SSVDRLMKQITNFMSDIAD 360 (869)
Q Consensus 309 y~aL~~l~~----------------------~~L~d~d~sI~~~aL~lL~~l~~e------~nv~~Il~eL~~y~~~~~~ 360 (869)
..+..++.+ ..+.|++..+|..|...|..++.. .-+..|+..|...+...+.
T Consensus 418 ~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~ 497 (852)
T 4fdd_A 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 497 (852)
T ss_dssp HHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhCh
Confidence 988887754 345688889998888887776532 2345777777776665555
Q ss_pred HHHHHHHHHHHHHHhhCCc------cHHHHHHHHHHHHhh--cCCcchHHHHHHHHHHHHHhCC-chH---HHHHHHHHH
Q 002900 361 EFKIVVVEAIRSLCLKFPL------KYRSLMNFLSNILRE--EGGFEYKKAIVDSIVILIRDIP-DAK---ENGLLHLCE 428 (869)
Q Consensus 361 ~~r~~~v~aI~~la~k~~~------~~~~~v~~ll~ll~~--~g~~~~~~~iv~~i~~ii~~~p-~~~---~~~l~~L~~ 428 (869)
.-...++.+|+.++..-.+ -.+.++..+++.+.. ..+..+ ..+.+.+..++.... ... ..+...+++
T Consensus 498 ~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~ 576 (852)
T 4fdd_A 498 KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVN 576 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 5556677788877753222 223333333322221 112222 234455555544321 111 112222222
Q ss_pred hhhcc----------------CchhHHHHHHhhhcCCCCCCC-C--h----HHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 002900 429 FIEDC----------------EFTYLSTQILHFLGTEGPKTS-D--P----SKYIRYIYNRVHLENATVRAAAVSTLAKF 485 (869)
Q Consensus 429 ~l~~~----------------~~~~~~~~~l~ilGE~~~~~~-~--~----~~~l~~i~~~~~~e~~~vr~~~ltal~Kl 485 (869)
.+.++ ...+.+..+++.+|....... + | ..++..+...+...++.||..+..++..+
T Consensus 577 ~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 577 LVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp HHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 22211 123455555666555432211 1 1 13566666666666799999888888877
Q ss_pred hcccc-Cch---HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002900 486 GAMVD-ALK---PRVFVLLRRCLYDGDDEVRDRATLYLNT 521 (869)
Q Consensus 486 ~~~~~-~l~---~~i~~ll~~~~~d~d~evrdRA~~yl~l 521 (869)
+..++ ++. +.+..++...+.+.++++|.-|...+.-
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~ 696 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGE 696 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 76554 333 3466666677777788999888775444
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.25 E-value=1.5e-10 Score=123.52 Aligned_cols=247 Identities=15% Similarity=0.075 Sum_probs=159.8
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
..++.|.+.|.|+|+.+|..|+++|+++++++.++. +.+++.|.++.||..|+.++.++... ++.+..+++.+.+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~----L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRL----AIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNILNN 97 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHH----HHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHH----HHHHHcCCCHHHHHHHHHHHHHhccc-cccchHHHHHHHH
Confidence 357888999999999999999999999998765554 55667999999999999999988642 3334445555543
Q ss_pred -HhcCCChhHHHHHHHHHHHHhhcCh----hHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHH
Q 002900 186 -AVQSRAALVQFHALALLHQIRQNDR----LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLE 260 (869)
Q Consensus 186 -~l~d~~~~v~~~al~ll~~i~~~d~----~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~ 260 (869)
++.|.++.|..+|+..|..+...++ ..+..++.-+. .+++......++.+..+ . +| ..++.|.
T Consensus 98 ~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~--~---~~----~~~~~L~ 165 (280)
T 1oyz_A 98 MALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVI--N---DK----ATIPLLI 165 (280)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC------------CCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhc--C---CH----HHHHHHH
Confidence 4678899999999999888875432 12222222222 23444444444444321 0 12 2345555
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCC
Q 002900 261 SCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGN 340 (869)
Q Consensus 261 ~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~ 340 (869)
..|++.++.|...|+.++..+..... .++..|. .+++|+|..+|..|+..|-.+++
T Consensus 166 ~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~--------------------~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 166 NLLKDPNGDVRNWAAFAININKYDNS----DIRDCFV--------------------EMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHH--------------------HHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHH--------------------HHhcCCCHHHHHHHHHHHHHhCC
Confidence 55666666666666666655531111 1222222 34677788899999999999998
Q ss_pred hhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHH
Q 002900 341 ESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIV 405 (869)
Q Consensus 341 e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv 405 (869)
+..+..+++.|.. .++|..++.+++.+.. ..++..|.+++.+..+..+...++
T Consensus 222 ~~~~~~L~~~l~d------~~vr~~a~~aL~~i~~------~~~~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 222 KRVLSVLCDELKK------NTVYDDIIEAAGELGD------KTLLPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp GGGHHHHHHHHTS------SSCCHHHHHHHHHHCC------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred HhhHHHHHHHhcC------ccHHHHHHHHHHhcCc------hhhhHHHHHHHhcCCCcHHHHHHH
Confidence 8888887776643 2388888999888754 145677777777544433433333
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.25 E-value=2.8e-09 Score=121.20 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=146.7
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccC----CChh---hHH--HHHHHHHHHhcCC-ChHHHHHHHHHHhhhcccChHH
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRI----TDGT---LLT--QIERYLKQAIVDK-NPVVASAALVSGIHLLQTTPEI 175 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I----~~~~---~~~--~l~~~i~~~l~d~-~p~VRk~A~lal~~L~~~~pe~ 175 (869)
+++..|.+.++++++.+|-.|++.|.++ ..+. ++. .+.+.+.+.+.+. ++.||..|+-++..+....++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3455666666677777777777777665 2222 222 3566666677776 7788888888887777655553
Q ss_pred HH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhH---------HHHHHHhhccCCCCChhHHHHHHHHHHHh
Q 002900 176 VK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGTVRSPLAQCLLIRYTTQV 241 (869)
Q Consensus 176 v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~---------~~~li~~l~~~~~~~~~~~v~llr~l~~~ 241 (869)
.+ ..++.+.+++.+.++.+...|+..|..+...++.. +..++.-+.. ..++-.....+..+..+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Confidence 32 35666777777777778888877777776554221 1222222221 12333333444444443
Q ss_pred hhhhcCCCCC----chhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHH
Q 002900 242 IREAATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAV 312 (869)
Q Consensus 242 ~~~~~~dp~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL 312 (869)
.... +|.. ....++.+..++++.+..|...|+.++..+........ ..++..|..++.++++.+|..++
T Consensus 178 ~~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 255 (450)
T 2jdq_A 178 CRGK--SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255 (450)
T ss_dssp HCCS--SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHH
T ss_pred hCCC--CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHH
Confidence 2211 1221 24567778888888888898899998888754332211 23455555666666666666665
Q ss_pred HHhcc----------------------ccCCCCCHHHHHHHHHHhhccC--ChhhHHH-----HHHHHHHhhhhccHHHH
Q 002900 313 RTLNK----------------------SLISDQNRSIATLAITTLLKTG--NESSVDR-----LMKQITNFMSDIADEFK 363 (869)
Q Consensus 313 ~~l~~----------------------~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~-----Il~eL~~y~~~~~~~~r 363 (869)
+++.. .++++++..+|..|+.+|-.++ ++..... ++..|...+.+.+.+.|
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 55432 2344444555555555554443 2333221 22233333444444555
Q ss_pred HHHHHHHHHHHhh
Q 002900 364 IVVVEAIRSLCLK 376 (869)
Q Consensus 364 ~~~v~aI~~la~k 376 (869)
..++.+++.++..
T Consensus 336 ~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 336 KEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 5555555555543
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.24 E-value=1.2e-08 Score=126.26 Aligned_cols=383 Identities=14% Similarity=0.100 Sum_probs=244.4
Q ss_pred HHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC-------ChhhHHHHHHHH
Q 002900 74 AVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT-------DGTLLTQIERYL 146 (869)
Q Consensus 74 ~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~-------~~~~~~~l~~~i 146 (869)
.+.+...|+|...||-+.-.+.++...++-.. ..-.+..++++.++.+|-.|.-.|-+.. +++.-+.+-..+
T Consensus 17 ~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~-~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~l 95 (852)
T 4fdd_A 17 QLLKESQSPDTTIQRTVQQKLEQLNQYPDFNN-YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSEC 95 (852)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHH-HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHH-HHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34444467788888888888877654444322 2223444557778888888776555432 344556677777
Q ss_pred HHHhcCCChHHHHHHHHHHhhhcccC-hHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCC
Q 002900 147 KQAIVDKNPVVASAALVSGIHLLQTT-PEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTV 225 (869)
Q Consensus 147 ~~~l~d~~p~VRk~A~lal~~L~~~~-pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~ 225 (869)
.+++.+.++.||++|+.++..+.+.. |+.-.++++.+.+++.+.++.+...|+..|..++...+..+.. +. .
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~---~~----~ 168 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS---DV----L 168 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH---CS----S
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch---hh----h
Confidence 77788888888888888888887643 2222345566666777777778777877777776542211100 00 0
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCC-ChHh---HhhHHHHHHHHHc
Q 002900 226 RSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGV-TNRE---LTPAITVLQLFLS 301 (869)
Q Consensus 226 ~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~~~---~~~a~~~L~~~L~ 301 (869)
......+++.+..++++.+..|..+|++++..+-.. +... ....+..|..++.
T Consensus 169 -----------------------~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~ 225 (852)
T 4fdd_A 169 -----------------------DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG 225 (852)
T ss_dssp -----------------------SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT
T ss_pred -----------------------cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC
Confidence 001112233344445566667777777777644211 1111 1234455555566
Q ss_pred CCCchhHHHHHHHhcc---------------------ccCCCCCHHHHHHHHHHhhccCChh--------hHHHHHHHHH
Q 002900 302 SSKPVLRFAAVRTLNK---------------------SLISDQNRSIATLAITTLLKTGNES--------SVDRLMKQIT 352 (869)
Q Consensus 302 s~~~n~ry~aL~~l~~---------------------~~L~d~d~sI~~~aL~lL~~l~~e~--------nv~~Il~eL~ 352 (869)
++++.+|..+++.+.. .+++|++..+|..|++.+..++... .+..++..+.
T Consensus 226 d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll 305 (852)
T 4fdd_A 226 DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 6677777666665543 3457888899999999998888643 3345666665
Q ss_pred Hhh-----------hh-----------ccHHHHHHHHHHHHHHHhhCCcc-HHHHHHHHHHHHhhcCCcchHHHHHHHHH
Q 002900 353 NFM-----------SD-----------IADEFKIVVVEAIRSLCLKFPLK-YRSLMNFLSNILREEGGFEYKKAIVDSIV 409 (869)
Q Consensus 353 ~y~-----------~~-----------~~~~~r~~~v~aI~~la~k~~~~-~~~~v~~ll~ll~~~g~~~~~~~iv~~i~ 409 (869)
..+ .+ .+...|..+..+++.++..+++. ...++.++.+++.+. +..++..++..+.
T Consensus 306 ~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg 384 (852)
T 4fdd_A 306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH-EWVVKESGILVLG 384 (852)
T ss_dssp HHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred HHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 555 22 11135888999999999887653 345677777777654 4567778887888
Q ss_pred HHHHhCCc----hHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCC------CChHHHHHHHHhhccCCCHHHHHHHH
Q 002900 410 ILIRDIPD----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT------SDPSKYIRYIYNRVHLENATVRAAAV 479 (869)
Q Consensus 410 ~ii~~~p~----~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~------~~~~~~l~~i~~~~~~e~~~vr~~~l 479 (869)
.+....++ .-..++..++..+.| ..+.++..++|.+|+++... ..-..++..+.+.+...++.||..+.
T Consensus 385 ~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~ 463 (852)
T 4fdd_A 385 AIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 463 (852)
T ss_dssp HTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 87764432 235677788888877 46788888999999987532 22345667777777677899999999
Q ss_pred HHHHHHhccc
Q 002900 480 STLAKFGAMV 489 (869)
Q Consensus 480 tal~Kl~~~~ 489 (869)
.++..+...+
T Consensus 464 ~aL~~l~~~~ 473 (852)
T 4fdd_A 464 SAFATLEEEA 473 (852)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.18 E-value=3.5e-09 Score=129.56 Aligned_cols=408 Identities=11% Similarity=0.102 Sum_probs=246.9
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH-----HHHHHH
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV-----KRWSNE 182 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v-----~~~~~~ 182 (869)
+..+.++|.++++.+|..|++.++.+....+....++.+.++|.+.++.||..|+.++..|....+... ...++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 567888899999999999999998876667777788888999999999999999999998876432211 134555
Q ss_pred HHHHhcC-CChhHHHHHHHHHHHHhhcCh--h------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCc-
Q 002900 183 VQEAVQS-RAALVQFHALALLHQIRQNDR--L------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD- 252 (869)
Q Consensus 183 l~~~l~d-~~~~v~~~al~ll~~i~~~d~--~------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~- 252 (869)
+.+.|.+ .++.+..+|+..|..+...+. . .+..|+.-+. ..++-.+...+..+..+... ++...
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~---~~~~~v~~~A~~aL~nLa~~---~~~~~~ 270 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG---SPVDSVLFHAITTLHNLLLH---QEGAKM 270 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHH---STTHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCC---ChhhHH
Confidence 5556653 478899999988888765421 1 1222333232 12344444455555443222 22222
Q ss_pred ----hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHh-----HhhHHHHHHHHHcCCCch-hHHHH---HHHhcc--
Q 002900 253 ----RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRE-----LTPAITVLQLFLSSSKPV-LRFAA---VRTLNK-- 317 (869)
Q Consensus 253 ----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~-----~~~a~~~L~~~L~s~~~n-~ry~a---L~~l~~-- 317 (869)
...++.+..+|++.+..|.-.|+.++..+....... -..++..|..++.+.++. .+..+ |..+..
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 350 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 350 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh
Confidence 234567777888877666666666655443111111 123455566666655443 22222 222211
Q ss_pred ----------------ccCCCCCHHHHHHHHHHhhccCChh----hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhC
Q 002900 318 ----------------SLISDQNRSIATLAITTLLKTGNES----SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF 377 (869)
Q Consensus 318 ----------------~~L~d~d~sI~~~aL~lL~~l~~e~----nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~ 377 (869)
.++.+.+..+++.++.+|..++... .+..++..|...+...+.+.+..++.+++.|+...
T Consensus 351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 5678888889999999888876432 34567777777777788899999999999998754
Q ss_pred CccHH-----HHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHhCCch---H-----HHHHHHHHHhhhccCchhHHHHHH
Q 002900 378 PLKYR-----SLMNFLSNILREEGGF-EYKKAIVDSIVILIRDIPDA---K-----ENGLLHLCEFIEDCEFTYLSTQIL 443 (869)
Q Consensus 378 ~~~~~-----~~v~~ll~ll~~~g~~-~~~~~iv~~i~~ii~~~p~~---~-----~~~l~~L~~~l~~~~~~~~~~~~l 443 (869)
+.... -.+..|+++|...++. .++..++..+..|....++. + ..++..|.+.+.+.....++..++
T Consensus 431 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~ 510 (780)
T 2z6g_A 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Confidence 33222 2467788888764432 56666676777776555553 1 235677888887655567888889
Q ss_pred hhhcCCCCCCCC--------h-HHHHHHHHhh----------------cc--CCCHHHHHHHHHHHHHHhccccCchH--
Q 002900 444 HFLGTEGPKTSD--------P-SKYIRYIYNR----------------VH--LENATVRAAAVSTLAKFGAMVDALKP-- 494 (869)
Q Consensus 444 ~ilGE~~~~~~~--------~-~~~l~~i~~~----------------~~--~e~~~vr~~~ltal~Kl~~~~~~l~~-- 494 (869)
|.|+..+....+ . ..++..+... +. ...+.++..++.++..++. .++.+.
T Consensus 511 ~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l 589 (780)
T 2z6g_A 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DIHNRIVI 589 (780)
T ss_dssp HHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-ChhhHHHH
Confidence 998887542111 1 1112222110 10 1135678888888888864 222222
Q ss_pred ---HHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 002900 495 ---RVFVLLRRCLYDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 495 ---~i~~ll~~~~~d~d~evrdRA~~yl~ll 522 (869)
.+...|...+.+.+.+||..|...+.-+
T Consensus 590 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L 620 (780)
T 2z6g_A 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620 (780)
T ss_dssp HHTCCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1245566677888999999988755444
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.14 E-value=5.4e-08 Score=113.00 Aligned_cols=403 Identities=12% Similarity=0.077 Sum_probs=222.3
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhh-----H--HHHHHHHHHHhcC-CChHHHHHHHHHHhhhcccChHHHH-
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTL-----L--TQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIVK- 177 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~-----~--~~l~~~i~~~l~d-~~p~VRk~A~lal~~L~~~~pe~v~- 177 (869)
++..|.+-|.++++.+|..|+.+|+++...+- . +..++.+.+.+.+ .++.+|+.|+.++.++.. .++...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHH
Confidence 46666667778888888888888887654221 1 1345566666654 478888888888888764 333222
Q ss_pred ----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh---------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhh
Q 002900 178 ----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL---------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIRE 244 (869)
Q Consensus 178 ----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~---------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~ 244 (869)
..++.+.+++.+.++.++..|+..|..+...++. .+..++.-+.. .++-......+.+..+...
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHhC
Confidence 3566777888888888888888888888754321 12223333321 1221222222222222111
Q ss_pred hcCCCCCch-----hhHHHHHHHHhcCCh-HHHHHHHHHHHhccCCCh--H-h-HhhHHHHHHHHHcCCCchhHHHHHHH
Q 002900 245 AATTQTGDR-----PFYDFLESCLRHKAE-MVIFEAARAITELNGVTN--R-E-LTPAITVLQLFLSSSKPVLRFAAVRT 314 (869)
Q Consensus 245 ~~~dp~~~~-----~l~~~l~~~L~~~~~-aV~~ea~~~i~~l~~~~~--~-~-~~~a~~~L~~~L~s~~~n~ry~aL~~ 314 (869)
++.... ..++.+..+|++.++ .+...+++++..+...+. . . ...++..|..++.++++.++..++.+
T Consensus 174 ---~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T 1jdh_A 174 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHH
Confidence 111111 224455556665544 345556666666643221 1 1 12456666667776666666555554
Q ss_pred hcc-------------------ccCCCCCHHHHHHHHHHhhccCCh--hhHHHH-----HHHHHHhhhh--ccHHHHHHH
Q 002900 315 LNK-------------------SLISDQNRSIATLAITTLLKTGNE--SSVDRL-----MKQITNFMSD--IADEFKIVV 366 (869)
Q Consensus 315 l~~-------------------~~L~d~d~sI~~~aL~lL~~l~~e--~nv~~I-----l~eL~~y~~~--~~~~~r~~~ 366 (869)
+.. .++.++|..++..+..+|..++.. ++...+ +..|...+.. .+.+.+..+
T Consensus 251 L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a 330 (529)
T 1jdh_A 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330 (529)
T ss_dssp HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHH
Confidence 422 456788889999999998888763 344433 3344444443 236899999
Q ss_pred HHHHHHHHhhCCccHH--------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH-----HHHHHHHHhhhcc
Q 002900 367 VEAIRSLCLKFPLKYR--------SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE-----NGLLHLCEFIEDC 433 (869)
Q Consensus 367 v~aI~~la~k~~~~~~--------~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~-----~~l~~L~~~l~~~ 433 (869)
+.+++.++...|.... -.+..+.++|.......+...+...+..+... |+.+. .++..|++.+.+
T Consensus 331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~- 408 (529)
T 1jdh_A 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR- 408 (529)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHH-
Confidence 9999999876555321 12566788887654334556666677777653 43333 356777777765
Q ss_pred CchhHHHHHHhhhcC--CCCCCCChHHH--------------------------HHHHHhhccCCCHHHHHHHHHHHHHH
Q 002900 434 EFTYLSTQILHFLGT--EGPKTSDPSKY--------------------------IRYIYNRVHLENATVRAAAVSTLAKF 485 (869)
Q Consensus 434 ~~~~~~~~~l~ilGE--~~~~~~~~~~~--------------------------l~~i~~~~~~e~~~vr~~~ltal~Kl 485 (869)
.+.+++..++|.++. +.... .+.++ +..+..-....++.+|..+..++..+
T Consensus 409 ~~~~v~~~a~~~l~n~~~~~~~-~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l 487 (529)
T 1jdh_A 409 AHQDTQRRTSMGGTQQQFVEGV-RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487 (529)
T ss_dssp HHHHHC-----------CBTTB-CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcccCchhhhccc-cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHH
Confidence 445677777887775 32211 11111 12222223344566777777776666
Q ss_pred hccccCchH-----HHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002900 486 GAMVDALKP-----RVFVLLRRCLYDGDDEVRDRATLYLN 520 (869)
Q Consensus 486 ~~~~~~l~~-----~i~~ll~~~~~d~d~evrdRA~~yl~ 520 (869)
... ++... .....|.....+.|++||.+|...+.
T Consensus 488 ~~~-~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 488 AQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526 (529)
T ss_dssp TTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred hcC-HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHH
Confidence 532 11111 12344555667777777777766544
No 19
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.12 E-value=9.9e-08 Score=117.67 Aligned_cols=468 Identities=10% Similarity=0.101 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCC-CccchhHHHHHHHHhCCC--cc------hhHhhhhHHHhhcC
Q 002900 46 CSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSR-DIGLRRMVYLMIKELSPS--AD------EVIIVTSSLMKDMT 116 (869)
Q Consensus 46 ~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~-d~~lKrl~Yl~l~~~~~~--~d------~~~Lvinsl~kDl~ 116 (869)
.+..+...|..+...+ ++......++..+..++.+. +...|..+...+..+... ++ ..--+...+.+-+.
T Consensus 111 vr~~~~~~l~~i~~~~-~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~ 189 (861)
T 2bpt_A 111 IANAAAQLIAAIADIE-LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQ 189 (861)
T ss_dssp HHHHHHHHHHHHHHHH-GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh-CcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhc
Confidence 3444666665554332 22224556788888888888 888877776666555432 11 23334455566667
Q ss_pred CC--CHHHHhHHHHHhccCC---Chh-----hHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH----H-HHHH
Q 002900 117 SK--TDMYRANAIRVLCRIT---DGT-----LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV----K-RWSN 181 (869)
Q Consensus 117 s~--n~~vr~lALr~L~~I~---~~~-----~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v----~-~~~~ 181 (869)
++ ++.+|..|+++++.+. ... ..+.+.+.+.+.+.+.++.||+.|+.++.++...+|+.+ . .+++
T Consensus 190 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~ 269 (861)
T 2bpt_A 190 STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYA 269 (861)
T ss_dssp TTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 8999999999998742 111 124577888888899999999999999998887666543 3 4555
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhhcC-----------------h----hHHHHHHHhh----ccCC---CCChhHH--
Q 002900 182 EVQEAVQSRAALVQFHALALLHQIRQND-----------------R----LAVSKLVTSL----TRGT---VRSPLAQ-- 231 (869)
Q Consensus 182 ~l~~~l~d~~~~v~~~al~ll~~i~~~d-----------------~----~~~~~li~~l----~~~~---~~~~~~~-- 231 (869)
.+...+.+.++.|...|+..+..+.... + ..+..+++.+ .... .-..|..
T Consensus 270 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~ 349 (861)
T 2bpt_A 270 LTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSM 349 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHH
Confidence 5566777888899999988877665421 0 0112233322 2100 0112322
Q ss_pred --HHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-H----hHhhHHHHHHHHHcCCC
Q 002900 232 --CLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTN-R----ELTPAITVLQLFLSSSK 304 (869)
Q Consensus 232 --v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~-~----~~~~a~~~L~~~L~s~~ 304 (869)
...+..+...+. ......+++.+...+++.+..+...|+.++..+..... . .+...+..|...+.+++
T Consensus 350 ~a~~~L~~l~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~ 424 (861)
T 2bpt_A 350 SAGACLQLFAQNCG-----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424 (861)
T ss_dssp HHHHHHHHHHHHHG-----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHHcc-----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 223333332111 22345677778888888888888899999887754321 2 23345566666778888
Q ss_pred chhHHHHHHHhcc-----------------------ccCCCCCHHHHHHHHHHhhccCCh----------hhHHHHHHHH
Q 002900 305 PVLRFAAVRTLNK-----------------------SLISDQNRSIATLAITTLLKTGNE----------SSVDRLMKQI 351 (869)
Q Consensus 305 ~n~ry~aL~~l~~-----------------------~~L~d~d~sI~~~aL~lL~~l~~e----------~nv~~Il~eL 351 (869)
+.+|..++.++.+ ..++|+ ..++..+...|..++.. ..+..|+..|
T Consensus 425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L 503 (861)
T 2bpt_A 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL 503 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 8899888776543 234554 66777766666554321 3456777777
Q ss_pred HHhhhh--ccHHHHHHHHHHHHHHHhhCCccHHHHHH----HHHHHHhhc--------------CCcchHHHHHHHHHHH
Q 002900 352 TNFMSD--IADEFKIVVVEAIRSLCLKFPLKYRSLMN----FLSNILREE--------------GGFEYKKAIVDSIVIL 411 (869)
Q Consensus 352 ~~y~~~--~~~~~r~~~v~aI~~la~k~~~~~~~~v~----~ll~ll~~~--------------g~~~~~~~iv~~i~~i 411 (869)
...+.+ .+.+.|..++.+++.++...+.....++. .+++.+... ....++..+...+..+
T Consensus 504 ~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l 583 (861)
T 2bpt_A 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAV 583 (861)
T ss_dssp HHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHH
Confidence 777763 33678999999999999988765444333 344444321 0112344566677777
Q ss_pred HHhCCc----hHHHHHHHHHHhhhccCchhHHHHHHhhhcCCC----CCC-CChHHHHHHHHhhccCCCHHHHHHHHHHH
Q 002900 412 IRDIPD----AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEG----PKT-SDPSKYIRYIYNRVHLENATVRAAAVSTL 482 (869)
Q Consensus 412 i~~~p~----~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~----~~~-~~~~~~l~~i~~~~~~e~~~vr~~~ltal 482 (869)
++..+. .-..++..+.+.+.+.....++..+++.+|... ... .--..++..+.+.+..+++.+|..++.++
T Consensus 584 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l 663 (861)
T 2bpt_A 584 IRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFI 663 (861)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 766543 234566666666665432134444444433221 111 01123455555555556777999888888
Q ss_pred HHHhcccc-CchH---HHHHHHHHhhcCC--CHHHHHHHHHHHH
Q 002900 483 AKFGAMVD-ALKP---RVFVLLRRCLYDG--DDEVRDRATLYLN 520 (869)
Q Consensus 483 ~Kl~~~~~-~l~~---~i~~ll~~~~~d~--d~evrdRA~~yl~ 520 (869)
..+....+ .+.+ .+...+-..+.+. +.++|..|...+.
T Consensus 664 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 664 ADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp HHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred HHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 77765543 3333 3333333444444 4889988876543
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.11 E-value=7e-08 Score=115.55 Aligned_cols=408 Identities=13% Similarity=0.086 Sum_probs=226.5
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhh-------HHHHHHHHHHHhcC-CChHHHHHHHHHHhhhcccChHHHH-
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTL-------LTQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIVK- 177 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~-------~~~l~~~i~~~l~d-~~p~VRk~A~lal~~L~~~~pe~v~- 177 (869)
++..|.+-|.++++.+|..|+++|+++...+- .+.+++.+.+.|.+ .++.||+.|+.++..|.. .++...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHH
Confidence 34555555667777777777777776543221 11345555555554 367777777777776554 233211
Q ss_pred ----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh---------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhh
Q 002900 178 ----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL---------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIRE 244 (869)
Q Consensus 178 ----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~---------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~ 244 (869)
..++.+.+++.+.++.++..|+.+|..+...+.. .+..|+.-+.. .++-.+....+.+..+...
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc---CCHHHHHHHHHHHHHHHhc
Confidence 2556666777777777777777777777644211 12223333321 1221122222222222111
Q ss_pred hcCCCCCch-----hhHHHHHHHHhcCC-hHHHHHHHHHHHhccCCCh---HhH-hhHHHHHHHHHcCCCchhHHHHHHH
Q 002900 245 AATTQTGDR-----PFYDFLESCLRHKA-EMVIFEAARAITELNGVTN---REL-TPAITVLQLFLSSSKPVLRFAAVRT 314 (869)
Q Consensus 245 ~~~dp~~~~-----~l~~~l~~~L~~~~-~aV~~ea~~~i~~l~~~~~---~~~-~~a~~~L~~~L~s~~~n~ry~aL~~ 314 (869)
++..+. ..++.+..+|++.+ ..+...|++++..+...+. ... ..++..|..++.++++.++..++.+
T Consensus 171 ---~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 171 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred ---CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111 22455556666544 3456667777766643221 111 2355666667776666666665554
Q ss_pred hcc-------------------ccCCCCCHHHHHHHHHHhhccCC--hhhHHH-----HHHHHHHhhhhcc--HHHHHHH
Q 002900 315 LNK-------------------SLISDQNRSIATLAITTLLKTGN--ESSVDR-----LMKQITNFMSDIA--DEFKIVV 366 (869)
Q Consensus 315 l~~-------------------~~L~d~d~sI~~~aL~lL~~l~~--e~nv~~-----Il~eL~~y~~~~~--~~~r~~~ 366 (869)
|.. .+++++|..++..+..+|..++. +.+... .+..|..++.+.+ .+.+..+
T Consensus 248 L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 248 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp HHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 422 45677888899999988888765 344443 3445555555433 6899999
Q ss_pred HHHHHHHHhhCCccH--H------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH-----HHHHHHHHhhhcc
Q 002900 367 VEAIRSLCLKFPLKY--R------SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE-----NGLLHLCEFIEDC 433 (869)
Q Consensus 367 v~aI~~la~k~~~~~--~------~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~-----~~l~~L~~~l~~~ 433 (869)
+.+++.++...+... . ..+..|.++|.......+..++...+..+... ++.+. .++..|++.+.+
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~Lv~lL~~- 405 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR- 405 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHHHHHHhc-
Confidence 999999987655321 1 24677888887654434666666677777653 33332 356677777765
Q ss_pred CchhHHHHHHhhhcC--CCCCCCChHH--------------------------HHHHHHhhccCCCHHHHHHHHHHHHHH
Q 002900 434 EFTYLSTQILHFLGT--EGPKTSDPSK--------------------------YIRYIYNRVHLENATVRAAAVSTLAKF 485 (869)
Q Consensus 434 ~~~~~~~~~l~ilGE--~~~~~~~~~~--------------------------~l~~i~~~~~~e~~~vr~~~ltal~Kl 485 (869)
...+++..++|.++. +.... ++.+ .+..+.+-+...++.+|..+..++.++
T Consensus 406 ~~~~vr~~a~~al~n~~~~~~~-~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 406 AHQDTQRRTSMGGTQQQFVEGV-RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484 (644)
T ss_dssp HHHHHTTC----------CCSS-CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cchhhhhHhhhccccchhcccc-cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 233444455665554 21111 1111 122333333456788998888888888
Q ss_pred hccccCchHHH-----HHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 002900 486 GAMVDALKPRV-----FVLLRRCLYDGDDEVRDRATLYLNTVGSD 525 (869)
Q Consensus 486 ~~~~~~l~~~i-----~~ll~~~~~d~d~evrdRA~~yl~ll~~~ 525 (869)
+.. ++.+..+ ...|...+.+.|++||..|...+.-+...
T Consensus 485 ~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 485 AQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 653 3222222 34667778899999999999877766554
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.11 E-value=2.5e-08 Score=116.26 Aligned_cols=356 Identities=15% Similarity=0.116 Sum_probs=202.4
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccCC--Ch-h----hH-HHHHHHHHHHhcCCC-hHHHHHHHHHHhhhcccChHHH
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRIT--DG-T----LL-TQIERYLKQAIVDKN-PVVASAALVSGIHLLQTTPEIV 176 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I~--~~-~----~~-~~l~~~i~~~l~d~~-p~VRk~A~lal~~L~~~~pe~v 176 (869)
..+..|.+-|.++|+.+|-.|+++|+++. .+ . ++ ..+++.+.+++.+.+ +.||..|+.++.++...+++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34566667778888888888888777652 11 1 11 125677777788776 8999999999998887766643
Q ss_pred H-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhH---------HHHHHHhhccCCCCChhHHHHHHHHHHHhh
Q 002900 177 K-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVI 242 (869)
Q Consensus 177 ~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~---------~~~li~~l~~~~~~~~~~~v~llr~l~~~~ 242 (869)
. ..++.+..++.+.++.|..+|+.+|..+...++.. +..|+.-+.. ..++-........+..+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE--HTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 3 36677788888888889999988888887654321 2233333321 123333333444444332
Q ss_pred hhhcCCCCCc----hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHh-----hHHHHHHHHHcCCCchhHHHHHH
Q 002900 243 REAATTQTGD----RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELT-----PAITVLQLFLSSSKPVLRFAAVR 313 (869)
Q Consensus 243 ~~~~~dp~~~----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-----~a~~~L~~~L~s~~~n~ry~aL~ 313 (869)
.. .|... ...++.|..+|++.+..|...|+.++..+...+..... .++..|..+|.++++.++..+++
T Consensus 232 ~~---~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 232 RG---KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp CS---SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred cC---CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 22 12221 34677888888899999999999999988644332211 23445555555555445444444
Q ss_pred HhccccCCCCCHHHHHHHHHHhhccCC--hhhHH-----HHHHHHHHhhhhc-cHHHHHHHHHHHHHHHhhCCccHHH--
Q 002900 314 TLNKSLISDQNRSIATLAITTLLKTGN--ESSVD-----RLMKQITNFMSDI-ADEFKIVVVEAIRSLCLKFPLKYRS-- 383 (869)
Q Consensus 314 ~l~~~~L~d~d~sI~~~aL~lL~~l~~--e~nv~-----~Il~eL~~y~~~~-~~~~r~~~v~aI~~la~k~~~~~~~-- 383 (869)
+ |-.++. +.... .++..|...+.+. +...+..++.+|+.++...+.....
T Consensus 309 ~--------------------L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~ 368 (528)
T 4b8j_A 309 T--------------------VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368 (528)
T ss_dssp H--------------------HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred H--------------------HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 433332 22221 1234444445444 5666777777777776532222222
Q ss_pred ---HHHHHHHHHhhcCCcchHHHHHHHHHHHHHh-CCchHH-----HHHHHHHHhhhccCchhHHHHHHhhhcCCCC---
Q 002900 384 ---LMNFLSNILREEGGFEYKKAIVDSIVILIRD-IPDAKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTEGP--- 451 (869)
Q Consensus 384 ---~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~-~p~~~~-----~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~--- 451 (869)
++..|+++|... +..++..++..+..+... .|+... .++..|++.+.+ ..+++...++|.|+....
T Consensus 369 ~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 369 NAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp HTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHH
Confidence 235566666543 445566666666666665 344332 345666666655 344554444444433211
Q ss_pred C-------CCC-------hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcc
Q 002900 452 K-------TSD-------PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAM 488 (869)
Q Consensus 452 ~-------~~~-------~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~ 488 (869)
. ..+ ....+..+.+-...+++.++..+...+-+++..
T Consensus 447 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 447 TDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 0 000 011233333323346888999888888888763
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.11 E-value=8.3e-09 Score=126.21 Aligned_cols=438 Identities=13% Similarity=0.083 Sum_probs=251.2
Q ss_pred HHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhh-------HHHHHHH
Q 002900 73 FAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTL-------LTQIERY 145 (869)
Q Consensus 73 ~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~-------~~~l~~~ 145 (869)
..+++.+++.+...|+-.--.+ .+........=++..|.+-|.++++.+|-.|+.+|++|...+- .+.+++.
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l-~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLI-NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp --------CCSCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHH-HhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 4455666777665554322122 1111112223356667777789999999999999999864321 1245566
Q ss_pred HHHHhcC-CChHHHHHHHHHHhhhcccChHH---H-H-HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh--------
Q 002900 146 LKQAIVD-KNPVVASAALVSGIHLLQTTPEI---V-K-RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-------- 211 (869)
Q Consensus 146 i~~~l~d-~~p~VRk~A~lal~~L~~~~pe~---v-~-~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~-------- 211 (869)
+.+.|.+ .++.+|+.|+.++.+|... ++- + + ..++.+.+++.+.++.++..|+.+|..++..+..
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~ 275 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc
Confidence 6666654 5899999999999997653 332 1 1 4677888899998999999999999999865321
Q ss_pred -HHHHHHHhhccCCCCChhHH---HHHHHHHHHhhhhhcCCCCCc-----hhhHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 002900 212 -AVSKLVTSLTRGTVRSPLAQ---CLLIRYTTQVIREAATTQTGD-----RPFYDFLESCLRHKAEMVI-FEAARAITEL 281 (869)
Q Consensus 212 -~~~~li~~l~~~~~~~~~~~---v~llr~l~~~~~~~~~dp~~~-----~~l~~~l~~~L~~~~~aV~-~ea~~~i~~l 281 (869)
.+..|+.-+.. .++-.. +..++.++. . ++..+ ...++.|..+|++.++..+ ..|+.++..+
T Consensus 276 g~v~~Lv~lL~~---~~~~v~~~a~~aL~~La~---~---~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 276 GGLQKMVALLNK---TNVKFLAITTDCLQILAY---G---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp THHHHHHHGGGC---CCHHHHHHHHHHHHHHHT---T---CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc---CCHHHHHHHHHHHHHHhc---C---ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 12233333331 121111 123333321 1 11111 1235566667777655443 3455555555
Q ss_pred cCCCh---Hh-HhhHHHHHHHHHcCCCchhHHHHHHHhcc-------------------ccCCCCCHHHHHHHHHHhhcc
Q 002900 282 NGVTN---RE-LTPAITVLQLFLSSSKPVLRFAAVRTLNK-------------------SLISDQNRSIATLAITTLLKT 338 (869)
Q Consensus 282 ~~~~~---~~-~~~a~~~L~~~L~s~~~n~ry~aL~~l~~-------------------~~L~d~d~sI~~~aL~lL~~l 338 (869)
...+. .. ...++..|..++.+.++.++..++.++.. .+|+++|..++..|..+|..+
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 32211 11 12355667777777666666555544322 457888999999999999888
Q ss_pred CCh--hhHHH-----HHHHHHHhhhhc--cHHHHHHHHHHHHHHHhhCCccH--H------HHHHHHHHHHhhcCCcchH
Q 002900 339 GNE--SSVDR-----LMKQITNFMSDI--ADEFKIVVVEAIRSLCLKFPLKY--R------SLMNFLSNILREEGGFEYK 401 (869)
Q Consensus 339 ~~e--~nv~~-----Il~eL~~y~~~~--~~~~r~~~v~aI~~la~k~~~~~--~------~~v~~ll~ll~~~g~~~~~ 401 (869)
+.. .+... .+..|...+.+. .++.+..++.+|+.|+...+... . ..+..|.++|.......+.
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~ 506 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 506 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHH
Confidence 653 34332 234444444432 24899999999999987655421 1 2366788888765443466
Q ss_pred HHHHHHHHHHHHhCCchH-----HHHHHHHHHhhhccCchhHHHHHHhhhcC--CCCCCC-----------------ChH
Q 002900 402 KAIVDSIVILIRDIPDAK-----ENGLLHLCEFIEDCEFTYLSTQILHFLGT--EGPKTS-----------------DPS 457 (869)
Q Consensus 402 ~~iv~~i~~ii~~~p~~~-----~~~l~~L~~~l~~~~~~~~~~~~l~ilGE--~~~~~~-----------------~~~ 457 (869)
.++...+..+.. .++.+ ..++..|++.+.+ ...+++..++|.++. +..... ++.
T Consensus 507 ~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~ 584 (780)
T 2z6g_A 507 KATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH 584 (780)
T ss_dssp HHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh
Confidence 666668888875 33333 2456777777765 233444455565554 211110 010
Q ss_pred --------HHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 002900 458 --------KYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPR-----VFVLLRRCLYDGDDEVRDRATLYLNTVGS 524 (869)
Q Consensus 458 --------~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~-----i~~ll~~~~~d~d~evrdRA~~yl~ll~~ 524 (869)
..+..+..-+...++.||..++.++..+... ++.+.. ....|...+.+.|.+||..|...+.-+..
T Consensus 585 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 0122334444456889999999999888642 322222 24456667889999999999986655544
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.10 E-value=3.8e-08 Score=114.89 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=127.2
Q ss_pred hHHHhhcCCCCHHHHhHHHHHhccCCC----h---hhH-HHHHHHHHHHhcCC-ChHHHHHHHHHHhhhcccChHHHH--
Q 002900 109 SSLMKDMTSKTDMYRANAIRVLCRITD----G---TLL-TQIERYLKQAIVDK-NPVVASAALVSGIHLLQTTPEIVK-- 177 (869)
Q Consensus 109 nsl~kDl~s~n~~vr~lALr~L~~I~~----~---~~~-~~l~~~i~~~l~d~-~p~VRk~A~lal~~L~~~~pe~v~-- 177 (869)
..|.+.|.++|+.+|-.|+.+|.++.. + .++ ..+++.+.+++.+. ++.||..|+.++..+....++...
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~ 169 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV 169 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 334444455555555555555554421 1 111 12345555555554 566666666666665554443322
Q ss_pred ---HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhH---------HHHHHHhhccCCCCChhHHHHHHHHHHHhhhhh
Q 002900 178 ---RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA 245 (869)
Q Consensus 178 ---~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~---------~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~ 245 (869)
..++.+..++.+.++.|..+|+.+|..+...++.. +..|+.-+.. .++-.....+..+..+....
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCC
Confidence 23444555555555566666666665555432111 1112221211 11212222222332221110
Q ss_pred cCCCCC----chhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHh-----hHHHHHHHHHcCCCchhHHHHHHHhc
Q 002900 246 ATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELT-----PAITVLQLFLSSSKPVLRFAAVRTLN 316 (869)
Q Consensus 246 ~~dp~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~-----~a~~~L~~~L~s~~~n~ry~aL~~l~ 316 (869)
+|.. ...+++.|..+|++.++.|...|+.++..+...+..... .++..|..++.++++.++..+++++.
T Consensus 247 --~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 247 --KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp --SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred --CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 1211 124566777788888888888888888877543332221 34455556666666666665555543
Q ss_pred c----------------------ccCCCCCHHHHHHHHHHhhccC--ChhhHHH-----HHHHHHHhhhhccHHHHHHHH
Q 002900 317 K----------------------SLISDQNRSIATLAITTLLKTG--NESSVDR-----LMKQITNFMSDIADEFKIVVV 367 (869)
Q Consensus 317 ~----------------------~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~-----Il~eL~~y~~~~~~~~r~~~v 367 (869)
. .+|.+++..++..|+.+|..++ ++..+.. ++..|...+.+.+.+.+..++
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 2 3345555556655555555554 3333322 233444444445555666666
Q ss_pred HHHHHHHhh
Q 002900 368 EAIRSLCLK 376 (869)
Q Consensus 368 ~aI~~la~k 376 (869)
.+|+.++..
T Consensus 405 ~aL~~l~~~ 413 (530)
T 1wa5_B 405 WAISNASSG 413 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666553
No 24
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=99.09 E-value=3.8e-09 Score=109.98 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=146.8
Q ss_pred CceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccC-CCCCCCCCceEEEEEecCCCCCccc
Q 002900 635 TEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPL-RSLPYDSPGQIFGAFEKPEGVPAVG 713 (869)
Q Consensus 635 ~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~-~~L~~~~~~~~~v~~~~~~~~~~~~ 713 (869)
....|++......|.|.+++.++|+. .++++++.+++..+.. ++.+.....+ ..|+||++..+.|.+.... .....
T Consensus 42 ~GLeI~g~f~r~~g~i~l~l~~~N~s-~~~is~faIQfNkNsF-GL~p~~~~~~~~~L~pgqs~~v~lpl~~~~-~~~~~ 118 (258)
T 2g30_A 42 KGLEISGTFTHRQGHIYMEMNFTNKA-LQHMTDFAIQFNKNSF-GVIPSTPLAIHTPLMPNQSIDVSLPLNTLG-PVMKM 118 (258)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEECS-SSCBCCCEEEECCBTT-CCEESSCCCCCSCBCTTCEEEEEEEEESCS-CBCCC
T ss_pred CcEEEEEEEEEeCCEEEEEEEEecCC-ccceeeeEEEEccccc-CcccCccccCCCccCCCCcEEEEEeeecCC-cccCC
Confidence 35567788888899999999999998 5799999999998776 5888765444 5699999877777765533 11111
Q ss_pred ccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCcccc-cccc--chHHHhhhcCCCceeEEEEeCCCCCCHHH
Q 002900 714 KFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMK-VGVS--NFRNAWESIGPDFERVDEYGLGPRESLAE 790 (869)
Q Consensus 714 ~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p-~~~~--~F~~~W~~l~~~~e~~~~~~l~~~~~~~~ 790 (869)
.....|...++. +.| ..+|. +++.+.-++.| ..++ +|.+.|+.+++.+|.+.++.- ..-+. +
T Consensus 119 ~p~~~LQVAIKt---n~~---vfYF~-------~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE~~~~i~~-~~~~~-~ 183 (258)
T 2g30_A 119 EPLNNLQVAVKN---NID---VFYFS-------CLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKE-CHLNA-D 183 (258)
T ss_dssp SSTTEEEEEEEC---SSC---EEEEE-------EECCGGGGBCSCCCCCHHHHHHHHHHSCGGGCEEEEETT-CCCCH-H
T ss_pred CCCchheeeeec---CCc---eEEEE-------eecCHHHhcCCcCccCHHHHHHHHhhCCCccceeEeccc-CcCCH-H
Confidence 122345566662 111 22333 34444445555 3353 799999999888887766653 33443 8
Q ss_pred HHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEEeeccCCCeeEEEEEEecCCcchHHHHHHHHh
Q 002900 791 AVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 867 (869)
Q Consensus 791 a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~~~~~~~~~~~~~~~vRs~~~~v~~~l~~~l~ 867 (869)
++.+.++..|+..+.+.+ + .+...+++++++.++..+|+.+++-.+ +-.+++++||++..++..+.+++.
T Consensus 184 ~i~~kL~~~nif~Va~r~-~---~~q~~ly~S~kt~n~i~vL~el~~~~~---~~~v~l~vks~~~~i~~li~~~~~ 253 (258)
T 2g30_A 184 TVSSKLQNNNVYTIAKRN-V---EGQDMLYQSLKLTNGIWILAELRIQPG---NPNYTLSLKCRAPEVSQYIYQVYD 253 (258)
T ss_dssp HHHHHHHHTTCEEEEEEE-E---TTEEEEEEEEEBTTSCEEEEEEEECSS---CSSEEEEEEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEEeec-C---CCCceEEEEEEccCCcEEEEEEEEccC---CCcEEEEEecCCchHHHHHHHHHH
Confidence 888999999999886542 2 235589999999778888888877433 224899999999999999988875
No 25
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.07 E-value=7.4e-08 Score=118.79 Aligned_cols=422 Identities=11% Similarity=0.069 Sum_probs=234.9
Q ss_pred HHhh-cCCCccchhHHHHHHHHhCCC--cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC------------------
Q 002900 76 TKLF-QSRDIGLRRMVYLMIKELSPS--ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT------------------ 134 (869)
Q Consensus 76 ~kl~-~s~d~~lKrl~Yl~l~~~~~~--~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~------------------ 134 (869)
+..+ .|+|...|+-+--++.++... ++-......-+.+ .+.++.+|-.|...|-+..
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~ 87 (861)
T 2bpt_A 10 LENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQ 87 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhh
Confidence 3445 677888888888888775432 2222222222221 2357889988888887753
Q ss_pred -ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhccc-ChH-HHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHhhcCh
Q 002900 135 -DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQT-TPE-IVKRWSNEVQEAVQSR-AALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 135 -~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~-~pe-~v~~~~~~l~~~l~d~-~~~v~~~al~ll~~i~~~d~ 210 (869)
+++..+.+...+.+.+.+.++.||++++.++..+... .|. .-..+++.+.+.+.+. ++.+...|+.++..+...-+
T Consensus 88 l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 3345556777777888899999999999999877643 232 2234556666777777 88888888888877765310
Q ss_pred -------hHHHHHHHhhc---cCCCCChhHHHHHHHHHHHhhhhhcCCCCC---chhhHHHHHHHHhcCChHHHHHHHHH
Q 002900 211 -------LAVSKLVTSLT---RGTVRSPLAQCLLIRYTTQVIREAATTQTG---DRPFYDFLESCLRHKAEMVIFEAARA 277 (869)
Q Consensus 211 -------~~~~~li~~l~---~~~~~~~~~~v~llr~l~~~~~~~~~dp~~---~~~l~~~l~~~L~~~~~aV~~ea~~~ 277 (869)
.....+++.+. .+...++-.....++.+..++..-..+... ...+++.+...+++.+..+.-.|+.+
T Consensus 168 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp TTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 01112222111 110012222223333333221100000000 01133333333333333444334433
Q ss_pred HHhccCCChHhH----h-hHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChh----------
Q 002900 278 ITELNGVTNREL----T-PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNES---------- 342 (869)
Q Consensus 278 i~~l~~~~~~~~----~-~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~---------- 342 (869)
+..+....+..+ . ..+..+. ..+.|.+..+|..+++.+..++...
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~--------------------~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTI--------------------ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHH--------------------HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 332210000000 0 0000000 2356777788888888777665432
Q ss_pred -------------hHHHHHHHHHHhhhhc-------cHHHHHHHHHHHHHHHhhCCc-cHHHHHHHHHHHHhhcCCcchH
Q 002900 343 -------------SVDRLMKQITNFMSDI-------ADEFKIVVVEAIRSLCLKFPL-KYRSLMNFLSNILREEGGFEYK 401 (869)
Q Consensus 343 -------------nv~~Il~eL~~y~~~~-------~~~~r~~~v~aI~~la~k~~~-~~~~~v~~ll~ll~~~g~~~~~ 401 (869)
.+..++..|...+.+. +...|..+...++.++..++. ....++.++.+.+.+ .+..++
T Consensus 308 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~r 386 (861)
T 2bpt_A 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA-DNWRNR 386 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC-SSHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC-CChhHH
Confidence 2245666666666532 236899999999999998874 345667777777764 345567
Q ss_pred HHHHHHHHHHHHhCC-ch----HHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCC-------CChHHHHHHHHhhccC
Q 002900 402 KAIVDSIVILIRDIP-DA----KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKT-------SDPSKYIRYIYNRVHL 469 (869)
Q Consensus 402 ~~iv~~i~~ii~~~p-~~----~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~-------~~~~~~l~~i~~~~~~ 469 (869)
+.++..+..+..... +. -+.++..|+..+.+ ..+.++..++|.+|.++... ..-..++..+.+.+..
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD 465 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc
Confidence 777777777765432 21 23456667777766 46778888999999876432 2344566666665544
Q ss_pred CCHHHHHHHHHHHHHHhcccc-----Cch---HHHHHHHHHhhc--CCCHHHHHHHHHHHHHh
Q 002900 470 ENATVRAAAVSTLAKFGAMVD-----ALK---PRVFVLLRRCLY--DGDDEVRDRATLYLNTV 522 (869)
Q Consensus 470 e~~~vr~~~ltal~Kl~~~~~-----~l~---~~i~~ll~~~~~--d~d~evrdRA~~yl~ll 522 (869)
++.||..+..++..+...++ .+. +.+...+...+. |.+.++|..|...+..+
T Consensus 466 -~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 466 -HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence 48899988888877765432 122 333434444444 44478988777654443
No 26
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.03 E-value=2e-07 Score=120.02 Aligned_cols=445 Identities=14% Similarity=0.139 Sum_probs=263.2
Q ss_pred hHHHHHhhcCCCccchhHHHHHHHHhCCCc------chhHhhhhHHHhhcCCCCHHHHhHHHHHhccCC---ChhhHHHH
Q 002900 72 FFAVTKLFQSRDIGLRRMVYLMIKELSPSA------DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRIT---DGTLLTQI 142 (869)
Q Consensus 72 f~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~------d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~---~~~~~~~l 142 (869)
+..+..-+.|+|...|++.--.+......+ +..--++..+.+-+.|+|+.+|..|+++|+.+. .+...+.+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445556678999999999876665544321 122345666888888999999999999888753 34567788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhcccChH----------HHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHhhcChh
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPE----------IVKRWSNEVQEAVQS-RAALVQFHALALLHQIRQNDRL 211 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe----------~v~~~~~~l~~~l~d-~~~~v~~~al~ll~~i~~~d~~ 211 (869)
.+.+.+.+.|.++.||..|+.|+..+....+. ..+.+++.+.+.+.+ .++.+...|+..|.++....+.
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 88999999999999999999999887754332 355778888888874 7789999999999888743211
Q ss_pred ----HHHHHH----HhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCC-hHH---HHHHHHHHH
Q 002900 212 ----AVSKLV----TSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKA-EMV---IFEAARAIT 279 (869)
Q Consensus 212 ----~~~~li----~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~-~aV---~~ea~~~i~ 279 (869)
-+..++ +.+. ...++.....++.+..+.... .+.....+++.+...|.+.+ ..+ .++++..+.
T Consensus 168 ~l~~~~~~ll~~l~~~L~---~~~~~vR~~a~~al~~l~~~~--~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 168 LLVNFHPSILTCLLPQLT---SPRLAVRKRTIIALGHLVMSC--GNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp SCTTTHHHHHHHHGGGGG---CSSHHHHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 122233 3333 245666666666666553321 12223445666666665432 222 344444444
Q ss_pred hccCC-ChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc---------------------ccCC-CC-------------
Q 002900 280 ELNGV-TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK---------------------SLIS-DQ------------- 323 (869)
Q Consensus 280 ~l~~~-~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~---------------------~~L~-d~------------- 323 (869)
..... -...+...+..+...+.+.++.+|-.++..+.. ..+. |+
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 32100 001223556666666767777777666555432 1221 10
Q ss_pred -----------------------CHHHHHHHHHHhhccCC--h----hhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 002900 324 -----------------------NRSIATLAITTLLKTGN--E----SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLC 374 (869)
Q Consensus 324 -----------------------d~sI~~~aL~lL~~l~~--e----~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la 374 (869)
...+|+.|++.|-.++. . .-+..++..+..++.+.+.+.|..++.+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 01357777776655543 1 223345556666677778899999999999888
Q ss_pred hhCCc-----------------------cHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCch----HHHHHHHHH
Q 002900 375 LKFPL-----------------------KYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDA----KENGLLHLC 427 (869)
Q Consensus 375 ~k~~~-----------------------~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~----~~~~l~~L~ 427 (869)
..... ....++..+.+.+.+. ...++..++..+..++...|+. -+.++..+.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~ 481 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK-SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGII 481 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHH
Confidence 75432 1123344455556643 3346677888888888876532 356677777
Q ss_pred HhhhccCc-hhHHHHHHhhhc----CCCCCCCCh--HHHHHHHHhhccCCCHHHHHHHHHHHHHHhccc-c-------Cc
Q 002900 428 EFIEDCEF-TYLSTQILHFLG----TEGPKTSDP--SKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV-D-------AL 492 (869)
Q Consensus 428 ~~l~~~~~-~~~~~~~l~ilG----E~~~~~~~~--~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~-~-------~l 492 (869)
+.+.+... ..++..++-.++ .+++..-.| ..++..++..+...+..||..++.++..+.... + .+
T Consensus 482 ~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 561 (1230)
T 1u6g_C 482 FSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA 561 (1230)
T ss_dssp HHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 77776432 233333222222 222210001 123444555555567788887777777665321 1 33
Q ss_pred hH---HHHHHHHHhh--cCCCHHHHHHHHHHHHHh
Q 002900 493 KP---RVFVLLRRCL--YDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 493 ~~---~i~~ll~~~~--~d~d~evrdRA~~yl~ll 522 (869)
.+ .+...+-..+ .|.+.++|+.|...+..+
T Consensus 562 ~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 562 TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 33 3333333344 678899999998765554
No 27
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.03 E-value=6.7e-09 Score=123.47 Aligned_cols=357 Identities=14% Similarity=0.087 Sum_probs=230.7
Q ss_pred HHHHHHHHhcCCCCCccchhhh-hHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhc--CCCCHHHHhHH
Q 002900 50 ITKLLYLLNQGETFTKIEATEV-FFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDM--TSKTDMYRANA 126 (869)
Q Consensus 50 l~kli~l~~~G~~~~~~e~s~l-f~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl--~s~n~~vr~lA 126 (869)
+||+.|+...-.--++-|...+ --.+.|=++++|+..|-+.-=+++.+. .++.+--+...+.+-+ .|++|++|--|
T Consensus 90 ~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-~~e~~~~l~~~v~~~l~~~d~~~~VRK~A 168 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-SREMAEAFAGEIPKILVAGDTMDSVKQSA 168 (621)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-CHHHHHHHTTHHHHHHHCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 6788887664321111232222 223445668899888777777776664 3566677888999999 99999999877
Q ss_pred HHHhccCC--ChhhHH--HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH----HHHHHHHHHHhcCC--------
Q 002900 127 IRVLCRIT--DGTLLT--QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV----KRWSNEVQEAVQSR-------- 190 (869)
Q Consensus 127 Lr~L~~I~--~~~~~~--~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v----~~~~~~l~~~l~d~-------- 190 (869)
+-++.++- .|+.++ .+.+.+.++|.|++|.|+..|+.++..+.+.+|+.. ..++..+..++...
T Consensus 169 ~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~ 248 (621)
T 2vgl_A 169 ALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYT 248 (621)
T ss_dssp HHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTE
T ss_pred HHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchh
Confidence 77776643 467777 788899999999999999999999999998888743 34555555554322
Q ss_pred -----ChhHHHHHHHHHHHHhhc-ChhHHHH-------HHHhhccCCC-------CC--hhHHHHHHHHHHHhhhhhcCC
Q 002900 191 -----AALVQFHALALLHQIRQN-DRLAVSK-------LVTSLTRGTV-------RS--PLAQCLLIRYTTQVIREAATT 248 (869)
Q Consensus 191 -----~~~v~~~al~ll~~i~~~-d~~~~~~-------li~~l~~~~~-------~~--~~~~v~llr~l~~~~~~~~~d 248 (869)
+|-.+...+.+|..+.+. |+....+ +++..... . .+ .-.....++.+..+ . .+
T Consensus 249 ~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~-~ks~~l~~~n~~~aVl~ea~~~i~~l--~--~~ 323 (621)
T 2vgl_A 249 YYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP-PKSKKVQHSNAKNAVLFEAISLIIHH--D--SE 323 (621)
T ss_dssp ETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC-CSCSSHHHHHHHHHHHHHHHHHHHHH--C--CC
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC-cccccccccchHHHHHHHHHHHHHhc--C--Cc
Confidence 566666666666555543 4332222 22211100 0 01 12333445555432 1 13
Q ss_pred CCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCCh--HhHhhHHHHHHHHHc-CCCchhHHHHHHHhcc--------
Q 002900 249 QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTN--RELTPAITVLQLFLS-SSKPVLRFAAVRTLNK-------- 317 (869)
Q Consensus 249 p~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~--~~~~~a~~~L~~~L~-s~~~n~ry~aL~~l~~-------- 317 (869)
|.......+.+..+|.++++.+.|-|.+.+..+....+ .........+-..|. ++|..+|..+|+.+..
T Consensus 324 ~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~ 403 (621)
T 2vgl_A 324 PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQ 403 (621)
T ss_dssp HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHH
Confidence 33445667788888888889999999999987743221 233333333334456 8888899999988765
Q ss_pred -------ccCCCCCHHHHHHHHHHhhccCCh--hhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 002900 318 -------SLISDQNRSIATLAITTLLKTGNE--SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388 (869)
Q Consensus 318 -------~~L~d~d~sI~~~aL~lL~~l~~e--~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~l 388 (869)
.++.+.|..+|+.++..+..++.. .+....++-|.+++....+.++.+++..+..+..+.|......+..+
T Consensus 404 ~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l 483 (621)
T 2vgl_A 404 QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTV 483 (621)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHH
Confidence 455677888888887766665532 34555666666666655556778889999999998898888888888
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhC
Q 002900 389 SNILREEGGFEYKKAIVDSIVILIRDI 415 (869)
Q Consensus 389 l~ll~~~g~~~~~~~iv~~i~~ii~~~ 415 (869)
.+.+.+.. .++.++.+...++-.+
T Consensus 484 ~~~l~~~~---~~~~li~~~~wilGEy 507 (621)
T 2vgl_A 484 FEALQAPA---CHENLVKVGGYILGEF 507 (621)
T ss_dssp HHHHTSSS---CCHHHHHHHHHHHHHH
T ss_pred HHHHcCcc---chHHHHHHHHHHhcch
Confidence 88887533 2334444444555544
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.02 E-value=5.5e-08 Score=113.53 Aligned_cols=350 Identities=12% Similarity=0.112 Sum_probs=211.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhccc--ChH---HHH-HHHHHHHHHhcCC-ChhHHHHHHHHHHHHhhcChhH---
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQT--TPE---IVK-RWSNEVQEAVQSR-AALVQFHALALLHQIRQNDRLA--- 212 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~~--~pe---~v~-~~~~~l~~~l~d~-~~~v~~~al~ll~~i~~~d~~~--- 212 (869)
++.+.+.|.+.++.+|..|+.++.++... +|. ++. ..++.+.+++.+. ++.++..|+..|..+...++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55566677888999999999999998754 332 222 5778888899886 8999999999999988754321
Q ss_pred ------HHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCc-----hhhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 213 ------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-----RPFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 213 ------~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~-----~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
+..|+.-+. ..++......+..+..+... +|... ...++.|..+|++.+..|...|+.++..+
T Consensus 169 ~~~~g~i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 169 VVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGD---STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCC---CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 222222222 12344444444444443211 12111 23456666677776667777777777665
Q ss_pred cCCC-----hHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCC--hhhHH-----HHHH
Q 002900 282 NGVT-----NRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGN--ESSVD-----RLMK 349 (869)
Q Consensus 282 ~~~~-----~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~--e~nv~-----~Il~ 349 (869)
.... ......++..|..++.++ |..++..++.+|..++. +..+. .++.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~--------------------d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSM--------------------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCC--------------------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCC--------------------CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 3211 111223444444444444 44455555555444432 22222 2455
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHhhCCccHH-----HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH----
Q 002900 350 QITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR-----SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE---- 420 (869)
Q Consensus 350 eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~-----~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~---- 420 (869)
.|..++.+.+...+..++.+++.++...+.... -++..++++|... ...++..++..+..+....++...
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666677777788899999999999865443322 2456677777754 445666666678877765554432
Q ss_pred -HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC-hH--H------HHHHHHhhccCCCHHHHHHHHHHHHHHhcccc
Q 002900 421 -NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD-PS--K------YIRYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (869)
Q Consensus 421 -~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~-~~--~------~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~ 490 (869)
.++..|++.+.+ ..++++..++|.||........ |. . .+..+..-+...++.+|..++.++.++....+
T Consensus 382 ~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 382 ANLIPPLVKLLEV-AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp TTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 356677777765 4567888888888876432111 01 1 23344444445688999999999998876543
Q ss_pred Cc-----------hHH-----HHHHHHHhhcCCCHHHHHHHHHHHH
Q 002900 491 AL-----------KPR-----VFVLLRRCLYDGDDEVRDRATLYLN 520 (869)
Q Consensus 491 ~l-----------~~~-----i~~ll~~~~~d~d~evrdRA~~yl~ 520 (869)
.. ... ....+.....+.+.+|+++|...+.
T Consensus 461 ~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 461 ADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp HHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred hhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 111 2334555678889999999986544
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.97 E-value=1.2e-07 Score=107.49 Aligned_cols=299 Identities=12% Similarity=0.069 Sum_probs=210.3
Q ss_pred hHHHHHhhcCCCccchhHHHHHHHHhCC---Ccc--hhH---hhhhHHHhhcCCC-CHHHHhHHHHHhccCCC--hhhH-
Q 002900 72 FFAVTKLFQSRDIGLRRMVYLMIKELSP---SAD--EVI---IVTSSLMKDMTSK-TDMYRANAIRVLCRITD--GTLL- 139 (869)
Q Consensus 72 f~~v~kl~~s~d~~lKrl~Yl~l~~~~~---~~d--~~~---Lvinsl~kDl~s~-n~~vr~lALr~L~~I~~--~~~~- 139 (869)
...+++.++|+|...|..+...+..+.. .+. ..+ =++..|.+-|.++ ++.+|-.|+++|+++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4566777888999999888888866531 221 111 2456677777888 89999999999999865 3322
Q ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcC-CChhHHHHHHHHHHHHhhcC
Q 002900 140 ----TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQS-RAALVQFHALALLHQIRQND 209 (869)
Q Consensus 140 ----~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d-~~~~v~~~al~ll~~i~~~d 209 (869)
..+.+.+.+.+.+.++.||..|+.++..+....++.-. ..++.+..++.+ .++.+..+|+.+|..+....
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 23678888999999999999999999999987765332 356777888875 68899999999999888543
Q ss_pred -h--------hHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCC-----chhhHHHHHHHHhcCChHHHHHHH
Q 002900 210 -R--------LAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTG-----DRPFYDFLESCLRHKAEMVIFEAA 275 (869)
Q Consensus 210 -~--------~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~-----~~~l~~~l~~~L~~~~~aV~~ea~ 275 (869)
+ ..+..++.-+. ..++.........+..+... .+.. ....++.+..+|++.+..|...|+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 255 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDG---PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSS---SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCC---CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHH
Confidence 1 12333333333 12344444444444433211 1111 123567788888889999999999
Q ss_pred HHHHhccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhcc----------------------ccCCCCCHHHH
Q 002900 276 RAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIA 328 (869)
Q Consensus 276 ~~i~~l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~----------------------~~L~d~d~sI~ 328 (869)
.++..+........ ..++..|..++.++++.+|..++.++.. .++.+++..+|
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99998864333221 2467788888988888999888777643 44577888999
Q ss_pred HHHHHHhhccC---ChhhHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHhh
Q 002900 329 TLAITTLLKTG---NESSVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLCLK 376 (869)
Q Consensus 329 ~~aL~lL~~l~---~e~nv~~-----Il~eL~~y~~~~~~~~r~~~v~aI~~la~k 376 (869)
..|..+|..++ +++.+.. ++..|...+.+.+.+.+..++.++..++..
T Consensus 336 ~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 336 KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999988885 4455553 455667777777889999999999999875
No 30
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.96 E-value=2.3e-06 Score=105.63 Aligned_cols=430 Identities=12% Similarity=0.073 Sum_probs=249.0
Q ss_pred chhhhhHHHHHhhcCC--CccchhHHHHHHHHhCCC--c----chhHhhhhHHHhhcCCC--CHHHHhHHHHHhccCCC-
Q 002900 67 EATEVFFAVTKLFQSR--DIGLRRMVYLMIKELSPS--A----DEVIIVTSSLMKDMTSK--TDMYRANAIRVLCRITD- 135 (869)
Q Consensus 67 e~s~lf~~v~kl~~s~--d~~lKrl~Yl~l~~~~~~--~----d~~~Lvinsl~kDl~s~--n~~vr~lALr~L~~I~~- 135 (869)
....++..+..++.++ +...|+.+...+..+... + ...--+...+.+-+.++ ++.+|..|+++++.+..
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556777788888888 888888777666555432 1 12233445566666666 78999999999987542
Q ss_pred --hhh-----HHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHH
Q 002900 136 --GTL-----LTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLH 203 (869)
Q Consensus 136 --~~~-----~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~ 203 (869)
..+ .+.+.+.+.+.+.+.++.||+.|+-++..+...+|+.+. .+++.+...+.+.++.|...|+..+.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 111 134677778888899999999999999988877765433 45555555667778888888887776
Q ss_pred HHhhcCh---------------------h----HHHHHHHhh----ccC---CCCChhH----HHHHHHHHHHhhhhhcC
Q 002900 204 QIRQNDR---------------------L----AVSKLVTSL----TRG---TVRSPLA----QCLLIRYTTQVIREAAT 247 (869)
Q Consensus 204 ~i~~~d~---------------------~----~~~~li~~l----~~~---~~~~~~~----~v~llr~l~~~~~~~~~ 247 (869)
.+..... . .+..+++.+ ... ..-..|. -..++..+...+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---- 360 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG----
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc----
Confidence 6653210 0 112222211 100 0011232 1233333332211
Q ss_pred CCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-Hh----HhhHHHHHHHHHcCCCchhHHHHHHHhccccCCC
Q 002900 248 TQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTN-RE----LTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISD 322 (869)
Q Consensus 248 dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~-~~----~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d 322 (869)
......+++.+...+++.+..+...|+.++..+..... .. +..++..+...+.++++.+|..++.++
T Consensus 361 -~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l------- 432 (876)
T 1qgr_A 361 -DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV------- 432 (876)
T ss_dssp -GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH-------
T ss_pred -HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------
Confidence 11233455566666667777777777777776643221 21 223333344444444444554444444
Q ss_pred CCHHHHHHHHHHhhccC--------ChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhC-----------------
Q 002900 323 QNRSIATLAITTLLKTG--------NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKF----------------- 377 (869)
Q Consensus 323 ~d~sI~~~aL~lL~~l~--------~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~----------------- 377 (869)
-+++ .+..+..++..|...+.+ +...|..++.+++.++...
T Consensus 433 -------------~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~ 498 (876)
T 1qgr_A 433 -------------GRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYC 498 (876)
T ss_dssp -------------HHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCS
T ss_pred -------------HHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchh
Confidence 3332 235677888888887766 4778889999999988753
Q ss_pred -CccHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHhCCchHHH----HHHHHHHhhhcc----------Cc----h
Q 002900 378 -PLKYRSLMNFLSNILREEG--GFEYKKAIVDSIVILIRDIPDAKEN----GLLHLCEFIEDC----------EF----T 436 (869)
Q Consensus 378 -~~~~~~~v~~ll~ll~~~g--~~~~~~~iv~~i~~ii~~~p~~~~~----~l~~L~~~l~~~----------~~----~ 436 (869)
.+....++..+++++.... ...++..+.+.+..++...+.-... .+..+.+.+... .+ +
T Consensus 499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 2445677777777776532 2346677788888888876643333 333333333321 11 3
Q ss_pred hHHHHHHhhhcCCCCCCC------ChHHHHHHHHhhccCCC--HHHHHHHHHHHHHHhcccc----CchHHHHHHHHHhh
Q 002900 437 YLSTQILHFLGTEGPKTS------DPSKYIRYIYNRVHLEN--ATVRAAAVSTLAKFGAMVD----ALKPRVFVLLRRCL 504 (869)
Q Consensus 437 ~~~~~~l~ilGE~~~~~~------~~~~~l~~i~~~~~~e~--~~vr~~~ltal~Kl~~~~~----~l~~~i~~ll~~~~ 504 (869)
+++..+++.++....... -...++..+.+.+...+ +.+|..++.++..++...+ ...+.+...+..++
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 658 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL 658 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344555666555433322 12345555555444332 3678888888777765422 22244555666666
Q ss_pred cCC-CHHHHHHHHHHHHHh
Q 002900 505 YDG-DDEVRDRATLYLNTV 522 (869)
Q Consensus 505 ~d~-d~evrdRA~~yl~ll 522 (869)
.+. ++++|..|...+.-+
T Consensus 659 ~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 659 KNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHCTTHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHH
Confidence 665 799999888755444
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.96 E-value=5.5e-07 Score=104.57 Aligned_cols=234 Identities=14% Similarity=0.079 Sum_probs=147.3
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhH---
Q 002900 142 IERYLKQAIVD-KNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA--- 212 (869)
Q Consensus 142 l~~~i~~~l~d-~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~--- 212 (869)
+++.+.++|.+ .+|.|+..|+-|+..|...+++..+ ..++.+..+|.+.++.|..+|+.+|..|..+.+..
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666653 4577777777777777666665433 24566677777777777777777777776543221
Q ss_pred ------HHHHHHhhccCC--CCChhHHHHHHHHHHHhhhhhcCCCCC----chhhHHHHHHHHhcCChHHHHHHHHHHHh
Q 002900 213 ------VSKLVTSLTRGT--VRSPLAQCLLIRYTTQVIREAATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITE 280 (869)
Q Consensus 213 ------~~~li~~l~~~~--~~~~~~~v~llr~l~~~~~~~~~dp~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~ 280 (869)
+..++.-+.... .......-.....+..+... .+|.. ...+++.|..+|++.++-|...|+.++.+
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~--~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN--KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC--CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc--ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 122232222100 01111111112222221111 11221 13466778888999999999999999998
Q ss_pred ccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhcc----------------------ccCCCCCHHHHHHHHH
Q 002900 281 LNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQNRSIATLAIT 333 (869)
Q Consensus 281 l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~----------------------~~L~d~d~sI~~~aL~ 333 (869)
+...+.... ..++..|..+|.+++..++..+++++.. .++++++..|++.|.-
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 865443322 2356678888998888888888777643 5678889999999999
Q ss_pred HhhccC--ChhhHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHhhC
Q 002900 334 TLLKTG--NESSVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLCLKF 377 (869)
Q Consensus 334 lL~~l~--~e~nv~~-----Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~ 377 (869)
+|..++ ++.+... ++..|...+.+.+.+.|.+++.+|+.++..-
T Consensus 339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 988875 4555543 3455666777788899999999999998753
No 32
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.96 E-value=5.6e-07 Score=115.84 Aligned_cols=451 Identities=12% Similarity=0.126 Sum_probs=264.6
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHhcCC-CCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cc-hhHhhhhH
Q 002900 34 RVFNDPQLDPRRCSQVITKLLYLLNQGE-TFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-AD-EVIIVTSS 110 (869)
Q Consensus 34 r~f~~~~~~~~k~~~~l~kli~l~~~G~-~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d-~~~Lvins 110 (869)
.++.+++.+.| +.++..+.-.+.... ..+......+...+.+.+.+++...|+.+...+..++.. ++ ..--+.+.
T Consensus 13 ~~l~s~d~~~R--~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~ 90 (1230)
T 1u6g_C 13 EKMTSSDKDFR--FMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDT 90 (1230)
T ss_dssp HHTTCSSHHHH--HHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HhcCCCCHhHH--HHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35555544444 555555554332221 111111335666777888999999999999999888764 33 34457788
Q ss_pred HHhhcCCCCHHHHhHHHHHhccCC---Chh---------hHHHHHHHHHHHhcC-CChHHHHHHHHHHhhhcccChH---
Q 002900 111 LMKDMTSKTDMYRANAIRVLCRIT---DGT---------LLTQIERYLKQAIVD-KNPVVASAALVSGIHLLQTTPE--- 174 (869)
Q Consensus 111 l~kDl~s~n~~vr~lALr~L~~I~---~~~---------~~~~l~~~i~~~l~d-~~p~VRk~A~lal~~L~~~~pe--- 174 (869)
+.+-+.|+++.+|..|.++|+.|. .++ ..+.+.+.+.+++.+ .++.||..|+.++..+....++
T Consensus 91 Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~ 170 (1230)
T 1u6g_C 91 LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV 170 (1230)
T ss_dssp HHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH
Confidence 888899999999988888887653 222 578899999999984 8899999999999987743322
Q ss_pred -HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChh-----HHHHHHHhhccCC-CCChhHHHHHHHHHHHhhhhhcC
Q 002900 175 -IVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRL-----AVSKLVTSLTRGT-VRSPLAQCLLIRYTTQVIREAAT 247 (869)
Q Consensus 175 -~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~-----~~~~li~~l~~~~-~~~~~~~v~llr~l~~~~~~~~~ 247 (869)
....+++.+...+.+.++.|...|+..+..+...-+. .+..++..+.... ....-..+..+-.+....+. ..
T Consensus 171 ~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~ 249 (1230)
T 1u6g_C 171 NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RI 249 (1230)
T ss_dssp TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GG
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HH
Confidence 3457788888888898999999999888877654221 1334444332110 01111234444444332111 11
Q ss_pred CCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhcc---CCC-hHhHhhHHHHHHHHHcC---------------------
Q 002900 248 TQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN---GVT-NRELTPAITVLQLFLSS--------------------- 302 (869)
Q Consensus 248 dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~---~~~-~~~~~~a~~~L~~~L~s--------------------- 302 (869)
.| ....+++.+...+++.++.|.-.|+.++..+. ... ...+...+..+...+..
T Consensus 250 ~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~ 328 (1230)
T 1u6g_C 250 GE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGG 328 (1230)
T ss_dssp TT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------
T ss_pred HH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccccc
Confidence 22 34567777777777766655444444443221 100 11222233322222210
Q ss_pred ----------------CCchhHHHHHHHhcc---------------------ccCCCCCHHHHHHHHHHhhccCCh----
Q 002900 303 ----------------SKPVLRFAAVRTLNK---------------------SLISDQNRSIATLAITTLLKTGNE---- 341 (869)
Q Consensus 303 ----------------~~~n~ry~aL~~l~~---------------------~~L~d~d~sI~~~aL~lL~~l~~e---- 341 (869)
....+|..|+..+.. ..+.|.+..+|.-++..+..++..
T Consensus 329 ~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 408 (1230)
T 1u6g_C 329 DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPV 408 (1230)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC
T ss_pred ccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccc
Confidence 011346666554432 345788888998888876554321
Q ss_pred -----------------hhHH----HHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc----cHHHHHHHHHHHHhhcC
Q 002900 342 -----------------SSVD----RLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL----KYRSLMNFLSNILREEG 396 (869)
Q Consensus 342 -----------------~nv~----~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~----~~~~~v~~ll~ll~~~g 396 (869)
..+. .|+.-+...+.+.+...|..++..++.++...+. ....++..+++.|.+..
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~ 488 (1230)
T 1u6g_C 409 QSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS 488 (1230)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSS
T ss_pred cccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCC
Confidence 1223 3444444447777788899999999999987664 34567777777777543
Q ss_pred C-cchHHHHHHHHHHHHHhC-Cch----HHHHHHHHHHhhhccCchhHHHHHHhhhcCC----CC---C-CCC--h--HH
Q 002900 397 G-FEYKKAIVDSIVILIRDI-PDA----KENGLLHLCEFIEDCEFTYLSTQILHFLGTE----GP---K-TSD--P--SK 458 (869)
Q Consensus 397 ~-~~~~~~iv~~i~~ii~~~-p~~----~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~----~~---~-~~~--~--~~ 458 (869)
. ..++.++...+..++... |+. -..++..|...+.+. ...++..+++.+++. ++ . ... | ..
T Consensus 489 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 567 (1230)
T 1u6g_C 489 SSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP-FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD 567 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH
Confidence 2 246667777777777643 331 223566666666663 333333333333322 21 1 111 1 23
Q ss_pred HHHHHHhhc--cCCCHHHHHHHHHHHHHHhccc
Q 002900 459 YIRYIYNRV--HLENATVRAAAVSTLAKFGAMV 489 (869)
Q Consensus 459 ~l~~i~~~~--~~e~~~vr~~~ltal~Kl~~~~ 489 (869)
++..+.+.+ ...++.+|..++.++..++...
T Consensus 568 ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 568 LFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 445555555 4567899999988888887654
No 33
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.94 E-value=1.9e-06 Score=106.45 Aligned_cols=403 Identities=13% Similarity=0.055 Sum_probs=226.3
Q ss_pred CCCHHHHhHHHHHhccC---CChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh-HH----HHHHHHHHHHHhc
Q 002900 117 SKTDMYRANAIRVLCRI---TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP-EI----VKRWSNEVQEAVQ 188 (869)
Q Consensus 117 s~n~~vr~lALr~L~~I---~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p-e~----v~~~~~~l~~~l~ 188 (869)
+.+..+|-.|..+|+.+ ....+++.+.+.+.+.+.|.++.||..|+.++..+....+ +. +..+++.+...++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~ 418 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44567776666666543 3456788899999999999999999999999998886543 43 3456777788889
Q ss_pred CCChhHHHHHHHHHHHHhhcCh------hHHHHHHHhhc--cCCCCChhHHHHHHHHHHHhhhhhc--------------
Q 002900 189 SRAALVQFHALALLHQIRQNDR------LAVSKLVTSLT--RGTVRSPLAQCLLIRYTTQVIREAA-------------- 246 (869)
Q Consensus 189 d~~~~v~~~al~ll~~i~~~d~------~~~~~li~~l~--~~~~~~~~~~v~llr~l~~~~~~~~-------------- 246 (869)
|.++.|...|+.++..+...-+ ..+..+++.+. -. .. +-.+....+.+..+.....
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 496 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 9999999888888877764321 22334444322 01 11 3223333333332221100
Q ss_pred --CCCCCchhhHHHHHHHHhcCC---h---HHHHHHHHHHHhccCC-ChHhHhhHHHHHHHHHc-----------CCC--
Q 002900 247 --TTQTGDRPFYDFLESCLRHKA---E---MVIFEAARAITELNGV-TNRELTPAITVLQLFLS-----------SSK-- 304 (869)
Q Consensus 247 --~dp~~~~~l~~~l~~~L~~~~---~---aV~~ea~~~i~~l~~~-~~~~~~~a~~~L~~~L~-----------s~~-- 304 (869)
..| ....+++.+..++.... . ..+++|+..+...... ........+..+...+. ..+
T Consensus 497 ~~l~~-~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~ 575 (876)
T 1qgr_A 497 YCLSS-SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRI 575 (876)
T ss_dssp CSSTT-THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHH
T ss_pred hhhhH-hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHH
Confidence 111 23456666666665532 2 3467777766643211 11111122222111111 111
Q ss_pred --chhHHHHHHHh-------c-c--------------ccCCCCC--HHHHHHHHHHhhccCC------hhhHHHHHHHHH
Q 002900 305 --PVLRFAAVRTL-------N-K--------------SLISDQN--RSIATLAITTLLKTGN------ESSVDRLMKQIT 352 (869)
Q Consensus 305 --~n~ry~aL~~l-------~-~--------------~~L~d~d--~sI~~~aL~lL~~l~~------e~nv~~Il~eL~ 352 (869)
+.+|-.++..+ . . .++++.. ..++..++.++-.++. ..-+..++..|.
T Consensus 576 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~ 655 (876)
T 1qgr_A 576 QFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG 655 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11221111111 1 0 3344443 3678778877765543 123566777777
Q ss_pred Hhhhhc-cHHHHHHHHHHHHHHHhhCCcc----HHHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHhCCch----HHHH
Q 002900 353 NFMSDI-ADEFKIVVVEAIRSLCLKFPLK----YRSLMNFLSNILREE-GGFEYKKAIVDSIVILIRDIPDA----KENG 422 (869)
Q Consensus 353 ~y~~~~-~~~~r~~~v~aI~~la~k~~~~----~~~~v~~ll~ll~~~-g~~~~~~~iv~~i~~ii~~~p~~----~~~~ 422 (869)
..+.+. +.+.|..++..++.++...... ...++..+++.+... .+..++..+...+..++...++- -..+
T Consensus 656 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~ 735 (876)
T 1qgr_A 656 IGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVV 735 (876)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 777766 7789999999999998765543 345566666666642 33467788888888887644322 2334
Q ss_pred HHHHHHhhhccC---c-------hhHHHHH-------HhhhcCCC-------CCC-CChHHHHHHHHhhccCC--CHHHH
Q 002900 423 LLHLCEFIEDCE---F-------TYLSTQI-------LHFLGTEG-------PKT-SDPSKYIRYIYNRVHLE--NATVR 475 (869)
Q Consensus 423 l~~L~~~l~~~~---~-------~~~~~~~-------l~ilGE~~-------~~~-~~~~~~l~~i~~~~~~e--~~~vr 475 (869)
+..|...+..-. . ..++..+ +-.+|... ... .....++..+......+ +..+|
T Consensus 736 ~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr 815 (876)
T 1qgr_A 736 LNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVV 815 (876)
T ss_dssp HHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHH
T ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455555443211 0 1233222 22344421 011 11233343333222233 67999
Q ss_pred HHHHHHHHHHhccccC--c-----hHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 002900 476 AAAVSTLAKFGAMVDA--L-----KPRVFVLLRRCLYDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 476 ~~~ltal~Kl~~~~~~--l-----~~~i~~ll~~~~~d~d~evrdRA~~yl~ll 522 (869)
..++.++.++....+. + ...+..+++.++.|.++++|+-|...+..+
T Consensus 816 ~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 816 ACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 9999999998876654 2 234566777688899999999999876654
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.93 E-value=1.1e-07 Score=101.10 Aligned_cols=251 Identities=13% Similarity=0.067 Sum_probs=173.7
Q ss_pred HHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCC-hhhHHHHHHHHH-HHh
Q 002900 73 FAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITD-GTLLTQIERYLK-QAI 150 (869)
Q Consensus 73 ~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~-~~~~~~l~~~i~-~~l 150 (869)
..+++.+.++|...|+-.--.+..+.. + -++..|.+-+.|+++.+|..|+.+|+.++. ++..+.+.+.+. .++
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~ 100 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRGG--Q---DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL 100 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--H---HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC--c---hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHh
Confidence 345567788888888887777766652 1 256778888899999999999999999984 455666777776 467
Q ss_pred cCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhH
Q 002900 151 VDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLA 230 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~ 230 (869)
.|.++.||..|+.++.++...+|......++.+..++.|.++.|...|+..|..+... .++..|+.-+. ..++..
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--~~~~~L~~~l~---d~~~~v 175 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK--ATIPLLINLLK---DPNGDV 175 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----CCHHHHHHHHT---CSSHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHc---CCCHHH
Confidence 8999999999999999998666655556777888889999999999998888766543 34555555444 345555
Q ss_pred HHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHH
Q 002900 231 QCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFA 310 (869)
Q Consensus 231 ~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~ 310 (869)
....++.+..+ . ......++.+...|++.++.|..+|+.++..+.+ . .++..|...+.+
T Consensus 176 r~~a~~aL~~~-~------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--~----~~~~~L~~~l~d-------- 234 (280)
T 1oyz_A 176 RNWAAFAININ-K------YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--K----RVLSVLCDELKK-------- 234 (280)
T ss_dssp HHHHHHHHHHH-T------CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--G----GGHHHHHHHHTS--------
T ss_pred HHHHHHHHHhh-c------cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--H----hhHHHHHHHhcC--------
Confidence 55555555543 1 1234667888888999999999999999988852 2 345555555543
Q ss_pred HHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 002900 311 AVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIR 371 (869)
Q Consensus 311 aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~ 371 (869)
++ +|..++..|-.++++.-+..+.+.+.. ..+.+++.+++.++.
T Consensus 235 ------------~~--vr~~a~~aL~~i~~~~~~~~L~~~l~~---~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 235 ------------NT--VYDDIIEAAGELGDKTLLPVLDTMLYK---FDDNEIITSAIDKLK 278 (280)
T ss_dssp ------------SS--CCHHHHHHHHHHCCGGGHHHHHHHHTT---SSCCHHHHHHHHHHT
T ss_pred ------------cc--HHHHHHHHHHhcCchhhhHHHHHHHhc---CCCcHHHHHHHHHhh
Confidence 22 556666666667776544444433322 235567777776654
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.92 E-value=1.6e-07 Score=113.23 Aligned_cols=171 Identities=11% Similarity=0.114 Sum_probs=119.3
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcCCC-CCccc--hhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcc---hhH-hh
Q 002900 35 VFNDPQLDPRRCSQVITKLLYLLNQGET-FTKIE--ATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSAD---EVI-IV 107 (869)
Q Consensus 35 ~f~~~~~~~~k~~~~l~kli~l~~~G~~-~~~~e--~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d---~~~-Lv 107 (869)
+|.+...+.+ .+. ...+..+..|.. .+... ...+...++++++|++...++-.+-++...+..++ .++ .-
T Consensus 255 ~~~~~~~~~~-~~a--~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~g 331 (810)
T 3now_A 255 KLLAPDMESK-VRV--TVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG 331 (810)
T ss_dssp HHSSCCHHHH-HHH--HHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHH
T ss_pred HhccCChHhH-HHH--HHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 4444444433 232 444555666741 11111 11344677889999999999999988877665422 111 22
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccCCC--------hhh----HHHHHHHHHHHhcCC--ChHHHHHHHHHHhhhcccCh
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRITD--------GTL----LTQIERYLKQAIVDK--NPVVASAALVSGIHLLQTTP 173 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I~~--------~~~----~~~l~~~i~~~l~d~--~p~VRk~A~lal~~L~~~~p 173 (869)
+..|.+=+.+.++.+|-.|+-+||++.. +.+ ++.+.+.+.+.|.+. ++-||+.|+-++..|....+
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~ 411 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE 411 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH
Confidence 3666667788999999999999999752 112 567888899999887 89999999999999875332
Q ss_pred ---HHHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 174 ---EIVK--RWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 174 ---e~v~--~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
+++. .+++.+.+++.+.++.+++.|+..|..|...
T Consensus 412 vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 412 CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 1232 5778888999888999999999999999863
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.91 E-value=1.1e-06 Score=102.29 Aligned_cols=352 Identities=11% Similarity=0.063 Sum_probs=220.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhcccCh----H-HHH-HHHHHHHHHhcCCC-hhHHHHHHHHHHHHhhcChhH---
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTP----E-IVK-RWSNEVQEAVQSRA-ALVQFHALALLHQIRQNDRLA--- 212 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p----e-~v~-~~~~~l~~~l~d~~-~~v~~~al~ll~~i~~~d~~~--- 212 (869)
++.+.+.+.+.++.+|..|+.++.++....+ + ++. ..++.+.+++.+.+ +.++..|+..|..+...++..
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4555666788899999999999999865432 1 222 46778888888776 899999999999998754332
Q ss_pred ------HHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCch-----hhHHHHHHHH-hcCChHHHHHHHHHHHh
Q 002900 213 ------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDR-----PFYDFLESCL-RHKAEMVIFEAARAITE 280 (869)
Q Consensus 213 ------~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~-----~l~~~l~~~L-~~~~~aV~~ea~~~i~~ 280 (869)
+..|+.-+. ..++-.+...+..+..+... +|..+. ..++.|..+| .+.+..+...|+.++..
T Consensus 156 ~~~~g~i~~L~~lL~---~~~~~v~~~a~~aL~~l~~~---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLG---SSSDDVREQAVWALGNVAGD---SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHT---CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCC---ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 223333332 13343344444444443222 222222 2345556666 55677888888888877
Q ss_pred ccCC----ChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChh--hHH-----HHHH
Q 002900 281 LNGV----TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNES--SVD-----RLMK 349 (869)
Q Consensus 281 l~~~----~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~--nv~-----~Il~ 349 (869)
+... .......++..|..+|.++++.++. .++..|..++... .+. .++.
T Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~--------------------~a~~aL~~l~~~~~~~~~~~~~~g~v~ 289 (528)
T 4b8j_A 230 FCRGKPQPSFEQTRPALPALARLIHSNDEEVLT--------------------DACWALSYLSDGTNDKIQAVIEAGVCP 289 (528)
T ss_dssp HHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHH--------------------HHHHHHHHHTSSCHHHHHHHHHTTCHH
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHH--------------------HHHHHHHHHHcCCHHHHHHHHHcCHHH
Confidence 6422 1122334555555555555544444 4444444443221 112 2455
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHhhCCccHH-----HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH----
Q 002900 350 QITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR-----SLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE---- 420 (869)
Q Consensus 350 eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~-----~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~---- 420 (869)
.|...+.+.+...+..++.+|+.++...+.... -.+..|.++|.......++..++..+..+....++...
T Consensus 290 ~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~ 369 (528)
T 4b8j_A 290 RLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN 369 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666677777889999999999999975443332 24788999998652455777777789999876665443
Q ss_pred -HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChH--------HHHHHHHhhccCCCHHHHHHHHHHHHHHhccccC
Q 002900 421 -NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPS--------KYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDA 491 (869)
Q Consensus 421 -~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~--------~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~ 491 (869)
.++..|++.+.+ ..+.++..++|.||..+... ++. ..+..+..-+...++.++..++.++..+....+.
T Consensus 370 ~~~i~~L~~lL~~-~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 370 AGIIGPLVNLLQT-AEFDIKKEAAWAISNATSGG-SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp TTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456788888876 36788888899988765431 111 1234445545567889999999998888654321
Q ss_pred -----------chHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 002900 492 -----------LKPR-----VFVLLRRCLYDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 492 -----------l~~~-----i~~ll~~~~~d~d~evrdRA~~yl~ll 522 (869)
.... ....+.....+.+.+|+++|...+.-+
T Consensus 448 ~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 448 DKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred hhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1111 234456677888999999998765433
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.87 E-value=2.3e-06 Score=102.39 Aligned_cols=379 Identities=11% Similarity=0.087 Sum_probs=238.5
Q ss_pred hhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH-----HHHHHHHHHHhcCC-ChhHHHHHHHHHHHHhhcCh
Q 002900 137 TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV-----KRWSNEVQEAVQSR-AALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 137 ~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v-----~~~~~~l~~~l~d~-~~~v~~~al~ll~~i~~~d~ 210 (869)
.+....++.+.+.|.+.++.||.+|+.++.++....+... ...++.+.+.|.+. ++.++.+|+..|..+...+.
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 3334456677778889999999999999999987654321 14566667777654 78899999998888775421
Q ss_pred --h------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCc-----hhhHHHHHHHHhcCChHHHHHHHHH
Q 002900 211 --L------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-----RPFYDFLESCLRHKAEMVIFEAARA 277 (869)
Q Consensus 211 --~------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~-----~~l~~~l~~~L~~~~~aV~~ea~~~ 277 (869)
. .+..|+.-+. ...+-.+...++.+..+... ++... ...++.+..+|++.+.-+...++.+
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nL~~~---~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLH---QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHH---STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHhC---cchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 1 1223333333 23455555555555544322 22222 2456778888888887777767777
Q ss_pred HHhccCCChHh-----HhhHHHHHHHHHcCCCc-hhHHHHHHHhcc---------------------ccCCCCCHHHHHH
Q 002900 278 ITELNGVTNRE-----LTPAITVLQLFLSSSKP-VLRFAAVRTLNK---------------------SLISDQNRSIATL 330 (869)
Q Consensus 278 i~~l~~~~~~~-----~~~a~~~L~~~L~s~~~-n~ry~aL~~l~~---------------------~~L~d~d~sI~~~ 330 (869)
+..+....... -..++..|..++.+.+. .++..++..+.. .++.+++..+++.
T Consensus 164 L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 243 (644)
T 2z6h_A 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 76664222221 12456667677766543 344444333211 6678888999999
Q ss_pred HHHHhhccCChh----hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHH-----HHHHHHHHHhhcCC-cch
Q 002900 331 AITTLLKTGNES----SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGG-FEY 400 (869)
Q Consensus 331 aL~lL~~l~~e~----nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~-----~v~~ll~ll~~~g~-~~~ 400 (869)
++.+|..++... .+..++..|...+.+.+.+.+..++.+++.|+...+..... .+..|++++...++ ..+
T Consensus 244 a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v 323 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323 (644)
T ss_dssp HHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHH
Confidence 999998887532 34467777777777788899999999999999864443332 46778888876543 356
Q ss_pred HHHHHHHHHHHHHhCCc---hHH-----HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCCh---------HHHHHHH
Q 002900 401 KKAIVDSIVILIRDIPD---AKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP---------SKYIRYI 463 (869)
Q Consensus 401 ~~~iv~~i~~ii~~~p~---~~~-----~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~---------~~~l~~i 463 (869)
...+...+..+....|+ .+. .++..|.+.+.+.....++..++|.++..+....+- +.+++.+
T Consensus 324 ~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHH
Confidence 67777788888765563 222 467888888887555678888899998876432221 1122222
Q ss_pred Hhh----------------cc--CCCHHHHHHHHHHHHHHhccccCchH-----HHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002900 464 YNR----------------VH--LENATVRAAAVSTLAKFGAMVDALKP-----RVFVLLRRCLYDGDDEVRDRATLYLN 520 (869)
Q Consensus 464 ~~~----------------~~--~e~~~vr~~~ltal~Kl~~~~~~l~~-----~i~~ll~~~~~d~d~evrdRA~~yl~ 520 (869)
... +. ..+..++..++.++..++.. ++.+. .+...|-..+.+.+.++|..|...+.
T Consensus 404 ~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 482 (644)
T 2z6h_A 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 482 (644)
T ss_dssp HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 211 10 12467777888888877542 22211 12445555667888999999986544
Q ss_pred Hh
Q 002900 521 TV 522 (869)
Q Consensus 521 ll 522 (869)
-+
T Consensus 483 ~l 484 (644)
T 2z6h_A 483 EL 484 (644)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.87 E-value=1.8e-06 Score=104.10 Aligned_cols=371 Identities=12% Similarity=0.102 Sum_probs=202.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHH----HHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc---Ch----
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIV----KRWSNEVQEAVQSRAALVQFHALALLHQIRQN---DR---- 210 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v----~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~---d~---- 210 (869)
..+.+..++.+.++.++..|+.++.+...+ ++.- +.-++.+..++.+.++.+...|+..|+.+... |+
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 444455555667777777777777765432 3321 12235566666666666666666666666421 11
Q ss_pred ---hHHHHHHHhh----cc---CCCCChhHHHHHHHHHHHhhhhhcCCCCCc------hhhHHHHHHHHhcCChHHHHHH
Q 002900 211 ---LAVSKLVTSL----TR---GTVRSPLAQCLLIRYTTQVIREAATTQTGD------RPFYDFLESCLRHKAEMVIFEA 274 (869)
Q Consensus 211 ---~~~~~li~~l----~~---~~~~~~~~~v~llr~l~~~~~~~~~dp~~~------~~l~~~l~~~L~~~~~aV~~ea 274 (869)
.++..+++.+ .. +..--.|+ +..|.+++. +|..+ ...++.|..+|++.+..+.|.|
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~A-veaLayLS~-------~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~a 441 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWA-ADGLAYLTL-------DAECKEKLIEDKASIHALMDLARGGNQSCLYGV 441 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHH-HHHHHHHTT-------SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHHhC-------CcHHHHHHHHccchHHHHHHHhCCCChHHHHHH
Confidence 1233333322 11 10111222 233333321 22222 2345567778888888999999
Q ss_pred HHHHHhccCCCh-HhHhhHHHHHHHHHcCC----------Cchh---HHH----HHHHhccccCCCCCHHHHHHHHHHhh
Q 002900 275 ARAITELNGVTN-RELTPAITVLQLFLSSS----------KPVL---RFA----AVRTLNKSLISDQNRSIATLAITTLL 336 (869)
Q Consensus 275 ~~~i~~l~~~~~-~~~~~a~~~L~~~L~s~----------~~n~---ry~----aL~~l~~~~L~d~d~sI~~~aL~lL~ 336 (869)
+.++.++...+. +...+.+..+..+...+ +.+- +.+ ++..|. .++++++..++..|..+|.
T Consensus 442 l~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV-~LL~s~s~~vqe~Aa~aL~ 520 (810)
T 3now_A 442 VTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC-ALAKTESHNSQELIARVLN 520 (810)
T ss_dssp HHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 999998864221 00000000001110000 0000 000 011110 4456667778888888877
Q ss_pred ccC-ChhhHHHHHH-----HHHHhhhhccHHHHHHHHHHHHHHHhhCCccH-------HHHHHHHHHHHhhcCCcchHHH
Q 002900 337 KTG-NESSVDRLMK-----QITNFMSDIADEFKIVVVEAIRSLCLKFPLKY-------RSLMNFLSNILREEGGFEYKKA 403 (869)
Q Consensus 337 ~l~-~e~nv~~Il~-----eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~-------~~~v~~ll~ll~~~g~~~~~~~ 403 (869)
.++ ++++...+++ -|...+.+.+...|+.++.+|+.++....+.. ...+..|.++|........+.+
T Consensus 521 NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~e 600 (810)
T 3now_A 521 AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFE 600 (810)
T ss_dssp HHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHH
Confidence 775 4445544433 35555666677889999999999987432211 2356778888874333222234
Q ss_pred HHHHHHHHHHhCCchHH-----HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChH------HHHHHHHhhccCCCH
Q 002900 404 IVDSIVILIRDIPDAKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPS------KYIRYIYNRVHLENA 472 (869)
Q Consensus 404 iv~~i~~ii~~~p~~~~-----~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~------~~l~~i~~~~~~e~~ 472 (869)
+..++..+....++.+. .++..|.+++.+ ..+.++..++|++|......+.-. ..+..+..-+..++.
T Consensus 601 Al~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~ 679 (810)
T 3now_A 601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE 679 (810)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCH
Confidence 45578877765555543 356677777765 456788888999888654211100 122333333334678
Q ss_pred HHHHHHHHHHHHHhccccCch------HHHHHHHHHhhcCCCHHHHHHHHHHH-HHhC
Q 002900 473 TVRAAAVSTLAKFGAMVDALK------PRVFVLLRRCLYDGDDEVRDRATLYL-NTVG 523 (869)
Q Consensus 473 ~vr~~~ltal~Kl~~~~~~l~------~~i~~ll~~~~~d~d~evrdRA~~yl-~ll~ 523 (869)
.+|..+..|++-+....++.. ......|-..+.+.|.++|.+|...+ ++..
T Consensus 680 ~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 680 ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 899988888888877433211 12334555667789999999999865 4443
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.84 E-value=1.5e-06 Score=101.36 Aligned_cols=268 Identities=13% Similarity=0.097 Sum_probs=172.9
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccC----CCh---hhHHH-HHHHHHHHhc-CCChHHHHHHHHHHhhhcccChHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRI----TDG---TLLTQ-IERYLKQAIV-DKNPVVASAALVSGIHLLQTTPEIVK 177 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I----~~~---~~~~~-l~~~i~~~l~-d~~p~VRk~A~lal~~L~~~~pe~v~ 177 (869)
.+..+.+.+.|.|+..+-.|++.+.++ ..| .+++. +++.+.++|. +.+|.++..|+-|+..+...+++..+
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456667777778877776666655432 222 22222 5677777775 46689999999999999877766433
Q ss_pred -----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhH---------HHHHHHhhccCC--CCChhHHHHHHHHHHHh
Q 002900 178 -----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLA---------VSKLVTSLTRGT--VRSPLAQCLLIRYTTQV 241 (869)
Q Consensus 178 -----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~---------~~~li~~l~~~~--~~~~~~~v~llr~l~~~ 241 (869)
..++.+..++.+.++.+..+|+.+|..|..+++.. +..|+.-+.... .......-.....+..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 36778888999999999999999999888654321 223333332110 01111111122222222
Q ss_pred hhhhcCCCCC----chhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHH
Q 002900 242 IREAATTQTG----DRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAV 312 (869)
Q Consensus 242 ~~~~~~dp~~----~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL 312 (869)
... .+|.. ...+++.|..+|++.++.|...|+.++.++...+.... ..++..|..+|.++++.++..++
T Consensus 237 ~~~--~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 237 CRN--KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HCC--CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred Hhc--ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 111 12222 14567788889999999999999999998865443322 23556778888888888887777
Q ss_pred HHhcc----------------------ccCCCCCHHHHHHHHHHhhccC--ChhhHHH-----HHHHHHHhhhhccHHHH
Q 002900 313 RTLNK----------------------SLISDQNRSIATLAITTLLKTG--NESSVDR-----LMKQITNFMSDIADEFK 363 (869)
Q Consensus 313 ~~l~~----------------------~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~-----Il~eL~~y~~~~~~~~r 363 (869)
+++.. .++++++..|+..|.-+|..++ ++..... ++.-|...+.+.+.+.+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 76643 5667888888888888887764 4544443 34445566667778888
Q ss_pred HHHHHHHHHHHhh
Q 002900 364 IVVVEAIRSLCLK 376 (869)
Q Consensus 364 ~~~v~aI~~la~k 376 (869)
.+++.+|+.++..
T Consensus 395 ~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 395 KAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 8888888888864
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.81 E-value=2.4e-06 Score=99.09 Aligned_cols=383 Identities=11% Similarity=0.084 Sum_probs=233.1
Q ss_pred CChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHH---H--HHHHHHHHHHhcC-CChhHHHHHHHHHHHHhh
Q 002900 134 TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---V--KRWSNEVQEAVQS-RAALVQFHALALLHQIRQ 207 (869)
Q Consensus 134 ~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~---v--~~~~~~l~~~l~d-~~~~v~~~al~ll~~i~~ 207 (869)
+++++....++.+.+.+.+.++.||..|+.++.++....+.. + ...++.+.+++.+ .++.++.+|...|..+..
T Consensus 10 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp -------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 344555567788888889999999999999999998644321 1 1456666666654 478899999999988875
Q ss_pred cCh--h------HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCc-----hhhHHHHHHHHhcCChHHHHHH
Q 002900 208 NDR--L------AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD-----RPFYDFLESCLRHKAEMVIFEA 274 (869)
Q Consensus 208 ~d~--~------~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~-----~~l~~~l~~~L~~~~~aV~~ea 274 (869)
.+. . .+..++.-+. ...+-.+...++.+..+... ++... ...++.+..+|++.+..+...+
T Consensus 90 ~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 90 HREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLH---QEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC---CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 421 1 1223333333 23354555555555544322 23222 2356777888888887787777
Q ss_pred HHHHHhccCCChHh-----HhhHHHHHHHHHcCCCch-hHHHHHHHhc---c------------------ccCCCCCHHH
Q 002900 275 ARAITELNGVTNRE-----LTPAITVLQLFLSSSKPV-LRFAAVRTLN---K------------------SLISDQNRSI 327 (869)
Q Consensus 275 ~~~i~~l~~~~~~~-----~~~a~~~L~~~L~s~~~n-~ry~aL~~l~---~------------------~~L~d~d~sI 327 (869)
+.++..+....... ...++..|..++.++++. .++.+...+. . .++.+++..+
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 77776664222211 123455565666555443 3443333211 1 6778888999
Q ss_pred HHHHHHHhhccCChh----hHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHH-----HHHHHHHHHhhcCC-
Q 002900 328 ATLAITTLLKTGNES----SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS-----LMNFLSNILREEGG- 397 (869)
Q Consensus 328 ~~~aL~lL~~l~~e~----nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~-----~v~~ll~ll~~~g~- 397 (869)
++.++.+|..++... .+..++..|...+.+.+.+.+..++.+++.++...+..... .+..|++++...++
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCH
Confidence 999999988886432 34567778888888888999999999999998754433332 35678888876432
Q ss_pred cchHHHHHHHHHHHHHhCCch---HH-----HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHH-----HHHHHH
Q 002900 398 FEYKKAIVDSIVILIRDIPDA---KE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSK-----YIRYIY 464 (869)
Q Consensus 398 ~~~~~~iv~~i~~ii~~~p~~---~~-----~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~-----~l~~i~ 464 (869)
..+...++..+..+....|+. +. .++..|.+.+.+.....++..++|.++..+....+-.. .+..+.
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~ 403 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 403 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHH
Confidence 356667777888887666653 22 35677888887755567888889999987653222111 111222
Q ss_pred hhccCC----------------------CHHHHHHHHHHHHHHhccccCchH-----HHHHHHHHhhcCCCHHHHHHHHH
Q 002900 465 NRVHLE----------------------NATVRAAAVSTLAKFGAMVDALKP-----RVFVLLRRCLYDGDDEVRDRATL 517 (869)
Q Consensus 465 ~~~~~e----------------------~~~vr~~~ltal~Kl~~~~~~l~~-----~i~~ll~~~~~d~d~evrdRA~~ 517 (869)
+.+... +..++..++.++..+... ++.+. .+...|-..+.|.+.++|..|..
T Consensus 404 ~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~-~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~ 482 (529)
T 1jdh_A 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482 (529)
T ss_dssp HHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-chHHHHHhccCCccHHHHHHcCCchHHHHHHHH
Confidence 111111 233444566677766542 22221 12355666778889999999987
Q ss_pred HHHHhC
Q 002900 518 YLNTVG 523 (869)
Q Consensus 518 yl~ll~ 523 (869)
.+.-+.
T Consensus 483 ~l~~l~ 488 (529)
T 1jdh_A 483 VLCELA 488 (529)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655544
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.81 E-value=2.2e-07 Score=94.34 Aligned_cols=180 Identities=19% Similarity=0.168 Sum_probs=127.1
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~ 186 (869)
++..|.+.|.|+|+.+|..|++.|+.++.++.++.+. +.+.|.++.||..|+.++.++. .++.+ +.+.++
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~----~~l~~~~~~vr~~a~~aL~~~~--~~~~~----~~L~~~ 89 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI----KALKDEDAWVRRAAADALGQIG--DERAV----EPLIKA 89 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH----HHTTCSCHHHHHHHHHHHHHHC--CGGGH----HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHH----HHHcCCCHHHHHHHHHHHHhhC--CHHHH----HHHHHH
Confidence 3566777788899999999999999998876665544 4558889999999999988875 34443 444566
Q ss_pred hcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcC
Q 002900 187 VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK 266 (869)
Q Consensus 187 l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~ 266 (869)
+.|.++.|...|+..|..+... .++..|+.-+. ..++......++.+..+ . + ...++.|..+|++.
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~--~~~~~L~~~l~---d~~~~vr~~a~~aL~~~--~---~----~~~~~~L~~~l~d~ 155 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDE--RAVEPLIKALK---DEDWFVRIAAAFALGEI--G---D----ERAVEPLIKALKDE 155 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTT---CSSHHHHHHHHHHHHHH--C---C----GGGHHHHHHHTTCS
T ss_pred HcCCCHHHHHHHHHHHHHhCcH--HHHHHHHHHHh---CCCHHHHHHHHHHHHHc--C---C----HHHHHHHHHHHcCC
Confidence 7888888988888888777543 45555555443 35666666677776653 1 2 23567777788888
Q ss_pred ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhc
Q 002900 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (869)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~ 316 (869)
++.|...|+.++..+.. . .++..|..++.++++.+|..|+..|.
T Consensus 156 ~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp SHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88899999998888842 2 45566666666666666666666653
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.79 E-value=2.6e-07 Score=93.00 Aligned_cols=181 Identities=19% Similarity=0.163 Sum_probs=127.5
Q ss_pred hhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHH
Q 002900 106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQE 185 (869)
Q Consensus 106 Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~ 185 (869)
-....+.+.|.|+|+.+|..|++.|+.++.++.++.+ .+.+.|.++.||..|+.++.++. .++.+ +.+.+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L----~~~l~~~~~~vr~~a~~~L~~~~--~~~~~----~~L~~ 83 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL----IKALKDEDAWVRRAAADALGQIG--DERAV----EPLIK 83 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHH----HHHTTCSSHHHHHHHHHHHHHHC--CGGGH----HHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHH----HHHHcCCCHHHHHHHHHHHHhhC--CHHHH----HHHHH
Confidence 3456677788888888888888888888887665544 44557888888888888888775 44433 44455
Q ss_pred HhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhc
Q 002900 186 AVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH 265 (869)
Q Consensus 186 ~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~ 265 (869)
++.|.++.|...|+..|..+... ..+..++.-+. ..++......++.+..+ . + ...++.|..++++
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~~~--~~~~~L~~~l~---d~~~~vr~~a~~aL~~~--~---~----~~~~~~L~~~l~d 149 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIGDE--RAVEPLIKALK---DEDWFVRIAAAFALGEI--G---D----ERAVEPLIKALKD 149 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTT---CSSHHHHHHHHHHHHHH--T---C----GGGHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHHHHhCcH--HHHHHHHHHHc---CCCHHHHHHHHHHHHHh--C---C----HHHHHHHHHHHcC
Confidence 67788888888888888776543 45555555443 35566666666666653 1 2 2456777788888
Q ss_pred CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhc
Q 002900 266 KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (869)
Q Consensus 266 ~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~ 316 (869)
.++.|..+|+.++..+.. . .++..|..++.++++.+|..+..+|.
T Consensus 150 ~~~~vr~~A~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 888899999999988842 2 46667777777777778877777664
No 43
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.72 E-value=5e-06 Score=94.23 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=57.8
Q ss_pred hHHHhhcCCCCHHHHhHHHHHhccCCC---hhhHHHHHHHHHHHhcC--CChHHHHHHHHHHhhhcccC-----------
Q 002900 109 SSLMKDMTSKTDMYRANAIRVLCRITD---GTLLTQIERYLKQAIVD--KNPVVASAALVSGIHLLQTT----------- 172 (869)
Q Consensus 109 nsl~kDl~s~n~~vr~lALr~L~~I~~---~~~~~~l~~~i~~~l~d--~~p~VRk~A~lal~~L~~~~----------- 172 (869)
..+...+.++|+.+|-.|-..|..+.. ++....+.. .+.+ .++.||..|+..+-++...+
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~----il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSR----VLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHH----HHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345566889999999999999988664 444444443 3444 37899999999998876432
Q ss_pred -----hHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 002900 173 -----PEIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 173 -----pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~ 206 (869)
++....+.+.+.+.+.+.++.+ ..+..++..|.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia 117 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIA 117 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHH
Confidence 2222233344555555555555 44444444444
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.59 E-value=1.6e-06 Score=98.39 Aligned_cols=357 Identities=13% Similarity=0.070 Sum_probs=200.4
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCCC-cchhHh-hhhHHHhhcCCCCHHHHhHHHHHhccCC------------------
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSPS-ADEVII-VTSSLMKDMTSKTDMYRANAIRVLCRIT------------------ 134 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~L-vinsl~kDl~s~n~~vr~lALr~L~~I~------------------ 134 (869)
++..+.|+|...|+.+--++.++... ...... ...-+. + .+.++.+|-.|.-.|.+..
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~-~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-N-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH-c-CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 33445678888888888888775532 222222 222222 2 3457888888876666542
Q ss_pred ChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhccc-ChH-HHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHhhcC-
Q 002900 135 DGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQT-TPE-IVKRWSNEVQEAVQSR--AALVQFHALALLHQIRQND- 209 (869)
Q Consensus 135 ~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~-~pe-~v~~~~~~l~~~l~d~--~~~v~~~al~ll~~i~~~d- 209 (869)
+++..+.+...+.+.+.+.++.| ++++.++..+... .|+ .-..+++.+.+.+.+. ++.+...|+..|..+...-
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 34455667777788889999999 9999988877643 232 1223445555666676 7888888888887776531
Q ss_pred hhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcC--ChHHHHHHHHHHHhccCCChH
Q 002900 210 RLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHK--AEMVIFEAARAITELNGVTNR 287 (869)
Q Consensus 210 ~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~--~~aV~~ea~~~i~~l~~~~~~ 287 (869)
+. ...+. ...+++.+..+|++. +..|..+|++++..+-..-..
T Consensus 163 ~~-------------~~~~~----------------------~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 163 PE-------------QLQDK----------------------SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp GG-------------GTGGG----------------------HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred ch-------------hhHhH----------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 10 00010 112333444455554 556667777776553211010
Q ss_pred hH------hhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCCh------hhHH-HHHHHHHHh
Q 002900 288 EL------TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE------SSVD-RLMKQITNF 354 (869)
Q Consensus 288 ~~------~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e------~nv~-~Il~eL~~y 354 (869)
.. ...+..+... +.++|..+|..++.+|..++.. ..+. .++.-+...
T Consensus 208 ~~~~~~~~~~l~~~l~~~--------------------~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEA--------------------TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp HHTSHHHHHHHHHHHHHH--------------------TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHh--------------------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0012222222 2333444444444443333211 1122 333333333
Q ss_pred hhhccHHHHHHHHHHHHHHHhhC-------------------Cc------cHHHHHHHHHHHHhhc------CCcchHHH
Q 002900 355 MSDIADEFKIVVVEAIRSLCLKF-------------------PL------KYRSLMNFLSNILREE------GGFEYKKA 403 (869)
Q Consensus 355 ~~~~~~~~r~~~v~aI~~la~k~-------------------~~------~~~~~v~~ll~ll~~~------g~~~~~~~ 403 (869)
+.+.++++|..++..+..++..- +. ....++..+++.+... .++.+...
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 34455566666666666655431 00 1256666777666531 23456667
Q ss_pred HHHHHHHHHHhCCc-hHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCC------ChHHHHHHHHhhccCCCHHHHH
Q 002900 404 IVDSIVILIRDIPD-AKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTS------DPSKYIRYIYNRVHLENATVRA 476 (869)
Q Consensus 404 iv~~i~~ii~~~p~-~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~------~~~~~l~~i~~~~~~e~~~vr~ 476 (869)
+...+..+....++ ....++..+.+.+.+ .....+.++++.+|..+.... ....++..+.+.+...++.||.
T Consensus 348 a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~ 426 (462)
T 1ibr_B 348 AGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426 (462)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 77777777776653 345667777777766 456666667777776654221 2356777788777778899999
Q ss_pred HHHHHHHHHhcccc
Q 002900 477 AAVSTLAKFGAMVD 490 (869)
Q Consensus 477 ~~ltal~Kl~~~~~ 490 (869)
.+..++.+++...+
T Consensus 427 ~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 427 TAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcc
Confidence 99999888887653
No 45
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.56 E-value=1.9e-05 Score=81.55 Aligned_cols=219 Identities=17% Similarity=0.157 Sum_probs=151.5
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccCCC--hhhHH-----HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH---
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRITD--GTLLT-----QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK--- 177 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I~~--~~~~~-----~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~--- 177 (869)
+..|.+-|.++++.+|-.|+++|+++.. ++... ..++.+.+.+.+.++.||..|+.++..+...+++...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4567778889999999999999998743 22222 2577888889999999999999999999877666443
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhh
Q 002900 178 --RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPF 255 (869)
Q Consensus 178 --~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l 255 (869)
..++.+..++.+.++.++.+|+.+|..+...++.....++. ...
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------------------------~~~ 129 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD----------------------------------AGG 129 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH----------------------------------TTH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------------CCC
Confidence 36778888888888999999998888887543211111110 012
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHH
Q 002900 256 YDFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATL 330 (869)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~ 330 (869)
++.+..+|++.++.+...|+.++..+...+.... ..++..|..++ .+++..++..
T Consensus 130 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--------------------~~~~~~v~~~ 189 (252)
T 4hxt_A 130 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL--------------------TSTDSEVQKE 189 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT--------------------TCSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHH--------------------CCCCHHHHHH
Confidence 4566677778888899999999998854333221 12334444444 4445556666
Q ss_pred HHHHhhccC--ChhhHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc
Q 002900 331 AITTLLKTG--NESSVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK 380 (869)
Q Consensus 331 aL~lL~~l~--~e~nv~~-----Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~ 380 (869)
++.+|..++ ++.+... ++..|...+.+.+.+.+..++.+++.++...+..
T Consensus 190 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 190 AARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 666666554 3333333 4567777788888899999999999999865543
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.56 E-value=1e-05 Score=93.86 Aligned_cols=348 Identities=9% Similarity=0.055 Sum_probs=189.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhcc--cCh---HHHH-HHHHHHHHHhc-CCChhHHHHHHHHHHHHhhcChhH---
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQ--TTP---EIVK-RWSNEVQEAVQ-SRAALVQFHALALLHQIRQNDRLA--- 212 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~--~~p---e~v~-~~~~~l~~~l~-d~~~~v~~~al~ll~~i~~~d~~~--- 212 (869)
++.+.+.+.+.++-++..|+.++.|+.. .+| ++++ ..++.+.++|. +.++.++..|..+|..|...++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3455667799999999999999998864 355 3444 47888888886 445889999999999997655432
Q ss_pred ------HHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchh-----hHHHHHHHHhcCC-----hHHHHHHHH
Q 002900 213 ------VSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRP-----FYDFLESCLRHKA-----EMVIFEAAR 276 (869)
Q Consensus 213 ------~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~-----l~~~l~~~L~~~~-----~aV~~ea~~ 276 (869)
+..|+.-+. .+++-.+-..+..+..+..+ +|..+.. .++.+..+|++.+ ..++..++.
T Consensus 139 vv~~GaIp~Lv~lL~---s~~~~v~e~A~~aL~nLa~d---~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 139 VVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAGD---GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 223333332 23444444445555443222 2322222 2445556665432 234445555
Q ss_pred HHHhccCC-----ChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCCh--hhHHH---
Q 002900 277 AITELNGV-----TNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE--SSVDR--- 346 (869)
Q Consensus 277 ~i~~l~~~-----~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e--~nv~~--- 346 (869)
++..+... .......++..|..++.++++.++..++.++ ..++.. .+...
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL--------------------~~L~~~~~~~~~~i~~ 272 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI--------------------SYLTDGPNERIEMVVK 272 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH--------------------HHHTSSCHHHHHHHHT
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HHHhhchhhhHHHHHh
Confidence 55443210 1122234555566666665555555444444 333221 11111
Q ss_pred --HHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHH-----HHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchH
Q 002900 347 --LMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLM-----NFLSNILREEGGFEYKKAIVDSIVILIRDIPDAK 419 (869)
Q Consensus 347 --Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v-----~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~ 419 (869)
++..|..++...+...+..++.+++.++...+.....++ ..|..+|+.. ...++..+.-.+..|....++.+
T Consensus 273 ~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~ 351 (510)
T 3ul1_B 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQI 351 (510)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHH
Confidence 233445555556667777777777777654333333322 2244455433 23344544556777666555443
Q ss_pred HH-----HHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHH--------HHHHHHhhccCCCHHHHHHHHHHHHHHh
Q 002900 420 EN-----GLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSK--------YIRYIYNRVHLENATVRAAAVSTLAKFG 486 (869)
Q Consensus 420 ~~-----~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~--------~l~~i~~~~~~e~~~vr~~~ltal~Kl~ 486 (869)
.. ++..|++.+.+ ...+++..++|.|+...... ++.. .+..+.+-+...++.++..++.++.++.
T Consensus 352 ~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~-~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 352 QQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 32 45566666655 34566667777776643211 1111 1233344344457778888888877765
Q ss_pred cccc---C---chHH-----HHHHHHHhhcCCCHHHHHHHHHHH
Q 002900 487 AMVD---A---LKPR-----VFVLLRRCLYDGDDEVRDRATLYL 519 (869)
Q Consensus 487 ~~~~---~---l~~~-----i~~ll~~~~~d~d~evrdRA~~yl 519 (869)
...+ + .... ....++...++.+.+|+++|...+
T Consensus 430 ~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 430 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4322 1 1111 234566677888999999988654
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.55 E-value=4.4e-06 Score=83.81 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=143.0
Q ss_pred hhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHH
Q 002900 69 TEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQ 148 (869)
Q Consensus 69 s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~ 148 (869)
...+..+++++.++|...|+..--++..+... -++..|.+-+.|+|+.+|..|+++|+.++.++.++.+. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~----~ 83 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLI----K 83 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH----H
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHH----H
Confidence 35566778899999999999988888776542 24566777788999999999999999999987766554 4
Q ss_pred HhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCCh
Q 002900 149 AIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSP 228 (869)
Q Consensus 149 ~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~ 228 (869)
.+.|.+|.||..|+.++.++. .++.+ +.+.+++.|.++.|...|+..|..+... .++..|+.-+. ..++
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~--~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~L~~~l~---d~~~ 152 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIG--DERAV----EPLIKALKDEDWFVRIAAAFALGEIGDE--RAVEPLIKALK---DEDG 152 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC--CGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHTCG--GGHHHHHHHTT---CSSH
T ss_pred HHcCCCHHHHHHHHHHHHHhC--cHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhCCH--HHHHHHHHHHc---CCCH
Confidence 668999999999999999986 44443 4455677889999999999999888643 55555555444 3567
Q ss_pred hHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 002900 229 LAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN 282 (869)
Q Consensus 229 ~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~ 282 (869)
+.....++.+..+ . ....++.|..++++.++.|...|+.++-.+.
T Consensus 153 ~vr~~A~~aL~~~--~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 153 WVRQSAADALGEI--G-------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHH--C-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh--C-------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7777777777654 1 2356778888888899999999999987774
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.54 E-value=4.5e-06 Score=84.44 Aligned_cols=184 Identities=15% Similarity=0.106 Sum_probs=141.0
Q ss_pred hhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHh
Q 002900 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI 150 (869)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l 150 (869)
....+++++.+++...|+..--.+..+... -++..|.+-+.|+++.+|..|+++|+.+++++.++.+. +.+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~----~~l 90 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLI----KAL 90 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH----HHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHH----HHH
Confidence 445567788899999998888888776541 24566777788999999999999999999987766554 556
Q ss_pred cCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhH
Q 002900 151 VDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLA 230 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~ 230 (869)
.|.+|.||..|+.++.++. .++. ++.+.+++.|.++.|...|+..|..+... .++..|+.-+. ..+++.
T Consensus 91 ~~~~~~vr~~a~~aL~~~~--~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~L~~~l~---d~~~~v 159 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIG--DERA----VEPLIKALKDEDWFVRIAAAFALGEIGDE--RAVEPLIKALK---DEDGWV 159 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTT---CSSHHH
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHc---CCCHHH
Confidence 9999999999999999986 4444 34556778899999999999999888643 45555555443 466777
Q ss_pred HHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 002900 231 QCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNG 283 (869)
Q Consensus 231 ~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~ 283 (869)
....++.+..+ . ....++.|..++++.++.|...|+.++..+..
T Consensus 160 r~~a~~aL~~~--~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 160 RQSAADALGEI--G-------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHH--C-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHh--C-------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 77777777754 1 14567888888999999999999999988853
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.42 E-value=4.6e-05 Score=88.71 Aligned_cols=344 Identities=13% Similarity=0.113 Sum_probs=210.9
Q ss_pred hhhHHHHHhhcCCCccchhHHHHHHHHh-CCC--cc-hhHh---hhhHHHhhcC-CCCHHHHhHHHHHhccCCC--hhhH
Q 002900 70 EVFFAVTKLFQSRDIGLRRMVYLMIKEL-SPS--AD-EVII---VTSSLMKDMT-SKTDMYRANAIRVLCRITD--GTLL 139 (869)
Q Consensus 70 ~lf~~v~kl~~s~d~~lKrl~Yl~l~~~-~~~--~d-~~~L---vinsl~kDl~-s~n~~vr~lALr~L~~I~~--~~~~ 139 (869)
.....+++.+.|+|...+.-+.-.+..+ +.. +. +.++ ++..|.+-|. +.++.++-.|..+|++|.. ++-.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3456788888999988776666666443 332 21 1222 3455666664 5678999889888888743 3322
Q ss_pred HH-----HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCCh-----hHHHHHHHHHHH
Q 002900 140 TQ-----IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAA-----LVQFHALALLHQ 204 (869)
Q Consensus 140 ~~-----l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~-----~v~~~al~ll~~ 204 (869)
.. .++.+.+++.++++.||..|+.|+..|...+|+.-. ..++.+..++.+.+. .++.++...+..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 22 568888999999999999999999999887776432 245667777765442 356677777777
Q ss_pred HhhcCh-----hHHHHHHHh---hccCCCCChhHHHHHHHHHHHhhhhhcCCCCC------chhhHHHHHHHHhcCChHH
Q 002900 205 IRQNDR-----LAVSKLVTS---LTRGTVRSPLAQCLLIRYTTQVIREAATTQTG------DRPFYDFLESCLRHKAEMV 270 (869)
Q Consensus 205 i~~~d~-----~~~~~li~~---l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~------~~~l~~~l~~~L~~~~~aV 270 (869)
++.+.. ..+..+++. +.. ...+-.+......+..+. . .+.. ...+++.|..+|.+.+..|
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~a~~aL~~l~-~---~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 309 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLT-D---GPNERIEMVVKKGVVPQLVKLLGATELPI 309 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHH-S---SCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhc--CCcHHHHHHHHHHHHHhh-h---hhhhhHHHHHhccchHHHHHHhcCCChhH
Confidence 765421 112233332 211 123333333333333321 1 1211 1235677888999999999
Q ss_pred HHHHHHHHHhccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhcc----------------------ccCCCC
Q 002900 271 IFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNK----------------------SLISDQ 323 (869)
Q Consensus 271 ~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~----------------------~~L~d~ 323 (869)
...|++++..+...+.... ..++..|..+|.++++.+|..+..+|.. .++.++
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 389 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 389 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC
Confidence 9999999988853333221 2355678888999999998777766643 456788
Q ss_pred CHHHHHHHHHHhhccC---ChhhHHHH-----HHHHHHhhhhccHHHHHHHHHHHHHHHh---hCCccHHHHHHHHHHHH
Q 002900 324 NRSIATLAITTLLKTG---NESSVDRL-----MKQITNFMSDIADEFKIVVVEAIRSLCL---KFPLKYRSLMNFLSNIL 392 (869)
Q Consensus 324 d~sI~~~aL~lL~~l~---~e~nv~~I-----l~eL~~y~~~~~~~~r~~~v~aI~~la~---k~~~~~~~~v~~ll~ll 392 (869)
+..+++.|.-.|..++ +.+++..+ ++-|...+...|.+++..++.+|..+.. +.+.. +.+..++
T Consensus 390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~-----~~~~~~i 464 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGET-----EKLSIMI 464 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccCh-----HHHHHHH
Confidence 8889988888877764 55555554 3446666777788888777777766643 33322 1222344
Q ss_pred hhcCCcchHHHHHHHHHHHH-HhCCchHHHHHHHHHHhhh
Q 002900 393 REEGGFEYKKAIVDSIVILI-RDIPDAKENGLLHLCEFIE 431 (869)
Q Consensus 393 ~~~g~~~~~~~iv~~i~~ii-~~~p~~~~~~l~~L~~~l~ 431 (869)
...|+. +.|..+. ..++++++.+...+-.|+.
T Consensus 465 ee~ggl-------~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 465 EECGGL-------DKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHTTCH-------HHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHCCcH-------HHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 444542 2222221 2344566666666656653
No 50
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.41 E-value=1.3e-06 Score=95.34 Aligned_cols=259 Identities=10% Similarity=0.086 Sum_probs=141.4
Q ss_pred HHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHH
Q 002900 50 ITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRV 129 (869)
Q Consensus 50 l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~ 129 (869)
++|++|++..-..-..-|+--.--.+.|=++++|+-.|-+.-=+++.+. .++.+--+...+++-|.|+||++|..|+-+
T Consensus 84 lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~-~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~ 162 (355)
T 3tjz_B 84 LRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT-DSTMLQAIERYMKQAIVDKVPSVSSSALVS 162 (355)
T ss_dssp HHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC-CTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8899998775431112244444445556678999877777666665554 345666788889999999999999999988
Q ss_pred hccC--CChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhh
Q 002900 130 LCRI--TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (869)
Q Consensus 130 L~~I--~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~ 207 (869)
..++ ..|++++.+...+++++.|++|.|--.|+.+++.+.+.++..+.+++..+.+. .-++|..+..-+..+..+.+
T Consensus 163 ~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 163 SLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRH-GLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp HHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC--
T ss_pred HHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcc
Confidence 8875 46889999999999999999999998888888888877776666666655431 11244443333333323334
Q ss_pred cC-hh---HHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 002900 208 ND-RL---AVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNG 283 (869)
Q Consensus 208 ~d-~~---~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~ 283 (869)
.| +. .+..++..... -.++.......|.+..+. . ..+.........+..+|.++++.+.|-|.+.+..+..
T Consensus 242 ~d~~~~~~~~~~~l~~~L~--~~~~aVvyEa~k~I~~l~-~--~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 242 DEDGSRDSPLFDFIESCLR--NKHEMVVYEAASAIVNLP-G--CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp ---------------CCCC--CSSHHHHHHHHHHHTC--------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred ccchhhHHHHHHHHHHHHc--CCChHHHHHHHHHHHhcc-C--CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 44 22 23333433332 256766667777765431 1 1233334456778889999999999999999988754
Q ss_pred CChHhHhhHHHHHHHHHcCCCchhHHHHHHHh
Q 002900 284 VTNRELTPAITVLQLFLSSSKPVLRFAAVRTL 315 (869)
Q Consensus 284 ~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l 315 (869)
..+..+..+..-+-.++++++..++-.|+-+|
T Consensus 317 ~~P~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 317 KHPSAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp --------------------------------
T ss_pred HCcHHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 45566666666677888989888888888776
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.35 E-value=1e-05 Score=84.03 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=127.8
Q ss_pred hHHHhhcCCCCHHHHhHHHHHhccCCC--hhhH-----HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH----
Q 002900 109 SSLMKDMTSKTDMYRANAIRVLCRITD--GTLL-----TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK---- 177 (869)
Q Consensus 109 nsl~kDl~s~n~~vr~lALr~L~~I~~--~~~~-----~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~---- 177 (869)
+.+.+.|.|+|+.+|-.|+++|+++.. .+.. ...++.+.+.+.+.++.||..|+.++..+...+++...
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 445555666666666666655544322 1111 12567778888888899999999999988876665433
Q ss_pred -HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhH
Q 002900 178 -RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFY 256 (869)
Q Consensus 178 -~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~ 256 (869)
..++.+..++.+.++.++.+|+.+|..+...+......++ . ...+
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---------------------~-------------~~~i 140 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI---------------------D-------------AGAL 140 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH---------------------H-------------TTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH---------------------H-------------CCCH
Confidence 3667788888888888988888888887654321100010 0 0124
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHH
Q 002900 257 DFLESCLRHKAEMVIFEAARAITELNGVTNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLA 331 (869)
Q Consensus 257 ~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~a 331 (869)
+.+..+|++.+..|..+|+.++..+...+.... ..++..|..+ +++++..++..+
T Consensus 141 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l--------------------l~~~~~~v~~~a 200 (252)
T 4db8_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL--------------------LSSPNEQILQEA 200 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHG--------------------GGCSSHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH--------------------HCCCCHHHHHHH
Confidence 456666777777888888888887754332221 1122333333 344455555555
Q ss_pred HHHhhccC--ChhhHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 002900 332 ITTLLKTG--NESSVDR-----LMKQITNFMSDIADEFKIVVVEAIRSLC 374 (869)
Q Consensus 332 L~lL~~l~--~e~nv~~-----Il~eL~~y~~~~~~~~r~~~v~aI~~la 374 (869)
+.+|..++ ++.+... ++..|...+.+.+.+.|..+..+|+.++
T Consensus 201 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 55555553 3333333 3444666666667788888888877765
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.26 E-value=8.8e-05 Score=76.40 Aligned_cols=209 Identities=21% Similarity=0.193 Sum_probs=146.6
Q ss_pred HHHHHhhcCCCccchhHHHHHHHHhCCCcc-hh--H---hhhhHHHhhcCCCCHHHHhHHHHHhccCCCh--hhHHH---
Q 002900 73 FAVTKLFQSRDIGLRRMVYLMIKELSPSAD-EV--I---IVTSSLMKDMTSKTDMYRANAIRVLCRITDG--TLLTQ--- 141 (869)
Q Consensus 73 ~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d-~~--~---Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~--~~~~~--- 141 (869)
..+++++.+++...++-+--++..++...+ .. + =++..|.+-|.++++.+|..|+++|+++... +....
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 345677788888888888888877765432 21 1 1577888899999999999999999998764 33332
Q ss_pred --HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHH
Q 002900 142 --IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (869)
Q Consensus 142 --l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~ 214 (869)
..+.+.+.+.+.++.||..|+.++..+...+++... ..++.+.+++.+.++.++.+|+.+|..+...++....
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 164 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 577888889999999999999999999977776544 4678888889988999999999998888764321111
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhH-----
Q 002900 215 KLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL----- 289 (869)
Q Consensus 215 ~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~----- 289 (869)
.++. ...++.+..+|++.++.|...|+.++..+........
T Consensus 165 ~~~~----------------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 210 (252)
T 4hxt_A 165 AIVD----------------------------------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD 210 (252)
T ss_dssp HHHH----------------------------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHH----------------------------------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1110 1234566667777788899999999988853222221
Q ss_pred hhHHHHHHHHHcCCCchhHHHHHHHh
Q 002900 290 TPAITVLQLFLSSSKPVLRFAAVRTL 315 (869)
Q Consensus 290 ~~a~~~L~~~L~s~~~n~ry~aL~~l 315 (869)
..++..|..++.++++.+|..++.+|
T Consensus 211 ~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 211 AGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 23455566666655555555555544
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.24 E-value=7.5e-05 Score=77.36 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=133.7
Q ss_pred chhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCc-c--hhHh---hhhHHHhhcCCCCHHHHhHHHHHhccCCC--hhh
Q 002900 67 EATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-D--EVII---VTSSLMKDMTSKTDMYRANAIRVLCRITD--GTL 138 (869)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~-d--~~~L---vinsl~kDl~s~n~~vr~lALr~L~~I~~--~~~ 138 (869)
+-...|..+++++.|+|...++-+--.+..+.... + ..++ ++..|.+-|.++++.+|..|+++|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 44456788889999999999888777774433211 1 1222 56778888999999999999999999875 333
Q ss_pred HHH-----HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 139 LTQ-----IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 139 ~~~-----l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
... ..+.+.+.+.+.++.||..|+.++..+....+.... ..++.+.+++.+.++.++..|+.+|..+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 333 577888999999999999999999999876654422 4778888999998999999999998888765
Q ss_pred ChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 002900 209 DRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN 282 (869)
Q Consensus 209 d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~ 282 (869)
++.... .+. . ...++.+..+|++.++.|...|+.++..+.
T Consensus 169 ~~~~~~----------------------~~~----~--------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 169 GNEQIQ----------------------AVI----D--------AGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp CHHHHH----------------------HHH----H--------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred ChHHHH----------------------HHH----H--------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 321111 111 0 113456667777788889999999998885
No 54
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.13 E-value=2.3e-06 Score=79.92 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=83.0
Q ss_pred hhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHh
Q 002900 71 VFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI 150 (869)
Q Consensus 71 lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l 150 (869)
....+.+++.++|...|+...-++..+. +.. +..|.+-|.|+|+.+|..|+++|+++++++.++.+. +++
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~---~~~---~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~----~~L 82 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMG---DEA---FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLI----KLL 82 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCS---STT---HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHH----HHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhC---chH---HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHH
Confidence 3445667788888888877666554332 222 477888889999999999999999999877655544 455
Q ss_pred cCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002900 151 VDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLH 203 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~ 203 (869)
.|+++.||..|+.++.++. .++. ++.+.+++.|.++.|...|...|.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~--~~~a----~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG--GERV----RAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC--SHHH----HHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHH----HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7999999999999999886 4444 445556777888889888876654
No 55
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.12 E-value=0.00013 Score=73.28 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=131.8
Q ss_pred chhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCc-ch--hHh---hhhHHHhhcCCCCHHHHhHHHHHhccCC--Chhh
Q 002900 67 EATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-DE--VII---VTSSLMKDMTSKTDMYRANAIRVLCRIT--DGTL 138 (869)
Q Consensus 67 e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~-d~--~~L---vinsl~kDl~s~n~~vr~lALr~L~~I~--~~~~ 138 (869)
.-...+..+++++.++|...++-+..++..++... +. .++ ++..|.+-|.++++.+|..|+++|+++. .++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 44456677888999999999999998888887542 22 222 4677888889999999999999999986 3443
Q ss_pred HHH-----HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 139 LTQ-----IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 139 ~~~-----l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
... .++.+.+.+.+.++.||+.|+.++..+...+++..+ ..++.+.+++.+.++.++.+|+.+|..+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 333 457888899999999999999999999887776543 4678888889888899999999988888765
Q ss_pred ChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 209 DRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 209 d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
++... . .+. . ...++.|..++++.++.|..+|+.++..+
T Consensus 169 ~~~~~-------------------~---~~~----~--------~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 169 GNEQK-------------------Q---AVK----E--------AGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp CHHHH-------------------H---HHH----H--------TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CcHHH-------------------H---HHH----H--------CCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 32110 0 111 0 11345666677777778888888777665
No 56
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.06 E-value=0.00025 Score=68.11 Aligned_cols=197 Identities=17% Similarity=0.222 Sum_probs=147.8
Q ss_pred ccCCCCCHHHHHHHHHHhhccC--ChhhHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhh
Q 002900 318 SLISDQNRSIATLAITTLLKTG--NESSVDRLMKQITNFMS-DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILRE 394 (869)
Q Consensus 318 ~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~Il~eL~~y~~-~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~ 394 (869)
.+|+|+==.+++-||.++..+. -++-.+.++++|...++ +-.-..-.++.+++|.++.--|+.-+.++..++.-.+.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyri 118 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRI 118 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhc
Confidence 3466655678899999887774 45678888888887654 33446788999999999998898888888888877764
Q ss_pred cCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCC---CCChHHHHHHHHhhccCCC
Q 002900 395 EGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPK---TSDPSKYIRYIYNRVHLEN 471 (869)
Q Consensus 395 ~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~---~~~~~~~l~~i~~~~~~e~ 471 (869)
|+-..+--+-.++-.|.+.||++-..+..-+...+.+.+ ..=+..++.++|-.|.. ...| ++-.+..-+...+
T Consensus 119 -gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~~yv~P--fLprL~aLL~D~d 194 (253)
T 2db0_A 119 -GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYVNP--FLPRIINLLHDGD 194 (253)
T ss_dssp -CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTHHHHGG--GHHHHHGGGGCSS
T ss_pred -CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCccccCc--chHHHHHHHcCcc
Confidence 455566677788999999999999999999998888644 33344455555554442 2122 3445555556679
Q ss_pred HHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 002900 472 ATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYL 519 (869)
Q Consensus 472 ~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl 519 (869)
..||++++.++.+++..+|.+++.|...+++. +|.+..|+....+-+
T Consensus 195 eiVRaSaVEtL~~lA~~npklRkii~~kl~e~-~D~S~lv~~~V~egL 241 (253)
T 2db0_A 195 EIVRASAVEALVHLATLNDKLRKVVIKRLEEL-NDTSSLVNKTVKEGI 241 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence 99999999999999999999999888888854 677777877766643
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.92 E-value=0.00043 Score=69.41 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHH
Q 002900 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (869)
Q Consensus 140 ~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~ 214 (869)
+...+.+.+++.+.++.||..|+.++..+...+++... ..++.+.++|.+.++.++..|+.+|..+..+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34567788888999999999999999999877776543 3667888888888999999999888888754321111
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhH-----
Q 002900 215 KLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNREL----- 289 (869)
Q Consensus 215 ~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~----- 289 (869)
.++ . ...++.+..+|++.+..|..+|+.++..+........
T Consensus 91 ~i~---------------------~-------------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (210)
T 4db6_A 91 AVI---------------------D-------------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136 (210)
T ss_dssp HHH---------------------H-------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHH---------------------H-------------CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 110 0 0124566667777788888899999888853333221
Q ss_pred hhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCC--hhhHHH-----HHHHHHHhhhhccHHH
Q 002900 290 TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGN--ESSVDR-----LMKQITNFMSDIADEF 362 (869)
Q Consensus 290 ~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~--e~nv~~-----Il~eL~~y~~~~~~~~ 362 (869)
..++..|..++ ++++..++..++..|..++. +.+... .+..|...+.+.+.+.
T Consensus 137 ~~~i~~L~~ll--------------------~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 196 (210)
T 4db6_A 137 AGALPALVQLL--------------------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196 (210)
T ss_dssp TTHHHHHHHHT--------------------TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred cCcHHHHHHHH--------------------cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 12333444443 44455556566555555543 233322 3555666677778888
Q ss_pred HHHHHHHHHHHHh
Q 002900 363 KIVVVEAIRSLCL 375 (869)
Q Consensus 363 r~~~v~aI~~la~ 375 (869)
+..+..+++.++.
T Consensus 197 ~~~a~~aL~~l~~ 209 (210)
T 4db6_A 197 QKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888864
No 58
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.89 E-value=0.00091 Score=80.98 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=156.8
Q ss_pred hhHHHhhcC---CCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCC--------hHHHHHHHHHHhhhcc--cChH
Q 002900 108 TSSLMKDMT---SKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKN--------PVVASAALVSGIHLLQ--TTPE 174 (869)
Q Consensus 108 insl~kDl~---s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~--------p~VRk~A~lal~~L~~--~~pe 174 (869)
...|.+-|- +.++++|+-|+-.||-|....-- .....+...+.+.+ +.||..|++++.-.+- .+++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee 472 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE 472 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH
Confidence 444455554 78899999999999977544321 23344455455443 8999999999998764 4566
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH--hhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCc
Q 002900 175 IVKRWSNEVQEAVQSRAALVQFHALALLHQI--RQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGD 252 (869)
Q Consensus 175 ~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i--~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~ 252 (869)
++..+. .++.++++.+...|...|..+ ...+..++..|+..+... ....|..-..+-+-..++ . ++...
T Consensus 473 v~e~L~----~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~-g---~~e~~ 543 (963)
T 4ady_A 473 VYEALK----EVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINY-G---RQELA 543 (963)
T ss_dssp HHHHHH----HHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTT-T---CGGGG
T ss_pred HHHHHH----HHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhC-C---ChHHH
Confidence 665544 444444554332333334444 445567777777644311 233443322222211111 1 34333
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHH--hccCCChHhHhhHHH-HHHHHHcCCCchhHHHHHHHhcc------------
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAIT--ELNGVTNRELTPAIT-VLQLFLSSSKPVLRFAAVRTLNK------------ 317 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~--~l~~~~~~~~~~a~~-~L~~~L~s~~~n~ry~aL~~l~~------------ 317 (869)
+.+++ .+..+.++.|.|.++-++. +...... .++. +|....+..+..+|-.|+-.|..
T Consensus 544 ~~li~---~L~~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 544 DDLIT---KMLASDESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp HHHHH---HHHHCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 33333 3334577888888877663 2221111 3343 44444445555666555444432
Q ss_pred --ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCC----ccHHHHHHHHHHH
Q 002900 318 --SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFP----LKYRSLMNFLSNI 391 (869)
Q Consensus 318 --~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~----~~~~~~v~~ll~l 391 (869)
.+.++.|+.||+-+.-.|-.++..+.-..+++-|..+..+.++..|..++.++|.+...-. +....++..|.+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 2446788999977776665554434346677777777888999999999999999976432 2466777777777
Q ss_pred Hhh
Q 002900 392 LRE 394 (869)
Q Consensus 392 l~~ 394 (869)
+.+
T Consensus 697 ~~d 699 (963)
T 4ady_A 697 ITN 699 (963)
T ss_dssp HHC
T ss_pred Hhc
Confidence 764
No 59
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.87 E-value=0.029 Score=65.23 Aligned_cols=341 Identities=13% Similarity=0.042 Sum_probs=192.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhcccChHH---H-H-HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHH
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---V-K-RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLV 217 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~---v-~-~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li 217 (869)
++.+.+.|.+.++-++..|+.++.++...+++. + . ..++.+.++|.+.++.++.+|..+|..|...+....+..+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 456677788899999999999999988656543 2 2 4678888999999999999999999888764111111111
Q ss_pred HhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhc-CChHHHHHHHHHHHhccCCCh---HhHhhHH
Q 002900 218 TSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRH-KAEMVIFEAARAITELNGVTN---RELTPAI 293 (869)
Q Consensus 218 ~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~-~~~aV~~ea~~~i~~l~~~~~---~~~~~a~ 293 (869)
.+. | + ++.|..+|++ .+..+.-.|+.++..|...+. .....++
T Consensus 130 ~~~--G------a-------------------------Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~al 176 (584)
T 3l6x_A 130 KNC--D------G-------------------------VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL 176 (584)
T ss_dssp HHT--T------H-------------------------HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTH
T ss_pred HHc--C------C-------------------------HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccH
Confidence 110 1 1 2234444444 344566667777777753221 1222344
Q ss_pred HHHHHHHcCCCchhHHHHHH--Hhcc-ccCCCCCHHHHHHHHHHhhccCC--hhhHHHHH------HHHHHhhhh-----
Q 002900 294 TVLQLFLSSSKPVLRFAAVR--TLNK-SLISDQNRSIATLAITTLLKTGN--ESSVDRLM------KQITNFMSD----- 357 (869)
Q Consensus 294 ~~L~~~L~s~~~n~ry~aL~--~l~~-~~L~d~d~sI~~~aL~lL~~l~~--e~nv~~Il------~eL~~y~~~----- 357 (869)
..|..++..+. .+.. .... ...+.+|..++.-|..+|..++. +++-..|+ +-|..|+..
T Consensus 177 p~Lv~LL~~p~-----sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~ 251 (584)
T 3l6x_A 177 HALTDEVIIPH-----SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK 251 (584)
T ss_dssp HHHHHHTHHHH-----HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccc-----ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhccc
Confidence 44444431000 0000 0000 01123456677777777777753 23233222 344455543
Q ss_pred -ccHHHHHHHHHHHHHHHhhC-------------------------CccHH-----HHHHHHHHHHhhcCCcchHHHHHH
Q 002900 358 -IADEFKIVVVEAIRSLCLKF-------------------------PLKYR-----SLMNFLSNILREEGGFEYKKAIVD 406 (869)
Q Consensus 358 -~~~~~r~~~v~aI~~la~k~-------------------------~~~~~-----~~v~~ll~ll~~~g~~~~~~~iv~ 406 (869)
.+...+..++-++..|+-+. +.... ..+..|+.+|.......+++.++-
T Consensus 252 ~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~ 331 (584)
T 3l6x_A 252 DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAG 331 (584)
T ss_dssp CCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHH
Confidence 34567777888887776431 11112 345678888876555667777777
Q ss_pred HHHHHHHhCC----ch-----HHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChH----HHHHHHHhhccCC---
Q 002900 407 SIVILIRDIP----DA-----KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPS----KYIRYIYNRVHLE--- 470 (869)
Q Consensus 407 ~i~~ii~~~p----~~-----~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~----~~l~~i~~~~~~e--- 470 (869)
++..+..... .. ++.++..|.+.+.. ....++..++|.|+.-+....+-. ..+..+...+...
T Consensus 332 AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN-EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCS
T ss_pred HHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccc
Confidence 8888865431 11 25678899999976 456788888898888765443321 2233344333222
Q ss_pred -----CHHHHHHHHHHHHHHhccccCchHH-----HHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 002900 471 -----NATVRAAAVSTLAKFGAMVDALKPR-----VFVLLRRCLYDG--DDEVRDRATLYLNTV 522 (869)
Q Consensus 471 -----~~~vr~~~ltal~Kl~~~~~~l~~~-----i~~ll~~~~~d~--d~evrdRA~~yl~ll 522 (869)
+..++..++.++..+....++.... .+..|-..+.+. +..++.-|...+.-+
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 4677888888888776655432221 123333334443 566666666544433
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.83 E-value=0.0068 Score=68.90 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=77.2
Q ss_pred hhHHHhhcCCCCHHHHhHHHHHhccCC--ChhhH----H-HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH---
Q 002900 108 TSSLMKDMTSKTDMYRANAIRVLCRIT--DGTLL----T-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK--- 177 (869)
Q Consensus 108 insl~kDl~s~n~~vr~lALr~L~~I~--~~~~~----~-~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~--- 177 (869)
+..+.+-|.++|+.+|..|..+|.++. ++..- + ..++.+.++|.+.++.+++.|+-++..|...+++.-.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445666677888888888888887754 22222 1 1567888899999999999999999999876666433
Q ss_pred --HHHHHHHHHhc-CCChhHHHHHHHHHHHHhhc
Q 002900 178 --RWSNEVQEAVQ-SRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 178 --~~~~~l~~~l~-d~~~~v~~~al~ll~~i~~~ 208 (869)
..++.+.++|. +.++.++.+|..+|..+...
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 35678888888 77889999999999988865
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.82 E-value=0.00019 Score=71.87 Aligned_cols=180 Identities=9% Similarity=0.087 Sum_probs=118.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHhhc--C---hhHHHHHHHhhc-cCCCCChhHHHHHHHHHHHhhhhhcCCCCCc
Q 002900 179 WSNEVQEAVQSRAALVQFHALALLHQIRQN--D---RLAVSKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQTGD 252 (869)
Q Consensus 179 ~~~~l~~~l~d~~~~v~~~al~ll~~i~~~--d---~~~~~~li~~l~-~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~ 252 (869)
-+..+..++.|+|+.|..+|+.++.++-+. + +..+.+++..+- --...+.=..+..+|.+..++..-+.+|+.-
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 445566777788888888888887777544 1 122344444332 0002344455666777766554433444445
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHH
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAI 332 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL 332 (869)
.++.+.+.+++.+.+.....||+-.+-.+. .......+.+.+..++.|+++.++-+|++.+ +
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklk--v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L----------------~ 175 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQ--PLEDSKLVRTYINELVVSPDLYTKVAGFCLF----------------L 175 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCC--BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHH----------------H
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCC--cccchHHHHHHHHHHHhCCChhHHHHHHHHH----------------H
Confidence 667778888899999999999999998884 2223346777888888777776666666654 2
Q ss_pred HHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhh
Q 002900 333 TTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLK 376 (869)
Q Consensus 333 ~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k 376 (869)
++.-..++.+.++.|++|+..+++..|..++..++.++..+..+
T Consensus 176 eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 176 NMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 23333455666888888888888877888888888888877764
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.82 E-value=0.0035 Score=71.34 Aligned_cols=332 Identities=11% Similarity=0.041 Sum_probs=182.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhhcccChHH---H-H-HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHH
Q 002900 144 RYLKQAIVDKNPVVASAALVSGIHLLQTTPEI---V-K-RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVT 218 (869)
Q Consensus 144 ~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~---v-~-~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~ 218 (869)
+.+.+.|.+.++.++..|+.++.++...+++. + + ..++.+.++|.+.++.++..|..+|..+...++. .+..+
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~-~k~~i- 82 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT-NKLET- 82 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH-HHHHH-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-HHHHH-
Confidence 45566678889999999999999988665542 2 2 4678888999988999999999998887754221 11111
Q ss_pred hhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHh-cCChHHHHHHHHHHHhccCCC---hHhHhhHHH
Q 002900 219 SLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLR-HKAEMVIFEAARAITELNGVT---NRELTPAIT 294 (869)
Q Consensus 219 ~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~-~~~~aV~~ea~~~i~~l~~~~---~~~~~~a~~ 294 (869)
.. . --++.+..+|+ +.+..+..+|+.++..+...+ ......++.
T Consensus 83 -------------------~~----~---------G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~ 130 (457)
T 1xm9_A 83 -------------------RR----Q---------NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALP 130 (457)
T ss_dssp -------------------HH----T---------TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHH
T ss_pred -------------------HH----c---------CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHH
Confidence 00 0 01345556666 667788888888887774321 112235666
Q ss_pred HHHHHHc--------CCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCC-hhhHHHH------HHHHHHhhhh--
Q 002900 295 VLQLFLS--------SSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGN-ESSVDRL------MKQITNFMSD-- 357 (869)
Q Consensus 295 ~L~~~L~--------s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~-e~nv~~I------l~eL~~y~~~-- 357 (869)
.|..+|. ++....| ...+..+.+.|..+|..++. +++.+.+ +.-|..++..
T Consensus 131 ~Lv~ll~~~~s~~~~~~~~~~~------------e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 131 VLADRVIIPFSGWCDGNSNMSR------------EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp HHHHHTTHHHHTCC---------------------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccCccchhc------------ccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 6766662 1111000 00234455555555554443 2222211 1222222221
Q ss_pred ----ccHHHHHHHHHHHHHHHhh--------------------------------------------------CCccH--
Q 002900 358 ----IADEFKIVVVEAIRSLCLK--------------------------------------------------FPLKY-- 381 (869)
Q Consensus 358 ----~~~~~r~~~v~aI~~la~k--------------------------------------------------~~~~~-- 381 (869)
.+...+..++..+..++-+ -|...
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence 1222333333333333200 01111
Q ss_pred ---HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCc----h-H-----HHHHHHHHHhhhccCchhHHHHHHhhhcC
Q 002900 382 ---RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPD----A-K-----ENGLLHLCEFIEDCEFTYLSTQILHFLGT 448 (869)
Q Consensus 382 ---~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~----~-~-----~~~l~~L~~~l~~~~~~~~~~~~l~ilGE 448 (869)
.-.+..++.+|.......+++.+.-.+..+...+.. . | ..++..|.+.+.+ ...+++..++|.|+.
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~-~~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSN 357 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC-CCHhHHHHHHHHHHH
Confidence 224566778887665556667666578777764432 1 1 2456778888876 456788888999988
Q ss_pred CCCCCCCh----HHHHHHHHhhccCC------CHHHHHHHHHHHHHHhccccCch-----HHHHHHHHHhhcCC-CHHHH
Q 002900 449 EGPKTSDP----SKYIRYIYNRVHLE------NATVRAAAVSTLAKFGAMVDALK-----PRVFVLLRRCLYDG-DDEVR 512 (869)
Q Consensus 449 ~~~~~~~~----~~~l~~i~~~~~~e------~~~vr~~~ltal~Kl~~~~~~l~-----~~i~~ll~~~~~d~-d~evr 512 (869)
.+...... ...+..+.+.+... ++.+..+++.++..+....++.. .....-|.....+. +.+++
T Consensus 358 ls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 358 MSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp HHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred HhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 75532211 11223333333222 24677788888888766544321 12333344445555 78999
Q ss_pred HHHHHHHHHh
Q 002900 513 DRATLYLNTV 522 (869)
Q Consensus 513 dRA~~yl~ll 522 (869)
..|+..+.-+
T Consensus 438 ~~A~~~L~~~ 447 (457)
T 1xm9_A 438 EAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8888765543
No 63
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.72 E-value=0.0099 Score=57.23 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=127.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHHhhcChhHHHHHHH
Q 002900 143 ERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAA----LVQFHALALLHQIRQNDRLAVSKLVT 218 (869)
Q Consensus 143 ~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~----~v~~~al~ll~~i~~~d~~~~~~li~ 218 (869)
...+...|.|.-.-|+|+|+.-+.-+.+.+||+...++.++.-++..+.. .-+..|++.+..+++ .-+.+.++
T Consensus 34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e~v~~vVp 110 (253)
T 2db0_A 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---ELVKSMIP 110 (253)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---HHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---HHHHhhHH
Confidence 33444556888899999999999999999999999888888888765543 234556666555554 45666665
Q ss_pred hhc--cCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHH
Q 002900 219 SLT--RGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVL 296 (869)
Q Consensus 219 ~l~--~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L 296 (869)
-+- |. ...|-..+.+--.+..+++. +|.....+.+-+..++.+.+..=...|.+.|-.++.+......+....|
T Consensus 111 ~lfanyr-igd~kikIn~~yaLeeIara---nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 111 VLFANYR-IGDEKTKINVSYALEEIAKA---NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp HHHHHSC-CCSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHH
T ss_pred HHHHHHh-cCCccceecHHHHHHHHHHh---ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHH
Confidence 331 11 23454444433333333333 5655555555555666666666666666666555443333222222222
Q ss_pred HHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccC--ChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 002900 297 QLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTG--NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLC 374 (869)
Q Consensus 297 ~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~--~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la 374 (869)
. .+|.|.|.-+|.-|.++|..++ |++ +..++.....-+.+.++.....+..+++.++
T Consensus 187 ~--------------------aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 187 I--------------------NLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp H--------------------GGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred H--------------------HHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 1 3477888888888888886664 555 6666665555556777777888888888776
Q ss_pred h
Q 002900 375 L 375 (869)
Q Consensus 375 ~ 375 (869)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.12 Score=61.40 Aligned_cols=404 Identities=10% Similarity=0.106 Sum_probs=210.0
Q ss_pred CCCCHHHHhHHHHHhccCCC---hhhHHHHHHHHHHHh----c--CCChHHHHHHHHHHhhhcccChHHHH------HHH
Q 002900 116 TSKTDMYRANAIRVLCRITD---GTLLTQIERYLKQAI----V--DKNPVVASAALVSGIHLLQTTPEIVK------RWS 180 (869)
Q Consensus 116 ~s~n~~vr~lALr~L~~I~~---~~~~~~l~~~i~~~l----~--d~~p~VRk~A~lal~~L~~~~pe~v~------~~~ 180 (869)
....+.+|+++|=.+++.-. .+.-+.+...|...+ . +..|++ .++-++.-+|+..|++.. .+.
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s~lfl~e~~~ 257 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTLCSEIFLTKGLS 257 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHHHHHHHSTTTHH
T ss_pred ccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHHHHHHHccccHH
Confidence 45566888888877776532 223333444443333 2 456776 566666677888887764 345
Q ss_pred HHHHHHhcC-CChhHHHHHHHHHHHHhhcChhHHHHHH--------HhhccCCCCChhHH-----------------HHH
Q 002900 181 NEVQEAVQS-RAALVQFHALALLHQIRQNDRLAVSKLV--------TSLTRGTVRSPLAQ-----------------CLL 234 (869)
Q Consensus 181 ~~l~~~l~d-~~~~v~~~al~ll~~i~~~d~~~~~~li--------~~l~~~~~~~~~~~-----------------v~l 234 (869)
+.+.+.+.. ++..+..+++-+|...|-+ ..++..+ .++........|+. ..+
T Consensus 258 ~~l~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~L 335 (778)
T 3opb_A 258 KLFKKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL 335 (778)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 555555533 3445666666666666543 1111111 11100000111111 222
Q ss_pred HHHHHHhhhhh---------------cCCCCCch------hhHHHHHHHHhc-CChHHHHHHHHHHHhccCCChHhH--h
Q 002900 235 IRYTTQVIREA---------------ATTQTGDR------PFYDFLESCLRH-KAEMVIFEAARAITELNGVTNREL--T 290 (869)
Q Consensus 235 lr~l~~~~~~~---------------~~dp~~~~------~l~~~l~~~L~~-~~~aV~~ea~~~i~~l~~~~~~~~--~ 290 (869)
.+.+.+++..+ ..+|..++ .+++.|..++++ .+..+.|.+..++.++.+..+... .
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~ 415 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX 415 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence 23333222210 12343332 335556667764 567889999999988864332110 1
Q ss_pred hHHHHHHHHHcCCCchh-----------HHHH--HHHhcc--------ccCCCCCHHHHHHHHHHhhccC-ChhhHHHHH
Q 002900 291 PAITVLQLFLSSSKPVL-----------RFAA--VRTLNK--------SLISDQNRSIATLAITTLLKTG-NESSVDRLM 348 (869)
Q Consensus 291 ~a~~~L~~~L~s~~~n~-----------ry~a--L~~l~~--------~~L~d~d~sI~~~aL~lL~~l~-~e~nv~~Il 348 (869)
+-...|..|...+.|.. .+.. -+.+.. .+++.++..+|..+..+|+.++ +.++-..++
T Consensus 416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lv 495 (778)
T 3opb_A 416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA 495 (778)
T ss_dssp C------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred hhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23344455543321110 0111 011111 5567788999999999999996 455555544
Q ss_pred -----HHHHHhhhhccHH---HHHHHHHHHHHHHhhC------Cc-cHHHHHHHHHHHHhh-cCCc---------c--h-
Q 002900 349 -----KQITNFMSDIADE---FKIVVVEAIRSLCLKF------PL-KYRSLMNFLSNILRE-EGGF---------E--Y- 400 (869)
Q Consensus 349 -----~eL~~y~~~~~~~---~r~~~v~aI~~la~k~------~~-~~~~~v~~ll~ll~~-~g~~---------~--~- 400 (869)
+-|..++.+.... .|..+..++++|+..- +. .....+..|.++|.. .+.. . .
T Consensus 496 qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~ 575 (778)
T 3opb_A 496 QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575 (778)
T ss_dssp HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHH
T ss_pred HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHH
Confidence 4466666554433 7999999999998521 11 112567888998872 1110 0 0
Q ss_pred HHHHHHHHHHHHHhCC----chHHH------HHHHHHHhhhccCchhHHHHHHhhhcCCCCC----------CCChH--H
Q 002900 401 KKAIVDSIVILIRDIP----DAKEN------GLLHLCEFIEDCEFTYLSTQILHFLGTEGPK----------TSDPS--K 458 (869)
Q Consensus 401 ~~~iv~~i~~ii~~~p----~~~~~------~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~----------~~~~~--~ 458 (869)
+-++.-++..+..... +.+.. ++..|.+++.+ +...++++++|++.-.... ..+|. +
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 3345557777776431 34443 44455555544 4556777777776433211 11232 1
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhccccC-------chHHHHHHHHHhhc-CCCHHHHHHHHHH-HHHhCC
Q 002900 459 YIRYIYNRVHLENATVRAAAVSTLAKFGAMVDA-------LKPRVFVLLRRCLY-DGDDEVRDRATLY-LNTVGS 524 (869)
Q Consensus 459 ~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~-------l~~~i~~ll~~~~~-d~d~evrdRA~~y-l~ll~~ 524 (869)
-+..+..-...++..+|.++..|++-+....|. ....+..++..+.. ..+.++|.|+... +++...
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 255565555668999999999998887544432 12233444443332 2789999999964 555543
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.72 E-value=0.0005 Score=71.03 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhc-CCCccchhHHHHHHHHhCCC--c---chhHhhhhHHHhhc
Q 002900 42 DPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQ-SRDIGLRRMVYLMIKELSPS--A---DEVIIVTSSLMKDM 115 (869)
Q Consensus 42 ~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~-s~d~~lKrl~Yl~l~~~~~~--~---d~~~Lvinsl~kDl 115 (869)
+-+.++.++..|-.++.....+...+...+...+.+++. .++...+..+.-++..++.. + ..+-.++..|.+-+
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKF 107 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455557778877777665223333355677778888895 88999998888888777642 1 33456788888889
Q ss_pred CCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccC-hH-----HHHHHHHHHHHHhcC
Q 002900 116 TSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTT-PE-----IVKRWSNEVQEAVQS 189 (869)
Q Consensus 116 ~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~-pe-----~v~~~~~~l~~~l~d 189 (869)
.|+++.+|..|..+|..+....-.+.+.+.+...+.|++|.||..++-.+..+.... |+ .+..+++.+..+++|
T Consensus 108 ~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D 187 (242)
T 2qk2_A 108 KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE 187 (242)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC
Confidence 999999998888887776554456788899999999999999999999999865443 43 456889999999999
Q ss_pred CChhHHHHHHHHHHHHhhc
Q 002900 190 RAALVQFHALALLHQIRQN 208 (869)
Q Consensus 190 ~~~~v~~~al~ll~~i~~~ 208 (869)
+++.|...|...+..+...
T Consensus 188 ~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 188 PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 9999999998888777643
No 66
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.64 E-value=7.9e-05 Score=69.32 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=78.5
Q ss_pred hhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEA 186 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~ 186 (869)
.++.+.+.|+|+|+.+|..|+++|+.++++. .+.+.+++.|++|.||..|+.++.++. .++.+ +.+.++
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~~a~----~~L~~~ 81 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQ--DERAV----EPLIKL 81 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGC--SHHHH----HHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcC--CHHHH----HHHHHH
Confidence 3456778899999999999999999999886 266778889999999999999999986 44444 445556
Q ss_pred hcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHH
Q 002900 187 VQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCL 233 (869)
Q Consensus 187 l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~ 233 (869)
+.|.++.|...|+..|..+.. +.++..|+..+. ..+++....
T Consensus 82 L~d~~~~VR~~A~~aL~~~~~--~~a~~~L~~~l~---d~~~~vr~~ 123 (131)
T 1te4_A 82 LEDDSGFVRSGAARSLEQIGG--ERVRAAMEKLAE---TGTGFARKV 123 (131)
T ss_dssp HHHCCTHHHHHHHHHHHHHCS--HHHHHHHHHHTT---SCCTHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHh---CCCHHHHHH
Confidence 678899999999999888763 345555555443 234544333
No 67
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.61 E-value=0.0052 Score=67.33 Aligned_cols=256 Identities=14% Similarity=0.108 Sum_probs=144.6
Q ss_pred cCCCCHHHHhHHHHHhccCCChhhHHH------HHHHHHHHhc-----------CCChHHHHHHHHHHhhhcccCh---H
Q 002900 115 MTSKTDMYRANAIRVLCRITDGTLLTQ------IERYLKQAIV-----------DKNPVVASAALVSGIHLLQTTP---E 174 (869)
Q Consensus 115 l~s~n~~vr~lALr~L~~I~~~~~~~~------l~~~i~~~l~-----------d~~p~VRk~A~lal~~L~~~~p---e 174 (869)
+-.|++...+.|+++|++|...+-... .++.+.+.|. +.++.+|+.|+.++..|...++ .
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445566888899999998765432222 3445555552 1357899999999999986554 2
Q ss_pred HH---HHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc-ChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCC
Q 002900 175 IV---KRWSNEVQEAVQSRAALVQFHALALLHQIRQN-DRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQT 250 (869)
Q Consensus 175 ~v---~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~-d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~ 250 (869)
.+ ...++.+..+|.+.++.++.+|..+|..+... +.. .+..+.+. |
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i~~~--G--------------------------- 170 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLREV--G--------------------------- 170 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHHHHT--T---------------------------
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHHHHC--C---------------------------
Confidence 33 24588899999988999999999988887653 211 11111000 0
Q ss_pred CchhhHHHHHHH-HhcCChHHHHHHHHHHHhccCCChH----h--HhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCC
Q 002900 251 GDRPFYDFLESC-LRHKAEMVIFEAARAITELNGVTNR----E--LTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQ 323 (869)
Q Consensus 251 ~~~~l~~~l~~~-L~~~~~aV~~ea~~~i~~l~~~~~~----~--~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~ 323 (869)
.++.|..+ +++.+..+.-.|+.++..+...... . ...++..|..+|.++++. .
T Consensus 171 ----~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~----------------~ 230 (354)
T 3nmw_A 171 ----SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT----------------N 230 (354)
T ss_dssp ----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS----------------S
T ss_pred ----CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc----------------c
Confidence 01223332 2344555666666777666431211 1 123455555555443321 0
Q ss_pred CHHHHHHHHHHhhccC-----ChhhHHHH-----HHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHH-----HHHH
Q 002900 324 NRSIATLAITTLLKTG-----NESSVDRL-----MKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSL-----MNFL 388 (869)
Q Consensus 324 d~sI~~~aL~lL~~l~-----~e~nv~~I-----l~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~-----v~~l 388 (869)
+..++..|.-+|..++ ++++...+ +.-|...+.+-+.+.+..++.+|..|+...+.....+ +..|
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 0123333333333332 44444432 3344455555666777777888877775444433322 5567
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH
Q 002900 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKEN 421 (869)
Q Consensus 389 l~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~ 421 (869)
.++|+. ++..+++.+...+..+....|+.+..
T Consensus 311 v~LL~s-~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 311 KNLIHS-KHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HTTTTC-SSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HHHHhC-CCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 777764 34456666666788888777766544
No 68
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.58 E-value=0.029 Score=69.95 Aligned_cols=126 Identities=8% Similarity=0.059 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhhCCc-cHHHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHHHhC-----C--------chHHH
Q 002900 361 EFKIVVVEAIRSLCLKFPL-KYRSLMNFLSNILRE-----EGGFEYKKAIVDSIVILIRDI-----P--------DAKEN 421 (869)
Q Consensus 361 ~~r~~~v~aI~~la~k~~~-~~~~~v~~ll~ll~~-----~g~~~~~~~iv~~i~~ii~~~-----p--------~~~~~ 421 (869)
..|..+...+..++..+++ ....++.++.+.+.. ..+...+++++..+..+..+- + ++...
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 4677888899999999874 334555666666653 233446677787777775421 1 23333
Q ss_pred HHHHHHHhhhcc--CchhHHHHHHhhhcCCCCCCCCh---HHHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q 002900 422 GLLHLCEFIEDC--EFTYLSTQILHFLGTEGPKTSDP---SKYIRYIYNRVHLENATVRAAAVSTLAKFGA 487 (869)
Q Consensus 422 ~l~~L~~~l~~~--~~~~~~~~~l~ilGE~~~~~~~~---~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~ 487 (869)
....+...+.+. .++.++.+++|++|.|++.. .+ ..++..+.+.+..+++.||.++..|+..|..
T Consensus 456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 344555556654 27788999999999998865 22 2234555666666679999999999999876
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.53 E-value=0.069 Score=64.80 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=96.9
Q ss_pred ccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCC
Q 002900 337 KTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIP 416 (869)
Q Consensus 337 ~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p 416 (869)
.+++++.++.+++.|.. +.+.-.|.-.+.+++-.+. .......++-|+..+.....-.++..++..+-.|.-..|
T Consensus 536 ~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAya--GTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 536 NYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYA--GTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred hCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 45677777777666654 2234445444444433222 122334455555554433333355555656655544455
Q ss_pred chHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCc-hHH
Q 002900 417 DAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDAL-KPR 495 (869)
Q Consensus 417 ~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l-~~~ 495 (869)
+. +..+++.+.+-..+.++.+++|-+|.-+....+ .+.+..+..-....++.||..++.|++.+.....+. .+.
T Consensus 611 e~----v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 611 TT----VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp SS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 32 344444444445577788888888876544333 234443333334567888888888888888764322 222
Q ss_pred H---HHHHHHhhc--CCCHHHHHHHHHHHHHhCCC
Q 002900 496 V---FVLLRRCLY--DGDDEVRDRATLYLNTVGSD 525 (869)
Q Consensus 496 i---~~ll~~~~~--d~d~evrdRA~~yl~ll~~~ 525 (869)
+ .+.|..... +.|...+=-|++...++..+
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 2 222223333 35677777777777777655
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.51 E-value=0.0012 Score=68.19 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=19.0
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 254 PFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 254 ~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
.+++.+..+|.+++..|.-.|..++..+
T Consensus 176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 3456677777777777777777776554
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.50 E-value=0.037 Score=64.34 Aligned_cols=137 Identities=11% Similarity=0.005 Sum_probs=79.6
Q ss_pred hHHHHHhhcCCCccchhHHHHHHHHhCCCcch---hHh---hhhHHHhhcCCCCHHHHhHHHHHhccCCC---hhhHHH-
Q 002900 72 FFAVTKLFQSRDIGLRRMVYLMIKELSPSADE---VII---VTSSLMKDMTSKTDMYRANAIRVLCRITD---GTLLTQ- 141 (869)
Q Consensus 72 f~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~---~~L---vinsl~kDl~s~n~~vr~lALr~L~~I~~---~~~~~~- 141 (869)
...+++++.+.+..++.-+=-++..++...+. .+. ++..|.+-|.++++.++..|..+|.+|.. ++.-..
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 34566777777777777666666555532211 111 45666777777777777777777777664 343333
Q ss_pred ----HHHHHHHHhcC-CChHHHHHHHHHHhhhcccChH----HHHHHHHHHHHHh------------------cCCChhH
Q 002900 142 ----IERYLKQAIVD-KNPVVASAALVSGIHLLQTTPE----IVKRWSNEVQEAV------------------QSRAALV 194 (869)
Q Consensus 142 ----l~~~i~~~l~d-~~p~VRk~A~lal~~L~~~~pe----~v~~~~~~l~~~l------------------~d~~~~v 194 (869)
.++.+.+.|.+ .++.+++.|+-|+..|.. +++ +++.-++.+.+++ ...++.|
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 35666667764 566777777777776654 222 2333344444433 1124566
Q ss_pred HHHHHHHHHHHhhcC
Q 002900 195 QFHALALLHQIRQND 209 (869)
Q Consensus 195 ~~~al~ll~~i~~~d 209 (869)
+.+|..+|..+...+
T Consensus 209 ~~nAa~~L~NLs~~~ 223 (584)
T 3l6x_A 209 LTNTAGCLRNVSSER 223 (584)
T ss_dssp HHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 677777766666543
No 72
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.49 E-value=0.014 Score=72.67 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhhCCc-cHHHHHHHHHHHHh---hcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhcc--C
Q 002900 361 EFKIVVVEAIRSLCLKFPL-KYRSLMNFLSNILR---EEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC--E 434 (869)
Q Consensus 361 ~~r~~~v~aI~~la~k~~~-~~~~~v~~ll~ll~---~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~--~ 434 (869)
++|..+...+..++..++. ....+++++...+. ...+...++..+..+..+....++.....+..+...+... .
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~ 501 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISIS 501 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCC
Confidence 3577777777778776663 33444555555552 1223445677777777776654322222344444444332 3
Q ss_pred chhHHHHHHhhhcCCCCCCCChHHHH----HHHHhhccCCCHHHHHHHHHHHHHHhcccc-CchHHHHHH---HHHhhcC
Q 002900 435 FTYLSTQILHFLGTEGPKTSDPSKYI----RYIYNRVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVL---LRRCLYD 506 (869)
Q Consensus 435 ~~~~~~~~l~ilGE~~~~~~~~~~~l----~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~-~l~~~i~~l---l~~~~~d 506 (869)
++.++..++|++|.|........+++ ..+.+.+ .++.||..+..|+.++...++ .+.+.+..+ +......
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l--~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL--GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT--TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 56788889999999986533222444 4445444 237899999999999987654 233333333 3233332
Q ss_pred --CCHHHHHHHHHH
Q 002900 507 --GDDEVRDRATLY 518 (869)
Q Consensus 507 --~d~evrdRA~~y 518 (869)
.+.+.|..+...
T Consensus 580 ~~~~~~~~~~~~ea 593 (963)
T 2x19_B 580 QIHKTSQCMWLMQA 593 (963)
T ss_dssp TCSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH
Confidence 345565555443
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.40 E-value=0.007 Score=68.58 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=63.3
Q ss_pred HHhHHHHHhccCCChhhHHH------HHHHHHHHhc-----------CCChHHHHHHHHHHhhhcccChH---HH---HH
Q 002900 122 YRANAIRVLCRITDGTLLTQ------IERYLKQAIV-----------DKNPVVASAALVSGIHLLQTTPE---IV---KR 178 (869)
Q Consensus 122 vr~lALr~L~~I~~~~~~~~------l~~~i~~~l~-----------d~~p~VRk~A~lal~~L~~~~pe---~v---~~ 178 (869)
..|.|+.+|++|...+-... .++.+.+.+. +.++.+++.|+.++..|...+++ .+ ..
T Consensus 164 ~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp TTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 45699999999875443222 3455666662 13578999999999999876542 33 24
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHhh
Q 002900 179 WSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (869)
Q Consensus 179 ~~~~l~~~l~d~~~~v~~~al~ll~~i~~ 207 (869)
.++.+..+|.+.++.++.+|..+|..+..
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~ 272 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSW 272 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 58888899998899999999998888765
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.076 Score=63.12 Aligned_cols=220 Identities=10% Similarity=0.127 Sum_probs=111.3
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHhccCCChHh-----HhhHHHHHHHHHcCCCch---hHHHHHHHhccccCCCCCHH
Q 002900 255 FYDFLESCLRHKAEMVIFEAARAITELNGVTNRE-----LTPAITVLQLFLSSSKPV---LRFAAVRTLNKSLISDQNRS 326 (869)
Q Consensus 255 l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~-----~~~a~~~L~~~L~s~~~n---~ry~aL~~l~~~~L~d~d~s 326 (869)
.+..|..++++.++.+.-.|++++..+... .+. ...++..|..++.+...+ .|..|.++|.+ ++-..|+.
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr-Llis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR-MLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH-HHHTSCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH-HHhcCCHH
Confidence 566777888888999999999999988643 221 235667777777666443 67777777654 11111211
Q ss_pred HHHHHHHHhhccCC-hhhHHHHHHHHHHhhhh-----------ccHHHHHHHHHHHHHHHhhCC---cc-----H--HHH
Q 002900 327 IATLAITTLLKTGN-ESSVDRLMKQITNFMSD-----------IADEFKIVVVEAIRSLCLKFP---LK-----Y--RSL 384 (869)
Q Consensus 327 I~~~aL~lL~~l~~-e~nv~~Il~eL~~y~~~-----------~~~~~r~~~v~aI~~la~k~~---~~-----~--~~~ 384 (869)
+. +.-.. -.-+..+++-|... ++ .+.--+-+++.++..||.--. +. . .-.
T Consensus 536 ~~-------f~~~~~~~aI~pLv~LL~~~-~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 536 LI-------FKKYSALNAIPFLFELLPRS-TPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HH-------SSSSCSTTHHHHHHHTSCCS-SSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred HH-------cCCCccccchHHHHHHcCCC-CCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 11 00000 01222222222100 00 111124566666666665310 00 1 135
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchH--H-------H---HHHHHHHhhhccCchhHHHHHHhhhcCCCC-
Q 002900 385 MNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAK--E-------N---GLLHLCEFIEDCEFTYLSTQILHFLGTEGP- 451 (869)
Q Consensus 385 v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~--~-------~---~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~- 451 (869)
+..+.+++.++. ..++.+++..+..++. +|+.. + . -++.|..+++. ++.+.+.+++|.++-...
T Consensus 608 ~~~L~~LL~s~n-~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 608 WSTIENLMLDEN-VPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHGGGCSS-HHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCC
Confidence 666777666433 3466667777777764 44321 1 1 25666666643 556666666676665421
Q ss_pred C--C----CChHHHHHHHHhhccC--CCHHHHHHHHHHHHHHhc
Q 002900 452 K--T----SDPSKYIRYIYNRVHL--ENATVRAAAVSTLAKFGA 487 (869)
Q Consensus 452 ~--~----~~~~~~l~~i~~~~~~--e~~~vr~~~ltal~Kl~~ 487 (869)
. . -.-.+.+..+.+-+.. +++.+|.-++.++..++.
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1 0 0112233333332222 567777777777776664
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.019 Score=59.57 Aligned_cols=28 Identities=4% Similarity=-0.038 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 254 PFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 254 ~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
.+++.+..++.+++..|.=.|+.++..+
T Consensus 191 ~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 191 EVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4566777777777777766666666543
No 76
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.89 E-value=0.11 Score=58.56 Aligned_cols=173 Identities=10% Similarity=0.052 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCC-ChHhH-----hhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHH
Q 002900 256 YDFLESCLRHKAEMVIFEAARAITELNGV-TNREL-----TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIAT 329 (869)
Q Consensus 256 ~~~l~~~L~~~~~aV~~ea~~~i~~l~~~-~~~~~-----~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~ 329 (869)
++.|..+|++.+..|...|+.++..+... ...-+ ..++..|..+| ++..+..+++
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL-------------------l~s~~~~v~~ 305 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA-------------------LEVKKESTLK 305 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH-------------------TTCCSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH-------------------hcCCCHHHHH
Confidence 45555566666666666666666555321 11111 12333333332 2333445555
Q ss_pred HHHHHhhccCC--hhhHHHHH------HHHHHhhhhccH----HHHHHHHHHHHHHHh---hCCccHHHH-----HHHHH
Q 002900 330 LAITTLLKTGN--ESSVDRLM------KQITNFMSDIAD----EFKIVVVEAIRSLCL---KFPLKYRSL-----MNFLS 389 (869)
Q Consensus 330 ~aL~lL~~l~~--e~nv~~Il------~eL~~y~~~~~~----~~r~~~v~aI~~la~---k~~~~~~~~-----v~~ll 389 (869)
.|+.+|..+++ ++|-..|+ .-|...+...++ +++..++-+|..|+. ..+.....+ +..|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 55555555543 23322222 222233332222 477777777777775 334333332 45677
Q ss_pred HHHhhcCCcchHHHHHHHHHHHHHhCCchHH-----HHHHHHHHhhhccCchhHHHHHHhhhcCC
Q 002900 390 NILREEGGFEYKKAIVDSIVILIRDIPDAKE-----NGLLHLCEFIEDCEFTYLSTQILHFLGTE 449 (869)
Q Consensus 390 ~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~-----~~l~~L~~~l~~~~~~~~~~~~l~ilGE~ 449 (869)
++|+. ++..++..++-.+..+...+++.+. .++..|++.+.. ...+++..++|.|...
T Consensus 386 ~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 386 QHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNL 448 (458)
T ss_dssp HHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC-SSHHHHHHHHHHHHHH
T ss_pred HHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 77774 5566666666688888766666543 457788888865 4566666667766544
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.82 E-value=0.0071 Score=64.50 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=70.1
Q ss_pred HHHHH-hhcCCCccchhHHHHHHHHhCCCcc---hhHh---hhhHHHhhcC-CCCHHHHhHHHHHhccCC--ChhhHH--
Q 002900 73 FAVTK-LFQSRDIGLRRMVYLMIKELSPSAD---EVII---VTSSLMKDMT-SKTDMYRANAIRVLCRIT--DGTLLT-- 140 (869)
Q Consensus 73 ~~v~k-l~~s~d~~lKrl~Yl~l~~~~~~~d---~~~L---vinsl~kDl~-s~n~~vr~lALr~L~~I~--~~~~~~-- 140 (869)
..+++ ++.+++..+|.-.--++..++...+ ..++ ++..|.+=|. ++++.+|..|+.+|+++. .+...+
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 163 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 44455 6666666666655555555543211 1222 2233333333 345666666666666652 222111
Q ss_pred ---HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 141 ---QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 141 ---~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
..++.+.++|.+.++.||+.|+.++..+...+++... .+++.+.++|.+.++.|+.+|+..|..|...
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 1344555556666666666666666666544444322 3555556666666666666666666555543
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.022 Score=59.00 Aligned_cols=167 Identities=9% Similarity=0.126 Sum_probs=92.3
Q ss_pred hhhccHHHHHHHHHHHHH-HHhh---CC---ccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhC--CchH----HH
Q 002900 355 MSDIADEFKIVVVEAIRS-LCLK---FP---LKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDI--PDAK----EN 421 (869)
Q Consensus 355 ~~~~~~~~r~~~v~aI~~-la~k---~~---~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~--p~~~----~~ 421 (869)
+.+.+-.-|.+++.+++. +++. +. ..+..+++.+.+.+....+..+.......+.++.+.- |... ..
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 334444555666666666 5432 21 1234555555555532333334444455555554432 2332 22
Q ss_pred HHHHHHHhhhccCchhHH---HHHHhhhcCCC-CCCC--ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccC----
Q 002900 422 GLLHLCEFIEDCEFTYLS---TQILHFLGTEG-PKTS--DPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDA---- 491 (869)
Q Consensus 422 ~l~~L~~~l~~~~~~~~~---~~~l~ilGE~~-~~~~--~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~---- 491 (869)
++..+++.+.+-. +.++ ..++--+-++. +... .+..++..+..-+...++.+|.+++.++..++...+.
T Consensus 105 llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 105 VFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp HHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence 3444555554422 1111 11222222222 1111 1456777777766556899999999999998876653
Q ss_pred ---ch-HHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 002900 492 ---LK-PRVFVLLRRCLYDGDDEVRDRATLYLNTV 522 (869)
Q Consensus 492 ---l~-~~i~~ll~~~~~d~d~evrdRA~~yl~ll 522 (869)
.. +.+...+..++.|.+.+||+.|.+.+..+
T Consensus 184 l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 12 56788888899999999999999866553
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.76 E-value=0.051 Score=54.58 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=122.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHH-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc---ChhHH
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI-----VKRWSNEVQEAVQSRAALVQFHALALLHQIRQN---DRLAV 213 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~-----v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~---d~~~~ 213 (869)
....+...+.++++.|+-+|+.++-++.+..|+. ++++++.+..++.+.|..|..+|+-+|..+-.+ ++.++
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4556777889999999999999999988776544 558899999999999999999999998877654 34568
Q ss_pred HHHHHhhc-cCCCCChhHHHHHHHHHHHhhhhhcCCCC-CchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCC--hHhH
Q 002900 214 SKLVTSLT-RGTVRSPLAQCLLIRYTTQVIREAATTQT-GDRPFYDFLESCLRHKAEMVIFEAARAITELNGVT--NREL 289 (869)
Q Consensus 214 ~~li~~l~-~~~~~~~~~~v~llr~l~~~~~~~~~dp~-~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~--~~~~ 289 (869)
.+++..+. -...+++.....+...+..+ .+. ....+.+++.+++.|.+.-|.-.+.+++..+.+.+ +...
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 88776543 01135566655655555543 222 36788999999998889888888888887774321 1111
Q ss_pred hhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCCh
Q 002900 290 TPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE 341 (869)
Q Consensus 290 ~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e 341 (869)
..++. .++ .+|+..|+.++.+||+.|..+.+-
T Consensus 188 ~~I~~----------------eI~----elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 188 TLILD----------------EIP----SLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGTTT----------------THH----HHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHH----------------HHH----HHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11111 122 236667888999999988777554
No 80
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.76 E-value=0.11 Score=64.58 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhCCc-cHHHHHHHHHHHHhhc----CCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhcc--
Q 002900 361 EFKIVVVEAIRSLCLKFPL-KYRSLMNFLSNILREE----GGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDC-- 433 (869)
Q Consensus 361 ~~r~~~v~aI~~la~k~~~-~~~~~v~~ll~ll~~~----g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~-- 433 (869)
++|..+...+..++..++. ....++.++...+... .+....++.+..+..+.+..++.....+..+++.+...
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 5788888889999988773 3445555555555431 34556677777777766544332223344444443222
Q ss_pred --CchhHHHHHHhhhcCCCCCCC-C---hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcccc-CchHHHHHHHH---Hh
Q 002900 434 --EFTYLSTQILHFLGTEGPKTS-D---PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVD-ALKPRVFVLLR---RC 503 (869)
Q Consensus 434 --~~~~~~~~~l~ilGE~~~~~~-~---~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~-~l~~~i~~ll~---~~ 503 (869)
.++.++..++|.+|.|+.... + -..++..+.+.+ ++.|+..+..|+.++...++ .+.+.+..+++ ..
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l---~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~ 592 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL---NSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHAS 592 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH---HSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 267788889999999976543 2 233445555554 16788889999999886553 34444433333 33
Q ss_pred hcC--CCHHHHHHHHH
Q 002900 504 LYD--GDDEVRDRATL 517 (869)
Q Consensus 504 ~~d--~d~evrdRA~~ 517 (869)
... .+.+.+..+..
T Consensus 593 l~~~~~~~~~~~~~~~ 608 (971)
T 2x1g_F 593 LNTGRMKNSDSVRLMF 608 (971)
T ss_dssp HHSTTSCHHHHHHHHH
T ss_pred HcCCCCChHHHHHHHH
Confidence 333 34555555554
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.56 E-value=0.024 Score=60.40 Aligned_cols=129 Identities=11% Similarity=0.107 Sum_probs=80.0
Q ss_pred cCCCCCHHHHHHHHHHhhccC--ChhhHHH-----HHHHHHHhhhh-ccHHHHHHHHHHHHHHHhhCCccHHH-----HH
Q 002900 319 LISDQNRSIATLAITTLLKTG--NESSVDR-----LMKQITNFMSD-IADEFKIVVVEAIRSLCLKFPLKYRS-----LM 385 (869)
Q Consensus 319 ~L~d~d~sI~~~aL~lL~~l~--~e~nv~~-----Il~eL~~y~~~-~~~~~r~~~v~aI~~la~k~~~~~~~-----~v 385 (869)
+|++++..+|..|..+|-.++ |+.+-+. .+.-|...+.+ .+.++|+.++.+|+.++..+++.... .+
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 677777777777777776664 2332222 23344455543 46789999999999998776654332 34
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH-----HHHHHHHhhhccCchhHHHHHHhhhcCC
Q 002900 386 NFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN-----GLLHLCEFIEDCEFTYLSTQILHFLGTE 449 (869)
Q Consensus 386 ~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~-----~l~~L~~~l~~~~~~~~~~~~l~ilGE~ 449 (869)
..|..+|.. ++..++..+.-.+..+....|+.++. ++..|++.+.. .++.++..+++.+|..
T Consensus 170 ~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~-~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 170 SVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT-EHSPFHEHVLGALCSL 236 (296)
T ss_dssp HHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC-CChhHHHHHHHHHHHH
Confidence 567777774 45566666666788887777765443 45566666654 3445555555555543
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.54 E-value=0.57 Score=58.21 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=69.8
Q ss_pred CCCccchhHHHHHHHHhCCC--------c------chhHhhhhHHHhhcCCC---CHHHHhHHHHHhccCCC---hhhHH
Q 002900 81 SRDIGLRRMVYLMIKELSPS--------A------DEVIIVTSSLMKDMTSK---TDMYRANAIRVLCRITD---GTLLT 140 (869)
Q Consensus 81 s~d~~lKrl~Yl~l~~~~~~--------~------d~~~Lvinsl~kDl~s~---n~~vr~lALr~L~~I~~---~~~~~ 140 (869)
+.+-..|.-+++++..++.. . +..-+..+.+..+++++ +|.+|+-|+.+++.+.. ++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 56777888888887766421 1 33344456677777777 99999999999998754 57888
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhhcc
Q 002900 141 QIERYLKQAIVDKNPVVASAALVSGIHLLQ 170 (869)
Q Consensus 141 ~l~~~i~~~l~d~~p~VRk~A~lal~~L~~ 170 (869)
.+.+.+.+++.|.++.||..|+.|+.++..
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 899999999999999999999999999775
No 83
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.52 E-value=2.4 Score=52.62 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=61.2
Q ss_pred cchhhhhHHHHHhh-cCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC---CChh----
Q 002900 66 IEATEVFFAVTKLF-QSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI---TDGT---- 137 (869)
Q Consensus 66 ~e~s~lf~~v~kl~-~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I---~~~~---- 137 (869)
|++..+--++.-.+ ++.|...|+-.+-++.++-..++ +.-.+-.+...-...++.+|-.|+.+|-+. -+++
T Consensus 3 m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~-aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~ 81 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSST-GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLL 81 (980)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT-HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHH
Confidence 44444444442233 34588999999999977655554 333333333221223789998888777642 1233
Q ss_pred hHHHHHHHHHHHhc-----CCChHHHHHHHHHHhhhcc
Q 002900 138 LLTQIERYLKQAIV-----DKNPVVASAALVSGIHLLQ 170 (869)
Q Consensus 138 ~~~~l~~~i~~~l~-----d~~p~VRk~A~lal~~L~~ 170 (869)
-...+-..+...+. +..++||.+.+.++..++.
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 33444444444433 3468999999999987764
No 84
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.39 E-value=0.44 Score=59.85 Aligned_cols=170 Identities=11% Similarity=0.071 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHhhccCCh------------hhHHHHHHHHHHhhhh------------------c-cH---HHHHHH
Q 002900 321 SDQNRSIATLAITTLLKTGNE------------SSVDRLMKQITNFMSD------------------I-AD---EFKIVV 366 (869)
Q Consensus 321 ~d~d~sI~~~aL~lL~~l~~e------------~nv~~Il~eL~~y~~~------------------~-~~---~~r~~~ 366 (869)
..+|..++..+++....++.+ ..+..|+.-+...|.- . +. +++..+
T Consensus 354 ~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~ 433 (1049)
T 3m1i_C 354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSE 433 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHH
Confidence 455777888888877766541 1233444444433310 0 11 345556
Q ss_pred HHHHHHHHhhCCcc-HHHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHhCCchHH-HHHHHHHHhhhc-cC-----chh
Q 002900 367 VEAIRSLCLKFPLK-YRSLMNFLSNILRE-EGGFEYKKAIVDSIVILIRDIPDAKE-NGLLHLCEFIED-CE-----FTY 437 (869)
Q Consensus 367 v~aI~~la~k~~~~-~~~~v~~ll~ll~~-~g~~~~~~~iv~~i~~ii~~~p~~~~-~~l~~L~~~l~~-~~-----~~~ 437 (869)
-..+..++..++.. ...+.+.+-..+.. ..+....++.+..+..+.....+..+ ..+..+..++.. +. ++.
T Consensus 434 ~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~ 513 (1049)
T 3m1i_C 434 REVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK 513 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence 66777777766542 23444444444431 12333456666666655443322212 224444444322 11 233
Q ss_pred --HHHHHHhhhcCCCCCCCChHHHH----HHHHhhccCCCHHHHHHHHHHHHHHhcccc
Q 002900 438 --LSTQILHFLGTEGPKTSDPSKYI----RYIYNRVHLENATVRAAAVSTLAKFGAMVD 490 (869)
Q Consensus 438 --~~~~~l~ilGE~~~~~~~~~~~l----~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~ 490 (869)
++..++|++|.|+.......+++ ..+.+.+...++.||..+..|+.+++..++
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 33358899999986533223444 455555555579999999999999988664
No 85
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.22 E-value=0.49 Score=54.86 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=103.6
Q ss_pred HhhcCCCccchhHHHHHHHHhCCC-cch-----hHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChh-------------
Q 002900 77 KLFQSRDIGLRRMVYLMIKELSPS-ADE-----VIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGT------------- 137 (869)
Q Consensus 77 kl~~s~d~~lKrl~Yl~l~~~~~~-~d~-----~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~------------- 137 (869)
++-.++-.+-||=.-+.++.++.. +.. +--.+++|++|- .|..+...+|-+|.++..++
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~ 106 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQS 106 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccc
Confidence 344678899999999999999876 433 457889999995 45555556888887643322
Q ss_pred ------hHHH------HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHH-------HHHHHHHHhcCCChhHHHHH
Q 002900 138 ------LLTQ------IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKR-------WSNEVQEAVQSRAALVQFHA 198 (869)
Q Consensus 138 ------~~~~------l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~-------~~~~l~~~l~d~~~~v~~~a 198 (869)
+++. -++.+..+|...+-|||-.|+-++--|....|+.+++ -++.+.++|.|+...+.-.|
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRnea 186 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHH
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHH
Confidence 1111 2556677788899999999999999988888875542 45778889998888888889
Q ss_pred HHHHHHHhhcChhHHHHHHH
Q 002900 199 LALLHQIRQNDRLAVSKLVT 218 (869)
Q Consensus 199 l~ll~~i~~~d~~~~~~li~ 218 (869)
+.+|.++.+++ ..+.|++.
T Consensus 187 llLL~~Lt~~n-~~iQklVA 205 (651)
T 3grl_A 187 VLLLQALTRSN-GAIQKIVA 205 (651)
T ss_dssp HHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHhcCC-HHHHHHHH
Confidence 99999998775 45666654
No 86
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.85 E-value=3.6 Score=51.18 Aligned_cols=107 Identities=17% Similarity=0.077 Sum_probs=78.0
Q ss_pred chhHhhhhHHHhhcCC--CCHHHHhHHHHHhccCC---Ch----hhHHHHHHHHHHHhc-----CCChHHHHHHHHHHhh
Q 002900 102 DEVIIVTSSLMKDMTS--KTDMYRANAIRVLCRIT---DG----TLLTQIERYLKQAIV-----DKNPVVASAALVSGIH 167 (869)
Q Consensus 102 d~~~Lvinsl~kDl~s--~n~~vr~lALr~L~~I~---~~----~~~~~l~~~i~~~l~-----d~~p~VRk~A~lal~~ 167 (869)
+..-...+.+.+-+.+ ++...|=.|+=++|.|. .+ ..++.+++.+.+++. |.++.||..++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 4444566677666654 56777766666666654 22 245677778877776 3668899999899886
Q ss_pred hc---ccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 168 LL---QTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 168 L~---~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
.. ..+|+.++..++.+.+.+.+++|.|+.+|...+..++..
T Consensus 527 y~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 43 468898888999998988888899999998888888753
No 87
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.31 E-value=0.013 Score=60.45 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=109.0
Q ss_pred cCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhH
Q 002900 115 MTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALV 194 (869)
Q Consensus 115 l~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v 194 (869)
+.|+++.+|..|.+.+. + ..+.+++.|.++.||..|+..+. ++ .+..++.|.++.|
T Consensus 59 l~d~~~~VR~~AA~~l~----~-------~~l~~L~~D~~~~VR~~aA~~L~------~~-------~L~~ll~D~d~~V 114 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP----V-------EALTPLIRDSDEVVRRAVAYRLP------RE-------QLSALMFDEDREV 114 (244)
T ss_dssp TTCSSHHHHHHHHTTSC----G-------GGGGGGTTCSSHHHHHHHHTTSC------SG-------GGGGTTTCSCHHH
T ss_pred hcCCCHHHHHHHHHhCC----H-------HHHHHHccCcCHHHHHHHHHHCC------HH-------HHHHHHcCCCHHH
Confidence 47889999988888763 2 13667778999999999886521 22 2446677888888
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHH
Q 002900 195 QFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEA 274 (869)
Q Consensus 195 ~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea 274 (869)
.+.+..-+ . .. ++..+.. .++++......+. + .+ +.+..++++.+..|..++
T Consensus 115 R~~aA~~l---~---~~----~L~~L~~--D~d~~VR~~aA~~---l------~~-------~~l~~l~~D~d~~VR~~a 166 (244)
T 1lrv_A 115 RITVADRL---P---LE----QLEQMAA--DRDYLVRAYVVQR---I------PP-------GRLFRFMRDEDRQVRKLV 166 (244)
T ss_dssp HHHHHHHS---C---TG----GGGGGTT--CSSHHHHHHHHHH---S------CG-------GGGGGTTTCSCHHHHHHH
T ss_pred HHHHHHhC---C---HH----HHHHHHc--CCCHHHHHHHHHh---c------CH-------HHHHHHHcCCCHHHHHHH
Confidence 87765532 1 11 1222211 3445444443331 1 01 134456677788888888
Q ss_pred HHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc----ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHH
Q 002900 275 ARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK----SLISDQNRSIATLAITTLLKTGNESSVDRLMKQ 350 (869)
Q Consensus 275 ~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~----~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~e 350 (869)
+.. + +.. .|..++.++++.+|..+...+.. .++.|++..||..+..-+ + ...
T Consensus 167 a~~---l---~~~-------ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l---~--------~~~ 222 (244)
T 1lrv_A 167 AKR---L---PEE-------SLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA---S--------LEA 222 (244)
T ss_dssp HHH---S---CGG-------GGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS---C--------HHH
T ss_pred HHc---C---CHH-------HHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC---C--------HHH
Confidence 776 2 121 23356777888888888877655 567888888888877764 2 123
Q ss_pred HHHhhhhccHHHHHHHHHHHH
Q 002900 351 ITNFMSDIADEFKIVVVEAIR 371 (869)
Q Consensus 351 L~~y~~~~~~~~r~~~v~aI~ 371 (869)
|... .+.+...|..+..++|
T Consensus 223 L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 223 LREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHc-cCCCHHHHHHHHHHhC
Confidence 3333 5666667776665543
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.18 E-value=6.8 Score=48.23 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=36.3
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHh----cCCChHHHHHHHHHHhhhccc
Q 002900 125 NAIRVLCRITDGTLLTQIERYLKQAI----VDKNPVVASAALVSGIHLLQT 171 (869)
Q Consensus 125 lALr~L~~I~~~~~~~~l~~~i~~~l----~d~~p~VRk~A~lal~~L~~~ 171 (869)
-.|+.++.+...++.+.+.+.+.+.+ .+.++..|-+|+.|+..+...
T Consensus 429 ~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~ 479 (963)
T 2x19_B 429 DTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 (963)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhh
Confidence 35677777777788888888888888 667788888888888877653
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.04 E-value=3.2 Score=51.38 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=50.7
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHHhcC-----CChHHHHHHHHHHhhhcccChH----HHHHHHHHHHHHh-cCCChh
Q 002900 124 ANAIRVLCRITDGTLLTQIERYLKQAIVD-----KNPVVASAALVSGIHLLQTTPE----IVKRWSNEVQEAV-QSRAAL 193 (869)
Q Consensus 124 ~lALr~L~~I~~~~~~~~l~~~i~~~l~d-----~~p~VRk~A~lal~~L~~~~pe----~v~~~~~~l~~~l-~d~~~~ 193 (869)
+-+|+.++.+....+.+.+.+.+.+.+.+ .++..|.+|++|+..+.+.-++ .+..+++.+..+. .|.+|.
T Consensus 442 ~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~ 521 (971)
T 2x1g_F 442 SDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVK 521 (971)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHH
Confidence 44678888888888999999999888865 6788899999998887754332 2233444222222 133555
Q ss_pred HHHHHHHHHH
Q 002900 194 VQFHALALLH 203 (869)
Q Consensus 194 v~~~al~ll~ 203 (869)
|...|+-++.
T Consensus 522 vr~~a~~~l~ 531 (971)
T 2x1g_F 522 LLGTALETMG 531 (971)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 90
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.01 E-value=0.57 Score=50.94 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhhccCChh--hHHH------HHHHHHHhhhhccHHHHHHHHHHHHHHHhh-CCccHHH-----HHHHHHH
Q 002900 325 RSIATLAITTLLKTGNES--SVDR------LMKQITNFMSDIADEFKIVVVEAIRSLCLK-FPLKYRS-----LMNFLSN 390 (869)
Q Consensus 325 ~sI~~~aL~lL~~l~~e~--nv~~------Il~eL~~y~~~~~~~~r~~~v~aI~~la~k-~~~~~~~-----~v~~ll~ 390 (869)
..+++.|...|..++..+ +-.. .+..|...+...+.+.+..++.+++.|+.. .+..... .+..|++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 445555555555554222 2111 233444455555666777777777777653 1211112 2445666
Q ss_pred HHhhcCCcchHHHHHHHHHHHHHhCCchH------HHHHHHHHHhhhccCch---hHHHHHHhhhcCCCC---CCCChH-
Q 002900 391 ILREEGGFEYKKAIVDSIVILIRDIPDAK------ENGLLHLCEFIEDCEFT---YLSTQILHFLGTEGP---KTSDPS- 457 (869)
Q Consensus 391 ll~~~g~~~~~~~iv~~i~~ii~~~p~~~------~~~l~~L~~~l~~~~~~---~~~~~~l~ilGE~~~---~~~~~~- 457 (869)
+|...++..+.+.+...+..+....++.+ ..++..|.+.+.+.... +++..++|.|..-+. ..++-.
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 54433444455555555555544232222 23455666666543222 344444554433221 000000
Q ss_pred -----HHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 002900 458 -----KYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPR-----VFVLLRRCLYDGDDEVRDRATLYLNTVGS 524 (869)
Q Consensus 458 -----~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~-----i~~ll~~~~~d~d~evrdRA~~yl~ll~~ 524 (869)
..+..+...+...+..+|..+..++..++...++.+.. ....|-..+.+.+.++|..|...+.-|..
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 12334444444456778888888888887654433222 34555566778889999998875544433
No 91
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.66 E-value=4.4 Score=44.21 Aligned_cols=153 Identities=12% Similarity=0.059 Sum_probs=103.4
Q ss_pred cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC---CChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHH
Q 002900 101 ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVK 177 (869)
Q Consensus 101 ~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I---~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~ 177 (869)
.+.+.=..|.-.. .+++ .+...|+-+-.+ .+|++.+.+.+.|.....|++..|||..+-=+...+...++.+.
T Consensus 24 ~~~v~~lln~A~~---~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~ 99 (386)
T 3o2t_A 24 SERVVDLLNQAAL---ITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL 99 (386)
T ss_dssp HHHHHHHHHHHHH---CCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHhhhc---cChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554 2232 466666666654 67889999999999999999999999999888888888999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHH
Q 002900 178 RWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYD 257 (869)
Q Consensus 178 ~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~ 257 (869)
..++.+..+++|.|+.|+-.++.....+- |.++.+++..= ...+..-.+|..+..+ -+
T Consensus 100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~-----~~~~~~e~~W~~m~~l--------------K~ 157 (386)
T 3o2t_A 100 KLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSR-----VISELQEACWDMVSAM--------------AG 157 (386)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC------CCCHHHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCC-----CcchhHHHHHHHHHHH--------------HH
Confidence 99999999999999999888876654443 24555555321 1111112233333321 12
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 002900 258 FLESCLRHKAEMVIFEAARAIT 279 (869)
Q Consensus 258 ~l~~~L~~~~~aV~~ea~~~i~ 279 (869)
.+...+.+.|..|...|++.+-
T Consensus 158 ~Il~~~ds~n~GVrl~aiKFle 179 (386)
T 3o2t_A 158 DIILLLDSDNDGIRTHAIKFVE 179 (386)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcchHHHHHHHHH
Confidence 3444567788888888888763
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.33 E-value=5.5 Score=40.96 Aligned_cols=136 Identities=10% Similarity=0.013 Sum_probs=95.2
Q ss_pred HHhHHHHHhcc---CCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHH
Q 002900 122 YRANAIRVLCR---ITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHA 198 (869)
Q Consensus 122 vr~lALr~L~~---I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~a 198 (869)
.+...|+-+-. -.+|++.+.+.+.+.....|++..|||-.+-=+...+...++++.+.++.+..+++|.|+.|+-.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 55555554443 347889999999999988899999999988888888889999999999999999999999998888
Q ss_pred HHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHH
Q 002900 199 LALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAI 278 (869)
Q Consensus 199 l~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i 278 (869)
+.....+-+ ..+.+++..= ....|. -.+|..+..+ -+.+...+.+.+.+|...|++.+
T Consensus 111 I~~~~~iY~---~~l~~i~~~~----~~~~~~-~~~W~~m~~l--------------K~~Il~~~~s~n~gvkl~~iKF~ 168 (257)
T 3gs3_A 111 IQACGSIYK---NGLQYLCSLM----EPGDSA-EQAWNILSLI--------------KAQILDMIDNENDGIRTNAIKFL 168 (257)
T ss_dssp HHHHHHHHH---HHHHHHTTSS----SCCHHH-HHHHHHHHHH--------------HHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHhcCC----CCcchH-HHHHHHHHHH--------------HHHHHHHHccCCcchHHHHHHHH
Confidence 776554443 4555555311 111222 2233333321 12344456778888888888876
Q ss_pred H
Q 002900 279 T 279 (869)
Q Consensus 279 ~ 279 (869)
-
T Consensus 169 e 169 (257)
T 3gs3_A 169 E 169 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.26 E-value=0.88 Score=56.48 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=67.8
Q ss_pred CCCHHHHhHHHHHhccCCCh------------hhHHHHHHHHHHHhc-----CCChHHHHHHHHHHhhhc---ccChHHH
Q 002900 117 SKTDMYRANAIRVLCRITDG------------TLLTQIERYLKQAIV-----DKNPVVASAALVSGIHLL---QTTPEIV 176 (869)
Q Consensus 117 s~n~~vr~lALr~L~~I~~~------------~~~~~l~~~i~~~l~-----d~~p~VRk~A~lal~~L~---~~~pe~v 176 (869)
+.+...+=.||.+|+.++.. ...+.+.+.+.+.+. +.+|.||..++..+.|.. ..+|+.+
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l 533 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAI 533 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTH
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 34567788888887765442 224456666666655 889999999999998754 4578888
Q ss_pred HHHHHHHHH--HhcCCChhHHHHHHHHHHHHhhc
Q 002900 177 KRWSNEVQE--AVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 177 ~~~~~~l~~--~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
...++.+.+ .+.++++.|+.+|..++..+++.
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 777777777 66677888999998888777754
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.58 Score=48.79 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=76.5
Q ss_pred HHHHhcCCChHHHHHHHHHHhhhcccChHHHH---------HHHHHHHHHhcCCChhHHHHHHHHHHHHhhcCh------
Q 002900 146 LKQAIVDKNPVVASAALVSGIHLLQTTPEIVK---------RWSNEVQEAVQSRAALVQFHALALLHQIRQNDR------ 210 (869)
Q Consensus 146 i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~---------~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~------ 210 (869)
+...|.|++.-.|+.|+-.+.+++...+.... .....+...+.|.|..|+..|+.++..+...-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45678999999999999999988865543221 233456677889999999999988877654211
Q ss_pred h----HHHHHHHhhc-c--CCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 211 L----AVSKLVTSLT-R--GTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 211 ~----~~~~li~~l~-~--~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
. .+..+++.+. + + ...+-..-..+..+..++.. ......+++.+...+.++|+-|.-+|+..+..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~----~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGL----DTSITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHT----SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 0 0112222221 1 1 11222222223333222211 122345667777788888888888888887644
No 95
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.89 E-value=16 Score=44.78 Aligned_cols=228 Identities=16% Similarity=0.201 Sum_probs=138.7
Q ss_pred hhhhHHHhhcCCCCH-HHHhHHHHHhccCCC--hhhHH---HHHHHHHHHhcCCChHHHHHHHHHHhhhcc-cChHHHHH
Q 002900 106 IVTSSLMKDMTSKTD-MYRANAIRVLCRITD--GTLLT---QIERYLKQAIVDKNPVVASAALVSGIHLLQ-TTPEIVKR 178 (869)
Q Consensus 106 Lvinsl~kDl~s~n~-~vr~lALr~L~~I~~--~~~~~---~l~~~i~~~l~d~~p~VRk~A~lal~~L~~-~~pe~v~~ 178 (869)
=+...+.|-+.+++. .--++++..||..-. +.+-+ .+.+.+..++.|+.+-||++|-.|+.-++. .+|+.++.
T Consensus 54 ~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~ 133 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKA 133 (986)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 355666777766533 333556666664322 12222 246888888899999999998887777665 37788888
Q ss_pred HHHHHHHHhcCCC-hhHHHHHHHHHHHHhhcChhHHH----HHHHhhc---cCCCCChhHH--HHHHHHHHHhhhhhcCC
Q 002900 179 WSNEVQEAVQSRA-ALVQFHALALLHQIRQNDRLAVS----KLVTSLT---RGTVRSPLAQ--CLLIRYTTQVIREAATT 248 (869)
Q Consensus 179 ~~~~l~~~l~d~~-~~v~~~al~ll~~i~~~d~~~~~----~li~~l~---~~~~~~~~~~--v~llr~l~~~~~~~~~d 248 (869)
+++.+.+.+.+.. =..-..|+.++..+...-+..+. .+++-++ ++ ....... ...+..++.+ .+
T Consensus 134 ~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~-----~~ 207 (986)
T 2iw3_A 134 LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATET-----VD 207 (986)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGG-----CC
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhc-----CC
Confidence 8888888885542 35666777777777654444443 3444332 33 2222211 1333333322 24
Q ss_pred CCCchhhHHHHHHHHhcCChHHHHHHHHHHHhcc---CCChHhHhhHHHHHHHHHcCCCchhH---HHHHHHhcc-----
Q 002900 249 QTGDRPFYDFLESCLRHKAEMVIFEAARAITELN---GVTNRELTPAITVLQLFLSSSKPVLR---FAAVRTLNK----- 317 (869)
Q Consensus 249 p~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~---~~~~~~~~~a~~~L~~~L~s~~~n~r---y~aL~~l~~----- 317 (869)
-.+.+.+++.|..++.+.+. +=||++.+...+ ......++-.+.+|.+=|..+.+.++ -+.+++|.+
T Consensus 208 n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~ 285 (986)
T 2iw3_A 208 NKDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDP 285 (986)
T ss_dssp CTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCH
T ss_pred CcchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCH
Confidence 45678889999999988754 888888886553 23334455566777777777666553 223455555
Q ss_pred --------ccC--------CCCC---HHHHHHHHHHhhccCCh
Q 002900 318 --------SLI--------SDQN---RSIATLAITTLLKTGNE 341 (869)
Q Consensus 318 --------~~L--------~d~d---~sI~~~aL~lL~~l~~e 341 (869)
.++ .-+| +.+..+|+++|.+.++.
T Consensus 286 ~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 286 QVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 111 2233 56679999999877554
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.48 Score=49.43 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHhcCCCC-Cccc----hhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-------c----chhHhh
Q 002900 44 RRCSQVITKLLYLLNQGETF-TKIE----ATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-------A----DEVIIV 107 (869)
Q Consensus 44 ~k~~~~l~kli~l~~~G~~~-~~~e----~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-------~----d~~~Lv 107 (869)
+.+.+++..+.-++.....- +.-+ ...+...+-+.+..+|...-..+.-++..++.. . ..+-.+
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTW 103 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Confidence 34466677777666543210 0001 112233445667778887777776666655432 0 112334
Q ss_pred hhHHH-hhcCCCCHHHHhHHHHHhccCCChh-hHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccC------hH-HHHH
Q 002900 108 TSSLM-KDMTSKTDMYRANAIRVLCRITDGT-LLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTT------PE-IVKR 178 (869)
Q Consensus 108 insl~-kDl~s~n~~vr~lALr~L~~I~~~~-~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~------pe-~v~~ 178 (869)
+..|. |=+.++.+.+|..|+.++..+.... ..+.+...+..++.+++|-||..++..+.+++..+ |. .++.
T Consensus 104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~ 183 (278)
T 4ffb_C 104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE 183 (278)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHH
Confidence 44444 6688999999999888876653222 23556777888899999999999999998876531 22 3445
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 179 WSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 179 ~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
++..+..+++|+|+.|.-+|..++.++-..
T Consensus 184 i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 184 LLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 667778889999999999999998888654
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.31 E-value=21 Score=44.29 Aligned_cols=122 Identities=8% Similarity=0.043 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHHhCCch-HH----HHHHHHHHhhhcc--CchhHH--HHHHhhhcCCCCCCCChHHHH----HHH
Q 002900 397 GFEYKKAIVDSIVILIRDIPDA-KE----NGLLHLCEFIEDC--EFTYLS--TQILHFLGTEGPKTSDPSKYI----RYI 463 (869)
Q Consensus 397 ~~~~~~~iv~~i~~ii~~~p~~-~~----~~l~~L~~~l~~~--~~~~~~--~~~l~ilGE~~~~~~~~~~~l----~~i 463 (869)
+....++.+-++..|...-.+- .. .++..|+...+.- .++++. ..++|++|.|+......++++ ..+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L 545 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445566666777766543322 22 3444444444321 124443 347799999988654434444 555
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhccccC-c-----------hHHHHHHHHHhhcCCCHHHHHHHHHH
Q 002900 464 YNRVHLENATVRAAAVSTLAKFGAMVDA-L-----------KPRVFVLLRRCLYDGDDEVRDRATLY 518 (869)
Q Consensus 464 ~~~~~~e~~~vr~~~ltal~Kl~~~~~~-l-----------~~~i~~ll~~~~~d~d~evrdRA~~y 518 (869)
++.+...++.|+.++..|+.+++..|.. + -+.+...+..+..+.+.+-+.++++-
T Consensus 546 ~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyea 612 (1023)
T 4hat_C 546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKA 612 (1023)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5555556788999999999999987641 1 23344444455555555555555543
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.34 E-value=28 Score=43.37 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=70.8
Q ss_pred hhhhHHHhhcCCCC--HHHH---hHHHHHhccCCCh----hhHHHHHHHHHHHhcCC-----ChHHHHHHHHHHhh---h
Q 002900 106 IVTSSLMKDMTSKT--DMYR---ANAIRVLCRITDG----TLLTQIERYLKQAIVDK-----NPVVASAALVSGIH---L 168 (869)
Q Consensus 106 Lvinsl~kDl~s~n--~~vr---~lALr~L~~I~~~----~~~~~l~~~i~~~l~d~-----~p~VRk~A~lal~~---L 168 (869)
+....+.+-+.+++ ...+ +.|+++++.-..+ ..++.+++.+.++..++ .+.||......+.+ -
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 34455555544433 3333 7788888443333 46778888888777665 35666666556654 3
Q ss_pred cccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 169 LQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 169 ~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
...+|+.++..++.+.+.+.+.++.|+.+|...+..|+..
T Consensus 557 l~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 557 LRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4468999998999999999999999999998888777754
No 99
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.47 E-value=1.2 Score=55.62 Aligned_cols=125 Identities=11% Similarity=0.106 Sum_probs=88.2
Q ss_pred CCccchhHHHHHHHHhCC----C----c-chhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHH---
Q 002900 82 RDIGLRRMVYLMIKELSP----S----A-DEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQA--- 149 (869)
Q Consensus 82 ~d~~lKrl~Yl~l~~~~~----~----~-d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~--- 149 (869)
++..+|+.++|++..+.. . + +.+--+.+.+.+-+...++.-+-++|++|||++.|+.++.+.+.+...
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~ 486 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKS 486 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSC
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccc
Confidence 456678888888765543 1 2 335556666777777778899999999999999999888777765321
Q ss_pred hcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhh
Q 002900 150 IVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQ 207 (869)
Q Consensus 150 l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~ 207 (869)
-.+....||..|+.|+-++....|+.++..+-.+..= ...++.+...|+.+|...++
T Consensus 487 ~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n-~~e~~EvRiaA~~~Lm~t~P 543 (1056)
T 1lsh_A 487 LDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLN-VAIKSELRIRSCIVFFESKP 543 (1056)
T ss_dssp CCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTCC
T ss_pred ccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHCc
Confidence 1223568999999999999988999888655443320 23466788888777655443
No 100
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.37 E-value=5.1 Score=44.56 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=89.1
Q ss_pred cCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHH
Q 002900 395 EGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATV 474 (869)
Q Consensus 395 ~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~v 474 (869)
.|+-..|.-+...|-..++..|++++.++..+++..|| ++..++..++.-|...+-. +...++...+..-+..|.+..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCED-EDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHhccchHH
Confidence 56666777788888999999999999999999999998 5566777666666665554 677788777777777777776
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 002900 475 RAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYL 519 (869)
Q Consensus 475 r~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl 519 (869)
..+.=.++.-++-..| ...+..+|..... .|..+|+|+.-++
T Consensus 117 ~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~-~~e~~Rer~lkFi 158 (507)
T 3u0r_A 117 FNLVNNALLSIFKMDA--KGTLGGLFSQILQ-GEDIVRERAIKFL 158 (507)
T ss_dssp HHHHHHHHHHHHHHCH--HHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCh--HHHHHHHHHHHcc-cchHHHHHHHHHH
Confidence 6666666666655444 4456666666665 3689999988654
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.26 E-value=0.86 Score=46.38 Aligned_cols=104 Identities=12% Similarity=0.003 Sum_probs=77.1
Q ss_pred HhhhhHHHhhcCCCCH--HHHhHHHHHhccCC--Chh----hHH-HHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHH
Q 002900 105 IIVTSSLMKDMTSKTD--MYRANAIRVLCRIT--DGT----LLT-QIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEI 175 (869)
Q Consensus 105 ~Lvinsl~kDl~s~n~--~vr~lALr~L~~I~--~~~----~~~-~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~ 175 (869)
-|.+..+.+-|.++++ .++..|..+|.++. +++ +++ -.++.+.+.|.+.++.|+..|+-++..|...+++-
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3556667778888887 77777777776654 222 222 14788999999999999999999999998766642
Q ss_pred ---HH--HHHHHHHHHhc-CCChhHHHHHHHHHHHHhhc
Q 002900 176 ---VK--RWSNEVQEAVQ-SRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 176 ---v~--~~~~~l~~~l~-d~~~~v~~~al~ll~~i~~~ 208 (869)
+. .-++.+.++|. ..+..++-+|.++|+.+...
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 22 36677788886 46889999999999988765
No 102
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.24 E-value=22 Score=39.66 Aligned_cols=120 Identities=11% Similarity=0.122 Sum_probs=91.0
Q ss_pred cCCCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHH
Q 002900 80 QSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVA 158 (869)
Q Consensus 80 ~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VR 158 (869)
...+...|||.--++..|... |++.--++|++..=+.|.+..||-.|+|.|..++..+.+.-+...+.|+|....+..+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~ 117 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEF 117 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHH
Confidence 345689999999999998876 9999999999999999999999999999999999889999999999999997776655
Q ss_pred HHHHHHHhhhcccChH-HHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002900 159 SAALVSGIHLLQTTPE-IVKRWSNEVQEAVQSRAALVQFHALALLH 203 (869)
Q Consensus 159 k~A~lal~~L~~~~pe-~v~~~~~~l~~~l~d~~~~v~~~al~ll~ 203 (869)
...=-++..+++.+|. .+..++..+.. .+..+.-.++..|.
T Consensus 118 ~~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 118 NLVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHH
Confidence 4433344444444554 34455555544 24555555555543
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.00 E-value=15 Score=45.66 Aligned_cols=220 Identities=10% Similarity=0.073 Sum_probs=112.2
Q ss_pred CCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHH
Q 002900 249 QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIA 328 (869)
Q Consensus 249 p~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~ 328 (869)
|.....+.+++...+.. ++.+.-+|-..+-.+...+ .....+...| -++.++++|+.|+..+.. .|+
T Consensus 12 ~~~~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p-~~~~~l~~iL---~~s~~~~vr~~aa~~Lk~--------~i~ 78 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNP-DAWQKADQIL---QFSTNPQSKFIALSILDK--------LIT 78 (1049)
T ss_dssp CCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHST-TGGGGHHHHH---HHCSCHHHHHHHHHHHHH--------HHH
T ss_pred cccHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCc-hHHHHHHHHH---hhCCCHHHHHHHHHHHHH--------HHH
Confidence 44444555555554433 3445555555555553322 2222222222 235677888888776632 011
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhhhhc---------cHHHHHHHHHHHHHHHhh-CCccHHHHHHHHHHHHhhcCCc
Q 002900 329 TLAITTLLKTGNESSVDRLMKQITNFMSDI---------ADEFKIVVVEAIRSLCLK-FPLKYRSLMNFLSNILREEGGF 398 (869)
Q Consensus 329 ~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~---------~~~~r~~~v~aI~~la~k-~~~~~~~~v~~ll~ll~~~g~~ 398 (869)
--....+++.-..|-+.|..++... +..+|..+...|+.++.+ ||..+..+++.++..++ . +.
T Consensus 79 -----~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~-~~ 151 (1049)
T 3m1i_C 79 -----RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-S-SV 151 (1049)
T ss_dssp -----HTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-T-CH
T ss_pred -----hhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-c-Ch
Confidence 1112234444455555555554332 246788899999999887 78778888888888875 2 21
Q ss_pred chHHHHHHHHHHHH---HhC-Cc-------------hHH---HHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCCh--
Q 002900 399 EYKKAIVDSIVILI---RDI-PD-------------AKE---NGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP-- 456 (869)
Q Consensus 399 ~~~~~iv~~i~~ii---~~~-p~-------------~~~---~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~-- 456 (869)
...+.....+..+. ... ++ ++. .++..+...+++...+++...++-.++.+....+-+
T Consensus 152 ~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~ 231 (1049)
T 3m1i_C 152 NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYI 231 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHH
Confidence 12222232333222 111 10 111 122333344444344445554555554443333211
Q ss_pred --HHHHHHHHhhccCCCHHHHHHHHHHHHHHhccc
Q 002900 457 --SKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV 489 (869)
Q Consensus 457 --~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~ 489 (869)
..++..+++.+. .++.+|..++.++..+..+.
T Consensus 232 ~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 232 YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCC
Confidence 124455554443 37889999999998887763
No 104
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=90.59 E-value=0.27 Score=50.50 Aligned_cols=180 Identities=14% Similarity=0.065 Sum_probs=115.7
Q ss_pred HhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChH
Q 002900 77 KLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPV 156 (869)
Q Consensus 77 kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~ 156 (869)
.++.++++..|+..--.+ ....+.+-++|+++.+|..|...|+. ..+..++.|+++.
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------~~~~l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ll~D~d~~ 113 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------PVEALTPLIRDSDEVVRRAVAYRLPR-----------EQLSALMFDEDRE 113 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------CGGGGGGGTTCSSHHHHHHHHTTSCS-----------GGGGGTTTCSCHH
T ss_pred HHhcCCCHHHHHHHHHhC------------CHHHHHHHccCcCHHHHHHHHHHCCH-----------HHHHHHHcCCCHH
Confidence 345677777776554432 13346677899999999999987642 3467778999999
Q ss_pred HHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHH
Q 002900 157 VASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIR 236 (869)
Q Consensus 157 VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr 236 (869)
||..|+..+ .++. +..++.|.++.|...+..- +. +. ++..+.. ..++..-....+
T Consensus 114 VR~~aA~~l------~~~~-------L~~L~~D~d~~VR~~aA~~---l~---~~----~l~~l~~--D~d~~VR~~aa~ 168 (244)
T 1lrv_A 114 VRITVADRL------PLEQ-------LEQMAADRDYLVRAYVVQR---IP---PG----RLFRFMR--DEDRQVRKLVAK 168 (244)
T ss_dssp HHHHHHHHS------CTGG-------GGGGTTCSSHHHHHHHHHH---SC---GG----GGGGTTT--CSCHHHHHHHHH
T ss_pred HHHHHHHhC------CHHH-------HHHHHcCCCHHHHHHHHHh---cC---HH----HHHHHHc--CCCHHHHHHHHH
Confidence 999988853 2222 3456788888898887652 11 11 2222222 234433222222
Q ss_pred HHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhc
Q 002900 237 YTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLN 316 (869)
Q Consensus 237 ~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~ 316 (869)
- . + -+.+..++++.+.-|..+++..+ +. ..|..++.+++..+|..+...+.
T Consensus 169 ~---l-------~------~~ll~~ll~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 169 R---L-------P------EESLGLMTQDPEPEVRRIVASRL------RG-------DDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp H---S-------C------GGGGGGSTTCSSHHHHHHHHHHC------CG-------GGGGGGGGCSSHHHHHHHHHHSC
T ss_pred c---C-------C------HHHHHHHHcCCCHHHHHHHHHhC------CH-------HHHHHHHcCCCHHHHHHHHHcCC
Confidence 1 1 1 02455667888889999998763 12 23556688888999999888876
Q ss_pred c----ccCCCCCHHHHHHHHHH
Q 002900 317 K----SLISDQNRSIATLAITT 334 (869)
Q Consensus 317 ~----~~L~d~d~sI~~~aL~l 334 (869)
. .+ +|++..||..+..-
T Consensus 220 ~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 220 LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp HHHHHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHc-cCCCHHHHHHHHHH
Confidence 6 55 89999998877653
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.87 E-value=4.5 Score=41.80 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=75.5
Q ss_pred CCCCCHHHHHHHHHHhhccC----------ChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHH
Q 002900 320 ISDQNRSIATLAITTLLKTG----------NESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLS 389 (869)
Q Consensus 320 L~d~d~sI~~~aL~lL~~l~----------~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll 389 (869)
+.|+|..+-.++|++|-.+. ++..+..++..|..=+.+..+.+|..+-..+..++.-||+. .+++.++
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--~v~~~l~ 173 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--KMTPMLL 173 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--HHHHHHH
Confidence 34778888888888775541 23334455555555556666677776666666666555443 3445555
Q ss_pred HHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHH---HHHHhh
Q 002900 390 NILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYI---RYIYNR 466 (869)
Q Consensus 390 ~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l---~~i~~~ 466 (869)
+-+++. +.-.+.++.+.+.. ++.+||.. |..++ ..+.+.
T Consensus 174 ~g~ksK-N~R~R~e~l~~l~~----------------------------------li~~~G~~---~~~~l~~~~~ia~l 215 (266)
T 2of3_A 174 DALKSK-NARQRSECLLVIEY----------------------------------YITNAGIS---PLKSLSVEKTVAPF 215 (266)
T ss_dssp HGGGCS-CHHHHHHHHHHHHH----------------------------------HHHHHCSG---GGGGGCHHHHHGGG
T ss_pred HHHccC-CHHHHHHHHHHHHH----------------------------------HHHhcCCC---ccccccchHHHHHH
Confidence 544322 22223333333332 33334332 34455 667776
Q ss_pred ccCCCHHHHHHHHHHHHHHhccc
Q 002900 467 VHLENATVRAAAVSTLAKFGAMV 489 (869)
Q Consensus 467 ~~~e~~~vr~~~ltal~Kl~~~~ 489 (869)
+..-+..||.++++++.-+|...
T Consensus 216 l~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 216 VGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHh
Confidence 77778899999999999887754
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.27 E-value=0.49 Score=49.09 Aligned_cols=177 Identities=14% Similarity=0.090 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCcc-chhhhhHH-HHHhhcCCCccchhHHHHHHHHhCC--------C-cchhHhhhhH
Q 002900 42 DPRRCSQVITKLLYLLNQGETFTKI-EATEVFFA-VTKLFQSRDIGLRRMVYLMIKELSP--------S-ADEVIIVTSS 110 (869)
Q Consensus 42 ~~~k~~~~l~kli~l~~~G~~~~~~-e~s~lf~~-v~kl~~s~d~~lKrl~Yl~l~~~~~--------~-~d~~~Lvins 110 (869)
+.+...+++..|.-......+ .. ...+++|. ++--+-++|+.+=.-|.=++..+.. . ..++-..+-.
T Consensus 59 d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~ 136 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY 136 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 455556667777776654320 00 01122222 2212235566655555444444321 1 2345566677
Q ss_pred HHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHH---HHHHHHh
Q 002900 111 LMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS---NEVQEAV 187 (869)
Q Consensus 111 l~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~---~~l~~~l 187 (869)
|.-=+-|+.+.+|-.+-..+-.+..---...+.+++.+++.|+|+.+|--.+..+..+...+.-.-...+ +.+..++
T Consensus 137 LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll 216 (266)
T 2of3_A 137 LLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFV 216 (266)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHH
Confidence 7777789999898776554433321112234677788899999999999998888877653211112456 8889999
Q ss_pred cCCChhHHHHHHHHHHHHhhcChhHHHHHHHhh
Q 002900 188 QSRAALVQFHALALLHQIRQNDRLAVSKLVTSL 220 (869)
Q Consensus 188 ~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l 220 (869)
+|+|..|--+|+..+.++-.+-+..+.+.+..+
T Consensus 217 ~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L 249 (266)
T 2of3_A 217 GDKDVNVRNAAINVLVACFKFEGDQMWKAAGRM 249 (266)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Confidence 999999999999999888766555676666443
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.99 E-value=0.96 Score=45.69 Aligned_cols=144 Identities=11% Similarity=0.019 Sum_probs=89.0
Q ss_pred hhhhhHHHHHhhcCCCccchhHHHHHHHHhCCCcchhHhhhhHHHh-hcCCCCHHHHhH---HHHHhccCCChhhHHHHH
Q 002900 68 ATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMK-DMTSKTDMYRAN---AIRVLCRITDGTLLTQIE 143 (869)
Q Consensus 68 ~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~k-Dl~s~n~~vr~l---ALr~L~~I~~~~~~~~l~ 143 (869)
...+......|.+++.++.|=++--.+... ..... +-..++. =-.|++--||=. |++-++.-.+++- +.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~---~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l 141 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE---ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---AL 141 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH---HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---TH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH---HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HH
Confidence 334444445667777776665544444444 22111 2333343 235778777744 4444443234442 33
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhh---h--cccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHH
Q 002900 144 RYLKQAIVDKNPVVASAALVSGIH---L--LQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVT 218 (869)
Q Consensus 144 ~~i~~~l~d~~p~VRk~A~lal~~---L--~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~ 218 (869)
+.+.+.+.|.++.|||.|..+... . ++.+|+.+-. .+..+.+|++--|+-+.-..|.++.+.+|..+...+.
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~---iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIR---RIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHH---HHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHH---HHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 456677799999999999999742 1 2456766544 4445666776677777667799999999999998888
Q ss_pred hhc
Q 002900 219 SLT 221 (869)
Q Consensus 219 ~l~ 221 (869)
.-.
T Consensus 219 ~w~ 221 (240)
T 3l9t_A 219 NWK 221 (240)
T ss_dssp TCC
T ss_pred Hhh
Confidence 643
No 108
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=88.63 E-value=61 Score=40.97 Aligned_cols=122 Identities=8% Similarity=0.062 Sum_probs=70.6
Q ss_pred CCccchhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccC-------CChhhHHHHHHHHHHHhcC--
Q 002900 82 RDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRI-------TDGTLLTQIERYLKQAIVD-- 152 (869)
Q Consensus 82 ~d~~lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I-------~~~~~~~~l~~~i~~~l~d-- 152 (869)
.+...|+-+.-++.++...++....+...|. -.+.++.+|-.|+..|-+. .+++-.+.+-..+.+.+..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~ 102 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGT 102 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSS
T ss_pred CChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhc
Confidence 3666788888888776544544444444443 2567889998888666642 2344455555555555432
Q ss_pred -----CChHHHHHHHHHHhhhccc-ChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 002900 153 -----KNPVVASAALVSGIHLLQT-TPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIR 206 (869)
Q Consensus 153 -----~~p~VRk~A~lal~~L~~~-~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~ 206 (869)
..++||.+.+.++..+.+. .|+-=..+++.+..++.. ++...-.++.+|..+.
T Consensus 103 ~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 103 LNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp CCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 4699999999998877643 232111233334444433 4444444555555554
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=86.92 E-value=51 Score=38.20 Aligned_cols=180 Identities=11% Similarity=0.130 Sum_probs=103.4
Q ss_pred chhhhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhh-hHHHHHhhcCCCcc---------chhHHHHH
Q 002900 24 IEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEV-FFAVTKLFQSRDIG---------LRRMVYLM 93 (869)
Q Consensus 24 ~~k~~~~qe~r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~l-f~~v~kl~~s~d~~---------lKrl~Yl~ 93 (869)
.|+++.+.++|.|...-...- -..+|.-+|..+-...+ ..|+... .--+..++...+.. ...+|--+
T Consensus 37 eDRR~Av~~Lk~~sk~y~~~V-g~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRLEV-GIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTTHH-HHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHh-hhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 478888888888765332221 23347777776665431 1122111 11111223222111 11222222
Q ss_pred HHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCC--hh-hHH------HHHHHHHHHhcCCChHHHHHHHHH
Q 002900 94 IKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITD--GT-LLT------QIERYLKQAIVDKNPVVASAALVS 164 (869)
Q Consensus 94 l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~--~~-~~~------~l~~~i~~~l~d~~p~VRk~A~la 164 (869)
.-.+...++-+-+ |..=|.+.+.++|=.|++.|..+.. ++ .-+ .-++.+...|.|++..+|-.|++.
T Consensus 114 ~d~f~~~~~~i~~----Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 114 TEIFIKQQENVTL----LLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHSTHHHHH----HHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHcCCccHHH----HHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 2111112232333 3334578899999999888876542 22 222 245678888999999999999999
Q ss_pred HhhhcccChHHHH-----HHHHHHHHHhcCCC----hhHHHHHHHHHHHHhhcCh
Q 002900 165 GIHLLQTTPEIVK-----RWSNEVQEAVQSRA----ALVQFHALALLHQIRQNDR 210 (869)
Q Consensus 165 l~~L~~~~pe~v~-----~~~~~l~~~l~d~~----~~v~~~al~ll~~i~~~d~ 210 (869)
+..|.+.++++=+ ..++.+-+++.... ..|+..++.++..+.+.++
T Consensus 190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 190 LQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9999999998643 23556666655433 3788889999988887764
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.75 E-value=8.2 Score=43.78 Aligned_cols=162 Identities=13% Similarity=0.088 Sum_probs=87.0
Q ss_pred hhhHHHhhcCCCCHHHHh---HHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHH
Q 002900 107 VTSSLMKDMTSKTDMYRA---NAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEV 183 (869)
Q Consensus 107 vinsl~kDl~s~n~~vr~---lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l 183 (869)
+...+.+++..+...+|- ++||-+..+... .+.+.+.+..+|.|.+..||..||-++.-+. .|+.+..+++.+
T Consensus 264 IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iL 339 (800)
T 3oc3_A 264 IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKC 339 (800)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHH
T ss_pred HHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHH
Confidence 333444555666666664 445555333222 5666666667777777777777777766665 455555555444
Q ss_pred HHHhcCCCh--hHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHH
Q 002900 184 QEAVQSRAA--LVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLES 261 (869)
Q Consensus 184 ~~~l~d~~~--~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~ 261 (869)
-++|.+-|+ ....+.+.+|..++... .+......+++.|-+
T Consensus 340 Wd~L~~LDDLSASTgSVMdLLAkL~s~p-------------------------------------~~a~~dp~LVPRL~P 382 (800)
T 3oc3_A 340 WKNIESEELISVSKTSNLSLLTKIYREN-------------------------------------PELSIPPERLKDIFP 382 (800)
T ss_dssp HHHHHTCCSCCTTHHHHHHHHHHHHHHC-------------------------------------TTCCCCSGGGGGTGG
T ss_pred HHHhhhhcccchhhHHHHHHHHHHHcCC-------------------------------------cccccChHHHHHHHh
Confidence 444433221 12222222332222221 011111256677888
Q ss_pred HHhcCChHHHHHHHHHHHhccCCChHhHhhHHH-HHHHHHcCCCchhHHHHHHHh
Q 002900 262 CLRHKAEMVIFEAARAITELNGVTNRELTPAIT-VLQLFLSSSKPVLRFAAVRTL 315 (869)
Q Consensus 262 ~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~-~L~~~L~s~~~n~ry~aL~~l 315 (869)
+++|+-.+|...+.+++..+- ... +.. +.|.+|-.++..++=.+++..
T Consensus 383 FLRHtITSVR~AVL~TL~tfL--~~~----~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS--EES----IDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC--CHH----HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH--hhh----HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999999999998774 121 222 234555555556555554443
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=84.77 E-value=26 Score=35.33 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=33.7
Q ss_pred cCCCCCH--HHHHHHHHHhhccC--ChhhHHHH-----HHHHHHhhhhccHHHHHHHHHHHHHHHhh
Q 002900 319 LISDQNR--SIATLAITTLLKTG--NESSVDRL-----MKQITNFMSDIADEFKIVVVEAIRSLCLK 376 (869)
Q Consensus 319 ~L~d~d~--sI~~~aL~lL~~l~--~e~nv~~I-----l~eL~~y~~~~~~~~r~~~v~aI~~la~k 376 (869)
+|+.+|. .++..|...|..++ ++.|-..| +..|...+...+.+.+..++.+++.|+..
T Consensus 16 lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 16 MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4555554 56666666665554 34444433 33455556666667777777777777654
No 112
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=84.70 E-value=47 Score=41.29 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=109.6
Q ss_pred HhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHH-cCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCCh
Q 002900 263 LRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFL-SSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE 341 (869)
Q Consensus 263 L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L-~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e 341 (869)
+.+.++...-+|-..+-.+...+. +...+..+| .+.++.+||.|+..|.. .|++ -....++
T Consensus 37 ly~p~~~~r~qA~~~L~q~q~sp~-----aw~~~~~iL~~s~~~~vR~fAa~~L~~--------~I~~-----~W~~L~~ 98 (1073)
T 3gjx_A 37 LYHGEGAQQRMAQEVLTHLKEHPD-----AWTRVDTILEFSQNMNTKYYGLQILEN--------VIKT-----RWKILPR 98 (1073)
T ss_dssp TTCSSHHHHHHHHHHHHTSSCCSC-----HHHHHTCC---CCSHHHHHHHHHHHHH--------HHHH-----TGGGSCH
T ss_pred HhCCCHHHHHHHHHHHHHHHcCch-----HHHHHHHHhcCCCCHHHHHHHHHHHHH--------HHHh-----hhhhCCH
Confidence 334456666677777767754332 222223333 34577899999887743 0110 0111233
Q ss_pred hhHHHHHHHHHHhhhh---------ccHHHHHHHHHHHHHHHhh-CCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q 002900 342 SSVDRLMKQITNFMSD---------IADEFKIVVVEAIRSLCLK-FPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVIL 411 (869)
Q Consensus 342 ~nv~~Il~eL~~y~~~---------~~~~~r~~~v~aI~~la~k-~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~i 411 (869)
+....|-+.|..|+.. .+..++..+...++.++.+ ||..+..+++.++.++.... .........+..+
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~--~~~~~~L~IL~~L 176 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSE--SLCQNNMVILKLL 176 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCH--HHHHHHHHHHHHH
Confidence 3333333333333321 2345667777777777775 67766666666666654211 1111122222222
Q ss_pred HHhC--------Cch------------HHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCCh----HHHHHHHHhhc
Q 002900 412 IRDI--------PDA------------KENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDP----SKYIRYIYNRV 467 (869)
Q Consensus 412 i~~~--------p~~------------~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~----~~~l~~i~~~~ 467 (869)
.+.. +.. -..++..+.+.++....+++...++-.+|.|...++-. ..++..+.-.+
T Consensus 177 ~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~ 256 (1073)
T 3gjx_A 177 SEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKF 256 (1073)
T ss_dssp HHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHT
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHh
Confidence 2220 000 11233444445555455565555667777776655210 12455553223
Q ss_pred cCCCHHHHHHHHHHHHHHhccc-cCchHHHHHHH
Q 002900 468 HLENATVRAAAVSTLAKFGAMV-DALKPRVFVLL 500 (869)
Q Consensus 468 ~~e~~~vr~~~ltal~Kl~~~~-~~l~~~i~~ll 500 (869)
+.++.+|.+++.++.-+..+. ++..+.+..++
T Consensus 257 -L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf 289 (1073)
T 3gjx_A 257 -LNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLF 289 (1073)
T ss_dssp -SSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 458899999999999887652 33333444444
No 113
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=82.58 E-value=66 Score=35.84 Aligned_cols=67 Identities=7% Similarity=0.006 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhc---------cCchhHHHHHHhhhcCCCCCCCChHHHHHHH------HhhccCCCHHHHHHHHHHHHH
Q 002900 420 ENGLLHLCEFIED---------CEFTYLSTQILHFLGTEGPKTSDPSKYIRYI------YNRVHLENATVRAAAVSTLAK 484 (869)
Q Consensus 420 ~~~l~~L~~~l~~---------~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i------~~~~~~e~~~vr~~~ltal~K 484 (869)
-.+++.|++.+++ ..++...+.+++=+|||....++...++..+ .+-..-+++.||-.+|.|.-|
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3577788888864 2456778888999999987666555444322 222334677777777777776
Q ss_pred Hh
Q 002900 485 FG 486 (869)
Q Consensus 485 l~ 486 (869)
+-
T Consensus 474 lm 475 (480)
T 1ho8_A 474 II 475 (480)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 114
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=80.94 E-value=4.4 Score=35.29 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=39.6
Q ss_pred CcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCceEEEEE
Q 002900 648 RHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAF 703 (869)
Q Consensus 648 ~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~~~~v~~ 703 (869)
..+..++.++|.++ .+|+|..+.++..+- .+. ..+..+.++||+.....+.+
T Consensus 20 ~~l~v~vsf~NPL~-~~L~~c~~~vEG~GL--~~~-~~~~~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 20 QECEVQIVFKNPLP-VTLTNVVFRLEGSGL--QRP-KILNVGDIGGNETVTLRQSF 71 (102)
T ss_dssp SCEEEEEEEECCSS-SCBCSEEEEEEETTT--EEE-EEEEECCBCTTCEEEEEEEE
T ss_pred CeEEEEEEEECCCC-CcccCEEEEEECCCC--Ccc-eEEEcCcCCCCCEEEEEEEE
Confidence 46788899999995 699999999886542 334 55567889999997666655
No 115
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=80.73 E-value=40 Score=38.39 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002900 469 LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLN 520 (869)
Q Consensus 469 ~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ 520 (869)
-.-+.||.+.+.++..+. ..+.+.-+++..+-..+.|||+-+...|+
T Consensus 386 HtITSVR~AVL~TL~tfL-----~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 386 SPVPEVRTSILNMVKNLS-----EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CSSHHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 346889999999988775 45677888999999999999999998886
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=76.71 E-value=24 Score=35.46 Aligned_cols=30 Identities=10% Similarity=-0.114 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHhcCChHHHHHHHHHHHhc
Q 002900 252 DRPFYDFLESCLRHKAEMVIFEAARAITEL 281 (869)
Q Consensus 252 ~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l 281 (869)
.+.++.....+.++....|.+-|+.++..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~ 98 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL 98 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc
Confidence 456777778888888899999999988776
No 117
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=72.90 E-value=6.6 Score=39.65 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=91.1
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCH-HHHhHHHHHhccCC--ChhhHHHHHHHHHHHh
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTD-MYRANAIRVLCRIT--DGTLLTQIERYLKQAI 150 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~-~vr~lALr~L~~I~--~~~~~~~l~~~i~~~l 150 (869)
+-.|+++...+.+-++-.++..+... .+..+-.+..+.. .-.|- .+-++|-++++.+. .|+ .+.+.+.+.+
T Consensus 66 ~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~W~ 140 (232)
T 3jxy_A 66 IRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPKWI 140 (232)
T ss_dssp HHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHHHh
Confidence 45667777667666666666433221 1221112223333 23444 33455544444332 233 1234566677
Q ss_pred cCCChHHHHHHHHHHhhhcc-cChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChh
Q 002900 151 VDKNPVVASAALVSGIHLLQ-TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPL 229 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~-~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~ 229 (869)
.|.++++||.|+.+++..+. .+|+. ++..+...+.|++.-|+-+.--+|-++.+.++..+...+.+- ..++|
T Consensus 141 ~s~~~w~rR~ai~~~l~~~~~~d~~~---~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~~----~l~~~ 213 (232)
T 3jxy_A 141 ASDNIWLQRAAILFQLKYKQKMDEEL---LFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNN----ELAPL 213 (232)
T ss_dssp HSSCHHHHHHHHHTTTTCGGGCCHHH---HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHS----CCCHH
T ss_pred cCCchHHHHHHHHHHHHHHhCCCHHH---HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHC----CCCHH
Confidence 99999999999999876543 45553 334455667777777777766778899999988888877653 25678
Q ss_pred HHHHHHHHHH
Q 002900 230 AQCLLIRYTT 239 (869)
Q Consensus 230 ~~v~llr~l~ 239 (869)
..=..+|.+.
T Consensus 214 ~~r~A~k~l~ 223 (232)
T 3jxy_A 214 SKREAIKHIK 223 (232)
T ss_dssp HHHHHTTTTH
T ss_pred HHHHHHHhcc
Confidence 7666565554
No 118
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=72.77 E-value=7.2 Score=39.02 Aligned_cols=147 Identities=14% Similarity=0.029 Sum_probs=88.2
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCH-HHHhHHHHHhccCC--ChhhHHHHHHHHHHHh
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTD-MYRANAIRVLCRIT--DGTLLTQIERYLKQAI 150 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~-~vr~lALr~L~~I~--~~~~~~~l~~~i~~~l 150 (869)
+..|+++.-++.+-++-+++...... .++.+-.+..+... -.|- .+=++| ++++.+. .++ .+.+.+.+.+
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~ 133 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFY 133 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHT
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHH
Confidence 34567888888887777777544322 22322222333222 3343 333454 5454432 232 1344567778
Q ss_pred cCCChHHHHHHHHHHhhhcc-cChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChh
Q 002900 151 VDKNPVVASAALVSGIHLLQ-TTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPL 229 (869)
Q Consensus 151 ~d~~p~VRk~A~lal~~L~~-~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~ 229 (869)
.|.+.++||.|+.+.+.-.. .+|+.+ +..+...+.|++.-|.-+.--+|-++.+.++..+...+. - + ..++|
T Consensus 134 ~s~~~w~rR~ai~~~l~~~~~~~~~~~---~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl~-~--~-~l~~~ 206 (220)
T 2b6c_A 134 GAENFWNRRVALNLQLMLKEKTNQDLL---KKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELMK-E--L-VLSPL 206 (220)
T ss_dssp TCSSHHHHHHHHHTTTTCGGGCCHHHH---HHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH-H--S-CCCHH
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHh-h--c-cCCHH
Confidence 99999999999998875432 355544 334444677877777777667788999999888777773 2 1 35576
Q ss_pred HHHHH
Q 002900 230 AQCLL 234 (869)
Q Consensus 230 ~~v~l 234 (869)
..=..
T Consensus 207 ~~r~A 211 (220)
T 2b6c_A 207 AQREG 211 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54333
No 119
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=72.38 E-value=16 Score=43.30 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=81.1
Q ss_pred HHHhhcCCCccchhHHHHHHHHhCCCcc-h-hHh----hhhHHHhhcCCCCHHHHhHHHHHhccC---CChhhHHH----
Q 002900 75 VTKLFQSRDIGLRRMVYLMIKELSPSAD-E-VII----VTSSLMKDMTSKTDMYRANAIRVLCRI---TDGTLLTQ---- 141 (869)
Q Consensus 75 v~kl~~s~d~~lKrl~Yl~l~~~~~~~d-~-~~L----vinsl~kDl~s~n~~vr~lALr~L~~I---~~~~~~~~---- 141 (869)
+++.++|.|...|..+-.++++++..+. . .++ +..-|.+=|.|+++.+|..|..+|.++ .+++.+..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 5566899999999999999999987532 2 222 233345668999999998777666665 45665555
Q ss_pred -HHHHHHHHhcCCC-------------hHHHH--------HHHHHHhhhcccChHHHH-----HHHHHHHHHhcCC---C
Q 002900 142 -IERYLKQAIVDKN-------------PVVAS--------AALVSGIHLLQTTPEIVK-----RWSNEVQEAVQSR---A 191 (869)
Q Consensus 142 -l~~~i~~~l~d~~-------------p~VRk--------~A~lal~~L~~~~pe~v~-----~~~~~l~~~l~d~---~ 191 (869)
+.+++..++.... +-.++ .++-++.-|...+.+.+. ..++.+...|.+. .
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~ 198 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAP 198 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSC
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCc
Confidence 4445544442211 11111 122222233333444433 2233333333221 2
Q ss_pred hhHHHHHHHHHHHHhhcChhHHHH
Q 002900 192 ALVQFHALALLHQIRQNDRLAVSK 215 (869)
Q Consensus 192 ~~v~~~al~ll~~i~~~d~~~~~~ 215 (869)
..+..+|+..|+.+..+++..+..
T Consensus 199 ~~v~~~a~~~L~~ls~dn~~~~~~ 222 (684)
T 4gmo_A 199 QDIYEEAISCLTTLSEDNLKVGQA 222 (684)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHH
Confidence 468888888888888765544333
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=72.06 E-value=7.3 Score=46.16 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHhhcCCCCHHHHhHHHHHhccCCCh-hhHHH-----HH-HHHHHHhcCCChHHHHHHHHHHhhhccc-ChHHH
Q 002900 110 SLMKDMTSKTDMYRANAIRVLCRITDG-TLLTQ-----IE-RYLKQAIVDKNPVVASAALVSGIHLLQT-TPEIV 176 (869)
Q Consensus 110 sl~kDl~s~n~~vr~lALr~L~~I~~~-~~~~~-----l~-~~i~~~l~d~~p~VRk~A~lal~~L~~~-~pe~v 176 (869)
.+.+.|+|+++..|..|+.+|++|... ++... ++ +.|.+++.|+++-||..|+-++..|... .+++.
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345669999999999999999997653 23222 33 4467789999999999999988777543 45543
No 121
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=71.70 E-value=21 Score=43.71 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=66.5
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc--cHH-HHH---HHHHHHHhhcCCcchHHHHHHHHHHHHHh-CCchH
Q 002900 347 LMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL--KYR-SLM---NFLSNILREEGGFEYKKAIVDSIVILIRD-IPDAK 419 (869)
Q Consensus 347 Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~--~~~-~~v---~~ll~ll~~~g~~~~~~~iv~~i~~ii~~-~p~~~ 419 (869)
++..|.+.+.+.... ..+..+|..+|.+++. ..+ +++ ..+++...+.+ ..|++++...+..++.. +|+..
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHHH
Confidence 444444444433322 5566666666655532 122 222 22333333222 24555555555555554 34455
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCC-----hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Q 002900 420 ENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSD-----PSKYIRYIYNRVHLENATVRAAAVSTLAKFGA 487 (869)
Q Consensus 420 ~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~-----~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~ 487 (869)
..++..|.+++..-.-=+.+.+++.+++.......+ -++++-.+-+......++|+.++..++.|++.
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 566666666665433334555566666655443210 11222333333444556666666666666654
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=70.01 E-value=1.6e+02 Score=36.46 Aligned_cols=137 Identities=9% Similarity=0.056 Sum_probs=83.5
Q ss_pred cCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhc----CC--cchHHHHHHHHHHH
Q 002900 338 TGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREE----GG--FEYKKAIVDSIVIL 411 (869)
Q Consensus 338 l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~----g~--~~~~~~iv~~i~~i 411 (869)
.|.++-+..+.+.|.+.+...+.+-+...+++||.+.. |. .++.+.+++... .+ ..+..+++.+++.+
T Consensus 432 ~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~ 505 (1056)
T 1lsh_A 432 SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI 505 (1056)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTG
T ss_pred CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hh----HHHHHHHhhcCccccccccchHHHHHHHHHHHHh
Confidence 36666678888888877777777778899999999875 43 355666666421 11 12333445566666
Q ss_pred HHhCCchHHHHHHHHHHhhh-ccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccC-CCHHHHHHHHHHHHHHhc
Q 002900 412 IRDIPDAKENGLLHLCEFIE-DCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHL-ENATVRAAAVSTLAKFGA 487 (869)
Q Consensus 412 i~~~p~~~~~~l~~L~~~l~-~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~-e~~~vr~~~ltal~Kl~~ 487 (869)
....|+. +-..|...+. ..+.++++.+++++|-+..| +...+..|.+.... .+..|+....+.+--++.
T Consensus 506 ~~~~p~~---v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P----~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 506 AKRDPRK---VQEIVLPIFLNVAIKSELRIRSCIVFFESKP----SVALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp GGTCHHH---HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCC----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hhhchHH---HHHHHHHHhcCCCCChHHHHHHHHHHHHHCc----CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 5544432 3333444443 34567888887777765432 24556666665544 466777777666665544
No 123
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=69.93 E-value=1.3e+02 Score=32.63 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHH
Q 002900 230 AQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRF 309 (869)
Q Consensus 230 ~~v~llr~l~~~~~~~~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry 309 (869)
..+..++.++.++.. .||+....+++-+..+-.+.+..|.-.++..|-..-....+....++..|..+|.+.++++.=
T Consensus 41 ~Kl~~L~q~~EL~l~--~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 41 SKITVLKQVQELIIN--KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHHT--TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 456666666664332 167666667766666666666666666666554321113445566777777777766665422
Q ss_pred HHHHHhccccCCCCCHHHHHHHHHHhhccCCh-----hhH---HHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCc--
Q 002900 310 AAVRTLNKSLISDQNRSIATLAITTLLKTGNE-----SSV---DRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPL-- 379 (869)
Q Consensus 310 ~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e-----~nv---~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~-- 379 (869)
.++.+. .+|=+.++..+..-.+. +.. ..+-..+.......++..|..+++-+..+..-+.+
T Consensus 119 ~~I~~~---------tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~ 189 (386)
T 3o2t_A 119 KAILTM---------TQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRM 189 (386)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHH---------HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCC
Confidence 222221 11234444444333321 111 23333455545555677777777777666543321
Q ss_pred --------------------------------cHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHhCCchHHHHHHHH
Q 002900 380 --------------------------------KYRSLMNFLSNILREEGG-FEYKKAIVDSIVILIRDIPDAKENGLLHL 426 (869)
Q Consensus 380 --------------------------------~~~~~v~~ll~ll~~~g~-~~~~~~iv~~i~~ii~~~p~~~~~~l~~L 426 (869)
....+++.|++++..... -..-..+++.+..|++..|.....++..|
T Consensus 190 ~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL 269 (386)
T 3o2t_A 190 ADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAY 269 (386)
T ss_dssp TTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHH
T ss_pred CCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 123456777777764221 11234677788888888888877777766
Q ss_pred HHh
Q 002900 427 CEF 429 (869)
Q Consensus 427 ~~~ 429 (869)
..+
T Consensus 270 ~~l 272 (386)
T 3o2t_A 270 ETL 272 (386)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 124
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=68.36 E-value=9.3 Score=38.67 Aligned_cols=78 Identities=8% Similarity=0.020 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHH----HHhhhccc--ChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcC
Q 002900 136 GTLLTQIERYLKQAIVDKNPVVASAALV----SGIHLLQT--TPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQND 209 (869)
Q Consensus 136 ~~~~~~l~~~i~~~l~d~~p~VRk~A~l----al~~L~~~--~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d 209 (869)
+...+.+..-+ .|.+.++|+.|+. -+..+..+ ..+-...++..+...+.|.+..|.-+.--+|-++...+
T Consensus 107 ~~~~~~~~~W~----~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 107 NIAQDVADKWI----ASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp SSHHHHHHHHH----HSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHH----cCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 45555566666 6677777777777 32332222 22344556666666666666666665555666666666
Q ss_pred hhHHHHHH
Q 002900 210 RLAVSKLV 217 (869)
Q Consensus 210 ~~~~~~li 217 (869)
+..+.+.+
T Consensus 183 ~~~~~~al 190 (235)
T 1t06_A 183 VPLHEKAV 190 (235)
T ss_dssp GGGHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 125
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.33 E-value=58 Score=30.24 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHH
Q 002900 266 KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVD 345 (869)
Q Consensus 266 ~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~ 345 (869)
.+-+..+|-+-.|-.-. ..+. .|+..|.+-|.++++++.+.||..+.. | ++..--.....+++.+=.+
T Consensus 27 ~dw~~ileicD~I~~~~-~~pk---~a~ral~krl~~~n~~v~l~AL~LLe~-c-------vkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 27 LDWASINGFCEQLNEDF-EGPP---LATRLLAHKIQSPQEWEAIQALTVLET-C-------MKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CCHHHHHHHHHHGGGSS-SHHH---HHHHHHHHHHTCSSHHHHHHHHHHHHH-H-------HHHCCHHHHHHHTSHHHHH
T ss_pred cCHHHHHHHHHHHHCCC-CcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHH-H-------HHhcCHHHHHHHhhHHHHH
Confidence 34455555555543322 1122 466667777777888877777665521 1 1110001112223443333
Q ss_pred HHHHHHHH-hh-hhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC
Q 002900 346 RLMKQITN-FM-SDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (869)
Q Consensus 346 ~Il~eL~~-y~-~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g 396 (869)
.+++-+.. |. ...+...|..++.-|..|+..|+.... + .-..+.|+..|
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~-i-~~~Y~~Lk~~G 145 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVK-I-AEAYQMLKKQG 145 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHH-H-HHHHHHHHHTT
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCch-H-HHHHHHHHHCc
Confidence 43333321 32 235788999999999999999988754 3 33444455444
No 126
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=57.06 E-value=2.4e+02 Score=33.69 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh---HHH-HHHHHHHHHHhcC---CChhHHHHHHHHHHHHh
Q 002900 136 GTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP---EIV-KRWSNEVQEAVQS---RAALVQFHALALLHQIR 206 (869)
Q Consensus 136 ~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p---e~v-~~~~~~l~~~l~d---~~~~v~~~al~ll~~i~ 206 (869)
..+++.+.+.+..++-+++..|...+.-|+-.|.-..| +++ +..++++...|.. ..+.=..+|+..|..+.
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 45778888899999999999999999999999888777 976 5788888888866 45555555665554443
No 127
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=56.25 E-value=17 Score=44.81 Aligned_cols=111 Identities=7% Similarity=0.061 Sum_probs=77.4
Q ss_pred HHHhhcCCCc-cchhH-HHHHHHHhCCC---cchhHhhhhHHHhhcC-CCCHHHHhHHHHHhcc-------CCChhhHHH
Q 002900 75 VTKLFQSRDI-GLRRM-VYLMIKELSPS---ADEVIIVTSSLMKDMT-SKTDMYRANAIRVLCR-------ITDGTLLTQ 141 (869)
Q Consensus 75 v~kl~~s~d~-~lKrl-~Yl~l~~~~~~---~d~~~Lvinsl~kDl~-s~n~~vr~lALr~L~~-------I~~~~~~~~ 141 (869)
+.++...+|. ++.++ .+..+..++.. ++.+-.++++|..-.. +++. .|..+|.++-. +..++-...
T Consensus 765 ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~ 843 (997)
T 1vsy_5 765 LIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNK 843 (997)
T ss_dssp TCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHH
T ss_pred HHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3344455555 78888 77777666543 4556778888877676 6788 99999988532 233444467
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHhhhcccC-h-HHHHHHHHHHHHH
Q 002900 142 IERYLKQAIVDKN-PVVASAALVSGIHLLQTT-P-EIVKRWSNEVQEA 186 (869)
Q Consensus 142 l~~~i~~~l~d~~-p~VRk~A~lal~~L~~~~-p-e~v~~~~~~l~~~ 186 (869)
+...|.++|.|+. .-||..|+.++.-+.+-. + ..+..++....+.
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~ 891 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG 891 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 8889999999999 999999999998776655 5 4444555544443
No 128
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=55.51 E-value=46 Score=32.97 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=56.8
Q ss_pred HHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHH
Q 002900 111 LMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180 (869)
Q Consensus 111 l~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~ 180 (869)
+.+=+.|+|+.+|=.|+-.+-.-....-.+.+.+.+..++.|++-||||+.+=++--+++++|+.+..++
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4555688999888777766544444445566778888899999999999999999999999999999888
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=54.67 E-value=75 Score=29.04 Aligned_cols=93 Identities=11% Similarity=0.150 Sum_probs=51.1
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 002900 291 PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAI 370 (869)
Q Consensus 291 ~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI 370 (869)
.|+..|.+-|.++++++.+.||..+.. |.+.--. .....+++.+ .+++|..-++..+...|..++.-|
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~-~vkNcG~-------~f~~evas~~----Fl~el~~l~~~~~~~Vk~kil~li 109 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGA-CVSNCGK-------IFHLEVCSRD----FASEVSNVLNKGHPKVCEKLKALM 109 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHH-HHHHSCH-------HHHHHHSSHH----HHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHH-HHHhcCH-------HHHHHHhhHH----HHHHHHHHhccCCHHHHHHHHHHH
Confidence 466667777777777777776655421 1111100 0111123333 233333333346778999999999
Q ss_pred HHHHhhCCcc--HHHHHHHHHHHHhhcC
Q 002900 371 RSLCLKFPLK--YRSLMNFLSNILREEG 396 (869)
Q Consensus 371 ~~la~k~~~~--~~~~v~~ll~ll~~~g 396 (869)
..|+..|+.. ...+.+. .+.|+.+|
T Consensus 110 ~~W~~~f~~~~~l~~i~~~-Y~~Lk~~G 136 (140)
T 3ldz_A 110 VEWTDEFKNDPQLSLISAM-IKNLKEQG 136 (140)
T ss_dssp HHHHHHHTTCGGGTHHHHH-HHHHHHTT
T ss_pred HHHHHHhCCCCCchHHHHH-HHHHHHcc
Confidence 9999988765 3344443 34445444
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=54.67 E-value=81 Score=29.68 Aligned_cols=117 Identities=9% Similarity=0.114 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHH
Q 002900 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDR 346 (869)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~ 346 (869)
+-+..+|.+..|-.-. ..+ ..|+..|.+-|.++++++++.||..|. .=++..--.....+++.+-.+.
T Consensus 32 Dw~~~leicD~I~~~~-~~~---keA~ral~krl~~~n~~vql~AL~LLd--------~~vkNcG~~Fh~evas~~Fl~e 99 (163)
T 1x5b_A 32 DWSLIMDICDKVGSTP-NGA---KDCLKAIMKRVNHKVPHVALQALTLLG--------ACVANCGKIFHLEVCSRDFATE 99 (163)
T ss_dssp CHHHHHHHHHHHHHSS-SHH---HHHHHHHHHHHTCSSHHHHHHHHHHHH--------HHHHHTCHHHHHHHTSHHHHHH
T ss_pred CHHHHHHHHHHHhCCC-ccH---HHHHHHHHHHHcCCCHHHHHHHHHHHH--------HHHHHhhHHHHHHHhhHHHHHH
Confidence 4445555554443321 112 245666777777788888777776652 1111111111222344444444
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCcc--HHHHHHHHHHHHhhcCCcch
Q 002900 347 LMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLK--YRSLMNFLSNILREEGGFEY 400 (869)
Q Consensus 347 Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~--~~~~v~~ll~ll~~~g~~~~ 400 (869)
+++-+. ...+...|..++.-|..|+..|+.. +..+.+ +.+.|+..| +.|
T Consensus 100 l~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~-~Y~~Lk~~G-~~F 150 (163)
T 1x5b_A 100 VRAVIK---NKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISA-TIKSMKEEG-ITF 150 (163)
T ss_dssp HHHHHH---TTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHH-HHHHHHTTT-CCC
T ss_pred HHHHHc---cCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH-HHHHHHHcC-CCC
Confidence 443332 2256789999999999999999875 444444 444555444 444
No 131
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=53.97 E-value=98 Score=30.81 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=34.8
Q ss_pred CCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHH
Q 002900 116 TSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSN 181 (869)
Q Consensus 116 ~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~ 181 (869)
.|+|+..|=.|+-.+-......-...+...+..++.|.+.||||+.+=++-.+++++|+.+..++.
T Consensus 141 ~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 141 ASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 445555555554443322222223344455555556666666666666666666666666655554
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.61 E-value=96 Score=30.83 Aligned_cols=115 Identities=11% Similarity=0.179 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHH
Q 002900 267 AEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDR 346 (869)
Q Consensus 267 ~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~ 346 (869)
+-+..+|-+-.|-.-. ..++ .|+..|.+-|.++++++.+.||..|. .-++.---.....+++.+-++.
T Consensus 25 dw~~ileicD~I~~~~-~~~k---~a~ral~krl~~~n~~v~l~aL~LLe--------~~vkNcG~~f~~eias~~fl~~ 92 (226)
T 3zyq_A 25 DWESILQICDLIRQGD-TQAK---YAVNSIKKKVNDKNPHVALYALEVME--------SVVKNCGQTVHDEVANKQTMEE 92 (226)
T ss_dssp CHHHHHHHHHHHHTTS-SCHH---HHHHHHHHHHTCSSHHHHHHHHHHHH--------HHHHHHCHHHHHHHSSHHHHHH
T ss_pred CHHHHHHHHHHHhCCC-ccHH---HHHHHHHHHHcCCCHHHHHHHHHHHH--------HHHHhcchHHHHhhccHHHHHH
Confidence 3345555555543321 1222 46666767677788887777776552 1122111112222344443333
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHH-HHHHHHHHHHhhcC
Q 002900 347 LMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR-SLMNFLSNILREEG 396 (869)
Q Consensus 347 Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~-~~v~~ll~ll~~~g 396 (869)
+.+-+. ...+.+.|..++.-|..|+..|+...+ .++.-+.+.|...|
T Consensus 93 l~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 140 (226)
T 3zyq_A 93 LKDLLK---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEG 140 (226)
T ss_dssp HHHHHH---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHhc---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Confidence 333222 235678999999999999999976532 23333444455444
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=52.16 E-value=75 Score=29.39 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=52.1
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhh------hccHHHHH
Q 002900 291 PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMS------DIADEFKI 364 (869)
Q Consensus 291 ~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~------~~~~~~r~ 364 (869)
.|+..|.+-|.++++++.+.||..+.. |.+.-- -.....+++. ..+++|.+.+. ..+.+.|.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~-~vkNCG-------~~fh~evas~----~Fl~eL~kl~~~k~~~~~~~~~Vk~ 105 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEM-CMNHCG-------EKFHSEVAKF----RFLNELIKVLSPKYLGSWATGKVKG 105 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHH-HHHHSC-------HHHHHHHTSH----HHHHHHHHTTCCSTTSCCCCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHcC-------HHHHHHHhhH----HHHHHHHHHHccccCCCCCCHHHHH
Confidence 455666666677777777776665421 111100 0011112232 34444444332 24778999
Q ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC
Q 002900 365 VVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (869)
Q Consensus 365 ~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g 396 (869)
.++.-|..|+..|+.... +.-+.+.|...|
T Consensus 106 kil~li~~W~~~f~~~p~--i~~~y~~Lk~~G 135 (148)
T 1mhq_A 106 RVIEILFSWTVWFPEDIK--IRDAYQMLKKQG 135 (148)
T ss_dssp HHHHHHHHHHHHCTTCHH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCch--HHHHHHHHHHcC
Confidence 999999999999988765 344555566554
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=52.09 E-value=1.3e+02 Score=27.40 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=47.5
Q ss_pred HHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhcc------------CCChhhHHHHHHHHHHHhcCCChHH
Q 002900 91 YLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQIERYLKQAIVDKNPVV 157 (869)
Q Consensus 91 Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~------------I~~~~~~~~l~~~i~~~l~d~~p~V 157 (869)
.+-++..... ++-.--++-+|+|=|+++||.++-+||..|-. |...++.+.+...+ ...++-|
T Consensus 26 ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~----~~~~~~V 101 (140)
T 3ldz_A 26 ILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL----NKGHPKV 101 (140)
T ss_dssp HHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHH----HHSCHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHh----ccCCHHH
Confidence 3444555444 45577888999999999999888888876643 44555555554443 3467888
Q ss_pred HHHHHHHH
Q 002900 158 ASAALVSG 165 (869)
Q Consensus 158 Rk~A~lal 165 (869)
|++.+..+
T Consensus 102 k~kil~li 109 (140)
T 3ldz_A 102 CEKLKALM 109 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88865543
No 135
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=51.99 E-value=2.4e+02 Score=29.83 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=46.2
Q ss_pred HHhcCCChHHHHHHHHHHhhhcccChHHHHHHH-----HHHHHHhcCCChhHHHHHHHHHHHHhhc
Q 002900 148 QAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS-----NEVQEAVQSRAALVQFHALALLHQIRQN 208 (869)
Q Consensus 148 ~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~-----~~l~~~l~d~~~~v~~~al~ll~~i~~~ 208 (869)
..|.+++.-.+|.|+..+-+++..+++.+.+|+ ..+.+...+.+...+..++.+|.++-.+
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Confidence 344567788999999999998888888888766 4555666666778888888887776543
No 136
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=49.95 E-value=66 Score=40.68 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhhCCccH-HHHHHHHHHHHhhc---C--------------C-------cchHHHHHHHHHHHHHh-
Q 002900 361 EFKIVVVEAIRSLCLKFPLKY-RSLMNFLSNILREE---G--------------G-------FEYKKAIVDSIVILIRD- 414 (869)
Q Consensus 361 ~~r~~~v~aI~~la~k~~~~~-~~~v~~ll~ll~~~---g--------------~-------~~~~~~iv~~i~~ii~~- 414 (869)
+||+.+...+..+|..+|... ..+..++...+... + . +...++.+..+..+++.
T Consensus 438 ~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 438 SSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQM 517 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999887743 33444444444321 0 0 00112222223333222
Q ss_pred -----CCchHHHHHHHHHHhhh--ccCchhHHHHHHhhhcCCCCCCC-Ch---HHHHHHHHhhccC------------CC
Q 002900 415 -----IPDAKENGLLHLCEFIE--DCEFTYLSTQILHFLGTEGPKTS-DP---SKYIRYIYNRVHL------------EN 471 (869)
Q Consensus 415 -----~p~~~~~~l~~L~~~l~--~~~~~~~~~~~l~ilGE~~~~~~-~~---~~~l~~i~~~~~~------------e~ 471 (869)
.++.....+..|+..+- +.+++.++.+.+-++|.|+.... +| ..++.+|+..+.. .+
T Consensus 518 ~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 518 FRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred hcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 24443344566666643 34678888777877776665533 33 3345555554332 13
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 002900 472 ATVRAAAVSTLAKFGAMVD 490 (869)
Q Consensus 472 ~~vr~~~ltal~Kl~~~~~ 490 (869)
..+|.++-+++.+++..++
T Consensus 598 k~vr~~a~~al~~L~~~~~ 616 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYP 616 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4789999999999988875
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=48.84 E-value=76 Score=30.12 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHH
Q 002900 266 KAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVD 345 (869)
Q Consensus 266 ~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~ 345 (869)
.+-+..+|-+..|-.-.. .+ ..|+..|.+-|.++++++++.||..|. .=++..--.....+++.+=.+
T Consensus 29 ~Dw~~ileicD~I~~~~~-~~---k~A~ral~krl~~~n~~vql~AL~LLd--------~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 29 EDWEYIIGFCDQINKELE-GP---QIAVRLLAHKIQSPQEWEALQALTVLE--------ACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp CCHHHHHHHHHHHHHSTT-HH---HHHHHHHHHHHTCSSHHHHHHHHHHHH--------HHHHHSHHHHHHHHTSHHHHH
T ss_pred cCHHHHHHHHHHHHcCCc-cH---HHHHHHHHHHhcCCCHHHHHHHHHHHH--------HHHHHcCHHHHHHHhhHHHHH
Confidence 344455555555543221 11 246666777777788888877776652 112221111222234444444
Q ss_pred HHHHHHHH-hh-hhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcC
Q 002900 346 RLMKQITN-FM-SDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 396 (869)
Q Consensus 346 ~Il~eL~~-y~-~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g 396 (869)
.+++-+.. |. ...+...|..++.-|..|+..|+.... +.-+.+.|+..|
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~--i~~~y~~Lk~~G 147 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAK--IKDAYHMLKRQG 147 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHTT
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHCC
Confidence 43333221 21 235678999999999999999987643 444555566554
No 138
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=47.24 E-value=2.6e+02 Score=32.38 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHH
Q 002900 470 ENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVR 512 (869)
Q Consensus 470 e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evr 512 (869)
++..+....+..+.++..-+|+++..|..++-..+-..|.++|
T Consensus 225 ~s~~~~~~Yv~NLLrl~~Y~PeL~~~Il~LIierlikiDVeiq 267 (649)
T 3tj1_A 225 DTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIISIDVELQ 267 (649)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhccc
Confidence 3444455555556666666788887777666655555555554
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.24 E-value=1.5e+02 Score=29.27 Aligned_cols=94 Identities=11% Similarity=0.200 Sum_probs=53.6
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 002900 291 PAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAI 370 (869)
Q Consensus 291 ~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI 370 (869)
.|+..|.+-|.++++++.+.||..|.. -++.---.....+++.+..+.+++-+.+ ..+.+.|..++.-|
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~--------~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil~li 110 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLES--------IVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHH--------HHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH--------HHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHH
Confidence 456666666777888887777766521 1221111122234666655555543333 34678899999999
Q ss_pred HHHHhhCCcc--HHHHHHHHHHHHhhcC
Q 002900 371 RSLCLKFPLK--YRSLMNFLSNILREEG 396 (869)
Q Consensus 371 ~~la~k~~~~--~~~~v~~ll~ll~~~g 396 (869)
..|+..|+.. +..+.+. .+.|...|
T Consensus 111 ~~W~~~f~~~~~~~~i~~~-y~~Lk~~G 137 (220)
T 1dvp_A 111 QTWAYAFRSSDKYQAIKDT-MTILKAKG 137 (220)
T ss_dssp HHHHHHTTTCSSCCHHHHH-HHHHHHTT
T ss_pred HHHHHHhccchHHHHHHHH-HHHHhhcC
Confidence 9999887643 3333333 33444344
No 140
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=41.73 E-value=2.4e+02 Score=30.52 Aligned_cols=140 Identities=15% Similarity=0.207 Sum_probs=77.6
Q ss_pred HhhHHHHHHHHHcCCCchhH----HHH----HHHhccccCCCCCHHHHHHHHHHhhcc-----CChhhHHHHH-HHHHHh
Q 002900 289 LTPAITVLQLFLSSSKPVLR----FAA----VRTLNKSLISDQNRSIATLAITTLLKT-----GNESSVDRLM-KQITNF 354 (869)
Q Consensus 289 ~~~a~~~L~~~L~s~~~n~r----y~a----L~~l~~~~L~d~d~sI~~~aL~lL~~l-----~~e~nv~~Il-~eL~~y 354 (869)
+..+...+.+|+.+++...+ |.- ++.+ .+++.+|+.=|..--++|-++ +--.-+.+.+ +.+.+|
T Consensus 146 LqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll--~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~f 223 (392)
T 2jak_A 146 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLL--ELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 223 (392)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHH--HHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHH--HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788877654322 221 2222 557777765555544544332 2223333333 345566
Q ss_pred hhhccHHH-HHHHHHHHHHHHhhCCc----cHHH-HHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 002900 355 MSDIADEF-KIVVVEAIRSLCLKFPL----KYRS-LMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCE 428 (869)
Q Consensus 355 ~~~~~~~~-r~~~v~aI~~la~k~~~----~~~~-~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~ 428 (869)
+.+...-. -.++++-+|.+...|+. .+.. +...++.+.+...-..+.......+.+.+.+.|.+-+.++..|..
T Consensus 224 iye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk 303 (392)
T 2jak_A 224 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLK 303 (392)
T ss_dssp HTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 55433222 35788888888888852 1221 234445555544333466777778888888888777776666665
Q ss_pred hh
Q 002900 429 FI 430 (869)
Q Consensus 429 ~l 430 (869)
+=
T Consensus 304 ~W 305 (392)
T 2jak_A 304 YW 305 (392)
T ss_dssp SS
T ss_pred hC
Confidence 53
No 141
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=40.24 E-value=50 Score=30.33 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHH
Q 002900 137 TLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180 (869)
Q Consensus 137 ~~~~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~ 180 (869)
+.++.++..|.+-|.+++|+|.-||+-.+-+|.+.-++-+.+|+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~ 88 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREM 88 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHH
Confidence 55688888899999999999999999999888876555444433
No 142
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=39.99 E-value=3.8e+02 Score=29.52 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=75.2
Q ss_pred HhhHHHHHHHHHcCCCchh----HHHHHHHhcc--ccCCCCCHHHHHHHHHHhhcc-----CChhhHHHHH-HHHHHhhh
Q 002900 289 LTPAITVLQLFLSSSKPVL----RFAAVRTLNK--SLISDQNRSIATLAITTLLKT-----GNESSVDRLM-KQITNFMS 356 (869)
Q Consensus 289 ~~~a~~~L~~~L~s~~~n~----ry~aL~~l~~--~~L~d~d~sI~~~aL~lL~~l-----~~e~nv~~Il-~eL~~y~~ 356 (869)
+..+...+.+|+.+++.+. +|.--+-+.+ .+++.+|+.=|..--++|-++ +--.-+.+-+ +.+.+|+.
T Consensus 134 LqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~ 213 (449)
T 2npp_B 134 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY 213 (449)
T ss_dssp HHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888766432 2222111111 567777765555544444322 2223333322 24455554
Q ss_pred hccHH-HHHHHHHHHHHHHhhCCc-cHHHHHHH----HHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhh
Q 002900 357 DIADE-FKIVVVEAIRSLCLKFPL-KYRSLMNF----LSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFI 430 (869)
Q Consensus 357 ~~~~~-~r~~~v~aI~~la~k~~~-~~~~~v~~----ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l 430 (869)
+...- =-.++++-+|.+..-|+. -.+....| |+.+.+...-..+.......+.+.+.++|.+-+.++..|+.+=
T Consensus 214 e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~W 293 (449)
T 2npp_B 214 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW 293 (449)
T ss_dssp TCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Confidence 43322 235677777777777752 11233333 4444444333345667777777777777777776666666553
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=36.91 E-value=2.8e+02 Score=29.28 Aligned_cols=94 Identities=10% Similarity=0.107 Sum_probs=52.3
Q ss_pred hhcCCCCHHHHhHHHHHhccCCCh-----hhH--HHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCh---HHHHHH---
Q 002900 113 KDMTSKTDMYRANAIRVLCRITDG-----TLL--TQIERYLKQAIVDKNPVVASAALVSGIHLLQTTP---EIVKRW--- 179 (869)
Q Consensus 113 kDl~s~n~~vr~lALr~L~~I~~~-----~~~--~~l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~p---e~v~~~--- 179 (869)
+=..+...-+.+-|||++..+..- .++ +..+.-|...+....+.|-|.|+-=+..+....+ .++.+-
T Consensus 167 ~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~ 246 (339)
T 3dad_A 167 RVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNS 246 (339)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHH
Confidence 333455778899999999988776 333 3355566666666667776665544443332221 122211
Q ss_pred ---------HHHHHHHhc---CCChhHHHHHHHHHHHHh
Q 002900 180 ---------SNEVQEAVQ---SRAALVQFHALALLHQIR 206 (869)
Q Consensus 180 ---------~~~l~~~l~---d~~~~v~~~al~ll~~i~ 206 (869)
...+...|. ..|..++.+|+.++..+-
T Consensus 247 v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 247 VASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp HHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 123334443 445667777777765443
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.62 E-value=2.2e+02 Score=28.10 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhcc------------CCChhhHHHHHHHHHHHhcCCChHH
Q 002900 91 YLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQIERYLKQAIVDKNPVV 157 (869)
Q Consensus 91 Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~------------I~~~~~~~~l~~~i~~~l~d~~p~V 157 (869)
-+-++.+... ++-.--++-+|+|=|+++||.++-+||..|-. |...++.+.|...+. ...++-|
T Consensus 29 ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~---~~~~~~V 105 (226)
T 3zyq_A 29 ILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK---RQVEVNV 105 (226)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH---HCCCHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc---cCCCHHH
Confidence 3444444433 45578889999999999999999888887653 566666666655543 2356778
Q ss_pred HHHHHHH
Q 002900 158 ASAALVS 164 (869)
Q Consensus 158 Rk~A~la 164 (869)
|++++.-
T Consensus 106 k~kil~l 112 (226)
T 3zyq_A 106 RNKILYL 112 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7775543
No 145
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=36.51 E-value=4.4e+02 Score=28.51 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=69.4
Q ss_pred HhhHHHHHHHHHcCCCchh----HHH----HHHHhccccCCCCCHHHHHHHHHHhhccCC-----hhhHHH-HHHHHHHh
Q 002900 289 LTPAITVLQLFLSSSKPVL----RFA----AVRTLNKSLISDQNRSIATLAITTLLKTGN-----ESSVDR-LMKQITNF 354 (869)
Q Consensus 289 ~~~a~~~L~~~L~s~~~n~----ry~----aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~-----e~nv~~-Il~eL~~y 354 (869)
+..+...+.+|+.+++.+- +|. .++.+ .+++.+|+.=|...-++|-++=. ..-+.+ |-..+..|
T Consensus 101 LqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll--~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~f 178 (403)
T 3fga_B 101 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLL--ELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 178 (403)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHH--HGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHH--HHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4456677778888775432 221 12222 55677776555555555543311 111111 11233344
Q ss_pred hhhccH-HHHHHHHHHHHHHHhhCCcc-HHHH----HHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 002900 355 MSDIAD-EFKIVVVEAIRSLCLKFPLK-YRSL----MNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCE 428 (869)
Q Consensus 355 ~~~~~~-~~r~~~v~aI~~la~k~~~~-~~~~----v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~ 428 (869)
+-+... .=-.+++.-+|.+..-|+.- .+.. ...|+.+.+...-..+.......+.+.+.++|.+-+.++..|+.
T Consensus 179 iye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk 258 (403)
T 3fga_B 179 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLK 258 (403)
T ss_dssp HHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 433221 11346777777777766421 1122 23344444433333455666667777777777666666666554
Q ss_pred hh
Q 002900 429 FI 430 (869)
Q Consensus 429 ~l 430 (869)
+=
T Consensus 259 ~W 260 (403)
T 3fga_B 259 YW 260 (403)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 146
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=36.12 E-value=3.3e+02 Score=26.86 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChh---h-H
Q 002900 269 MVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNES---S-V 344 (869)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~---n-v 344 (869)
-..++|++|+-.+-+.. ..+..+++.+.. +...+ .+|..+++.+|+.++++|..+|.-. . .
T Consensus 69 ~~~~~~l~CLkalmn~~--------~G~~~vl~~~~~-i~~l~------~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~ 133 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNK--------FGIKTMLETEEG-ILLLV------RAMDPAVPNMMIDAAKLLSALCILPQPEDMN 133 (233)
T ss_dssp HHHHHHHHHHHHHTSSH--------HHHHHHHTSSSH-HHHHH------TTCCTTSHHHHHHHHHHHHHHHTCSSSSCHH
T ss_pred HHHHHHHHHHHHHhCCh--------HHHHHHHcCcHH-HHHHH------HHhCCCCchHHHHHHHHHHHHHhCCCCCChH
Confidence 45677777776553321 112334444442 22211 4577888999999999998887543 4 6
Q ss_pred HHHHHHHHHh
Q 002900 345 DRLMKQITNF 354 (869)
Q Consensus 345 ~~Il~eL~~y 354 (869)
..+++-+.+|
T Consensus 134 ~~VL~Al~~~ 143 (233)
T 2f31_A 134 ERVLEAMTER 143 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6677666654
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.46 E-value=1.1e+02 Score=30.19 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=45.8
Q ss_pred HHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhcc------------CCChhhHHHHHHHHHHHhcCCChHHH
Q 002900 92 LMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQIERYLKQAIVDKNPVVA 158 (869)
Q Consensus 92 l~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~------------I~~~~~~~~l~~~i~~~l~d~~p~VR 158 (869)
+-++.+... ++..--++-+|+|=|+++||.++-+||..|-. |.+.++.+.+...+.+ ..++-||
T Consensus 27 leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk 103 (220)
T 1dvp_A 27 LLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVR 103 (220)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHH
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHH
Confidence 444444433 45577888899999999999999999877654 5566666666554433 3566777
Q ss_pred HHHH
Q 002900 159 SAAL 162 (869)
Q Consensus 159 k~A~ 162 (869)
++++
T Consensus 104 ~kil 107 (220)
T 1dvp_A 104 QKML 107 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 148
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=35.44 E-value=2.7e+02 Score=30.04 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCChh---h-H
Q 002900 269 MVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNES---S-V 344 (869)
Q Consensus 269 aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e~---n-v 344 (869)
-..++|++|+-.+-+... .+..++..+.. +...+ .+|..+++.+|+.++++|..+|.-. . .
T Consensus 73 ~~~~~~l~CLkalmN~~~--------Gl~~vl~~~~~-i~~l~------~sL~s~~~~~r~~vleLL~alc~~~~~~G~~ 137 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKF--------GIKTMLETEEG-ILLLV------RAMDPAVPNMMIDAAKLLSALCILPQPEDMN 137 (386)
T ss_dssp HHHHHHHHHHHHHTSSHH--------HHHHHHHSSSH-HHHHH------HTCCTTSHHHHHHHHHHHHHHHTCCSSTTHH
T ss_pred HHHHHHHHHHHHHhCCHH--------HHHHHHcCcHH-HHHHH------HHhCCCCchHHHHHHHHHHHHHcCCCCCChH
Confidence 466777777765543221 12334444432 22211 3477778889999999998887533 3 5
Q ss_pred HHHHHHHHHh
Q 002900 345 DRLMKQITNF 354 (869)
Q Consensus 345 ~~Il~eL~~y 354 (869)
..+++-+.+|
T Consensus 138 ~~VL~Al~~~ 147 (386)
T 2bnx_A 138 ERVLEAMTER 147 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666554
No 149
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=33.72 E-value=3.9e+02 Score=26.99 Aligned_cols=44 Identities=9% Similarity=-0.008 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHhCCchHHHHHHH
Q 002900 382 RSLMNFLSNILREEG-GFEYKKAIVDSIVILIRDIPDAKENGLLH 425 (869)
Q Consensus 382 ~~~v~~ll~ll~~~g-~~~~~~~iv~~i~~ii~~~p~~~~~~l~~ 425 (869)
..+++.|++++.... +...-..+++.+..|+++.|.....++..
T Consensus 211 ~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~a 255 (257)
T 3gs3_A 211 NNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEA 255 (257)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHHh
Confidence 345666666554321 11122456777777777777766555543
No 150
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=29.68 E-value=2.9e+02 Score=24.39 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=35.5
Q ss_pred cEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccC-CCCCC--CCCceEEEEEecC
Q 002900 649 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPL-RSLPY--DSPGQIFGAFEKP 706 (869)
Q Consensus 649 ~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~-~~L~~--~~~~~~~v~~~~~ 706 (869)
.+++.+.+.|+.+ ++++||.++....-. ++.....|- ..|+| +......+.+..+
T Consensus 30 ~~~i~~~~~N~s~-~~it~f~fqaAVPKs--~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~ 87 (122)
T 3zy7_A 30 VTVITIQASNSTE-LDMTDFVFQAAVPKT--FQLQLLSPSSSVVPAFNTGTITQVIKVLNP 87 (122)
T ss_dssp EEEEEEEEEECSS-SCBEEEEEEEECCTT--SEEEECCCSCSCBCGGGSCCEEEEEEEECT
T ss_pred eEEEEEEEEECCC-CccccEEEEEEcCcc--cEEEecCCCCCccCCCCCCCEEEEEEEECC
Confidence 3667777778774 579999999886543 777665444 36888 5444444444443
No 151
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=27.14 E-value=67 Score=37.46 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.7
Q ss_pred CcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccC-CCCCCCCCceEEEEE
Q 002900 648 RHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPL-RSLPYDSPGQIFGAF 703 (869)
Q Consensus 648 ~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~-~~L~~~~~~~~~v~~ 703 (869)
..+...+.++|.++ .+|+|..+.++..+- ......+.. +.++||++.+..+.|
T Consensus 601 ~~~~v~v~f~NPL~-~~L~~c~~~vEG~GL--~~~~~~~~~~~~v~pg~~~~~~~~~ 654 (687)
T 2q3z_A 601 RKLVAEVSLQNPLP-VALEGCTFTVEGAGL--TEEQKTVEIPDPVEAGEEVKVRMDL 654 (687)
T ss_dssp SCEEEEEEEECCSS-SCBCSEEEEEECTTT--CSSCEEEEECSCBCTTCEEEEEEEE
T ss_pred CeEEEEEEEECCCC-CcccceEEEEECCCC--CCCceEEecCCCcCCCCEEEEEEEE
Confidence 36678999999995 699999998886542 333234455 789999997666655
No 152
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=26.56 E-value=3.8e+02 Score=24.59 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=53.9
Q ss_pred HHhhcCCCccchhHHHHHHHHhCCC-cchhHhhhhHHHhhcCCCCHHHHhHHHHHhcc------------CCChhhHHHH
Q 002900 76 TKLFQSRDIGLRRMVYLMIKELSPS-ADEVIIVTSSLMKDMTSKTDMYRANAIRVLCR------------ITDGTLLTQI 142 (869)
Q Consensus 76 ~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~------------I~~~~~~~~l 142 (869)
-|+.+....+.---+-+-++..... ++-.--++-+|+|=++++||.+.-+||..|-. |...++.+.+
T Consensus 17 ekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL 96 (149)
T 3g2s_A 17 NRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNEL 96 (149)
T ss_dssp HHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHH
T ss_pred HHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 3333333333333344455555544 55577889999999999999999888876643 4555555554
Q ss_pred HHHHHHHhcC------CChHHHHHHHHHHh
Q 002900 143 ERYLKQAIVD------KNPVVASAALVSGI 166 (869)
Q Consensus 143 ~~~i~~~l~d------~~p~VRk~A~lal~ 166 (869)
. +.+.+ .++-||.+.+-.+.
T Consensus 97 ~----kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 97 I----KVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp H----HHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred H----HHHcccccCCCCCHHHHHHHHHHHH
Confidence 4 44443 46778888665443
No 153
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=25.88 E-value=4.2e+02 Score=26.11 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHH
Q 002900 382 RSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLL 424 (869)
Q Consensus 382 ~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~ 424 (869)
..+++.+...+.++..| ++.++--.++++-..+|+....++.
T Consensus 150 ~~~l~~i~~~l~~~~~~-v~kAi~W~Lr~~gk~~~~~~~~al~ 191 (235)
T 1t06_A 150 SDMLEMVKDTIHHSPER-TKSAMNNFLNTVAISYVPLHEKAVE 191 (235)
T ss_dssp HHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHccCChHH-HHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 33444444344433322 3333333455555555555444444
No 154
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=25.38 E-value=2.1e+02 Score=24.94 Aligned_cols=68 Identities=6% Similarity=0.081 Sum_probs=41.4
Q ss_pred EEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCceEEEEEecCCCCCcccccceeEEEEEee
Q 002900 651 VFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKE 725 (869)
Q Consensus 651 vl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~~~~v~~~~~~~~~~~~~f~~~l~f~v~~ 725 (869)
+..+.+.|+.+. + ..+.+.++..+ ++++....+ -.++||+...+-|.+..+......+ ...++|.+.+
T Consensus 34 ~Ytlki~Nkt~~-~-~~~~l~v~g~~--~l~~~g~~~-i~v~~g~~~~~~v~v~~~~~~~~~~--~~~i~f~v~~ 101 (118)
T 2r39_A 34 TYTLKVINKTQQ-V-QEYNLDVKGLN--DVSWYGKQT-IQVEPGEVLNLPMSLGADPDKLNSA--ITTIQFILTD 101 (118)
T ss_dssp EEEEEEEECSSS-C-EEEEEEEESCS--SCEEESCCE-EEECTTCEEEEEEEEEECGGGCSSS--EEEEEEEEEE
T ss_pred EEEEEEEECCCC-C-EEEEEEEeCCc--ccEEeCCCc-EEECCCCEEEEEEEEEEChHHccCC--ceeEEEEEEe
Confidence 455778898743 3 66777776543 366654211 3678898776666665554333222 4567888875
No 155
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=25.11 E-value=6.2e+02 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=15.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHH
Q 002900 255 FYDFLESCLRHKAEMVIFEAARAI 278 (869)
Q Consensus 255 l~~~l~~~L~~~~~aV~~ea~~~i 278 (869)
-+..+-.+|++.+.+|.+||...+
T Consensus 255 nLkl~M~LL~d~sk~Iq~EAFhVF 278 (341)
T 1upk_A 255 NLKLMMNLLRDKSRNIQFEAFHVF 278 (341)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhchhhhhhhhe
Confidence 344555667777777777776664
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.89 E-value=2.3e+02 Score=26.23 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHc-CCCchhHHHHHHHhccccCCCCCHHHHHHH
Q 002900 253 RPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLS-SSKPVLRFAAVRTLNKSLISDQNRSIATLA 331 (869)
Q Consensus 253 ~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~-s~~~n~ry~aL~~l~~~~L~d~d~sI~~~a 331 (869)
..+-++..+.+.+.+-+..+|-+..|-.-...+. .|+..|.+-|. ++++++++.||..+ |.=++..-
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k----~a~ral~krl~~~~n~~v~l~AL~LL--------d~~vkNcG 86 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPK----DALRAVKKRIVGNKNFHEVMLALTVL--------ETCVKNCG 86 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHH----HHHHHHHHHHTTCCCHHHHHHHHHHH--------HHHHHHSC
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH----HHHHHHHHHhccCCCHHHHHHHHHHH--------HHHHHHhC
Q ss_pred HHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHH-HHHHHHHHHHhhcC
Q 002900 332 ITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYR-SLMNFLSNILREEG 396 (869)
Q Consensus 332 L~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~-~~v~~ll~ll~~~g 396 (869)
-.....+++.+-.+.++-.+..--...+...|..++.-|..|+..|+...+ ..+.-+.+.|...|
T Consensus 87 ~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk~~G 152 (157)
T 1elk_A 87 HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKG 152 (157)
T ss_dssp HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
No 157
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=24.30 E-value=3e+02 Score=25.05 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=30.9
Q ss_pred cEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCC-CCCCCCC
Q 002900 649 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLR-SLPYDSP 696 (869)
Q Consensus 649 ~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~-~L~~~~~ 696 (869)
.+++...+.|+.. ++++||.++....-. +++....|-. .|+|+..
T Consensus 48 ~~~i~~~f~N~s~-~~it~f~fQaAVPKs--~kLqL~ppSg~~L~p~~~ 93 (140)
T 1gyu_A 48 VTVITIQASNSTE-LDMTDFVFQAAVPKT--FQLQLLSPSSSVVPAFNT 93 (140)
T ss_dssp EEEEEEEEEECSS-SCBEEEEEEEECCTT--CEEEECCCSCSCBCGGGC
T ss_pred EEEEEEEEEECCC-CccccEEEEEEcCcc--cEEEeeCCCCCccCCCCC
Confidence 3666677778764 679999999986543 7776654433 6888554
No 158
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=23.55 E-value=1.8e+02 Score=27.54 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH
Q 002900 142 IERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK 215 (869)
Q Consensus 142 l~~~i~~~l~d~~p~VRk~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~ 215 (869)
+...|.++-....+-.--...+.+..+.+..++-.+..+..|...+..+|+.|+..|+.+|-.+.++-+..+..
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 44444444444333333356667777776666666667777778888899999999999988777664444443
No 159
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=23.15 E-value=68 Score=37.40 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=38.6
Q ss_pred CcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCceEEEEE
Q 002900 648 RHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAF 703 (869)
Q Consensus 648 ~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~~~~v~~ 703 (869)
..+..++.++|.++ .+|+|..+.++..+- +.....+..+.++||++.+..+.|
T Consensus 608 ~~l~v~v~f~NPL~-~~L~~c~~~vEG~GL--~~~~~~~~~~~v~pg~~~~~~~~~ 660 (692)
T 1vjj_A 608 KPVNVQMLFSNPLD-EPVRDCVLMVEGSGL--LLGNLKIDVPTLGPKERSRVRFDI 660 (692)
T ss_dssp SCEEEEEEEECCSS-SCBCSEEEEEECTTT--SSSCEEEEECCBCTTCEEEEEEEE
T ss_pred CeEEEEEEEECCCC-CcccceEEEEECCCC--CCCceEEEcCccCCCCEEEEEEEE
Confidence 36788999999995 699999998886542 222334456789999997666655
No 160
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=23.14 E-value=1.9e+02 Score=26.60 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=38.5
Q ss_pred HHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHH
Q 002900 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (869)
Q Consensus 160 ~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~ 214 (869)
.+.+-+..+.+..|+-.+..+..|...+..+||.|+..|+.+|-.+.++-+..+.
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh 74 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFH 74 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4555666666556655566666777777888999999999998877766444443
No 161
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=22.47 E-value=7.3e+02 Score=29.30 Aligned_cols=135 Identities=10% Similarity=0.098 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHH
Q 002900 341 ESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKE 420 (869)
Q Consensus 341 e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~ 420 (869)
+.|...|.+.| ..++..-|..++.....++..---.+..+++.+. .|..+.+|.+-..+...+..+-...+..+.
T Consensus 490 ~~~~~~l~~~l----~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~-~l~~E~~~~~w~~~~~~l~~~~~~~~~~~~ 564 (780)
T 1z5h_A 490 DATFSDVMGHY----RDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIR-NFFDDEDHNVITAIVGQMEYLRMLTHAFDD 564 (780)
T ss_dssp HHHHHHHHHTG----GGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHG-GGTTCCCHHHHHHHHHHHHHHHTTCSTTHH
T ss_pred HHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HhccCCcHHHHHHHHHHHHHHHhchHHHHH
Confidence 44555554444 4567777888888888888754456667777664 566666776655555444444332122332
Q ss_pred HH---HHHHHHhhhccC---chhHHHHHHhhhcCCCCCCCChHHHHH--HHHhhccCCCHHHHHHHHHHHHHH
Q 002900 421 NG---LLHLCEFIEDCE---FTYLSTQILHFLGTEGPKTSDPSKYIR--YIYNRVHLENATVRAAAVSTLAKF 485 (869)
Q Consensus 421 ~~---l~~L~~~l~~~~---~~~~~~~~l~ilGE~~~~~~~~~~~l~--~i~~~~~~e~~~vr~~~ltal~Kl 485 (869)
.+ +..+.+.+...+ ...++..++-.++.+|+ .+++. .+++.+..-++..|..++.+.++.
T Consensus 565 ~~~~l~~~~~~~l~~~~~~~~~~~r~~~~~~a~~~~~-----~~~~~a~~~f~~~~~i~~~lr~~v~~~~~~~ 632 (780)
T 1z5h_A 565 DARAFCRSRMQFLTGKQDENLKIALGRVSRLYVMVDE-----SYAEEMSKLFKDFDSAEPEMRSSIATAYALV 632 (780)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-----HHHHHHHTTGGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 22 222223332101 11122233333444432 23333 222222233678888777777664
No 162
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=21.60 E-value=7.5e+02 Score=26.34 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhccccCCCCCHHHHHHHHHHhhccCCh---hh-
Q 002900 268 EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNE---SS- 343 (869)
Q Consensus 268 ~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~~~L~d~d~sI~~~aL~lL~~l~~e---~n- 343 (869)
..+.++|++|+-.+-+.. ..+..++..+. .++.++ .+|..+++.+|+.++++|..+|.- .+
T Consensus 134 ~~~q~~~l~CLkalmN~~--------~G~~~vl~~~~-~i~~l~------~~L~s~~~~~~~~aleLL~~lc~~~~~~gG 198 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNK--------FGIKTMLETEE-GILLLV------RAMDPAVPNMMIDAAKLLSALCILPQPEDM 198 (383)
T ss_dssp HHHHHHHHHHHHHHTSSH--------HHHHHHHTCSS-HHHHHH------HTCCTTSHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred HHHHHHHHHHHHHHhcch--------hhHHHHHcChH-HHHHHH------HHhCCCchHHHHHHHHHHHHHHhCcCcCCc
Confidence 356677777776554321 12233444443 233222 347778889999999999777642 44
Q ss_pred HHHHHHHHHHh
Q 002900 344 VDRLMKQITNF 354 (869)
Q Consensus 344 v~~Il~eL~~y 354 (869)
...+++-+.+|
T Consensus 199 ~~~VL~Al~~~ 209 (383)
T 3eg5_B 199 NERVLEAMTER 209 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777766664
No 163
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=21.37 E-value=1.4e+02 Score=27.96 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHhhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHH
Q 002900 160 AALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214 (869)
Q Consensus 160 ~A~lal~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~ 214 (869)
...+.+..+.+..++-.+..+..|...|..++|.|+..|+.+|-.+.++-+..+.
T Consensus 34 ~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh 88 (163)
T 1x5b_A 34 SLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFH 88 (163)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455555655555555556666777777888999999999998877766434343
No 164
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=20.53 E-value=7.6e+02 Score=25.96 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=74.2
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHhhCC--------ccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHH
Q 002900 350 QITNFMSDIADEFKIVVVEAIRSLCLKFP--------LKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKEN 421 (869)
Q Consensus 350 eL~~y~~~~~~~~r~~~v~aI~~la~k~~--------~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~ 421 (869)
.+-+|+...+.++..++......+-.+++ ..++|+.+.+-++|. .++|+.+..
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~-S~NYVTkRQ------------------ 228 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH-SENYVTKRQ------------------ 228 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT-CSSHHHHHH------------------
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc-CCcchhHHH------------------
Confidence 44456666666666666666666655543 456777777777666 456755443
Q ss_pred HHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHH
Q 002900 422 GLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLR 501 (869)
Q Consensus 422 ~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~ 501 (869)
.+..|-+.|-|-....++.+ |+ +-.+.++.+.+-+...+..+|.-+.. ..|++..+|.=.+.|..+|.
T Consensus 229 SlKLLgelLldr~N~~vM~~--Yi---------s~~~nLkl~M~LL~d~sk~Iq~EAFh-VFKvFVANP~K~~~I~~IL~ 296 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTK--YI---------SKPENLKLMMNLLRDKSRNIQFEAFH-VFKVFVANPNKTQPILDILL 296 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHH--HT---------TCHHHHHHHHHHTTCSCHHHHHHHHH-HHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHH--Hh---------CCHHHHHHHHHHhcCchhchhhhhhh-heeeeeeCCCCChHHHHHHH
Confidence 44555555555444444443 21 12356777777777778888877765 57888888855555555555
Q ss_pred H
Q 002900 502 R 502 (869)
Q Consensus 502 ~ 502 (869)
+
T Consensus 297 ~ 297 (341)
T 1upk_A 297 K 297 (341)
T ss_dssp H
T ss_pred H
Confidence 3
No 165
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.23 E-value=3.9e+02 Score=23.58 Aligned_cols=50 Identities=10% Similarity=0.211 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh
Q 002900 364 IVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRD 414 (869)
Q Consensus 364 ~~~v~aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~ 414 (869)
.+.|.++..+|..+...+..+++.+.+.+.... ..-+=.+...+-+|+++
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~-~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSA-YPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHH
Confidence 456777777777777777777777777666432 22333444455555543
No 166
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=20.06 E-value=4e+02 Score=24.34 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=30.6
Q ss_pred cEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCC-CCCCCCC
Q 002900 649 HVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLR-SLPYDSP 696 (869)
Q Consensus 649 ~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~-~L~~~~~ 696 (869)
.+++.....|+.. ++++||.++....-. ++.....|-. .|+|+..
T Consensus 54 ~~~i~~~f~N~s~-~~it~f~fQaAVPK~--~kLqL~ppSg~~L~p~~~ 99 (146)
T 1iu1_A 54 VTVITIQASNSTE-LDMTDFVFQAAVPKT--FQLQLLSPSSSIVPAFNT 99 (146)
T ss_dssp EEEEEEEEEECSS-SCBEEEEEEEECCTT--SEEEECCCSCSCBCGGGC
T ss_pred EEEEEEEEEeCCC-CccccEEEEEEcCcc--cEEEeeCCCCCccCCCCC
Confidence 3666667777764 679999999986543 7776654433 6888554
Done!