Your job contains 1 sequence.
>002901
MELKQDQDWQECDQEQEEGSQSSNETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLN
PYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVH
IFTRLEMFSIVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKN
VKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYH
TDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSAS
SSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSV
FSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKI
EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS
VKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEE
RKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNT
IEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPC
CPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVF
SQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGA
GVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRK
KKLAREAFRRKGKDQREVSTDDLRILMSL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002901
(869 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 1057 1.8e-148 2
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 1034 2.9e-148 2
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 1054 9.6e-148 2
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 1057 5.3e-147 2
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 1036 1.8e-146 2
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 1050 3.7e-146 2
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 1050 9.8e-146 2
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 712 1.7e-101 3
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 855 1.8e-85 1
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 603 1.4e-75 4
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 664 2.5e-74 3
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 664 3.0e-74 3
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 398 8.1e-73 4
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 356 1.7e-70 5
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 393 4.7e-70 4
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 397 1.2e-69 4
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 378 1.4e-69 4
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 323 3.9e-69 6
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 323 4.7e-69 6
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 374 2.6e-67 7
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 485 8.8e-66 4
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 329 3.0e-65 6
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 451 5.8e-65 3
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 335 7.8e-65 7
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 378 3.7e-63 4
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 313 3.4e-62 6
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 434 6.0e-61 3
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 325 1.1e-60 5
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 348 2.2e-60 6
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 339 5.0e-59 5
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 332 1.2e-58 4
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 276 8.5e-58 6
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 332 1.9e-57 5
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 307 3.1e-56 5
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 327 5.5e-54 3
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 330 2.9e-53 5
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 391 1.1e-52 4
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 303 3.8e-52 3
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 418 5.4e-52 3
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 305 1.5e-51 4
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 518 2.6e-51 4
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 255 8.0e-51 6
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 525 1.2e-50 2
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 299 2.8e-50 5
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 302 3.5e-50 5
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 285 3.3e-49 5
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 277 5.3e-49 6
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 277 5.3e-49 6
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 253 1.7e-47 5
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 283 2.9e-45 5
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 269 8.0e-43 3
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 280 1.3e-42 5
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 287 1.4e-42 4
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 287 1.4e-42 4
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 287 2.3e-42 3
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 271 5.1e-42 4
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 306 8.2e-42 3
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 306 8.2e-42 3
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 269 1.7e-40 3
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 274 4.1e-40 3
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 260 1.0e-39 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 257 2.3e-39 3
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 255 2.3e-39 3
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 252 2.6e-39 3
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 252 2.6e-39 3
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 252 2.6e-39 3
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 224 2.7e-39 4
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 250 3.4e-39 3
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 250 4.3e-39 3
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 250 4.3e-39 3
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 212 5.2e-39 5
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 273 8.5e-39 3
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 257 1.6e-38 3
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 267 1.6e-38 5
ASPGD|ASPL0000018137 - symbol:AN4187 species:162425 "Emer... 252 2.1e-38 3
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 250 3.5e-38 3
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 247 9.2e-38 3
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 241 1.2e-37 3
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 235 1.7e-37 4
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 235 1.7e-37 4
UNIPROTKB|B4E0W6 - symbol:BTAF1 "TATA-binding protein-ass... 240 1.9e-37 4
TIGR_CMR|BA_1804 - symbol:BA_1804 "helicase, putative" sp... 287 6.3e-37 3
ZFIN|ZDB-GENE-021025-1 - symbol:btaf1 "BTAF1 RNA polymera... 251 9.1e-37 4
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 271 4.3e-36 3
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 226 4.4e-36 4
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 231 5.3e-36 4
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 246 7.2e-36 5
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 227 8.7e-36 4
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 237 9.3e-36 4
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 224 1.2e-35 4
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 232 1.6e-35 4
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 232 1.7e-35 4
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 235 1.9e-35 3
UNIPROTKB|F1NHJ5 - symbol:BTAF1 "Uncharacterized protein"... 245 2.1e-35 4
RGD|2323132 - symbol:LOC100359912 "SWI/SNF-related matrix... 250 3.0e-35 2
UNIPROTKB|F1SCA0 - symbol:BTAF1 "Uncharacterized protein"... 240 4.6e-35 4
UNIPROTKB|E2QWL4 - symbol:BTAF1 "Uncharacterized protein"... 240 5.0e-35 4
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 229 5.4e-35 4
RGD|1564130 - symbol:Btaf1 "BTAF1 RNA polymerase II, B-TF... 240 5.8e-35 4
UNIPROTKB|O14981 - symbol:BTAF1 "TATA-binding protein-ass... 240 5.8e-35 4
WARNING: Descriptions of 464 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 1057 (377.1 bits), Expect = 1.8e-148, Sum P(2) = 1.8e-148
Identities = 229/552 (41%), Positives = 329/552 (59%)
Query: 333 KGKSVGMLNKSSSFMGK-KITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQD 389
+G S +K + K + TLI+CP SV S W+ Q +H + L Y+YYG DR +D
Sbjct: 458 RGASAVESSKKTDVEDKPRTTLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGPDRVRD 517
Query: 390 VEELKMYDLVLTTYSTLAIEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLN 448
L D+VLTTY+ L + +SP+ I W RVILDE H I+N NAQQ++ V +L
Sbjct: 518 PTLLSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLE 577
Query: 449 AKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLM 508
A+RRWV+TGTPIQN DL+SL++FL+ +PF + +W IQRP+ G+ GL RLQ L+
Sbjct: 578 AERRWVLTGTPIQNSLKDLWSLLSFLKLKPFVDREWWHRTIQRPVTMGDEAGLRRLQSLI 637
Query: 509 STISLRRTKD---KG--LIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGS 563
I+LRRTK KG ++ L + + ++ LS EERK+Y ++ + K + Y N G+
Sbjct: 638 KNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGKATIGRYFNEGT 697
Query: 564 LMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGED 623
++ +Y+ VL +LLRLRQIC + L + V S PS L+KK+ +L G D
Sbjct: 698 VLAHYADVLGLLLRLRQICCHTHLLANAVSSSGPSGNDTPEELRKKLIKKMKLILSSGSD 757
Query: 624 FXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESS 681
T CAH+FC+ CI + +Q+ +P CPLCR+ + L PPE
Sbjct: 758 EECAICLDSLMAPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHGDSLIECPPEEL 817
Query: 682 DMDIAGKTLKNFTSS-KVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFK 740
+ K+ +TSS K++A R K P KS+V SQF L L+E PL+A+GF
Sbjct: 818 ACNTEKKSNMEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFV 877
Query: 741 LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPA 800
RLDGSM KKR + I+ F N G PT++L SLKA G G+NL+AASRVFL++P WNPA
Sbjct: 878 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPA 937
Query: 801 VEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRK---GKDQRE 857
E+Q DR HR+GQK++V I + IV++S+EE +L++Q+ K++LA AF K + ++
Sbjct: 938 AEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKTNASEMKQ 997
Query: 858 VSTDDLRILMSL 869
+++R L+ L
Sbjct: 998 AKINEIRTLIDL 1009
Score = 414 (150.8 bits), Expect = 1.8e-148, Sum P(2) = 1.8e-148
Identities = 98/253 (38%), Positives = 139/253 (54%)
Query: 28 MLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAV 87
+ G + ++VGL+YY+G ++ EMV L REP NPYD NA+KV N +QVGHI++ +AA
Sbjct: 59 LFGTLRGHVVGLRYYTGVVNNNEMVALQREPTNPYDKNAIKVNNVNGNQVGHIKKDLAAA 118
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQLISGND 147
LA ++D+ + +EG+VP N F +P Q+ + + E V D + + G +L
Sbjct: 119 LAYIMDNKLAQIEGVVPF--GANNTFTMPLQMTFWGKEENRKAVLDELKKHGFKL-GPAP 175
Query: 148 VSFGLS-EAMVVKERKG-------ERGVKSVDEIFKL-VDKNVXXXXXXXXXXXX--XXV 196
S G S E+ R G V+ E K DK
Sbjct: 176 KSLGFSLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTQEMEPAEA 235
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADD 256
I++ L HQK+ L W+V RENSEELPPFWE++ + N +TN+ RPE + GGI ADD
Sbjct: 236 IETPLLPHQKQALAWMVSRENSEELPPFWEQRSDLYYNTITNFSEKDRPENVHGGILADD 295
Query: 257 MGLGKTLTLLSLI 269
MGLGKTLT +++I
Sbjct: 296 MGLGKTLTAIAVI 308
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 1034 (369.0 bits), Expect = 2.9e-148, Sum P(2) = 2.9e-148
Identities = 219/532 (41%), Positives = 326/532 (61%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQDVEELKMYDLVLTTYSTLA 407
+ TLIVCP SV S W+ Q E+H + +K Y+YYG +R + V L D+VLTTY+ L+
Sbjct: 416 RATLIVCPLSVLSNWLDQFEQHIRTDVTVKVYLYYGSERNRSVSLLSEQDVVLTTYNVLS 475
Query: 408 IE-ESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ + SP+ ++W RV+LDE HV++N NA QS+ V L ++RRW+++GTPIQN D
Sbjct: 476 SDFGNKASSPLHNVKWLRVVLDEGHVVRNPNALQSKAVLELQSERRWILSGTPIQNSLKD 535
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD-----KGL 521
LF L++FL+ +PF VK +W +IQRP+ G+R GL LQ L+ I+LRRTK+ + L
Sbjct: 536 LFMLLSFLKLKPFDVKEWWSRIIQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVGGRTL 595
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQI 581
+ L + + YV LS ER+ Y+ ++G+ K +V Y G+ M NY+ VL+IL+RLRQ
Sbjct: 596 VQLPERRVFVQYVTLSGMEREKYERVKGEGKNIVGRYFQEGTFMANYADVLTILMRLRQC 655
Query: 582 CTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCC 641
C + +L + + +P T ++ L++K+ VL G D T C
Sbjct: 656 CCHPSLVGNYTAADVPG-TPSELRER--LIQKITLVLNSGSDEECAICLDSLRQPVITYC 712
Query: 642 AHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNF-TSSKV 698
AH+FCR CI + ++ K CPLCR + +L P E ++ T +N+ +SSK
Sbjct: 713 AHVFCRPCICEVIRSEKEQAKCPLCRAQIKTKELVEYPGEQAET--RSDTGENWRSSSKA 770
Query: 699 SAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIE 758
A R++ PT KS+V SQF L +LE L+ GF RLDGS+ + RA+ IE
Sbjct: 771 LALMSNLLKLRNEDPTVKSMVVSQFTGFLDVLEVALREYGFSFTRLDGSLIQRARAKAIE 830
Query: 759 EFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDV 818
+F + PG PT++L SLKA G G+NLTAAS+VF+++P WNPA E+Q +DR HR+GQ DV
Sbjct: 831 DFQDSTPGSPTIMLLSLKAGGVGLNLTAASQVFVMDPAWNPAAEDQCVDRCHRLGQSRDV 890
Query: 819 KIVRLIVRNSIEERILELQDRKKKLAREAFRRKG-KDQREVSTDDLRILMSL 869
I + IV++S+EE ++++Q +K++L +AF K +D ++ DD+R LM L
Sbjct: 891 VITKFIVKDSVEENMVKIQKKKQELVDKAFGVKNSQDAKQARIDDIRALMEL 942
Score = 435 (158.2 bits), Expect = 2.9e-148, Sum P(2) = 2.9e-148
Identities = 115/329 (34%), Positives = 163/329 (49%)
Query: 28 MLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAV 87
+ G + IVGL+YY+G ++ EMV LVREP NPYD NAV V N QVGHI++ +AA
Sbjct: 53 LFGSIQGLIVGLRYYTGAVNKGEMVSLVREPHNPYDRNAVMVANVYGSQVGHIKKELAAA 112
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL-ISGN 146
+A ++D+ + VEGIVP + N+F +P + + + E +V ++++ G L G
Sbjct: 113 MAYIMDNKLARVEGIVPY--GEKNKFSMPVILTFWGKEENREVVNNLMIGFGFNLDFRGG 170
Query: 147 DVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVXXXXXXXXXXXX-XXVIKSELFVHQ 205
L ++ K S +E+ DK + + L HQ
Sbjct: 171 SSQTSLGRDLLGLSTKLSAIPLSAEELKNAFDKLFDDLMEDKTKEMEPAEAVCTPLLSHQ 230
Query: 206 KEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTL 265
K+ L W+ RENS +LPPFWEE G + NVLTN+ KRPE + GGI ADDMGLGKTLT
Sbjct: 231 KQALSWMSSRENSNDLPPFWEENKGLYFNVLTNFAVKKRPEKVLGGILADDMGLGKTLTT 290
Query: 266 LSLIA----------LDKCAGVA-PGLTGTNSLDLNE-VEDEEXXXXXXXXXXXXXXXXX 313
++LI L+KC G + P + + V+ EE
Sbjct: 291 IALIVSNFHNGKPLPLEKCKGPSMPSAKRKQATSKEKGVDSEESQESMGLSPLKRLHDDT 350
Query: 314 XXARGKKHKTVNTKMDD-NVKGKSVGMLN 341
G + KT TK N K K+V +L+
Sbjct: 351 VRENGPQKKTKTTKKKSANTK-KAVVLLD 378
Score = 38 (18.4 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 253 FADDMGLGKTLTLLSLIA-LDKCAG 276
F D M +G T+TL +A L + AG
Sbjct: 19 FIDFMDVGSTMTLSQELANLTEDAG 43
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 1054 (376.1 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 230/553 (41%), Positives = 332/553 (60%)
Query: 333 KGKSVGMLNKSSSFMGKKI--TLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQ 388
KG SV M + G++ TLI+CP SV S WI Q+ +H + L Y+YYG DR +
Sbjct: 453 KGTSV-MESSKKCDTGERTRTTLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRIR 511
Query: 389 DVEELKMYDLVLTTYSTLAIEESWLE-SPVKKIEWWRVILDEAHVIKNANAQQSRTVTNL 447
D L D++LTTY+ L + + SP+ I+W RVILDE H I+N NAQQ++ V L
Sbjct: 512 DSTWLSKQDIILTTYNILTHDYGTKDNSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLEL 571
Query: 448 NAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVL 507
A+RRWV+TGTPIQN DL+SL++FL+ +PF+ + +W +IQRP+ G+ GL RLQ L
Sbjct: 572 EAERRWVLTGTPIQNSLKDLWSLLSFLKLKPFTDREWWHRIIQRPVTTGDEGGLRRLQSL 631
Query: 508 MSTISLRRTKD---KG--LIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAG 562
+ +I+LRRTK KG ++ L + + ++ LS+EERK+Y ++ + K + Y G
Sbjct: 632 IKSITLRRTKTSKIKGKPVLELPERKVFIQHITLSVEERKIYQSVKNEGKATIARYFTEG 691
Query: 563 SLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGE 622
+++ +Y+ VL +LLRLRQIC ++ L + S PS + L+ K+ +L G
Sbjct: 692 TVLAHYADVLGLLLRLRQICCHVHLPTNGTSSSDPSRSDTPEELRKMLVTKMKLILSSGS 751
Query: 623 DFXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPES 680
D T CAH+FC+ CI + +Q +P CPLCR + +L PPE
Sbjct: 752 DEECSICLDSLTFPVITHCAHVFCKPCICQVIQREQPHAKCPLCRSNIHGHNLLECPPEE 811
Query: 681 SDMDIAGKTLKNFTSS-KVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGF 739
D K+ +TSS K++A R K P KS+V SQF L L+E PL+A+GF
Sbjct: 812 LACDSDNKSDMEWTSSSKINALMNALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGF 871
Query: 740 KLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNP 799
RLDGSM KKR + I+ F N G PT++L SLKA G G+NL AASRVFL++P WNP
Sbjct: 872 VFTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNP 931
Query: 800 AVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKD---QR 856
A E+Q DR HR+GQK++V I + IV++S+EE +L++Q+ K++LA AF K D +
Sbjct: 932 AAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNMKRELAAGAFGTKKTDADEMK 991
Query: 857 EVSTDDLRILMSL 869
+ +++R L+ L
Sbjct: 992 QAKINEIRTLIDL 1004
Score = 410 (149.4 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 101/280 (36%), Positives = 150/280 (53%)
Query: 28 MLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAV 87
+ G + +VG++YY+G ++ EMV L REP NPYD NA+KV N +QVGH++R +AA
Sbjct: 58 LFGTMRGQVVGIRYYTGVVNNNEMVALEREPNNPYDKNAIKVNNVNGNQVGHLKRDLAAA 117
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL----- 142
LA ++D+ + VEG+VP S N F +P + + + E +V D + + G +L
Sbjct: 118 LAYIMDNKLAQVEGVVPFGAS--NTFTMPLHMTFWGKEENREVVLDHLKKHGFKLGPTPK 175
Query: 143 ISGNDV--SFGLSEAMVVKERKGERGVKSVDEIFKL-VDKNVXXXXXXXXXXXX--XXVI 197
G+ + ++G A R V+ E K DK +
Sbjct: 176 TVGSSLENTWGSGRAGPSYSRPVHVAVQMTTEQLKTEFDKLFEDLKEDDRTIEMEPAEAV 235
Query: 198 KSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDM 257
++ L HQK+ L W++ RENS+ELPPFWE + + N +TN+ +RPE + GGI ADDM
Sbjct: 236 ETPLLPHQKQALAWMIARENSKELPPFWELRNDLYYNTITNFSVKERPENVHGGILADDM 295
Query: 258 GLGKTLTLLSLIALDKCAGVAP--GLTGTNSLDLNEVEDE 295
GLGKTLT +++I + G P G G S E +DE
Sbjct: 296 GLGKTLTAIAVILTNFDDG-RPLLGKRGKESHPGKEYKDE 334
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 1057 (377.1 bits), Expect = 5.3e-147, Sum P(2) = 5.3e-147
Identities = 226/534 (42%), Positives = 322/534 (60%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQDVEELKMYDLVLTTYSTLA 407
+ TLI+CP SV S WI Q +H + L Y+YYG DR +D L D+VLTTY+ L
Sbjct: 478 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRVRDPALLSKQDIVLTTYNILT 537
Query: 408 IEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ +SP+ I W RVILDE H I+N NAQQ++ V +L A+RRWV+TGTPIQN D
Sbjct: 538 HDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKD 597
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD---KG--L 521
L+SL++FL+ +PF + +W IQRP+ G+ GL RLQ L+ I+LRRTK KG +
Sbjct: 598 LWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPV 657
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQI 581
+ L + + ++ LS EERK+Y ++ + + Y N G+++ +Y+ VL +LLRLRQI
Sbjct: 658 LELPERKVFIQHITLSDEERKIYQSVKNDGRATIGRYFNEGTVLAHYADVLGLLLRLRQI 717
Query: 582 CTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCC 641
C + L + V S PS L+KK+ +L G D T C
Sbjct: 718 CCHTHLLTNAVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLTVPVITHC 777
Query: 642 AHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSS-KV 698
AH+FC+ CI + +Q+ +P CPLCR+ + +L PPE D K+ +TSS K+
Sbjct: 778 AHVFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNMEWTSSSKI 837
Query: 699 SAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIE 758
+A R K P KS+V SQF L L+E PL+A+GF RLDGSM KKR + I+
Sbjct: 838 NALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQ 897
Query: 759 EFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDV 818
F N G PT++L SLKA G G+NL+AASRVFL++P WNPA E+Q DR HR+GQK++V
Sbjct: 898 CFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEV 957
Query: 819 KIVRLIVRNSIEERILELQDRKKKLAREAFRRK---GKDQREVSTDDLRILMSL 869
I + IV++S+EE +L++Q+ K++LA AF K + ++ +++R L+ L
Sbjct: 958 IITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKTNASEMKQAKINEIRTLIDL 1011
Score = 400 (145.9 bits), Expect = 5.3e-147, Sum P(2) = 5.3e-147
Identities = 94/253 (37%), Positives = 139/253 (54%)
Query: 28 MLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAV 87
+ G + ++VGL+YY+G ++ EMV L REP NPYD NA+KV N +QVGH+++ +AA
Sbjct: 59 LFGTLRGHVVGLRYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGHLKKDLAAA 118
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL-ISGN 146
LA ++D+ + VEG+VP N F +P + + + E V D + + G +L +
Sbjct: 119 LAYIMDNKLAQVEGVVPF--GANNAFTMPLHMTFWGKEENKKAVLDQLKKHGFKLGPAPK 176
Query: 147 DVSFGLSEAMVVKERKG-------ERGVKSVDEIFKL-VDKNVXXXXXXXXXXXX--XXV 196
+ F L E+ R G V+ E K DK
Sbjct: 177 TLGFSL-ESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEA 235
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADD 256
+++ L HQK+ L W+V RENS+ELPPFWE++ + N +TN+ RPE + GGI ADD
Sbjct: 236 VETPLLPHQKQALAWMVSRENSKELPPFWEQRSDLYYNTITNFSEKDRPENVHGGILADD 295
Query: 257 MGLGKTLTLLSLI 269
MGLGKTLT +++I
Sbjct: 296 MGLGKTLTAIAVI 308
Score = 37 (18.1 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 384 GDRTQDVEELKMYDLVLTTYSTLAIEESWLE 414
G + DVEE L++ S L+ +W++
Sbjct: 467 GSKKTDVEERPRTTLIICPLSVLS---NWID 494
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 1036 (369.7 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
Identities = 221/534 (41%), Positives = 320/534 (59%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQDVEELKMYDLVLTTYSTLA 407
+ TLI+CP SV S WI Q +H + L Y+YYG DR +D L D++LTTY+ L
Sbjct: 470 RATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTYNILT 529
Query: 408 IEESWLE-SPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ + SP+ I+W RVILDE H I+N NAQQ++ V L A+RRWV+TGTPIQN D
Sbjct: 530 HDYGTKDDSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKD 589
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD---KG--L 521
L+SL++FL+ +PF + +W +IQRP+ G+ GL RLQ L+ I+LRRTK KG +
Sbjct: 590 LWSLLSFLKLKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPV 649
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQI 581
+ L + + ++ LS EERK+Y ++ + K + Y G+++ +Y+ VL +LLRLRQI
Sbjct: 650 LELPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQI 709
Query: 582 CTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCC 641
C + L + + S PS + L++K+ +L G D T C
Sbjct: 710 CCHTHLLTNGMSSSGPSRSDTPEELRKMLIEKMKIILSSGSDEECAICLDSLTFPVITHC 769
Query: 642 AHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNF-TSSKV 698
AH+FC+ CI + + +P CPLCR+ + +L PPE D ++ + +SSK+
Sbjct: 770 AHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLECPPEELACDSDKESSMEWKSSSKI 829
Query: 699 SAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIE 758
+A R K P KS+V SQF L L+E PL+A+GF RLDGSM KKR + I+
Sbjct: 830 NALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQ 889
Query: 759 EFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDV 818
F N G PT++L SLKA G G+NL AASRVFL++P WNPA E+Q DR HR+GQK++V
Sbjct: 890 RFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEV 949
Query: 819 KIVRLIVRNSIEERILELQDRKKKLAREAFRRK---GKDQREVSTDDLRILMSL 869
I + IV++S+EE +L++Q+ K+ LA AF K D ++ +++R L+ L
Sbjct: 950 IITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTDANDMKQAKINEIRTLIDL 1003
Score = 416 (151.5 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
Identities = 93/252 (36%), Positives = 144/252 (57%)
Query: 28 MLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAV 87
+ G + +VGL+YY+G ++ EMV L REP NPYD NA+KV N +QVGHI+R +AA
Sbjct: 59 LFGTMRGQVVGLRYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGHIKREIAAA 118
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL----- 142
+A ++D+ + VEG+VP S N F +P + + + E ++V + + + G +L
Sbjct: 119 VAYIMDNKLAQVEGVVPFGAS--NTFTMPLYMTFWGKEENRNVVLEQLKKHGFKLGPTPK 176
Query: 143 ISGNDV--SFGLSEAMVVKERKGERGVK-SVDEIFKLVDKNVXXXXXXXXXXXX--XXVI 197
G+ + ++G A R V+ + D++ DK I
Sbjct: 177 TLGSSLENAWGSGRAGPSYSRPAHVAVQMTTDQLKTEFDKLFEDLKEDDRTVEMEPAEAI 236
Query: 198 KSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDM 257
++ L HQK+ L W++ RENS+ELPPFWE++ + N +TN+ +RPE + GGI ADDM
Sbjct: 237 ETPLLPHQKQALAWMIARENSKELPPFWEQRNDLYYNTITNFSVKERPENVHGGILADDM 296
Query: 258 GLGKTLTLLSLI 269
GLGKTLT +++I
Sbjct: 297 GLGKTLTAIAVI 308
Score = 40 (19.1 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDY-INAGSLMRNYSTV 571
+ I Y+E S E EL K KG +++ +N S ++ S V
Sbjct: 385 RKISVQYIESSDSEEIETSELPQKMKGKLKNVQLNTKSRVKGSSKV 430
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 1050 (374.7 bits), Expect = 3.7e-146, Sum P(2) = 3.7e-146
Identities = 228/552 (41%), Positives = 329/552 (59%)
Query: 333 KGKSVGMLNKSSSFMGK-KITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQD 389
KG S +K + + + TLI+CP SV S WI Q +H + L Y+YYG DR +D
Sbjct: 456 KGASAVEGSKKTDIEDRPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRD 515
Query: 390 VEELKMYDLVLTTYSTLAIEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLN 448
L D+VLTTY+ L + +SP+ I W RVILDE H I+N NAQQ++ V +L
Sbjct: 516 PALLSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLE 575
Query: 449 AKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLM 508
A+RRWV+TGTPIQN DL+SL++FL+ +PF + +W IQRP+ G+ GL RLQ L+
Sbjct: 576 AERRWVLTGTPIQNSLKDLWSLLSFLKLKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLI 635
Query: 509 STISLRRTKD---KG--LIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGS 563
I+LRRTK KG ++ L + + ++ LS EERK+Y ++ + + + Y N G+
Sbjct: 636 KNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGT 695
Query: 564 LMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGED 623
++ +Y+ VL +LLRLRQIC + L + S PS L++K+ +L G D
Sbjct: 696 VLAHYADVLGLLLRLRQICCHTHLLTNAGSSSGPSGNDTPEELRKKLIRKMKLILSSGSD 755
Query: 624 FXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESS 681
T CAH+FC+ CI + +Q+ +P CPLCR+ + +L PPE
Sbjct: 756 EECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEEL 815
Query: 682 DMDIAGKTLKNFTSS-KVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFK 740
D K+ +TSS K++A R K P KS+V SQF L L+E PL+A+GF
Sbjct: 816 ACDTEKKSNTEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFV 875
Query: 741 LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPA 800
RLDGSM KKR + I+ F N G PT++L SLKA G G+NL+AASRVFL++P WNPA
Sbjct: 876 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPA 935
Query: 801 VEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRK---GKDQRE 857
E+Q DR HR+GQK++V I + IV++S+EE +L++Q+ K++LA AF K + ++
Sbjct: 936 AEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKTNANEMKQ 995
Query: 858 VSTDDLRILMSL 869
+++R L+ L
Sbjct: 996 AKINEIRTLIDL 1007
Score = 399 (145.5 bits), Expect = 3.7e-146, Sum P(2) = 3.7e-146
Identities = 93/253 (36%), Positives = 139/253 (54%)
Query: 28 MLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAV 87
+ G + ++VGL+YY+G ++ EMV L REP NPYD NA+KV N +QVGH+++ +AA
Sbjct: 59 LFGTLRGHVVGLRYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGHLKKDLAAA 118
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL-ISGN 146
LA ++D+ + +EG+VP N F +P + + + E V D + + G +L +
Sbjct: 119 LAYIMDNKLAQIEGVVPF--GANNAFTMPLHMTFWGKEENRKAVLDQLKKHGFKLGPAPK 176
Query: 147 DVSFGLSEAMVVKERKG-------ERGVKSVDEIFKL-VDKNVXXXXXXXXXXXX--XXV 196
+ F L E+ R G V+ E K DK
Sbjct: 177 TLGFSL-ESSWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEA 235
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADD 256
I++ L HQK+ L W+V RENS++LPPFWE++ + N +TN+ RPE + GGI ADD
Sbjct: 236 IETPLLPHQKQALAWMVSRENSKDLPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADD 295
Query: 257 MGLGKTLTLLSLI 269
MGLGKTLT +++I
Sbjct: 296 MGLGKTLTAIAVI 308
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 1050 (374.7 bits), Expect = 9.8e-146, Sum P(2) = 9.8e-146
Identities = 223/534 (41%), Positives = 325/534 (60%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQDVEELKMYDLVLTTYSTLA 407
+ TLI+CP SV S WI Q +H + L Y+YYG DR ++ L D+VLTTY+ L
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILT 535
Query: 408 IEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ +SP+ I W RVILDE H I+N NAQQ++ V +L ++RRWV+TGTPIQN D
Sbjct: 536 HDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKD 595
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD---KG--L 521
L+SL++FL+ +PF + +W IQRP+ G+ GL RLQ L+ I+LRRTK KG +
Sbjct: 596 LWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPV 655
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQI 581
+ L + + ++ LS EERK+Y ++ + + + Y N G+++ +Y+ VL +LLRLRQI
Sbjct: 656 LELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQI 715
Query: 582 CTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCC 641
C + L + V S PS L++K+ +L G D T C
Sbjct: 716 CCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHC 775
Query: 642 AHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSS-KV 698
AH+FC+ CI + +Q+ +P CPLCR+ + + +L PPE D K+ +TSS K+
Sbjct: 776 AHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKI 835
Query: 699 SAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIE 758
+A R K P KS+V SQF L L+E PL+A+GF RLDGSM KKR + I+
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895
Query: 759 EFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDV 818
F N G PT++L SLKA G G+NL+AASRVFL++P WNPA E+Q DR HR+GQK++V
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEV 955
Query: 819 KIVRLIVRNSIEERILELQDRKKKLAREAFRRK---GKDQREVSTDDLRILMSL 869
I + IV++S+EE +L++Q++K++LA AF K + ++ +++R L+ L
Sbjct: 956 IITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
Score = 395 (144.1 bits), Expect = 9.8e-146, Sum P(2) = 9.8e-146
Identities = 90/252 (35%), Positives = 136/252 (53%)
Query: 28 MLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAV 87
+ G + ++VGL+YY+G ++ EMV L R+P NPYD NA+KV N +QVGH+++ +A
Sbjct: 59 LFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGA 118
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL----- 142
LA ++D+ + +EG+VP N F +P + + + E V D + + G +L
Sbjct: 119 LAYIMDNKLAQIEGVVPF--GANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPK 176
Query: 143 -ISGN-DVSFGLSEAMVVKERKGERGVKSVDEIFKL-VDKNVXXXXXXXXXXXX--XXVI 197
+ N + +G A V+ E K DK I
Sbjct: 177 TLGFNLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAI 236
Query: 198 KSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDM 257
++ L HQK+ L W+V RENS+ELPPFWE++ + N +TN+ RPE + GGI ADDM
Sbjct: 237 ETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDM 296
Query: 258 GLGKTLTLLSLI 269
GLGKTLT +++I
Sbjct: 297 GLGKTLTAIAVI 308
Score = 40 (19.1 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 20/91 (21%), Positives = 38/91 (41%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLK--TYMYY 383
+++ +KGK + +++ K + V F+ +T T MLK
Sbjct: 406 SELPQKMKGKLKNVQSETKG-RAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVE 464
Query: 384 GDRTQDVEELKMYDLVLTTYSTLAIEESWLE 414
G + DVEE L++ S L+ +W++
Sbjct: 465 GSKKTDVEERPRTTLIICPLSVLS---NWID 492
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 712 (255.7 bits), Expect = 1.7e-101, Sum P(3) = 1.7e-101
Identities = 186/545 (34%), Positives = 285/545 (52%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGML-KTYMYYGDRTQDVEELKMYDLVLTTYSTLAI 408
K TLI+ P + S W Q++EHT P + +Y+G ++ L YD+V+T+Y TLA
Sbjct: 442 KATLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKEDANLDHYDVVVTSYGTLAT 501
Query: 409 E---ESWLESPVK---KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
E ES +P K ++W RV+LDE H I+N ++ L A RW +TGTPI N
Sbjct: 502 EYKTES-KATPQKGLFSVKWRRVVLDEGHTIRNPRSKGFSAACALRADSRWALTGTPIVN 560
Query: 463 GSFDLFSLMAFLQF----EPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD 518
DL+S + FL E F+V + S++ RPL + LQ LMSTI LRR KD
Sbjct: 561 TLKDLYSQIRFLGLTGGLEDFAV---FNSVLIRPLMSDDPDSRLLLQALMSTICLRRRKD 617
Query: 519 KGLIGLQPKTIEKYYVELSLE--ERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
G + L+ T+ + + E++ YD + +AKG++ D+ + YS +L ++L
Sbjct: 618 MGFVNLRLPTLTSRVLRIKFHPHEKEKYDMFQSEAKGMLLDFKSNNKTGTTYSHLLEVIL 677
Query: 577 RLRQICTNLALCPSDVRSIIPS-NTIEDVSNNPDLLKKLVEVLQ---DGEDFXXXXXXXX 632
RLRQ+C + AL + + + + + V PD +K L ++LQ + ++
Sbjct: 678 RLRQVCNHWALAKNRLDKLAAILDKHQTVPLTPDNIKALQDMLQIRIESQEICPICLDIL 737
Query: 633 XXXXXXTCCAHIFCRSCILKTL--QHTKPCCPLCRHPLLQSDLFSSPP----ESSDMDIA 686
T CAH F CI + + QH CP+CR + +P E++D D++
Sbjct: 738 ETPVI-TACAHAFDHDCIEQVIVRQHK---CPICRAEIENKSSLVAPAADLGENTD-DVS 792
Query: 687 GKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDG 746
+ SSK+ A + TK+V+FSQ+ L L+E LQ AG + R+DG
Sbjct: 793 ADP--DNPSSKIEALIKILTA-HGQVEATKTVIFSQWTSFLTLVEPHLQNAGIQFARIDG 849
Query: 747 SMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAM 806
M + R + + F P TVLLASL G+NL AA++ L + WW PA+E+QA+
Sbjct: 850 KMTSIARDRSMRRFSTD-PKC-TVLLASLSVCSVGLNLVAANQAILADSWWAPAIEDQAV 907
Query: 807 DRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGK---DQREVSTDDL 863
DRV+R+GQ + + RL++ +SIE+R+L +Q++K+KL AFR K D R DL
Sbjct: 908 DRVYRLGQTRETTVWRLVMEDSIEDRVLAIQEQKRKLMLAAFREKASKKVDDRATRVADL 967
Query: 864 RILMS 868
L++
Sbjct: 968 EKLLT 972
Score = 166 (63.5 bits), Expect = 1.7e-101, Sum P(3) = 1.7e-101
Identities = 52/142 (36%), Positives = 78/142 (54%)
Query: 30 GFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLA 89
G + IVG++YY GT + E V L REP N YD NA++V N Q+GHI R++AA LA
Sbjct: 140 GDLNTKIVGVRYYRGTATIGEHVVLKREPHNQYDRNAIRVDNVMGTQIGHIPRNMAAKLA 199
Query: 90 PLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIF--TRLEMFSIVKDVILEGGLQLISGND 147
+D+ +++VEG++ T G F P + ++ + LE +K +++ L L N
Sbjct: 200 TYMDNRLLVVEGVL--TGVIG-AFDCPIVLKLYGPSDLERREALKQRMVQDKLPL---NH 253
Query: 148 VSFG-LSEAMVVKERKGERGVK 168
+ E V KER E+ VK
Sbjct: 254 LKKAERDEKKVQKER--EKAVK 273
Score = 162 (62.1 bits), Expect = 1.7e-101, Sum P(3) = 1.7e-101
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 197 IKSELFVHQKEGLGWLVRREN------SEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRG 250
+ + L +Q++GL W++ +EN ++ W+++G F N+ TN+ T P G
Sbjct: 351 LSTTLLPYQRQGLAWMISKENPGLPTSDNDVVQLWKKEGNKFTNIATNFSTTAPPSLASG 410
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI ADDMGLGKT+ ++SLI
Sbjct: 411 GILADDMGLGKTIQIISLI 429
Score = 37 (18.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 225 WEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALD 272
W G VN L + ++ R L GG+ +D + ++ + L++ D
Sbjct: 551 WALTGTPIVNTLKDLYSQIRFLGLTGGL--EDFAVFNSVLIRPLMSDD 596
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 182/419 (43%), Positives = 255/419 (60%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAF 473
+SP+ I W RVILDE H I+N NAQQ++ V +L ++RRWV+TGTPIQN DL+SL++F
Sbjct: 7 DSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSF 66
Query: 474 LQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD---KG--LIGLQPKT 528
L+ +PF + +W IQRP+ G+ GL RLQ L+ I+LRRTK KG ++ L +
Sbjct: 67 LKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERK 126
Query: 529 IEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALC 588
+ ++ LS EERK+Y ++ + + + Y N G+++ +Y+ VL +LLRLRQIC + L
Sbjct: 127 VFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLL 186
Query: 589 PSDVRSIIPSNTIEDVSNNPDLLKKLVE----VLQDGEDFXXXXXXXXXXXXXXTCCAHI 644
+ V S PS +L KKL+ +L G D T CAH+
Sbjct: 187 TNAVSSNGPSAFSLGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHV 246
Query: 645 FCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSS-KVSAX 701
FC+ CI + +Q+ +P CPLCR+ + + +L PPE D K+ +TSS K++A
Sbjct: 247 FCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINAL 306
Query: 702 XXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFG 761
R K P KS+V SQF L L+E PL+A+GF RLDGSM KKR + I+ F
Sbjct: 307 MHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQ 366
Query: 762 NPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
N G PT++L SLKA G G+NL+AASRVFL++P WNPA E+Q DR HR+GQK++V I
Sbjct: 367 NTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVII 425
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 603 (217.3 bits), Expect = 1.4e-75, Sum P(4) = 1.4e-75
Identities = 155/468 (33%), Positives = 236/468 (50%)
Query: 422 WWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSV 481
WWR+ILDEAH IKN +++ + L RW +TGTP+QN +L+SL+ FL PF+
Sbjct: 378 WWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFND 437
Query: 482 KSYWQSLIQRPLAQGNRKGL-SRLQVLMSTISLRRTKDK-----------GLIGLQPKTI 529
+S W+ I PL QG + RL++L+S I LRRTK G + L + +
Sbjct: 438 QSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLV 497
Query: 530 EKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN-LALC 588
K + ER Y L + + +++N+G L +NY+ +L +LLRLRQ C + +L
Sbjct: 498 YKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQSLN 557
Query: 589 PSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRS 648
+ + N ++ +N L QD +D + C C +
Sbjct: 558 FQFEQDVDAFNALDGAANTNKLASD-----QDVDDLANLLETVEIGSRKKSFCT--ICMA 610
Query: 649 CILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXX 708
+ H K C C + D P KTL + SSK+
Sbjct: 611 ELPPDF-HEKKCKD-CSRNFKELDKGIQDPND-------KTL--YKSSKIREILKILSLD 659
Query: 709 RDKKPTT-----KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNP 763
++ T K+++FSQF L +++ L+ AG +R DG MN + R + ++ +
Sbjct: 660 EQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSD 719
Query: 764 GPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRL 823
G VLL SLK G+NLT ASRV L + WWNPA+EEQA+DRVHRIGQ+ DV + +L
Sbjct: 720 S--GTQVLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKL 777
Query: 824 IVRNSIEERILELQDRKKKLAREAFRRKGKD---QREVSTDDLRILMS 868
+V N+IEE+I+ELQ+ K+ LA++A K ++++ +DL L +
Sbjct: 778 VVENTIEEKIVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFLFN 825
Score = 78 (32.5 bits), Expect = 1.4e-75, Sum P(4) = 1.4e-75
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAI 408
K TL+V P S+ W ++++ + L +Y+G R + ++ + YD+V+TTY L
Sbjct: 289 KSTLVVAPLSLIKQWESEVQTKS---KLTAIVYHGASRYKLLKVIHEYDVVITTYQILVS 345
Query: 409 EESWL 413
E W+
Sbjct: 346 E--WV 348
Score = 77 (32.2 bits), Expect = 1.4e-75, Sum P(4) = 1.4e-75
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
GGI ADDMGLGKT+ +++LI
Sbjct: 257 GGILADDMGLGKTIQMIALI 276
Score = 44 (20.5 bits), Expect = 1.4e-75, Sum P(4) = 1.4e-75
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 201 LFVHQKEGLGWLVRRE 216
L HQ +GL WL RE
Sbjct: 233 LLDHQVQGLTWLKSRE 248
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 664 (238.8 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 188/578 (32%), Positives = 282/578 (48%)
Query: 327 KMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-D 385
K + K V + S+ + TLI+CP S+ W +++ G L+ Y+Y+G +
Sbjct: 602 KTEKGSKKLEVWLSRNDSTVIPSCSTLIICPASLIHHWKKEIDRRVSFGKLRVYLYHGPN 661
Query: 386 RTQDVEELKMYDLVLTTYSTLAIE--ESWLE-----------------SPVKKIEWWRVI 426
R + E L YD+V+TTYS L+ E S E SP+ ++ W RVI
Sbjct: 662 REKHAEVLSEYDIVVTTYSLLSKEVPTSKEEGEFPAKDHEVGSGSSACSPLLRVAWARVI 721
Query: 427 LDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQ 486
LDEAH IKN Q S V L A RW VTGTPIQN D++SL+ FL+ PF W+
Sbjct: 722 LDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLRCSPFDEYKVWK 781
Query: 487 SLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEE 540
+ +KG RL +L ++ LRRTKD K L+ L ++++ + ++LS EE
Sbjct: 782 YQVDN----NTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSAEE 837
Query: 541 RKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNT 600
+ +Y+ L +++ +Q Y+ +N S + ++ + C S + S +
Sbjct: 838 QSVYNVLFARSRSTLQSYLKRQE-QKNESREHAGSNPFEKVAQDFG-C-SQKEFLASSQS 894
Query: 601 IEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQHTKPC 660
VS+ +L L+ + Q CC H+ L
Sbjct: 895 AVQVSSTAHVLSMLLRLRQ--------------------CCCHLSLLKVALDQANLANEG 934
Query: 661 CPLCRHPLLQSDLFS---SPPESSDMDIAGKTLKN--FT----SSKVSAXXXXXXXXRDK 711
L L + S +P S + + G F S+KVS +
Sbjct: 935 LSLSIEEQLSALTLSELQTPDSKSTVYLNGTAFNTDLFEISKESTKVSHLLAELKTIQSC 994
Query: 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVL 771
T KSVV SQ+ ML ++ LQ G K LDGS+N K+R V+EEF N P GP V+
Sbjct: 995 SETEKSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNN-NPKGPQVM 1053
Query: 772 LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831
L SL A G G+NLT + +FLL+ WNPA+E+QA DR++R+GQK+DV I R + ++EE
Sbjct: 1054 LVSLLAGGVGLNLTGGNHLFLLDMHWNPALEDQACDRIYRVGQKKDVVIHRFVCEGTVEE 1113
Query: 832 RILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+IL+LQ RKK LA++ KG+ + ++ DL+ L +
Sbjct: 1114 KILQLQTRKKGLAQQVLAGKGETSK-LTLADLKTLFGI 1150
Score = 88 (36.0 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDK 273
GGI ADDMGLGKTLT+++LI K
Sbjct: 576 GGILADDMGLGKTLTMIALILTQK 599
Score = 54 (24.1 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 197 IKSELFVHQKEGLGWLVRREN 217
+K L +HQ++ L WL+ RE+
Sbjct: 551 LKVPLLLHQRQALAWLLWRES 571
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 664 (238.8 bits), Expect = 3.0e-74, Sum P(3) = 3.0e-74
Identities = 188/578 (32%), Positives = 282/578 (48%)
Query: 327 KMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-D 385
K + K V + S+ + TLI+CP S+ W +++ G L+ Y+Y+G +
Sbjct: 619 KTEKGSKKLEVWLSRNDSTVIPSCSTLIICPASLIHHWKKEIDRRVSFGKLRVYLYHGPN 678
Query: 386 RTQDVEELKMYDLVLTTYSTLAIE--ESWLE-----------------SPVKKIEWWRVI 426
R + E L YD+V+TTYS L+ E S E SP+ ++ W RVI
Sbjct: 679 REKHAEVLSEYDIVVTTYSLLSKEVPTSKEEGEFPAKDHEVGSGSSACSPLLRVAWARVI 738
Query: 427 LDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQ 486
LDEAH IKN Q S V L A RW VTGTPIQN D++SL+ FL+ PF W+
Sbjct: 739 LDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLRCSPFDEYKVWK 798
Query: 487 SLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEE 540
+ +KG RL +L ++ LRRTKD K L+ L ++++ + ++LS EE
Sbjct: 799 YQVDN----NTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSAEE 854
Query: 541 RKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNT 600
+ +Y+ L +++ +Q Y+ +N S + ++ + C S + S +
Sbjct: 855 QSVYNVLFARSRSTLQSYLKRQE-QKNESREHAGSNPFEKVAQDFG-C-SQKEFLASSQS 911
Query: 601 IEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQHTKPC 660
VS+ +L L+ + Q CC H+ L
Sbjct: 912 AVQVSSTAHVLSMLLRLRQ--------------------CCCHLSLLKVALDQANLANEG 951
Query: 661 CPLCRHPLLQSDLFS---SPPESSDMDIAGKTLKN--FT----SSKVSAXXXXXXXXRDK 711
L L + S +P S + + G F S+KVS +
Sbjct: 952 LSLSIEEQLSALTLSELQTPDSKSTVYLNGTAFNTDLFEISKESTKVSHLLAELKTIQSC 1011
Query: 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVL 771
T KSVV SQ+ ML ++ LQ G K LDGS+N K+R V+EEF N P GP V+
Sbjct: 1012 SETEKSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNN-NPKGPQVM 1070
Query: 772 LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831
L SL A G G+NLT + +FLL+ WNPA+E+QA DR++R+GQK+DV I R + ++EE
Sbjct: 1071 LVSLLAGGVGLNLTGGNHLFLLDMHWNPALEDQACDRIYRVGQKKDVVIHRFVCEGTVEE 1130
Query: 832 RILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+IL+LQ RKK LA++ KG+ + ++ DL+ L +
Sbjct: 1131 KILQLQTRKKGLAQQVLAGKGETSK-LTLADLKTLFGI 1167
Score = 88 (36.0 bits), Expect = 3.0e-74, Sum P(3) = 3.0e-74
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDK 273
GGI ADDMGLGKTLT+++LI K
Sbjct: 593 GGILADDMGLGKTLTMIALILTQK 616
Score = 54 (24.1 bits), Expect = 3.0e-74, Sum P(3) = 3.0e-74
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 197 IKSELFVHQKEGLGWLVRREN 217
+K L +HQ++ L WL+ RE+
Sbjct: 568 LKVPLLLHQRQALAWLLWRES 588
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 398 (145.2 bits), Expect = 8.1e-73, Sum P(4) = 8.1e-73
Identities = 96/271 (35%), Positives = 143/271 (52%)
Query: 412 WLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLM 471
+L P+ K+ W+RV+LDEA IKN Q +R L AKRRW ++GTPIQN DL+S
Sbjct: 777 FLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYF 836
Query: 472 AFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD-----KGLIGLQP 526
FL+++P+S + S I+ P+ + KG +LQ ++ T+ LRRTK K +I L P
Sbjct: 837 RFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPP 896
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLA 586
K+IE V+ ++EER Y +LE +++ ++Y AG++ +NY +L +LLRLRQ C +
Sbjct: 897 KSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPL 956
Query: 587 LCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFC 646
L + S T E ++ L KK ++ D + C H+FC
Sbjct: 957 LVNGEY-----SFTWE---SSVGLAKKQIQ--SDASLAICGICNDAPEDAVASVCGHVFC 1006
Query: 647 RSCILKTLQHTKPCCPL--CRHPLLQSDLFS 675
+ CI + L CP C L S L S
Sbjct: 1007 KQCIYERLTGDSNHCPFANCNVRLTISSLSS 1037
Score = 316 (116.3 bits), Expect = 8.1e-73, Sum P(4) = 8.1e-73
Identities = 66/153 (43%), Positives = 99/153 (64%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K++VFSQ+ KML LLE L ++ + RLDG+M+ R + +++F N P TV++ SL
Sbjct: 1125 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDF-NTLPE-VTVMIMSL 1182
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA+ G+N+ AA V +L+ WWNP E+QA+DR HRIGQ V +VR V++++E+RIL
Sbjct: 1183 KAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILA 1242
Query: 836 LQDRKKKLAREAFRR--KGKDQREVSTDDLRIL 866
LQ +K+ + AF KG Q ++ +DL L
Sbjct: 1243 LQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYL 1275
Score = 159 (61.0 bits), Expect = 8.1e-73, Sum P(4) = 8.1e-73
Identities = 51/166 (30%), Positives = 80/166 (48%)
Query: 247 PLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEXXXXXXXXXX 306
P GGI ADD GLGKT++ ++LI ++ + A + ++ ++E E
Sbjct: 576 PCSGGILADDQGLGKTVSTIALILKER-SKPAQACEESTKKEIFDLESE----------T 624
Query: 307 XXXXXXXXXARGKKHKTVNTKMDDN-VKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWI 365
R K + ++N V G SVG + + G TL+VCP SV W
Sbjct: 625 GECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKVTGRPA-AG---TLVVCPTSVMRQWA 680
Query: 366 TQLEEH-TVPGMLKTYMYYGD-RTQDVEELKMYDLVLTTYSTLAIE 409
+L + T L +Y+G RT+D EL YD+V+TT+S +++E
Sbjct: 681 DELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSME 726
Score = 44 (20.5 bits), Expect = 8.1e-73, Sum P(4) = 8.1e-73
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 196 VIKSELFVHQKEGLGWLVRRENS 218
V+ L HQ+ L W+ ++E S
Sbjct: 551 VLTVPLLRHQRIALSWMAQKETS 573
Score = 42 (19.8 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 322 KTVNTKMDDNVKGKSVGM-LNKSSSFM 347
K++ T DNV G VG+ N +SS M
Sbjct: 160 KSMLTPYFDNVTGYGVGLGANHNSSAM 186
Score = 42 (19.8 bits), Expect = 5.0e-35, Sum P(4) = 5.0e-35
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 664 CRHPLLQSDLFSSPPESSDMDIAGKTLKNFTS 695
C HPLL + +S ESS + +A K +++ S
Sbjct: 952 CDHPLLVNGEYSFTWESS-VGLAKKQIQSDAS 982
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 356 (130.4 bits), Expect = 1.7e-70, Sum P(5) = 1.7e-70
Identities = 75/173 (43%), Positives = 110/173 (63%)
Query: 694 TSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR 753
+S+K+ + +P +K ++FSQ+ ML LLE PL F+ +RLDG + K+R
Sbjct: 1668 SSTKIDSLLDELNKVFKNEPDSKCLIFSQWTSMLDLLEYPLNLNQFQFVRLDGKIPQKQR 1727
Query: 754 AQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIG 813
I+ F P + L S+KA G G+NL AAS VFL++PWWNP+ EEQA+DRV+RIG
Sbjct: 1728 EVAIKRFKEE-PN-VKIFLISIKAGGLGLNLVAASHVFLMDPWWNPSTEEQAIDRVYRIG 1785
Query: 814 QKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
Q ++V ++R ++++SIEERIL LQ KK LA+EA K R ++L++L
Sbjct: 1786 QNKNVNVIRFLIKDSIEERILNLQKSKKDLAKEALNTMKKQTR---IEELKML 1835
Score = 328 (120.5 bits), Expect = 1.7e-70, Sum P(5) = 1.7e-70
Identities = 80/200 (40%), Positives = 116/200 (58%)
Query: 415 SPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFL 474
S + ++W+RV+LDEAH IK + + S+ L + RW VTGTPIQN DLFSL+ FL
Sbjct: 1115 SGIHSVKWFRVVLDEAHTIKERSTRTSKATYALESIIRWCVTGTPIQNKLDDLFSLLHFL 1174
Query: 475 QFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL-----IGLQPKTI 529
+ EPF S+W I +P + G SRL+VL+S I LRR KD+ + + L +TI
Sbjct: 1175 RVEPFHNYSWWNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQKINNTPILKLPDRTI 1234
Query: 530 EKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCP 589
S EE ++Y +L AK + +GSL++NY+ VL +LLRLRQ+C + P
Sbjct: 1235 MIKRDIFSEEEEQIYQDLWKTAKTKFNNLFQSGSLLKNYAHVLEMLLRLRQVCDH----P 1290
Query: 590 SDVRSIIPSNTIEDVSNNPD 609
V+ +N +D ++N D
Sbjct: 1291 YLVQKKQDNNN-DDAADNND 1309
Score = 129 (50.5 bits), Expect = 1.7e-70, Sum P(5) = 1.7e-70
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 341 NKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLV 399
N ++ TLIVCP SV W +++ +T P L Y+Y+G +R +D L +D++
Sbjct: 933 NNTNQVQQSNCTLIVCPVSVLQQWHSEIINNTNPS-LNVYIYHGPNRNRDRSFLMKHDII 991
Query: 400 LTTYSTLAIEES 411
LTTY+TL E +
Sbjct: 992 LTTYTTLVAEHN 1003
Score = 86 (35.3 bits), Expect = 1.7e-70, Sum P(5) = 1.7e-70
Identities = 30/106 (28%), Positives = 49/106 (46%)
Query: 168 KSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENSEELPPFWEE 227
KS D +FK +++ K L +Q++ L W+ RE SE P EE
Sbjct: 814 KSTDNLFKQQIESIITETKLEMDEPKQ--FKLTLRTYQRQALYWMHHRELSE---P--EE 866
Query: 228 KGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDK 273
+ L + K ++GG+ DDMG+GKT+ +++ I +K
Sbjct: 867 -----IISLVDLDGSKDLSFVKGGLLCDDMGMGKTIEIIATILANK 907
Score = 53 (23.7 bits), Expect = 1.7e-70, Sum P(5) = 1.7e-70
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 639 TCCAHIFCRSCILKTL 654
T C H FC CI K L
Sbjct: 1382 TTCGHFFCTLCIQKNL 1397
Score = 39 (18.8 bits), Expect = 5.6e-69, Sum P(5) = 5.6e-69
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 651 LKTLQHTKPCCPLCRHPLLQSDL 673
L T Q CP+C+ + QS +
Sbjct: 1581 LNTDQEKIFLCPICKQSIKQSTI 1603
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 393 (143.4 bits), Expect = 4.7e-70, Sum P(4) = 4.7e-70
Identities = 89/268 (33%), Positives = 143/268 (53%)
Query: 416 PVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQ 475
P+ K+ W+R++LDEA IKN Q +R+ L AKRRW ++GTPIQN DL+S FL+
Sbjct: 536 PLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLR 595
Query: 476 FEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD-----KGLIGLQPKTIE 530
++P++V + S I+ P+++ + +G +LQ ++ I LRRTK K +I L PK +
Sbjct: 596 YDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVN 655
Query: 531 KYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPS 590
V+ S+ ER Y +LE ++ + Y +AG+L +NY+ +L +LLRLRQ C + L
Sbjct: 656 LSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQLVKR 715
Query: 591 DVRSIIPSNTIEDVSNNP-DLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSC 649
+ + V P + +L+ L+ T C HIFC C
Sbjct: 716 YNSDPVGKVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVV-TLCGHIFCYEC 774
Query: 650 ILKTLQHTKPCCPL--CRHPLLQSDLFS 675
+L+ + + CP+ C+ L + +FS
Sbjct: 775 VLEYITGDENTCPVPRCKQQLARDVVFS 802
Score = 302 (111.4 bits), Expect = 4.7e-70, Sum P(4) = 4.7e-70
Identities = 61/153 (39%), Positives = 96/153 (62%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K+++FSQ+ ML L+E + +G + RLDG+M+ R + ++EF P V+L SL
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKK-PD-VKVMLMSL 951
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G+N+ AA V LL+ WWNP E+QA+DR HRIGQ V + R+ +++++E+RIL+
Sbjct: 952 KAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILK 1011
Query: 836 LQDRKKKLAREAFRRK--GKDQREVSTDDLRIL 866
LQ+ K+ + AF + G ++ DDL+ L
Sbjct: 1012 LQEEKRTMVASAFGEEHGGSSATRLTVDDLKYL 1044
Score = 146 (56.5 bits), Expect = 4.7e-70, Sum P(4) = 4.7e-70
Identities = 49/172 (28%), Positives = 77/172 (44%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTG----TNSLDLNEVEDEEXXXXXXXXX 305
GGI ADD GLGKT++ ++LI K + T +L L+ ++ +
Sbjct: 304 GGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGSH 363
Query: 306 XXXXXXXXXXARGKKHKTV-NTKMD--DNVKGKSVGMLNKSSSFMGKKI---TLIVCPPS 359
+ N + D D K + + + +F K+ TLIVCP S
Sbjct: 364 VKPELKVSSNSETSVLSACGNDENDSSDMEKAEDEEANSSTRAFQWKRPAAGTLIVCPAS 423
Query: 360 VFSTWITQLEEH-TVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE 409
V W +L+E + L +Y+G +RT+D EL YD+V+TTY+ + E
Sbjct: 424 VVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTNE 475
Score = 44 (20.5 bits), Expect = 4.7e-70, Sum P(4) = 4.7e-70
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 201 LFVHQKEGLGWLVRRENS 218
L HQK L W+ ++E S
Sbjct: 281 LMRHQKIALAWMFQKETS 298
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 397 (144.8 bits), Expect = 1.2e-69, Sum P(4) = 1.2e-69
Identities = 93/290 (32%), Positives = 162/290 (55%)
Query: 341 NKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYD-- 397
+K S + + TL+V P S+ W ++ + + ++ +YYG ++ D++ +
Sbjct: 561 SKPSLPVASRTTLVVAPMSLLDQWHSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTST 620
Query: 398 ---LVLTTYSTLAIEESWLE--SPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRR 452
+++T+Y L E S S + + W+RV+LDE H I+N ++ ++ +++++ R
Sbjct: 621 APLIIITSYGVLLSEFSQQSHSSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNR 680
Query: 453 WVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN-RKGLSRLQVLMSTI 511
WV+TGTPI N DL+SL+ F+++EP+ +YWQ+ + P + K L+ +Q ++ +
Sbjct: 681 WVITGTPIVNKLDDLYSLIKFMRYEPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFL 740
Query: 512 SLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLM 565
LRRTK+ ++ L PKT++ Y++ S ERK+YD L KAK V I AG+L
Sbjct: 741 VLRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTKAKSTVNANIVAGTLF 800
Query: 566 RNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLV 615
RNY+T+L +LLRLRQ C + L + I S T +D + + L+
Sbjct: 801 RNYTTILGLLLRLRQACCDPVLLSN---MTINSETFDDFEFSVEQFNSLI 847
Score = 340 (124.7 bits), Expect = 1.2e-69, Sum P(4) = 1.2e-69
Identities = 78/241 (32%), Positives = 133/241 (55%)
Query: 641 CAHIFCRSCILKTLQHTK------PCCPLCRHPLLQSDLF------SSPPESSDM---DI 685
C H C C+ + +Q+ K P C CR P + D++ ++ +S+ + ++
Sbjct: 893 CKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQSTLLVGEEV 952
Query: 686 AGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLD 745
K S K++ K V+FSQF L ++ + L++ R D
Sbjct: 953 KWKYWNRLQSVKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFD 1012
Query: 746 GSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQA 805
G+M+ + R+ +E F N P VL+ SLKA G G+NLT A+ VF+++PWW+ +VE QA
Sbjct: 1013 GTMSQQMRSTALETFRND-PD-VNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQA 1070
Query: 806 MDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRI 865
+DR+HR+GQ++ V + R IVR+++EER+L++Q+RK + +GK Q + S +D+++
Sbjct: 1071 IDRIHRLGQEKPVFVTRYIVRDTVEERMLKIQERKNFITGTLGMSEGKQQVQ-SIEDIKM 1129
Query: 866 L 866
L
Sbjct: 1130 L 1130
Score = 90 (36.7 bits), Expect = 1.2e-69, Sum P(4) = 1.2e-69
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 232 FVNVLTNYHTDKRPEPL---RGGIFADDMGLGKTLTLLSLIALDKC 274
+VN+ T T P + RGGI AD+MGLGKT+ +LSLI C
Sbjct: 503 YVNLYTGETTMLFPNSMPYHRGGILADEMGLGKTIEVLSLIHSRPC 548
Score = 56 (24.8 bits), Expect = 1.2e-69, Sum P(4) = 1.2e-69
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 64 SNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGI 102
SN V+ N+ ++G + VA+V++ L++ G E I
Sbjct: 260 SNIVRFCNSDHHEIGKLPTEVASVISTLMEQGFWSFEAI 298
Score = 43 (20.2 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 485 WQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLY 544
W +L + L N K + ++ T SL +D+ L P + E +S + LY
Sbjct: 364 WIAL-EPDLEDCNTKESIHIDDILKTSSLPEARDESNSDLTPSSTEDEEDVVSDQLAILY 422
Query: 545 DELE 548
D+++
Sbjct: 423 DKVK 426
Score = 37 (18.1 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 452 RWVVTGTPIQNGSFDLFSLMAF 473
++VVTG PI + + +L +F
Sbjct: 849 QFVVTGKPIPSDILKIDTLKSF 870
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 378 (138.1 bits), Expect = 1.4e-69, Sum P(4) = 1.4e-69
Identities = 95/266 (35%), Positives = 139/266 (52%)
Query: 419 KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEP 478
K+ W+RV+LDEA IKN Q +R L AKRRW ++GTPIQN DL+S FL+++P
Sbjct: 468 KVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDP 527
Query: 479 FSV-KSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD-----KGLIGLQPKTIEKY 532
++V KS+ I+ P+++ + +G +LQ ++ I LRRTK + +I L PKTI
Sbjct: 528 YAVYKSFCHQ-IKGPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLS 586
Query: 533 YVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDV 592
V+ S+EER Y +LE ++ + Y AG+L +NY+ +L +LLRLRQ C + L
Sbjct: 587 QVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYN 646
Query: 593 RSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXX-XXTCCAHIFCRSCIL 651
+ + E V P + LV +L E T C HIFC C+
Sbjct: 647 SDSVGKVSEEAVKKLPK--EDLVSLLSRLESSPICCVCHDPPEDPVVTLCGHIFCYQCVS 704
Query: 652 KTLQHTKPCCPL--CRHPLLQSDLFS 675
+ + CP CR L +FS
Sbjct: 705 DYITGDEDTCPAPRCREQLAHDVVFS 730
Score = 303 (111.7 bits), Expect = 1.4e-69, Sum P(4) = 1.4e-69
Identities = 63/153 (41%), Positives = 94/153 (61%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K+++FSQ+ ML L+E L + RLDG+M+ R + ++EF N P V++ SL
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSND-PD-VKVMIMSL 885
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G+N+ AA V LL+ WWNP E+QA+DR HRIGQ V + R+ ++N++E+RIL
Sbjct: 886 KAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILA 945
Query: 836 LQDRKKKLAREAFRRK--GKDQREVSTDDLRIL 866
LQ+ K+K+ AF G ++ DDL+ L
Sbjct: 946 LQEEKRKMVASAFGEDHGGSSATRLTVDDLKYL 978
Score = 157 (60.3 bits), Expect = 1.4e-69, Sum P(4) = 1.4e-69
Identities = 53/166 (31%), Positives = 72/166 (43%)
Query: 250 GGIFADDMGLGKTLTLLSLIALD----KCAGVAPGLTGTNSLDLNEVEDEEXXXXXXXXX 305
GGI ADD GLGKT++ ++LI K G +LDL + +DE
Sbjct: 249 GGILADDQGLGKTVSTIALILKQMHEAKLKSKNSGNQEAEALDL-DADDESENAFEKPES 307
Query: 306 XXXXXXXXXXARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWI 365
G K K S N+ G TLIVCP SV W
Sbjct: 308 KASNGSGVNGDSGIK------KAKGEEASTSTRKFNRKRPAAG---TLIVCPASVVRQWA 358
Query: 366 TQLEEH-TVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE 409
+L+E T L +Y+G +RT+D EL YD+V+TTY+ ++ E
Sbjct: 359 RELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNE 404
Score = 42 (19.8 bits), Expect = 1.4e-69, Sum P(4) = 1.4e-69
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 201 LFVHQKEGLGWLVRRENS 218
L HQK L W+ ++E +
Sbjct: 226 LMKHQKIALAWMFQKETN 243
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 323 (118.8 bits), Expect = 3.9e-69, Sum P(6) = 3.9e-69
Identities = 66/175 (37%), Positives = 109/175 (62%)
Query: 695 SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754
S+K+S+ R + KSV+ SQ+ ML ++ L+ +DGS+N K+R
Sbjct: 975 STKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHRVTYATIDGSVNPKQRM 1034
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ 814
++E F + G GP V+L SL A G G+NLT + +FLL+ WNP++E+QA DR++R+GQ
Sbjct: 1035 DLVEAFNSSG--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQASDRIYRVGQ 1092
Query: 815 KEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
++DV I R + ++EE+IL+LQ++KK LA++ G+ +++ DL+IL +
Sbjct: 1093 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQILSGSGEFVTKLTLADLKILFGI 1147
Score = 310 (114.2 bits), Expect = 3.9e-69, Sum P(6) = 3.9e-69
Identities = 75/197 (38%), Positives = 110/197 (55%)
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIEESWLE----------------SPVKKIEWWRVILD 428
+R Q+ + L MYD+V+TTYS LA E E SP+ +I W R+ILD
Sbjct: 662 NRDQNAKVLSMYDIVITTYSLLAKEIPTKEQEGAVPGAELSVQGTASPLLRIVWARIILD 721
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH +KN Q S V L A+ RW VTGTPIQN D++SL+ FL+ PF S W+S
Sbjct: 722 EAHTVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFSLWKSQ 781
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERK 542
+ G++KG RL +L ++ LRRTKD K L+ L + + + ++LS +E
Sbjct: 782 VDN----GSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEET 837
Query: 543 LYDELEGKAKGVVQDYI 559
+Y+ L +++ +Q Y+
Sbjct: 838 VYNVLFARSRSDLQSYL 854
Score = 141 (54.7 bits), Expect = 3.9e-69, Sum P(6) = 3.9e-69
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 319 KKHKTVNTKMDDNVKGKSVGMLNK--SSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGM 376
+K++ N + D K S L+K SS F + TLI+CP S+ W ++++
Sbjct: 597 QKNQEKNKEKD---KTTSSTWLSKTDSSEFTSHR-TLIICPASLIHHWKNEVQKRVCNNE 652
Query: 377 LKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE 409
L+ Y+Y+G +R Q+ + L MYD+V+TTYS LA E
Sbjct: 653 LRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 686
Score = 77 (32.2 bits), Expect = 3.9e-69, Sum P(6) = 3.9e-69
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 250 GGIF--ADDMGLGKTLTLLSLIALDK 273
GGI ADDMGLGKTLT+++LI K
Sbjct: 573 GGILFPADDMGLGKTLTMIALILTQK 598
Score = 61 (26.5 bits), Expect = 3.9e-69, Sum P(6) = 3.9e-69
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPP 223
+K L +HQK+ L WL+ RE+ + PP
Sbjct: 548 LKVPLLLHQKQALAWLLWRESQK--PP 572
Score = 57 (25.1 bits), Expect = 3.9e-69, Sum P(6) = 3.9e-69
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 561 AGSLMRNYST-VLSILLRLRQICTNLALCPS 590
AG L + + +LS LLRLRQ C +L+L S
Sbjct: 890 AGDLQGSSTVHILSQLLRLRQCCCHLSLLKS 920
Score = 40 (19.1 bits), Expect = 4.1e-38, Sum P(5) = 4.1e-38
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 755 QVIEEFGNPGPGGP 768
+V +EFG+ GP P
Sbjct: 875 EVAQEFGSDGPRRP 888
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 323 (118.8 bits), Expect = 4.7e-69, Sum P(6) = 4.7e-69
Identities = 66/175 (37%), Positives = 109/175 (62%)
Query: 695 SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754
S+K+S+ R + KSV+ SQ+ ML ++ L+ +DGS+N K+R
Sbjct: 997 STKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHRVTYATIDGSVNPKQRM 1056
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ 814
++E F + G GP V+L SL A G G+NLT + +FLL+ WNP++E+QA DR++R+GQ
Sbjct: 1057 DLVEAFNSSG--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQASDRIYRVGQ 1114
Query: 815 KEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
++DV I R + ++EE+IL+LQ++KK LA++ G+ +++ DL+IL +
Sbjct: 1115 QKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQILSGSGEFVTKLTLADLKILFGI 1169
Score = 310 (114.2 bits), Expect = 4.7e-69, Sum P(6) = 4.7e-69
Identities = 75/197 (38%), Positives = 110/197 (55%)
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIEESWLE----------------SPVKKIEWWRVILD 428
+R Q+ + L MYD+V+TTYS LA E E SP+ +I W R+ILD
Sbjct: 684 NRDQNAKVLSMYDIVITTYSLLAKEIPTKEQEGAVPGAELSVQGTASPLLRIVWARIILD 743
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH +KN Q S V L A+ RW VTGTPIQN D++SL+ FL+ PF S W+S
Sbjct: 744 EAHTVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFSLWKSQ 803
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERK 542
+ G++KG RL +L ++ LRRTKD K L+ L + + + ++LS +E
Sbjct: 804 VDN----GSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEET 859
Query: 543 LYDELEGKAKGVVQDYI 559
+Y+ L +++ +Q Y+
Sbjct: 860 VYNVLFARSRSDLQSYL 876
Score = 141 (54.7 bits), Expect = 4.7e-69, Sum P(6) = 4.7e-69
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 319 KKHKTVNTKMDDNVKGKSVGMLNK--SSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGM 376
+K++ N + D K S L+K SS F + TLI+CP S+ W ++++
Sbjct: 619 QKNQEKNKEKD---KTTSSTWLSKTDSSEFTSHR-TLIICPASLIHHWKNEVQKRVCNNE 674
Query: 377 LKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE 409
L+ Y+Y+G +R Q+ + L MYD+V+TTYS LA E
Sbjct: 675 LRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 708
Score = 77 (32.2 bits), Expect = 4.7e-69, Sum P(6) = 4.7e-69
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 250 GGIF--ADDMGLGKTLTLLSLIALDK 273
GGI ADDMGLGKTLT+++LI K
Sbjct: 595 GGILFPADDMGLGKTLTMIALILTQK 620
Score = 61 (26.5 bits), Expect = 4.7e-69, Sum P(6) = 4.7e-69
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPP 223
+K L +HQK+ L WL+ RE+ + PP
Sbjct: 570 LKVPLLLHQKQALAWLLWRESQK--PP 594
Score = 57 (25.1 bits), Expect = 4.7e-69, Sum P(6) = 4.7e-69
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 561 AGSLMRNYST-VLSILLRLRQICTNLALCPS 590
AG L + + +LS LLRLRQ C +L+L S
Sbjct: 912 AGDLQGSSTVHILSQLLRLRQCCCHLSLLKS 942
Score = 40 (19.1 bits), Expect = 4.7e-38, Sum P(5) = 4.7e-38
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 755 QVIEEFGNPGPGGP 768
+V +EFG+ GP P
Sbjct: 897 EVAQEFGSDGPRRP 910
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 374 (136.7 bits), Expect = 2.6e-67, Sum P(7) = 2.6e-67
Identities = 72/178 (40%), Positives = 117/178 (65%)
Query: 692 NFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAG--FKLLRLDGSMN 749
N +SSK+ A + P +K +VFSQF L +++ L+ A F + + DG +N
Sbjct: 905 NRSSSKIQALVRHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLN 964
Query: 750 AKKRAQVIEEFGNPGPGGPT-VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDR 808
R +++E F P G +LL SLKA G G+NLT ASR ++++PWW+P++E+QA+DR
Sbjct: 965 MNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDR 1024
Query: 809 VHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
+HRIGQ E VK+VR I+ NSIE ++L++Q+RKK++ EA + +++R+ ++++IL
Sbjct: 1025 IHRIGQNETVKVVRFIMENSIETKMLKIQERKKQIG-EAVAAEEEERRKRRIEEIQIL 1081
Score = 287 (106.1 bits), Expect = 2.6e-67, Sum P(7) = 2.6e-67
Identities = 67/202 (33%), Positives = 116/202 (57%)
Query: 396 YDLVLTTYSTLAIEE-SWLESP---VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKR 451
Y VL ++ L+ S E P + ++++R+ILDE H I+N N + +++V L + R
Sbjct: 558 YGTVLNEFTRLSKRRNSKGELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSR 617
Query: 452 RWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN-RKGLSRLQVLMST 510
+W++TGTPI N DL+SL FL+ +P++ SYW++ + P Q + L ++ ++
Sbjct: 618 KWILTGTPIVNRLDDLYSLTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEP 677
Query: 511 ISLRRTKD-----KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLM 565
I LRRTK K L+ L K + ++ + +E KLY + +A + I +G L+
Sbjct: 678 IFLRRTKSQKKNGKPLVELPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLL 737
Query: 566 RNYSTVLSILLRLRQICTNLAL 587
R Y+ +L+ +LRLRQ+C ++ L
Sbjct: 738 RRYTQILTHILRLRQVCCHVDL 759
Score = 85 (35.0 bits), Expect = 2.6e-67, Sum P(7) = 2.6e-67
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 639 TCCAHIFCRSCILKTLQHTKPC-----CPLCRHPLLQSDLF 674
T CAH FC SCIL+ L K CP CR P+ + LF
Sbjct: 832 TPCAHTFCLSCILEHLDFQKELKKEKLCPNCRSPISKYQLF 872
Score = 81 (33.6 bits), Expect = 2.6e-67, Sum P(7) = 2.6e-67
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 248 LRGGIFADDMGLGKTLTLLSLI 269
LRGGI AD+MGLGKT+ L+L+
Sbjct: 456 LRGGILADEMGLGKTIATLALV 477
Score = 56 (24.8 bits), Expect = 2.6e-67, Sum P(7) = 2.6e-67
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 63 DSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEG-IVPNTRSK---GNRFKIPCQ 118
+S V+V + + +G I +L+PL D + + E ++ T+S+ G+ F I +
Sbjct: 184 NSAIVRVYHNERE-IGRIPEDWTRILSPLFDLNIAVFEASVLEETKSRLSTGDSFVIEIE 242
Query: 119 VHI 121
V++
Sbjct: 243 VYL 245
Score = 48 (22.0 bits), Expect = 2.6e-67, Sum P(7) = 2.6e-67
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 342 KSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--------DVEEL 393
KS + TLIV P S+ W ++ E+ ++YG+ + + +
Sbjct: 489 KSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLCNPDNS 548
Query: 394 KMYDLVLTTYSTLAIE 409
K+ +++TTY T+ E
Sbjct: 549 KIPIVMITTYGTVLNE 564
Score = 46 (21.3 bits), Expect = 2.6e-67, Sum P(7) = 2.6e-67
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 200 ELFVHQKEGLGWLVRRE 216
+L +QK GL W++ RE
Sbjct: 363 DLRSYQKHGLSWMLARE 379
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 485 (175.8 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 133/413 (32%), Positives = 209/413 (50%)
Query: 477 EPFSVKSYWQSLIQRPLAQGNRKGLSRLQV-----LMSTISLRRTKDKGL--IGLQPKTI 529
+P S Y+ + + +P+ + +G +L L+ I LRRTK + +GL P+ +
Sbjct: 473 KPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLERADDLGLPPRVV 532
Query: 530 EKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCP 589
E + EE +Y L +K Y+ G ++ NY+ + ++ R+RQ+ + L
Sbjct: 533 EVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVL 592
Query: 590 SDVRSIIPSNTIEDVSNNPDLLKKLV-EVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRS 648
+ R + D+ N +++ K+ EV QD + + C H FCR
Sbjct: 593 ASKRKTV------DIENQENIVCKICDEVAQDAIE---------------SRCHHTFCRL 631
Query: 649 CILKTLQHT----KPCCPLCRHPLLQSDLFSSPP--ESSDMDIAGKTLKNF-------TS 695
C+ + + CP C PL DL S+P + S+ ++ N +S
Sbjct: 632 CVTEYINAAGDGENVNCPSCFIPL-SIDL-SAPALEDFSEEKFKNASILNRIDMNSWRSS 689
Query: 696 SKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQ 755
+K+ A R K T KS+VFSQF ML L+ L+ AGF ++LDG M K RA
Sbjct: 690 TKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAA 749
Query: 756 VIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQK 815
IE F N T+ L SLKA G +NLT AS+VF+++PWWN AV+ QAMDR+HRIGQK
Sbjct: 750 TIEAFSNDI--NITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQK 807
Query: 816 EDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
+K++ L + NSIE +I+ELQ++K ++ + K ++S +D++ L S
Sbjct: 808 RPIKVITLCIENSIESKIIELQEKKAQMIHATIDQDEKALNQLSVEDMQFLFS 860
Score = 221 (82.9 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 58/167 (34%), Positives = 92/167 (55%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ 388
D+ GK++ + S K TL+V P W +++ HT L TY+YYG + +
Sbjct: 281 DEMGMGKTIQTIALLLSEPRGKPTLVVAPVVAIMQWKEEIDTHTNKA-LSTYLYYG-QAR 338
Query: 389 DV--EELKMYDLVLTTYSTLAI----EESWL---------ESPVKKIEWWRVILDEAHVI 433
D+ EEL YD+VLT+Y+ + E S +S + ++E++R+ILDEAH I
Sbjct: 339 DISGEELSSYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGI 398
Query: 434 KNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480
K+ +R V L R+ ++GTP+QN +LFSL+ FL+ +PF+
Sbjct: 399 KSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFA 445
Score = 66 (28.3 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
GGI AD+MG+GKT+ ++L+
Sbjct: 276 GGILADEMGMGKTIQTIALL 295
Score = 46 (21.3 bits), Expect = 8.8e-66, Sum P(4) = 8.8e-66
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 201 LFVHQKEGLGWLVRRENS 218
L Q+EG+ WL R+E+S
Sbjct: 255 LLPFQREGVYWLKRQEDS 272
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 329 (120.9 bits), Expect = 3.0e-65, Sum P(6) = 3.0e-65
Identities = 75/208 (36%), Positives = 122/208 (58%)
Query: 668 LLQSDLFSSPPESSDMDIAGKTLKN--FT----SSKVSAXXXXXXXXRDKKPTTKSVVFS 721
L S+L S P SS + + G K F S+K+S+ + + KSV+ S
Sbjct: 958 LTLSELRDSEP-SSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVS 1016
Query: 722 QFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAG 781
Q+ ML ++ L+ G +DGS+N K+R ++E F + GP V+L SL A G G
Sbjct: 1017 QWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSR--GPQVMLISLLAGGVG 1074
Query: 782 VNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841
+NLT + +FLL+ WNP++E+QA DR++R+GQ++DV I R + ++EE+IL+LQ++KK
Sbjct: 1075 LNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKK 1134
Query: 842 KLAREAFRRKGKDQREVSTDDLRILMSL 869
LA++ G+ +++ DLR+L +
Sbjct: 1135 DLAKQVLSGSGESVTKLTLADLRVLFGI 1162
Score = 278 (102.9 bits), Expect = 3.0e-65, Sum P(6) = 3.0e-65
Identities = 71/207 (34%), Positives = 110/207 (53%)
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIE------ESWL----------ESPVKKIEWWRVILD 428
+R L YD+V+TTYS +A E E+ + +P+ +I W R+ILD
Sbjct: 678 NRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILD 737
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH +KN Q S V L A RW VTGTPIQN D++SL+ FL+ PF + W+S
Sbjct: 738 EAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQ 797
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKDK----G--LIGLQPKTIEKYYVELSLEERK 542
+ G++KG RL +L ++ LRRTKD+ G L+ L + + ++++LS +E
Sbjct: 798 VDN----GSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEET 853
Query: 543 LYDELEGKAKGVVQDYINAGSLMRNYS 569
+Y+ +++ +Q Y+ N S
Sbjct: 854 VYNVFFARSRSALQSYLKRHESRGNQS 880
Score = 123 (48.4 bits), Expect = 3.0e-65, Sum P(6) = 3.0e-65
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 327 KMDDNVKGKSVGMLNKSSSF-MGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG- 384
K ++ K ++ L+K S TLI+CP S+ W ++E+ L+ Y+Y+G
Sbjct: 618 KKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGP 677
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIE 409
+R L YD+V+TTYS +A E
Sbjct: 678 NRDSRARVLSTYDIVITTYSLVAKE 702
Score = 89 (36.4 bits), Expect = 3.0e-65, Sum P(6) = 3.0e-65
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALDK 273
+GGI ADDMGLGKTLT+++LI K
Sbjct: 590 QGGILADDMGLGKTLTMIALILTQK 614
Score = 58 (25.5 bits), Expect = 3.0e-65, Sum P(6) = 3.0e-65
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 197 IKSELFVHQKEGLGWLVRRENSE 219
+K L +HQK+ L WL+ RE+ +
Sbjct: 566 LKVPLLLHQKQALAWLLWRESQK 588
Score = 54 (24.1 bits), Expect = 3.0e-65, Sum P(6) = 3.0e-65
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 571 VLSILLRLRQICTNLALCPS 590
+LS LLRLRQ C +L+L S
Sbjct: 916 ILSQLLRLRQCCCHLSLLKS 935
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 451 (163.8 bits), Expect = 5.8e-65, Sum P(3) = 5.8e-65
Identities = 126/387 (32%), Positives = 197/387 (50%)
Query: 499 KGLSRLQVLMSTISLRRTKDKGL--IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQ 556
+G + L+ L+ + LRRTK + +GL P+ +E + EE+ LY L +K
Sbjct: 486 EGFNNLRSLLDHVMLRRTKIERADDLGLPPRVVEIRRDFFNEEEKDLYQSLYSDSKRKFN 545
Query: 557 DYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVE 616
DY+ G ++ NY+ + +++ R+RQ+ + L V S SN I+ V ++ +L +
Sbjct: 546 DYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGV-----IMCQLCD 600
Query: 617 VLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQH-----TKPCCPLCRHPLLQS 671
+ E+ + C H FCR CI + ++ K CP+C H L
Sbjct: 601 --DEAEE------------PIESKCHHRFCRMCIQEYMESFMGASNKLECPVC-HIGLSI 645
Query: 672 DLFSSPPESSDMDIAGKT-----LKNF-------TSSKVSAXXXXXXXXRDKKPTTKSVV 719
DL P D ++ K +K+ +S+K+ A R + T KS+V
Sbjct: 646 DL-EQPAIEVDEELFTKASIVNRIKSGAHGGEWRSSTKIEALVEELYKLRSDRHTIKSIV 704
Query: 720 FSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASG 779
FSQF ML L++ L+ AGF ++L GSM+ ++R I+ F V L SLKA G
Sbjct: 705 FSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTE--VEVFLVSLKAGG 762
Query: 780 AGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDR 839
+NL AS+VFL++PWWNP+VE Q+MDRVHRIGQK ++I R + +SIE +I+ELQ++
Sbjct: 763 VALNLCEASQVFLMDPWWNPSVEWQSMDRVHRIGQKRPIRITRFCIEDSIESKIIELQEK 822
Query: 840 KKKLAREAFRRKGKDQREVSTDDLRIL 866
K + ++ DDL+ L
Sbjct: 823 KANMIHATINNDDAAISRLTPDDLQFL 849
Score = 277 (102.6 bits), Expect = 5.8e-65, Sum P(3) = 5.8e-65
Identities = 59/165 (35%), Positives = 96/165 (58%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRT 387
D+ GK++ + K L++ P W ++E+HT PGMLK +Y+G +R+
Sbjct: 266 DEMGMGKTIQTIGLFMHDRSKGPNLVIGPTVALMQWKNEIEKHTEPGMLKVLLYHGSNRS 325
Query: 388 QDVEELKMYDLVLTTYSTLAI----------EESWL---ESPVKKIEWWRVILDEAHVIK 434
++EL YD++LT+YS L ++ L +S + IE++RVILDEAH IK
Sbjct: 326 NSIQELSQYDVILTSYSVLESVYRKQNYGFKRKNGLVKEKSAIHNIEFYRVILDEAHNIK 385
Query: 435 NANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPF 479
+ N+ SR LN K+RW +TGTP+QN +++SL+ +++ +PF
Sbjct: 386 DRNSNTSRAAGKLNTKKRWCLTGTPLQNRIGEMYSLIRYMKLDPF 430
Score = 71 (30.1 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAG 276
GGI AD+MG+GKT+ + L D+ G
Sbjct: 261 GGILADEMGMGKTIQTIGLFMHDRSKG 287
Score = 52 (23.4 bits), Expect = 5.8e-65, Sum P(3) = 5.8e-65
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 200 ELFVHQKEGLGWLVRRENSE 219
+L Q EGL WL+++E+ E
Sbjct: 239 KLLPFQLEGLNWLIKQEDGE 258
Score = 45 (20.9 bits), Expect = 9.1e-21, Sum P(3) = 9.1e-21
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 661 CPLCRHP-LLQSDLFSS--PPESSDMDIAGKTLKNFTS 695
C LC+HP +L ++ F+ IAG L+ F +
Sbjct: 453 CDLCQHPPMLHTNFFNHFMLKNIQKFGIAGLGLEGFNN 490
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 335 (123.0 bits), Expect = 7.8e-65, Sum P(7) = 7.8e-65
Identities = 77/200 (38%), Positives = 121/200 (60%)
Query: 393 LKMYDLVLT---TYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNA 449
L Y +V++ T+ LA SW + ++++RVILDEAH+IKN ++ +R +L A
Sbjct: 616 LTSYGVVMSEHRTHQALAPGTSWTPGNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKA 675
Query: 450 KRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNR-KGLSRLQVLM 508
RWV+TGTPI N DLFSL+ FL+ EP++ S+W++ I P + +S +Q ++
Sbjct: 676 THRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWKTFITAPFESKEVVRAISVVQTVL 735
Query: 509 STISLRRTKD----KG--LIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAG 562
+ LRRTK +G L+ L +TI VEL +ER++Y+ + +AK + AG
Sbjct: 736 EPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAG 795
Query: 563 SLMRNYSTVLSILLRLRQIC 582
+L+++YST+ + LLRLRQ C
Sbjct: 796 TLLKSYSTIFAQLLRLRQTC 815
Score = 277 (102.6 bits), Expect = 7.8e-65, Sum P(7) = 7.8e-65
Identities = 55/105 (52%), Positives = 77/105 (73%)
Query: 765 PGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLI 824
P PTVLL SLKA G G+NLTAAS VF+++PWW+ A+E QA+DRVHR+GQ DV +VR I
Sbjct: 1096 PSSPTVLLISLKAGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQLRDVNVVRFI 1155
Query: 825 VRNSIEERILELQDRKKKLARE-AFRRKGKDQ--REVSTDDLRIL 866
V++SIEER+L +Q+RK +A +G ++ R+ ++LR+L
Sbjct: 1156 VKDSIEERMLRVQERKMGIAGSLGLMGEGNEEERRKERIEELRLL 1200
Score = 111 (44.1 bits), Expect = 7.8e-65, Sum P(7) = 7.8e-65
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 677 PPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPT-TKSVVFSQFRKMLILLEEPLQ 735
PP S I + TS+K+ A + P TKSVVFSQF L L+ L
Sbjct: 980 PPRISLRRINPLSPSAHTSAKIHALLAHLV----RVPAGTKSVVFSQFTSFLDLIGPQLT 1035
Query: 736 AAGFKLLRLDGSMNAKKRAQVIEEF 760
AG +RLDG+M K RA+V+ +F
Sbjct: 1036 KAGISFVRLDGTMAQKARAEVLAQF 1060
Score = 77 (32.2 bits), Expect = 7.8e-65, Sum P(7) = 7.8e-65
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
GGI AD+MGLGKT+ +LSL+
Sbjct: 512 GGILADEMGLGKTIEMLSLV 531
Score = 66 (28.3 bits), Expect = 1.2e-36, Sum P(7) = 1.2e-36
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEEL------KMYDLVLTTYS 404
TL+V P S+ + W + + + G +K MYYG ++ ++ E+ +++LT+Y
Sbjct: 561 TLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSYG 620
Query: 405 TLAIEESWLESPVKKIEW 422
+ E ++ W
Sbjct: 621 VVMSEHRTHQALAPGTSW 638
Score = 63 (27.2 bits), Expect = 7.8e-65, Sum P(7) = 7.8e-65
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 639 TCCAHIFCRSCILKTLQHTK-----PCCPLCRHPLLQSDLF 674
T C H C+ C+ +QH + P C CR L D+F
Sbjct: 906 TACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDIF 946
Score = 55 (24.4 bits), Expect = 7.8e-65, Sum P(7) = 7.8e-65
Identities = 23/89 (25%), Positives = 39/89 (43%)
Query: 43 SGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGI 102
S +S R G +R +N + NT ++G + R A ++ L+D + G+
Sbjct: 228 SQPLSTRGRTGKLR--VNQKGDVLTRFTNTAGQEIGRLPRETAEWVSTLLDQKICEFRGV 285
Query: 103 ---VPNTRSKGNRFKIPCQVHIFTRLEMF 128
P+ R + N I Q+ F R+E F
Sbjct: 286 CVFAPD-RLRVND-TIYLQLRCFMRIEAF 312
Score = 47 (21.6 bits), Expect = 7.8e-65, Sum P(7) = 7.8e-65
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 200 ELFVHQKEGLGWLVRRENSEE------LPPFWEE 227
+L +QK+ L W++ +E ++ + P WEE
Sbjct: 435 DLRKYQKQALYWMLSKEKDKKSGREVSIHPLWEE 468
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 378 (138.1 bits), Expect = 3.7e-63, Sum P(4) = 3.7e-63
Identities = 102/279 (36%), Positives = 151/279 (54%)
Query: 338 GMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-RTQDVEELKMY 396
G++ K TL+V P S + W++Q++EH G L +Y+++G RT V+EL Y
Sbjct: 572 GLVKSRPGIRNTKTTLLVAPLSTVNNWVSQVKEHLRDGALTSYVFHGSSRTTSVDELSKY 631
Query: 397 DLVLTTYSTLAIEESWL------ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
DLV+TTYS + E S SP+ K+ +R++LDEAH I+ +A Q++ + LNA+
Sbjct: 632 DLVITTYSIVLSELSGRGSRRAGSSPLTKMNMFRIVLDEAHTIREQSAAQTQAIFRLNAQ 691
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMST 510
RRW VTGTPIQN DL S+ FL P+ +S + I G+ L+ L+VL+ +
Sbjct: 692 RRWSVTGTPIQNRLDDLLSVTKFLGIYPYDDRSRFNMHILSRFKTGDATVLASLRVLVDS 751
Query: 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAG---SLM-- 565
+LRR KDK I L + + +E S E +L+ E K V+ I AG S M
Sbjct: 752 FTLRRVKDK--IDLPARHDKIVMLEFSESEAQLH-EFFRKESNVMMRVI-AGEDKSKMKG 807
Query: 566 RNYSTVLSILLRLRQICTN-LALCPSDVRSIIPSNTIED 603
R Y +L ++ LRQI + L SD R+ I ++ D
Sbjct: 808 RMYHHILKAMMILRQISAHGKELLDSDERARIKGLSVHD 846
Score = 287 (106.1 bits), Expect = 3.7e-63, Sum P(4) = 3.7e-63
Identities = 66/155 (42%), Positives = 97/155 (62%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFK-LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
KSVVFS + L L+E L+ G RLDG+M+ R + ++ F + T+LLA+
Sbjct: 1016 KSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNKALDNFRDDN--NTTILLAT 1073
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
+ A G G+NLTAAS V+++EP +NPA QA+DRVHR+GQ +V V+ I+++SIEE+I
Sbjct: 1074 IGAGGVGLNLTAASHVYIMEPQYNPAAVAQAIDRVHRLGQTREVTTVQFIMKDSIEEKIA 1133
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
EL +K++LA + R D+ EV +R SL
Sbjct: 1134 ELAKKKQQLADMSLNRGKLDKAEVQEQRMREYRSL 1168
Score = 104 (41.7 bits), Expect = 3.7e-63, Sum P(4) = 3.7e-63
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELPP-------FWEEK--GGG---FVNVLTNYHTDK 243
V+ + L HQK+ L ++ +E + P W E+ G + V++ D+
Sbjct: 469 VVTTPLLRHQKQALWFMTEKEAPRKFGPKEEDNNSLWREEYSANGTKKYREVISGIVLDQ 528
Query: 244 RPEPLRGGIFADDMGLGKTLTLLSLI 269
P GG+ AD MGLGKTL++LSL+
Sbjct: 529 EPPQSLGGLLADMMGLGKTLSILSLV 554
Score = 55 (24.4 bits), Expect = 3.7e-63, Sum P(4) = 3.7e-63
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 64 SNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVE 100
+N ++V + G ++ AAV+ PL+DS + VE
Sbjct: 309 NNRIEVSDPNGKVFGVVDSRTAAVIVPLLDSPALKVE 345
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 313 (115.2 bits), Expect = 3.4e-62, Sum P(6) = 3.4e-62
Identities = 62/175 (35%), Positives = 106/175 (60%)
Query: 695 SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754
SSK+S+ R + KSV+ SQ+ ML ++ L+ G ++GS+ K+R
Sbjct: 978 SSKISSLLVELEAIRGNSGSQKSVIVSQWTSMLQIVAWHLKKRGLTYATINGSVRPKQRM 1037
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ 814
++E F + P V+L SL A G G+NLT + +FLL+ WNP++E+QA DR++R+GQ
Sbjct: 1038 DLVEAFNSSR--SPQVMLISLSAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQ 1095
Query: 815 KEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
++DV + + I ++EE+IL LQ++KK LA++ G ++++ DL++L +
Sbjct: 1096 QKDVVVHKFICEGTVEEKILHLQEKKKTLAKQVLSGSGTSVKKLTLADLKVLFGI 1150
Score = 280 (103.6 bits), Expect = 3.4e-62, Sum P(6) = 3.4e-62
Identities = 60/155 (38%), Positives = 89/155 (57%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAF 473
++P+ +I W R+ILDEAH ++N Q S V L A RW VTGTPIQN D++SL+ F
Sbjct: 709 KTPLLRIVWARIILDEAHCVRNPRVQTSMAVCKLQAHARWAVTGTPIQNTLLDMYSLLKF 768
Query: 474 LQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPK 527
L+ PF W+S + G++KG RL +L ++ LRRTKD K L+ L +
Sbjct: 769 LRCSPFDDFQLWKSQVDN----GSKKGGERLSILTKSLLLRRTKDQLDSTGKPLVMLPQR 824
Query: 528 TIEKYYVELSLEERKLYDELEGKAKGVVQDYINAG 562
+ ++LS +E +Y L K++ +Q Y+ AG
Sbjct: 825 QFHVHRLKLSEDEENVYSVLLAKSRSALQSYLKAG 859
Score = 115 (45.5 bits), Expect = 3.4e-62, Sum P(6) = 3.4e-62
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 326 TKMDDNVKGKSVGMLNKSSS--FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYY 383
TK +D K ++ L+K S F + TLI+CP S+ W ++ + L+ +Y+
Sbjct: 603 TKEED--KNVALTWLSKDDSREFTSRG-TLIICPASLIHHWKNEVMKRVSSNTLRVCLYH 659
Query: 384 G-DRTQDVEELKMYDLVLTTYSTLAIE 409
G +R Q + L YD+V+TTY+ LA E
Sbjct: 660 GPNRDQRAKVLSTYDIVITTYNLLAKE 686
Score = 88 (36.0 bits), Expect = 3.4e-62, Sum P(6) = 3.4e-62
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDK 273
GGI ADDMGLGKTLT+++LI K
Sbjct: 575 GGILADDMGLGKTLTMIALILTQK 598
Score = 58 (25.5 bits), Expect = 3.4e-62, Sum P(6) = 3.4e-62
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 197 IKSELFVHQKEGLGWLVRRENSE 219
+K L +HQK+ L WL+ RE+ +
Sbjct: 550 LKVPLLLHQKQALAWLLWRESQK 572
Score = 49 (22.3 bits), Expect = 3.4e-62, Sum P(6) = 3.4e-62
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 571 VLSILLRLRQICTNLALCPS 590
+L+ LLRLRQ C +L+L S
Sbjct: 904 LLTRLLRLRQCCCHLSLLKS 923
Score = 47 (21.6 bits), Expect = 4.6e-61, Sum P(6) = 4.6e-61
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 198 KSELFVHQKEGLGWLVRRENSEELPP---FWEE--KGGGFVNVLTN---YHTDKRPEPLR 249
K+EL KE G + + N E+ EE K G + V +N +H +K+ EPLR
Sbjct: 201 KTELQHEAKENKG--MHKRNLSEVKSKQCHVEELRKPSGSLQVKSNIESHHVEKKSEPLR 258
Score = 41 (19.5 bits), Expect = 5.6e-33, Sum P(5) = 5.6e-33
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 744 LDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRV 790
L G ++V +EFG+ PG P V S + + LT R+
Sbjct: 866 LSGRSPGNPFSKVAQEFGSSRPG-PCVAADSQRPGTPHLLLTRLLRL 911
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 434 (157.8 bits), Expect = 6.0e-61, Sum P(3) = 6.0e-61
Identities = 127/412 (30%), Positives = 206/412 (50%)
Query: 476 FEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL--IGLQPKTIEKYY 533
F F +K+ + ++ P + + +Q L+ I LRRTK + +GL P+ +
Sbjct: 410 FNHFMLKNIQKFGVEGP----GLESFNNIQTLLKNIMLRRTKVERADDLGLPPRIVTVRR 465
Query: 534 VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVR 593
+ EE+ LY L +K ++ G ++ NY+ + +++ R+RQ+ +
Sbjct: 466 DFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADH--------- 516
Query: 594 SIIPSNTIEDVSNNP--DLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCIL 651
P ++ ++N P D+ + ++ D + + C H FCR CI
Sbjct: 517 ---PDLVLKRLNNFPGDDIGVVICQLCNDEAE-----------EPIESKCHHKFCRLCIK 562
Query: 652 KTLQ-----HTKPCCPLCR--------HPLLQSDLFSSPPES--SDMDIAGKTLKNFTSS 696
+ ++ + K CP+C P L+ DL S +S S ++++GK +S+
Sbjct: 563 EYVESFMENNNKLTCPVCHIGLSIDLSQPALEVDLDSFKKQSIVSRLNMSGKWQ---SST 619
Query: 697 KVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQV 756
K+ A R K T KS+VFSQF ML L+E L+ AGF+ ++L GSM+ +R +
Sbjct: 620 KIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDET 679
Query: 757 IEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKE 816
I+ F N V L SLKA G +NL AS+VF+L+PWWNP+VE Q+ DRVHRIGQ
Sbjct: 680 IKYFMNNIQC--EVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYR 737
Query: 817 DVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
VKI R + +SIE RI+ELQ++K + + ++ DL+ L +
Sbjct: 738 PVKITRFCIEDSIEARIIELQEKKANMIHATINQDEAAISRLTPADLQFLFN 789
Score = 262 (97.3 bits), Expect = 6.0e-61, Sum P(3) = 6.0e-61
Identities = 58/166 (34%), Positives = 99/166 (59%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRT 387
D+ GK++ + + + K +L+V P W ++E+HT G LK Y+Y+G RT
Sbjct: 210 DEMGMGKTIQTIALLMNDLTKSPSLVVAPTVALMQWKNEIEQHT-KGQLKIYIYHGASRT 268
Query: 388 QDVEELKMYDLVLTTYSTLAI---EESW--------LESP--VKKIEWWRVILDEAHVIK 434
D+++L+ YD+VLTTY+ L ++++ + P + I+++RVILDEAH IK
Sbjct: 269 TDIKDLQGYDVVLTTYAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIK 328
Query: 435 NANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480
+ + +R V NL ++RW ++GTP+QN +++SL+ FL PF+
Sbjct: 329 DRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFT 374
Score = 67 (28.6 bits), Expect = 1.4e-40, Sum P(3) = 1.4e-40
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 250 GGIFADDMGLGKTLTLLSLIALD 272
GG+ AD+MG+GKT+ ++L+ D
Sbjct: 205 GGVLADEMGMGKTIQTIALLMND 227
Score = 45 (20.9 bits), Expect = 6.0e-61, Sum P(3) = 6.0e-61
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 200 ELFVHQKEGLGWLVRRENS 218
+L Q EGL WL+ +E S
Sbjct: 183 KLLPFQLEGLHWLISQEES 201
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 325 (119.5 bits), Expect = 1.1e-60, Sum P(5) = 1.1e-60
Identities = 71/143 (49%), Positives = 93/143 (65%)
Query: 709 RDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
R + P K +VFS F ML +E L AG R DGSM R +E+ N G
Sbjct: 910 RREAPDFKFIVFSVFTSMLDKIEPFLSRAGIGYARYDGSMRNDLREASLEKLRNHR--GT 967
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
VLL SL+A G+NLTAASRV +LEP+WNP VEEQA+DRVHR+ Q DVKI ++I++++
Sbjct: 968 RVLLCSLRAGALGLNLTAASRVVILEPFWNPFVEEQAIDRVHRLNQTVDVKIYKMIIKDT 1027
Query: 829 IEERILELQDRKKKLAREAFRRK 851
+EERIL+LQ+RK++LA K
Sbjct: 1028 VEERILDLQERKRELANVTIEGK 1050
Score = 315 (115.9 bits), Expect = 1.1e-60, Sum P(5) = 1.1e-60
Identities = 70/178 (39%), Positives = 109/178 (61%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPG-MLKTYMYYGD-RTQDVEELKMYDLVLTTYSTLA 407
K TL+V P ++ W ++++ P L+ +Y+G+ R + + L YD+V+TTY TL
Sbjct: 418 KSTLVVAPLALIKQWESEIKTKVEPSHRLRVLVYHGNARAKATDSLDDYDVVITTYGTLT 477
Query: 408 IEESWLESPVKK-----IEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
E + + KK + W+R+ILDEAH IKN NA+ ++ L+A+ RW ++GTP+QN
Sbjct: 478 SEHNAVTKNDKKAGIFSVYWYRIILDEAHTIKNRNAKATQAAYALDAEYRWCLSGTPMQN 537
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLS--RLQVLMSTISLRRTKD 518
+L SL+ FL+ +P++ + W+ I RPLA G R GL+ RLQV++ RRTKD
Sbjct: 538 NLDELQSLIRFLRIKPYNDLANWKDQITRPLANG-RGGLAIERLQVVLKAFMKRRTKD 594
Score = 74 (31.1 bits), Expect = 1.1e-60, Sum P(5) = 1.1e-60
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLA 586
+ + K V+ E+ Y+ LE + ++ + + +Y+ L++LLRLRQ C +
Sbjct: 622 REVVKVAVDFMPGEKNFYERLEQRTDNSLEKMMGDSKI--DYAGALTLLLRLRQCCNHPD 679
Query: 587 LCPSDV 592
L SD+
Sbjct: 680 LVRSDL 685
Score = 72 (30.4 bits), Expect = 1.1e-60, Sum P(5) = 1.1e-60
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 249 RGGIFADDMGLGKTLTLLSLI 269
+GGI ADDMGLGKT+ ++L+
Sbjct: 356 KGGILADDMGLGKTVQAIALM 376
Score = 61 (26.5 bits), Expect = 1.1e-60, Sum P(5) = 1.1e-60
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKG 229
++ +L HQ++G+ W+ +E L P EEKG
Sbjct: 321 LRVQLLPHQRQGVNWMCAKEIGS-LKPRKEEKG 352
Score = 39 (18.8 bits), Expect = 2.7e-55, Sum P(4) = 2.7e-55
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 284 TNSLDLNEVEDEE 296
TN D EVEDE+
Sbjct: 284 TNETDEQEVEDEK 296
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 348 (127.6 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 78/239 (32%), Positives = 136/239 (56%)
Query: 639 TCCAHIFCRSCILKTL--QHTKPC---CPLCRHPLLQSDLFSS-PPESSDMDIAGKTLKN 692
T C H FC C+ + + Q++K CP CR+ + L + S+ ++ K
Sbjct: 930 TECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDACRLLALVQTNSNSKNLEFKPYSP 989
Query: 693 FT-SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFK----LLRLDGS 747
+ SSK++A +D + V+FSQF L +LE+ L K + + DG
Sbjct: 990 ASKSSKITALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGR 1049
Query: 748 MNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMD 807
++ K+R V+ +F +LL SLKA G G+NLT AS ++++PWW+P++E+QA+D
Sbjct: 1050 LSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAID 1109
Query: 808 RVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
R+HRIGQ VK++R I+++SIEE++L +Q++K+ + EA ++R+ +++++L
Sbjct: 1110 RLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIG-EAMDTDEDERRKRRIEEIQML 1167
Score = 278 (102.9 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 72/217 (33%), Positives = 114/217 (52%)
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
E+ + S + + ++R+I+DE H I+N S+ V L K +WV+TGTPI N DL+
Sbjct: 662 EDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLY 721
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQGNRK-GLSRLQVLMSTISLRRTKD------KGL 521
SL+ FL+ +P+ +YW++ + P N K + ++ + LRRTK K L
Sbjct: 722 SLVKFLELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPL 781
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQI 581
+ L PK + + S + LY L KA+ V+ I G L++ YST+L +LRLRQ+
Sbjct: 782 VELPPKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQV 841
Query: 582 CTNLALCPSDVRSIIPSNTIEDVSNNPDLL-KKLVEV 617
C + L S ED+S N L+ ++ VE+
Sbjct: 842 CCHPGLIGSQ------DENDEDLSKNNKLVTEQTVEL 872
Score = 70 (29.7 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 248 LRGGIFADDMGLGKTLTLLSLI 269
++GGI +D+MGLGKT+ SL+
Sbjct: 525 IKGGILSDEMGLGKTVAAYSLV 546
Score = 70 (29.7 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 27/94 (28%), Positives = 40/94 (42%)
Query: 325 NTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEE-HTVPGMLKTYMYY 383
NT + DN+ S NK K TLIV P S+ + W + + + P M +YY
Sbjct: 565 NTAVSDNLP--STWQDNKKP--YASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHE-VYY 619
Query: 384 GDRTQDVEELKMYD-----LVLTTYSTLAIEESW 412
G ++ L +VLTTY ++ W
Sbjct: 620 GGNVSSLKTLLTKTKTPPTVVLTTYGI--VQNEW 651
Score = 61 (26.5 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 196 VIKSELFVHQKEGLGWLVRRE 216
V K EL +QK+GL W++RRE
Sbjct: 432 VFKLELRNYQKQGLTWMLRRE 452
Score = 54 (24.1 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 33/126 (26%), Positives = 60/126 (47%)
Query: 64 SNAVKVLNTRTD-QVGHIERSVAAVLAPLIDSGMILVEGIV---PNTR-SKGNRF--KIP 116
++ V++ + + D ++G + +A +L PL+ S I E + N R S G+ F ++
Sbjct: 225 ASLVRIFDIQYDREIGRVSEDIAQILYPLLSSHEISFEVTLIFCDNKRLSIGDSFILQLD 284
Query: 117 CQVH--IFT-RLEMFSIVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEI 173
C + IF R + S++K EGG + N +FG + + + E K + +
Sbjct: 285 CFLTSLIFEERNDGESLMKRRRTEGGNKREKDNG-NFG--RTLTETDEELESRSKRL-AL 340
Query: 174 FKLVDK 179
KL DK
Sbjct: 341 LKLFDK 346
Score = 42 (19.8 bits), Expect = 8.0e-30, Sum P(4) = 8.0e-30
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 535 ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLS 573
E SL + L ++G G++ D + G + YS VLS
Sbjct: 513 EFSLAKPILKTMIKG---GILSDEMGLGKTVAAYSLVLS 548
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 339 (124.4 bits), Expect = 5.0e-59, Sum P(5) = 5.0e-59
Identities = 81/240 (33%), Positives = 134/240 (55%)
Query: 640 CCAHI-FCRSCILKT-LQHTKPCCPLCRH--PLLQSDLFSSPPESSDMDIAGKTLK---- 691
CC H+ +S + T L+ L L S+ S P +S + + GK+ K
Sbjct: 927 CCCHLSLLKSALDPTELKSEGLALSLEEQLSALTLSEFHDSEPSAS-VSLNGKSFKVELF 985
Query: 692 --NFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749
S+K+S+ R + KSV+ SQ+ ML ++ L+ GF +DGS+N
Sbjct: 986 DDKRESTKISSLLAELEAVRRNSGSQKSVIVSQWTSMLKVVALHLKRCGFTYATIDGSVN 1045
Query: 750 AKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRV 809
K+R ++E F +P GP V+L SL A G G+NLT + +FLL+ WNP++E+QA DR+
Sbjct: 1046 PKQRMDLVEAFNSPR--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRI 1103
Query: 810 HRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+R+GQ++DV I + + ++EE+IL+LQ++KK LA++ + ++S DL++L +
Sbjct: 1104 YRVGQQKDVVIHKFVCEETVEEKILQLQEKKKDLAKQILSGSEEFVTKLSLADLKVLFGI 1163
Score = 287 (106.1 bits), Expect = 5.0e-59, Sum P(5) = 5.0e-59
Identities = 71/197 (36%), Positives = 108/197 (54%)
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIE------ESWL----------ESPVKKIEWWRVILD 428
+R Q + L YD+V+TTYS LA E + + SP+ ++ W R+ILD
Sbjct: 679 NRNQHAKVLSTYDIVITTYSLLAKEIPTAKQDEQIPGANPSVEGTSSPLLRVVWARLILD 738
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH +KN Q S V L A+ RW VTGTPIQN D++SL+ FL+ PF W+S
Sbjct: 739 EAHNVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFKLWKSQ 798
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERK 542
+ G++KG RL +L ++ LRRTKD K L+ L + + ++++LS +E
Sbjct: 799 VDN----GSKKGGERLNILTRSLLLRRTKDQLDSTGKPLVVLPHRKFQLHHLKLSEDEET 854
Query: 543 LYDELEGKAKGVVQDYI 559
+Y L +++ +Q Y+
Sbjct: 855 VYSVLFARSRLALQYYL 871
Score = 134 (52.2 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 341 NKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLV 399
N SS F TLI+CP S+ W ++E+H L+ +Y+G +R Q + L YD+V
Sbjct: 635 NDSSEFTSHG-TLIICPASLIHHWKNEVEKHVSHNRLRVCLYHGPNRNQHAKVLSTYDIV 693
Query: 400 LTTYSTLAIE 409
+TTYS LA E
Sbjct: 694 ITTYSLLAKE 703
Score = 93 (37.8 bits), Expect = 5.0e-59, Sum P(5) = 5.0e-59
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALDK 273
RGGI ADDMGLGKTLT+++LI K
Sbjct: 594 RGGILADDMGLGKTLTMIALILTQK 618
Score = 56 (24.8 bits), Expect = 5.0e-59, Sum P(5) = 5.0e-59
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 197 IKSELFVHQKEGLGWLVRRENSE 219
+K L HQK+ L WL+ RE+ +
Sbjct: 570 LKISLLPHQKQALAWLLWRESQK 592
Score = 55 (24.4 bits), Expect = 5.0e-59, Sum P(5) = 5.0e-59
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 561 AGSLMRNYST-VLSILLRLRQICTNLALCPS 590
AGS + + +LS LLRLRQ C +L+L S
Sbjct: 906 AGSQATSSAVHILSQLLRLRQCCCHLSLLKS 936
Score = 47 (21.6 bits), Expect = 5.2e-27, Sum P(4) = 5.2e-27
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNL 784
+V +EFG+ GPG T A +A+ + V++
Sbjct: 891 RVAQEFGSSGPGPST---AGSQATSSAVHI 917
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 332 (121.9 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 72/177 (40%), Positives = 103/177 (58%)
Query: 694 TSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR 753
TS+K+ K+PT K ++FSQF L L P + G K L G ++ +R
Sbjct: 863 TSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAER 922
Query: 754 AQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIG 813
Q + F P VLL SLKA G+NLT A+ V +L+P+WNP +EEQA+DR HRIG
Sbjct: 923 NQALINF-EVDPN-VRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIG 980
Query: 814 QKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKG-KDQREVSTDDLRILMSL 869
Q + V I+R++ N+IEER+L LQDRK++L A KG ++ ++T +L L +
Sbjct: 981 QDKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISRLNTKELSFLFGM 1037
Score = 284 (105.0 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 77/250 (30%), Positives = 126/250 (50%)
Query: 416 PVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQ 475
P + EW+RVILDEA IKN N +R L + RW ++GTP+QNG + +SL+ FL+
Sbjct: 527 PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLR 586
Query: 476 FEPFSVKSYWQSLIQRPLAQG-NRKG-LSRLQVLMSTISLRRTKD-----KGLIGLQPKT 528
+P+S S + PL+ N + R + L+ + LRRTK+ K ++ L PKT
Sbjct: 587 IKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKT 646
Query: 529 IEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALC 588
K +LS E + Y+ L+ A+ ++ Y+ G++ +Y ++L +LLRLRQ C + L
Sbjct: 647 AVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLI 706
Query: 589 PSDVRSIIPSNTIED----VSNN--PDLLK--KLVEVLQDGEDFXXXXXXXXXXXXXXTC 640
+ ++ +++ + + N P+ + KL+E LQ
Sbjct: 707 VAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQ-----CSLCMDVVAELLIIVP 761
Query: 641 CAHIFCRSCI 650
C H CR C+
Sbjct: 762 CGHFLCRECL 771
Score = 99 (39.9 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 28/88 (31%), Positives = 42/88 (47%)
Query: 329 DDNVKGKSVGML----NKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKT-YMYY 383
DD GK+V L + K TLI+ P S+ W ++ P T Y+++
Sbjct: 416 DDMGLGKTVQALALLVTRPPESKSVKTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHH 475
Query: 384 GDRTQD--VEELKMYDLVLTTYSTLAIE 409
G + E+L YD+VLTTY+ +A E
Sbjct: 476 GSSKKHKIAEQLMSYDIVLTTYNVIAYE 503
Score = 75 (31.5 bits), Expect = 3.9e-56, Sum P(4) = 3.9e-56
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 249 RGGIFADDMGLGKTLTLLSLI 269
+GGI ADDMGLGKT+ L+L+
Sbjct: 410 KGGILADDMGLGKTVQALALL 430
Score = 67 (28.6 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 146 NDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQ 205
N F LS++ K + ++ + ++E+FK +D+ + + L HQ
Sbjct: 339 NIEGFNLSDSNNQKVQDDQQ--QQLEELFKDLDEQLVNDPTIREGTPAGLI--PTLMEHQ 394
Query: 206 KEGLGWLVRRENSEE 220
KEGL WL R E S +
Sbjct: 395 KEGLMWLKRLEESSK 409
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 276 (102.2 bits), Expect = 8.5e-58, Sum P(6) = 8.5e-58
Identities = 61/179 (34%), Positives = 104/179 (58%)
Query: 692 NFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAK 751
++ S K+ +KK K V+ SQ+ +L L+E ++++GFK + G + K
Sbjct: 913 DYLSCKIKNTLEIVENIMEKKE--KVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVK 970
Query: 752 KRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHR 811
R + ++ F N GG V+L SL A G G+NLT + + +++ WNPA+E+QA DR++R
Sbjct: 971 DRQERVDSF-NREKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYR 1029
Query: 812 IGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKG-KDQREVSTDDLRILMSL 869
+GQK+DV I RL+ + +IE+R++ LQ K LA + +++T D+++L L
Sbjct: 1030 MGQKKDVFIHRLVTKGTIEQRVVMLQKDKVALASSVLDGNATRKMNKLTTADIKMLFGL 1088
Score = 249 (92.7 bits), Expect = 8.5e-58, Sum P(6) = 8.5e-58
Identities = 60/167 (35%), Positives = 93/167 (55%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAF 473
+S + +I W RVILDEAH IKN + S+ V L+A RW ++GTPI N +DL+SL+ F
Sbjct: 642 DSVLAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRF 701
Query: 474 LQFEPFSVKSYWQSLIQ--RPLAQGNRKGLSRLQVLMSTISLRRTKDKG-------LIGL 524
L+ PFS YW+ I +P+ R+ +L + LRRTKD+ L+ L
Sbjct: 702 LRIRPFSDDKYWKESIMPMKPIMA------DRVNLLTKNLLLRRTKDQTCAVTNQKLVQL 755
Query: 525 QPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
PK +E + +EL +E + Y+ + AK V+ + + M+N+ +
Sbjct: 756 PPKNVEVHELELDGDEAQAYEIMMEAAKKFVKKLLQDSNDMKNHGFI 802
Score = 112 (44.5 bits), Expect = 8.5e-58, Sum P(6) = 8.5e-58
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ 388
DD K K + K + TLIV P S+ W +++ +L TYM++G + Q
Sbjct: 527 DD--KDKEKRKVVKEQGLIPSNGTLIVAPASLIHQWDAEIDRRLDDSVLSTYMFHGTKKQ 584
Query: 389 ---DVEELKMYDLVLTTYSTLAIE 409
D L YD+V+TT++ +A E
Sbjct: 585 RDIDARRLARYDVVITTFNLIANE 608
Score = 103 (41.3 bits), Expect = 8.5e-58, Sum P(6) = 8.5e-58
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 242 DKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLD 288
+ +P+P GGI ADDMGLGKTL+++SLIA K A A G + D
Sbjct: 486 ETQPQP--GGILADDMGLGKTLSMISLIAHQKAARRARREDGNDDKD 530
Score = 70 (29.7 bits), Expect = 8.5e-58, Sum P(6) = 8.5e-58
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 561 AGSLMRNYSTVLSILLRLRQICTNLALCPS----DVRSIIPSNTIEDVSNNPDLLKKLVE 616
AGS S VL +LLRLRQ C + + + D S+I + E+ N D L +L+E
Sbjct: 828 AGSNFEKMSCVLMLLLRLRQACVHFNITKTGVDMDAFSLIGGDNAEEA--NVDDLNELLE 885
Score = 53 (23.7 bits), Expect = 8.5e-58, Sum P(6) = 8.5e-58
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 198 KSELFVHQKEGLGWLVRRENSEE 220
K EL HQK GL W+ RE +
Sbjct: 468 KLELMPHQKAGLTWMRWRETQPQ 490
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 332 (121.9 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 79/243 (32%), Positives = 130/243 (53%)
Query: 640 CCAHIFCRSCILKTLQHTK---PCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTS- 695
CC H+ S + KTL ++ L L + S P +S + D +F+S
Sbjct: 911 CCCHL---SLLKKTLDQSELQGDGVALSLEEQLCALSLSEPSDSENKDTVSLNGSHFSSE 967
Query: 696 --------SKVSAXXXXXXXXRDKKPTTKS-VVFSQFRKMLILLEEPLQAAGFKLLRLDG 746
+K+S+ + KS V+ SQ+ ML ++ L+ G K +DG
Sbjct: 968 LFQDTRESTKISSILTESDFIHSDRNCQKSFVIVSQWTSMLKIVAVHLEKMGLKFAVIDG 1027
Query: 747 SMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAM 806
++N K+R ++EEF N P GP V+L SL A G G+NL + +FL++ WNPA+E+QA
Sbjct: 1028 TVNPKRRMDLVEEF-NTNPKGPQVMLVSLCAGGVGINLIGGNHLFLIDMHWNPALEDQAC 1086
Query: 807 DRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
DR++R+GQ +DV I R + ++E++I LQ++KK+LA++ G ++S DLR++
Sbjct: 1087 DRIYRVGQSKDVTIHRFVCDGTVEDKISSLQEKKKELAQKVLSGTGSSFTKLSLADLRVI 1146
Query: 867 MSL 869
+
Sbjct: 1147 FGV 1149
Score = 283 (104.7 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 59/150 (39%), Positives = 90/150 (60%)
Query: 416 PVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQ 475
P+ ++ W RVILDEAH IKN Q S V L A+ RW VTGTPIQN D++SL+ FL+
Sbjct: 709 PLLRVAWARVILDEAHSIKNPKVQTSMAVCKLRARSRWAVTGTPIQNNLLDMYSLLKFLR 768
Query: 476 FEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTI 529
PF W++ + G+++G RL +L + LRRTKD K L+ L +T
Sbjct: 769 CSPFDEYKLWKAQVDN----GSKRGGERLNILTRALLLRRTKDQLDATGKPLVSLPDRTC 824
Query: 530 EKYYVELSLEERKLYDELEGKAKGVVQDYI 559
E + ++LS +E+ +YD + +++ +Q+Y+
Sbjct: 825 EIHRLKLSEDEQAVYDVVFAQSRSTLQNYL 854
Score = 129 (50.5 bits), Expect = 1.3e-41, Sum P(5) = 1.3e-41
Identities = 47/193 (24%), Positives = 94/193 (48%)
Query: 344 SSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTT 402
SS + + TLI+CP S+ W ++++ L Y+Y+G +R + L +D+V+TT
Sbjct: 619 SSIVASQGTLIICPASLVHHWKKEIDKRVKSSRLTVYLYHGPNRQRSASVLAEHDVVITT 678
Query: 403 YSTLA----IEESWLESPVKKIEWWRVILDEAHVIKNANAQ----QSRTVTNLNAKRRWV 454
YS ++ +++ E P K + V D +++ A A+ ++ ++ N +
Sbjct: 679 YSLVSKEIPVQKEDAEKPSKDSD--HVASDLPPLLRVAWARVILDEAHSIKNPKVQTSMA 736
Query: 455 VTGTPIQN-----GS---FDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQV 506
V ++ G+ +L + + L+F S ++ L + + G+++G RL +
Sbjct: 737 VCKLRARSRWAVTGTPIQNNLLDMYSLLKFLRCSPFDEYK-LWKAQVDNGSKRGGERLNI 795
Query: 507 LMSTISLRRTKDK 519
L + LRRTKD+
Sbjct: 796 LTRALLLRRTKDQ 808
Score = 87 (35.7 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDK 273
GGI ADDMGLGKTLT+++LI K
Sbjct: 581 GGILADDMGLGKTLTMIALILSQK 604
Score = 57 (25.1 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 571 VLSILLRLRQICTNLAL 587
+LS+LLRLRQ C +L+L
Sbjct: 901 ILSLLLRLRQCCCHLSL 917
Score = 56 (24.8 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 197 IKSELFVHQKEGLGWLVRRENSE 219
+K EL HQK L WL+ RE +
Sbjct: 556 LKVELLPHQKRALTWLLWRETQK 578
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 307 (113.1 bits), Expect = 3.1e-56, Sum P(5) = 3.1e-56
Identities = 65/175 (37%), Positives = 106/175 (60%)
Query: 695 SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754
S+KVS+ + + KSV+ SQ+ ML ++ L+ +DGS+N K+R
Sbjct: 966 STKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRM 1025
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ 814
++E F + GP V+L SL A G G+NLT + +FLL+ WNP++E+QA DR++R+GQ
Sbjct: 1026 DLVEAFNHSQ--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQ 1083
Query: 815 KEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
K+DV I R + ++EE+IL+LQ++KK LA++ +++ DL+IL +
Sbjct: 1084 KKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSEGPVTKLTLADLKILFGI 1138
Score = 298 (110.0 bits), Expect = 3.1e-56, Sum P(5) = 3.1e-56
Identities = 73/197 (37%), Positives = 109/197 (55%)
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIE------ESWL----------ESPVKKIEWWRVILD 428
+R++ + L YD+V+TTYS LA E E + +P+ ++ W R+ILD
Sbjct: 654 NRSRHAKVLSTYDIVITTYSLLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILD 713
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH +KN Q S V L A+ RW VTGTPIQN D++SLM FL+ PF S W+S
Sbjct: 714 EAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEFSLWKSQ 773
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERK 542
+ G+ KG RL +L ++ LRRTKD K L+ L + + + ++LS +ER
Sbjct: 774 VDN----GSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERA 829
Query: 543 LYDELEGKAKGVVQDYI 559
+YD +++ +Q Y+
Sbjct: 830 VYDIFLARSRSALQSYL 846
Score = 138 (53.6 bits), Expect = 7.7e-40, Sum P(5) = 7.7e-40
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 327 KMDDNVKGKSVGMLNKS-SSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG- 384
K + + + V L+K+ SS TLIVCP S+ W ++E+ L+ Y+Y+G
Sbjct: 594 KSKEKERSEPVTWLSKNDSSVFTSSGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGP 653
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIE 409
+R++ + L YD+V+TTYS LA E
Sbjct: 654 NRSRHAKVLSTYDIVITTYSLLAKE 678
Score = 88 (36.0 bits), Expect = 3.1e-56, Sum P(5) = 3.1e-56
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALDK 273
+GGI ADDMGLGKTLT+++LI K
Sbjct: 566 QGGILADDMGLGKTLTMIALILTKK 590
Score = 58 (25.5 bits), Expect = 3.1e-56, Sum P(5) = 3.1e-56
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 197 IKSELFVHQKEGLGWLVRRENSE 219
+K L +HQK+ L WL+ RE+ +
Sbjct: 542 LKVPLLLHQKQALAWLLWRESQK 564
Score = 55 (24.4 bits), Expect = 3.1e-56, Sum P(5) = 3.1e-56
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 571 VLSILLRLRQICTNLALCPS 590
VLS LLRLRQ C +L+L S
Sbjct: 892 VLSQLLRLRQCCCHLSLLKS 911
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 327 (120.2 bits), Expect = 5.5e-54, Sum P(3) = 5.5e-54
Identities = 97/291 (33%), Positives = 140/291 (48%)
Query: 389 DVEELKMYDLVLTTYSTLAIEESWLES-----PVK----------KIEWWRVILDEAHVI 433
D EL YD+VLTTYS LA E ++ P + W+R++LDEAH I
Sbjct: 343 DSYELSQYDVVLTTYSMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTI 402
Query: 434 KNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPL 493
+N + ++ L+AK RW ++GTPIQN + +SL+ FL+ +P+ V S + I RPL
Sbjct: 403 RNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPL 462
Query: 494 ----AQGNRKGLSRLQVLMSTISLRRTKDKG-----LIGLQPKTIEKYYVELSLEERKLY 544
A L RL++L+++ RRTK+ ++ L PKTI V L EER LY
Sbjct: 463 KSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALY 522
Query: 545 DELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDV 604
+E A+ +V +Y N + Y +L LLRLRQ C + L S S+ S I D
Sbjct: 523 NEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSS--SLDNSFRIRDS 580
Query: 605 SNNPDLLKKL----VEVLQDGEDFXXXXXXXXXXXXXXTC-CAHIFCRSCI 650
N + K L +E + +DF C H C+ C+
Sbjct: 581 ENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECM 631
Score = 290 (107.1 bits), Expect = 5.5e-54, Sum P(3) = 5.5e-54
Identities = 62/162 (38%), Positives = 100/162 (61%)
Query: 687 GKTLKNF-TSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLD 745
GK + +SSK++ K K +V+SQF + L L+ L+ + +R D
Sbjct: 713 GKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYD 772
Query: 746 GSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQA 805
G+M+A +R + + F N V+L SLKA G+NLT A+ V L EP++NP++E+QA
Sbjct: 773 GTMSANQRQKSLHSFNNDKD--VLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQA 830
Query: 806 MDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREA 847
+DRVHR+GQ++ V + R I +++IEERI+ +Q +K++L +EA
Sbjct: 831 IDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEA 872
Score = 140 (54.3 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 61/211 (28%), Positives = 89/211 (42%)
Query: 481 VKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLR----RTKDKGLIGLQPKTIEKYYVEL 536
+KSY +++ L K L R+ +L ST+ R R + ++ L PKTI V L
Sbjct: 462 LKSYRADIVEAAL-----KRL-RI-LLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNL 514
Query: 537 SLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSII 596
EER LY+E A+ +V +Y N + Y +L LLRLRQ C + L S S+
Sbjct: 515 LPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSS--SLD 572
Query: 597 PSNTIEDVSNNPDLLKKL----VEVLQDGEDFXXXXXXXXXXXXXXTC-CAHIFCRSCIL 651
S I D N + K L +E + +DF C H C+ C+
Sbjct: 573 NSFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMS 632
Query: 652 KTL------QHTKPC---CPLCRHPLLQSDL 673
+ T CP+CR ++Q L
Sbjct: 633 MLVGQKYGSSSTSTIIAKCPMCRGNIVQDSL 663
Score = 74 (31.1 bits), Expect = 5.5e-54, Sum P(3) = 5.5e-54
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDK 273
GG+ ADDMGLGKT+ ++L+ K
Sbjct: 271 GGVMADDMGLGKTIQTIALLLTQK 294
Score = 50 (22.7 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 201 LFVHQKEGLGWLVRRENSEELPPFW-EEKG-GGFVNVLTNYHTDKRPEPLR 249
L HQ EG W+ E S + ++ G G + + T K +PLR
Sbjct: 250 LLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALLLTQKSQDPLR 300
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 330 (121.2 bits), Expect = 2.9e-53, Sum P(5) = 2.9e-53
Identities = 85/237 (35%), Positives = 125/237 (52%)
Query: 316 ARGKKHKTVNTKMDD-NVKGKSV-GMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTV 373
+ GK + + DD N K KSV G +K + TL+VCP S+ W +++E
Sbjct: 489 SEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVS 548
Query: 374 PGMLKTYMYYGD-RTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHV 432
L +++G+ R + L+ YD+V+TTY +A E L S V ++W R+ILDEAHV
Sbjct: 549 RQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHKSL-SAVFGVKWRRIILDEAHV 607
Query: 433 IKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRP 492
++N +Q S V +L K RW +TGTPIQN D+++L+ FL+ PF W+ I
Sbjct: 608 VRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWIDNK 667
Query: 493 LAQGNRKGLSRLQVLMSTISLRRTK-----DKGLIGLQPKTIEKYYVELSLEERKLY 544
A G +RL +LM ++ LRRTK D L L K + + L EE +Y
Sbjct: 668 SAGGQ----NRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVY 720
Score = 257 (95.5 bits), Expect = 2.9e-53, Sum P(5) = 2.9e-53
Identities = 61/175 (34%), Positives = 97/175 (55%)
Query: 695 SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754
SSK++ K K++V SQ+ +L +L + L G L L+G++ K R
Sbjct: 889 SSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQ 948
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ 814
++ EF N VLL SL A G G+NL A+ + LL+ WNP +E QA DR++R+GQ
Sbjct: 949 DIVNEF-NDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQ 1007
Query: 815 KEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
K++V I + + +++E+RI LQD+K LA + K +++ DDL+ L +
Sbjct: 1008 KKNVIIYKFMCVDTVEQRIKGLQDKKLDLA-DGVLTGAKVSSKLTIDDLKGLFGM 1061
Score = 86 (35.3 bits), Expect = 2.9e-53, Sum P(5) = 2.9e-53
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 249 RGGIFADDMGLGKTLTLLSLI 269
RGGI ADDMGLGKTLT++S +
Sbjct: 459 RGGILADDMGLGKTLTMISSV 479
Score = 52 (23.4 bits), Expect = 2.9e-53, Sum P(5) = 2.9e-53
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 571 VLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPD 609
+L +LLRLRQIC + L + + S T+ D S++ D
Sbjct: 788 ILVLLLRLRQICCHPGLIDAMLDGE-ESQTMGDHSSDSD 825
Score = 47 (21.6 bits), Expect = 2.9e-53, Sum P(5) = 2.9e-53
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELP 222
+K L HQK L W+ RE +LP
Sbjct: 435 LKVSLMNHQKHALAWMSWRER--KLP 458
Score = 38 (18.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 846 EAFRRKGKDQREVSTDDLRILM 867
E F R ++EV + D+ +L+
Sbjct: 771 EKFARMAGSKKEVKSHDILVLL 792
Score = 38 (18.4 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 389 DVEELKMYDLVLTTYSTL 406
D EE+ +Y V+T TL
Sbjct: 713 DKEEMNVYQTVMTYSRTL 730
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 391 (142.7 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 94/235 (40%), Positives = 126/235 (53%)
Query: 641 CAHIFCRSCILKTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKT-------LKN 692
C H FCR+C + T +P CP C H +L DL P D ++ K ++N
Sbjct: 752 CKHEFCRACASSYVNSTPQPTCPRC-HIVLSIDL-EQPEIEQDQEMTKKNSIINRIRMEN 809
Query: 693 FTSS-KVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAK 751
+TSS K+ R + KS++FSQF ML L+E L+ AG + LDGSM
Sbjct: 810 WTSSTKMEMLVHSLQKLRSDNSSHKSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTPA 869
Query: 752 KRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHR 811
+RA I+ F N L SLKA G +NLT ASRVF+++PWWNPA E Q+ DRVHR
Sbjct: 870 QRAASIDHFMNNVD--VECFLVSLKAGGVALNLTEASRVFIVDPWWNPAAEWQSADRVHR 927
Query: 812 IGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
IGQ V I RL + +SIE RI+ELQ++K K+ + +DL+ L
Sbjct: 928 IGQTRPVVITRLCIEDSIESRIVELQEKKTKMINSTVNSDDVALDSLEPEDLQFL 982
Score = 191 (72.3 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 49/153 (32%), Positives = 83/153 (54%)
Query: 344 SSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLK-TYMYYGDRTQDVE--ELKMYDLVL 400
S + KK +L++ PP W+++++ +T + Y +T+ + ELK YD+++
Sbjct: 425 SDWPAKKPSLVLAPPVALMQWMSEIQSYTEGTLKTIVYHGSNAKTKKMTKAELKGYDVII 484
Query: 401 TTYSTL----AIEESWL---------ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNL 447
+Y++L A +E + +S + I++ RVILDEAH IK+ S+ L
Sbjct: 485 MSYNSLQSMYAKQEKGVSKKDGIYKEKSLLHSIDFHRVILDEAHYIKSRTTMTSKACLAL 544
Query: 448 NAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480
RW +TGTP+QN + FSL+ FL+ EPF+
Sbjct: 545 KTTYRWCLTGTPLQNRIGEFFSLVRFLKIEPFA 577
Score = 70 (29.7 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALD 272
+GG+ D+MGLGKT+ +SL+ D
Sbjct: 403 KGGLLGDEMGLGKTIQAVSLVMSD 426
Score = 64 (27.6 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 503 RLQVLMSTISLRRTKDKGLIGLQ-P-KTI---EKYYVELSLEERKLYDELEGKAKGVVQD 557
+L++L S I LRR K + ++ P K I +++ E+ E+ L + +
Sbjct: 636 KLRLLTSKIMLRRQKKDHMDSMELPLKEIIIDRQFFGEV---EKDLAGSIMHNNQRKFDT 692
Query: 558 YINAGSLMRNYSTVLSILLRLRQI 581
Y+ G ++ NY+ + +L ++RQ+
Sbjct: 693 YVAQGVVLNNYANIFGLLSQMRQV 716
Score = 38 (18.4 bits), Expect = 1.0e-33, Sum P(3) = 1.0e-33
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 143 ISGNDV---SFGLSEAMVVKERKGERGVKSVDEIFK 175
+ G DV S+ ++M K+ E+GV D I+K
Sbjct: 477 LKGYDVIIMSYNSLQSMYAKQ---EKGVSKKDGIYK 509
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 303 (111.7 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 69/181 (38%), Positives = 107/181 (59%)
Query: 690 LKNF-TSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSM 748
L +F TS+K+ A ++ + K++VFSQF L L+ L +G ++L GSM
Sbjct: 500 LDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSM 559
Query: 749 NAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDR 808
+ + ++ F P VLL SL+A G +NLTAAS VF+++PWWNPAVE QA DR
Sbjct: 560 SKAAKDAALKNFKEE-PDC-RVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDR 617
Query: 809 VHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQ-REVSTDDLRILM 867
+HRIGQ + V++VR I+ ++EE+IL LQ +K+ L + +++ DD++ L
Sbjct: 618 IHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQKLGEDDIKSLF 677
Query: 868 S 868
+
Sbjct: 678 A 678
Score = 289 (106.8 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 84/251 (33%), Positives = 130/251 (51%)
Query: 342 KSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-RTQDVEELKMYDLVL 400
KS +G TL++ PP S W+ ++ T PG + Y+G R ++V++L YD VL
Sbjct: 184 KSREAVGH--TLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVL 241
Query: 401 TTYSTLAIE----ESWLE--SPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
TT + E E E SP+ I+W R+I+DEAH IKN +++ ++ V L A RW
Sbjct: 242 TTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWA 301
Query: 455 VTGTPIQNGSFDLFSLMA--FLQFEPFSVKSYWQSLIQRPLAQG-NRKGLSRLQVLMSTI 511
++GTP+QN +L+SL++ FL F + S+ A+ K L +L +I
Sbjct: 302 LSGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTVKFLIGGNILPLSI 361
Query: 512 SLRRTKDKGLIGLQPKTI--EKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYS 569
+R ++ +Q T K LS+ E Y+ L +K YI AG+LM NY+
Sbjct: 362 PVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYA 421
Query: 570 TVLSILLRLRQ 580
+ +L+RLRQ
Sbjct: 422 HIFGLLIRLRQ 432
Score = 76 (31.8 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 248 LRGGIFADDMGLGKTLTLLSLI 269
+RGGI AD+MG+GKT+ +SL+
Sbjct: 153 VRGGILADEMGMGKTIQAISLV 174
Score = 39 (18.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 435 NANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
NAN N KR+W + +Q D F
Sbjct: 80 NANDYIPNPAAPANTKRKWQIMKEKVQMTEDDDF 113
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 418 (152.2 bits), Expect = 5.4e-52, Sum P(3) = 5.4e-52
Identities = 128/410 (31%), Positives = 195/410 (47%)
Query: 484 YWQSLIQRPLAQGNRKGLS-RLQVLMS-----TISLRRTK--DKGLIGLQPKTIEKYYVE 535
+W + +P+ GL R +L+ I LRRTK + L P+ I
Sbjct: 445 WWNKYVAKPITVYGSFGLGKRAMILLKHKVLKDILLRRTKLGRAADLALPPRIITLRRDT 504
Query: 536 LSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSI 595
L ++E Y+ L ++ YI AG+LM NY+ + +L RLRQ + L S
Sbjct: 505 LDVKEFDYYESLYKNSQAEFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSG 564
Query: 596 IPSNTIEDVSNNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCILK-TL 654
+N +++ N + L ED+ T CAH+FC++C++ +
Sbjct: 565 ANANLVDE--NKSEQECGLCH--DPAEDYVV------------TSCAHVFCKACLIGFSA 608
Query: 655 QHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNF---------------TSSKVS 699
K CP C LL D + ++ + TLK F TS+K+
Sbjct: 609 SLGKVTCPTCSK-LLTVDWTTKA--DTEHKASKTTLKGFRASSILNRIKLDDFQTSTKIE 665
Query: 700 AXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEE 759
A ++ + K++VFSQF L L+ L G ++L GSM R I +
Sbjct: 666 ALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINK 725
Query: 760 FGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVK 819
F P V L SLKA G +NLT AS VF+++PWWNPAVE QA DR+HRIGQ + ++
Sbjct: 726 F-KEDPDC-RVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIR 783
Query: 820 IVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQ-REVSTDDLRILMS 868
+VR I+ N++EERIL LQ +KK+L E ++ +++ +D+R L +
Sbjct: 784 VVRFIIENTVEERILRLQ-KKKELVFEGTVGGSQEAIGKLTEEDMRFLFT 832
Score = 166 (63.5 bits), Expect = 5.4e-52, Sum P(3) = 5.4e-52
Identities = 51/169 (30%), Positives = 78/169 (46%)
Query: 321 HKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIV---CPPSVFSTWITQLEEHTVPGML 377
+ TV ++ N+ V S SF KK+ + + C PS T ++
Sbjct: 248 YSTVESEYRRNIMPSKVQCAYCSKSFYPKKLVIHLRYFCGPSAVKTAKQSKQKRKKTSDS 307
Query: 378 KTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKK------IEWWRVILDEAH 431
+ G E+ K+ T T +E+ L S K+ ++W R+ILDEAH
Sbjct: 308 SSQQ--GKEADAGEDKKLKKSKKKTKQT--VEKDQLGSDDKEKSLLHSVKWNRIILDEAH 363
Query: 432 VIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480
IK + +R V L A RW ++GTP+QN +L+SL+ FLQ P+S
Sbjct: 364 YIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQIRPYS 412
Score = 128 (50.1 bits), Expect = 5.1e-48, Sum P(3) = 5.1e-48
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE 409
TL++CP S W+ ++ T PG K +Y+G R ++++E YD VLTTYST+ E
Sbjct: 196 TLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESE 254
Score = 76 (31.8 bits), Expect = 5.4e-52, Sum P(3) = 5.4e-52
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 243 KRPEPLRGGIFADDMGLGKTLTLLSLI 269
K+ + + GGI AD+MG+GKT+ +SL+
Sbjct: 152 KQEQSVAGGILADEMGMGKTIQAISLV 178
Score = 39 (18.8 bits), Expect = 4.4e-35, Sum P(2) = 4.4e-35
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 361 FSTWITQLEEHTVPGMLKTYMYYGDRTQDV 390
F W T+ E+ G+L M G Q +
Sbjct: 146 FLAWATKQEQSVAGGILADEMGMGKTIQAI 175
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 305 (112.4 bits), Expect = 1.5e-51, Sum P(4) = 1.5e-51
Identities = 68/174 (39%), Positives = 101/174 (58%)
Query: 694 TSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR 753
TS+K+ + K ++FSQF +L LLE P+ G + R DGSM R
Sbjct: 1000 TSAKIEKTMEIIRDIERRDNNEKIIIFSQFTSLLDLLEIPIAREGHRYRRYDGSMKPADR 1059
Query: 754 AQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIG 813
+ +F + P V+L SLKA +G+NL AA+ V + +P+WNP VEEQA+DR HRIG
Sbjct: 1060 NSAVLDFTDD-PSCK-VMLVSLKAGNSGLNLVAANHVIIFDPFWNPYVEEQAVDRAHRIG 1117
Query: 814 QKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRK-GKDQREVSTDDLRIL 866
Q +V + R++V ++E+RI+ELQD+K+ + A K K+ +ST +L L
Sbjct: 1118 QLREVHVHRILVPETVEDRIIELQDKKRAIIDGALDEKESKNIARLSTRELGYL 1171
Score = 293 (108.2 bits), Expect = 1.5e-51, Sum P(4) = 1.5e-51
Identities = 70/213 (32%), Positives = 114/213 (53%)
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480
+W+RVI+DEA IKN Q + LN RW ++GTP+ N +L SL+ FL+ P++
Sbjct: 619 KWYRVIIDEAQCIKNRATQSAIACCRLNTTYRWCMSGTPMMNNVEELHSLLKFLRIRPYA 678
Query: 481 VKSYWQSLIQRPLAQGNR----KGLSRLQVLMSTISLRRTKD-----KGLIGLQPKTIEK 531
++ PL N+ K +++L++L+ + LRRTK K + + P+ EK
Sbjct: 679 NLDRFKRDFSAPLKTNNKHLQEKAMTQLRILLKAVLLRRTKHSKIDGKPIFDIPPRFSEK 738
Query: 532 YYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPS- 590
+ S +E +LY LE K + Y+ AG++ RNYS +L +LLRLRQ C + L
Sbjct: 739 VHAVFSEDELELYKALEAKTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLITDF 798
Query: 591 DVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGED 623
V+ S ++ ++N ++V L+D E+
Sbjct: 799 SVKLNEASEGVDFIANAEQFSNEVVARLRDNEN 831
Score = 128 (50.1 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 37/131 (28%), Positives = 66/131 (50%)
Query: 329 DDNVKGKSVG----MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPG-MLKTYMYY 383
DD GK++ M+++ SS +K TLI+ P ++ W ++E+ PG L+ Y+ +
Sbjct: 497 DDMGLGKTIQAIALMVSRPSSDPERKTTLIIAPVALMQQWKREIEKMLSPGHRLQVYILH 556
Query: 384 GDRTQ-DVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSR 442
GD+ + +LK YD+VLTT+ LA E +K++ + +L + Q +
Sbjct: 557 GDKGRTSFSDLKKYDVVLTTFGMLASE-------LKRVIKYEQLLKDGAEEPTLTRQYLK 609
Query: 443 TVTNLNAKRRW 453
T+ L +W
Sbjct: 610 TLPCLGPTSKW 620
Score = 73 (30.8 bits), Expect = 1.5e-51, Sum P(4) = 1.5e-51
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 249 RGGIFADDMGLGKTLTLLSLI 269
+GGI ADDMGLGKT+ ++L+
Sbjct: 491 KGGILADDMGLGKTIQAIALM 511
Score = 49 (22.3 bits), Expect = 1.5e-51, Sum P(4) = 1.5e-51
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEE 220
+K L HQK GL W+ +E ++
Sbjct: 467 LKYPLLDHQKLGLAWMRSKEECDQ 490
Score = 37 (18.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 600 TIEDVSNNPDLLKKLVEVLQD 620
TIED+ + DL + +++ L +
Sbjct: 7 TIEDLEDELDLQRAILQSLDE 27
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 518 (187.4 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 130/384 (33%), Positives = 208/384 (54%)
Query: 506 VLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLM 565
+L T S + + ++ L P Y ELS ER YD L ++K ++ G ++
Sbjct: 657 MLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVL 716
Query: 566 RNYSTVLSILLRLRQICTN--LALCPSDVRSIIPSNTI----------------EDVSNN 607
NY+++L +LLRLRQ C + L + D N + +DV +
Sbjct: 717 HNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSE 776
Query: 608 PDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQH-TKPCCPLCRH 666
++++VE L+ GE T CAH CR C+L + ++ T CP+CR+
Sbjct: 777 A-FVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRN 835
Query: 667 PLLQSDLFSSPPESS-DMDIAGKTLKNFT-SSKVSAXXXXXXXXRDKKPTTKSVVFSQFR 724
+ + +L ++P ES +D+ KN+ SSK++A R +KS++FSQ+
Sbjct: 836 TVSKQELITAPTESRFQVDVE----KNWVESSKITALLEELEGLRSSG--SKSILFSQWT 889
Query: 725 KMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNL 784
L LL+ PL F +RLDG+++ ++R +V++EF G VLL SLKA G G+NL
Sbjct: 890 AFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDG--SILVLLMSLKAGGVGINL 947
Query: 785 TAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLA 844
TAAS F+++PWWNPAVEEQA+ R+HRIGQ ++VKI R IV+ ++EER+ +Q RK+++
Sbjct: 948 TAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMI 1007
Query: 845 REAFRRKGKDQREVSTDDLRILMS 868
A ++ R ++L++L +
Sbjct: 1008 SGALT--DQEVRSARIEELKMLFT 1029
Score = 474 (171.9 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 105/280 (37%), Positives = 157/280 (56%)
Query: 322 KTVNTKMDD----NVKG-KSVGM---LNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTV 373
K +++ +DD VK K +G L + S + LIVCP ++ W T++E H
Sbjct: 454 KVISSSVDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAK 513
Query: 374 PGMLKTYMYYGD-RTQDVEELKMYDLVLTTYSTLAIEESWLESP----VKKIEWWRVILD 428
PG L Y++YG R +D + L D+V+TTY L E S S + + W+R++LD
Sbjct: 514 PGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLD 573
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH IKN+ +Q S L A RRW +TGTPIQN DL+SL+ FL+ EP+ ++W L
Sbjct: 574 EAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKL 633
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERK 542
+Q+P +G+ +GL +Q ++ I LRRTK + ++ L P Y ELS ER
Sbjct: 634 VQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERD 693
Query: 543 LYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQIC 582
YD L ++K ++ G ++ NY+++L +LLRLRQ C
Sbjct: 694 FYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCC 733
Score = 75 (31.5 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 232 FVNVLTNYHTDKRPEPL---RGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTN 285
++N T T P L RGGI AD MGLGKT+ +SL+ + G N
Sbjct: 393 YLNSFTGDATIHFPSTLQMARGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPN 449
Score = 47 (21.6 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 45 TISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEG 101
T G+ G R L S+ V+ + ++G I A L PL+ I +EG
Sbjct: 149 TTPGKRGFGRGRPALRGA-SDIVRFSTKDSGEIGRIPNEWARCLLPLVRDKKIRIEG 204
Score = 40 (19.1 bits), Expect = 2.6e-51, Sum P(4) = 2.6e-51
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 200 ELFVHQKEGLGWLVRREN---SEE----LPPFWE 226
EL +QK+ L W+ + E ++E L P WE
Sbjct: 347 ELRPYQKQALHWMTQLEKGNCTDEAATMLHPCWE 380
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 255 (94.8 bits), Expect = 8.0e-51, Sum P(6) = 8.0e-51
Identities = 78/241 (32%), Positives = 125/241 (51%)
Query: 392 ELKMYDLVLTTYSTLAIE----ESWLES-------------PVKK---IEWWRVILDEAH 431
+L + D+V+TT++T IE E ++S P+ I WWRVI+DE+
Sbjct: 1092 DLNLMDIVITTHNTFGIEFKKYEEDMQSAYTNNANGNDGSIPLPALLTIHWWRVIIDESQ 1151
Query: 432 VIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS--VKSYWQSLI 489
V K + + NL+A +W ++GTPI N D++ + FL P + +K+ W+ LI
Sbjct: 1152 VCK-IKTLIFKGLQNLDAIHKWCLSGTPISNYLDDIYPSLHFLNCYPIAQDLKT-WRKLI 1209
Query: 490 QRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL-IGLQPKTIEKYYVELSLEERKLYDELE 548
RP K L L+ +++ I LRR K + L L K E Y++ + E YD L
Sbjct: 1210 DRP------KNLELLKKVINPILLRREKSEILDFKLPKKNKEIVYLDFNENEADDYDTLF 1263
Query: 549 GKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPS-DVRSIIPSNTIEDVSNN 607
A+ +Q G +++NY+TVL++LLRLRQ C + L D + + N+ +D++ N
Sbjct: 1264 SVAQETLQKISCRGGILKNYATVLALLLRLRQCCDHFHLIRHIDTSTDVICNSCKDIAVN 1323
Query: 608 P 608
P
Sbjct: 1324 P 1324
Score = 252 (93.8 bits), Expect = 8.0e-51, Sum P(6) = 8.0e-51
Identities = 56/133 (42%), Positives = 83/133 (62%)
Query: 716 KSVVFSQFRKMLILLEEPLQ----AAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVL 771
K ++ SQ+ ML L+EE L+ +R DG + +++ + I++ V+
Sbjct: 1477 KCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQKDKAIKQLNEDDD--VRVM 1534
Query: 772 LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831
L SLK+ G G+NLT A+RV++++PWWN A E QA RVHRIGQ +V + R I+ NSIE
Sbjct: 1535 LVSLKSGGVGLNLTRANRVYMVDPWWNEASEVQAEGRVHRIGQTREVFVKRYIMNNSIEI 1594
Query: 832 RILELQDRKKKLA 844
RILELQ+ K ++A
Sbjct: 1595 RILELQESKNEIA 1607
Score = 126 (49.4 bits), Expect = 8.0e-51, Sum P(6) = 8.0e-51
Identities = 27/97 (27%), Positives = 56/97 (57%)
Query: 319 KKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVP---G 375
++ K ++ D ++ ++ + + S K TLI+CPPS+ S W +++++H P
Sbjct: 1013 RQQKEAYDEIKDQLRNRNQQLRSFQKSVPKPKATLIICPPSLVSQWKSEIKKHLKPDYFN 1072
Query: 376 MLKTYMYYG-DRTQDVE--ELKMYDLVLTTYSTLAIE 409
L+ + Y+G +R + + +L + D+V+TT++T IE
Sbjct: 1073 KLEIFEYHGANRKKKLSGVDLNLMDIVITTHNTFGIE 1109
Score = 65 (27.9 bits), Expect = 8.0e-51, Sum P(6) = 8.0e-51
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 243 KRPEPLRGGIFADDMGLGKTLTLLSLI 269
K + GG+ D+MGLGKT+ ++LI
Sbjct: 976 KSKHKIAGGLLCDEMGLGKTVMSIALI 1002
Score = 64 (27.6 bits), Expect = 8.0e-51, Sum P(6) = 8.0e-51
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 197 IKSELFVHQKEGLGWLVRRE 216
+KS+L HQKEGL W++ RE
Sbjct: 910 LKSQLKHHQKEGLWWMLGRE 929
Score = 49 (22.3 bits), Expect = 8.0e-51, Sum P(6) = 8.0e-51
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 641 CAHIFCRSCILKTLQHTK------PCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLK--- 691
C H FC C +++ CP C L+ D ++ + S+ GK++K
Sbjct: 1329 CGHDFCLDCFEDLVRNPDNNNNRVSLCPECDSELILQD--NTNGDDSNNKNNGKSIKKIA 1386
Query: 692 NFTSSKVS 699
N +SK S
Sbjct: 1387 NLNNSKKS 1394
Score = 47 (21.6 bits), Expect = 7.3e-29, Sum P(5) = 7.3e-29
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 585 LALCPS-DVRSIIPSNTIEDVSNNPDLLKKLVEV 617
++LCP D I+ NT D SNN + K + ++
Sbjct: 1352 VSLCPECDSELILQDNTNGDDSNNKNNGKSIKKI 1385
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 525 (189.9 bits), Expect = 1.2e-50, Sum P(2) = 1.2e-50
Identities = 134/385 (34%), Positives = 206/385 (53%)
Query: 499 KGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDY 558
K + R +L T R + ++ L P ++ E S ER Y L ++K +
Sbjct: 899 KAILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQF 958
Query: 559 INAGSLMRNYSTVLSILLRLRQICTN--LALCPSDVRSIIPSNTIED--VSNNPD----- 609
+ G ++ NY+ +L +LLRLRQ C + L + +D + +++ + NNPD
Sbjct: 959 VAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQN 1018
Query: 610 -----LLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQHTKPC--CP 662
++++++ L+DG T CAH CR C+L T + C CP
Sbjct: 1019 APSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLL-TSWRSPSCGLCP 1077
Query: 663 LCRHPLLQSDLFSSPPESS-DMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFS 721
+CR L +++L S P +S +D+ K K SSKVS + KS+VFS
Sbjct: 1078 ICRTILKRTELISCPTDSIFRVDVV-KNWKE--SSKVSELLKCLEKIKKSGSGEKSIVFS 1134
Query: 722 QFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAG 781
Q+ L LLE PL+ GF+ LR DG + K R +V++EF T+LL SLKA G G
Sbjct: 1135 QWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQ--KTILLMSLKAGGVG 1192
Query: 782 VNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841
+NLTAAS VFL++PWWNPAVEEQA+ R+HRIGQK V + R IV++++EER+ ++Q RK+
Sbjct: 1193 LNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQ 1252
Query: 842 KLAREAFRRKGKDQREVSTDDLRIL 866
++ A ++ R ++L++L
Sbjct: 1253 RMIAGALT--DEEVRSARLEELKML 1275
Score = 454 (164.9 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 97/271 (35%), Positives = 156/271 (57%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTL--AI 408
TLI+CP ++ S W +LE H+ P + +YYG DRT D + + +D+VLTTY L A
Sbjct: 743 TLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAY 802
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
++ S +I+W+R++LDEAH IK+ Q ++ L++ RW +TGTP+QN DL+
Sbjct: 803 KQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLY 862
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTK---DK-G--LI 522
SL+ FL EP+ ++W LIQ+P G+ +GL ++ ++ + LRRTK DK G ++
Sbjct: 863 SLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLIL 922
Query: 523 GLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQIC 582
L P ++ E S ER Y L ++K ++ G ++ NY+ +L +LLRLRQ C
Sbjct: 923 ELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCC 982
Query: 583 TN--LALCPSDVRSIIPSNTIED--VSNNPD 609
+ L + +D + +++ + NNPD
Sbjct: 983 NHPFLVMSRADSQQYADLDSLARRFLDNNPD 1013
Score = 78 (32.5 bits), Expect = 1.2e-50, Sum P(2) = 1.2e-50
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 218 SEELPPFWE------EKGGG-FVNVLTNYHTDKRP---EPLRGGIFADDMGLGKTLTLLS 267
+E L P WE E+ ++N+ + T + P + RGGI AD MGLGKT+ ++
Sbjct: 640 AETLHPCWEAYRICDERAPSIYLNIFSGEATIQFPTATQMARGGILADAMGLGKTVMTIA 699
Query: 268 LI 269
LI
Sbjct: 700 LI 701
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 299 (110.3 bits), Expect = 2.8e-50, Sum P(5) = 2.8e-50
Identities = 66/160 (41%), Positives = 95/160 (59%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K P K +VFSQF + L+ LQ + LR DG+M+ + VI+EF V
Sbjct: 941 KNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNNVIKEFYQ---SSKNV 997
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
LL SL+A AG+ LT A+ VF+++P+WNP VEEQAM R HRIGQ +V + R+++ ++E
Sbjct: 998 LLLSLRAGNAGLTLTCANHVFIMDPFWNPFVEEQAMGRAHRIGQTREVFVHRVLIAGTVE 1057
Query: 831 ERILELQDRKKKLAREAFRRKG-KDQREVSTDDLRILMSL 869
RI+ELQ+ KK L A +G K +++ +L L L
Sbjct: 1058 NRIMELQESKKHLIESALDERGMKSISQLNRRELGFLFGL 1097
Score = 234 (87.4 bits), Expect = 2.8e-50, Sum P(5) = 2.8e-50
Identities = 63/207 (30%), Positives = 112/207 (54%)
Query: 418 KKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFE 477
++ ++ R+ILDEA IKN A S+ +T L A+ R+ +TGTP+QNG +L+ L+ FL+ +
Sbjct: 569 RESQFHRIILDEAQAIKNKQALASKAMTYLRAQYRFCLTGTPMQNGIEELYPLLRFLKIQ 628
Query: 478 PFSVKSYWQSLIQRPLAQGN--------RKGLSRLQVLMSTISLRRTKDK---G--LIGL 524
P+ + +++ I P+ ++ + ++QVL+ +I LRRTKD G ++ L
Sbjct: 629 PYCSEEKFRADILTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTKDSLIDGVPILNL 688
Query: 525 QPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K + YV L +E Y +E + + + + G +N + L++LLRLRQ C +
Sbjct: 689 PEKHVLSDYVTLENDELAYYQSIESRVQKAAKKIL--GEHTKN-APALTLLLRLRQACCH 745
Query: 585 LALCP-SDVRSIIPSNTIEDVSNNPDL 610
L + R+ + + E ++N L
Sbjct: 746 SYLVEIGEYRAKVKDSEAEASASNSKL 772
Score = 110 (43.8 bits), Expect = 2.8e-50, Sum P(5) = 2.8e-50
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYGD-- 385
DD GK++ L + + K LIV P S+ W+ ++E T + L +Y+GD
Sbjct: 451 DDMGLGKTIQTL--ALMMVSKGSNLIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDK 508
Query: 386 -RTQDVEELKMYDLVLTTYSTLAIEESW 412
+ +D + +K YD+VL +Y+TL ++E W
Sbjct: 509 KKMKDFDLMKEYDIVLVSYTTL-VQE-W 534
Score = 82 (33.9 bits), Expect = 2.1e-47, Sum P(5) = 2.1e-47
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALDKCAG--VAP 279
+GGI ADDMGLGKT+ L+L+ + K + VAP
Sbjct: 445 KGGILADDMGLGKTIQTLALMMVSKGSNLIVAP 477
Score = 64 (27.6 bits), Expect = 2.8e-50, Sum P(5) = 2.8e-50
Identities = 33/117 (28%), Positives = 51/117 (43%)
Query: 108 SKGNRFKI-PCQVHIFTRLE-MFSIVK---DVILEGGLQLISGNDVSFGLSEAMVVKERK 162
SK + K+ CQ I ++E M S K +VI + + + +F EA +V +R+
Sbjct: 330 SKAPKMKLNKCQ-EILIKIETMISSTKRELEVIYQRVRNVGHLANSAFNPYEAQIVADRQ 388
Query: 163 GERGVKSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENSE 219
R +S EI L+D +K L HQ+ GL W+ R E S+
Sbjct: 389 RVRVDES--EIKDLIDNIRPDEDLEEGLEPTPPELKVNLLKHQRMGLTWMKRMEASK 443
Score = 41 (19.5 bits), Expect = 2.8e-50, Sum P(5) = 2.8e-50
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 641 CAHIFCRSC 649
C HI C+ C
Sbjct: 830 CGHIICKGC 838
Score = 41 (19.5 bits), Expect = 1.4e-30, Sum P(5) = 1.4e-30
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 423 WRVILDEAHVIKNANAQQSRT-VTNLNAKRRWVVTGTPIQNGSFD 466
WR +L+ A +K + QQ + + +LN + + TP FD
Sbjct: 774 WRSMLNNARNLKESVKQQVHSLIGSLNGEGN--IENTPACPVCFD 816
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 302 (111.4 bits), Expect = 3.5e-50, Sum P(5) = 3.5e-50
Identities = 84/254 (33%), Positives = 128/254 (50%)
Query: 377 LKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNA 436
+KT + G++ D + +D T +T+ E P+ I W R+I+DEAHVIKN
Sbjct: 842 MKTVLNSGNKNND--NIFFFDKKKT--NTMLYNMK--EYPLYNITWRRIIIDEAHVIKNK 895
Query: 437 NAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQG 496
N+ QS V L +R W +TGTPIQN FD+F L FL +P+ +W I + +
Sbjct: 896 NSIQSVAVWKLRGERNWCLTGTPIQNSIFDIFPLFRFLGIKPYGTIEWWNKEIVDYVNKN 955
Query: 497 NRK-GLSRLQVLMSTISLRRTKDK------GLIGLQPKTIEKYYVELSLEERKLYDELEG 549
L ++ + S I LRRTK +I L K I +E SLEE Y +
Sbjct: 956 KLNLALDVVRKISSPILLRRTKKSKTKNGNSIISLPKKNIHLEKLEFSLEEEDFYRAIFY 1015
Query: 550 KAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPD 609
++K Y++ G+++ +YS VL +LLRLRQ C++ L S + +D++ D
Sbjct: 1016 RSKTKFDTYMHDGNVLSHYSHVLQLLLRLRQCCSHPLLLFS--KPFFEEWNKDDMN---D 1070
Query: 610 LLKKLVEVLQDGED 623
LK + +G+D
Sbjct: 1071 ALKNKTDKEDNGDD 1084
Score = 232 (86.7 bits), Expect = 3.5e-50, Sum P(5) = 3.5e-50
Identities = 40/83 (48%), Positives = 62/83 (74%)
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
VLL SLKA G G+NLT +S+V+L++ WWNPA+E+QA +RVHRIGQ ++V I + ++ ++
Sbjct: 1334 VLLCSLKAGGVGLNLTVSSKVYLMDLWWNPAIEDQAFERVHRIGQLKEVNIYKFVLEKTV 1393
Query: 830 EERILELQDRKKKLAREAFRRKG 852
EERIL++ K+ A + ++G
Sbjct: 1394 EERILQIHQSKQYTANQILTQEG 1416
Score = 127 (49.8 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDV--EELKMYDLVLTTYSTLAIE 409
TL++ P ++ W ++E HT G + Y+YYG ++D+ EEL Y +VLTTYSTL E
Sbjct: 739 TLVIAPLALIYQWKEEIERHTKEGFVTCYIYYGT-SKDISSEELSGYSVVLTTYSTLVSE 797
Score = 90 (36.7 bits), Expect = 3.5e-50, Sum P(5) = 3.5e-50
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 232 FVNVLTNYHTDKRPE---PLRGGIFADDMGLGKTLTLLSLIALD 272
+VN LT + P+ P RGGI AD+MGLGKT+ + LI D
Sbjct: 659 YVNKLTGAFSLTYPQFVPPFRGGILADEMGLGKTIQSIGLITHD 702
Score = 82 (33.9 bits), Expect = 3.5e-50, Sum P(5) = 3.5e-50
Identities = 37/160 (23%), Positives = 57/160 (35%)
Query: 606 NNPDLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCI---LKTLQHTKPCCP 662
N D K +E+L++G + C HI C+ C Q CP
Sbjct: 1146 NIDDDYSKELEILKNGNVMQCCICLEDATYPLISKCLHIMCKKCADDYFHLTQIADKKCP 1205
Query: 663 LCRHPLLQSDLFSSPPESSDMDIAGKTLK--NFTSSKVSAXXXXXXXXRDKKPTTKSVVF 720
C + + L + S +D K +K NF S D + VVF
Sbjct: 1206 QCDNYISLKSLKTLQENKSPLDELLKKMKKDNFVYS-TKLKKLFEHVQNDMQNELHIVVF 1264
Query: 721 SQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
SQ+ L ++E+ L DGS+ ++R + F
Sbjct: 1265 SQWIGFLKIIEKLLNLYNIANKIYDGSLTFEQRKATLNWF 1304
Score = 49 (22.3 bits), Expect = 3.5e-50, Sum P(5) = 3.5e-50
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 198 KSELFVHQKEGLGWLVRRENSEE 220
K L +Q EG+ W+ REN E
Sbjct: 458 KPMLKTYQAEGVWWMYTRENPPE 480
Score = 46 (21.3 bits), Expect = 5.0e-45, Sum P(4) = 5.0e-45
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 217 NSEELPPFWEEKGGGFVNVLTNYHTDK 243
N E L P WEE F+ + Y DK
Sbjct: 626 NREPLNPLWEEHA--FIPNIKIYEKDK 650
Score = 43 (20.2 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ 388
D+ + KS+ L ++ S + + + + V+ST + +L EH V ++ ++ +Q
Sbjct: 1208 DNYISLKSLKTLQENKSPLDELLKKMKKDNFVYSTKLKKLFEH-VQNDMQNELHIVVFSQ 1266
Query: 389 DVEELKMYDLVLTTYS 404
+ LK+ + +L Y+
Sbjct: 1267 WIGFLKIIEKLLNLYN 1282
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 285 (105.4 bits), Expect = 3.3e-49, Sum P(5) = 3.3e-49
Identities = 63/179 (35%), Positives = 106/179 (59%)
Query: 692 NFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAK 751
+F S K++ +KK K V+ SQ+ +L L+E+ +QA G + G + K
Sbjct: 819 DFISCKMAKTLEVVREILEKKE--KVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVK 876
Query: 752 KRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHR 811
R + ++ F N GG V+L SL A G G+NL + + +++ WNPA+E+QA DR++R
Sbjct: 877 DRQERVDSF-NQEKGGAQVMLLSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYR 935
Query: 812 IGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKG-KDQREVSTDDLRILMSL 869
+GQK++V I RLIV+ +IE+R+++LQ++K LA + +++T D+R+L L
Sbjct: 936 MGQKKEVFIHRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKLNKLTTADIRMLFGL 994
Score = 229 (85.7 bits), Expect = 3.3e-49, Sum P(5) = 3.3e-49
Identities = 55/165 (33%), Positives = 90/165 (54%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAF 473
+SP+ ++ W RVILDEAH IKN +Q S+ V L++ RW ++GTPI N +DL+SL+ F
Sbjct: 542 DSPLARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRF 601
Query: 474 LQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD-------KGLIGLQP 526
L+ F + +W I P+ G R+ +L + LRRTKD K ++ L+
Sbjct: 602 LRIPLFGDRKFWAESIM-PMKTGMA---DRVNLLTKNLMLRRTKDQQCALTNKKIVNLKE 657
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
K IE + +E+ +E Y + A+ +V+ + ++ Y +
Sbjct: 658 KKIEIHELEMVGDEANGYAIMMEAAQKLVKQIVTNTDDIQKYGQI 702
Score = 110 (43.8 bits), Expect = 3.3e-49, Sum P(5) = 3.3e-49
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 319 KKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLK 378
K + + DN K + K TLI+ P S+ W ++ +L
Sbjct: 416 KAARRARKESGDNAADKEKRRVAKEEGLYPSNGTLIIAPASLIHQWEAEINRRLESDLLS 475
Query: 379 TYMYYGDRTQ-DVE--ELKMYDLVLTTYSTLAIEE 410
+M++G + Q +E EL YD+V+TTY TLA E
Sbjct: 476 VFMFHGTKKQRQIEPKELARYDVVITTY-TLAANE 509
Score = 107 (42.7 bits), Expect = 6.7e-49, Sum P(5) = 6.7e-49
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 246 EPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLD 288
+P GGI ADDMGLGKTL++LSLI K A A +G N+ D
Sbjct: 389 QPHSGGILADDMGLGKTLSMLSLIVHQKAARRARKESGDNAAD 431
Score = 58 (25.5 bits), Expect = 3.3e-49, Sum P(5) = 3.3e-49
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 200 ELFVHQKEGLGWLVRRE 216
EL HQK GL WLV RE
Sbjct: 371 ELMPHQKAGLRWLVWRE 387
Score = 54 (24.1 bits), Expect = 3.3e-49, Sum P(5) = 3.3e-49
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 561 AG-SLMRNYSTVLSILLRLRQICTNLALCPS 590
AG S +N S +L +L+RLRQ C + + S
Sbjct: 726 AGNSNFQNMSCILLLLMRLRQACVHFHITKS 756
Score = 43 (20.2 bits), Expect = 6.3e-30, Sum P(5) = 6.3e-30
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 487 SLIQRPLAQGNRKGLSRLQV-LMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYD 545
SLI + A+ NR RL+ L+S TK + I +PK + +Y V ++ +
Sbjct: 456 SLIHQWEAEINR----RLESDLLSVFMFHGTKKQRQI--EPKELARYDVVITTYTLAANE 509
Query: 546 ELEGKAKG 553
+E KA G
Sbjct: 510 LMEKKAAG 517
Score = 37 (18.1 bits), Expect = 6.5e-22, Sum P(4) = 6.5e-22
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 820 IVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILM 867
I+ L++R + + + K + +AF+ G D + +L LM
Sbjct: 737 ILLLLMR--LRQACVHFHITKSGMDLDAFKINGGDDEDADMKELENLM 782
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 277 (102.6 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 58/151 (38%), Positives = 90/151 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQ+ ML L+E L+ +L G M+ R ++ F VLL SL
Sbjct: 1496 KCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQ--LRVLLISL 1553
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+++PWWNPA E QA+ R HRIGQ + V +R I+ N++EE+I++
Sbjct: 1554 KAGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQ 1613
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
LQ++K+ + G +++S +DL L
Sbjct: 1614 LQNKKQLVFDSTIGDSGNAMQKLSKEDLAFL 1644
Score = 163 (62.4 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNA-KRRWVVTGTPIQNGSFDLFSLMA 472
ES + +I W R+ILDEAH IKN N ++++ NL RW +TGTP+QN +L+SL+
Sbjct: 1027 ESALHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLTGTPLQNRISELYSLIR 1086
Query: 473 FLQFEPFS 480
F++F P++
Sbjct: 1087 FIEFYPYA 1094
Score = 118 (46.6 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 483 SYWQSLIQRPLAQ-GNR-KGLSRLQVL----MSTISLRRTKD--KGLIGLQPKTIEKYYV 534
+Y+ I +P+ G R +GLS + L + I LRRTK K I L+P I+
Sbjct: 1130 NYFNKRILKPIQSFGYRGEGLSGMSYLKNEVLDKILLRRTKGERKSDINLKPLIIKIRKD 1189
Query: 535 ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQ 580
+LS EE+ Y+ L + Y+N+ +++ NY+ + +L RLRQ
Sbjct: 1190 KLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIFDLLSRLRQ 1235
Score = 104 (41.7 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 320 KHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKI--TLIVCPPSVFSTWITQLEEHTVPGML 377
K + VN K N + K + F+ K TLI+ P + W +++E+ +L
Sbjct: 409 KKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQTLIIAPVAAVMQWKSEIEKFVDENIL 468
Query: 378 KTYMYYGD-RTQDVEELKMYDLVLTTYSTLAI 408
Y+Y+G+ + EEL YD+V+T+Y+ + +
Sbjct: 469 NVYVYHGNSKIISDEELIKYDIVITSYAVVEV 500
Score = 74 (31.1 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 248 LRGGIFADDMGLGKTLTLLSLIALDK 273
++GGI AD+MG+GKT+ ++LI K
Sbjct: 245 VKGGILADEMGMGKTIQAITLILCQK 270
Score = 55 (24.4 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 197 IKSELFVHQKEGLGWLVRRENS 218
+K +L +QKEG+ W++ +E S
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMS 243
Score = 42 (19.8 bits), Expect = 7.3e-29, Sum P(5) = 7.3e-29
Identities = 29/146 (19%), Positives = 65/146 (44%)
Query: 404 STLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQS-RTVTNLNAKRRW-VVTGTPIQ 461
S L ++ +E ++ + +KN N+ ++ ++V N + +W VV ++
Sbjct: 663 SNLGFDKETMEQVIESLSEGGKKKKNVKNVKNVNSVKNVKSVKN-HRDVKWNVVIKNMLE 721
Query: 462 NGSFDLFSLMAFLQFEPFSVKSY-WQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
N F L+++ + + +K Y + IQ + + + L+V++ T+ K
Sbjct: 722 N--F-LYNVDMNDKCKHVLIKIYVTNTTIQN--TELEKLNMGELKVVLITMG------KH 770
Query: 521 LIGLQPKTIEKYYVELSLEERKLYDE 546
+ G + + I + V ++LYDE
Sbjct: 771 IFGTKVELINRILVSAKYIRKELYDE 796
Score = 39 (18.8 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 536 LSLEERKLYDELEGKAKGVVQDYINAGSLM--RNYSTVLSILLRLRQICTNLALCPSD 591
LS EER E K + + Y N+ S++ +N ST + ++ C+ + L SD
Sbjct: 320 LSFEERDTKHEKSIKEIDIKKSYKNSSSILYCKN-STSDDLKVKEESDCS-VILIESD 375
Score = 37 (18.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 532 YYVELSLEERKLYDELEGKAKGVVQ--DYINAGSLMRNYSTVL 572
Y ++ L+ R ++ L + + DY+N + NY+ ++
Sbjct: 176 YEIKNDLKCRNSFEMLINEENEKINSLDYLNVEKKITNYNLII 218
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 277 (102.6 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 58/151 (38%), Positives = 90/151 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQ+ ML L+E L+ +L G M+ R ++ F VLL SL
Sbjct: 1496 KCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQ--LRVLLISL 1553
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+++PWWNPA E QA+ R HRIGQ + V +R I+ N++EE+I++
Sbjct: 1554 KAGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQ 1613
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
LQ++K+ + G +++S +DL L
Sbjct: 1614 LQNKKQLVFDSTIGDSGNAMQKLSKEDLAFL 1644
Score = 163 (62.4 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNA-KRRWVVTGTPIQNGSFDLFSLMA 472
ES + +I W R+ILDEAH IKN N ++++ NL RW +TGTP+QN +L+SL+
Sbjct: 1027 ESALHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLTGTPLQNRISELYSLIR 1086
Query: 473 FLQFEPFS 480
F++F P++
Sbjct: 1087 FIEFYPYA 1094
Score = 118 (46.6 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 483 SYWQSLIQRPLAQ-GNR-KGLSRLQVL----MSTISLRRTKD--KGLIGLQPKTIEKYYV 534
+Y+ I +P+ G R +GLS + L + I LRRTK K I L+P I+
Sbjct: 1130 NYFNKRILKPIQSFGYRGEGLSGMSYLKNEVLDKILLRRTKGERKSDINLKPLIIKIRKD 1189
Query: 535 ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQ 580
+LS EE+ Y+ L + Y+N+ +++ NY+ + +L RLRQ
Sbjct: 1190 KLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIFDLLSRLRQ 1235
Score = 104 (41.7 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 320 KHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKI--TLIVCPPSVFSTWITQLEEHTVPGML 377
K + VN K N + K + F+ K TLI+ P + W +++E+ +L
Sbjct: 409 KKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQTLIIAPVAAVMQWKSEIEKFVDENIL 468
Query: 378 KTYMYYGD-RTQDVEELKMYDLVLTTYSTLAI 408
Y+Y+G+ + EEL YD+V+T+Y+ + +
Sbjct: 469 NVYVYHGNSKIISDEELIKYDIVITSYAVVEV 500
Score = 74 (31.1 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 248 LRGGIFADDMGLGKTLTLLSLIALDK 273
++GGI AD+MG+GKT+ ++LI K
Sbjct: 245 VKGGILADEMGMGKTIQAITLILCQK 270
Score = 55 (24.4 bits), Expect = 5.3e-49, Sum P(6) = 5.3e-49
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 197 IKSELFVHQKEGLGWLVRRENS 218
+K +L +QKEG+ W++ +E S
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMS 243
Score = 42 (19.8 bits), Expect = 7.3e-29, Sum P(5) = 7.3e-29
Identities = 29/146 (19%), Positives = 65/146 (44%)
Query: 404 STLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQS-RTVTNLNAKRRW-VVTGTPIQ 461
S L ++ +E ++ + +KN N+ ++ ++V N + +W VV ++
Sbjct: 663 SNLGFDKETMEQVIESLSEGGKKKKNVKNVKNVNSVKNVKSVKN-HRDVKWNVVIKNMLE 721
Query: 462 NGSFDLFSLMAFLQFEPFSVKSY-WQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
N F L+++ + + +K Y + IQ + + + L+V++ T+ K
Sbjct: 722 N--F-LYNVDMNDKCKHVLIKIYVTNTTIQN--TELEKLNMGELKVVLITMG------KH 770
Query: 521 LIGLQPKTIEKYYVELSLEERKLYDE 546
+ G + + I + V ++LYDE
Sbjct: 771 IFGTKVELINRILVSAKYIRKELYDE 796
Score = 39 (18.8 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 536 LSLEERKLYDELEGKAKGVVQDYINAGSLM--RNYSTVLSILLRLRQICTNLALCPSD 591
LS EER E K + + Y N+ S++ +N ST + ++ C+ + L SD
Sbjct: 320 LSFEERDTKHEKSIKEIDIKKSYKNSSSILYCKN-STSDDLKVKEESDCS-VILIESD 375
Score = 37 (18.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 532 YYVELSLEERKLYDELEGKAKGVVQ--DYINAGSLMRNYSTVL 572
Y ++ L+ R ++ L + + DY+N + NY+ ++
Sbjct: 176 YEIKNDLKCRNSFEMLINEENEKINSLDYLNVEKKITNYNLII 218
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 253 (94.1 bits), Expect = 1.7e-47, Sum P(5) = 1.7e-47
Identities = 56/137 (40%), Positives = 81/137 (59%)
Query: 712 KPTTKSVVFSQFRKMLILLEEPLQAAGF----KLLRLDGSMNAKKRAQVIEEF---GNPG 764
K K +VFS + L L+EE L A + R+DG + KR +I+ F N G
Sbjct: 1331 KNQLKGIVFSHWTMFLDLIEESLIANDWIKDVDFCRIDGKLPISKREAIIDSFQAKSNNG 1390
Query: 765 PGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLI 824
GGP ++L S+ G G+NL A+ V+L+EP W P++EEQA+ RV RIGQ D+ + R I
Sbjct: 1391 NGGPRLMLMSITCGGIGLNLERANIVYLMEPSWTPSIEEQAIGRVDRIGQTRDIFVKRFI 1450
Query: 825 VRNSIEERILELQDRKK 841
++ +IE +L+L D KK
Sbjct: 1451 IKKTIEVGMLKLHDAKK 1467
Score = 215 (80.7 bits), Expect = 1.7e-47, Sum P(5) = 1.7e-47
Identities = 52/175 (29%), Positives = 94/175 (53%)
Query: 416 PVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQ 475
P+ I WWRVI+DE+H K+ + R++ NL++ RW +TGTP QN DLF ++ FL
Sbjct: 843 PLLCIHWWRVIIDESHKFKHKSLF-FRSLQNLDSVNRWCLTGTPYQNNCTDLFPMLYFLN 901
Query: 476 FEPFSVK-SYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYV 534
P + + W+ L++ Q +K + L+ ++ I L R+K + +Q + + +
Sbjct: 902 VFPIAKNIATWRKLVESIQDQSEKKKI--LKKYLNPIILSRSKKD--VRIQQNQVYEEII 957
Query: 535 ELSLEERK--LYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
EL ++ + Y + + + + G L +Y+ VL ++LRLR+ C + +L
Sbjct: 958 ELEFDQNESDAYSLVFKDSNETFERIQDRGDLNHHYNLVLHLILRLRRCCDHSSL 1012
Score = 119 (46.9 bits), Expect = 1.7e-47, Sum P(5) = 1.7e-47
Identities = 46/160 (28%), Positives = 67/160 (41%)
Query: 125 LEMFSIVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVXXX 184
L + I+KD +G LQ+ D++FG + + +E + D +
Sbjct: 499 LALGRILKDFQRKGSLQIKGSGDINFGFASINNNESLDSNNNNNEDNESYIRNDCD-NLV 557
Query: 185 XXXXXXXXXXXVIKSELFVHQKEGLGWLVRRE------NSEELPPFWE---EKGGGFVNV 235
++S+L HQKEG+ W+ +RE N + L W K G V
Sbjct: 558 RKKLDKIEQPEWLRSKLLEHQKEGIWWMRKRELEPFITNGQTLSEHWSIYLSKSSG-VTF 616
Query: 236 LTNYHTDKRP--EP-----LRGGIFADDMGLGKTLTLLSL 268
N DK EP + GG+ D MGLGKTL +LSL
Sbjct: 617 YYNSFCDKITMFEPKGRKSISGGMLCDKMGLGKTLMILSL 656
Score = 105 (42.0 bits), Expect = 1.7e-47, Sum P(5) = 1.7e-47
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTY---MYYGDRTQDV--EELKMYDLVLTTYS 404
K TL++ P SV W QLE H P LK +Y+G + + ++L D V TT+
Sbjct: 713 KSTLVILPFSVLKQWRNQLELHLQPDFLKKLNIIIYHGTNRKSITQDQLIKADFVFTTHQ 772
Query: 405 TLAIEESWLESPVK 418
T +IE S+ E K
Sbjct: 773 TFSIEYSFYEKERK 786
Score = 43 (20.2 bits), Expect = 1.7e-47, Sum P(5) = 1.7e-47
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 641 CAHIFCRSCILKTL 654
C H++C++C + L
Sbjct: 1047 CDHLYCKACYIYLL 1060
Score = 37 (18.1 bits), Expect = 6.1e-23, Sum P(4) = 6.1e-23
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 583 TNLALCPSDVRSIIPSNTIEDVSNN------PDLLKKLVEVLQDG 621
T + L P I+P + ++ N PD LKKL ++ G
Sbjct: 707 TKITL-PKSTLVILPFSVLKQWRNQLELHLQPDFLKKLNIIIYHG 750
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 283 (104.7 bits), Expect = 2.9e-45, Sum P(5) = 2.9e-45
Identities = 65/162 (40%), Positives = 98/162 (60%)
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQ-AAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
D+ T K ++FSQF +LE L+ F L+ GSMNA++R+ VI EF P
Sbjct: 1457 DESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRD-PE-K 1514
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+LL S+KA +G+ LT A+ V +++P+WNP VEEQA DR +RI Q + V++ +L +++S
Sbjct: 1515 RILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDS 1574
Query: 829 IEERILELQDRKKKLAREAFRR-KGKDQREVSTDDLRILMSL 869
+E+RI ELQ RKK++ A K K+ + +L L L
Sbjct: 1575 VEDRISELQKRKKEMVDSAMDPGKIKEVNSLGRRELGFLFGL 1616
Score = 254 (94.5 bits), Expect = 2.9e-45, Sum P(5) = 2.9e-45
Identities = 67/180 (37%), Positives = 102/180 (56%)
Query: 422 WWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPF-- 479
++R++LDE IKN N + S+ +N RWV++GTPIQN +L+SL+ FL+ P+
Sbjct: 1102 FYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHK 1161
Query: 480 ------SVKSYWQSLIQRPLAQGNRKG-LSRLQVLMSTISLRRTK-DK--G--LIGLQPK 527
+ ++Q Q +RK L +++VL++ I LRR+K DK G L+ L PK
Sbjct: 1162 EQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPK 1221
Query: 528 TIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
+E L EE K Y LE K + + + +N S +YS+VL++LLRLRQ C + L
Sbjct: 1222 IVEVDESRLKGEELKFYTALESKNQALAKKLLN-NSTRGSYSSVLTLLLRLRQACCHSEL 1280
Score = 82 (33.9 bits), Expect = 2.9e-45, Sum P(5) = 2.9e-45
Identities = 30/89 (33%), Positives = 39/89 (43%)
Query: 329 DDNVKGKSVG----MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVP-GMLKTYMYY 383
DD GK++ ML S K LIV P SV W +LE T+++
Sbjct: 969 DDMGLGKTIQAIALMLANRSEESKCKTNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFG 1028
Query: 384 GDRTQDVE---ELKMYDLVLTTYSTLAIE 409
G V+ +L YD VL +Y TLA E
Sbjct: 1029 GSGNGKVKHWRDLARYDAVLVSYQTLANE 1057
Score = 72 (30.4 bits), Expect = 3.1e-44, Sum P(5) = 3.1e-44
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALDK 273
+GG+ ADDMGLGKT+ ++L+ ++
Sbjct: 963 KGGLLADDMGLGKTIQAIALMLANR 987
Score = 51 (23.0 bits), Expect = 2.9e-45, Sum P(5) = 2.9e-45
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 201 LFVHQKEGLGWLVRRENS 218
L HQ+ GL WL++ ENS
Sbjct: 943 LLKHQRLGLHWLLQVENS 960
Score = 42 (19.8 bits), Expect = 2.9e-45, Sum P(5) = 2.9e-45
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 639 TCCAHIFCRSCI 650
T C H+ C +CI
Sbjct: 1346 TGCGHLICDTCI 1357
Score = 41 (19.5 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 88 LAPLIDSGMILVEGIVPNTRSKGNRFKIPCQ 118
+ P I+ +L + ++KG F IPC+
Sbjct: 1357 IEPFIEESSMLPQA----KKTKGGAFAIPCK 1383
Score = 40 (19.1 bits), Expect = 1.5e-39, Sum P(5) = 1.5e-39
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 364 WITQLEEHTVPG-MLKTYMYYGDRTQDV--------EELKMY-DLVLTTYSTLAIEESWL 413
W+ Q+E G +L M G Q + EE K +L++ S L + + L
Sbjct: 953 WLLQVENSAKKGGLLADDMGLGKTIQAIALMLANRSEESKCKTNLIVAPVSVLRVWKGEL 1012
Query: 414 ESPVKK 419
E+ VKK
Sbjct: 1013 ETKVKK 1018
Score = 40 (19.1 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 662 PLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSK 697
P+ R PL + DLF +++ D+ K +K
Sbjct: 667 PIVRQPLAKRDLFIKSIDTAK-DLLAKNTSRTEMTK 701
Score = 37 (18.1 bits), Expect = 7.9e-44, Sum P(5) = 7.9e-44
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 261 KTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVE 293
+ ++LL L +D V +G+NS+ +E +
Sbjct: 408 EVISLLDLPNIDLNNSVIKEASGSNSIPTSETD 440
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 269 (99.8 bits), Expect = 8.0e-43, Sum P(3) = 8.0e-43
Identities = 73/208 (35%), Positives = 118/208 (56%)
Query: 663 LCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQ 722
+C HP L L + P+ DI +++K T ++ +D+ + ++F+Q
Sbjct: 729 ICNHPALY--LKETEPK----DIIERSMKTSTLMEL------IENIKDQNESC--LIFTQ 774
Query: 723 FRKMLILLEEPLQAA-GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAG 781
+ M +L+ L+ G ++L L+GS+ K+R ++IE+F N G + + SLKA G G
Sbjct: 775 YIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQN---GTYDIFILSLKAGGTG 831
Query: 782 VNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841
+NLTAA+ V + WWNPAVE QA DR +RIGQK V + +LI ++EE+I E+ +RK+
Sbjct: 832 LNLTAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQ 891
Query: 842 KLAREAFRRKGKDQREVSTDDLRILMSL 869
L A E+STD+L+ L+ +
Sbjct: 892 SL-NNAVITSDSWMTELSTDELKELLGV 918
Score = 265 (98.3 bits), Expect = 8.0e-43, Sum P(3) = 8.0e-43
Identities = 83/275 (30%), Positives = 137/275 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMY----DLVLTTYSTLAI 408
LIV P SV W + E P L+ ++YG E K + D+VLT+Y+ +
Sbjct: 504 LIVAPTSVLGNWQKEFERFA-PN-LRVQLHYGSNRAKGESFKDFLQSADVVLTSYALAQL 561
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+E L + + W VILDEA IKN + +QS+ V NL A + +TGTP++N +L+
Sbjct: 562 DEEELST----LCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELW 617
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKG-LSRLQVLMSTISLRRTK-DKGL-IGLQ 525
S+ F+ +Q P+ + +G + ++Q +S LRRTK D+ + + L
Sbjct: 618 SIFDFINHGYLGSLGQFQRRFVSPIEKDRDEGKIQQVQRFISPFLLRRTKKDQTVALNLP 677
Query: 526 PKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNL 585
K +K Y L+ E+ LY++L + +Q+ + R +L +L +L+QIC +
Sbjct: 678 DKQEQKAYCPLTGEQASLYEQL---VQDTLQNVEGLSGIERR-GFILLMLNKLKQICNHP 733
Query: 586 ALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQD 620
AL + P + IE S L +L+E ++D
Sbjct: 734 ALYLKETE---PKDIIER-SMKTSTLMELIENIKD 764
Score = 55 (24.4 bits), Expect = 8.0e-43, Sum P(3) = 8.0e-43
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G + ADDMGLGK++ ++ +
Sbjct: 471 GALLADDMGLGKSIQTITYL 490
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 280 (103.6 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
Identities = 69/204 (33%), Positives = 109/204 (53%)
Query: 672 DLFSSPPESSD----MDIAGKTL-KNFT-SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRK 725
DL P+SSD ++I +T K T S+K +A K P K ++F+ +
Sbjct: 1030 DLLGVQPKSSDVAKFLEICDRTPDKPVTPSAKTTAIKMQVLEWLHKYPDDKIIIFTHWVP 1089
Query: 726 MLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNP-GPGGPTVLLASLKASGAGVNL 784
+ +L +A + L GSM +R +E+F GP P +L+AS + G +NL
Sbjct: 1090 LARILGRVFEAEKIRFLYYFGSMGMGQRKTAVEKFTTIIGPLAPKLLIASSRCGGQALNL 1149
Query: 785 TAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLA 844
TAA+RV L++ WWN AVE QA RVHRIGQ +D V+++ R +I+ER+L++QD K
Sbjct: 1150 TAANRVILVDLWWNTAVERQAFGRVHRIGQTKDTYYVKIVTRKTIDERLLDMQDEKDAKI 1209
Query: 845 REAFRRKGKDQREVSTDDLRILMS 868
+ + ++ D+R L++
Sbjct: 1210 SNTLQDGEHKVKPLTHADIRYLIA 1233
Score = 218 (81.8 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
Identities = 61/188 (32%), Positives = 97/188 (51%)
Query: 410 ESWLESPVKK------IEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNG 463
E+W E +K ++W RV+LDEAH IKN ++ S+ +L +K RW ++GTPI N
Sbjct: 649 EAWREQLTEKMGDAFLVDWHRVVLDEAHAIKNHLSRTSKACVHLRSKHRWALSGTPIHNT 708
Query: 464 SFDLFSLMAFLQFE-PFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLI 522
+L+ M FL+ E +K + + P N SRL ++ ++ +RR +
Sbjct: 709 IEELYPYMRFLRVEWAADMKDFKKKFGGTP--GDNDSENSRLAAVVPSLMIRRRVHDTFM 766
Query: 523 G---LQ-PKT--IEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
G L+ P T ++ VELS EE+ +Y LE + + + +I G + T + L
Sbjct: 767 GQPILRIPPTHPVKTISVELSTEEKLIYHRLEDRFRDNLNSHIKEGVSSKKLRTYFTYLT 826
Query: 577 RLRQICTN 584
RLRQ CT+
Sbjct: 827 RLRQ-CTS 833
Score = 90 (36.7 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 334 GKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDV--E 391
GK+V ML + G+ TLIV P + W ++L++H K +Y D+ ++ E
Sbjct: 556 GKTVQMLACMAQNQGEGPTLIVAPAAAIEQWKSELKKHCT--FAKRIWHYSDKNENQIPE 613
Query: 392 ELKMYDLVLTTYSTLA 407
LK +V+ +Y +A
Sbjct: 614 VLKKEKVVIASYQAIA 629
Score = 70 (29.7 bits), Expect = 1.4e-40, Sum P(5) = 1.4e-40
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAG 276
GGI AD MGLGKT+ +L+ +A ++ G
Sbjct: 546 GGILADQMGLGKTVQMLACMAQNQGEG 572
Score = 56 (24.8 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 641 CAHIFCRSCILKTLQHTK-----PCCPLC 664
C H FCR CI + + + P CP C
Sbjct: 945 CGHTFCRDCIEPIVHNAEASNQEPKCPHC 973
Score = 39 (18.8 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPF 224
+K+ LF HQ G+ +++ +E S L P+
Sbjct: 519 MKTPLFNHQLVGVHFMLGKEFSP-LGPY 545
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 287 (106.1 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 65/148 (43%), Positives = 85/148 (57%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQF MLIL+EE LQ+ +L G + R I++F G V L SL
Sbjct: 949 KILIFSQFTSMLILIEELLQSLEIDYSKLTGQ--TRLRQVQIDKFQE---GDTPVFLISL 1003
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NLTAA V +PWWNPA E QA DR HRIGQ+ V + +LI ++EE+I E
Sbjct: 1004 KAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQE 1063
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDL 863
+Q K+ LA KG + S D+L
Sbjct: 1064 MQQHKQGLADSILEGKGNGAWQGSADEL 1091
Score = 230 (86.0 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 73/275 (26%), Positives = 134/275 (48%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEES 411
+LI+CP S+ W + + P + ++ R + L +D+V+TTY + +
Sbjct: 687 SLIICPTSLVGNWAKEAAKFA-PSLTLAVIHGAQRGPLLARLSEFDVVVTTYPLMVRDND 745
Query: 412 WLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLM 471
+ ++ + E ++LDEA IKNA A+ S+ + L + + +TGTP++N +L SLM
Sbjct: 746 YYQA--QAFE--HIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLM 801
Query: 472 AFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIE 530
F +Y+ + + + G+ + + L ++ LRRTK + + L PKT E
Sbjct: 802 DFCLPGLLGTTAYFNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAEVVTELPPKT-E 860
Query: 531 KYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCP 589
Y +EL ++R LY+ + + +++ + ++ L LL+LRQ C C
Sbjct: 861 IYQSLELEKDQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQAC-----C- 914
Query: 590 SDVRSIIPSNTIEDVSNNPDL---LKKLVEVLQDG 621
D R ++ + V NN L + L E++Q+G
Sbjct: 915 -DPR-LVKLEQAQKVKNNAKLNWLSQNLPEMVQEG 947
Score = 73 (30.8 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GGI ADDMGLGKT+ L+ + K A G
Sbjct: 652 GGILADDMGLGKTIQTLAFLLKQKQLKSAAG 682
Score = 43 (20.2 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
+++EL +Q++GL WL
Sbjct: 628 LQAELRPYQQQGLNWL 643
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 287 (106.1 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 65/148 (43%), Positives = 85/148 (57%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQF MLIL+EE LQ+ +L G + R I++F G V L SL
Sbjct: 949 KILIFSQFTSMLILIEELLQSLEIDYSKLTGQ--TRLRQVQIDKFQE---GDTPVFLISL 1003
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NLTAA V +PWWNPA E QA DR HRIGQ+ V + +LI ++EE+I E
Sbjct: 1004 KAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQE 1063
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDL 863
+Q K+ LA KG + S D+L
Sbjct: 1064 MQQHKQGLADSILEGKGNGAWQGSADEL 1091
Score = 230 (86.0 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 73/275 (26%), Positives = 134/275 (48%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEES 411
+LI+CP S+ W + + P + ++ R + L +D+V+TTY + +
Sbjct: 687 SLIICPTSLVGNWAKEAAKFA-PSLTLAVIHGAQRGPLLARLSEFDVVVTTYPLMVRDND 745
Query: 412 WLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLM 471
+ ++ + E ++LDEA IKNA A+ S+ + L + + +TGTP++N +L SLM
Sbjct: 746 YYQA--QAFE--HIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLM 801
Query: 472 AFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIE 530
F +Y+ + + + G+ + + L ++ LRRTK + + L PKT E
Sbjct: 802 DFCLPGLLGTTAYFNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKAEVVTELPPKT-E 860
Query: 531 KYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCP 589
Y +EL ++R LY+ + + +++ + ++ L LL+LRQ C C
Sbjct: 861 IYQSLELEKDQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQAC-----C- 914
Query: 590 SDVRSIIPSNTIEDVSNNPDL---LKKLVEVLQDG 621
D R ++ + V NN L + L E++Q+G
Sbjct: 915 -DPR-LVKLEQAQKVKNNAKLNWLSQNLPEMVQEG 947
Score = 73 (30.8 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GGI ADDMGLGKT+ L+ + K A G
Sbjct: 652 GGILADDMGLGKTIQTLAFLLKQKQLKSAAG 682
Score = 43 (20.2 bits), Expect = 1.4e-42, Sum P(4) = 1.4e-42
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
+++EL +Q++GL WL
Sbjct: 628 LQAELRPYQQQGLNWL 643
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 287 (106.1 bits), Expect = 2.3e-42, Sum P(3) = 2.3e-42
Identities = 68/194 (35%), Positives = 104/194 (53%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++D I G + K K+ A R
Sbjct: 453 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDEHIVGNSGKMVALDKLLA--------R 501
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ G++ RLDG ++R + I+ F P
Sbjct: 502 IKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPN-SSKF 560
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ + S +A G G+NL +A V L + WNP V+ QAMDR HRIGQK+ V++ RLI N++
Sbjct: 561 IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTV 620
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 621 EERIVERAEIKLRL 634
Score = 233 (87.1 bits), Expect = 2.3e-42, Sum P(3) = 2.3e-42
Identities = 72/254 (28%), Positives = 126/254 (49%)
Query: 337 VGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEEL 393
+G L + G + L+ P S W+ + + VP L+ + GD R + +
Sbjct: 226 LGYLKHYRNIPGPHMVLV--PKSTLHNWMNEFKRW-VPS-LRVICFVGDKDVRAAFIRDE 281
Query: 394 KM---YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
M +D+ +T+Y + I+E +S KK W +++DEAH IKN ++ S V +
Sbjct: 282 MMPGEWDVCVTSYE-MVIKE---KSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 337
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMST 510
R ++TGTP+QN +L++L+ FL + F+ + S G++K + RL ++
Sbjct: 338 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKP 397
Query: 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST 570
LRR K L PK K Y+ LS +R+ Y ++ K + D +N+ M +
Sbjct: 398 FLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKI--LMKDI--DVLNSSGKM-DKMR 452
Query: 571 VLSILLRLRQICTN 584
+L+IL++LR+ C +
Sbjct: 453 LLNILMQLRKCCNH 466
Score = 66 (28.3 bits), Expect = 2.3e-42, Sum P(3) = 2.3e-42
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL ++L+ K PG
Sbjct: 208 GILADEMGLGKTLQTIALLGYLKHYRNIPG 237
Score = 41 (19.5 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ V G+L M G Q + LK Y + + L + +S L + + +
Sbjct: 197 WLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVL-VPKSTLHNWMNEF 255
Query: 421 EWW 423
+ W
Sbjct: 256 KRW 258
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 271 (100.5 bits), Expect = 5.1e-42, Sum P(4) = 5.1e-42
Identities = 66/217 (30%), Positives = 108/217 (49%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDV--EELKMYDLVLTTYSTLA-- 407
TL+VCP SV W ++ ++ ++G ++ E + YDLV+T+Y+ +
Sbjct: 372 TLVVCPMSVMCQWAHEVASKVAQNAIRVLTFHGPNRHEIGIEAFRSYDLVITSYNLVVNE 431
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
++ SP+ + W RVILDEAH+I+N+ +V L A W +TGTP+QN D+
Sbjct: 432 LKRYGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDV 491
Query: 468 FSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDK----GLIG 523
F+L+ F+ F W+ + + G+R RL ++ + LRRTK K G +
Sbjct: 492 FALLRFVNVPNFQDLQQWKKNLNESML-GHR----RLNFIIKPLMLRRTKQKLQASGDMP 546
Query: 524 LQPKT-IEKYYVELSLEERKLYDELEGKAKGVVQDYI 559
P IE V+LS E +Y L +K + ++
Sbjct: 547 ALPSLKIELICVQLSKTEMAVYQILSAISKKIFTQFL 583
Score = 215 (80.7 bits), Expect = 5.1e-42, Sum P(4) = 5.1e-42
Identities = 47/137 (34%), Positives = 79/137 (57%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K +V SQ+ L ++ + LQ ++ L +G + AK+R V+ +F VLL SL
Sbjct: 789 KIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLRDFN--ANNEKRVLLLSL 846
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
A G G+NL A+ + +++ WNP +E QA DR++R GQ + I R + ++++E+RI
Sbjct: 847 TAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKS 906
Query: 836 LQDRKKKLAREAFRRKG 852
LQD K ++A+ +G
Sbjct: 907 LQDCKLEIAKVVLPEEG 923
Score = 83 (34.3 bits), Expect = 5.1e-42, Sum P(4) = 5.1e-42
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 246 EPLRGGIFADDMGLGKTLTLLSLI 269
+ + GGI ADDMGLGKTL++++LI
Sbjct: 226 QKISGGILADDMGLGKTLSMIALI 249
Score = 56 (24.8 bits), Expect = 5.1e-42, Sum P(4) = 5.1e-42
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 571 VLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSN 606
+L +LLRLRQ C + L +R + T EDV N
Sbjct: 638 ILVLLLRLRQFCCHPGLMIGMLRGAL---TAEDVQN 670
Score = 42 (19.8 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 51 MVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVL 88
M+G++R L D VKV +D G ++ V A L
Sbjct: 655 MIGMLRGALTAEDVQNVKV--DASDVEGQLKMDVLAEL 690
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 306 (112.8 bits), Expect = 8.2e-42, Sum P(3) = 8.2e-42
Identities = 66/148 (44%), Positives = 92/148 (62%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQF ML L+E+ L AG ++L GS KR +V+++F G V L SL
Sbjct: 983 KILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTT--KRQEVVDKFQR---GEVPVFLISL 1037
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
+A G G+NLTAA V +PWWNPAVE QA DR +RIGQ + V + +LI+ NSIEE+I +
Sbjct: 1038 RAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQK 1097
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDL 863
+Q K +LA+ + D + TDD+
Sbjct: 1098 IQQNKAELAKALLSEEVSDNKLSLTDDI 1125
Score = 204 (76.9 bits), Expect = 8.2e-42, Sum P(3) = 8.2e-42
Identities = 72/272 (26%), Positives = 131/272 (48%)
Query: 329 DDNVKGKSVG-----MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYY 383
DD GK++ ++ K + K I LIV P SV W ++++ T P L + +
Sbjct: 687 DDMGLGKTIQTLAHLLIEKQQGRLTKPI-LIVAPTSVIFNWANEIDKFT-P-QLSYQVLH 743
Query: 384 GDRTQD----VEELK----MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKN 435
G++ + +E ++ D+++T+Y+ + + + +K ++ ++LDEAH IKN
Sbjct: 744 GNKRHEQFGCLEGVENGENQVDIIITSYALITKDLAHYTD--RK--FYYLVLDEAHYIKN 799
Query: 436 ANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQ 495
+ + L A+ + +TGTP++N + ++ FL + + L + P+ +
Sbjct: 800 TKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPIEK 859
Query: 496 GNRKGLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAK 552
L R Q+L I LRRTKDK L PKT + + ++ +LY+ +
Sbjct: 860 HGE--LERKQLLNQRIKPFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMD 917
Query: 553 GVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
++D I L R+ VL LL+LRQ+C +
Sbjct: 918 SRLKDIIADKGLKRSQIEVLDALLKLRQVCNH 949
Score = 71 (30.1 bits), Expect = 8.2e-42, Sum P(3) = 8.2e-42
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAG 276
GI ADDMGLGKT+ L+ + ++K G
Sbjct: 683 GILADDMGLGKTIQTLAHLLIEKQQG 708
Score = 52 (23.4 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 542 KLYDELEGKAKGVVQDYINAGSLMRNYSTV-LSILLRLRQICTNLALCPSDVRSIIPSNT 600
K+ EL K + ++Q G Y +V L++ RL+ I + L S + +
Sbjct: 884 KIATELPPKTE-IIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLK 942
Query: 601 IEDVSNNPDLLK 612
+ V N+P LLK
Sbjct: 943 LRQVCNHPKLLK 954
Score = 44 (20.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 24/102 (23%), Positives = 45/102 (44%)
Query: 44 GTISG-REMVGLVREPLNPY-DSNAVKVLNTRTDQ--VGHIERSVAAVLAPLIDSGMILV 99
G + G R+ L R P+ + + ++LN R + + +A L P +
Sbjct: 841 GFLGGQRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIATELPPKTE------ 894
Query: 100 EGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQ 141
I+ R +G + +++ RL M S +KD+I + GL+
Sbjct: 895 --IIQTLRIEGKQ----AELYESVRLAMDSRLKDIIADKGLK 930
Score = 39 (18.8 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 316 ARGKKHKTVNTKMDDN---VKGKSV--GMLNKSSSFMGKKITLIVCPPSVFST------- 363
+R + H+T++ +DD KG S + +K F +++T I P + +T
Sbjct: 612 SRFQGHQTLSM-LDDQGMIAKGTSKLRALADKLKDF--QQVTTIPVPEGLNATLRTYQHQ 668
Query: 364 ---WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L E+ + G+L M G Q + L
Sbjct: 669 GLNWLQFLREYQLNGILADDMGLGKTIQTLAHL 701
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 306 (112.8 bits), Expect = 8.2e-42, Sum P(3) = 8.2e-42
Identities = 66/148 (44%), Positives = 92/148 (62%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQF ML L+E+ L AG ++L GS KR +V+++F G V L SL
Sbjct: 983 KILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTT--KRQEVVDKFQR---GEVPVFLISL 1037
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
+A G G+NLTAA V +PWWNPAVE QA DR +RIGQ + V + +LI+ NSIEE+I +
Sbjct: 1038 RAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQK 1097
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDL 863
+Q K +LA+ + D + TDD+
Sbjct: 1098 IQQNKAELAKALLSEEVSDNKLSLTDDI 1125
Score = 204 (76.9 bits), Expect = 8.2e-42, Sum P(3) = 8.2e-42
Identities = 72/272 (26%), Positives = 131/272 (48%)
Query: 329 DDNVKGKSVG-----MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYY 383
DD GK++ ++ K + K I LIV P SV W ++++ T P L + +
Sbjct: 687 DDMGLGKTIQTLAHLLIEKQQGRLTKPI-LIVAPTSVIFNWANEIDKFT-P-QLSYQVLH 743
Query: 384 GDRTQD----VEELK----MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKN 435
G++ + +E ++ D+++T+Y+ + + + +K ++ ++LDEAH IKN
Sbjct: 744 GNKRHEQFGCLEGVENGENQVDIIITSYALITKDLAHYTD--RK--FYYLVLDEAHYIKN 799
Query: 436 ANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQ 495
+ + L A+ + +TGTP++N + ++ FL + + L + P+ +
Sbjct: 800 TKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPIEK 859
Query: 496 GNRKGLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAK 552
L R Q+L I LRRTKDK L PKT + + ++ +LY+ +
Sbjct: 860 HGE--LERKQLLNQRIKPFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMD 917
Query: 553 GVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
++D I L R+ VL LL+LRQ+C +
Sbjct: 918 SRLKDIIADKGLKRSQIEVLDALLKLRQVCNH 949
Score = 71 (30.1 bits), Expect = 8.2e-42, Sum P(3) = 8.2e-42
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAG 276
GI ADDMGLGKT+ L+ + ++K G
Sbjct: 683 GILADDMGLGKTIQTLAHLLIEKQQG 708
Score = 52 (23.4 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 542 KLYDELEGKAKGVVQDYINAGSLMRNYSTV-LSILLRLRQICTNLALCPSDVRSIIPSNT 600
K+ EL K + ++Q G Y +V L++ RL+ I + L S + +
Sbjct: 884 KIATELPPKTE-IIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLK 942
Query: 601 IEDVSNNPDLLK 612
+ V N+P LLK
Sbjct: 943 LRQVCNHPKLLK 954
Score = 44 (20.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 24/102 (23%), Positives = 45/102 (44%)
Query: 44 GTISG-REMVGLVREPLNPY-DSNAVKVLNTRTDQ--VGHIERSVAAVLAPLIDSGMILV 99
G + G R+ L R P+ + + ++LN R + + +A L P +
Sbjct: 841 GFLGGQRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIATELPPKTE------ 894
Query: 100 EGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQ 141
I+ R +G + +++ RL M S +KD+I + GL+
Sbjct: 895 --IIQTLRIEGKQ----AELYESVRLAMDSRLKDIIADKGLK 930
Score = 39 (18.8 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 316 ARGKKHKTVNTKMDDN---VKGKSV--GMLNKSSSFMGKKITLIVCPPSVFST------- 363
+R + H+T++ +DD KG S + +K F +++T I P + +T
Sbjct: 612 SRFQGHQTLSM-LDDQGMIAKGTSKLRALADKLKDF--QQVTTIPVPEGLNATLRTYQHQ 668
Query: 364 ---WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L E+ + G+L M G Q + L
Sbjct: 669 GLNWLQFLREYQLNGILADDMGLGKTIQTLAHL 701
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 269 (99.8 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 64/194 (32%), Positives = 101/194 (52%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++D + + K K+ A
Sbjct: 373 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDTHLITNSGKMLVLDKLLAKL------- 422
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
++ ++ ++FSQ ++L +LE+ G++ RLDG ++R + I+ F P
Sbjct: 423 -REQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPN-SSKF 480
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ + S +A G G+NL A V L + WNP V+ QAMDR HRIGQK+ V++ RLI N++
Sbjct: 481 IFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTV 540
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 541 EERIVERAEIKLRL 554
Score = 233 (87.1 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 72/254 (28%), Positives = 125/254 (49%)
Query: 337 VGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEEL 393
+G L + G + L+ P S W+ + + VP L+ GD R + ++
Sbjct: 146 LGYLKHYRNIPGPHMVLV--PKSTLHNWMNEFKRW-VPS-LRAVCLIGDKDARAAFIRDV 201
Query: 394 KM---YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
M +D+ +T+Y + I+E +S KK W +++DEAH IKN ++ S V
Sbjct: 202 MMPGEWDVCVTSYE-MVIKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT 257
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMST 510
R ++TGTP+QN +L++L+ FL + F+ + S G++K + RL ++
Sbjct: 258 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKP 317
Query: 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST 570
LRR K + L PK K Y+ LS +R+ Y + K + D +N+ M +
Sbjct: 318 FLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMR 372
Query: 571 VLSILLRLRQICTN 584
+L+IL++LR+ C +
Sbjct: 373 LLNILMQLRKCCNH 386
Score = 66 (28.3 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL ++L+ K PG
Sbjct: 128 GILADEMGLGKTLQTIALLGYLKHYRNIPG 157
Score = 41 (19.5 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ V G+L M G Q + LK Y + + L + +S L + + +
Sbjct: 117 WMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVL-VPKSTLHNWMNEF 175
Query: 421 EWWRVILDEAHVI--KNANAQQSRTV 444
+ W L +I K+A A R V
Sbjct: 176 KRWVPSLRAVCLIGDKDARAAFIRDV 201
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 274 (101.5 bits), Expect = 4.1e-40, Sum P(3) = 4.1e-40
Identities = 66/194 (34%), Positives = 101/194 (52%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++D + S K+ A +
Sbjct: 408 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDTHLV------INSGKMVALDKLLPKVQ 458
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
++ ++ ++FSQ ++L +LE+ GF+ RLDG+ + R Q I+ F P
Sbjct: 459 EQG--SRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPN-SSKF 515
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ++ VK+ RLI N++
Sbjct: 516 IFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTV 575
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 576 EERIVERAEMKLRL 589
Score = 225 (84.3 bits), Expect = 4.1e-40, Sum P(3) = 4.1e-40
Identities = 73/254 (28%), Positives = 124/254 (48%)
Query: 337 VGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEEL 393
+G L + G + L+ P S W+ + + VP LK G +R + ++
Sbjct: 182 LGYLKHYRNIPGPHMVLV--PKSTLHNWMNEFKRW-VP-TLKAVCLIGNKDERAAFIRDV 237
Query: 394 KM---YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
M +D+ +T+Y + I E +S KK W +++DEAH IKN ++ S
Sbjct: 238 MMPGEWDVCVTSYE-MVIRE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTT 293
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMST 510
R ++TGTP+QN +L+SL+ FL + F+ S + S G++K + RL ++
Sbjct: 294 NRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDTNCL-GDQKLVERLHAVLRP 352
Query: 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST 570
LRR K + L PK K Y+ LS +R+ Y + K + D +N+ M +
Sbjct: 353 FLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMR 407
Query: 571 VLSILLRLRQICTN 584
+L+IL++LR+ C +
Sbjct: 408 LLNILMQLRKCCNH 421
Score = 66 (28.3 bits), Expect = 4.1e-40, Sum P(3) = 4.1e-40
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL ++L+ K PG
Sbjct: 164 GILADEMGLGKTLQTIALLGYLKHYRNIPG 193
Score = 44 (20.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 21/98 (21%), Positives = 42/98 (42%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + LK Y + + L + +S L + + +
Sbjct: 153 WMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVL-VPKSTLHNWMNEF 211
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I N + +++ + ++ W V T
Sbjct: 212 KRWVPTLKAVCLIGNKD-ERAAFIRDVMMPGEWDVCVT 248
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 260 (96.6 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 65/216 (30%), Positives = 108/216 (50%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
++ L H + C HP L PP ++D + + K K+ +
Sbjct: 398 LMNILMHLRKCV---NHPYLFDGAEPGPPFTTDQHLVDNSGKMVVLDKL--------LMK 446
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQF +ML LLE+ ++ RLDGS + R+ IE + P
Sbjct: 447 FKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPD-SKKF 505
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ + + +A G G+NL A V + + WNP + QAMDR HRIGQK+ V++ RLI N++
Sbjct: 506 IFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTV 565
Query: 830 EERILELQDRKKKLAREAFR--RKGKDQREVSTDDL 863
+ERI+E + K +L + R + Q+ + D+
Sbjct: 566 DERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDM 601
Score = 254 (94.5 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 79/277 (28%), Positives = 138/277 (49%)
Query: 320 KHKTVNTKMDDNVK-GKS---VGMLNKSSSFMGKKIT-LIVCPPSVFSTWITQLEEHTVP 374
+H +N + D + GK+ + M+ + K L++ P S W + ++ P
Sbjct: 147 QHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWC-P 205
Query: 375 GMLKTYMYYGD---RTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILD 428
+ + GD R Q + ++ + +D+ TTY + +++ +KK+ W +I+D
Sbjct: 206 S-INAVVLIGDEAARNQVLRDVILPQKFDVCCTTYEMMLK----VKTQLKKLNWRYIIID 260
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH IKN ++ S TV LN++ R ++TGTP+QN +L++L+ FL + F+ + S
Sbjct: 261 EAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSW 320
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELE 548
GN + RL ++ LRR K L PK K YV LS +R+ Y ++
Sbjct: 321 FSNDAMSGNTDLVQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKV- 379
Query: 549 GKAKGVVQDYIN-AGSLMRNYSTVLSILLRLRQICTN 584
K + D IN AG + + + +++IL+ LR+ C N
Sbjct: 380 -LMKDI--DIINGAGKVEK--ARLMNILMHLRK-CVN 410
Score = 68 (29.0 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 251 GIFADDMGLGKTLTLLSLIALDK 273
GI AD+MGLGKTL +S+I K
Sbjct: 153 GILADEMGLGKTLQTISMIGYMK 175
Score = 40 (19.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 831 ERILELQDRKKKLAR 845
ERI ELQD +K L++
Sbjct: 845 ERIEELQDSEKVLSQ 859
Score = 39 (18.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 604 VSNNPDLLKKLVEVLQ 619
+S N DL+++L +VLQ
Sbjct: 326 MSGNTDLVQRLHKVLQ 341
Score = 39 (18.8 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 12/63 (19%), Positives = 28/63 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L+ + + G+L M G Q + + K Y + + + + +S L++ +
Sbjct: 142 WLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVI-VPKSTLQNWANEF 200
Query: 421 EWW 423
+ W
Sbjct: 201 KKW 203
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 257 (95.5 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 63/194 (32%), Positives = 96/194 (49%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 431 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 480
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R I + PG
Sbjct: 481 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPG-SSKF 538
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 539 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 598
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 599 EERIVERAEMKLRL 612
Score = 232 (86.7 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 72/239 (30%), Positives = 122/239 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---VEELKM---YDLVLTTYSTL 406
+++ P S W+ + + VP L+ GD+ Q V ++ + +D+ +T+Y L
Sbjct: 218 MVLVPKSTLHNWMNEFKRW-VP-TLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEML 275
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I+E +S KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 276 -IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 331
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L++L+ FL + F+ + S G++K + RL +++ LRR K L P
Sbjct: 332 LWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 391
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYIN-AGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y + K + D +N AG L + +L+IL++LR+ C +
Sbjct: 392 KKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKLDK--MRLLNILMQLRKCCNH 444
Score = 70 (29.7 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 186 GILADEMGLGKTLQTISLLGYMKHYRNIPG 215
Score = 42 (19.8 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + L K Y + + L + +S L + + +
Sbjct: 175 WLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVL-VPKSTLHNWMNEF 233
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I + + Q++ V ++ W V T
Sbjct: 234 KRWVPTLRAVCLIGDKD-QRAAFVRDVLLPGEWDVCVT 270
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 255 (94.8 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 68/206 (33%), Positives = 103/206 (50%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++D I + K K+ A R
Sbjct: 429 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDEHIVSNSGKMVALDKLLA--------R 477
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR------------AQVI 757
K+ ++ ++FSQ ++L +LE+ G++ RLDG ++R + I
Sbjct: 478 IKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAI 537
Query: 758 EEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKED 817
E F P + + S +A G G+NL +A V L + WNP V+ QAMDR HRIGQK+
Sbjct: 538 EAFNAPN-SSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 596
Query: 818 VKIVRLIVRNSIEERILELQDRKKKL 843
V++ RLI N++EERI+E + K +L
Sbjct: 597 VRVFRLITDNTVEERIVERAEIKLRL 622
Score = 239 (89.2 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 73/254 (28%), Positives = 127/254 (50%)
Query: 337 VGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEEL 393
+G L +F G + L+ P S W+ + + VP L+ + GD R + +
Sbjct: 202 LGYLKHYRNFPGPHMVLV--PKSTLHNWMNEFKRW-VPS-LRVICFVGDKDVRAAFIRDE 257
Query: 394 KM---YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
M +D+ +T+Y + I+E +S KK W +++DEAH IKN ++ S V +
Sbjct: 258 MMPGEWDVCVTSYE-MVIKE---KSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 313
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMST 510
R ++TGTP+QN +L++L+ FL + F+ + S G++K + RL ++
Sbjct: 314 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKP 373
Query: 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST 570
LRR K L PK K Y+ LS +R+ Y ++ K + D +N+ M +
Sbjct: 374 FLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKI--LMKDI--DVLNSSGKM-DKMR 428
Query: 571 VLSILLRLRQICTN 584
+L+IL++LR+ C +
Sbjct: 429 LLNILMQLRKCCNH 442
Score = 65 (27.9 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL ++L+ K PG
Sbjct: 184 GILADEMGLGKTLQTIALLGYLKHYRNFPG 213
Score = 40 (19.1 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMY------DLVLTTYSTLAIEESWLE 414
W+ L E+ V G+L M G Q + LK Y +VL STL +W+
Sbjct: 173 WLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPGPHMVLVPKSTL---HNWMN 229
Query: 415 SPVKKIEWWRVI 426
+ + RVI
Sbjct: 230 EFKRWVPSLRVI 241
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 252 (93.8 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 62/194 (31%), Positives = 96/194 (49%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 446 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 495
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R + I + P
Sbjct: 496 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPN-STKF 553
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 614 EERIVERAEMKLRL 627
Score = 237 (88.5 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 71/238 (29%), Positives = 123/238 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---VEELKM---YDLVLTTYSTL 406
+++ P S W+++ + VP L++ GD+ Q V ++ + +D+ +T+Y L
Sbjct: 233 MVLVPKSTLHNWMSEFKRW-VP-TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I+E +S KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 291 -IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 346
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L+SL+ FL + F+ + S G++K + RL +++ LRR K L P
Sbjct: 347 LWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 406
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y + K + D +N+ M + +L+IL++LR+ C +
Sbjct: 407 KKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMRLLNILMQLRKCCNH 459
Score = 70 (29.7 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 201 GILADEMGLGKTLQTISLLGYMKHYRNIPG 230
Score = 42 (19.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 22/98 (22%), Positives = 41/98 (41%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + L K Y + + L + +S L + + +
Sbjct: 190 WLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVL-VPKSTLHNWMSEF 248
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I + Q++ V ++ W V T
Sbjct: 249 KRWVPTLRSVCLIGDKE-QRAAFVRDVLLPGEWDVCVT 285
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 252 (93.8 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 62/194 (31%), Positives = 96/194 (49%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 446 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 495
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R + I + P
Sbjct: 496 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPN-STKF 553
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 614 EERIVERAEMKLRL 627
Score = 237 (88.5 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 71/238 (29%), Positives = 123/238 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---VEELKM---YDLVLTTYSTL 406
+++ P S W+++ + VP L++ GD+ Q V ++ + +D+ +T+Y L
Sbjct: 233 MVLVPKSTLHNWMSEFKRW-VP-TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I+E +S KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 291 -IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 346
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L+SL+ FL + F+ + S G++K + RL +++ LRR K L P
Sbjct: 347 LWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 406
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y + K + D +N+ M + +L+IL++LR+ C +
Sbjct: 407 KKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMRLLNILMQLRKCCNH 459
Score = 70 (29.7 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 201 GILADEMGLGKTLQTISLLGYMKHYRNIPG 230
Score = 42 (19.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 22/98 (22%), Positives = 41/98 (41%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + L K Y + + L + +S L + + +
Sbjct: 190 WLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVL-VPKSTLHNWMSEF 248
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I + Q++ V ++ W V T
Sbjct: 249 KRWVPTLRSVCLIGDKE-QRAAFVRDVLLPGEWDVCVT 285
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 252 (93.8 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 62/194 (31%), Positives = 96/194 (49%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 446 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 495
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R + I + P
Sbjct: 496 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPN-STKF 553
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 614 EERIVERAEMKLRL 627
Score = 237 (88.5 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 71/238 (29%), Positives = 123/238 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---VEELKM---YDLVLTTYSTL 406
+++ P S W+++ + VP L++ GD+ Q V ++ + +D+ +T+Y L
Sbjct: 233 MVLVPKSTLHNWMSEFKRW-VP-TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I+E +S KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 291 -IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 346
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L+SL+ FL + F+ + S G++K + RL +++ LRR K L P
Sbjct: 347 LWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 406
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y + K + D +N+ M + +L+IL++LR+ C +
Sbjct: 407 KKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMRLLNILMQLRKCCNH 459
Score = 70 (29.7 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 201 GILADEMGLGKTLQTISLLGYMKHYRNIPG 230
Score = 42 (19.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 22/98 (22%), Positives = 41/98 (41%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + L K Y + + L + +S L + + +
Sbjct: 190 WLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVL-VPKSTLHNWMSEF 248
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I + Q++ V ++ W V T
Sbjct: 249 KRWVPTLRSVCLIGDKE-QRAAFVRDVLLPGEWDVCVT 285
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 224 (83.9 bits), Expect = 2.7e-39, Sum P(4) = 2.7e-39
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
+L SLKA G+N+ AAS V LL+ WWNP E+QA+DR HRIGQ V + R+ ++N++E
Sbjct: 510 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVE 569
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
ERIL L +RK+ + A K + ST+ R +S+
Sbjct: 570 ERILTLHERKRNIVASALGEKNWQKFCDSTNTRRSRISV 608
Score = 213 (80.0 bits), Expect = 2.7e-39, Sum P(4) = 2.7e-39
Identities = 46/130 (35%), Positives = 74/130 (56%)
Query: 419 KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEP 478
++ W RV+LDEAH IKN ++ +L AKRRW +TGTPI+N DL+S FL++ P
Sbjct: 210 RVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHP 269
Query: 479 FSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL---IGLQPK-TIEKYYV 534
+++ + + I+ P+ + G +LQ ++ I LRRTK+ + L + E+Y
Sbjct: 270 YAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTKEWSFYRKLELNSRWKFEEYAA 329
Query: 535 ELSLEERKLY 544
+ +L E Y
Sbjct: 330 DGTLHEHMAY 339
Score = 114 (45.2 bits), Expect = 2.7e-39, Sum P(4) = 2.7e-39
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 318 GKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPG-M 376
GK T++ + +K +S K + G TLIVCP SV W +++E
Sbjct: 86 GKTISTISLILLQKLKSQSKQRKRKGQNSGG---TLIVCPASVVKQWAREVKEKVSDEHK 142
Query: 377 LKTYMYYGD-RTQDVEELKMYDLVLTTYSTLAIE 409
L +++G RT+D E+ +YD+V+TTY+ + E
Sbjct: 143 LSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNE 176
Score = 90 (36.7 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 32/137 (23%), Positives = 55/137 (40%)
Query: 539 EERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPS 598
+E Y +LE ++ ++Y G+L + + +L +LLRLRQ C + L S
Sbjct: 308 KEWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTR 367
Query: 599 NTIEDVSNNP-DLLKKLVEVLQDGEDFXXXXXXXXXXXXXXTCCAHIFCRSCILKTLQHT 657
+ V P + L +++L+ T C H+FC C+ +
Sbjct: 368 KMSDGVRVAPRENLIMFLDLLKLSST-TCSVCSDPPKDPVVTLCGHVFCYECVSVNINGD 426
Query: 658 KPCCPLCR-HPLLQSDL 673
CP H L+ D+
Sbjct: 427 NNTCPALNCHSQLKHDV 443
Score = 88 (36.0 bits), Expect = 1.3e-36, Sum P(4) = 1.3e-36
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 242 DKRPEPLRGGIFADDMGLGKTLTLLSLIALDK 273
+KR GGI ADD GLGKT++ +SLI L K
Sbjct: 68 EKRSRHCLGGILADDQGLGKTISTISLILLQK 99
Score = 41 (19.5 bits), Expect = 2.7e-39, Sum P(4) = 2.7e-39
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 196 VIKSELFVHQKEGLGWLVRRE 216
V+ L HQK L W+ ++E
Sbjct: 48 VLTVPLMRHQKIALNWMRKKE 68
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 250 (93.1 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 62/194 (31%), Positives = 95/194 (48%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 445 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 494
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R I + P
Sbjct: 495 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPN-STKF 552
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 553 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 612
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 613 EERIVERAEMKLRL 626
Score = 238 (88.8 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 71/238 (29%), Positives = 124/238 (52%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---VEELKM---YDLVLTTYSTL 406
+++ P S W+++ ++ VP L++ GD+ Q V ++ + +D+ +T+Y L
Sbjct: 232 MVLVPKSTLHNWMSEFKKW-VP-TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 289
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I+E +S KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 290 -IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 345
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L+SL+ FL + F+ + S G++K + RL +++ LRR K L P
Sbjct: 346 LWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 405
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y + K + D +N+ M + +L+IL++LR+ C +
Sbjct: 406 KKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMRLLNILMQLRKCCNH 458
Score = 70 (29.7 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 200 GILADEMGLGKTLQTISLLGYMKHYRNIPG 229
Score = 42 (19.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 22/98 (22%), Positives = 41/98 (41%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + L K Y + + L + +S L + + +
Sbjct: 189 WLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVL-VPKSTLHNWMSEF 247
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I + Q++ V ++ W V T
Sbjct: 248 KKWVPTLRSVCLIGDKE-QRAAFVRDVLLPGEWDVCVT 284
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 250 (93.1 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 62/194 (31%), Positives = 95/194 (48%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 445 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 494
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R I + P
Sbjct: 495 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPN-STKF 552
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 553 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 612
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 613 EERIVERAEMKLRL 626
Score = 237 (88.5 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 71/238 (29%), Positives = 123/238 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---VEELKM---YDLVLTTYSTL 406
+++ P S W+++ + VP L++ GD+ Q V ++ + +D+ +T+Y L
Sbjct: 232 MVLVPKSTLHNWMSEFKRW-VP-TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 289
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I+E +S KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 290 -IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 345
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L+SL+ FL + F+ + S G++K + RL +++ LRR K L P
Sbjct: 346 LWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 405
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y + K + D +N+ M + +L+IL++LR+ C +
Sbjct: 406 KKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMRLLNILMQLRKCCNH 458
Score = 70 (29.7 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 200 GILADEMGLGKTLQTISLLGYMKHYRNIPG 229
Score = 42 (19.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 22/98 (22%), Positives = 41/98 (41%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + L K Y + + L + +S L + + +
Sbjct: 189 WLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVL-VPKSTLHNWMSEF 247
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I + Q++ V ++ W V T
Sbjct: 248 KRWVPTLRSVCLIGDKE-QRAAFVRDVLLPGEWDVCVT 284
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 250 (93.1 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 62/194 (31%), Positives = 95/194 (48%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 446 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 495
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R I + P
Sbjct: 496 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPN-STKF 553
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 614 EERIVERAEMKLRL 627
Score = 237 (88.5 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 71/238 (29%), Positives = 123/238 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---VEELKM---YDLVLTTYSTL 406
+++ P S W+++ + VP L++ GD+ Q V ++ + +D+ +T+Y L
Sbjct: 233 MVLVPKSTLHNWMSEFKRW-VP-TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I+E +S KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 291 -IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 346
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L+SL+ FL + F+ + S G++K + RL +++ LRR K L P
Sbjct: 347 LWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 406
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y + K + D +N+ M + +L+IL++LR+ C +
Sbjct: 407 KKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMRLLNILMQLRKCCNH 459
Score = 70 (29.7 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 201 GILADEMGLGKTLQTISLLGYMKHYRNIPG 230
Score = 42 (19.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 22/98 (22%), Positives = 41/98 (41%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ + G+L M G Q + L K Y + + L + +S L + + +
Sbjct: 190 WLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVL-VPKSTLHNWMSEF 248
Query: 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
+ W L +I + Q++ V ++ W V T
Sbjct: 249 KRWVPTLRSVCLIGDKE-QRAAFVRDVLLPGEWDVCVT 285
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 212 (79.7 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 63/218 (28%), Positives = 110/218 (50%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNAN-AQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+S +K I+WWR+ LDEA ++++++ + + L + RW +TGTPIQ D+F L
Sbjct: 841 KSALKCIKWWRICLDEAQMVESSSQTKYKKLALGLESHYRWCLTGTPIQRSLDDMFGLFE 900
Query: 473 FLQFEPFSVKSYWQSLI-QRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQ-PKTIE 530
FL+ EPFS + +W +I + LA G + L ++ ++ +R +K LQ P +
Sbjct: 901 FLRLEPFSSRYWWNCIILHKYLALGEQSFLDWFHCIVHSVMIRNSKAMIRNELQLPNQYD 960
Query: 531 K--YYVELSLEERKLY----DELEGKAKGVVQDYINAGSLMRNYS-----TVLSILLRLR 579
+ S+ E Y +E +A+ + Q Y G +++ S ++L+ LL LR
Sbjct: 961 NDTKLLRFSMVEAHYYQKKANECSQEARLLFQKYFRGGRSIQDISISHLNSILAPLLVLR 1020
Query: 580 QICTNLALCPSDVRSIIPSN-TIEDVSNNPDLLKKLVE 616
Q C + + V+ + S T+E LL +L+E
Sbjct: 1021 QTCQHFQVGGHAVKPLTMSTMTMEQ------LLDRLIE 1052
Score = 191 (72.3 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 49/174 (28%), Positives = 93/174 (53%)
Query: 689 TLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSM 748
T T++ + +D+ K ++FSQ+ +L ++ L+ + +
Sbjct: 1676 TTTTTTNTNTNTTNSNINIKKDES-IQKIIIFSQWADVLEIISRALKENEIQFAKAVHRG 1734
Query: 749 NAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDR 808
++ + A I +F P +LL +K G G+NL A+ VFL+EP NPA+E+QA++R
Sbjct: 1735 SSFEMA--INQF-RKDPNVNVLLLPLIKG-GNGLNLIEATHVFLVEPILNPALEKQAINR 1790
Query: 809 VHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDD 862
VHR GQ ++ I R I++N+IEE+++++ K++ +RK ++ + D+
Sbjct: 1791 VHRFGQNKETNIHRFIIKNTIEEKVVQMNQLKEQ------KRKNTNENTIDLDN 1838
Score = 113 (44.8 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 344 SSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKM--YDLVLT 401
++ +G + TLIV P ++F+ W ++ +HT G LK Y+Y G + ++ YDLVLT
Sbjct: 754 TTLVGSRATLIVAPNTIFTQWQEEIVKHT-NG-LKVYIYNGIYKDKINPFQLADYDLVLT 811
Query: 402 TYSTLA 407
TY L+
Sbjct: 812 TYDVLS 817
Score = 79 (32.9 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 217 NSEELPPFWE----EKGGGFVNVLTNYHT-------DKRPE-PLRGGIFADDMGLGKTLT 264
N++ + P W +K F N T T DK+ + L GGI AD+MGLGKT+
Sbjct: 506 NNDIIHPIWSRFLVDKREFFYNQFTGRLTLKEVLLSDKKDDLSLMGGILADEMGLGKTVE 565
Query: 265 LLSLI 269
L L+
Sbjct: 566 FLGLV 570
Score = 65 (27.9 bits), Expect = 5.2e-39, Sum P(5) = 5.2e-39
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 641 CAHIFCRSCILKTLQHTKPC----CPLCR--HPLLQSDLFSSPPESSDMDIAGKTLKNFT 694
C H FC C++ ++ C CP+CR + + S+ E+ ++ + +K
Sbjct: 1581 CGHSFCYDCVMFMIEKVPNCRTIQCPICRARSNIEEISYLSTDKENGEL-VDNSNVKGSY 1639
Query: 695 SSKVSA 700
+K+ +
Sbjct: 1640 GTKIES 1645
Score = 44 (20.5 bits), Expect = 7.3e-37, Sum P(5) = 7.3e-37
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 644 IFCRSCILKTLQHTK----PCCPLC 664
I CR C KT Q T+ P CP C
Sbjct: 1326 INCRECCDKT-QRTQNLESPVCPHC 1349
Score = 41 (19.5 bits), Expect = 4.3e-28, Sum P(4) = 4.3e-28
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 317 RGKKHKTV-N-TKMDDNVKGKSVGMLNKSSSFMGKKITLI 354
R KK + + N T++ DNVK S + S F G+ I+ +
Sbjct: 421 REKKKRFIFNITELYDNVKMDSDAVEISKSKFNGQMISTL 460
Score = 39 (18.8 bits), Expect = 2.3e-21, Sum P(4) = 2.3e-21
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 719 VFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEE 759
+F QF+ + L+E+ ++ K + + N Q IEE
Sbjct: 1120 LFKQFKNQINLIEKQIEKLSNKENNNNNNPNNSNN-QTIEE 1159
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 273 (101.2 bits), Expect = 8.5e-39, Sum P(3) = 8.5e-39
Identities = 67/222 (30%), Positives = 114/222 (51%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L + + CC HP L PP ++D + + ++K+ +
Sbjct: 465 LLNIMMQLRKCC---NHPYLFDGAEPGPPYTTDEHLV------YNAAKLQVLDKLLKKLK 515
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
++ ++ ++FSQ ++L +LE+ ++ R+DGS + R Q I+++ P
Sbjct: 516 EEG--SRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPD-SKKF 572
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V L + +A G G+NLT+A V L + WNP + QAMDR HRIGQK+ VK+ RL+ NS+
Sbjct: 573 VFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSV 632
Query: 830 EERILELQDRKKKLAREAFR--RKGKDQREVSTDDLRILMSL 869
EE+ILE +K +L + + R ++E D L+S+
Sbjct: 633 EEKILERATQKLRLDQLVIQQNRTSLKKKENKADSKDALLSM 674
Score = 244 (91.0 bits), Expect = 8.5e-39, Sum P(3) = 8.5e-39
Identities = 76/281 (27%), Positives = 141/281 (50%)
Query: 320 KHKTVNTKMDDNVKGKSVGMLNKSSSFMG-----KKIT---LIVCPPSVFSTWITQLEEH 371
K+K D+ GK++ ++ SF+G +KI L++ P S + W+ ++
Sbjct: 212 KNKIAGILADEMGLGKTL----QTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRW 267
Query: 372 TVPGMLKTYMYYGDRTQDVE--ELKM----YDLVLTTYSTLAIEESWLESPVKKIEWWRV 425
T P + ++ GD+ + E + K+ +D+V+ +Y + I E +SP+KKI W +
Sbjct: 268 T-PDV-NAFILQGDKEERAELIQKKLLGCDFDVVIASYEII-IRE---KSPLKKINWEYI 321
Query: 426 ILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS-VKSY 484
I+DEAH IKN + S+ + ++ R ++TGTP+QN +L++L+ FL + FS + +
Sbjct: 322 IIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDF 381
Query: 485 WQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLY 544
+ K + +L ++ LRR K L PK YV +S ++K Y
Sbjct: 382 DDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWY 441
Query: 545 DELEGKAKGVVQDYINAGSLMRNYST-VLSILLRLRQICTN 584
++ K D +N + + T +L+I+++LR+ C +
Sbjct: 442 KKILEKDL----DAVNGSNGSKESKTRLLNIMMQLRKCCNH 478
Score = 69 (29.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 233 VNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
VN L + H +K GI AD+MGLGKTL +S + + PG
Sbjct: 204 VNWLVSLHKNKI-----AGILADEMGLGKTLQTISFLGYLRYIEKIPG 246
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L ++ + G+L M G Q + L+ + + + +A +S L + +++I
Sbjct: 206 WLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIA-PKSTLNNWLREI 264
Query: 421 EWW 423
W
Sbjct: 265 NRW 267
Score = 37 (18.1 bits), Expect = 8.5e-39, Sum P(3) = 8.5e-39
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGG 231
+ +L +Q +G+ WLV ++ +E G G
Sbjct: 192 VNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLG 226
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 257 (95.5 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 79/274 (28%), Positives = 137/274 (50%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L++CPPS+ W ++ ++ P M K +Y G + + ++ D+V+T+Y
Sbjct: 1365 SLVICPPSLIGHWEQEINQYA-PFM-KVLVYAGSPSIRIPLRGQIPDADVVVTSYDVCRN 1422
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ +ES + K ++ +LDE H+IKNA+++ S++V + A+ R +++GTPIQN +L+
Sbjct: 1423 D---VES-LTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLELW 1478
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQG-NRKGLSRLQ----VLMSTIS-------LRRT 516
SL FL + + +P+A N K S+ Q + M ++ LRR
Sbjct: 1479 SLFDFLMPGFLGTEKVFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHKQVLPFMLRRL 1538
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K+ L L PK I+ YY ELS ++KLY + K ++ + GS + V L
Sbjct: 1539 KEDVLSDLPPKIIQDYYCELSDLQKKLYKDFAKTQKETIKTDVQ-GSEKEGKTHVFQALQ 1597
Query: 577 RLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDL 610
+R++C + AL S+ +S N DL
Sbjct: 1598 YMRKLCNHPALVMSEQHPKYAEINQFLISRNTDL 1631
Score = 235 (87.8 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 53/151 (35%), Positives = 85/151 (56%)
Query: 716 KSVVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772
++++F Q + ML ++E L +RLDGS + + R ++ +F N P VLL
Sbjct: 1688 RALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKF-NEDPS-IDVLL 1745
Query: 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEER 832
+ K G G+NLT A V +E WNP + QAMDR HR+GQK+ V + RLI ++++EE+
Sbjct: 1746 LTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEK 1805
Query: 833 ILELQDRKKKLAREAFRRKGKDQREVSTDDL 863
I+ LQ K +A ++ + + T+ L
Sbjct: 1806 IMGLQKFKMNIASTIVNQQNAGLQSMDTNQL 1836
Score = 69 (29.3 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 225 WEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALD 272
++++G ++ L YH GI DDMGLGKTL + +++ D
Sbjct: 1305 YQQEGVNWLAFLNKYHLH--------GILCDDMGLGKTLQTICIVSSD 1344
Score = 43 (20.2 bits), Expect = 7.9e-36, Sum P(3) = 7.9e-36
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
IK+ L +Q+EG+ WL
Sbjct: 1298 IKATLRKYQQEGVNWL 1313
Score = 39 (18.8 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 225 WEEKGGGFVNV--LTNYHTD 242
WE K GG + V L + TD
Sbjct: 454 WEAKHGGILGVRYLVSVRTD 473
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 267 (99.0 bits), Expect = 1.6e-38, Sum P(5) = 1.6e-38
Identities = 75/251 (29%), Positives = 124/251 (49%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+LI+CPPS+ W + +++ P LK +Y G T + +L D+++T+Y
Sbjct: 1335 SLIICPPSLTGHWENEFDQYA-P-FLKVVVYAGGPTVRLTLRPQLSDADIIVTSYDVARN 1392
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + L K E+ +LDE H+IKN+ ++ ++ V + A R ++TGTPIQN +L+
Sbjct: 1393 DLAVLN----KTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELW 1448
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQG-NRK--------GLSRLQVLMSTI---SLRRT 516
SL FL + +Q +P+A N K G+ L+ L + LRR
Sbjct: 1449 SLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRL 1508
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K+ L L PK I+ YY EL +++LY + K K VV+ I + + L
Sbjct: 1509 KEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQ 1568
Query: 577 RLRQICTNLAL 587
+R++C + AL
Sbjct: 1569 YMRKLCNHPAL 1579
Score = 232 (86.7 bits), Expect = 1.6e-38, Sum P(5) = 1.6e-38
Identities = 53/151 (35%), Positives = 84/151 (55%)
Query: 716 KSVVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772
++++F Q + ML ++E L +RLDGS++ + R +V+ +F N P +LL
Sbjct: 1648 RALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKF-NEDPSIDCLLL 1706
Query: 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEER 832
+ K G G+NLT A V +E WNP + QAMDR HRIGQK+ V + R+I + ++EE+
Sbjct: 1707 TT-KVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEK 1765
Query: 833 ILELQDRKKKLAREAFRRKGKDQREVSTDDL 863
I+ LQ K +A ++ + T L
Sbjct: 1766 IMGLQKFKMNIASTVVNQQNSGLASMDTHQL 1796
Score = 72 (30.4 bits), Expect = 1.6e-38, Sum P(5) = 1.6e-38
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 225 WEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDK 273
+++ G ++ L YH GI DDMGLGKTL + +IA D+
Sbjct: 1275 YQQDGVNWLAFLNKYHLH--------GILCDDMGLGKTLQTICIIASDQ 1315
Score = 42 (19.8 bits), Expect = 1.6e-38, Sum P(5) = 1.6e-38
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 32 VIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPL 91
++ N+V + Y S ++ + L P S VK LN T ++ + ++ ++LA L
Sbjct: 446 LLENVVRIVLYGLNQSDDDVQSVAASILTPITSEFVK-LNNSTIEI--LVTTIWSLLARL 502
Query: 92 ID 93
D
Sbjct: 503 DD 504
Score = 40 (19.1 bits), Expect = 7.8e-36, Sum P(4) = 7.8e-36
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
IK+ L +Q++G+ WL
Sbjct: 1268 IKATLRKYQQDGVNWL 1283
Score = 38 (18.4 bits), Expect = 1.6e-38, Sum P(5) = 1.6e-38
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 211 WLVRRENSEELPPFWEE 227
WL + E+LP F E
Sbjct: 772 WLQKHPEGEKLPSFVSE 788
Score = 38 (18.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 428 DEAHVIK-NANAQQSRTVTNLNAKRRWVVTGTP 459
D+A+ K NAN + +R + K++ TP
Sbjct: 184 DKANENKSNANKKSARMLAMARRKKKMSAKNTP 216
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 252 (93.8 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 62/157 (39%), Positives = 88/157 (56%)
Query: 716 KSVVFSQFRKML-ILLEEPLQAA--GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772
+++VF Q ++ML I+ E LQ + LRLDG++ A +R ++ F N P VLL
Sbjct: 1687 RALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRF-NSDPSYD-VLL 1744
Query: 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEER 832
+ G G+NLT A V +E WNP + QAMDR HRIGQK+ V + RLI R ++EE+
Sbjct: 1745 LTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEK 1804
Query: 833 ILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
IL LQ K +A ++ + TD L L +L
Sbjct: 1805 ILNLQRFKIDVASTVVNQQNAGLNTMDTDQLLDLFNL 1841
Score = 237 (88.5 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 74/286 (25%), Positives = 137/286 (47%)
Query: 318 GKKHKTVN-TKMDDNVKGKSVGMLNKSSSFMGKKI-TLIVCPPSVFSTWITQLEEHTVPG 375
GK +T+ D +++ + + S +K+ +LI+CPPS+ W +++++ P
Sbjct: 1348 GKTLQTICIVASDHHMRAEDFAKTQRPES---RKVPSLIICPPSLSGHWQQEVKQYA-P- 1402
Query: 376 MLKTYMYYG---DRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHV 432
L Y G +R++ L D+V+T+Y + L + I W +LDE H+
Sbjct: 1403 FLNCVAYVGPPAERSKLQGSLADADIVVTSYDICRNDNDVL----RPISWNYCVLDEGHL 1458
Query: 433 IKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRP 492
IKN A+ + V +N+ R +++GTPIQN +L+SL FL + + +P
Sbjct: 1459 IKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKP 1518
Query: 493 LAQGN--------RKGLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEER 541
+A G ++ L + LRR K++ L L PK I+ YY + S ++
Sbjct: 1519 IATSRFSKSSKEQEAGALAIEALHKQVLPFLLRRLKEEVLNDLPPKIIQNYYCDPSELQK 1578
Query: 542 KLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
KL+++ K + +Q+ + + S + + L +R++C + AL
Sbjct: 1579 KLFEDFTKKEQKALQEKMGS-SEKADKEHIFQALQYMRRLCNSPAL 1623
Score = 71 (30.1 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 220 ELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALD 272
EL P+ +E G ++ L Y+ GI DDMGLGKTL + ++A D
Sbjct: 1317 ELRPYQQE-GVNWLAFLNRYNLH--------GILCDDMGLGKTLQTICIVASD 1360
Score = 49 (22.3 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
IK+EL +Q+EG+ WL
Sbjct: 1314 IKAELRPYQQEGVNWL 1329
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 250 (93.1 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 61/194 (31%), Positives = 96/194 (49%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++D+ + + K K+
Sbjct: 429 LLNVLMQLRKCC---NHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKL------- 478
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ + RLDG ++R I F P
Sbjct: 479 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPN-SSKF 536
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ + S +A G G+NL A V + + WNP V+ QAMDR HRIGQK+ V++ R I N++
Sbjct: 537 LFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTV 596
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 597 EERIVERAEMKLRL 610
Score = 228 (85.3 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 68/238 (28%), Positives = 117/238 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDR---TQDVEELKM---YDLVLTTYSTL 406
+++ P S W+ + + VP LK GDR T + + + +D+ +T+Y L
Sbjct: 216 MVLVPKSTLYNWMNEFKRW-VPS-LKAVCLIGDREERTAFIRDTLLPGEWDVCVTSYEML 273
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
IE + KK W +++DEAH IKN ++ S V R ++TGTP+QN +
Sbjct: 274 IIERAVF----KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 329
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L++L+ FL + F+ + + G+ K + RL ++ LRR K L P
Sbjct: 330 LWALLNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKADVEKSLLP 389
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K YV LS +R+ Y ++ K + D +N+ M + +L++L++LR+ C +
Sbjct: 390 KKEIKIYVGLSKMQREWYTKI--LMKDI--DILNSAGKM-DKMRLLNVLMQLRKCCNH 442
Score = 70 (29.7 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL +SL+ K PG
Sbjct: 184 GILADEMGLGKTLQTISLLGYMKHYRNIPG 213
Score = 38 (18.4 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 820 IVRLIVRNSIEERILELQDRKKKLAREAFRRKGK 853
++ LI R ++E E ++KK+ R + +K K
Sbjct: 986 LITLIERENMELEEREKAEKKKRGPRTSSAQKRK 1019
Score = 38 (18.4 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L E+ + G+L M G Q + L
Sbjct: 173 WLISLYENGINGILADEMGLGKTLQTISLL 202
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 247 (92.0 bits), Expect = 9.2e-38, Sum P(3) = 9.2e-38
Identities = 85/298 (28%), Positives = 146/298 (48%)
Query: 335 KSVGMLNKSSSFMG-KKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVE 391
+++ +L S + G + LI+ P S S W + P L+ ++G + + D++
Sbjct: 310 QTISLLGYLSEYKGIRGPHLIIAPKSTLSGWAKEFTRWC-P-FLRVVRFHGSKEEREDIK 367
Query: 392 E----LKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNL 447
+ K +D+ +TTY +AI E +S KK W +I+DEAH IKN N+ S+ V
Sbjct: 368 KNQLIFKKFDVCITTYE-VAIRE---KSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMF 423
Query: 448 NAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKS---YWQSLIQRPLAQGNRKGLSRL 504
N++ R ++TGTP+QN +L+SL+ FL + FS W L + ++ + +L
Sbjct: 424 NSQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWFDLANN--TENQQEVIDKL 481
Query: 505 QVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINA-GS 563
++ LRR K + L PK K +V LS +++ Y L K V + A G+
Sbjct: 482 HKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSKDLDAV--VVGAKGN 539
Query: 564 LMRNYSTVLSILLRLRQICTNLALCP-SDVRSIIPSNTIEDVSNNPDLLKKLVEVLQD 620
R +L+I ++LR+ C + L ++ + D S LL KL++ L++
Sbjct: 540 TGR--VRLLNICMQLRKACNHPYLFDGAEEEPYTTGEHLIDNSGKMALLDKLLKKLKE 595
Score = 231 (86.4 bits), Expect = 9.2e-38, Sum P(3) = 9.2e-38
Identities = 49/133 (36%), Positives = 77/133 (57%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ ++ ++FSQ +ML +LE+ + G+K R+DGS + R IE + PG
Sbjct: 594 KERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAF 653
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
LL + +A G G+ L A V L + WNP ++ QA DR HRIGQ + V + R + NS+E
Sbjct: 654 LLTT-RAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSME 712
Query: 831 ERILELQDRKKKL 843
E+++E + K +L
Sbjct: 713 EKMVEKAEMKLQL 725
Score = 69 (29.3 bits), Expect = 9.2e-38, Sum P(3) = 9.2e-38
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 251 GIFADDMGLGKTLTLLSLIA-LDKCAGV 277
GI AD+MGLGKTL +SL+ L + G+
Sbjct: 297 GILADEMGLGKTLQTISLLGYLSEYKGI 324
Score = 42 (19.8 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ QL E + G+L M G Q + L
Sbjct: 286 WLIQLYERGINGILADEMGLGKTLQTISLL 315
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 241 (89.9 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 60/152 (39%), Positives = 89/152 (58%)
Query: 720 FSQFRKMLIL-LEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKAS 778
F++F ++L+ L A + L G K+R +++ F + G G P + L SLKA
Sbjct: 858 FTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS-GDG-PPIFLLSLKAG 915
Query: 779 GAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQD 838
G G+NLTAA+ V L+ WWNPAVE QA DR RIGQ+ V++ + I ++EE+I E+ +
Sbjct: 916 GTGLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIE 975
Query: 839 RKKKLAREAFRRKGKDQ-REVSTDDLRILMSL 869
KK LA + G+ E+ST DLR + +L
Sbjct: 976 EKKALA-DLVVTDGEGWLTELSTRDLREVFAL 1006
Score = 234 (87.4 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 71/242 (29%), Positives = 121/242 (50%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMY----DLVLTTYSTLA 407
TL++CP S+ W Q P L+ Y ++G E L+ + DLV++TY+T
Sbjct: 588 TLLLCPMSLVGNW-PQEAARFAPN-LRVYAHHGGARLHGEALRDHLERTDLVVSTYTTAT 645
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
+ L + EW RV+LDEA +KN+ ++ ++ V L A R +TGTP++N +L
Sbjct: 646 RDIDELA----EYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAEL 701
Query: 468 FSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLSRLQVLMSTISLRRTK-DKGLIGLQ 525
+S+M FL +++ P+ + G+ + RL+ LRR K D +I
Sbjct: 702 WSIMDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTRPYILRRLKTDPAIIDDL 761
Query: 526 PKTIE-KYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
P+ IE K Y +L+ E+ LY + +++ N + R VL+ + +L+Q+C +
Sbjct: 762 PEKIEIKQYCQLTTEQASLYQAV---VADMMEKIENTEGIERR-GNVLAAMAKLKQVCNH 817
Query: 585 LA 586
A
Sbjct: 818 PA 819
Score = 68 (29.0 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 250 GGIFADDMGLGKTLTLLSLIALD 272
G ADDMGLGKT+ LL+L L+
Sbjct: 553 GSCLADDMGLGKTVQLLALETLE 575
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 235 (87.8 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 61/181 (33%), Positives = 95/181 (52%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ A+ + L+ RW V+GTP+Q G DL+ L+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL--IGLQPKTIE 530
FL +P+ VK +W L+ RP RK L L++ I R K + I + P+T
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYC---RKNSQPLYSLIAKIMWRSAKKDVIDQIQIPPQTEN 920
Query: 531 KYYVELSLEERKLYD---EL---EGKAK-GVVQDY-INAGSL-MRNYSTVLSILLRLRQI 581
+++ S ER Y E+ + AK + D+ + SL R +++L LLRLRQ
Sbjct: 921 IHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRLRQA 980
Query: 582 C 582
C
Sbjct: 981 C 981
Score = 194 (73.4 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 57/203 (28%), Positives = 97/203 (47%)
Query: 641 CAHIFCRSCILKTLQH----TKPC---CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC CI ++ T+ C +CR ++ F++ + + DI +
Sbjct: 1447 CGHCFCNECIAIIIEQYSVGTRRSSIKCAICRQTTSHKEISYVFTAETANQEDDIP---V 1503
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + K P KS+VFS ++ +L ++ + L +++G
Sbjct: 1504 KGSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIIAKALYDNNMTFSQINGISKF 1563
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
++ + +P +LL L G+N+ A+ V L+EP NPA E QA+ RVH
Sbjct: 1564 QENLSAFKY--DPKIN---ILLLPLHTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVH 1618
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1619 RIGQTKSTIVHRFLIKATIEERM 1641
Score = 89 (36.4 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMY---DLVLTTYSTLAI 408
TLI+ P S+ W+ ++ H L+ +Y G + + M D+V+TTY L
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLRT 777
Query: 409 EESWLESP 416
E ++++ P
Sbjct: 778 ELNYVDIP 785
Score = 79 (32.9 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 29/82 (35%), Positives = 38/82 (46%)
Query: 204 HQKEGLGWLVRRENSEELPP-------FWEE--KGGGFVNVLTNYHTDK--RPEPLRG-- 250
+Q E + W++ REN P W E G V + N T R P G
Sbjct: 310 YQSEAVNWMLHRENFTNTPGGENALHFLWREVITLDG-VKIYYNPFTGCVIREYPFAGPQ 368
Query: 251 ---GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ +L+LI
Sbjct: 369 WPGGILADEMGLGKTVEVLALI 390
Score = 42 (19.8 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 397 DLVLTTYSTLAIE--ESWLESPVKKIEWWRVILDEAHVI 433
D+ LT ++ +E E+W + E+W V+ D I
Sbjct: 1313 DVKLTEEGSIFLELFEAWKKEYKLLHEYWMVLRDHVSAI 1351
Score = 37 (18.1 bits), Expect = 2.0e-21, Sum P(4) = 2.0e-21
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 842 KLAREAFRRKGKDQREVSTDDLRILMS 868
+L RE R + + ++ TD L+ L S
Sbjct: 1045 ELYREVLRSSEEHKEKLKTDSLQRLHS 1071
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 235 (87.8 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 61/181 (33%), Positives = 95/181 (52%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ A+ + L+ RW V+GTP+Q G DL+ L+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL--IGLQPKTIE 530
FL +P+ VK +W L+ RP RK L L++ I R K + I + P+T
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYC---RKNSQPLYSLIAKIMWRSAKKDVIDQIQIPPQTEN 920
Query: 531 KYYVELSLEERKLYD---EL---EGKAK-GVVQDY-INAGSL-MRNYSTVLSILLRLRQI 581
+++ S ER Y E+ + AK + D+ + SL R +++L LLRLRQ
Sbjct: 921 IHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRLRQA 980
Query: 582 C 582
C
Sbjct: 981 C 981
Score = 194 (73.4 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 57/203 (28%), Positives = 97/203 (47%)
Query: 641 CAHIFCRSCILKTLQH----TKPC---CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC CI ++ T+ C +CR ++ F++ + + DI +
Sbjct: 1447 CGHCFCNECIAIIIEQYSVGTRRSSIKCAICRQTTSHKEISYVFTAETANQEDDIP---V 1503
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + K P KS+VFS ++ +L ++ + L +++G
Sbjct: 1504 KGSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIIAKALYDNNMTFSQINGISKF 1563
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
++ + +P +LL L G+N+ A+ V L+EP NPA E QA+ RVH
Sbjct: 1564 QENLSAFKY--DPKIN---ILLLPLHTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVH 1618
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1619 RIGQTKSTIVHRFLIKATIEERM 1641
Score = 89 (36.4 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMY---DLVLTTYSTLAI 408
TLI+ P S+ W+ ++ H L+ +Y G + + M D+V+TTY L
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLRT 777
Query: 409 EESWLESP 416
E ++++ P
Sbjct: 778 ELNYVDIP 785
Score = 79 (32.9 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 29/82 (35%), Positives = 38/82 (46%)
Query: 204 HQKEGLGWLVRRENSEELPP-------FWEE--KGGGFVNVLTNYHTDK--RPEPLRG-- 250
+Q E + W++ REN P W E G V + N T R P G
Sbjct: 305 YQSEAVNWMLHRENFTNTPGGENALHFLWREVITLDG-VKIYYNPFTGCVIREYPFAGPQ 363
Query: 251 ---GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ +L+LI
Sbjct: 364 WPGGILADEMGLGKTVEVLALI 385
Score = 42 (19.8 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 397 DLVLTTYSTLAIE--ESWLESPVKKIEWWRVILDEAHVI 433
D+ LT ++ +E E+W + E+W V+ D I
Sbjct: 1313 DVKLTEEGSIFLELFEAWKKEYKLLHEYWMVLRDHVSAI 1351
Score = 37 (18.1 bits), Expect = 2.0e-21, Sum P(4) = 2.0e-21
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 842 KLAREAFRRKGKDQREVSTDDLRILMS 868
+L RE R + + ++ TD L+ L S
Sbjct: 1045 ELYREVLRSSEEHKEKLKTDSLQRLHS 1071
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 240 (89.5 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 58/155 (37%), Positives = 82/155 (52%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E L LRLDGS+ +R ++ F N P VLL +
Sbjct: 476 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PS-IDVLLLT 533
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK V + RLI R ++EE+I+
Sbjct: 534 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 593
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + TD L L +L
Sbjct: 594 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 628
Score = 220 (82.5 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 67/229 (29%), Positives = 117/229 (51%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ + ++K ++L++ +Y +
Sbjct: 157 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRN 216
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 217 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 272
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQ---VL-MSTIS-------LRRT 516
SL FL + + + +P LA + + SR Q VL M + LRR
Sbjct: 273 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRM 332
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGSL 564
K+ L L PK I+ YY LS + +LY++ + +AK V + +++ +L
Sbjct: 333 KEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATL 381
Score = 73 (30.8 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI DDMGLGKTL + ++A D C
Sbjct: 115 GILCDDMGLGKTLQSICILAGDHC 138
Score = 41 (19.5 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I +EL +Q++G+ WL
Sbjct: 90 INAELRKYQQDGVNWL 105
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 287 (106.1 bits), Expect = 6.3e-37, Sum P(3) = 6.3e-37
Identities = 62/158 (39%), Positives = 94/158 (59%)
Query: 712 KPTTKSV-VFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
+ T K + +FSQF KML ++ L LDG+ +++R ++ F N G G +
Sbjct: 909 RSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRF-NEGEGD--L 965
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L SLKA G G+NLT A V L + WWNPAVE+QA DR +R+GQK V++++L+ +IE
Sbjct: 966 FLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTIE 1025
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLR-ILM 867
E++ ELQ+ KK L E + ++ +++R ILM
Sbjct: 1026 EKMHELQESKKNLIAEVIEPGEEKLSSITEEEIRDILM 1063
Score = 177 (67.4 bits), Expect = 6.3e-37, Sum P(3) = 6.3e-37
Identities = 64/249 (25%), Positives = 123/249 (49%)
Query: 349 KKIT-LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEELKMYDLVLTTYS 404
KK+ L+V P S+ W+++L++ P ++ + G +R + ++++ +D+V+T+Y
Sbjct: 662 KKLPILVVSPSSLVYNWLSELKKFA-PH-IRAVIADGNQAERRKILKDVAEFDVVITSYP 719
Query: 405 TLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
L + + S + + LDEA KN Q +R V + A+ R+ +TGTP++N
Sbjct: 720 LLRRD---IRSYARPFH--TLFLDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSL 774
Query: 465 FDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGL 524
+L+S+ + E + + L + +A+ R++ + LRR K+ L L
Sbjct: 775 EELWSIFHVVFPELLPGRKEFGDLRREDIAK-------RVKPFV----LRRLKEDVLKEL 823
Query: 525 QPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K EL ++++LY K + +++ +L +N +L+ L RLRQIC +
Sbjct: 824 PDKIEHLQSSELLPDQKRLYAAYLAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCH 883
Query: 585 LALCPSDVR 593
AL D +
Sbjct: 884 PALFVDDYK 892
Score = 70 (29.7 bits), Expect = 6.3e-37, Sum P(3) = 6.3e-37
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
GGI ADDMGLGKTL ++ I
Sbjct: 633 GGILADDMGLGKTLQSIAYI 652
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 251 (93.4 bits), Expect = 9.1e-37, Sum P(4) = 9.1e-37
Identities = 60/155 (38%), Positives = 85/155 (54%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E+ L Q G LRLDGS+ A R ++ F N P VLL +
Sbjct: 1658 LIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNND-PS-IDVLLLT 1715
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK V + RLI R ++EE+I+
Sbjct: 1716 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1775
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + T+ L L +L
Sbjct: 1776 GLQKFKMTIANTVISQENASLQSMGTEQLLNLFTL 1810
Score = 229 (85.7 bits), Expect = 9.1e-37, Sum P(4) = 9.1e-37
Identities = 69/228 (30%), Positives = 114/228 (50%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+++VCPP++ W+ ++ + L Y G T+ ++K ++L++ +Y +
Sbjct: 1339 SIVVCPPTLTGHWVDEVGKFCSKEFLNPLHYTGPPTERARLQHQVKKHNLIVASYDVVRN 1398
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ + L A R +++GTPIQN +L+
Sbjct: 1399 DVEFF----RDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRLILSGTPIQNNVLELW 1454
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQ---VL-MSTIS-------LRRT 516
SL FL + + + +P LA + K SR Q VL M + LRR
Sbjct: 1455 SLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALHRQVLPFLLRRM 1514
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGS 563
KD L L PK I+ YY LS + +LY++ + +AK V D I+ S
Sbjct: 1515 KDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVISTAS 1562
Score = 65 (27.9 bits), Expect = 9.1e-37, Sum P(4) = 9.1e-37
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 251 GIFADDMGLGKTLTLLSLIALD 272
GI DDMGLGKTL + ++A D
Sbjct: 1297 GILCDDMGLGKTLQSICILAGD 1318
Score = 46 (21.3 bits), Expect = 9.1e-37, Sum P(4) = 9.1e-37
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
IK+EL +Q++G+ WL
Sbjct: 1272 IKAELRKYQQDGVNWL 1287
Score = 43 (20.2 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 215 RENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIA 270
+E ++ LP WE G N L D +G A D L +L +L + A
Sbjct: 1050 KELTKTLPYLWESMTGPLRNALDAQEFDSSQLLKQGDSVAQD--LVNSLQVLEVTA 1103
Score = 37 (18.1 bits), Expect = 8.4e-15, Sum P(3) = 8.4e-15
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 524 LQPKTIEKYYVELSLEERKLYD-----ELEGKAKGVVQDYINAGSLMRNY 568
++ K E++++E L+ RKL + ++ + + QD +N + + Y
Sbjct: 1244 IRQKARERHFLEQLLDGRKLENYKIPVPIKAELRKYQQDGVNWLAFLNKY 1293
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 271 (100.5 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 67/217 (30%), Positives = 110/217 (50%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L + + CC HP L PP ++D + F S K+ +
Sbjct: 453 LLNIVMQLRKCC---NHPYLFEGAEPGPPYTTDEHLI------FNSGKMIILDKLLKRLK 503
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
+K ++ ++FSQ ++L +LE+ F+ R+DGS + ++R + I+E+ P
Sbjct: 504 EKG--SRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPN-SEKF 560
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V L + +A G G+NL A V L + WNP + QAMDR HRIGQK+ V + R + N+I
Sbjct: 561 VFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAI 620
Query: 830 EERILELQDRKKKLAREAFRR-KGKDQREV--STDDL 863
EE+++E +K +L + ++ GK + S DDL
Sbjct: 621 EEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKDDL 657
Score = 193 (73.0 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 61/240 (25%), Positives = 121/240 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM---YDLVLTTYSTL 406
LI+ P S W + + T P + + +GD R V + + +D+++T+Y +
Sbjct: 237 LIIVPKSTLDNWRREFLKWT-PNV-NVLVLHGDKDTRADIVRNIILEARFDVLITSYE-M 293
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I E ++ +K++ W +++DEAH IKN + S+ + +K R ++TGTP+QN +
Sbjct: 294 VIRE---KNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHE 350
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRK-GLSRLQVLMSTISLRRTKDKGLIGLQ 525
L++L+ FL + F + ++ ++ +++ + +L +++ LRR K L
Sbjct: 351 LWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLL 410
Query: 526 PKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST-VLSILLRLRQICTN 584
PK YV ++ + + Y L K + D +N R T +L+I+++LR+ C +
Sbjct: 411 PKIETNVYVGMTDMQIQWYKSL--LEKDI--DAVNGAVGKREGKTRLLNIVMQLRKCCNH 466
Score = 64 (27.6 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 233 VNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
+N L + H +K GI AD+MGLGKTL +S +
Sbjct: 192 LNWLISLHENKL-----SGILADEMGLGKTLQTISFL 223
Score = 40 (19.1 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L E+ + G+L M G Q + L
Sbjct: 194 WLISLHENKLSGILADEMGLGKTLQTISFL 223
Score = 38 (18.4 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 197 IKS-ELFVHQKEGLGWLVR-REN 217
+KS +L +Q +GL WL+ EN
Sbjct: 179 VKSGKLRDYQVQGLNWLISLHEN 201
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 226 (84.6 bits), Expect = 4.4e-36, Sum P(4) = 4.4e-36
Identities = 58/180 (32%), Positives = 96/180 (53%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ + + L+ RW ++GTP+Q G DLF L+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGL-SRLQVLMSTISLRRTKDKGLIGLQPKTIEK 531
FL EP+ VK +W L+ RP + N + L S + ++ + + D+ I + P+T E
Sbjct: 869 FLGIEPYCVKHWWVRLLYRPYCKKNPQPLYSFIAKILWRSAKKDVIDQ--IQIPPQTEEI 926
Query: 532 YYVELSLEERKLYD---EL---EGKAK-GVVQDY-INAGSL-MRNYSTVLSILLRLRQIC 582
+++ S ER Y E+ + K + D+ + SL R +++L LLRLRQ C
Sbjct: 927 HWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQAC 986
Score = 185 (70.2 bits), Expect = 4.4e-36, Sum P(4) = 4.4e-36
Identities = 57/203 (28%), Positives = 95/203 (46%)
Query: 641 CAHIFCRSCILKTLQ------HTKPC-CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC CI ++ H C +CR ++ F+S S + DI +
Sbjct: 1453 CGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKASQEEDIP---V 1509
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + + P K++VFS ++ +L ++ + L + ++
Sbjct: 1510 KGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RV 1566
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
K + + F + P +LL L G+ + A+ V L+EP NPA E QA+ RVH
Sbjct: 1567 KTFQENLSAFKHD-PQ-INILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1624
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1625 RIGQTKPTIVHRFLIKATIEERM 1647
Score = 89 (36.4 bits), Expect = 4.4e-36, Sum P(4) = 4.4e-36
Identities = 32/126 (25%), Positives = 55/126 (43%)
Query: 159 KERKGERGVKSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENS 218
++ + E + +DE++ V + + L +Q+E + W++++E+
Sbjct: 267 EDSESEPEGQDIDELYHFVKQTHQQETQSIHVDVQHPALTPVLRPYQREAVNWMLQQEHF 326
Query: 219 EELPP-------FWEE--KGGG---FVNVLTNYHTDKRPE--P-LRGGIFADDMGLGKTL 263
P W E G + N T + P P L GGI AD+MGLGKT+
Sbjct: 327 RSAPASENALHFLWREIVTSEGLKLYYNPYTGCIIREYPNAGPQLLGGILADEMGLGKTV 386
Query: 264 TLLSLI 269
+L+LI
Sbjct: 387 EVLALI 392
Score = 84 (34.6 bits), Expect = 4.4e-36, Sum P(4) = 4.4e-36
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEE---LKMYDLVLTTYSTL 406
+ TLI+ P S+ W+ ++ H L+ +Y G + + L D+V+ TY L
Sbjct: 721 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 780
Query: 407 AIEESWLESP 416
E ++++ P
Sbjct: 781 RSELNYVDIP 790
Score = 39 (18.8 bits), Expect = 6.0e-31, Sum P(4) = 6.0e-31
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 238 NYHTDKRPEPL 248
N H D+R EPL
Sbjct: 24 NMHEDRRNEPL 34
Score = 37 (18.1 bits), Expect = 3.9e-26, Sum P(4) = 3.9e-26
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 344 SSFMGKKITLIVCPPSVFSTWITQLEEHTV 373
SS + K+ +++ P + ++W L E T+
Sbjct: 91 SSPLSVKLNIVISPYHLDNSWKALLGELTL 120
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 231 (86.4 bits), Expect = 5.3e-36, Sum P(4) = 5.3e-36
Identities = 60/180 (33%), Positives = 95/180 (52%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ + + L+ RW V+GTP+Q G DLF L+
Sbjct: 802 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCVSGTPVQRGLEDLFGLVV 861
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGL-SRLQVLMSTISLRRTKDKGLIGLQPKTIEK 531
FL EP+ VK +W L+ P + N + L S + +M + + D+ I + P+T E
Sbjct: 862 FLGIEPYCVKHWWIRLLYHPYCKKNPQHLYSFIAKIMWRSAKKDVIDQ--IQIPPQTEEM 919
Query: 532 YYVELSLEERKLYD---EL---EGKAK-GVVQDY-INAGSL-MRNYSTVLSILLRLRQIC 582
+++ S ER Y E+ + K + D+ + SL R S++L LLRLRQ C
Sbjct: 920 HWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVSSILYPLLRLRQAC 979
Score = 173 (66.0 bits), Expect = 5.3e-36, Sum P(4) = 5.3e-36
Identities = 55/203 (27%), Positives = 93/203 (45%)
Query: 641 CAHIFCRSC---ILKTLQ---HTKPC-CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC C I++ H C +CR ++ F+S + + DI +
Sbjct: 1466 CGHCFCNECTSIIIEQYSVGSHRSSIKCAICRQTTSHKEVSYVFTSEKANQEDDIP---V 1522
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + K P K++VFS ++ +L ++ + L ++
Sbjct: 1523 KGSHSTKVEAVVRTLMKIQLKDPGAKALVFSTWQDVLDIISKALTDNNMGFTQISRIKTF 1582
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
++ + +P +LL L G+ + A+ V L+EP NPA E QA+ RVH
Sbjct: 1583 QENLSAFKY--DPQIN---ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1637
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1638 RIGQTKPTIVHRFLIKATIEERM 1660
Score = 95 (38.5 bits), Expect = 5.3e-36, Sum P(4) = 5.3e-36
Identities = 45/163 (27%), Positives = 76/163 (46%)
Query: 123 TRLEMFS-IVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNV 181
+R++ F+ ++K V+ G L +S DV L E +E + E + +DE+++ V +
Sbjct: 226 SRMKKFNQLLKRVM--GKLYSLSIPDV---LEEDE--EESESEPEGQDIDELYQFVKRTH 278
Query: 182 XXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENSEELPP------FWEE--KGGGFV 233
+ L +Q+E + W++++E P W E G +
Sbjct: 279 QQEAKSVQVDVQHPALIPVLRPYQREAVNWMLQQEQFRSTPADNSLHFLWREIVTPDG-L 337
Query: 234 NVLTNYHTDK--RPEP-----LRGGIFADDMGLGKTLTLLSLI 269
N+ N +T R P L GGI AD+MGLGKT+ +L+LI
Sbjct: 338 NLYYNPYTGCIIRDFPHAGPQLLGGILADEMGLGKTVEVLALI 380
Score = 84 (34.6 bits), Expect = 5.3e-36, Sum P(4) = 5.3e-36
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEE---LKMYDLVLTTYSTL 406
+ TLI+ P S+ W+ ++ H L+ +Y G + + L D+V+ TY L
Sbjct: 714 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 773
Query: 407 AIEESWLESP 416
E ++++ P
Sbjct: 774 RSELNYVDIP 783
Score = 37 (18.1 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 598 SNTIE-DVSNNPDLLKKLVEVL 618
S+T DV N LLK++++ L
Sbjct: 462 SSTFRYDVQRNRSLLKRMLKCL 483
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 246 (91.7 bits), Expect = 7.2e-36, Sum P(5) = 7.2e-36
Identities = 76/245 (31%), Positives = 126/245 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD------RTQDVEELKMYDLVLTTYSTL 406
LIV P SV W T+ + P K Y+G + Q +L + + +TTY L
Sbjct: 589 LIVVPTSVMLNWETEFLKWC-PAF-KILTYFGSAKERKLKRQGWMKLNSFHVCITTYR-L 645
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I++S + K+ +W +ILDEAH+IKN +Q+ +T+ N N+KRR ++TGTP+QN +
Sbjct: 646 VIQDSKM---FKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLME 702
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLA---QG----NRKGLSRLQVLMSTISLRRTKDK 519
L+SLM FL F ++ P+A +G N++ + RL ++ LRR K
Sbjct: 703 LWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRD 762
Query: 520 GLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLR 579
L K + LS +R LY++ + Q + +GS + ++SI+++LR
Sbjct: 763 VEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTE--TQATLTSGS----FFGMISIIMQLR 816
Query: 580 QICTN 584
++C +
Sbjct: 817 KVCNH 821
Score = 232 (86.7 bits), Expect = 7.2e-36, Sum P(5) = 7.2e-36
Identities = 49/128 (38%), Positives = 79/128 (61%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
++++F+Q KML +LE + G+ +RLDGS ++R +++ F N P + + S
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRF-NTNPK-IFLFILST 1150
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
++ G G+NL A V + WNPA+++QA DR HRIGQ +V I RLI ++IEE IL+
Sbjct: 1151 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1210
Query: 836 LQDRKKKL 843
++K+ L
Sbjct: 1211 KANQKRVL 1218
Score = 67 (28.6 bits), Expect = 7.2e-36, Sum P(5) = 7.2e-36
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI AD+MGLGKT+ ++L+A C
Sbjct: 557 GILADEMGLGKTIMTIALLAHLAC 580
Score = 47 (21.6 bits), Expect = 7.2e-36, Sum P(5) = 7.2e-36
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 663 LCRHPLLQSDLFSSPPESSDMDIAG 687
+C HP DLF P S D+AG
Sbjct: 818 VCNHP----DLFEGRPIVSSFDMAG 838
Score = 40 (19.1 bits), Expect = 2.7e-16, Sum P(6) = 2.7e-16
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 728 ILLEEP-----LQAAGFKLLRLDGSMNA 750
+LLE P L+A GF LD SM +
Sbjct: 850 LLLESPFSKVDLEALGFLFTHLDFSMTS 877
Score = 38 (18.4 bits), Expect = 2.7e-16, Sum P(6) = 2.7e-16
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 797 WNPAVEEQAMDRVHRIGQKE 816
W+P + E AM+ +KE
Sbjct: 1404 WDPIIVEAAMENEAGFEEKE 1423
Score = 38 (18.4 bits), Expect = 2.7e-16, Sum P(6) = 2.7e-16
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 825 VRNSI-EERILELQDRKKKLA 844
+R ++ EERI E +DR +A
Sbjct: 925 IRKAVFEERIQESKDRAAAIA 945
Score = 38 (18.4 bits), Expect = 2.7e-16, Sum P(6) = 2.7e-16
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 799 PAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREA 847
PA EE ++ +H D++ R ++ S +E ++ D K++A A
Sbjct: 1335 PAKEEMSL--LH-----SDIRDERAVITTSSQEDDTDVLDDVKQMAAAA 1376
Score = 37 (18.1 bits), Expect = 7.2e-36, Sum P(5) = 7.2e-36
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 196 VIKSELFVHQKEGLGWLV 213
++K L +Q GL WLV
Sbjct: 531 LLKHSLREYQHIGLDWLV 548
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 227 (85.0 bits), Expect = 8.7e-36, Sum P(4) = 8.7e-36
Identities = 59/181 (32%), Positives = 94/181 (51%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ + + L+ RW ++GTP+Q G DLF L+
Sbjct: 806 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 865
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL--IGLQPKTIE 530
FL EP+ VK +W L+ RP + N + L ++ I R K + I + P+T E
Sbjct: 866 FLGIEPYCVKHWWVRLLYRPYCKKNPQ---HLYSFIAKILWRSAKKDVIDQIQIPPQTEE 922
Query: 531 KYYVELSLEERKLYD---EL---EGKAK-GVVQDY-INAGSL-MRNYSTVLSILLRLRQI 581
+++ S ER Y E+ + K + D+ + SL R +++L LLRLRQ
Sbjct: 923 IHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQA 982
Query: 582 C 582
C
Sbjct: 983 C 983
Score = 185 (70.2 bits), Expect = 8.7e-36, Sum P(4) = 8.7e-36
Identities = 57/203 (28%), Positives = 95/203 (46%)
Query: 641 CAHIFCRSCILKTLQ------HTKPC-CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC CI ++ H C +CR ++ F+S S + DI +
Sbjct: 1450 CGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKASQEEDIP---V 1506
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + + P K++VFS ++ +L ++ + L + ++
Sbjct: 1507 KGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RV 1563
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
K + + F + P +LL L G+ + A+ V L+EP NPA E QA+ RVH
Sbjct: 1564 KTFQENLSAFKHD-PQ-INILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1621
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1622 RIGQTKPTIVHRFLIKATIEERM 1644
Score = 85 (35.0 bits), Expect = 8.7e-36, Sum P(4) = 8.7e-36
Identities = 30/127 (23%), Positives = 56/127 (44%)
Query: 159 KERKGERGVKSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENS 218
+E + E + +DE+++ V + + L +Q+E + W++++E+
Sbjct: 264 EESESEPEGQEIDELYQFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQEHF 323
Query: 219 EELPP-------FWEE-------K--GGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKT 262
P W E K + + + + P+ L GGI AD+MGLGKT
Sbjct: 324 RSAPTNENALHFLWREIVTPEDLKLYYNPYTGCIIRDYPNAGPQ-LLGGILADEMGLGKT 382
Query: 263 LTLLSLI 269
+ +L+LI
Sbjct: 383 VEVLALI 389
Score = 84 (34.6 bits), Expect = 8.7e-36, Sum P(4) = 8.7e-36
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEE---LKMYDLVLTTYSTL 406
+ TLI+ P S+ W+ ++ H L+ +Y G + + L D+V+ TY L
Sbjct: 718 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 777
Query: 407 AIEESWLESP 416
E ++++ P
Sbjct: 778 RSELNYVDIP 787
Score = 39 (18.8 bits), Expect = 4.6e-31, Sum P(4) = 4.6e-31
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 238 NYHTDKRPEPL 248
N H D+R EPL
Sbjct: 24 NMHEDRRNEPL 34
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 237 (88.5 bits), Expect = 9.3e-36, Sum P(4) = 9.3e-36
Identities = 57/149 (38%), Positives = 82/149 (55%)
Query: 718 VVFSQFRKMLILLEEPL-QAA--GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E+ L QA +RLDGS+ KR + + +F N P VLL +
Sbjct: 1740 LIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNND-PS-IDVLLLT 1797
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK+ V + RLI R +EE+I+
Sbjct: 1798 THVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIM 1857
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDL 863
LQ K +A ++ + TD +
Sbjct: 1858 GLQRFKMNVASTVVNQQNAGLSSIGTDQI 1886
Score = 236 (88.1 bits), Expect = 9.3e-36, Sum P(4) = 9.3e-36
Identities = 69/210 (32%), Positives = 108/210 (51%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEELKMYDLVLTTYSTLAI 408
+LIVCP ++ W Q E T LK Y G +R + ++K D+V+T+Y I
Sbjct: 1421 SLIVCPSTLAGHW--QQELSTYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYD---I 1475
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ ++ VK I+W +LDE HVIKNA A+ ++ V +L + R +++GTPIQN +L+
Sbjct: 1476 CRNDVDELVK-IDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELW 1534
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQGN---------RKGLSRLQVLMSTI---SLRRT 516
SL FL + +Q RP+A +G L+ + + LRR
Sbjct: 1535 SLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRL 1594
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDE 546
K+ L L PK I+ YY ++S +RKL ++
Sbjct: 1595 KEDVLADLPPKIIQDYYCDMSDLQRKLLND 1624
Score = 69 (29.3 bits), Expect = 9.3e-36, Sum P(4) = 9.3e-36
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 251 GIFADDMGLGKTLTLLSLIALD 272
GI DDMGLGKTL + ++A D
Sbjct: 1379 GILCDDMGLGKTLQTICIVASD 1400
Score = 41 (19.5 bits), Expect = 9.3e-36, Sum P(4) = 9.3e-36
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I ++L +Q+EG+ WL
Sbjct: 1354 ISADLRKYQQEGVNWL 1369
Score = 38 (18.4 bits), Expect = 9.9e-13, Sum P(3) = 9.9e-13
Identities = 8/48 (16%), Positives = 25/48 (52%)
Query: 400 LTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNL 447
LT + ++ SW+ ++ + V+L++ I ++ + ++ V ++
Sbjct: 637 LTKFISVQTSCSWITGLTLRLCFQNVLLEQQEDISKSSCELAQRVMDI 684
Score = 37 (18.1 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 213 VRRENSEELPPF 224
V++E +E+LP F
Sbjct: 83 VKKEETEDLPSF 94
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 224 (83.9 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 58/180 (32%), Positives = 95/180 (52%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ + + L+ RW ++GTP+Q G DLF L+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGL-SRLQVLMSTISLRRTKDKGLIGLQPKTIEK 531
FL EP+ V+ +W L+ RP + N L S + +M + + D+ I + P+T E
Sbjct: 869 FLGVEPYCVRHWWVRLLYRPYCKKNPHFLYSFIAKIMWRSAKKDVIDQ--IQIPPQTEET 926
Query: 532 YYVELSLEERKLYD---EL---EGKAK-GVVQDY-INAGSL-MRNYSTVLSILLRLRQIC 582
+++ S ER Y E+ + K + D+ + SL R +++L LLRLRQ C
Sbjct: 927 HWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQAC 986
Score = 183 (69.5 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 57/205 (27%), Positives = 95/205 (46%)
Query: 641 CAHIFCRSCILKTLQ------HTKPC-CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC CI ++ H C +CR ++ F+S S + DI +
Sbjct: 1453 CGHCFCNECISIIIEQYSVGSHRSSIRCAICRQTTSHKEISYVFTSEKASQEEDIP---V 1509
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + + P K++VFS ++ +L ++ + L + ++
Sbjct: 1510 KGSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS----- 1564
Query: 751 KKRAQVIEEFGNPGPGGP--TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDR 808
R + +E + P +LL L G+ + A+ V L+EP NPA E QA+ R
Sbjct: 1565 --RVKTFQENLSAFKYDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGR 1622
Query: 809 VHRIGQKEDVKIVRLIVRNSIEERI 833
VHRIGQ + + R +++ +IEER+
Sbjct: 1623 VHRIGQTKPTIVHRFLIKATIEERM 1647
Score = 89 (36.4 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 31/117 (26%), Positives = 52/117 (44%)
Query: 168 KSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENSEELPP---- 223
+ +DE++ V + + L +Q+E + W++++E+ + P
Sbjct: 276 QDIDELYHFVKQTHQQETRSIQVDVQHPALTPVLRPYQREAVNWMLQQEHFKSTPASENA 335
Query: 224 ---FWEE--KGGG---FVNVLTNYHTDKRPE--P-LRGGIFADDMGLGKTLTLLSLI 269
W E G + N T + P P L GGI AD+MGLGKT+ +L+LI
Sbjct: 336 LHFLWREIVTSEGLKLYYNPYTGCIIREYPNAGPQLLGGILADEMGLGKTVEVLALI 392
Score = 84 (34.6 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEE---LKMYDLVLTTYSTL 406
+ TLI+ P S+ W+ ++ H L+ +Y G + + L D+V+ TY L
Sbjct: 721 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 780
Query: 407 AIEESWLESP 416
E ++++ P
Sbjct: 781 RSELNYVDIP 790
Score = 39 (18.8 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 238 NYHTDKRPEPL 248
N H D+R EPL
Sbjct: 24 NMHEDRRNEPL 34
Score = 37 (18.1 bits), Expect = 2.4e-16, Sum P(4) = 2.4e-16
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 474 LQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPK 527
LQ + S +W ++IQR + G + L+ Q + + I+ + G + + K
Sbjct: 1136 LQRKIHSNSPWWLNVIQRAIEFGIEEELA--QRVRNEITSNYKQQTGKLSMSEK 1187
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 232 (86.7 bits), Expect = 1.6e-35, Sum P(4) = 1.6e-35
Identities = 60/181 (33%), Positives = 94/181 (51%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ + + L+ RW ++GTP+Q G DLF L+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL--IGLQPKTIE 530
FL EP+ VK +W L+ RP + N + L ++ I R K + I + P+T E
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNPQ---HLYSFIAKILWRSAKKDVIDQIQIPPQTEE 920
Query: 531 KYYVELSLEERKLYD-ELEGKAKGVV------QDY-INAGSL-MRNYSTVLSILLRLRQI 581
+++ S ER Y + E + VV D+ + SL R +++L LLRLRQ
Sbjct: 921 IHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQA 980
Query: 582 C 582
C
Sbjct: 981 C 981
Score = 181 (68.8 bits), Expect = 1.6e-35, Sum P(4) = 1.6e-35
Identities = 54/203 (26%), Positives = 94/203 (46%)
Query: 641 CAHIFCRSCILKTLQ------HTKPC-CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC CI ++ H C +CR ++ F+S + + DI +
Sbjct: 1448 CGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKANQEEDIP---V 1504
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + + P K++VFS ++ +L ++ + L + ++
Sbjct: 1505 KGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF 1564
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
++ + +P +LL L G+ + A+ V L+EP NPA E QA+ RVH
Sbjct: 1565 QENLSAFKR--DPQIN---ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1619
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1620 RIGQTKPTIVHRFLIKATIEERM 1642
Score = 84 (34.6 bits), Expect = 1.6e-35, Sum P(4) = 1.6e-35
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEE---LKMYDLVLTTYSTL 406
+ TLI+ P S+ W+ ++ H L+ +Y G + + L D+V+ TY L
Sbjct: 716 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 775
Query: 407 AIEESWLESP 416
E ++++ P
Sbjct: 776 RSELNYVDIP 785
Score = 81 (33.6 bits), Expect = 1.6e-35, Sum P(4) = 1.6e-35
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 168 KSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENSEELPP---- 223
+ +DE++ V + + L +Q+E + W++++E P
Sbjct: 271 QDIDELYHFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESA 330
Query: 224 ---FWEE--KGGG---FVNVLTNYHTDKRPE--P-LRGGIFADDMGLGKTLTLLSLI 269
W E G + N T + P P L GGI AD+MGLGKT+ +L+LI
Sbjct: 331 LHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALI 387
Score = 41 (19.5 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 238 NYHTDKRPEPLRGGIFADD 256
N H D+R EP+ I +DD
Sbjct: 24 NMHEDRRNEPI---IISDD 39
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 232 (86.7 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 60/181 (33%), Positives = 94/181 (51%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ + + L+ RW ++GTP+Q G DLF L+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGL--IGLQPKTIE 530
FL EP+ VK +W L+ RP + N + L ++ I R K + I + P+T E
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNPQ---HLYSFIAKILWRSAKKDVIDQIQIPPQTEE 920
Query: 531 KYYVELSLEERKLYD-ELEGKAKGVV------QDY-INAGSL-MRNYSTVLSILLRLRQI 581
+++ S ER Y + E + VV D+ + SL R +++L LLRLRQ
Sbjct: 921 IHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQA 980
Query: 582 C 582
C
Sbjct: 981 C 981
Score = 181 (68.8 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 54/203 (26%), Positives = 94/203 (46%)
Query: 641 CAHIFCRSCILKTLQ------HTKPC-CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC CI ++ H C +CR ++ F+S + + DI +
Sbjct: 1452 CGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKANQEEDIP---V 1508
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + + P K++VFS ++ +L ++ + L + ++
Sbjct: 1509 KGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF 1568
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
++ + +P +LL L G+ + A+ V L+EP NPA E QA+ RVH
Sbjct: 1569 QENLSAFKR--DPQIN---ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1623
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1624 RIGQTKPTIVHRFLIKATIEERM 1646
Score = 84 (34.6 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEE---LKMYDLVLTTYSTL 406
+ TLI+ P S+ W+ ++ H L+ +Y G + + L D+V+ TY L
Sbjct: 716 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 775
Query: 407 AIEESWLESP 416
E ++++ P
Sbjct: 776 RSELNYVDIP 785
Score = 81 (33.6 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 168 KSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENSEELPP---- 223
+ +DE++ V + + L +Q+E + W++++E P
Sbjct: 271 QDIDELYHFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESA 330
Query: 224 ---FWEE--KGGG---FVNVLTNYHTDKRPE--P-LRGGIFADDMGLGKTLTLLSLI 269
W E G + N T + P P L GGI AD+MGLGKT+ +L+LI
Sbjct: 331 LHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALI 387
Score = 41 (19.5 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 238 NYHTDKRPEPLRGGIFADD 256
N H D+R EP+ I +DD
Sbjct: 24 NMHEDRRNEPI---IISDD 39
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 235 (87.8 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 73/257 (28%), Positives = 132/257 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVE---ELKMYDLVLTTYSTL 406
LIV P SV W + + PG LK + Y+G DR + + + + + +T+YS +
Sbjct: 834 LIVVPSSVLFNWEMEFKRWC-PG-LKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYS-M 890
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ + + ++ +W +ILDEAHVIKN Q+ + + + N +RR ++TGTP+QN +
Sbjct: 891 VMSDHLI---FRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLME 947
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLA---QG----NRKGLSRLQVLMSTISLRRTKDK 519
L+SLM FL + F +Q P+ +G N ++RL ++ LRR K
Sbjct: 948 LWSLMHFLMPDIFQSHREFQDWFSNPVTGMIEGGDDVNEDIINRLHAVLRPFLLRRLKKD 1007
Query: 520 GLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLR 579
+ PK +S ++ LY+E + Q +++GS + ++++IL++LR
Sbjct: 1008 VEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSS--TQSTLSSGS----FFSIINILMQLR 1061
Query: 580 QICTNLALCPSDVRSII 596
++C + L ++R I+
Sbjct: 1062 KVCNHPDLF--EIRPIV 1076
Score = 233 (87.1 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 53/135 (39%), Positives = 80/135 (59%)
Query: 709 RDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
R K+ ++++F+Q KML + E L + LRLDGS KR QV+ E N P
Sbjct: 1390 RLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKR-QVLTERFNTDPK-I 1447
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ + S ++ G G+NLT A V + WNP+++ QA DR HRIGQ +V I R I +++
Sbjct: 1448 FLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRFITQHT 1507
Query: 829 IEERILELQDRKKKL 843
IEE IL+ ++K++L
Sbjct: 1508 IEENILKKSNQKRQL 1522
Score = 71 (30.1 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ +SLIA
Sbjct: 802 GILADEMGLGKTIMTISLIA 821
Score = 67 (28.6 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 20/99 (20%), Positives = 46/99 (46%)
Query: 746 GSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQA 805
G +K+ ++ + G G GG + +S +G+ + + + + P W+ ++
Sbjct: 2308 GRKRDRKKQRLSKSNGGVGGGGSDLESPISSSSISGIFINSDLILNHMGPPWSQQEDKLI 2367
Query: 806 MDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLA 844
+D V G+ D ++ I++NS RI + K +++
Sbjct: 2368 LDNVKNFGENWD--LITFIIQNSNYSRINRVTRSKSQIS 2404
Score = 39 (18.8 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 590 SDVRSIIPSNTIEDVSNNPDLL 611
SD+ S I S++I + N DL+
Sbjct: 2330 SDLESPISSSSISGIFINSDLI 2351
Score = 38 (18.4 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 802 EEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTD 861
E++ + R Q+++ +I I + E+ E ++ K+K E + K KDQ +
Sbjct: 1758 EKEKDNEKEREKQEKENEIE--IEKEKGNEKENEKENEKEK-ENERDKDKDKDQDQDKDQ 1814
Query: 862 DLRIL 866
+++I+
Sbjct: 1815 EMKII 1819
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 245 (91.3 bits), Expect = 2.1e-35, Sum P(4) = 2.1e-35
Identities = 59/155 (38%), Positives = 84/155 (54%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E L Q LRLDGS+ A +R ++ F N P VLL +
Sbjct: 1642 LIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVSRFNND-PS-IDVLLLT 1699
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK V + RLI R ++EE+I+
Sbjct: 1700 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1759
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + T+ L L +L
Sbjct: 1760 GLQKFKMNIANTVISQENASLQSMGTEQLLDLFTL 1794
Score = 214 (80.4 bits), Expect = 2.1e-35, Sum P(4) = 2.1e-35
Identities = 64/230 (27%), Positives = 115/230 (50%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ ++K ++L++ +Y +
Sbjct: 1322 SLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERARLQYQVKRHNLIVASYDVVRN 1381
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 1382 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 1437
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQVLMSTIS------------LRR 515
SL FL + + + +P LA + + SR Q + ++ LRR
Sbjct: 1438 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAVGVLAMEALHRQVLPFLLRR 1497
Query: 516 TKDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGSL 564
K+ L L PK I+ YY LS + +LY++ + +AK + + +++ SL
Sbjct: 1498 MKEDVLQDLPPKIIQDYYCVLSPLQVQLYEDFAKSRAKCDIDETVSSISL 1547
Score = 73 (30.8 bits), Expect = 2.1e-35, Sum P(4) = 2.1e-35
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI DDMGLGKTL + ++A D C
Sbjct: 1280 GILCDDMGLGKTLQSICILAGDHC 1303
Score = 50 (22.7 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 563 SLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDL 610
+L++NY V S + +L Q CT + CP+ S I N + +P L
Sbjct: 884 TLVQNY--VASCIAKLLQQCTTRSPCPN---SKIIKNLCNSLCVDPHL 926
Score = 46 (21.3 bits), Expect = 2.1e-35, Sum P(4) = 2.1e-35
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
IK+EL +Q++G+ WL
Sbjct: 1255 IKAELRKYQQDGVNWL 1270
Score = 41 (19.5 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYIN 560
+R K ++ QP T K VE + EE + LE + V D N
Sbjct: 244 KRRKVANVVINQPATDSKTLVENASEEANEWP-LESFCEEVCNDLFN 289
Score = 39 (18.8 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 553 GVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLK 612
GVV ++N + + +L +L + + + L + + I+ + P +L
Sbjct: 369 GVVLKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVRQDMIDTLL--PKVLP 426
Query: 613 KLVEVLQDGED 623
+VE LQD +D
Sbjct: 427 AIVEGLQDLDD 437
Score = 37 (18.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 524 LQPKTIEKYYVELSLEERKLYD-----ELEGKAKGVVQDYINAGSLMRNY 568
+Q K E++++E L+ +KL + ++ + + QD +N + + Y
Sbjct: 1227 IQMKAKERHFLEQLLDGKKLENYKIPVPIKAELRKYQQDGVNWLAFLNKY 1276
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 250 (93.1 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 62/194 (31%), Positives = 95/194 (48%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L L + CC HP L PP ++DM + + K K+
Sbjct: 167 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKL------- 216
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K+ ++ ++FSQ ++L +LE+ ++ RLDG +R I + P
Sbjct: 217 -KEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPN-STKF 274
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V + S +A G G+NL A V L + WNP V+ QAMDR HRIGQ + V++ R I N++
Sbjct: 275 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 334
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 335 EERIVERAEMKLRL 348
Score = 218 (81.8 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 61/189 (32%), Positives = 100/189 (52%)
Query: 396 YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVV 455
+D+ +T+Y L I+E +S KK W +++DEAH IKN ++ S V R ++
Sbjct: 1 WDVCVTSYEML-IKE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLL 56
Query: 456 TGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRR 515
TGTP+QN +L+SL+ FL + F+ + S G++K + RL +++ LRR
Sbjct: 57 TGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDKKLVERLHMVLRPFLLRR 116
Query: 516 TKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL 575
K L PK K YV LS +R+ Y + K + D +N+ M + +L+IL
Sbjct: 117 IKADVEKSLPPKKEVKIYVGLSKMQREWYTRI--LMKDI--DILNSAGKM-DKMRLLNIL 171
Query: 576 LRLRQICTN 584
++LR+ C +
Sbjct: 172 MQLRKCCNH 180
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 240 (89.5 bits), Expect = 4.6e-35, Sum P(4) = 4.6e-35
Identities = 58/155 (37%), Positives = 82/155 (52%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E L LRLDGS+ +R ++ F N P VLL +
Sbjct: 1649 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PS-IDVLLLT 1706
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK V + RLI R ++EE+I+
Sbjct: 1707 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1766
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + TD L L +L
Sbjct: 1767 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1801
Score = 221 (82.9 bits), Expect = 4.6e-35, Sum P(4) = 4.6e-35
Identities = 68/229 (29%), Positives = 117/229 (51%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ V ++K ++L++ +Y +
Sbjct: 1330 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERVRLQHQVKRHNLIVASYDVVRN 1389
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 1390 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 1445
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQ---VL-MSTIS-------LRRT 516
SL FL + + + +P LA + + SR Q VL M + LRR
Sbjct: 1446 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRM 1505
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGSL 564
K+ L L PK I+ YY LS + +LY++ + +AK V + +++ +L
Sbjct: 1506 KEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAAL 1554
Score = 73 (30.8 bits), Expect = 4.6e-35, Sum P(4) = 4.6e-35
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI DDMGLGKTL + ++A D C
Sbjct: 1288 GILCDDMGLGKTLQSICILAGDHC 1311
Score = 43 (20.2 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 602 EDVSNN--PDLLKKLVEVLQDGED 623
+DV N P +L +++E LQD +D
Sbjct: 421 QDVINTLLPKVLTRIIEGLQDLDD 444
Score = 41 (19.5 bits), Expect = 4.6e-35, Sum P(4) = 4.6e-35
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I +EL +Q++G+ WL
Sbjct: 1263 INAELRKYQQDGVNWL 1278
Score = 39 (18.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 501 LSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKL--YD---ELEGKAKGVV 555
L RL L + I + LI L+ K E++++E L+ +KL Y+ + + +
Sbjct: 1214 LIRLMPLEAGIPDPPNMSEELIQLKAK--ERHFLEQLLDGKKLENYEIPVPINAELRKYQ 1271
Query: 556 QDYINAGSLMRNY 568
QD +N + + Y
Sbjct: 1272 QDGVNWLAFLNKY 1284
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 240 (89.5 bits), Expect = 5.0e-35, Sum P(4) = 5.0e-35
Identities = 58/155 (37%), Positives = 82/155 (52%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E L LRLDGS+ +R ++ F N P VLL +
Sbjct: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PS-IDVLLLT 1705
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK V + RLI R ++EE+I+
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + TD L L +L
Sbjct: 1766 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1800
Score = 221 (82.9 bits), Expect = 5.0e-35, Sum P(4) = 5.0e-35
Identities = 67/229 (29%), Positives = 117/229 (51%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ + ++K ++L++ +Y +
Sbjct: 1329 SLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRN 1388
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 1389 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 1444
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQ---VL-MSTIS-------LRRT 516
SL FL + + + +P LA + + SR Q VL M + LRR
Sbjct: 1445 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRM 1504
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGSL 564
K+ L L PK I+ YY LS + +LY++ + +AK V + +++ +L
Sbjct: 1505 KEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAAL 1553
Score = 73 (30.8 bits), Expect = 5.0e-35, Sum P(4) = 5.0e-35
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI DDMGLGKTL + ++A D C
Sbjct: 1287 GILCDDMGLGKTLQSICILAGDHC 1310
Score = 43 (20.2 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 602 EDVSNN--PDLLKKLVEVLQDGED 623
+DV N P +L +++E LQD +D
Sbjct: 421 QDVINTLLPKVLTRIIEGLQDLDD 444
Score = 41 (19.5 bits), Expect = 5.0e-35, Sum P(4) = 5.0e-35
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I +EL +Q++G+ WL
Sbjct: 1262 INAELRKYQQDGVNWL 1277
Score = 40 (19.1 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 19/91 (20%), Positives = 41/91 (45%)
Query: 486 QSLIQRPLAQGNRKG-LSRLQVLM---STISLRRTKDKGLIGLQPKTIE-----KYYVEL 536
+SL Q L N K L R+ V + +L++ + +QP+ ++ YY E+
Sbjct: 708 ESLGQLLLFHLNSKSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEI 767
Query: 537 SLEERKLYDELEGKAKGVVQDYINAGSLMRN 567
++ ++ +E + + +I G+ + N
Sbjct: 768 AVPFTRMQNECKQLISSLADAHIEVGNRVNN 798
Score = 37 (18.1 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 471 MAFLQFE--PFSVKSYWQSLIQ 490
+ +LQ + PF + + W +L++
Sbjct: 461 LVYLQTQKVPFIINTLWDALLE 482
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 229 (85.7 bits), Expect = 5.4e-35, Sum P(4) = 5.4e-35
Identities = 59/180 (32%), Positives = 95/180 (52%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ SP+ +EWWR+ LDEA +++ + + L+ RW ++GTP+Q G DLF L+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGL-SRLQVLMSTISLRRTKDKGLIGLQPKTIEK 531
FL EP+ VK +W L+ P + N + L S + +M + + D+ I + P+T E
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNPQHLYSFIAKIMWRSAKKDVIDQ--IQIPPQTEEM 912
Query: 532 YYVELSLEERKLYD---EL---EGKAK-GVVQDY-INAGSL-MRNYSTVLSILLRLRQIC 582
+++ S ER Y E+ + K + D+ + SL R S++L LLRLRQ C
Sbjct: 913 HWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLRLRQAC 972
Score = 173 (66.0 bits), Expect = 5.4e-35, Sum P(4) = 5.4e-35
Identities = 54/203 (26%), Positives = 94/203 (46%)
Query: 641 CAHIFCRSC---ILKTLQ---HTKPC-CPLCRHPLLQSDL---FSSPPESSDMDIAGKTL 690
C H FC C I++ H C +CR ++ F+S + + DI +
Sbjct: 1439 CGHCFCNECTSIIIEQYSVGSHRSSIKCAICRQTTSHKEVSYVFTSEKANQEDDIP---V 1495
Query: 691 KNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
K S+KV A + + P K++VFS ++ +L ++ + L + ++
Sbjct: 1496 KGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFTQISRIKTF 1555
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
++ + +P +LL L G+ + A+ V L+EP NPA E QA+ RVH
Sbjct: 1556 QENLSAFKY--DPHIN---ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1610
Query: 811 RIGQKEDVKIVRLIVRNSIEERI 833
RIGQ + + R +++ +IEER+
Sbjct: 1611 RIGQTKPTIVHRFLIKATIEERM 1633
Score = 89 (36.4 bits), Expect = 5.4e-35, Sum P(4) = 5.4e-35
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 168 KSVDEIFKLVDKNVXXXXXXXXXXXXXXVIKSELFVHQKEGLGWLVRRENSEELPP---- 223
+ +DE++ V + + L +Q+E + W++++E PP
Sbjct: 266 QDIDELYHFVKQTHQQETRSVQVDVQHPALIPVLRPYQREAVNWMLQQEQFRSAPPADNS 325
Query: 224 ---FWEE--KGGG---FVNVLTNYHTDKRPE--P-LRGGIFADDMGLGKTLTLLSLI 269
W E G + N T P P L GGI AD+MGLGKT+ +L+LI
Sbjct: 326 LHFLWREIVTPDGLKLYYNPYTGCIIRDFPHAGPQLLGGILADEMGLGKTVEVLALI 382
Score = 82 (33.9 bits), Expect = 5.4e-35, Sum P(4) = 5.4e-35
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEE---LKMYDLVLTTYSTL 406
+ TLI+ P S+ W+ ++ H L+ +Y G + + L D+V+ TY L
Sbjct: 707 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVL 766
Query: 407 AIEESWLESP 416
E +++ P
Sbjct: 767 RSELNYVNIP 776
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 240 (89.5 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 58/155 (37%), Positives = 82/155 (52%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E L LRLDGS+ +R ++ F N P VLL +
Sbjct: 1647 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PS-IDVLLLT 1704
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK V + RLI R ++EE+I+
Sbjct: 1705 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1764
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + TD L L +L
Sbjct: 1765 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1799
Score = 220 (82.5 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 67/229 (29%), Positives = 117/229 (51%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ + ++K ++L++ +Y +
Sbjct: 1328 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRN 1387
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 1388 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 1443
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQ---VL-MSTIS-------LRRT 516
SL FL + + + +P LA + + SR Q VL M + LRR
Sbjct: 1444 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRM 1503
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGSL 564
K+ L L PK I+ YY LS + +LY++ + +AK V + +++ +L
Sbjct: 1504 KEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAAL 1552
Score = 73 (30.8 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI DDMGLGKTL + ++A D C
Sbjct: 1286 GILCDDMGLGKTLQSICILAGDHC 1309
Score = 43 (20.2 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 602 EDVSNN--PDLLKKLVEVLQDGED 623
+DV N P +L +++E LQD +D
Sbjct: 420 QDVINTLLPKVLTRIIEGLQDLDD 443
Score = 41 (19.5 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I +EL +Q++G+ WL
Sbjct: 1261 INAELRKYQQDGVNWL 1276
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 486 QSLIQRPLAQGNRKG-LSRLQ---VLMSTISLRRTKDKGLIGLQPKTIE-----KYYVEL 536
+SL Q L N K L R+ V+ +L++ + +QP+ ++ YY E+
Sbjct: 707 ESLGQLLLFHLNSKSALQRISAALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEI 766
Query: 537 SLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
++ ++ +E + + +I G+ + N VL+I
Sbjct: 767 AVPFTRMQNECKQFISSLADAHIEVGNRVNN--NVLTI 802
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 240 (89.5 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 58/155 (37%), Positives = 82/155 (52%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E L LRLDGS+ +R ++ F N P VLL +
Sbjct: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PS-IDVLLLT 1705
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQK V + RLI R ++EE+I+
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + TD L L +L
Sbjct: 1766 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1800
Score = 220 (82.5 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 67/229 (29%), Positives = 117/229 (51%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ + ++K ++L++ +Y +
Sbjct: 1329 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRN 1388
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 1389 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 1444
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQ---VL-MSTIS-------LRRT 516
SL FL + + + +P LA + + SR Q VL M + LRR
Sbjct: 1445 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRM 1504
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGSL 564
K+ L L PK I+ YY LS + +LY++ + +AK V + +++ +L
Sbjct: 1505 KEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATL 1553
Score = 73 (30.8 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI DDMGLGKTL + ++A D C
Sbjct: 1287 GILCDDMGLGKTLQSICILAGDHC 1310
Score = 43 (20.2 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 602 EDVSNN--PDLLKKLVEVLQDGED 623
+DV N P +L +++E LQD +D
Sbjct: 421 QDVINTLLPKVLTRIIEGLQDLDD 444
Score = 41 (19.5 bits), Expect = 5.8e-35, Sum P(4) = 5.8e-35
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I +EL +Q++G+ WL
Sbjct: 1262 INAELRKYQQDGVNWL 1277
Score = 41 (19.5 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 486 QSLIQRPLAQGNRKG-LSRLQVLM---STISLRRTKDKGLIGLQPKTIE-----KYYVEL 536
+SL Q L N K L R+ V + +L++ + +QP+ ++ YY E+
Sbjct: 708 ESLGQLLLFHLNSKSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEI 767
Query: 537 SLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
++ ++ +E + + +I G+ + N VL+I
Sbjct: 768 AVPFTRMQNECKQLISSLADVHIEVGNRVNN--NVLTI 803
Score = 37 (18.1 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 471 MAFLQFE--PFSVKSYWQSLIQ 490
+ +LQ + PF + + W +L++
Sbjct: 461 LVYLQTQKVPFIINTLWDALLE 482
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 234 (87.4 bits), Expect = 9.3e-35, Sum P(4) = 9.3e-35
Identities = 48/128 (37%), Positives = 79/128 (61%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
++++F+Q K+L +LE+ L G++ +RLDG+ + R + E+F N P P +L S
Sbjct: 1384 RALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKF-NRDPKIPVFIL-ST 1441
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
++ G G+NLT A V + WNPA+++Q DR HRIGQ DV I R + +IE I++
Sbjct: 1442 RSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIK 1501
Query: 836 LQDRKKKL 843
++K++L
Sbjct: 1502 KANQKRQL 1509
Score = 175 (66.7 bits), Expect = 9.3e-35, Sum P(4) = 9.3e-35
Identities = 43/128 (33%), Positives = 69/128 (53%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK------MYDLVLTTYSTL 406
LI+ P SV W + ++ PG K YYG Q ++ K + + +T+Y L
Sbjct: 876 LIIVPTSVMLNWEMEFKKFA-PGF-KVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQ-L 932
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ + K+ W +ILDEAH IKN + + R + N N + R ++TGTP+QN +
Sbjct: 933 VVQD---QQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLME 989
Query: 467 LFSLMAFL 474
L+SL+ FL
Sbjct: 990 LWSLLYFL 997
Score = 89 (36.4 bits), Expect = 9.3e-35, Sum P(4) = 9.3e-35
Identities = 30/102 (29%), Positives = 54/102 (52%)
Query: 498 RKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKY-YVELSLEERKLYDELEGKAKGVVQ 556
R ++RL ++ LRR K K + P E Y LS +R LYD+ +AK +
Sbjct: 1055 RNTVARLHQVLRPYLLRRLK-KDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRAK--TK 1111
Query: 557 DYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPS 598
+ + +G N+ ++++ L++LR++C + L +VR I+ S
Sbjct: 1112 ETLASG----NFLSIINCLMQLRKVCNHPDLF--EVRPIVTS 1147
Score = 72 (30.4 bits), Expect = 9.3e-35, Sum P(4) = 9.3e-35
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI AD+MGLGKT+ +SL+A C
Sbjct: 844 GILADEMGLGKTIQTISLLAYLAC 867
Score = 46 (21.3 bits), Expect = 4.4e-32, Sum P(4) = 4.4e-32
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGG 231
+++ L +QK+GL WL N+ +E G G
Sbjct: 818 LLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLG 853
Score = 39 (18.8 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 535 ELSLEERKLYDELEGKAKGVVQDYINAGSL 564
E S EE+KL ++L ++ + +++ S+
Sbjct: 676 EYSAEEKKLIEDLNQESDSRMNSLLDSDSV 705
Score = 38 (18.4 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 466 DLFSLMAFL-QFE-PFSVKSYWQSLIQRPLAQGNRKGLSRLQVL 507
DLF + + F P S+ SY+QS + Q N+ Q L
Sbjct: 1137 DLFEVRPIVTSFAMPRSIPSYYQSTNELVKRQFNKDETVSFQAL 1180
Score = 37 (18.1 bits), Expect = 3.9e-16, Sum P(3) = 3.9e-16
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 454 VVTGTPIQNGSFDL-FSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRK 499
++T P Q+ L L+ F +P + SY+Q L + A+ K
Sbjct: 1201 LMTTEPFQDQINKLKILLVEFENSDPINYVSYYQRLRREEQAEIKEK 1247
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 258 (95.9 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 72/196 (36%), Positives = 110/196 (56%)
Query: 679 ESSDMD----IAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPL 734
+SS +D ++ +TL S K++ RD+ T +VFSQ R++L +LE L
Sbjct: 420 DSSGVDHIDQVSDETLME-ESGKMTFLMDLLKRLRDEGHQT--LVFSQSRQILNILERLL 476
Query: 735 QAAGFKLLRLDGSM-NAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLL 793
+ FK+LR+DG++ + +R + I F +V L + + G G+ LTAASRV +
Sbjct: 477 KNRHFKILRIDGTITHLVEREKRISLFQQNKDY--SVFLLTTQVGGVGLTLTAASRVVIF 534
Query: 794 EPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGK 853
+P WNPA + QA+DRV+RIGQKE+V + RLI ++EE+I Q K L R+ K
Sbjct: 535 DPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKN 594
Query: 854 DQREVSTDDLRILMSL 869
R S +LR L ++
Sbjct: 595 PFRYFSKQELRELFTI 610
Score = 176 (67.0 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 67/233 (28%), Positives = 112/233 (48%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM-LKTYM--Y 382
DD GK+V ++ S + L++ P S+ STW+ + + T PGM +KT+
Sbjct: 100 DDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTSLISTWLREFVKWT-PGMRVKTFHGPS 158
Query: 383 YGDRTQDVEELKMYD-LVLTTYSTLAIEESWLES-PVKKIEWWRVILDEAHVIKNANAQQ 440
+RT+++ ++ + +++TTY L L S ++ W VILDEAH IK ++ +
Sbjct: 159 KDERTRNLSRIQQRNGVIITTYQMLINNWQQLSSLNGREFVWDYVILDEAHKIKTSSTKS 218
Query: 441 SRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFL-QFEPFSVKSYWQSLIQRPLAQGNRK 499
+ + A+ R ++TGTPIQN +L+SL F Q ++ + P+ + K
Sbjct: 219 AICARAIPARNRILLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREK 278
Query: 500 ---------GLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEE 540
G + LM+ I LRRTK++ +Q K V LS E+
Sbjct: 279 DATPGEKALGFKISENLMAIIKPYFLRRTKEE----VQKKKSSNPEVRLSEED 327
Score = 83 (34.3 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 210 GWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
G L+ RE +L F +K G V L + + D R RGGI ADDMGLGKT+ +++ +
Sbjct: 63 GLLLYRELHNQL--FEYQKEG--VAFLYSLYRDGR----RGGILADDMGLGKTVQIIAFL 114
Query: 270 A 270
+
Sbjct: 115 S 115
Score = 51 (23.0 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 597 PSNTIEDVSNNPDLLKKLVEVLQDG 621
P N I S NP+L +++++ DG
Sbjct: 872 PVNPITKESQNPELSVSVIQIVDDG 896
Score = 41 (19.5 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
+ ++LF +QKEG+ +L
Sbjct: 70 LHNQLFEYQKEGVAFL 85
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 235 (87.8 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 56/178 (31%), Positives = 94/178 (52%)
Query: 666 HPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRK 725
HP L PP ++D + + S K++ +++ ++ ++FSQ +
Sbjct: 407 HPYLFDGAEPGPPYTTDTHLV------YNSGKMAILDKLLPKLQEQG--SRVLIFSQMTR 458
Query: 726 MLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLT 785
ML +LE+ + RLDG + R + I+EF N + + S +A G G+NL
Sbjct: 459 MLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEF-NMDNSAKFLFMLSTRAGGLGINLA 517
Query: 786 AASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKL 843
A V + + WNP ++ QAMDR HRIGQK+ V++ RLI +++EE+I+E + K +L
Sbjct: 518 TADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRL 575
Score = 212 (79.7 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 66/238 (27%), Positives = 120/238 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDR-TQD--VEELKM---YDLVLTTYSTL 406
+++ P S W+ + ++ P L+ GD+ T++ + ++ M +D+ +T+Y +
Sbjct: 181 IVIVPKSTLQNWVNEFKKWC-PS-LRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYE-M 237
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
I E +S KK W +++DEAH IKN ++ S + R ++TGTP+QN +
Sbjct: 238 CIRE---KSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHE 294
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L++L+ FL + F+ + G+ ++RL ++ LRR K + L+P
Sbjct: 295 LWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKP 354
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K K +V LS +R Y ++ K VV AG + + + +IL++LR+ CTN
Sbjct: 355 KKEMKIFVGLSKMQRDWYTKVLLKDIDVVN---GAGKVEK--MRLQNILMQLRK-CTN 406
Score = 67 (28.6 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKTL +SL+
Sbjct: 149 GILADEMGLGKTLQTISLL 167
Score = 49 (22.3 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 796 WWNPAVEEQAMDRVHRIGQKE--DVKIVR-LIVRNSIEERILELQDRKKKLAREAFRRKG 852
+W E Q ++R+ +GQ E + KI R L ++ ++++++ + +L + KG
Sbjct: 842 FWERCTELQDIERI--MGQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKG 899
Query: 853 KDQREV 858
K+ E+
Sbjct: 900 KNYTEI 905
Score = 38 (18.4 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 820 IVRLIVRNSIEERILELQDRKKK 842
++ LI R +IE E ++KKK
Sbjct: 959 LITLIERENIELEEKERAEKKKK 981
Score = 37 (18.1 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L E+ + G+L M G Q + L
Sbjct: 138 WMISLYENGINGILADEMGLGKTLQTISLL 167
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 234 (87.4 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 57/155 (36%), Positives = 82/155 (52%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F Q + ML ++E L LRLDGS+ +R ++ F N P VLL +
Sbjct: 1644 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNND-PS-IDVLLLT 1701
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V +E WNP + QAMDR HRIGQ + V + RLI R ++EE+I+
Sbjct: 1702 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQVKVVNVYRLITRGTLEEKIM 1761
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
LQ K +A ++ + + TD L L +L
Sbjct: 1762 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1796
Score = 221 (82.9 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 68/229 (29%), Positives = 117/229 (51%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ + ++K ++LV+ +Y +
Sbjct: 1325 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLVVASYDVVRN 1384
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 1385 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 1440
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRP-LAQGNRKGLSRLQ---VL-MSTIS-------LRRT 516
SL FL + + + +P LA + + SR Q VL M + LRR
Sbjct: 1441 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRM 1500
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDEL-EGKAKGVVQDYINAGSL 564
K+ L L PK I+ YY LS + +LY++ + +AK V + +++ +L
Sbjct: 1501 KEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAAL 1549
Score = 73 (30.8 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI DDMGLGKTL + ++A D C
Sbjct: 1283 GILCDDMGLGKTLQSICILAGDHC 1306
Score = 43 (20.2 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 602 EDVSNN--PDLLKKLVEVLQDGED 623
+DV N P +L +++E LQD +D
Sbjct: 421 QDVINTLLPKVLTRIIEGLQDLDD 444
Score = 41 (19.5 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I +EL +Q++G+ WL
Sbjct: 1258 INAELRKYQQDGVNWL 1273
Score = 41 (19.5 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
Identities = 19/91 (20%), Positives = 41/91 (45%)
Query: 486 QSLIQRPLAQGNRKG-LSRLQVLM---STISLRRTKDKGLIGLQPKTIEK-----YYVEL 536
+SL Q L N K L R+ V + +L++ + +QP+ ++ YY E+
Sbjct: 703 ESLGQLLLFHLNSKSALQRISVALVICEWAALQKECRAVTLAVQPRLLDTLSEHLYYDEI 762
Query: 537 SLEERKLYDELEGKAKGVVQDYINAGSLMRN 567
++ ++ +E + + +I G+ + N
Sbjct: 763 AIPFTRMQNECKQLISSLADAHIEVGNRVNN 793
Score = 37 (18.1 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 471 MAFLQFE--PFSVKSYWQSLIQ 490
+ +LQ + PF + + W +L++
Sbjct: 461 LVYLQTQKVPFIINTLWDALLE 482
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 233 (87.1 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 53/137 (38%), Positives = 77/137 (56%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
+ ++F+Q KML +L+ L G++ RLDG+ ++R ++E F N P +L S
Sbjct: 1206 RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERF-NADPKVFCFIL-ST 1263
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
++ G GVNLT A V + WNP ++ QA DR HRIGQ +V I RLI +IEE IL
Sbjct: 1264 RSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILR 1323
Query: 836 LQDRKKKLAREAFRRKG 852
+K++L A G
Sbjct: 1324 KATQKRRLGELAIDEAG 1340
Score = 231 (86.4 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 80/280 (28%), Positives = 139/280 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK------MYDLVLTTYSTL 406
LIV P SV W + ++ P LK Y+G + E+ K + + +T+Y T+
Sbjct: 611 LIVVPTSVILNWEMEFKKWC-PA-LKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTV 668
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ + + K+ W +ILDEA IKN +Q+ + + N+ A+RR ++TGTP+QN +
Sbjct: 669 TQD---IRA-FKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLME 724
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLA---QGNRKG----LSRLQVLMSTISLRRTKDK 519
L+SLM FL FS ++ PL +GN + + RL ++ LRR K +
Sbjct: 725 LWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPFILRRLKKE 784
Query: 520 GLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLR 579
L KT LS +R LYD+ + ++ + +G++M +VL+I+++LR
Sbjct: 785 VEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRS--TKENLKSGNMM----SVLNIVMQLR 838
Query: 580 QICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQ 619
+ C + L + R ++ +E + D+ +L E+ Q
Sbjct: 839 KCCNHPNLF--EPRPVVAPFVVEKLQL--DVPARLFEISQ 874
Score = 72 (30.4 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCA 275
GI AD+MGLGKT+ +SL+A C+
Sbjct: 579 GILADEMGLGKTIQTISLLAHMACS 603
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 196 VIKSELFVHQKEGLGWLV 213
+I+ +L +Q GL W+V
Sbjct: 553 LIRGQLREYQMVGLDWMV 570
>TAIR|locus:504955712 [details] [associations]
symbol:AT3G54460 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001810 InterPro:IPR011124 Pfam:PF00176 Pfam:PF00271
Pfam:PF00646 Pfam:PF07496 PROSITE:PS50181 SMART:SM00184
SMART:SM00256 SMART:SM00490 GO:GO:0009506 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270
EMBL:AL138656 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 EMBL:AY091046 EMBL:BT004336
EMBL:AK221681 EMBL:AK227150 IPI:IPI00540934 PIR:T47605
RefSeq:NP_680129.1 UniGene:At.44814 ProteinModelPortal:Q9M1I1
SMR:Q9M1I1 PaxDb:Q9M1I1 PRIDE:Q9M1I1 EnsemblPlants:AT3G54460.1
GeneID:824611 KEGG:ath:AT3G54460 TAIR:At3g54460
HOGENOM:HOG000029561 InParanoid:Q9M1I1 OMA:NDPSHVE PhylomeDB:Q9M1I1
ProtClustDB:CLSN2690606 Genevestigator:Q9M1I1 Uniprot:Q9M1I1
Length = 1378
Score = 214 (80.4 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 64/211 (30%), Positives = 105/211 (49%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKM-YDLVLTTYSTLAI 408
K TLIV P ++ + W+TQ+++H L+ ++ L YD+V+TT+S L+
Sbjct: 754 KATLIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIELSPHSLAWDYDVVITTFSRLSA 813
Query: 409 EESW---LESPVKKIEWWRVILDEAHVIKNANAQQSR--TVTNLNAKRRWVVTGTPIQNG 463
E W +SP+ ++ W RV+LDE H + ++ + ++ +L A RW++TGTP N
Sbjct: 814 E--WNPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNT 871
Query: 464 SFDLFS----LMAFLQFEPFSVK-SYWQSLIQRPLAQGNRKGLSRL-QVLMSTISLRRTK 517
S L+ FL E + +W++ I RP +G RL Q+L + R K
Sbjct: 872 PNSQLSHIQPLLKFLHEEVYGENPKFWEAGILRPFEAEMEEGRLRLLQLLQRCMISSRKK 931
Query: 518 DKGLIGLQPKTIEKY-YVELSLEERKLYDEL 547
D +I P I+K Y+ + Y+EL
Sbjct: 932 DLQMI---PPCIKKVTYLNFLPGHARSYNEL 959
Score = 178 (67.7 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 42/128 (32%), Positives = 75/128 (58%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQF + + ++E+ L AG K ++ M + + + + F N LL +
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADC--MALL--M 1250
Query: 776 KASGA-GVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
SGA G++L+ + VFL+EP W+ ++EEQ + R HR+G K + + L +R +IEE+++
Sbjct: 1251 DGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMM 1310
Query: 835 E-LQDRKK 841
L+D +K
Sbjct: 1311 RFLEDAEK 1318
Score = 131 (51.2 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 62/257 (24%), Positives = 107/257 (41%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSR--TVTNLNAKRRWVVTGTPIQNGSFDLFS-- 469
+SP+ ++ W RV+LDE H + ++ + ++ +L A RW++TGTP N S
Sbjct: 820 KSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTPNSQLSHI 879
Query: 470 --LMAFLQFEPFSVK-SYWQSLIQRPLAQGNRKGLSRL-QVLMSTISLRRTKDKGLIGLQ 525
L+ FL E + +W++ I RP +G RL Q+L + R KD +I
Sbjct: 880 QPLLKFLHEEVYGENPKFWEAGILRPFEAEMEEGRLRLLQLLQRCMISSRKKDLQMI--- 936
Query: 526 PKTIEKY-YVELSLEERKLYDEL-EGKAKGVV----QDYINAGSLMRN----YSTVLSIL 575
P I+K Y+ + Y+EL E + ++ D + SL+ + + ++
Sbjct: 937 PPCIKKVTYLNFLPGHARSYNELVETVRRNILLADWNDPSHVESLLNSKQWKFRSITISN 996
Query: 576 LRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDG--EDFXXXXXXXXX 633
+RL C + +D I + N+ DL + +QD
Sbjct: 997 VRL-SCCVAGHIKMTDAGHDIKETMDALLENDLDLWTEEYSFIQDSLIGGCNCKRCGEWC 1055
Query: 634 XXXXXTCCAHIFCRSCI 650
T C H+ C C+
Sbjct: 1056 RLPVITPCRHLLCLDCV 1072
Score = 126 (49.4 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 200 ELFVHQKEGLGWLVRRENSEELP--PFW----EEKGGGF-VNVLT-NYHTDKRP--EPLR 249
+LF HQ+ +GW++ RE E+ P + E G F VN +T + T+ P + R
Sbjct: 329 KLFPHQQAAVGWMLERERKAEVSSHPLYLSFDTEDGFSFYVNAVTGDIITEAAPMVKDFR 388
Query: 250 GGIFADDMGLGKTLTLLSLI 269
GG+F D+ GLGKT+T LSLI
Sbjct: 389 GGMFCDEPGLGKTITALSLI 408
Score = 43 (20.2 bits), Expect = 9.0e-26, Sum P(3) = 9.0e-26
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 318 GKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLI 354
G K KTV + + KS+GM+N S S + + L+
Sbjct: 110 GSKEKTVQGRK----RVKSIGMVNGSISVVQQLHALV 142
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 272 (100.8 bits), Expect = 5.1e-34, Sum P(4) = 5.1e-34
Identities = 62/152 (40%), Positives = 91/152 (59%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++FSQ RKML L+++ L + G+ LR+DG+ A R + +EEF G P LL S +
Sbjct: 752 LIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEF-QEGHVAPIFLLTS-QV 809
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+ LT A RV +++P WNP+ + Q++DR +RIGQ +DV + RL+ ++EE+I Q
Sbjct: 810 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQ 869
Query: 838 DRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
K L + A K + R S DLR L SL
Sbjct: 870 VYKGGLFKTATEHK-EQIRYFSQQDLRELFSL 900
Score = 154 (59.3 bits), Expect = 5.1e-34, Sum P(4) = 5.1e-34
Identities = 54/201 (26%), Positives = 102/201 (50%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKI---TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
DD GK++ + + + K+ L+V P ++ W+ +L TV T YYG
Sbjct: 402 DDMGLGKTMQICSFLAGLFHSKLIKRALVVAPKTLLPHWMKELA--TVGLSQMTREYYGT 459
Query: 386 RTQ----DVEE-LKMYDLVLTTY-----STLAIE--ESWL-ESPVKKIEWWRVILDEAHV 432
T+ D+ L+ ++LTTY +T A++ + + E +W +ILDE H+
Sbjct: 460 STKAREYDLHHILQGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHL 519
Query: 433 IKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRP 492
IKN N Q+++++ + + R +++GTPIQN +L++L F K++++ +
Sbjct: 520 IKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHY 579
Query: 493 LAQGNRKGLS-RLQVLMSTIS 512
+ +G K + R Q + ST++
Sbjct: 580 ILRGTDKNATDREQRIGSTVA 600
Score = 73 (30.8 bits), Expect = 5.1e-34, Sum P(4) = 5.1e-34
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 249 RGGIFADDMGLGKTLTLLSLIA 270
+GGI DDMGLGKT+ + S +A
Sbjct: 396 KGGILGDDMGLGKTMQICSFLA 417
Score = 52 (23.4 bits), Expect = 5.1e-34, Sum P(4) = 5.1e-34
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I + L+ HQ+EGL WL
Sbjct: 373 IATMLYPHQREGLNWL 388
Score = 45 (20.9 bits), Expect = 7.3e-23, Sum P(4) = 7.3e-23
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 504 LQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGS 563
L V T+ K+ +GL T E Y E L+ L+GK G++ +
Sbjct: 429 LVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGK--GIL---LTTYD 483
Query: 564 LMRNYSTVL 572
++RN + L
Sbjct: 484 IVRNNTKAL 492
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 256 (95.2 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 66/218 (30%), Positives = 109/218 (50%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L + + CC HP L PP ++D + + K K+ +
Sbjct: 416 LLNIVMQLRKCC---NHPYLFDGAEPGPPYTTDEHLVYNSGKMIILDKM--------LKK 464
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K ++ ++FSQ ++L +LE+ ++ R+DGS + + R + I+E+ P
Sbjct: 465 FKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPD-SEKF 523
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ L + +A G G+NLT+A V L + WNP + QAMDR HRIGQK+ VK+ R + +I
Sbjct: 524 IFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAI 583
Query: 830 EERILELQDRKKKLAREAFR--RKGKDQREV--STDDL 863
EE++LE +K +L + + R+ V S DDL
Sbjct: 584 EEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDL 621
Score = 188 (71.2 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 63/248 (25%), Positives = 117/248 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK------MYDLVLTTYSTL 406
+++ P S W + + T P + + GD+ Q +K +D+++T++ +
Sbjct: 192 IVIVPKSTLDNWRREFAKWT-PDV-NVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEMI 249
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E+S L+ K W +++DEAH IKN ++ S+ + ++ R ++TGTP+QN +
Sbjct: 250 LREKSALQ----KFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHE 305
Query: 467 LFSLMAFL---------QFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTK 517
L++L+ FL QF+ + L + + K +S L L+S LRR K
Sbjct: 306 LWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVK 365
Query: 518 DKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST-VLSILL 576
L PK Y+ ++ + + Y L K + D +N R T +L+I++
Sbjct: 366 ADVEKSLLPKIETNVYIGMTDMQVEWYKRL--LEKDI--DAVNGVVGKREGKTRLLNIVM 421
Query: 577 RLRQICTN 584
+LR+ C +
Sbjct: 422 QLRKCCNH 429
Score = 63 (27.2 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKTL +S +
Sbjct: 160 GILADEMGLGKTLQTISFL 178
Score = 38 (18.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L E+ + G+L M G Q + L
Sbjct: 149 WLISLYENRLSGILADEMGLGKTLQTISFL 178
Score = 38 (18.4 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 602 EDVSNNPDLLKKLVEVLQD 620
E + N LL K +E LQD
Sbjct: 905 EKLINQQKLLAKKIESLQD 923
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 256 (95.2 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 66/218 (30%), Positives = 109/218 (50%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L + + CC HP L PP ++D + + K K+ +
Sbjct: 416 LLNIVMQLRKCC---NHPYLFDGAEPGPPYTTDEHLVYNSGKMIILDKM--------LKK 464
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K ++ ++FSQ ++L +LE+ ++ R+DGS + + R + I+E+ P
Sbjct: 465 FKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPD-SEKF 523
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ L + +A G G+NLT+A V L + WNP + QAMDR HRIGQK+ VK+ R + +I
Sbjct: 524 IFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAI 583
Query: 830 EERILELQDRKKKLAREAFR--RKGKDQREV--STDDL 863
EE++LE +K +L + + R+ V S DDL
Sbjct: 584 EEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDL 621
Score = 188 (71.2 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 63/248 (25%), Positives = 117/248 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK------MYDLVLTTYSTL 406
+++ P S W + + T P + + GD+ Q +K +D+++T++ +
Sbjct: 192 IVIVPKSTLDNWRREFAKWT-PDV-NVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEMI 249
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E+S L+ K W +++DEAH IKN ++ S+ + ++ R ++TGTP+QN +
Sbjct: 250 LREKSALQ----KFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHE 305
Query: 467 LFSLMAFL---------QFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTK 517
L++L+ FL QF+ + L + + K +S L L+S LRR K
Sbjct: 306 LWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVK 365
Query: 518 DKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST-VLSILL 576
L PK Y+ ++ + + Y L K + D +N R T +L+I++
Sbjct: 366 ADVEKSLLPKIETNVYIGMTDMQVEWYKRL--LEKDI--DAVNGVVGKREGKTRLLNIVM 421
Query: 577 RLRQICTN 584
+LR+ C +
Sbjct: 422 QLRKCCNH 429
Score = 63 (27.2 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKTL +S +
Sbjct: 160 GILADEMGLGKTLQTISFL 178
Score = 38 (18.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L E+ + G+L M G Q + L
Sbjct: 149 WLISLYENRLSGILADEMGLGKTLQTISFL 178
Score = 38 (18.4 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 602 EDVSNNPDLLKKLVEVLQD 620
E + N LL K +E LQD
Sbjct: 905 EKLINQQKLLAKKIESLQD 923
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 253 (94.1 bits), Expect = 6.9e-34, Sum P(3) = 6.9e-34
Identities = 66/206 (32%), Positives = 102/206 (49%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXR 709
+L + + CC HP L PP ++D + + K K+ R
Sbjct: 453 LLNIVMQLRKCC---NHPYLFEGAEPGPPYTTDEHLVYNSGKMVVLDKL--------LKR 501
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
K ++ ++FSQ ++L +LE+ +K R+DG + R I+E+ PG
Sbjct: 502 LKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPG-SEKF 560
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
V L + +A G G+NLT A V L + WNP + QAMDR HRIGQ + V + R +V N+I
Sbjct: 561 VFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTI 620
Query: 830 EERILELQDRKKKLAREAFRRKGKDQ 855
EE++LE +K L R ++ G+ Q
Sbjct: 621 EEKVLERAAQKLHLDRLVIQQ-GRAQ 645
Score = 192 (72.6 bits), Expect = 6.9e-34, Sum P(3) = 6.9e-34
Identities = 60/237 (25%), Positives = 113/237 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVP-GMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAI 408
L++ P S W + + T +L +R + E + +D+ +T+Y +
Sbjct: 239 LVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAALIAERLVDESFDVCITSYEMILR 298
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
E+S L KK W +I+DEAH IKN + ++ + N++ R ++TGTP+QN +L+
Sbjct: 299 EKSHL----KKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELW 354
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKT 528
+L+ FL + F + Q + + +L ++ LRR K L PK
Sbjct: 355 ALLNFLLPDVFGDSEAFDQWFSGE-GQDSDTVVQQLHRVLRPFLLRRVKADVEKSLLPKK 413
Query: 529 IEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST-VLSILLRLRQICTN 584
Y++++ +R Y ++ K + D +N + R T +L+I+++LR+ C +
Sbjct: 414 EVNLYLKMTEMQRTWYQKI--LEKDI--DAVNGANGKRESKTRLLNIVMQLRKCCNH 466
Score = 63 (27.2 bits), Expect = 6.9e-34, Sum P(3) = 6.9e-34
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKTL +S +
Sbjct: 207 GILADEMGLGKTLQTISFL 225
Score = 43 (20.2 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 17/81 (20%), Positives = 36/81 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEELKM--YDLVLTTYSTLAIEESWLESPVKKIE 421
W+ L E+ + G+L M G Q + L + + +T + + +S L++ ++
Sbjct: 196 WLISLHENGISGILADEMGLGKTLQTISFLGYLRHIMGITGPHLVIVPKSTLDNWKREFG 255
Query: 422 WWRVILDEAHVIKNANAQQSR 442
W E +V+ A++ R
Sbjct: 256 KWT---PEVNVLVLQGAKEER 273
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 255 (94.8 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 285 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 342
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 343 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 401
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 402 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 461
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 462 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 502
Score = 182 (69.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 59 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 115
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 116 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 172
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 173 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 232
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 233 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 288
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 289 NTIMQLRKICNH 300
Score = 64 (27.6 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 27 GILADEMGLGKTIQTIALI 45
Score = 37 (18.1 bits), Expect = 8.2e-11, Sum P(3) = 8.2e-11
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 602 LTEKQWLKAIEEGTLEEIEEEVRQKK 627
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 231 (86.4 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 55/143 (38%), Positives = 84/143 (58%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FS F ++L +LE L +K LRLDGS R +I++F P +L S
Sbjct: 968 KVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYED-KDIPIFIL-ST 1025
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+ V + + +NP + QA DR HR+GQ ++V I LI ++SIEE+I +
Sbjct: 1026 KAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQ 1085
Query: 836 LQDRKKKLAREAFRRKGKDQREV 858
L K KLA +++ + K ++V
Sbjct: 1086 LA--KNKLALDSYISEDKKSQDV 1106
Score = 216 (81.1 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 65/213 (30%), Positives = 108/213 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK--------MYDLVLTTYS 404
L+V P S W+ + ++ P LK YYG Q+ EEL+ YD+++TTY+
Sbjct: 624 LVVVPSSTLENWLREFQKFA-PA-LKIEPYYGS-LQEREELRDILERNAGKYDVIVTTYN 680
Query: 405 TLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
LA + S +K + V+ DE H++KN+ +++ + + A R ++TGTP+QN
Sbjct: 681 -LAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNL 739
Query: 465 FDLFSLMAFLQFEPF-SVKSYWQSLI-QRPLAQGNRKG---------LSRLQVLMSTISL 513
+L SL+ F+ F S K + ++ QR + K ++R + +M L
Sbjct: 740 KELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKTMMKPFIL 799
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDE 546
RR KD+ L L PK Y EL+ ++K+YD+
Sbjct: 800 RRRKDQVLKHLPPKHTHIQYCELNAIQKKIYDK 832
Score = 60 (26.2 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 252 IFADDMGLGKTLTLLSLIA 270
I ADDMGLGKT ++S A
Sbjct: 594 ILADDMGLGKTCQVISFFA 612
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 285 (105.4 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 61/152 (40%), Positives = 92/152 (60%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++FSQF ML ++ + L+ G L +DG +K R ++ F N G + L SLKA
Sbjct: 917 LLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAF-NEGEND--IFLISLKA 973
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NL A V L + WWNPAVEEQA R HRIGQK V++ R+I + +IEERI +LQ
Sbjct: 974 GGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIFDLQ 1033
Query: 838 DRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+K+ L E + + ++ST++++ ++ L
Sbjct: 1034 KKKQALVDELIQPGEQMLGKLSTEEIKQILQL 1065
Score = 143 (55.4 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 65/265 (24%), Positives = 123/265 (46%)
Query: 329 DDNVKGKSVGMLNKSSSFM----GKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMY-- 382
DD GK+V ++ +S + K LI+ P S+ W ++LE+ P + T ++
Sbjct: 641 DDMGLGKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQSELEKFA-PAIPVTVLHGT 699
Query: 383 YGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSR 442
R ++EE+K + L +Y +L + + + VI+DE+ IKN + + S+
Sbjct: 700 KQSRIAEMEEMKHGHVYLISYPSLRQDIVHFAD----VAFSSVIIDESQAIKNYHTKASQ 755
Query: 443 TVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLS 502
V L + ++GTP++N +L+++ L P ++ SL R + ++
Sbjct: 756 AVRALKRNHVFALSGTPLENSIDELWAIFQTLM--P----GFFPSL--RKFKEIPYDNIA 807
Query: 503 RLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAG 562
++ + LRR K + L K Y EL+ E++ +Y K + ++ + G
Sbjct: 808 KM---IRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIYLAYLEKIQADLE--ASNG 862
Query: 563 SLMRNYSTVLSILLRLRQICTNLAL 587
+ +L+ L RLRQIC + +L
Sbjct: 863 NASEERIKLLAGLTRLRQICCDPSL 887
Score = 74 (31.1 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLIA 270
GGI ADDMGLGKT+ +S +A
Sbjct: 636 GGILADDMGLGKTVQTISFLA 656
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 245 (91.3 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 49/136 (36%), Positives = 83/136 (61%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFG-NPGPGGPT 769
K+ + +++ Q +M+ + EE L +K +RLDGS + R ++++ + NP
Sbjct: 1249 KRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMVQAWQTNPEI---F 1305
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ + S +A G G+NLT+A V + WNP ++ QAMDR HRIGQ + VK+ RL+ RN+I
Sbjct: 1306 IFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTI 1365
Query: 830 EERILELQDRKKKLAR 845
E++ILE K+++ +
Sbjct: 1366 EQKILERAKEKEEIQK 1381
Score = 199 (75.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 70/265 (26%), Positives = 130/265 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRT-----QDVEELKMYD------L 398
L+V P S W ++ + VP K Y+G DR D + L+ YD +
Sbjct: 725 LVVTPASTLHNWQQEITKF-VPEF-KVLPYWGNAKDRKILRKFWDRKSLR-YDKDSPFHV 781
Query: 399 VLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
++T+Y + + ++ + K++W +ILDEA IK++++ + +++ NL + R ++TGT
Sbjct: 782 LVTSYQLIVADIAYFQ----KMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGT 837
Query: 459 PIQNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQGN----RKGLSRLQVLMSTI 511
PIQN +L++L+ F+ F+ S W + AQ N + L RL +++
Sbjct: 838 PIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKPF 897
Query: 512 SLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNY-ST 570
LRR K L K Y +L+ ++KLY +L + D + S + S+
Sbjct: 898 MLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSS 957
Query: 571 VLSILLRLRQICTNLALCP-SDVRS 594
+ +++++ R++C + L +DV S
Sbjct: 958 LANLVMQFRKVCNHPDLFERADVNS 982
Score = 64 (27.6 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ +S++A
Sbjct: 693 GILADEMGLGKTVQSISVLA 712
Score = 47 (21.6 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL----KMYD-----LVLTTYSTLAIEESWLE 414
W+ L E + G+L M G Q + L + Y+ LV+T STL +W +
Sbjct: 682 WLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTL---HNWQQ 738
Query: 415 SPVKKIEWWRVI 426
K + ++V+
Sbjct: 739 EITKFVPEFKVL 750
Score = 42 (19.8 bits), Expect = 3.3e-31, Sum P(3) = 3.3e-31
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 318 GKKHKT---VNTKMDDNVKGKSVGMLNKSSSFMG 348
GKK KT T DDN+K + L+K + G
Sbjct: 558 GKKIKTDELEGTNADDNLKSNTKEHLDKYADVDG 591
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 255 (94.8 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 366 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 423
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 424 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 482
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 483 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 542
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 543 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 583
Score = 182 (69.1 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 140 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 196
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 197 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 253
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 254 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 313
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 314 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 369
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 370 NTIMQLRKICNH 381
Score = 64 (27.6 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 108 GILADEMGLGKTIQTIALI 126
Score = 37 (18.1 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 716 LTEKQWLKAIEEGTLEEIEEEVRQKK 741
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 250 (93.1 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 80/232 (34%), Positives = 121/232 (52%)
Query: 650 ILKTL-QHTKPCCPLCRHPL-LQSDLFSSPPES-----SDMD----IAGKTLKNFTSSKV 698
+LK L H + RH L L S FS E+ SD+D + TL S K+
Sbjct: 428 VLKKLCDHPRLLSARARHLLSLGSVKFSVQGENEGEDASDVDHIDHVTDDTLME-ESGKM 486
Query: 699 SAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSM-NAKKRAQVI 757
RD+ T +VFSQ R++L ++E L+ FK+LR+DG++ + +R + I
Sbjct: 487 IFLIELLRRLRDEGHQT--LVFSQSRQILNIIERLLKNRHFKILRVDGTVTHLVEREKRI 544
Query: 758 EEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKED 817
F +V L + + G G+ LTAA+RV + +P WNPA + QA+DRV+RIGQKE+
Sbjct: 545 HLFQQNKDY--SVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKEN 602
Query: 818 VKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ + RLI ++EE+I Q K L R+ K R + +LR L ++
Sbjct: 603 IVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFTKQELRELFTI 654
Score = 172 (65.6 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 62/212 (29%), Positives = 105/212 (49%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM-LKTY--MY 382
DD GK+V ++ S + L++ P ++ STWI + + T PGM +KT+
Sbjct: 144 DDMGLGKTVQIIAFLSGMFDATLVSHVLLIMPTNLISTWIKEFVKWT-PGMRVKTFHGSS 202
Query: 383 YGDRTQDVEELKMYD-LVLTTYSTLAIEESWLES-PVKKIEWWRVILDEAHVIKNANAQQ 440
+RT+++ ++ + +++TTY L L S ++ W VILDEAH IK ++ +
Sbjct: 203 KDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSLNGQEFVWDYVILDEAHKIKTSSTKS 262
Query: 441 SRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFL-QFEPFSVKSYWQSLIQRPLAQGNRK 499
+ + A+ R ++TGTPIQN +L+SL F Q ++ + P+ + K
Sbjct: 263 AICARAVPARNRILLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKIEYENPIMRAREK 322
Query: 500 ---------GLSRLQVLMSTIS---LRRTKDK 519
GL + LM+ I LRRTK++
Sbjct: 323 DATPGEKALGLKISENLMAIIKSHFLRRTKEE 354
Score = 82 (33.9 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 210 GWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
G L+ RE +L F +K G V L + + D R +GGI ADDMGLGKT+ +++ +
Sbjct: 107 GLLLYRELHNQL--FEHQKEG--VAFLYSLYRDGR----KGGILADDMGLGKTVQIIAFL 158
Query: 270 A 270
+
Sbjct: 159 S 159
Score = 47 (21.6 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
+ ++LF HQKEG+ +L
Sbjct: 114 LHNQLFEHQKEGVAFL 129
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 260 (96.6 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 73/196 (37%), Positives = 109/196 (55%)
Query: 679 ESSDMD----IAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPL 734
+SSD+D I+ TL S K+ RD+ T +VFSQ R++L ++E L
Sbjct: 442 DSSDVDHIDQISDDTLME-ESGKMLFLMDLLKKLRDEGHQT--LVFSQSRRILNIIERLL 498
Query: 735 QAAGFKLLRLDGSM-NAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLL 793
+ FK+LR+DG++ + +R + I F +V L + + G G+ LTAASRV +
Sbjct: 499 KNRHFKILRIDGTITHLVEREKRISLFQQNKDY--SVFLLTTQVGGVGLTLTAASRVVIF 556
Query: 794 EPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGK 853
+P WNPA + QA+DRV+RIGQKE+V + RLI ++EE+I Q K L R+ K
Sbjct: 557 DPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKN 616
Query: 854 DQREVSTDDLRILMSL 869
R S +LR L ++
Sbjct: 617 PFRYFSKQELRELFTI 632
Score = 166 (63.5 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 66/230 (28%), Positives = 111/230 (48%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM-LKTYM--Y 382
DD GK+V ++ S + L++ P S+ STW+ + + T PGM +KT+
Sbjct: 122 DDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTSLISTWLREFVKWT-PGMRVKTFHGPS 180
Query: 383 YGDRTQDVEELKMYD-LVLTTYSTLAIEESWLES-PVKKIEWWRVILDEAHVIKNANAQQ 440
+RT+++ ++ + +++TTY L L S ++ W VILDEAH IK+++ +
Sbjct: 181 KDERTRNLCRIQQRNGVIITTYQMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKS 240
Query: 441 SRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFL-QFEPFSVKSYWQSLIQRPLAQGNRK 499
+ + A R ++TGTPIQN +L+SL F Q ++ + P+ + K
Sbjct: 241 AICARAIPASNRILLTGTPIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREK 300
Query: 500 ---------GLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELS 537
G + LM+ I LRRTK++ +Q K V+LS
Sbjct: 301 DATPGEKALGFKISENLMAIIKPYFLRRTKEE----VQKKKSSNPEVQLS 346
Score = 77 (32.2 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 210 GWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
G L+ +E +L + +E G F L + + D R RGGI ADDMGLGKT+ +++ +
Sbjct: 85 GLLLYQELHNQLYEYQKE-GIAF---LYSLYRDGR----RGGILADDMGLGKTVQIIAFL 136
Query: 270 A 270
+
Sbjct: 137 S 137
Score = 39 (18.8 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
+ ++L+ +QKEG+ +L
Sbjct: 92 LHNQLYEYQKEGIAFL 107
Score = 37 (18.1 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 415 SPVKKIEWWRVILDEAHVIKNANAQQSRTVTNL 447
SP + + R + + KN + +Q+ + NL
Sbjct: 14 SPEQAASYLRYVKEAKEATKNGDLEQALKLFNL 46
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 249 (92.7 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 50/133 (37%), Positives = 83/133 (62%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ K ++F+QF KML +LE L + +RLDGS ++R +++ +F N +
Sbjct: 1781 KREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDK--SIFI 1838
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
++S ++ G+NLTAA+ V + WNP++++QAMDR HRIGQ +DV + R + ++E
Sbjct: 1839 FISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVE 1898
Query: 831 ERILELQDRKKKL 843
E I + Q +K+KL
Sbjct: 1899 ENIWKKQLQKRKL 1911
Score = 203 (76.5 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 68/251 (27%), Positives = 124/251 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL------KMYDLVLTTYSTL 406
L++ P S+ W +L+ P K YYG++ + ++ + + +++YST+
Sbjct: 715 LVIVPTSILINWEIELKRFC-P-CFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTV 772
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ + K+ W +ILDEAH IKN N ++ + +L ++TGTP+QN +
Sbjct: 773 -VKDHLV---FKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEE 828
Query: 467 LFSLMAFLQFEPFSVK---SYWQS-----LIQRPLAQGNRKGLSRLQVLMSTISLRRTKD 518
L+SL+ FL F+ W S I++ +++ + RL ++ LRR K
Sbjct: 829 LWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLK- 887
Query: 519 KGLIGLQPKTIEKYYVELSLEERK--LYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K + P E + ++ L R+ LYDE VQ+ +N G NY +++IL+
Sbjct: 888 KNVEKEMPNKYE-HIIKCKLTRRQQILYDEFINNKN--VQNTLNTG----NYIGLMNILI 940
Query: 577 RLRQICTNLAL 587
+LR++C + L
Sbjct: 941 QLRKVCNHCDL 951
Score = 68 (29.0 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKTL +SL++
Sbjct: 683 GILADEMGLGKTLQCISLLS 702
Score = 39 (18.8 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 196 VIKSELFVHQKEGLGWLV 213
+IK+ L +Q GL WL+
Sbjct: 657 IIKATLRDYQHAGLHWLL 674
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 249 (92.7 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 50/133 (37%), Positives = 83/133 (62%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ K ++F+QF KML +LE L + +RLDGS ++R +++ +F N +
Sbjct: 1781 KREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDK--SIFI 1838
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
++S ++ G+NLTAA+ V + WNP++++QAMDR HRIGQ +DV + R + ++E
Sbjct: 1839 FISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVE 1898
Query: 831 ERILELQDRKKKL 843
E I + Q +K+KL
Sbjct: 1899 ENIWKKQLQKRKL 1911
Score = 203 (76.5 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 68/251 (27%), Positives = 124/251 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL------KMYDLVLTTYSTL 406
L++ P S+ W +L+ P K YYG++ + ++ + + +++YST+
Sbjct: 715 LVIVPTSILINWEIELKRFC-P-CFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTV 772
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ + K+ W +ILDEAH IKN N ++ + +L ++TGTP+QN +
Sbjct: 773 -VKDHLV---FKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEE 828
Query: 467 LFSLMAFLQFEPFSVK---SYWQS-----LIQRPLAQGNRKGLSRLQVLMSTISLRRTKD 518
L+SL+ FL F+ W S I++ +++ + RL ++ LRR K
Sbjct: 829 LWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLK- 887
Query: 519 KGLIGLQPKTIEKYYVELSLEERK--LYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K + P E + ++ L R+ LYDE VQ+ +N G NY +++IL+
Sbjct: 888 KNVEKEMPNKYE-HIIKCKLTRRQQILYDEFINNKN--VQNTLNTG----NYIGLMNILI 940
Query: 577 RLRQICTNLAL 587
+LR++C + L
Sbjct: 941 QLRKVCNHCDL 951
Score = 68 (29.0 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKTL +SL++
Sbjct: 683 GILADEMGLGKTLQCISLLS 702
Score = 39 (18.8 bits), Expect = 3.1e-33, Sum P(4) = 3.1e-33
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 196 VIKSELFVHQKEGLGWLV 213
+IK+ L +Q GL WL+
Sbjct: 657 IIKATLRDYQHAGLHWLL 674
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 190 (71.9 bits), Expect = 4.0e-33, Sum P(6) = 4.0e-33
Identities = 69/243 (28%), Positives = 110/243 (45%)
Query: 647 RSCILKTLQHTKPCCPLCRHPLLQSDLFSSP---PESSDMDI----AGKTLKNFTSSKVS 699
R + +TLQ C +H +++ ++ SSD D A ++ +K+
Sbjct: 1375 RKSVQETLQKWVMCPICRQHTDVRNIAYADDRRNSSSSDQDHKDSEASLVVQGSYGTKIE 1434
Query: 700 AXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEE 759
A + P TK +VFS + +L +LE A +R+ G +K I +
Sbjct: 1435 AVTRRILWIKSSDPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGG---RKSQTAISK 1491
Query: 760 F-GNPGPGGPT-----------VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMD 807
F G+ T VLL ++ G+NL A V L+EP NPA E QA+
Sbjct: 1492 FKGSEKETQKTNSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVG 1551
Query: 808 RVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK-KLAREAFRR-KGKDQREVSTDDLRI 865
RVHRIGQ++ + R +V ++EE I +L K L+ + R K +DQ+ ++ DL
Sbjct: 1552 RVHRIGQEKPTLVHRFLVSGTVEESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLKDLES 1611
Query: 866 LMS 868
L +
Sbjct: 1612 LFA 1614
Score = 187 (70.9 bits), Expect = 4.0e-33, Sum P(6) = 4.0e-33
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 413 LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMA 472
+ +P+ +I WWR+ LDEA ++++ A + L K RW +TGTPIQ DLF L+
Sbjct: 591 IPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLK 650
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTK 517
FL+ PF V +W +I+ P + + K + + R +K
Sbjct: 651 FLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSK 695
Score = 101 (40.6 bits), Expect = 4.0e-33, Sum P(6) = 4.0e-33
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 339 MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--------DV 390
+L ++S + TLIVCP + W +++ HT G L T +Y G R D+
Sbjct: 489 LLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMIDI 548
Query: 391 EELKMYDLVLTTYSTL 406
EL D+VLTTY L
Sbjct: 549 TELLNADIVLTTYDVL 564
Score = 74 (31.1 bits), Expect = 4.0e-33, Sum P(6) = 4.0e-33
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 248 LRGGIFADDMGLGKTLTLLSLI 269
++GGI AD+MGLGKT+ LL+ I
Sbjct: 355 IQGGILADEMGLGKTVELLACI 376
Score = 49 (22.3 bits), Expect = 4.0e-33, Sum P(6) = 4.0e-33
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 571 VLSILLRLRQICTNLALCPSDVRSIIPSN-TIEDV 604
+L+ LL+LRQ C + + S +RS+ S T+E++
Sbjct: 767 LLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEI 801
Score = 42 (19.8 bits), Expect = 4.0e-33, Sum P(6) = 4.0e-33
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 200 ELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLT 237
EL +Q+ W+V+RE + + +++ F++ L+
Sbjct: 287 ELRPYQRRAAYWMVQRERGDPIT-LGDKEDNQFISPLS 323
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 274 (101.5 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 75/215 (34%), Positives = 113/215 (52%)
Query: 663 LCRHPLLQSDLFSSPPESSD--MDI-----AGKTLKNFTSSKVSAXXXXXXXXRDKKPTT 715
LC HP L + + E D +D+ + K ++ S K+ R +
Sbjct: 450 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTT-SD 508
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLAS 774
K V+ S + + L L E+ + + +RLDG+M+ KKRA+++E F NP P + + S
Sbjct: 509 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS--SPEFIFMLS 566
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+IL
Sbjct: 567 SKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIL 626
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ Q KK L+ + +R S +LR L SL
Sbjct: 627 QRQAHKKALSSCVVDEEQDVERHFSLGELRELFSL 661
Score = 144 (55.7 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 51/176 (28%), Positives = 90/176 (51%)
Query: 425 VILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSY 484
VI DE H +KN++ Q + ++NA+RR +++GTPIQN + FSL+ F+
Sbjct: 287 VICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 346
Query: 485 WQSLIQRPLAQGN---------RKGLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKY 532
++ + P+ +G G +LQ L+S ++ +RRT D L P IE+
Sbjct: 347 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDI-LSKYLPVKIEQV 405
Query: 533 YV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
L+ +++LY +AK V + + G + + S+ LS + L+++C + AL
Sbjct: 406 VCCNLTPLQKELYKLFLKQAKPV--ESLQTGKI--SVSS-LSSITSLKKLCNHPAL 456
Score = 71 (30.1 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 233 VNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
V L + T +R E G I AD+MGLGKTL ++LI
Sbjct: 155 VKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI 191
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 255 (94.8 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 832 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 889
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 890 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 948
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 949 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1008
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1009 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1049
Score = 182 (69.1 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 606 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 662
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 663 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 719
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 720 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 779
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 780 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 835
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 836 NTIMQLRKICNH 847
Score = 64 (27.6 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 574 GILADEMGLGKTIQTIALI 592
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 283 (104.7 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 76/215 (35%), Positives = 111/215 (51%)
Query: 663 LCRHPLL-------QSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTT 715
LC HP L + D F E + K L+ S K+ R + +
Sbjct: 456 LCNHPALIYDKCVEEEDGFEGALEIFPPTYSAKALEPQLSGKMLVLDYILAVTRSRS-SD 514
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNP-GPGGPTVLLAS 774
K V+ S + + L L E+ +A + +RLDG+M+ KKRA+V+E F NP P V + S
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPLSPD--FVFMLS 572
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I
Sbjct: 573 SKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIF 632
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ Q KK L+ + +R S +L+ L +L
Sbjct: 633 QRQSHKKALSSCVVDEEQDVERHFSLGELKELFTL 667
Score = 138 (53.6 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 52/176 (29%), Positives = 88/176 (50%)
Query: 425 VILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSY 484
VI DE H +KN+ Q + + +LN RR +++GTPIQN + FSL+ F+
Sbjct: 293 VICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHE 352
Query: 485 WQSLIQRPLAQG--------NRK-GLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKY 532
++ + P+ +G +R+ G RL+ L S ++ +RRT D L P IE+
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDI-LSKYLPVKIEQV 411
Query: 533 YV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
L+ + +LY +AK + + G + S++ SI L L+++C + AL
Sbjct: 412 VCCRLTPLQTELYKRFLKQAKPAEE--LREGKM--TVSSLSSITL-LKKLCNHPAL 462
Score = 67 (28.6 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 241 TDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
T +R G I AD+MGLGKTL ++LI
Sbjct: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLI 197
Score = 37 (18.1 bits), Expect = 8.3e-30, Sum P(3) = 8.3e-30
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELP 222
++ L HQ+EG+ +L S +P
Sbjct: 148 ILSKVLRPHQREGVKFLWECVTSRRIP 174
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 245 (91.3 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 51/128 (39%), Positives = 80/128 (62%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVL--LASL 775
+++SQF KM+ +LE+ + +K LRLDGS R ++++F + P++ L S
Sbjct: 1787 LIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMVDDFQSD----PSIFAFLLST 1842
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
+A G G+NLT+A V + WNP V+EQA DR HR+GQ V + RLI +N+IEE+IL+
Sbjct: 1843 RACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILK 1902
Query: 836 LQDRKKKL 843
+K ++
Sbjct: 1903 RAKQKHQI 1910
Score = 211 (79.3 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 62/253 (24%), Positives = 121/253 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDV------EELKMYD------LVL 400
LIV P S W + + VP K Y+G + Q K+Y +++
Sbjct: 1215 LIVTPKSTLHNWKNEFAKF-VPAF-KVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLI 1272
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+Y+ + +E + ++ W ++LDEAH IK++ + + +T+ + N + R ++TGTPI
Sbjct: 1273 TSYNVIVRDEKYFH----RLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPI 1328
Query: 461 QNGSFDLFSLMAFLQ---FEPFSVKSYWQS--LIQRPLAQG--NRKGLSRLQVLMSTISL 513
QN +L++L+ F+ F+ + W S + ++QG N L+RL +++ L
Sbjct: 1329 QNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFML 1388
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYS--TV 571
RR K + KT + Y L+ ++KLY + + + + S S +
Sbjct: 1389 RRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSIRSNIS--ITELLGGASFSEQGSMKAL 1446
Query: 572 LSILLRLRQICTN 584
++ +++ R++C +
Sbjct: 1447 MNFVMQFRKVCNH 1459
Score = 62 (26.9 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++++A
Sbjct: 1183 GILADEMGLGKTIQSIAVLA 1202
Score = 48 (22.0 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 363 TWITQLEEHTVPGMLKTYMYYGDRTQDV-------EELKMYD--LVLTTYSTLAIEESWL 413
TWI L + + G+L M G Q + EE ++ L++T STL +W
Sbjct: 1171 TWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIVTPKSTL---HNWK 1227
Query: 414 ESPVKKIEWWRVI 426
K + ++VI
Sbjct: 1228 NEFAKFVPAFKVI 1240
Score = 38 (18.4 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 140 LQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFK 175
L S D++ + M+ + ++ K D+IF+
Sbjct: 669 LDFDSDEDITEEYYKKMLANHARSKKSKKETDKIFR 704
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 589 PSDVRSIIPSNTIEDV 604
PS I+PSNT+ ++
Sbjct: 412 PSTTSPIMPSNTLFNI 427
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 265 (98.3 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 74/214 (34%), Positives = 109/214 (50%)
Query: 663 LCRHPLLQSDLFSSPPES--SDMDI--AGKTLKNFTSSKVSAXXXXXXXXRDKKPTT--K 716
LC HP L D E +D+ AG + K+ K T+ K
Sbjct: 445 LCNHPALIYDKCVEEEEGFMGALDLFPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDK 504
Query: 717 SVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASL 775
V+ S + + L L E+ + + +RLDG+M+ KKRA+V+E F +P P + + S
Sbjct: 505 VVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPS--SPEFIFMLSS 562
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I +
Sbjct: 563 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQ 622
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q KK L+ + +R S +L+ L SL
Sbjct: 623 RQTHKKALSSCVVDEEQDVERHFSLGELKELFSL 656
Score = 157 (60.3 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 67/255 (26%), Positives = 120/255 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTLAI- 408
++V P S+ W ++E+ + G ++ G ++++ M L S + I
Sbjct: 204 MVVSPSSLVRNWYNEVEKW-LGGRIQPLAIDGGSKEEIDRKLVGSMNQRGLRVPSPILII 262
Query: 409 --EESWLESP-VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
E L + ++K VI DE H +KN+ Q + + +LN RR +++GTPIQN
Sbjct: 263 SYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLL 322
Query: 466 DLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN---------RKGLSRLQVLMSTIS---L 513
+ FSL+ F+ ++ + P+ +G +KG RL+ L+S ++ +
Sbjct: 323 EYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLI 382
Query: 514 RRTKDKGLIGLQPKTIEKYYV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVL 572
RRT D L P IE+ L+ + +LY +AK V + + G + N S+ L
Sbjct: 383 RRTSDI-LSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEE--LKEGKI--NVSS-L 436
Query: 573 SILLRLRQICTNLAL 587
S + L+++C + AL
Sbjct: 437 SSITSLKKLCNHPAL 451
Score = 65 (27.9 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 233 VNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
V L + T +R G I AD+MGLGKTL ++L+
Sbjct: 150 VKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLM 186
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 254 (94.5 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 61/155 (39%), Positives = 89/155 (57%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA-KKRAQVIEEFGNPGPGGPTVLLAS 774
++++FSQ RKML ++E L+ F+LLRLDG++ +R + I F T+ L +
Sbjct: 493 RTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRY--TIFLLT 550
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
+ G G+ LT A+RV + +P WNPA + QA+DR +RIGQ E+V I RLI ++EE+I
Sbjct: 551 TQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIY 610
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q K L R+ K R S +LR L L
Sbjct: 611 RRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKL 645
Score = 176 (67.0 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 64/243 (26%), Positives = 118/243 (48%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKI---TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG- 384
DD GK++ +++ S ++ TL+V P S+ W+ + + T PGM + ++G
Sbjct: 131 DDMGLGKTIQVISFLSGMYDAELANHTLLVMPTSLIKNWVREFAKWT-PGM-RVKEFHGS 188
Query: 385 ---DRTQDVEELKMYD-LVLTTYSTLAIEESWLESPV-KKIEWWRVILDEAHVIKNANAQ 439
+R +++E ++ +++TTY L L S ++ +W VILDEAH IK ++ +
Sbjct: 189 SKTERNRNLERIQRKGGVIITTYQMLINNYEQLGSNGHREFKWDYVILDEAHKIKTSSTK 248
Query: 440 QSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFL-QFEPFSVKSYWQSLIQRPLAQGNR 498
+++ + AK R ++TGTP+QN ++++L F Q +++ + P+ +
Sbjct: 249 TAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLGTSKTFKTEYENPITRARE 308
Query: 499 K---------GLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDE 546
K GL Q L I LRRTK + + +E+ + E +E K +
Sbjct: 309 KDATPGEKALGLRISQNLTDIIKPYFLRRTKAD--VQQKKLKLEEGFEEEEDQENKCPNA 366
Query: 547 LEG 549
EG
Sbjct: 367 REG 369
Score = 76 (31.8 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 249 RGGIFADDMGLGKTLTLLSLIA 270
+GGI ADDMGLGKT+ ++S ++
Sbjct: 125 KGGILADDMGLGKTIQVISFLS 146
Score = 40 (19.1 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 200 ELFVHQKEGLGWL 212
+L+ HQKEG+ +L
Sbjct: 104 KLYDHQKEGVAFL 116
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 265 (98.3 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 74/214 (34%), Positives = 109/214 (50%)
Query: 663 LCRHPLLQSDLFSSPPES--SDMDI--AGKTLKNFTSSKVSAXXXXXXXXRDKKPTT--K 716
LC HP L D E +D+ AG + K+ K T+ K
Sbjct: 445 LCNHPALIYDKCVEEEEGFMGALDLFPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDK 504
Query: 717 SVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASL 775
V+ S + + L L E+ + + +RLDG+M+ KKRA+V+E F +P P + + S
Sbjct: 505 VVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPS--SPEFIFMLSS 562
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I +
Sbjct: 563 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQ 622
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q KK L+ + +R S +L+ L SL
Sbjct: 623 RQTHKKALSSCVVDEEQDVERHFSLGELKELFSL 656
Score = 156 (60.0 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 67/256 (26%), Positives = 122/256 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLV----LTTYSTLAI 408
++V P S+ W ++E+ + G ++ G ++++ K+ + L S + I
Sbjct: 204 MVVSPSSLVRNWYNEVEKW-LGGRIQPLAIDGGSKEEIDR-KLVGFMNQRGLRVPSPILI 261
Query: 409 ---EESWLESP-VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
E L + ++K VI DE H +KN+ Q + + +LN RR +++GTPIQN
Sbjct: 262 ISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDL 321
Query: 465 FDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN---------RKGLSRLQVLMSTIS--- 512
+ FSL+ F+ ++ + P+ +G +KG RL+ L+S ++
Sbjct: 322 LEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCL 381
Query: 513 LRRTKDKGLIGLQPKTIEKYYV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
+RRT D L P IE+ L+ + +LY +AK V + + G + N S+
Sbjct: 382 IRRTSDI-LSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEE--LKEGKI--NVSS- 435
Query: 572 LSILLRLRQICTNLAL 587
LS + L+++C + AL
Sbjct: 436 LSSITSLKKLCNHPAL 451
Score = 65 (27.9 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 233 VNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
V L + T +R G I AD+MGLGKTL ++L+
Sbjct: 150 VKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLM 186
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 265 (98.3 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 74/214 (34%), Positives = 109/214 (50%)
Query: 663 LCRHPLLQSDLFSSPPES--SDMDI--AGKTLKNFTSSKVSAXXXXXXXXRDKKPTT--K 716
LC HP L D E +D+ AG + K+ K T+ K
Sbjct: 454 LCNHPALIYDKCVEEEEGFMGALDLFPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDK 513
Query: 717 SVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASL 775
V+ S + + L L E+ + + +RLDG+M+ KKRA+V+E F +P P + + S
Sbjct: 514 VVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPS--SPEFIFMLSS 571
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I +
Sbjct: 572 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQ 631
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q KK L+ + +R S +L+ L SL
Sbjct: 632 RQTHKKALSSCVVDEEQDVERHFSLGELKELFSL 665
Score = 156 (60.0 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 67/256 (26%), Positives = 122/256 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLV----LTTYSTLAI 408
++V P S+ W ++E+ + G ++ G ++++ K+ + L S + I
Sbjct: 213 MVVSPSSLVRNWYNEVEKW-LGGRIQPLAIDGGSKEEIDR-KLVGFMNQRGLRVPSPILI 270
Query: 409 ---EESWLESP-VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
E L + ++K VI DE H +KN+ Q + + +LN RR +++GTPIQN
Sbjct: 271 ISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDL 330
Query: 465 FDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN---------RKGLSRLQVLMSTIS--- 512
+ FSL+ F+ ++ + P+ +G +KG RL+ L+S ++
Sbjct: 331 LEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCL 390
Query: 513 LRRTKDKGLIGLQPKTIEKYYV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
+RRT D L P IE+ L+ + +LY +AK V + + G + N S+
Sbjct: 391 IRRTSDI-LSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEE--LKEGKI--NVSS- 444
Query: 572 LSILLRLRQICTNLAL 587
LS + L+++C + AL
Sbjct: 445 LSSITSLKKLCNHPAL 460
Score = 65 (27.9 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 233 VNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
V L + T +R G I AD+MGLGKTL ++L+
Sbjct: 159 VKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLM 195
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 255 (94.8 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1025 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1141
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1142 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1201
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1202 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1242
Score = 182 (69.1 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 799 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 855
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 856 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 912
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 913 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 972
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 973 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1028
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1029 NTIMQLRKICNH 1040
Score = 64 (27.6 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 767 GILADEMGLGKTIQTIALI 785
Score = 37 (18.1 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 1342 LTEKQWLKAIEEGTLEEIEEEVRQKK 1367
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 255 (94.8 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1149
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1150 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1209
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1210 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1250
Score = 182 (69.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 863
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 864 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 920
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 921 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 980
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 981 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1037 NTIMQLRKICNH 1048
Score = 64 (27.6 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 37 (18.1 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKK 1375
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 255 (94.8 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1149
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1150 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1209
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1210 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1250
Score = 182 (69.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 863
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 864 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 920
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 921 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 980
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 981 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1037 NTIMQLRKICNH 1048
Score = 64 (27.6 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 37 (18.1 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKK 1375
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 255 (94.8 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1149
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1150 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1209
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1210 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1250
Score = 182 (69.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 863
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 864 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 920
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 921 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 980
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 981 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1037 NTIMQLRKICNH 1048
Score = 64 (27.6 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 37 (18.1 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKK 1375
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 255 (94.8 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1149
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1150 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1209
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1210 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1250
Score = 182 (69.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 863
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 864 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 920
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 921 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 980
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 981 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1037 NTIMQLRKICNH 1048
Score = 64 (27.6 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 37 (18.1 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 1350 LTEKQWLKAIEEGTLEEIEEEVRQKK 1375
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 255 (94.8 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1149
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1150 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1209
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1210 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1250
Score = 182 (69.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 863
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 864 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 920
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 921 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 980
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 981 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1037 NTIMQLRKICNH 1048
Score = 64 (27.6 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 255 (94.8 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1149
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1150 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1209
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1210 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1250
Score = 182 (69.1 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 863
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 864 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 920
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 921 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 980
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 981 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1037 NTIMQLRKICNH 1048
Score = 64 (27.6 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 775 GILADEMGLGKTIQTIALI 793
Score = 37 (18.1 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 1383 LTEKQWLKAIEEGTLEEIEEEVRQKK 1408
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 255 (94.8 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 65/221 (29%), Positives = 107/221 (48%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R +++ F PG
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG-SEY 1149
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1150 FIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1209
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1210 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1250
Score = 182 (69.1 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 863
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 864 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 920
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 921 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 980
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 981 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1037 NTIMQLRKICNH 1048
Score = 64 (27.6 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 251 (93.4 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 76/226 (33%), Positives = 114/226 (50%)
Query: 649 CILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMD----IAGKTLKNFTSSKVSAXXXX 704
C L + CC L D + +S D+D + TL S K+
Sbjct: 411 CDHPRLLSARACCLLNLGTFSAQD-GNEGEDSPDVDHIDQVTDDTLME-ESGKMIFLMDL 468
Query: 705 XXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSM-NAKKRAQVIEEFGNP 763
RD+ T +VFSQ R++L ++E L+ FK LR+DG++ + +R + I F
Sbjct: 469 LKRLRDEGHQT--LVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQN 526
Query: 764 GPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRL 823
+V L + + G G+ LTAA+RV + +P WNPA + QA+DRV+RIGQKE+V + RL
Sbjct: 527 KDY--SVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRL 584
Query: 824 IVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
I ++EE+I Q K L R+ K R S +LR L ++
Sbjct: 585 ITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI 630
Score = 164 (62.8 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 47/153 (30%), Positives = 82/153 (53%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM-LKTYM--Y 382
DD GK+V ++ S + L++ P ++ +TW+ + + T PGM +KT+
Sbjct: 122 DDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWT-PGMRVKTFHGPS 180
Query: 383 YGDRTQDVEELKMYD-LVLTTYSTLAIEESWLES-PVKKIEWWRVILDEAHVIKNANAQQ 440
+RT+++ ++ + +++TTY L L S ++ W VILDEAH IK ++ +
Sbjct: 181 KDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKS 240
Query: 441 SRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAF 473
+ + A R ++TGTPIQN +L+SL F
Sbjct: 241 AICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
Score = 81 (33.6 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 210 GWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
G L+ RE +L F +K G + L + + D R +GGI ADDMGLGKT+ +++ +
Sbjct: 85 GLLLYRELHNQL--FEHQKEG--IAFLYSLYRDGR----KGGILADDMGLGKTVQIIAFL 136
Query: 270 A 270
+
Sbjct: 137 S 137
Score = 48 (22.0 bits), Expect = 5.0e-29, Sum P(3) = 5.0e-29
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 197 IKSELFVHQKEGLGWL 212
+ ++LF HQKEG+ +L
Sbjct: 92 LHNQLFEHQKEGIAFL 107
Score = 37 (18.1 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 657 TKPCCPLCRHPLLQSDLFSSPPESSDMDIAGK 688
TK CP P Q S + + DI+ K
Sbjct: 740 TKKKCPKLNKPQPQPSPLLSTHHTQEEDISSK 771
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 227 (85.0 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 54/156 (34%), Positives = 89/156 (57%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
KK + V+FSQF ML ++E L+ + +RLDG +R +I+EF +
Sbjct: 844 KKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMD--IFI 901
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++VK+++LI + +IE
Sbjct: 902 FLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTIE 961
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
E +L++ +K +L ++ D+ + D +L
Sbjct: 962 ESMLKISQQKLRLEQDMTTNDTGDEGTIPLDMATLL 997
Score = 211 (79.3 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 72/291 (24%), Positives = 146/291 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ------DV-EELKMYDLVLTTYST 405
L+V P S WI + + P M +YYG + + D+ ++ +++++TTY+
Sbjct: 526 LVVVPASTMDNWIREFNQWC-PSM-NILLYYGSQEERKHLRYDILNKVVEFNVIVTTYNC 583
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI + S ++++ + DE H++KN +A + + + LNA+ R ++TGTP+QN
Sbjct: 584 -AISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLL 642
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS +K + S + Q ++ ++ + +M LRR K
Sbjct: 643 ELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKS 702
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ L L PK + + ++S ++ +LY +L K K + + +N S + ++++ L
Sbjct: 703 EVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSID------ATEKN-SELCNVMMHL 755
Query: 579 RQICTNLAL----CPSDVRSIIPSNTIEDVSN---NPDLLKKLVEVLQDGE 622
R++ + L +D + +++ ++ NPDL+ + +EV+ D E
Sbjct: 756 RKMANHPLLHRQYYTADRLRTMSKLMLKEPTHCDANPDLIFEDMEVMTDFE 806
Score = 55 (24.4 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 252 IFADDMGLGKTLTLLSLIA 270
I AD+MGLGKT+ ++ +A
Sbjct: 496 ILADEMGLGKTVQAIAFLA 514
Score = 40 (19.1 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 427 LDEAHVIKNANAQQSRTVTNLNAKRRW 453
LDE ++I + + ++++ +T L W
Sbjct: 374 LDELYLIPHCSHKKAQKITELRPFSSW 400
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 221 (82.9 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 49/126 (38%), Positives = 73/126 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F+Q K+L +LE+ L G + LRLDG+ ++R + E F N P +L S ++
Sbjct: 1011 LIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKI-PVFIL-STRS 1068
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NLT A V + WNP ++ QA DR HRIGQ DV I RLI ++E +L
Sbjct: 1069 GGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRA 1128
Query: 838 DRKKKL 843
++K+ L
Sbjct: 1129 NQKRML 1134
Score = 209 (78.6 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 69/265 (26%), Positives = 130/265 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK------MYDLVLTTYSTL 406
LI+ P SV W + ++ +PG K YYG+ + E+ + + +T+Y L
Sbjct: 500 LIIVPTSVMLNWEMEFKKF-LPGF-KILTYYGNPQERKEKRSGWYKPDTWHVCITSYQ-L 556
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ P ++ +W +ILDEAH IKN +Q+ +++ N NA+ R ++TGTP+QN +
Sbjct: 557 VLQD---HQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVE 613
Query: 467 LFSLMAFLQ-------FEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTIS-LRRTKD 518
L+SL+ FL F+ +Q +P+ + +G M+T++ L R
Sbjct: 614 LWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLR 673
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMR-----NYSTVLS 573
L+ +EK + E +Y +L + + + D+IN N+ ++++
Sbjct: 674 PYLLRRLKTEVEKQMP--AKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNFMSIIN 731
Query: 574 ILLRLRQICTNLALCPSDVRSIIPS 598
L++LR++C + L + R I+ S
Sbjct: 732 CLMQLRKVCNHPNL--HEERPIVTS 754
Score = 67 (28.6 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI AD+MGLGKT+ ++L+A C
Sbjct: 468 GILADEMGLGKTIQTIALLAHLAC 491
Score = 38 (18.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDV 390
W+T L + G+L M G Q +
Sbjct: 457 WLTALHDSNTNGILADEMGLGKTIQTI 483
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 217 (81.4 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 56/157 (35%), Positives = 90/157 (57%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + RLDGS R +I++F V
Sbjct: 795 KEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQD--IFV 852
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S +A G G+NLT+A+ V L + NP ++QA R HR+GQ + VK+++LI ++SIE
Sbjct: 853 FLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDSIE 912
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILM 867
+ +L + +RK KL +E + ++ + DD+ L+
Sbjct: 913 DTMLRIGERKLKLEQEMTATQDGEE-DTLPDDMTTLL 948
Score = 210 (79.0 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 81/287 (28%), Positives = 132/287 (45%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-------RTQDVEELKMYDLVLTTYST 405
LI P S W+ +L P K +YYG R + + ++ Y+++++TY+
Sbjct: 481 LITVPASTLDNWVRELNLWC-PSF-KVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYN- 537
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
LAI S S K++ + DE H++KN N+ + R + +NAK R ++TGTP+QN
Sbjct: 538 LAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLL 597
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
+L SL+ F+ FS + + + R ++ +++M LRR K +
Sbjct: 598 ELMSLLNFIMPNMFSSSTSQIAKMFSMKSSEEQSSFERDRITHAKLIMKPFILRRVKSEV 657
Query: 521 LIGLQPKTIEKYYVELSLEERKLYDELEGKAK----GVVQDYINAGSLMRNYSTVLSILL 576
L L K + + +S +++LY L K K G ++ N +R S LL
Sbjct: 658 LKQLPAKEEQVEFCAMSERQQELYSALLHKLKHSSNGEKRELTNVMMQLRKMSN--HPLL 715
Query: 577 RLRQICTNLAL-CPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGE 622
RQ T L S + PS+ D P L+K+ +EVL D E
Sbjct: 716 H-RQFYTTEKLKAMSKLMLKEPSHRDAD----PALIKEDMEVLSDFE 757
Score = 65 (27.9 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ +S +A
Sbjct: 450 GILADEMGLGKTIQAISFLA 469
Score = 42 (19.8 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEW 422
W+ L ++ + G+L M G Q + L +Y + + S L++ V+++
Sbjct: 439 WLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQEGNHGPHLITVPASTLDNWVRELNL 498
Query: 423 W 423
W
Sbjct: 499 W 499
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 240 (89.5 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 56/149 (37%), Positives = 81/149 (54%)
Query: 718 VVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
++F+Q + ML ++E L LR+DGS+ KR ++ +F N P VLL +
Sbjct: 1783 LIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHSIVNQF-NSDPT-IDVLLLT 1840
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
G G+NLT A V LE WNP + QAMDR HRIGQK+ V + RLI ++EE+I+
Sbjct: 1841 THVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITSGTLEEKIM 1900
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDL 863
LQ K +A + +ST++L
Sbjct: 1901 GLQKFKLNIANTVINHDNSSLQTMSTNEL 1929
Score = 200 (75.5 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 63/243 (25%), Positives = 112/243 (46%)
Query: 318 GKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGML 377
GK +T+ D+ + V K + +L++CPPS+ W ++++ +
Sbjct: 1407 GKTLQTICIIAGDDYH-RRVNYQEKGTPDFAPLPSLVICPPSLVGHWFYEIKKFCSDSTM 1465
Query: 378 KTYMYYG---DRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIK 434
K Y G +R + K +++++ +Y + + L ++ + ILDE H+IK
Sbjct: 1466 KPMTYMGNPSERQAQRSKFKDHNVLIMSYDIMRNDIDILS----EMHFNYCILDEGHIIK 1521
Query: 435 NANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRP-L 493
NA + ++ L + R +++GTPIQN +L+SL FL + + L +P L
Sbjct: 1522 NAKTKLTQAAKRLQSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLFNELYSKPIL 1581
Query: 494 AQGNRK--------GLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEERK 542
A + K G+ ++ L + LRR K+ L L PK I+ Y LS + +
Sbjct: 1582 ASKDPKCSTKDQEAGVLAMEALHRQVLPFLLRRLKEDVLADLPPKIIQDRYCNLSPLQIR 1641
Query: 543 LYD 545
LYD
Sbjct: 1642 LYD 1644
Score = 68 (29.0 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 251 GIFADDMGLGKTLTLLSLIALD 272
GI DDMGLGKTL + +IA D
Sbjct: 1398 GILCDDMGLGKTLQTICIIAGD 1419
Score = 42 (19.8 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 324 VNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSV 360
V+ K+ +V+ + +LN F G ++ I+ PS+
Sbjct: 863 VSNKLVSDVRVLASSLLNVGVDFSGVELLNILSNPSI 899
Score = 41 (19.5 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 197 IKSELFVHQKEGLGWL 212
I +EL +Q++G+ WL
Sbjct: 1373 INTELRKYQQDGVNWL 1388
Score = 41 (19.5 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K K I QP+ K +E L+ K Y++ E + D + + L+
Sbjct: 300 KTKQHITEQPQDSGKIVMESILDVDKAYNQDEWPFTSIFNDLV-IDLFSPTWEIRHGSLV 358
Query: 577 RLRQIC 582
LR+IC
Sbjct: 359 GLREIC 364
Score = 40 (19.1 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 526 PKTIEKYYVELSLEERKLYDELEGKAKGVVQDY---INAGSLMRNY 568
P+ +++ ++ EERK ++L +K V++Y I + +R Y
Sbjct: 1337 PEGLDQDLIQQKQEERKFLEQLLDGSK--VENYPLPIRINTELRKY 1380
Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 597 PSNTIEDVSNNPDLLKKLVEV 617
PSNTIE + + + KK + V
Sbjct: 939 PSNTIELIIDQLEARKKTILV 959
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 223 (83.6 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 79/291 (27%), Positives = 135/291 (46%)
Query: 339 MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDVEE 392
+L + K+ +LI+CP SV S W +LE PG L Y G++ Q+++E
Sbjct: 85 LLYLTKKLTNKERSLILCPLSVLSNWKEELERFA-PG-LSFVTYVGNKEERYKLQQNLKE 142
Query: 393 LKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRR 452
+ ++LTTY + ++L K +W +++DEAH +KN N+ T+T L
Sbjct: 143 QSHFRVLLTTYEICLKDAAFL----KFFDWAALVVDEAHRLKNQNSLLYETLTELPVGFS 198
Query: 453 WVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTIS 512
++TGTPIQN +L+SL++F++ + F K + + + + L L+
Sbjct: 199 LLLTGTPIQNSLQELYSLLSFIEPDIFPRKQVKEFVEYYQAVEKESEPAKELHNLLQPFL 258
Query: 513 LRRTKDKGLIGLQPKTIEKY-YVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
LRR K + L PK +E Y +S +RK Y + K + +++N
Sbjct: 259 LRRVKSEVTADL-PKKVEVVLYHGMSALQRKYYKAILTKDLDAFEGGTGRKVMLQN---- 313
Query: 572 LSILLRLRQICTNLALCPS-DVRSIIPSNTIEDVSNNPDLLKKLVEVLQDG 621
+L++LR+ + L + + I + S LL KL+ L DG
Sbjct: 314 --VLIQLRKCVAHPYLFNGVEPEPFEIGDHIVEASGKLCLLDKLLSFLYDG 362
Score = 211 (79.3 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 51/127 (40%), Positives = 75/127 (59%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASLK 776
++FSQ K+L +L++ + G+ RLDGS+ ++R I+ FG P V L S +
Sbjct: 367 LLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNFGQQ----PIFVFLLSTR 422
Query: 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
A G G+NLTAA V + +NP + QA+ R HRIGQ + VKI+RLI R+++EE I
Sbjct: 423 AGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRR 482
Query: 837 QDRKKKL 843
K +L
Sbjct: 483 AASKLRL 489
Score = 55 (24.4 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I D+MGLGKT +SL+
Sbjct: 66 GCILGDEMGLGKTCQTISLL 85
Score = 40 (19.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 554 VVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRS 594
++ D + G + S +L + +L +L LCP V S
Sbjct: 68 ILGDEMGLGKTCQTISLLLYLTKKLTNKERSLILCPLSVLS 108
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 280 (103.6 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 75/214 (35%), Positives = 112/214 (52%)
Query: 663 LCRHPLLQSDLFSSPPESSD--MDIA-----GKTLKNFTSSKVSAXXXXXXXXRDKKPTT 715
LC HP L D + + +DI K L+ S K+ R + +
Sbjct: 457 LCNHPALIYDKCVEEEDGFEGTLDIFPPGYNSKALEPQLSGKMLVLDYILAVTRSRS-SD 515
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ +A + +RLDG+M+ KKRA+V+E F NP +L+S
Sbjct: 516 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSS- 574
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I +
Sbjct: 575 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 634
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q KK L+ + +R S +L+ L +L
Sbjct: 635 RQSHKKALSSCVVDEEQDVERHFSLGELKELFTL 668
Score = 137 (53.3 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 51/176 (28%), Positives = 86/176 (48%)
Query: 425 VILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSY 484
VI DE H +KN+ Q + + +LN RR +++GTPIQN + FSL+ F+
Sbjct: 294 VICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 353
Query: 485 WQSLIQRPLAQGN---------RKGLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKY 532
++ + P+ +G R G RL+ L S ++ +RRT D L P IE+
Sbjct: 354 FKKHFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDI-LSKYLPVKIEQV 412
Query: 533 YV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
L+ + +LY +AK + + G + + S+ LS + L+++C + AL
Sbjct: 413 VCCRLTPLQIELYKRFLRQAKPAEE--LREGKM--SVSS-LSSITSLKKLCNHPAL 463
Score = 64 (27.6 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 241 TDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
T +R G I AD+MGLGKTL ++L+
Sbjct: 170 TSRRIPGSHGCIMADEMGLGKTLQCITLM 198
Score = 37 (18.1 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELP 222
++ L HQ+EG+ +L S +P
Sbjct: 149 ILSKVLRPHQREGVKFLWECVTSRRIP 175
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 213 (80.0 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKM---------YDLVLTTY 403
L+VCP SV +TW++++ T G L+ Y+G +++ E L+ +++V+TTY
Sbjct: 43 LVVCPLSVLNTWMSEISRWTT-G-LRPMAYHGG-SEERENLRTCFRQQGAEPWNIVVTTY 99
Query: 404 STLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNG 463
TL + W +K W V+LDE H IKN+ +++++ V L ++ R V+TGTPIQN
Sbjct: 100 ETLC-SDLWF---FQKTLWAHVVLDEGHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQND 155
Query: 464 SFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQGNRKG--LSRLQVLMSTISLRRTKD 518
+L+S++ +L F P + K + + L G LS + + + LRRTK
Sbjct: 156 LTELWSILHWLYPDVFVPATAKLFENAF---SLTDGKFDSIFLSHITRFLKVVMLRRTKC 212
Query: 519 KGLIGLQ--PKTIEKYYVELS 537
IGL PK + V L+
Sbjct: 213 DSQIGLDLPPKKETVFSVPLT 233
Score = 193 (73.0 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
Identities = 56/163 (34%), Positives = 85/163 (52%)
Query: 716 KSVVFSQFRKMLILLEEPLQAA----GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVL 771
K ++FS F + L L E+ L+ FK RLDGS ++ R + F N P V
Sbjct: 350 KVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQND-PRY-MVF 407
Query: 772 LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831
L S +A G G+NL ++S V L+ WNP V QA RVHRIGQ + V+I R+ + ++E+
Sbjct: 408 LLSTRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIFRIHAKGTVED 467
Query: 832 RILELQDRKKKLAREAFRRKGK------DQREVSTDDLRILMS 868
++ D+K LA + G D E + D++ ++ S
Sbjct: 468 QMRRRMDKKAYLADKVMGEFGNNITHHTDLEETTEDEICLIPS 510
Score = 77 (32.2 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
GGI ADDMGLGKTL LSL
Sbjct: 10 GGILADDMGLGKTLQALSL 28
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 278 (102.9 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
Identities = 73/214 (34%), Positives = 112/214 (52%)
Query: 663 LCRHPLL-------QSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTT 715
LC HP L + D F+ + + K L+ S K+ R + +
Sbjct: 456 LCNHPALIYDKCVEEEDGFAGALDFFPPGYSSKALEPQLSGKMLVLDYILAVTRSRS-SD 514
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ +A + +RLDG+M+ KKRA+V+E F +P +L+S
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS- 573
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I +
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q KK L+ + +R S +L+ L +L
Sbjct: 634 RQSHKKALSSCVVDEEQDVERHFSLGELKELFTL 667
Score = 139 (54.0 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
Identities = 51/176 (28%), Positives = 86/176 (48%)
Query: 425 VILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSY 484
VI DE H +KN+ Q + + +LN RR +++GTPIQN + FSL+ F+
Sbjct: 293 VICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGLLGTAHE 352
Query: 485 WQSLIQRPLAQGN---------RKGLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKY 532
++ + P+ +G R G RL+ L S ++ +RRT D L P IE+
Sbjct: 353 FKKRFELPILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDI-LSKYLPVKIEQV 411
Query: 533 YV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
L+ + +LY +AK + + G + + S+ LS + L+++C + AL
Sbjct: 412 VCCRLTPLQTELYKRFLRQAKPAEE--LREGKM--SVSS-LSSITSLKKLCNHPAL 462
Score = 64 (27.6 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 241 TDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
T +R G I AD+MGLGKTL ++L+
Sbjct: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLM 197
Score = 38 (18.4 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELP 222
V+ L HQ+EG+ +L S +P
Sbjct: 148 VLSKVLRPHQREGVRFLWECVTSRRIP 174
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 240 (89.5 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 54/128 (42%), Positives = 77/128 (60%)
Query: 716 KSVVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772
++++F Q + ML ++E+ L LRLDGS+ A +R ++ F N P +LL
Sbjct: 1716 RALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNF-NSDPSIDVLLL 1774
Query: 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEER 832
++ G G+NLT A V +E WNP + QAMDR HRIGQK+ V + RLI RNS+EE+
Sbjct: 1775 TTM-VGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEK 1833
Query: 833 ILELQDRK 840
I+ LQ K
Sbjct: 1834 IMGLQKFK 1841
Score = 204 (76.9 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 67/263 (25%), Positives = 123/263 (46%)
Query: 340 LNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPG-MLKTYMYYG---DRTQDVEEL-K 394
+++ ++ + +L++CPP++ W+ ++E+ G +L+ YYG R + ++
Sbjct: 1395 MHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGT 1454
Query: 395 MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
+LV+ +Y T+ + + I + +LDE H+IKN + S+ + L A R +
Sbjct: 1455 KCNLVVASYDTVRKDIDFFSG----IHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLI 1510
Query: 455 VTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPL-----AQGNRK----GLSRLQ 505
++GTPIQN +L+SL FL + + RP+ A+ + K G+ ++
Sbjct: 1511 LSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAME 1570
Query: 506 VLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGK-AKGVVQ---DY 558
L + LRR K+ L L PK + ELS + +LY++ K K + D
Sbjct: 1571 ALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDS 1630
Query: 559 INAGSLMRNYSTVLSILLRLRQI 581
+A + N S I LR +
Sbjct: 1631 SSASMVTENLSAKTHIFQALRYL 1653
Score = 66 (28.3 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 251 GIFADDMGLGKTLTLLSLIALD 272
GI DDMGLGKTL + ++A D
Sbjct: 1372 GILCDDMGLGKTLQTICILAGD 1393
Score = 37 (18.1 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 197 IKSELFVHQKEGLGWL 212
I EL +Q+ G+ WL
Sbjct: 1347 ISVELRCYQQAGINWL 1362
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 242 (90.2 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 58/158 (36%), Positives = 87/158 (55%)
Query: 709 RDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
+ +P + ++FSQF ++L +LE L + LRLDGS + R Q+I++F
Sbjct: 775 KKSRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNE--NY 832
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
V L S K+ G G+NLT A+ V L + +NP + QA DR HR+GQ V + RLI +N+
Sbjct: 833 KVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNT 892
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
IEE I L + K L K Q+E+S + ++ L
Sbjct: 893 IEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKSL 930
Score = 179 (68.1 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 83/324 (25%), Positives = 145/324 (44%)
Query: 320 KHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM 376
K K D+ GK+ +++ +S K I L+V P S W+ + E+ P
Sbjct: 430 KAKLSGILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEKFC-PS- 487
Query: 377 LKTYMYYGDRTQDVEELKM-----YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAH 431
L+ Y G +++ + + +D+++TTY LA S ++K + I DE H
Sbjct: 488 LRVESYSGTQSERINKRYYLMDTDFDVLVTTYQ-LASGSRDDRSFLRKQRFDISIFDEGH 546
Query: 432 VIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQR 491
+KN +++ + + N+ A R ++TGTP+QN +L SL+AF+ + F +I +
Sbjct: 547 YLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIYK 606
Query: 492 --PLAQGN-------RKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERK 542
+ G+ ++ +SR + +M+ LRR K+ L L PK Y + +
Sbjct: 607 IKTTSDGDIERAYLSQERISRAKTIMNPFILRRRKENVLSDLPPKIQHVEYCHMEETQLS 666
Query: 543 LY-DELEGKAKGVVQDYINAGS---LMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPS 598
LY LE +++ +NA LM+ L LL Q NL + I+
Sbjct: 667 LYLSVLE------LKNLVNANRENILMQLRKAALHQLLFRSQY--NLETLSLMSKRILRE 718
Query: 599 NTIEDVSNNPDLLKKLVEVLQDGE 622
+ D NP + + +EV+ D E
Sbjct: 719 DAYLDA--NPQYIFEDMEVMSDFE 740
Score = 67 (28.6 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGV 277
GI AD+MGLGKT ++S +A K G+
Sbjct: 435 GILADEMGLGKTCQVISFLASLKEKGI 461
Score = 38 (18.4 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 490 QRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
+R + +G ++G + + + +S T + L+G P
Sbjct: 196 KRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQSP 232
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 241 (89.9 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
Identities = 67/202 (33%), Positives = 100/202 (49%)
Query: 663 LCRHPLL----QSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSV 718
+C HP L + + + D ++ +K+ SSK+ R K + +
Sbjct: 1175 VCNHPFLIPGAEESIVKQEKIAGDEELGELLVKS--SSKL--VLVDKLLQRLKAEGHQVL 1230
Query: 719 VFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKAS 778
+FSQ + L +LE+ LQ + RLDGS+ ++ R I+ F + G V L S +A
Sbjct: 1231 IFSQMVESLNILEDYLQYREYTYERLDGSIKSEVRQASIDRFQDKG-ANRFVFLLSTRAG 1289
Query: 779 GAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQD 838
G G+NLT A V L + WNP + QA R HRIGQ +VK+ RLI RN+ EE + E
Sbjct: 1290 GVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEYLFECAT 1349
Query: 839 RKKKLAREAFRRKGKDQREVST 860
KK L KD+++ +T
Sbjct: 1350 -KKLLLDHIVLSTNKDKKQTNT 1370
Score = 208 (78.3 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
Identities = 73/290 (25%), Positives = 139/290 (47%)
Query: 335 KSVGMLNKSSSFMG-KKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDR-TQDV-- 390
+S+ L S +G K L+V P S W ++ + T +KT ++YG + T+
Sbjct: 932 QSIAFLQYLSQSVGIKGPFLVVAPLSTLGNWHKEILKWT---KMKTLVFYGSQETRGFIS 988
Query: 391 -EELK-----MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV 444
E K +++++LTTY T+ + S S V+ + W +ILDE H IKN ++ +
Sbjct: 989 KYEFKHKDTYLFEVLLTTYETIMSDHS---SFVR-VPWRALILDEGHRIKNDKSKVLSKL 1044
Query: 445 TNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRL 504
++ + ++TGTP+QN +L++++ FL + F+ Q + +S+L
Sbjct: 1045 KSIKTEHSIILTGTPLQNDMKELWTMLNFLDPDKFNS---CQEFLDEYSDLKEESQVSKL 1101
Query: 505 QVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSL 564
L+S LRR K+ + + K VELS ++ Y + + + ++++ G
Sbjct: 1102 HQLLSPYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILERNR----EFLSRGIK 1157
Query: 565 MR-NYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKK 613
+ N + +I++++R++C + L P SI+ I +LL K
Sbjct: 1158 QKTNLPKLSNIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEELGELLVK 1207
Score = 57 (25.1 bits), Expect = 4.9e-32, Sum P(3) = 4.9e-32
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 249 RGGIFADDMGLGKTLTLLSLIA-LDKCAGV 277
R + AD+MGLGKT+ ++ + L + G+
Sbjct: 917 RSSLLADEMGLGKTIQSIAFLQYLSQSVGI 946
Score = 40 (19.1 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 16/89 (17%), Positives = 38/89 (42%)
Query: 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
+SG G + + + ++ WN + +++ + ++G KI + S+ + E+
Sbjct: 1707 SSGGGSSGQSTNAQSIINASWNKSQKDKFKSILLKVGFHRWKKIQSELATQSVLKSPGEI 1766
Query: 837 QDRKKKLAREAFRRKG---KDQREVSTDD 862
Q + +++G KD + DD
Sbjct: 1767 QSVSESFLEVGLKQQGSIIKDFYDSLLDD 1795
Score = 38 (18.4 bits), Expect = 4.8e-11, Sum P(3) = 4.8e-11
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 682 DMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEP 733
D G T+ F S+ S K KS +FS K L+ + P
Sbjct: 2827 DASYNGTTVPYFLSTTTSFESLFHRFCEKVKIDRKSTIFSYEGKRLLNEQTP 2878
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 217 (81.4 bits), Expect = 5.6e-32, Sum P(3) = 5.6e-32
Identities = 85/320 (26%), Positives = 152/320 (47%)
Query: 320 KHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM 376
+HK D+ GK++ + + K I LI P S W+ +L P
Sbjct: 464 QHKLSGILADEMGLGKTIQAIAFLAHLYEKGIKGPHLITVPSSTLDNWVRELGLWC-PS- 521
Query: 377 LKTYMYYG---DRT---QDV-EELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDE 429
LK +YYG DR QD+ L ++++++TY+ L I S +K++ + DE
Sbjct: 522 LKVLIYYGSVEDRKYLRQDILTGLIDFNIIVSTYN-LTIGNDHDRSLFRKLKLKYAVFDE 580
Query: 430 AHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS-----VKSY 484
H++KN N+ + R + +NA+ R ++TGTP+QN +L SL+ F+ FS +
Sbjct: 581 GHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNLLELMSLLNFIMPSMFSSSTSQISKM 640
Query: 485 WQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYV-ELSLEERKL 543
+ + + ++ +++ +++M LRR K + L L PK +EK + +S + KL
Sbjct: 641 FSTRSSEEESSFHKDRIAQARLIMKPFILRRVKSEVLKELPPK-MEKIEMCPMSDAQHKL 699
Query: 544 YDELEGKAKGVVQ-DYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIE 602
YD L + K D ++M + + L RQ T+ L ++++ T
Sbjct: 700 YDILFKRLKKTPNGDKRELCNVMMQLRKMANHPLLHRQYYTSDKLAAMS-KAMLKEPTHY 758
Query: 603 DVSNNPDLLKKLVEVLQDGE 622
D +P L+++ +EV+ D E
Sbjct: 759 DA--DPALIQEDMEVMSDFE 776
Score = 210 (79.0 bits), Expect = 5.6e-32, Sum P(3) = 5.6e-32
Identities = 52/144 (36%), Positives = 86/144 (59%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML ++E L+ + +RLDGS +R +I+++ N P V
Sbjct: 814 KEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKY-NTNPE-IFV 871
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S +A G G+NL +A+ V L + NP ++QA DR HR+GQ V++++LI ++SIE
Sbjct: 872 FLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTVQVIKLISKDSIE 931
Query: 831 ERILELQDRKKKLAREAFRRKGKD 854
+ +L + K KL ++ +G+D
Sbjct: 932 DCMLRVGQEKLKLEQDMTTDEGED 955
Score = 62 (26.9 bits), Expect = 5.6e-32, Sum P(3) = 5.6e-32
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 469 GILADEMGLGKTIQAIAFLA 488
Score = 55 (24.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEW 422
W+ L +H + G+L M G Q + L +Y+ + + + S L++ V+++
Sbjct: 458 WLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYEKGIKGPHLITVPSSTLDNWVRELGL 517
Query: 423 W 423
W
Sbjct: 518 W 518
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 241 (89.9 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 65/203 (32%), Positives = 101/203 (49%)
Query: 662 PLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFS 721
P+ R PLL S F + S ++ ++ F + K + +++
Sbjct: 1396 PIPRKPLLPS--FGIA-KGSYSNVRIPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYF 1452
Query: 722 QFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAG 781
Q +M+ L+EE L +K LRLDGS +R ++ E+ P V L S +A G G
Sbjct: 1453 QMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEW-QTRPE-LFVFLLSTRAGGLG 1510
Query: 782 VNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841
+NLTAA V + WNP+++ QAMDR HRIGQ++ V + R I R +IEERI+ K+
Sbjct: 1511 INLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKE 1570
Query: 842 KLAREAFRRKGKDQREVSTDDLR 864
++ + G + R DL+
Sbjct: 1571 EVQKVVI--SGGETRPTKQMDLK 1591
Score = 197 (74.4 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 68/266 (25%), Positives = 131/266 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKM--------YD------L 398
L++ P S W ++ VP LK Y+G T+D + L+ YD +
Sbjct: 895 LVIAPASTLHNWQQEITRF-VP-KLKCIPYWGS-TKDRKILRKFWCRKNMTYDENSPFHV 951
Query: 399 VLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
V+T+Y + ++ + +S ++W +ILDEA IK++++ + +++ + R ++TGT
Sbjct: 952 VVTSYQLVVLDAQYFQS----VKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGT 1007
Query: 459 PIQNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQGN----RKGLSRLQVLMSTI 511
PIQN +L++L+ F+ F+ + S W S AQ N + L RL +++
Sbjct: 1008 PIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPF 1067
Query: 512 SLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAK--GVVQDYINAGSLMRNYS 569
LRR K L K ++ Y +L+ ++ LY L + +++ I G +
Sbjct: 1068 MLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGD--DTVA 1125
Query: 570 TVLSILLRLRQICTNLALCP-SDVRS 594
++++++++ R++C + L DVRS
Sbjct: 1126 SIMNLVMQFRKVCNHPDLFEREDVRS 1151
Score = 63 (27.2 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ +S++A
Sbjct: 863 GILADEMGLGKTVQSISVMA 882
Score = 41 (19.5 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 320 KHKTVNTKMDDNVKGKSVGMLNKS--SSFMGKKITLIVCPPSVFS----TWITQLEEHTV 373
+ ++ N D +G+ + N + ++F K+ +++C + W+ L E +
Sbjct: 803 RQQSPNNSSSDMNEGE-MNFQNPTLVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGI 861
Query: 374 PGMLKTYMYYGDRTQDV 390
G+L M G Q +
Sbjct: 862 NGILADEMGLGKTVQSI 878
Score = 40 (19.1 bits), Expect = 9.3e-14, Sum P(3) = 9.3e-14
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 663 LCRH-PLLQSDLFSSPPES 680
L H P Q DLF +P +S
Sbjct: 126 LSNHSPATQPDLFETPAQS 144
Score = 38 (18.4 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 220 ELPPFWEEKGGGF 232
++P +W+++G F
Sbjct: 48 QIPLYWQQRGNEF 60
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 236 (88.1 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 54/133 (40%), Positives = 76/133 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
+++ Q +M+ L+EE L +K RLDGS + R + +F P V L S +A
Sbjct: 1341 LLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADF-QQRPD-IFVFLLSTRA 1398
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NLTAA V + WNP ++ QAMDR HR+GQ V + RLI R++IEERI
Sbjct: 1399 GGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEERI---- 1454
Query: 838 DRKKKLAREAFRR 850
RK+ L +E +R
Sbjct: 1455 -RKRALQKEEVQR 1466
Score = 201 (75.8 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 62/255 (24%), Positives = 126/255 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL-KMYD-------------L 398
L++ P S W ++ + VP +K Y+G+ +D + L K +D +
Sbjct: 851 LVIAPASTLHNWQQEITKF-VPN-IKVLPYWGN-AKDRKILRKFWDRKHITYTKESEFHV 907
Query: 399 VLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
++T+Y + ++ + + K++W +ILDEA IK++ + + +++ + + R ++TGT
Sbjct: 908 LVTSYQLVVLDAQYFQ----KVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGT 963
Query: 459 PIQNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQGNRK----GLSRLQVLMSTI 511
PIQN +L++L+ F+ F+ S W S AQ N K L RL +++
Sbjct: 964 PIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPF 1023
Query: 512 SLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSL--MRNYS 569
LRR K L K + + +L+ +R LY L + + D I ++ + +
Sbjct: 1024 MLRRVKKHVQQELGDKVEKDVFCDLTYRQRALYTNLRNRVS--IMDLIEKAAVGDETDST 1081
Query: 570 TVLSILLRLRQICTN 584
T+++++++ R++C +
Sbjct: 1082 TLMNLVMQFRKVCNH 1096
Score = 64 (27.6 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ +S++A
Sbjct: 819 GILADEMGLGKTIQSISVMA 838
Score = 40 (19.1 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 27/128 (21%), Positives = 43/128 (33%)
Query: 270 ALDKCAGVAPGLTGTNSLDLNEVEDEEXXXXXXXXXXXXXXXXXXXARG--KKHKTVNTK 327
A+D G +T LD + +D AR +K+
Sbjct: 710 AMDLTPGAGAKVTNFEDLDFDAEDDTALRQAAMANAQSAVQKAQERARAFDDPNKSTMDT 769
Query: 328 MDD---NVKGK-SVGMLNKSSSFMGKKITLIVCPPSVFS-TWITQLEEHTVPGMLKTYMY 382
MDD N + S+G + S M +T + + W+ L E + G+L M
Sbjct: 770 MDDSELNFQNPTSLGDIEISQPTM---LTAKLKEYQLKGLNWLVNLYEQGINGILADEMG 826
Query: 383 YGDRTQDV 390
G Q +
Sbjct: 827 LGKTIQSI 834
Score = 38 (18.4 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 196 VIKSELFVHQKEGLGWLV 213
++ ++L +Q +GL WLV
Sbjct: 793 MLTAKLKEYQLKGLNWLV 810
Score = 38 (18.4 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 740 KLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
+L+ + S+ ++ VIE P P + L S
Sbjct: 1211 ELMNVSRSVFEQEGLNVIEPCAGPAASAPPITLVS 1245
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 239 (89.2 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 57/148 (38%), Positives = 85/148 (57%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ ++ ++FSQF +ML +LE+ L +RLDGS + R +I++F TV
Sbjct: 937 KEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEED--VTV 994
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NL A+ V L + +NP + QA DR HR+GQ +V ++RLI N+IE
Sbjct: 995 FLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIE 1054
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREV 858
E I +L + K L + GKD+ E+
Sbjct: 1055 EYIQKLANTKLALDM-SLSSDGKDREEI 1081
Score = 188 (71.2 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 63/211 (29%), Positives = 106/211 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD------VEELKM-YDLVLTTYST 405
L+V P S W+ +L P L+ YYG + + +EE ++ YD+++TTY
Sbjct: 602 LVVVPSSTLENWLRELARFC-PS-LRVEPYYGSQQERANIREAIEENEIKYDILVTTYQ- 658
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
LA S +K + + DE H +KN +++ + + NLNA R ++TGTP+QN
Sbjct: 659 LATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLK 718
Query: 466 DLFSLMAFL---QFEP--------FSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLR 514
+L SL+AF+ F+ F K + I++ L R +SR + +M+ LR
Sbjct: 719 ELVSLLAFILPNMFDSDMDDLDVIFKAKPTADADIEQALLSKQR--ISRAKTMMTPFVLR 776
Query: 515 RTKDKGLIGLQPKTIEKYYVELSLEERKLYD 545
R K++ L L KT + +LS + ++Y+
Sbjct: 777 RRKNQVLNDLPKKTQIIEHCKLSENQLEIYN 807
Score = 62 (26.9 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 251 GIFADDMGLGKTLTLLSLIAL 271
GI AD+MGLGKT +++ AL
Sbjct: 571 GILADEMGLGKTCQVVAFFAL 591
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 240 (89.5 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 59/158 (37%), Positives = 94/158 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN----AKKRAQVIEEFGNPGPGGPTVL 771
+++VFSQ K+L ++E L+ FK LR+DG++ +KR Q+ ++ N +V
Sbjct: 481 QTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQ--NKEY---SVF 535
Query: 772 LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831
L + + G G+ LTAA+RV + +P WNPA + QA+DRV+RIGQKE+V + RLI ++EE
Sbjct: 536 LLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEE 595
Query: 832 RILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+I Q K L R+ K R + +L+ L ++
Sbjct: 596 KIYRRQVFKDSLIRQTTGEKKNPFRYFTKQELKELFTV 633
Score = 171 (65.3 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 61/212 (28%), Positives = 102/212 (48%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM-LKTY--MY 382
DD GK+V ++ S + L++ P ++ +TW+ + + T PGM +KT+
Sbjct: 123 DDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVNEFAKWT-PGMRVKTFHGSS 181
Query: 383 YGDRTQDVEELKMYD-LVLTTYSTLAIEESWLES-PVKKIEWWRVILDEAHVIKNANAQQ 440
+RT+ + ++ + +V+TTY L L S + W VILDEAH IK+A+ +
Sbjct: 182 KSERTRSLTRIQQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKS 241
Query: 441 SRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFL-QFEPFSVKSYWQSLIQRPLAQGNRK 499
+ + A R ++TGTP+QN +L+SL F Q ++ + P+ + K
Sbjct: 242 AVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREK 301
Query: 500 ---------GLSRLQVLMSTIS---LRRTKDK 519
GL + LM I LRRTK++
Sbjct: 302 DATPGEKALGLKISENLMEIIKPYFLRRTKEE 333
Score = 84 (34.6 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 210 GWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
G L+ RE E+L F +K G + L + + D R +GGI ADDMGLGKT+ +++ +
Sbjct: 86 GLLLYRELYEKL--FEHQKEG--IAFLYSLYKDGR----KGGILADDMGLGKTVQIIAFL 137
Query: 270 A 270
+
Sbjct: 138 S 138
Score = 45 (20.9 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 200 ELFVHQKEGLGWL 212
+LF HQKEG+ +L
Sbjct: 96 KLFEHQKEGIAFL 108
Score = 38 (18.4 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 590 SDVRSI--IPSNTIEDVSNNPDLLKKLVEVLQD 620
S++ SI +P T+ S L L+E LQD
Sbjct: 445 SNMNSIDHLPDKTLIQESGKMIFLMSLLERLQD 477
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 250 (93.1 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 75/216 (34%), Positives = 105/216 (48%)
Query: 663 LCRHPLLQS--DLFSSPPESSDMDIAG---KTLKNFT---SSKVSAXXXXXXXXRDKKPT 714
LC P L S D P E+ ++ L++F+ S+K+ R +
Sbjct: 590 LCNSPSLLSLKDANEKPSETIAAILSSLPPNLLRHFSPSCSAKIRVLDQLLHYLRTST-S 648
Query: 715 TKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLA 773
K V+ S + L LL L + LRLDGS A+KR ++E+F N P L
Sbjct: 649 EKVVLVSNYTSTLDLLANLLSSLSLPFLRLDGSTPAQKRQSLVEDF-NRHPASTCFAFLL 707
Query: 774 SLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERI 833
S KA G G+NL ASR+ L + WNPA + QAM R+HR GQK I R++++ S+EE+I
Sbjct: 708 SAKAGGTGLNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKHHCHIYRILLQGSLEEKI 767
Query: 834 LELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ Q K LA K + S D+LR L L
Sbjct: 768 WQRQVTKIGLADSVMEHKDS-VAQFSRDELRDLFRL 802
Score = 166 (63.5 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 70/281 (24%), Positives = 127/281 (45%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVEELKMYDLVLTTYSTL- 406
K LIVCP ++ + W + + + +++ R + D K Y +++ Y L
Sbjct: 356 KKALIVCPVTLINNWRREFRKWLGNERIGVFVFDDKRKRLTDFTMGKAYSIMIVGYEKLR 415
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++E I VI DE H +K + + + +LNA +R +++GTPIQN +
Sbjct: 416 SVQEGLARGNGVDI----VIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKE 471
Query: 467 LF------------SLMAFL-QFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISL 513
F S +F+ +FE V+S ++ + +G + L+ L S L
Sbjct: 472 FFAAVDLVNPGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARN-EELRELTSQFML 530
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLS 573
RRT D L PKT + + + + K+Y + A V Q G+L N + L
Sbjct: 531 RRTADILADYLPPKTEYVLFCKPTNTQAKIYQNV--LASPVFQ-----GAL-GNSESALQ 582
Query: 574 ILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNN--PDLLK 612
++ L+++C + +L + PS TI + ++ P+LL+
Sbjct: 583 LITILKKLCNSPSLLSLKDANEKPSETIAAILSSLPPNLLR 623
Score = 68 (29.0 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I ADDMGLGKTL ++L+
Sbjct: 320 GAILADDMGLGKTLQTITLL 339
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 245 (91.3 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 60/158 (37%), Positives = 95/158 (60%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN----AKKRAQVIEEFGNPGPGGPTVL 771
+++VFSQ R++L ++E L+ FK LR+DG++ +KR Q+ ++ N +V
Sbjct: 480 QTLVFSQSRQILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQ--NKEY---SVF 534
Query: 772 LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831
L + + G G+ LTAASRV + +P WNPA + QA+DRV+RIGQKE+V + RLI ++EE
Sbjct: 535 LLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEE 594
Query: 832 RILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+I Q K L R+ K R + +L+ L ++
Sbjct: 595 KIYRRQVFKDSLIRQTTGDKKNPFRYFTKQELKELFTV 632
Score = 163 (62.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 60/212 (28%), Positives = 101/212 (47%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGM-LKTY--MY 382
DD GK+V ++ S + L++ P ++ +TW+ + + T PGM +KT+
Sbjct: 122 DDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFAKWT-PGMRVKTFHGSS 180
Query: 383 YGDRTQDVEELKMYD-LVLTTYSTLAIEESWLES-PVKKIEWWRVILDEAHVIKNANAQQ 440
+R +++ ++ + +V+TTY L L S + W VILDEAH IK+A+ +
Sbjct: 181 KNERIRNLTRIQQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKS 240
Query: 441 SRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFL-QFEPFSVKSYWQSLIQRPLAQGNRK 499
+ + A R ++TGTPIQN +L+SL F Q ++ + P+ + K
Sbjct: 241 AVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPIIRAREK 300
Query: 500 ---------GLSRLQVLMSTIS---LRRTKDK 519
G + LM I LRRTK++
Sbjct: 301 DATPGEKALGFKMSENLMEIIKPYFLRRTKEE 332
Score = 79 (32.9 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 210 GWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
G L+ RE E+L F +K G + L + + + R +GGI ADDMGLGKT+ +++ +
Sbjct: 85 GLLLYRELYEKL--FEHQKEG--IAFLYSLYKNGR----KGGILADDMGLGKTVQIIAFL 136
Query: 270 A 270
+
Sbjct: 137 S 137
Score = 45 (20.9 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 200 ELFVHQKEGLGWL 212
+LF HQKEG+ +L
Sbjct: 95 KLFEHQKEGIAFL 107
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 245 (91.3 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 65/221 (29%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S S + G ++ + S
Sbjct: 1025 KTLMNTIMQLRKICNHPYMFQHIEES--FSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T K ++F Q ++ ++E+ GFK LRLDG+ A+ R ++ F PG
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-FNEPG--SE 1139
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+L S +A G G+NL +A V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1140 YFILLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1199
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1200 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1240
Score = 182 (69.1 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 799 LIIVPLSTLSNWAYEFDKWA-PSVVKV-SYKGSPAARRAFVPQLRSGKFNVLLTTYEYI- 855
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 856 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 912
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G + L+ RL ++ LRR
Sbjct: 913 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL 972
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S +R LY ++ AKGV+ D + + T++
Sbjct: 973 K-KEVEAQLPEKVE-YVIKCDMSALQRVLYRHMQ--AKGVLLTDGSEKDKKGKGGTKTLM 1028
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1029 NTIMQLRKICNH 1040
Score = 64 (27.6 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 767 GILADEMGLGKTIQTIALI 785
Score = 37 (18.1 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 792 LLEPWWNPAVEEQAMDRVHR-IGQKE 816
L E W A+EE ++ + + QK+
Sbjct: 1340 LTEKQWLKAIEEGTLEEIEEEVRQKK 1365
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 227 (85.0 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 73/248 (29%), Positives = 129/248 (52%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKM--------YDLVLTTYS 404
LIV P SV W + ++ PG K YYG +Q +LK + + +T+Y
Sbjct: 967 LIVVPSSVMLNWEMEFKKWC-PGF-KILTYYG--SQKERKLKRVGWTKPNAFHVCITSYK 1022
Query: 405 TLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
L +++ + ++ +W +ILDEA IKN +Q+ + + N + +RR ++TGTP+QN
Sbjct: 1023 -LVVQD---QQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDL 1078
Query: 465 FDLFSLMAFLQFEPFSVKSYWQSLIQRPLA---QGNRKG----LSRLQVLMSTISLRRTK 517
+L+SLM FL FS ++ P+ +GN + ++RL ++ LRR K
Sbjct: 1079 MELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYNETLITRLHKVIRPFLLRRLK 1138
Query: 518 DKGLIGLQPKTIEKYYV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K + PK E LS +R LY++ +AK ++ + G+L+ +V+++L+
Sbjct: 1139 -KEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAK--TRETLQTGNLL----SVINVLM 1191
Query: 577 RLRQICTN 584
+LR++C +
Sbjct: 1192 QLRKVCNH 1199
Score = 221 (82.9 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 50/127 (39%), Positives = 72/127 (56%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F+Q KML +LE L G LRLDGS ++R ++E F G + S ++
Sbjct: 1678 LIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFN--GDKRIFCFILSTRS 1735
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NLT A V + WNP ++ QA DR HRIGQ DV I RL+ +IE IL+
Sbjct: 1736 GGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKA 1795
Query: 838 DRKKKLA 844
++K+ L+
Sbjct: 1796 NQKRMLS 1802
Score = 71 (30.1 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCA 275
GI AD+MGLGKT+ ++L+A CA
Sbjct: 935 GILADEMGLGKTIQTIALLAHLACA 959
Score = 41 (19.5 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 74 TDQVGHIERSVAAVLAPLIDSGMILVEGIVPNTRSKGN-RFKIPCQVHIFT 123
T Q +E S+ + + G L +G + N+ K N + ++P ++ FT
Sbjct: 270 TQQTDSVESSLVSGIGTGATKGAPL-DGNISNSTVKTNTQSQVPSKIGSFT 319
Score = 37 (18.1 bits), Expect = 2.1e-31, Sum P(5) = 2.1e-31
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 196 VIKSELFVHQKEGLGWLV 213
++K L +Q GL WLV
Sbjct: 909 LLKHSLREYQHIGLDWLV 926
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 213 (80.0 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 49/139 (35%), Positives = 76/139 (54%)
Query: 716 KSVVFSQFRKMLILLEE-PLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
K ++FSQF+ L +L++ + R+DG+++ R I+ F + L S
Sbjct: 644 KILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKAFNTDKDY--KIFLLS 701
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
+A G G+NL AA V L + WNP + QA DR HRIGQ + V + RL + ++E+ +L
Sbjct: 702 TRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQTLL 761
Query: 835 ELQDRKKKLAREAFRRKGK 853
E D K++L R + KGK
Sbjct: 762 EKADSKRRLERLVIQ-KGK 779
Score = 194 (73.4 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 70/265 (26%), Positives = 127/265 (47%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
D+ GK+V ++ + F ++ LI P S S W+ + T PG +KT +Y+G
Sbjct: 227 DEMGLGKTVQAISLIAFFKEHNVSGPFLISAPLSTVSNWVDEFARWT-PG-IKTVLYHGT 284
Query: 386 RTQ---------DVEELKMYD--LVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIK 434
R + ++ + K D +V T+Y + +L + +W +I+DE H +K
Sbjct: 285 RDERAQLRKKFMNLRDQKSPDFPVVCTSYEICMNDRKFLA----QYQWRYIIVDEGHRLK 340
Query: 435 NANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS-VKSY--W---QSL 488
N N + + + + N+ R ++TGTP+QN +L+SL+ FL E F+ + S+ W S+
Sbjct: 341 NMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLLPEIFNDLNSFQNWFDFSSV 400
Query: 489 I----QRPLAQGNRKGL-SRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKL 543
+ Q + + ++ L S + ++ LRR K L K Y L+LE++ L
Sbjct: 401 LDNNGQTDMIERRKRTLVSTMHSILKPFLLRRVKTDVESALPKKREYILYAPLTLEQKDL 460
Query: 544 YDE-LEGKAKGVVQDYINAGSLMRN 567
Y E L G + +++ + +N
Sbjct: 461 YREILNGTGRQYLEEKATERLMAKN 485
Score = 72 (30.4 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 251 GIFADDMGLGKTLTLLSLIALDK 273
GI AD+MGLGKT+ +SLIA K
Sbjct: 223 GILADEMGLGKTVQAISLIAFFK 245
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 303 (111.7 bits), Expect = 4.3e-31, Sum P(4) = 4.3e-31
Identities = 74/197 (37%), Positives = 109/197 (55%)
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIE------ES----------WLESPVKKIEWWRVILD 428
+R Q + L YD+V+TTYS LA E E + +P+ ++ W R+ILD
Sbjct: 658 NRIQHAKVLSTYDIVITTYSLLAKEIPTAKHEGEVPGAKLSVEGISAPLLQVVWARIILD 717
Query: 429 EAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSL 488
EAH +KN Q S V L A+ RW VTGTPIQN D++SLM FL+ PF S W+S
Sbjct: 718 EAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEFSLWKSQ 777
Query: 489 IQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERK 542
+ G+ KG RL +L ++ LRRTKD K L+ L ++ + + ++LS +ER
Sbjct: 778 VDN----GSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVPLPARSCQLHRLKLSEDERA 833
Query: 543 LYDELEGKAKGVVQDYI 559
+YD +++ +Q Y+
Sbjct: 834 VYDVFLARSRSALQSYL 850
Score = 133 (51.9 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 341 NKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLV 399
N SS F TLIVCP S+ W ++E+ L+ Y+Y+G +R Q + L YD+V
Sbjct: 614 NDSSVFTSTG-TLIVCPASLIHHWKNEIEKRVNSNKLRIYLYHGPNRIQHAKVLSTYDIV 672
Query: 400 LTTYSTLAIE 409
+TTYS LA E
Sbjct: 673 ITTYSLLAKE 682
Score = 88 (36.0 bits), Expect = 4.3e-31, Sum P(4) = 4.3e-31
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALDK 273
+GGI ADDMGLGKTLT+++LI K
Sbjct: 570 QGGILADDMGLGKTLTMIALILTKK 594
Score = 67 (28.6 bits), Expect = 4.3e-31, Sum P(4) = 4.3e-31
Identities = 31/76 (40%), Positives = 40/76 (52%)
Query: 553 GVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDV--SNNP-- 608
GV Q A S + VLS LLRLRQ C +L+L S VR+ PS V S +P
Sbjct: 878 GVPQCSTAADSRRPSTVHVLSQLLRLRQCCCHLSLLKS-VRA--PSGVTATVCCSQDPGS 934
Query: 609 DLLKKLV--EVLQDGE 622
+ K+LV +L +GE
Sbjct: 935 SVRKRLVCSALLWEGE 950
Score = 58 (25.5 bits), Expect = 4.3e-31, Sum P(4) = 4.3e-31
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 197 IKSELFVHQKEGLGWLVRRENSE 219
+K L +HQK+ L WL+ RE+ +
Sbjct: 546 LKVPLLLHQKQALAWLLWRESQK 568
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 244 (91.0 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 54/154 (35%), Positives = 86/154 (55%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++F Q +++ ++E+ L+ G K +RLDG A R +++ F P LL S
Sbjct: 1120 KVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLL-ST 1178
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
+A G G+NL A V + + WNP + QA DR HRIGQK +V+I+RLI NS+EE ILE
Sbjct: 1179 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILE 1238
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+K ++ + + D + + + +L +L
Sbjct: 1239 RAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRAL 1272
Score = 179 (68.1 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 80/294 (27%), Positives = 146/294 (49%)
Query: 329 DDNVKGKSVGMLNKSSSFMG-KKIT---LIVCPPSVFSTWITQLEEHTVPGMLK-TYMYY 383
D+ GK++ ++ + + KKI L++ P S + W + E+ P + K TY
Sbjct: 806 DEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWA-PSIKKITYKGT 864
Query: 384 GDRTQDVE-ELKM--YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQ 440
++ + ++ +++ + LVLTT+ + I++ L + +I+W +I+DE H +KNAN++
Sbjct: 865 PNQRKVMQHDIRTGNFQLVLTTFEYV-IKDKGL---LGRIKWVHMIIDEGHRMKNANSKL 920
Query: 441 SRTVT-NLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPF-SVKSYWQSLIQRPLAQ--G 496
S T+T N ++ R ++TGTP+QN +L++L+ F+ + F SVKS+ P A G
Sbjct: 921 SETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSF-DEWFNTPFANTGG 979
Query: 497 NRK----------GLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYY-VELSLEERKLYD 545
K + RL ++ LRR K K + P +EK + S + KLY
Sbjct: 980 QDKIELTEEETLLVIRRLHKVLRPFLLRRLK-KDVEKDLPNKVEKVVKCKSSALQSKLYQ 1038
Query: 546 ELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSN 599
++ D N GS+ + +++L++IC N +V ++I N
Sbjct: 1039 QMLRYNMLYAGDPAN-GSVPVTIKNANNQIMQLKKIC-NHPFVYEEVENLINPN 1090
Score = 65 (27.9 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ +SL+
Sbjct: 802 GILADEMGLGKTIQTISLL 820
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 244 (91.0 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 54/154 (35%), Positives = 86/154 (55%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++F Q +++ ++E+ L+ G K +RLDG A R +++ F P LL S
Sbjct: 1120 KVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLL-ST 1178
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
+A G G+NL A V + + WNP + QA DR HRIGQK +V+I+RLI NS+EE ILE
Sbjct: 1179 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILE 1238
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+K ++ + + D + + + +L +L
Sbjct: 1239 RAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRAL 1272
Score = 179 (68.1 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 80/294 (27%), Positives = 146/294 (49%)
Query: 329 DDNVKGKSVGMLNKSSSFMG-KKIT---LIVCPPSVFSTWITQLEEHTVPGMLK-TYMYY 383
D+ GK++ ++ + + KKI L++ P S + W + E+ P + K TY
Sbjct: 806 DEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWA-PSIKKITYKGT 864
Query: 384 GDRTQDVE-ELKM--YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQ 440
++ + ++ +++ + LVLTT+ + I++ L + +I+W +I+DE H +KNAN++
Sbjct: 865 PNQRKVMQHDIRTGNFQLVLTTFEYV-IKDKGL---LGRIKWVHMIIDEGHRMKNANSKL 920
Query: 441 SRTVT-NLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPF-SVKSYWQSLIQRPLAQ--G 496
S T+T N ++ R ++TGTP+QN +L++L+ F+ + F SVKS+ P A G
Sbjct: 921 SETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSF-DEWFNTPFANTGG 979
Query: 497 NRK----------GLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYY-VELSLEERKLYD 545
K + RL ++ LRR K K + P +EK + S + KLY
Sbjct: 980 QDKIELTEEETLLVIRRLHKVLRPFLLRRLK-KDVEKDLPNKVEKVVKCKSSALQSKLYQ 1038
Query: 546 ELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSN 599
++ D N GS+ + +++L++IC N +V ++I N
Sbjct: 1039 QMLRYNMLYAGDPAN-GSVPVTIKNANNQIMQLKKIC-NHPFVYEEVENLINPN 1090
Score = 65 (27.9 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ +SL+
Sbjct: 802 GILADEMGLGKTIQTISLL 820
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 239 (89.2 bits), Expect = 4.7e-31, Sum P(3) = 4.7e-31
Identities = 69/211 (32%), Positives = 105/211 (49%)
Query: 663 LCRHPLLQSDLFSSPPESSDMDIAGKTLKN--FTSSKVSAXXXXXXXXRD--KKPTTKSV 718
+C HP DLFS P++ I G+ L+ F K S K + +
Sbjct: 794 ICNHP----DLFSGGPKNFK-GIPGEELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVL 848
Query: 719 VFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKAS 778
+FSQ R+ML +LE L+A + L++DG+ R +I + V L + +
Sbjct: 849 LFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNEDA--SIFVFLLTTRVG 906
Query: 779 GAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQD 838
G GVNLT A+RV + +P WNP+ + QA +R RIGQK+ V + RL+ +IEE+I Q
Sbjct: 907 GLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQI 966
Query: 839 RKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
K+ L + K +R ++DL L +L
Sbjct: 967 FKQFLTNRVLKDP-KQRRFFKSNDLYELFTL 996
Score = 180 (68.4 bits), Expect = 4.7e-31, Sum P(3) = 4.7e-31
Identities = 66/274 (24%), Positives = 120/274 (43%)
Query: 346 FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL-----KMYDLVL 400
F G T+IVCP +V W+ + P + G T E+L + +++
Sbjct: 552 FEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSFTHKKEKLVRDIAHCHGILI 611
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+YS + + ++ + + +W VILDE H I+N NA + R +++G+P+
Sbjct: 612 TSYSYIRL----MQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPM 667
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMS---TISLRRTK 517
QN +L+SL F+ + P+ G S +QV + LR T
Sbjct: 668 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 727
Query: 518 DKGLIGLQPKTIEKYYVELSL---EERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
+ L+ ++ + LSL E+ L+ L + V Q++I++ + R + + I
Sbjct: 728 NPYLLRRMKSDVK---MSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQI 784
Query: 575 ---LLRLRQICTNLALCPSDVRSI--IPSNTIED 603
L+ LR+IC + L ++ IP +E+
Sbjct: 785 FSGLVALRKICNHPDLFSGGPKNFKGIPGEELEE 818
Score = 67 (28.6 bits), Expect = 4.7e-31, Sum P(3) = 4.7e-31
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLIA 270
GGI D+MGLGKT+ +++ +A
Sbjct: 516 GGILGDEMGLGKTIQIIAFLA 536
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 219 (82.2 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 68/230 (29%), Positives = 114/230 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDVEELKMYDLVLTTYSTL 406
LI+CP SV S W ++E PG+ Y GD+ QD+++ + ++LTTY
Sbjct: 101 LILCPLSVLSNWKEEMER-CAPGLC-CVTYAGDKEERAHLQQDLKQESGFHVLLTTYEIC 158
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ S+L+S W +++DEAH +KN N+ ++++ + R ++TGTPIQN +
Sbjct: 159 LKDASFLKS----FPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQE 214
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQR-PLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQ 525
L+SL++F++ + FS K + +QR + + S L L+ LRR K + L
Sbjct: 215 LYSLLSFVEPDLFS-KEEVEDFVQRYEDIEKESESASELYKLLQPFLLRRVKAEVAAELP 273
Query: 526 PKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL 575
KT Y +S ++K Y + K + + N + VLS L
Sbjct: 274 KKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQL 323
Score = 212 (79.7 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 55/152 (36%), Positives = 84/152 (55%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASLK 776
++FSQ +ML +L++ + G+ R+DGS+ ++R I+ FG P + L S +
Sbjct: 372 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQ----PIFIFLLSTR 427
Query: 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
A G G+NLTAA V ++ +NP + QA R HRIGQ + VK++RLI R+++EE I
Sbjct: 428 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRK 487
Query: 837 QDRKKKLAR---EAFRRKGKDQREVSTDDLRI 865
K KL E R QR + DL++
Sbjct: 488 AASKLKLTNTIIEGGRFTLGAQRPAAEADLQL 519
Score = 52 (23.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 815 KEDVKIVRLIVRNSIEERIL---ELQDRKKKLAREAFRRK 851
K V I L+ ++ +RIL EL+DR+KK A +RK
Sbjct: 621 KGSVLIPGLVEGSTQRKRILSPEELEDRRKKRQEAAAKRK 660
Score = 47 (21.6 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I D+MGLGKT +++
Sbjct: 68 GCILGDEMGLGKTCQTIAV 86
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 244 (91.0 bits), Expect = 6.3e-31, Sum P(5) = 6.3e-31
Identities = 56/133 (42%), Positives = 74/133 (55%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++FSQ ML +L+E LQ F RLDGSM A R Q ++ + PG LL S +A
Sbjct: 731 LIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLL-STRA 789
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NL A V + + WNP + QAM R HRIGQ + V I RL+ + S+EE I+E
Sbjct: 790 GGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERA 849
Query: 838 DRKKKLAREAFRR 850
RK L +R
Sbjct: 850 KRKLVLDHLVIQR 862
Score = 190 (71.9 bits), Expect = 6.3e-31, Sum P(5) = 6.3e-31
Identities = 52/193 (26%), Positives = 99/193 (51%)
Query: 376 MLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKN 435
M++ Y ++ T+ ++K+ + +LTTY L ++++L S I+W +++DEAH +KN
Sbjct: 494 MIRQYEWFVGGTK---KMKI-NAILTTYEILLKDKAFLSS----IDWAALLVDEAHRLKN 545
Query: 436 ANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQ 495
+ +++T + ++TGTP+QN +L++L+ F+ E F W+ + +
Sbjct: 546 DESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPEKFDC---WEEF-ETAHNE 601
Query: 496 GNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYD--------EL 547
N KG+S L + LRR K L PKT + V+++ +++ Y EL
Sbjct: 602 SNHKGISALHKKLEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYREL 661
Query: 548 EGKAKGVVQDYIN 560
KG + ++N
Sbjct: 662 SKGVKGSINGFVN 674
Score = 62 (26.9 bits), Expect = 6.3e-31, Sum P(5) = 6.3e-31
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 252 IFADDMGLGKTLTLLSLIA 270
I AD+MGLGKT+ +SL+A
Sbjct: 427 ILADEMGLGKTIQSISLLA 445
Score = 51 (23.0 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVL 236
+++ ++ HQK+ W++ + N EL + GFVN++
Sbjct: 637 ILRVDMTAHQKQFYKWILTK-NYRELSKGVKGSINGFVNLV 676
Score = 39 (18.8 bits), Expect = 6.3e-31, Sum P(5) = 6.3e-31
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 844 AREAFRRKGKDQREVSTDDLRILM 867
A E F+ K +++E D RILM
Sbjct: 896 AVELFKEKEGEEQEPEVDIDRILM 919
Score = 37 (18.1 bits), Expect = 6.3e-31, Sum P(5) = 6.3e-31
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 204 HQKEGLGWLV 213
+Q EGL W+V
Sbjct: 408 YQLEGLNWMV 417
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 272 (100.8 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 73/214 (34%), Positives = 110/214 (51%)
Query: 663 LCRHPLL-------QSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTT 715
LC HP L + D F + + K L+ S K+ R + +
Sbjct: 456 LCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRS-SD 514
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ +A + +RLDG+M+ KKRA+V+E F +P +L+S
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS- 573
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I +
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQ 633
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q KK L+ + +R S +L+ L L
Sbjct: 634 RQSHKKALSSCVVDEEQDVERHFSLGELKELFIL 667
Score = 133 (51.9 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 49/176 (27%), Positives = 87/176 (49%)
Query: 425 VILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSY 484
VI DE H +KN+ Q + + +LN RR +++GTPIQN + FSL+ F+
Sbjct: 293 VICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHE 352
Query: 485 WQSLIQRPLAQG--------NRK-GLSRLQVLMSTIS---LRRTKDKGLIGLQPKTIEKY 532
++ + P+ +G +R+ G RL+ L S ++ +RRT D L P IE+
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDI-LSKYLPVKIEQV 411
Query: 533 YV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
L+ + +LY +AK ++ + + + S++ S L+++C + AL
Sbjct: 412 VCCRLTPLQTELYKRFLRQAKPA-EELLEGKMSVSSLSSITS----LKKLCNHPAL 462
Score = 64 (27.6 bits), Expect = 7.5e-31, Sum P(3) = 7.5e-31
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 241 TDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
T +R G I AD+MGLGKTL ++L+
Sbjct: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLM 197
Score = 37 (18.1 bits), Expect = 4.7e-28, Sum P(3) = 4.7e-28
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELP 222
++ L HQ+EG+ +L S +P
Sbjct: 148 ILSKVLRPHQREGVKFLWECVTSRRIP 174
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 223 (83.6 bits), Expect = 7.9e-31, Sum P(4) = 7.9e-31
Identities = 50/126 (39%), Positives = 72/126 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F+Q +ML +LE+ L G LRLDGS ++R ++E F + S ++
Sbjct: 2051 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFN--ADKRIFCFILSTRS 2108
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G GVNLT A V + WNP ++ QA DR HRIGQ DV I RLI ++EE IL+
Sbjct: 2109 GGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKA 2168
Query: 838 DRKKKL 843
++K+ L
Sbjct: 2169 NQKRML 2174
Score = 215 (80.7 bits), Expect = 7.9e-31, Sum P(4) = 7.9e-31
Identities = 72/246 (29%), Positives = 122/246 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD------RTQDVEELKMYDLVLTTYSTL 406
LI+ P SV W +L+ P K YYG + Q + + + +T+Y L
Sbjct: 681 LIIVPTSVMLNWEMELKRWC-PSF-KILTYYGAQKERKLKRQGWTKPNAFHVCITSYK-L 737
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ ++ W +ILDEA IKN +Q+ +++ N N++RR ++TGTP+QN +
Sbjct: 738 VLQD---HQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLME 794
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLA---QGNRK---GL-SRLQVLMSTISLRRTKDK 519
L+SLM FL F ++ PL +G+++ GL RL ++ LRR K
Sbjct: 795 LWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK-V 853
Query: 520 GLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ PK E LS +R LYD+ A+ ++ + G M +V++IL++L
Sbjct: 854 DVEKQMPKKYEHVIRCRLSKRQRCLYDDF--MAQTTTKETLATGHFM----SVINILMQL 907
Query: 579 RQICTN 584
R++C +
Sbjct: 908 RKVCNH 913
Score = 70 (29.7 bits), Expect = 7.9e-31, Sum P(4) = 7.9e-31
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI AD+MGLGKT+ +SL+A C
Sbjct: 649 GILADEMGLGKTIQTISLLAHLAC 672
Score = 45 (20.9 bits), Expect = 1.4e-13, Sum P(4) = 1.4e-13
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 487 SLIQRPLAQ-GNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVEL 536
SL QRP+ G K L+ Q+ + ++L + + L QP+ +++ V L
Sbjct: 1202 SLAQRPVTSAGGSKPLT-FQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHL 1251
Score = 37 (18.1 bits), Expect = 7.9e-31, Sum P(4) = 7.9e-31
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 196 VIKSELFVHQKEGLGWLV 213
+++ +L +Q GL WLV
Sbjct: 623 LLRGQLREYQHIGLDWLV 640
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 223 (83.6 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 50/126 (39%), Positives = 72/126 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F+Q +ML +LE+ L G LRLDGS ++R ++E F + S ++
Sbjct: 2063 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFN--ADKRIFCFILSTRS 2120
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G GVNLT A V + WNP ++ QA DR HRIGQ DV I RLI ++EE IL+
Sbjct: 2121 GGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKA 2180
Query: 838 DRKKKL 843
++K+ L
Sbjct: 2181 NQKRML 2186
Score = 215 (80.7 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 72/246 (29%), Positives = 122/246 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD------RTQDVEELKMYDLVLTTYSTL 406
LI+ P SV W +L+ P K YYG + Q + + + +T+Y L
Sbjct: 671 LIIVPTSVMLNWEMELKRWC-PSF-KILTYYGAQKERKLKRQGWTKPNAFHVCITSYK-L 727
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ ++ W +ILDEA IKN +Q+ +++ N N++RR ++TGTP+QN +
Sbjct: 728 VLQD---HQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLME 784
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLA---QGNRK---GL-SRLQVLMSTISLRRTKDK 519
L+SLM FL F ++ PL +G+++ GL RL ++ LRR K
Sbjct: 785 LWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK-V 843
Query: 520 GLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ PK E LS +R LYD+ A+ ++ + G M +V++IL++L
Sbjct: 844 DVEKQMPKKYEHVIRCRLSKRQRCLYDDF--MAQTTTKETLATGHFM----SVINILMQL 897
Query: 579 RQICTN 584
R++C +
Sbjct: 898 RKVCNH 903
Score = 70 (29.7 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI AD+MGLGKT+ +SL+A C
Sbjct: 639 GILADEMGLGKTIQTISLLAHLAC 662
Score = 49 (22.3 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 487 SLIQRPLAQ-GNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVEL 536
SL QRP+A G K L+ Q+ + ++L + + L QP+ +++ V L
Sbjct: 1192 SLAQRPVANAGGSKPLT-FQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHL 1241
Score = 37 (18.1 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 196 VIKSELFVHQKEGLGWLV 213
+++ +L +Q GL WLV
Sbjct: 613 LLRGQLREYQHIGLDWLV 630
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 223 (83.6 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 50/126 (39%), Positives = 72/126 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F+Q +ML +LE+ L G LRLDGS ++R ++E F + S ++
Sbjct: 2063 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFN--ADKRIFCFILSTRS 2120
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G GVNLT A V + WNP ++ QA DR HRIGQ DV I RLI ++EE IL+
Sbjct: 2121 GGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKA 2180
Query: 838 DRKKKL 843
++K+ L
Sbjct: 2181 NQKRML 2186
Score = 215 (80.7 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 72/246 (29%), Positives = 122/246 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD------RTQDVEELKMYDLVLTTYSTL 406
LI+ P SV W +L+ P K YYG + Q + + + +T+Y L
Sbjct: 678 LIIVPTSVMLNWEMELKRWC-PSF-KILTYYGAQKERKLKRQGWTKPNAFHVCITSYK-L 734
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ ++ W +ILDEA IKN +Q+ +++ N N++RR ++TGTP+QN +
Sbjct: 735 VLQD---HQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLME 791
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLA---QGNRK---GL-SRLQVLMSTISLRRTKDK 519
L+SLM FL F ++ PL +G+++ GL RL ++ LRR K
Sbjct: 792 LWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK-V 850
Query: 520 GLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ PK E LS +R LYD+ A+ ++ + G M +V++IL++L
Sbjct: 851 DVEKQMPKKYEHVIRCRLSKRQRCLYDDF--MAQTTTKETLATGHFM----SVINILMQL 904
Query: 579 RQICTN 584
R++C +
Sbjct: 905 RKVCNH 910
Score = 70 (29.7 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI AD+MGLGKT+ +SL+A C
Sbjct: 646 GILADEMGLGKTIQTISLLAHLAC 669
Score = 49 (22.3 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 487 SLIQRPLAQ-GNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVEL 536
SL QRP+A G K L+ Q+ + ++L + + L QP+ +++ V L
Sbjct: 1200 SLAQRPVASAGGSKPLT-FQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHL 1249
Score = 37 (18.1 bits), Expect = 8.5e-31, Sum P(4) = 8.5e-31
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 196 VIKSELFVHQKEGLGWLV 213
+++ +L +Q GL WLV
Sbjct: 620 LLRGQLREYQHIGLDWLV 637
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 223 (83.6 bits), Expect = 8.6e-31, Sum P(4) = 8.6e-31
Identities = 50/126 (39%), Positives = 72/126 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F+Q +ML +LE+ L G LRLDGS ++R ++E F + S ++
Sbjct: 2074 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFN--ADKRIFCFILSTRS 2131
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G GVNLT A V + WNP ++ QA DR HRIGQ DV I RLI ++EE IL+
Sbjct: 2132 GGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKA 2191
Query: 838 DRKKKL 843
++K+ L
Sbjct: 2192 NQKRML 2197
Score = 215 (80.7 bits), Expect = 8.6e-31, Sum P(4) = 8.6e-31
Identities = 72/246 (29%), Positives = 122/246 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD------RTQDVEELKMYDLVLTTYSTL 406
LI+ P SV W +L+ P K YYG + Q + + + +T+Y L
Sbjct: 679 LIIVPTSVMLNWEMELKRWC-PSF-KILTYYGAQKERKLKRQGWTKPNAFHVCITSYK-L 735
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ ++ W +ILDEA IKN +Q+ +++ N N++RR ++TGTP+QN +
Sbjct: 736 VLQD---HQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLME 792
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLA---QGNRK---GL-SRLQVLMSTISLRRTKDK 519
L+SLM FL F ++ PL +G+++ GL RL ++ LRR K
Sbjct: 793 LWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK-V 851
Query: 520 GLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ PK E LS +R LYD+ A+ ++ + G M +V++IL++L
Sbjct: 852 DVEKQMPKKYEHVIRCRLSKRQRCLYDDF--MAQTTTKETLATGHFM----SVINILMQL 905
Query: 579 RQICTN 584
R++C +
Sbjct: 906 RKVCNH 911
Score = 70 (29.7 bits), Expect = 8.6e-31, Sum P(4) = 8.6e-31
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKC 274
GI AD+MGLGKT+ +SL+A C
Sbjct: 647 GILADEMGLGKTIQTISLLAHLAC 670
Score = 49 (22.3 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 487 SLIQRPLAQ-GNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVEL 536
SL QRP+A G K L+ Q+ + ++L + + L QP+ +++ V L
Sbjct: 1200 SLTQRPVASTGGSKPLT-FQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHL 1249
Score = 37 (18.1 bits), Expect = 8.6e-31, Sum P(4) = 8.6e-31
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 196 VIKSELFVHQKEGLGWLV 213
+++ +L +Q GL WLV
Sbjct: 621 LLRGQLREYQHIGLDWLV 638
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 226 (84.6 bits), Expect = 9.4e-31, Sum P(3) = 9.4e-31
Identities = 47/128 (36%), Positives = 76/128 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
++++F+Q K+L +LE+ L G+ +RLDG+ + R + E F TV + S
Sbjct: 1264 RALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSR--ITVFILSS 1321
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
++ G G+NLT A V + WNPA+++Q DR HRIGQ DV I R + ++IE IL+
Sbjct: 1322 RSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILK 1381
Query: 836 LQDRKKKL 843
++K++L
Sbjct: 1382 KANQKRQL 1389
Score = 183 (69.5 bits), Expect = 9.4e-31, Sum P(3) = 9.4e-31
Identities = 71/293 (24%), Positives = 136/293 (46%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK------MYDLVLTTYSTL 406
LIV P SV W + + PG K YYG Q E+ K + + + +Y L
Sbjct: 749 LIVVPTSVLLNWEMEFKRFA-PGF-KVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQ-L 805
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+++ + K+ W ++LDEAH IKN + + + + N N +RR ++TGTP+QN +
Sbjct: 806 VVQD---QHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAE 862
Query: 467 LFSLMAFL---------QFEPFSVKSYWQSLIQRPLAQ----GNRKGLSRLQVLMSTISL 513
L+SL+ FL + F+ +Q RP+ + G G + + + L
Sbjct: 863 LWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDK-ETKKTVAKL 921
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMR-----NY 568
+ L+ +EK + E +Y +L + + + D+++ N+
Sbjct: 922 HQVLRPYLLRRLKADVEKQMP--AKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNF 979
Query: 569 STVLSILLRLRQICTNLALCPSDVRSIIPSNTIED--VSNNPDLLKKLVEVLQ 619
++++ L++LR++C + L +VR I+ S +E S+ D+ + L+++ +
Sbjct: 980 MSIVNCLMQLRKVCNHPNLF--EVRPILTSFVLEHCVASDYKDVERTLLKLFK 1030
Score = 75 (31.5 bits), Expect = 9.4e-31, Sum P(3) = 9.4e-31
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 225 WEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKC 274
++++G ++ L N HT+ GI AD+MGLGKT+ +SL+A C
Sbjct: 699 YQKQGLNWLASLYNNHTN--------GILADEMGLGKTIQTISLLAYLAC 740
Score = 49 (22.3 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGG 231
+++ L +QK+GL WL N+ +E G G
Sbjct: 691 LLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLG 726
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 279 (103.3 bits), Expect = 9.4e-31, Sum P(3) = 9.4e-31
Identities = 74/213 (34%), Positives = 113/213 (53%)
Query: 663 LCRHP-LLQ--SDL----FSSPPESSDMDIAGKT--LKNFTSSKVSAXXXXXXXXRDKKP 713
LC HP LL +DL + P + ++ G+ ++ + S K+ R +
Sbjct: 544 LCNHPDLLNLSTDLPGCEHAFPDDYVPVEARGRDRDVRPWYSGKMMVLDRMLARIR-QDT 602
Query: 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773
K V+ S + + L L E+ ++ + LRLDG+MN KKR +++++F +P G V L
Sbjct: 603 NDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKKRQKLVDKFNDPD-GEEFVFLL 661
Query: 774 SLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERI 833
S KA G G+NL A+R+ L +P WNPA ++QA+ RV R GQK+D + R I SIEE+I
Sbjct: 662 SSKAGGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGSIEEKI 721
Query: 834 LELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
+ Q K+ L+ +R S D LR L
Sbjct: 722 FQRQSHKQSLSSCVVDSAEDVERHFSLDSLREL 754
Score = 131 (51.2 bits), Expect = 9.4e-31, Sum P(3) = 9.4e-31
Identities = 46/191 (24%), Positives = 88/191 (46%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG--DRTQDVEELKMYDL----------VL 400
+I CP S+ W +L + + + G +T+ +LK + + ++
Sbjct: 303 IIACPSSLVGNWANELGKWLGKDTITPFAVDGKASKTELTSQLKQWAISSGRSIVRPVLI 362
Query: 401 TTYSTLAIEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTP 459
+Y TL + L +SP+ + + DE H +KN + + +LN +RR +++GTP
Sbjct: 363 VSYETLRMYVDTLKDSPIGLL-----LCDEGHRLKNKESLTWTALNSLNVQRRVILSGTP 417
Query: 460 IQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN---------RKGLSRLQVLMST 510
IQN + F+L+ F + ++ ++ + P+ +G +KG RL L S
Sbjct: 418 IQNDLSEYFALLNFANPDLLGSQNEFRKRFEIPILKGRDAAGTEEDRKKGDERLAELSSI 477
Query: 511 IS---LRRTKD 518
++ +RRT D
Sbjct: 478 VNKFIIRRTND 488
Score = 60 (26.2 bits), Expect = 9.4e-31, Sum P(3) = 9.4e-31
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD MGLGKTL +SL+
Sbjct: 265 GCIMADGMGLGKTLQCISLM 284
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 244 (91.0 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 64/205 (31%), Positives = 97/205 (47%)
Query: 643 HIFC--RSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSA 700
+++C RS ++H + C L+ S L P I + +
Sbjct: 1100 YLYCDSRSAAWSQIRHNQ-CENSQGRELVSSGLALCKPHGGWSSIVVPDKETLITDAGKL 1158
Query: 701 XXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
R K + +++SQ KM+ LLEE + + +RLDGS R ++ +F
Sbjct: 1159 FVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADF 1218
Query: 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
V L S +A G G+NLTAA V + WNP V++QAMDR HR+GQ + V +
Sbjct: 1219 QTRAD--IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTV 1276
Query: 821 VRLIVRNSIEERILELQDRKKKLAR 845
RLI + +IEERIL+ K ++ R
Sbjct: 1277 YRLICKGTIEERILQRAREKSEIQR 1301
Score = 184 (69.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 65/268 (24%), Positives = 128/268 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--------DVEELKMYD----LVL 400
L++ P S W ++ VP K Y+G + D + L D +V+
Sbjct: 588 LVISPASTLHNWQQEMSRF-VPDF-KVVPYWGSPAERKILRQFWDQKHLHTRDASFHVVI 645
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+Y + + + +I+W ++LDEA IK+A +Q+ + + + + R +++GTPI
Sbjct: 646 TSYQLVVSDYKYFN----RIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPI 701
Query: 461 QNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQG----NRKGLSRLQVLMSTISL 513
QN +L++L+ F+ F+ + W S A+ + K +SRL +++ L
Sbjct: 702 QNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFML 761
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQD--YINAGSLMRNYST- 570
RR K L K Y L++ ++ LY L+ K + ++D ++ +GS + S+
Sbjct: 762 RRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQKIR--IEDLLHLTSGSTTTSSSSS 819
Query: 571 ---VLSILLRLRQICTNLALCPS-DVRS 594
+++++++ R++C + L D RS
Sbjct: 820 ASNLMNLVMQFRKVCNHPELFERRDARS 847
Score = 56 (24.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++ +
Sbjct: 556 GILADEMGLGKTVQSIAFL 574
Score = 40 (19.1 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 363 TWITQLEEHTVPGMLKTYMYYGDRTQDV 390
TW+ + + + G+L M G Q +
Sbjct: 544 TWLANIYDQGISGILADEMGLGKTVQSI 571
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 237 (88.5 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 51/152 (33%), Positives = 87/152 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++FSQ +++ +LE +K LRLDGS + +R ++E F P + + S +A
Sbjct: 2046 LIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFNAPN-SEYFIFVLSTRA 2104
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NL A V + + WNP ++ QA DR HRIGQK+ V+++RL+ +S+EE IL
Sbjct: 2105 GGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVLRLVTAHSVEESILARA 2164
Query: 838 DRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ KK+L ++ + + + +D ++L L
Sbjct: 2165 NFKKELDKKIIQAGQFNNKSNRSDRKKMLEDL 2196
Score = 192 (72.6 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 81/288 (28%), Positives = 138/288 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEEL---KMYDLVLTTYSTL 406
L+V P S S W + + P +K +YYGD R EE ++ V+TTY +
Sbjct: 1764 LVVVPLSTLSNWGQEFSKWA-P-KVKRVLYYGDKPARKSKFEEFIAPGQFNAVVTTYEYI 1821
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSF 465
I++ ++ + KI+W +I+DE H +KN ++ S + T+ +++ R ++TGTP+QN
Sbjct: 1822 -IKD---KNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQNSLP 1877
Query: 466 DLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKG----------LSRLQVLMSTISLRR 515
+L++L+ FL F ++ P AQ K + RL ++ LRR
Sbjct: 1878 ELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQRLHKVLRPFLLRR 1937
Query: 516 TKDKGLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
K K + P +EK ++S + K+YD + K KGV + ++G N +
Sbjct: 1938 LK-KEVEAQLPDKVEKVLKCDMSAFQAKMYDLI--KTKGVSK-LASSGGADGNPKLAKGL 1993
Query: 575 ---LLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQ 619
++LR+IC + L D +I N I + DLL +L+ L+
Sbjct: 1994 KNTYVQLRKICNHPYLFYDDEYNI-DDNLIR-YAGKFDLLDRLLPKLK 2039
Score = 64 (27.6 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++L++
Sbjct: 1732 GILADEMGLGKTIQTIALVS 1751
Score = 41 (19.5 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 826 RNSIEERILELQDRKKKLAREAFRRKGKDQRE 857
R+ +R E Q K+ RE R + +DQ+E
Sbjct: 2847 RDRDRDRDRERQKESKE-GRERDRERSRDQKE 2877
Score = 39 (18.8 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 675 SSPPESSDMDIAGK-TLKNFTSSKVSAXXXXXXXXRDKKPTTKSV 718
SS SD D K T K T+S ++KK T + +
Sbjct: 2334 SSSSSDSDSDFESKPTPKRTTTSDKPKSSKESNNRKEKKNTKEKL 2378
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 230 (86.0 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 64/177 (36%), Positives = 97/177 (54%)
Query: 671 SDLFSSPPESSDM--DIAGKTLKNFT-SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKML 727
+++FSS P+ + D A +T+ + S K+ R K K ++FS K+L
Sbjct: 390 NEVFSSFPDFMQLSKDAAFETISDPKYSGKMRVLQQLLNHFRKNKD--KVLLFSFSTKLL 447
Query: 728 ILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAA 787
+LE+ A+G RLDGS ++ R +++ EF N P + L S A G G+N A
Sbjct: 448 DVLEQYCIASGLDFRRLDGSTKSEDRIRIVREF-NRVPE-INICLVSTMAGGLGLNFVGA 505
Query: 788 SRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLA 844
+ V L +P WNPA + QA+DR +RIGQ +DVK+ RLI ++EE + Q K+ LA
Sbjct: 506 NVVILFDPTWNPANDLQAIDRAYRIGQCKDVKVFRLISLGTVEEMMYLRQVYKQLLA 562
Score = 175 (66.7 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 70/223 (31%), Positives = 111/223 (49%)
Query: 340 LNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ-DVEELKM--Y 396
+ K S KK LIV P SV W +L+ G K + +G + + D+ +K
Sbjct: 98 MKKESKCNPKKTFLIVAPLSVLYNWKDELDTW---GYFKVSVLHGSKKEGDLNRIKQGKC 154
Query: 397 DLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVT 456
++ LTTY TL + +L+ + I W VI+DE H IKN +Q ++T+ +L R +T
Sbjct: 155 EVALTTYETLRL---YLDE-LNNIGWSAVIVDEVHRIKNPKSQITQTMKSLKCNVRIGLT 210
Query: 457 GTPIQNGSFDLFSLMAF---------LQFEP-FS---VKSYWQSLIQRPLAQGNRKGLSR 503
GT +QN +L+ +M + + F+ FS + + +R LA G RK + +
Sbjct: 211 GTILQNNMNELWCVMDWAVPGLLGSRVHFKKKFSDPLERGQRHTATKRELATG-RKAMVK 269
Query: 504 LQVLMSTISLRRTKDKGLIGLQ-PKTIEKY-YVELSLEERKLY 544
L MS+ LRRTK LI Q PK ++ Y L+ ++ +Y
Sbjct: 270 LARKMSSWFLRRTKV--LISDQLPKKEDRMVYCSLTEFQKAVY 310
Score = 68 (29.0 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 249 RGGIFADDMGLGKTLTLLSLIA 270
RG I DDMGLGKT+ ++S +A
Sbjct: 53 RGCILGDDMGLGKTVQVISFLA 74
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 226 (84.6 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 66/209 (31%), Positives = 100/209 (47%)
Query: 663 LCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD--KKPTTKSVVF 720
+C HP DLFS P++ F K S K + ++F
Sbjct: 801 ICNHP----DLFSGGPKNLKTIPDDDEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLF 856
Query: 721 SQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGA 780
SQ R+ML +LE L+A + L++DG+ R +I + V L + + G
Sbjct: 857 SQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDT--SIFVFLLTTRVGGI 914
Query: 781 GVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRK 840
GVNLT A+RV + +P WNP+ + QA +R RIGQK+ V + RL+ +IEE+I Q K
Sbjct: 915 GVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFK 974
Query: 841 KKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ L + K +R ++DL L +L
Sbjct: 975 QFLTNRVLKDP-KQRRFFKSNDLYELFTL 1002
Score = 189 (71.6 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 68/274 (24%), Positives = 122/274 (44%)
Query: 346 FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL-----KMYDLVL 400
F G T+IVCP +V W+ + P + G TQ E+L + +++
Sbjct: 559 FKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQKKEKLIRDIAHCHGILI 618
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+YS + + ++ + + +W VILDE H I+N NA + R +++G+P+
Sbjct: 619 TSYSYIRL----MQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 674
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMS---TISLRRTK 517
QN +L+SL F+ + P+ G S +QV + LR T
Sbjct: 675 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 734
Query: 518 DKGLIGLQPKTIEKYYVELSL---EERKLYDELEGKAKGVVQDYINAGSLMRNYS---TV 571
+ L+ ++ + LSL E+ L+ L + V Q++I++ + R + +
Sbjct: 735 NPYLLRRMKSDVK---MSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVYRILNGDMQI 791
Query: 572 LSILLRLRQICTNLALCPSDVRSI--IPSNTIED 603
S L+ LR+IC + L +++ IP + ED
Sbjct: 792 FSGLVALRKICNHPDLFSGGPKNLKTIPDDDEED 825
Score = 67 (28.6 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLIA 270
GGI D+MGLGKT+ +++ +A
Sbjct: 523 GGILGDEMGLGKTIQIIAFLA 543
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 242 (90.2 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 65/203 (32%), Positives = 99/203 (48%)
Query: 648 SCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
S L + K CC C L++ PP++++ + L++ S
Sbjct: 746 SGFLNIMMELKKCCNHCY--LIK------PPDNNEFYNKQEALQHLIRSSGKLILLDKLL 797
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
R ++ + ++FSQ +ML +L E L+ F RLDGS+ + R Q ++ F G
Sbjct: 798 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 857
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
LL S +A G G+NL +A V + + WNP + QA R HRIGQK+ V I RL+ +
Sbjct: 858 FCFLL-STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 916
Query: 828 SIEERILELQDRKKKLAREAFRR 850
S+EE ILE +K L +R
Sbjct: 917 SVEEDILERAKKKMVLDHLVIQR 939
Score = 186 (70.5 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 68/255 (26%), Positives = 126/255 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-------RTQD-----VEELKMYDLVL 400
L+V P S ++W Q E T + +Y GD RT + + LK ++++L
Sbjct: 534 LLVVPLSTLTSW--QREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLK-FNILL 590
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
TTY L ++++L + W + +DEAH +KN ++ +T+ + + R ++TGTP+
Sbjct: 591 TTYEILLKDKAFLGG----LNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 646
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
QN +L+SL+ F+ E FS W+ + +G G + L + LRR K K
Sbjct: 647 QNSLKELWSLLHFIMPEKFSS---WEDF-EEEHGKGREYGYASLHKELEPFLLRRVK-KD 701
Query: 521 LIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDY--INAGSLMRNYSTVLSILLR 577
+ P +E+ +E+S +++ Y + + ++Y ++ GS + S L+I++
Sbjct: 702 VEKSLPAKVEQILRMEMSALQKQYYKWI------LTRNYKALSKGS-KGSTSGFLNIMME 754
Query: 578 LRQICTNLALC-PSD 591
L++ C + L P D
Sbjct: 755 LKKCCNHCYLIKPPD 769
Score = 55 (24.4 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 252 IFADDMGLGKTLTLLSLI 269
I AD+MGLGKT+ +S +
Sbjct: 503 ILADEMGLGKTIQTISFL 520
Score = 37 (18.1 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGN 497
FL P S + WQ IQ +Q N
Sbjct: 533 FLLVVPLSTLTSWQREIQTWASQMN 557
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 242 (90.2 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 65/203 (32%), Positives = 99/203 (48%)
Query: 648 SCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
S L + K CC C L++ PP++++ + L++ S
Sbjct: 745 SGFLNIMMELKKCCNHCY--LIK------PPDNNEFYNKQEALQHLIRSSGKLILLDKLL 796
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
R ++ + ++FSQ +ML +L E L+ F RLDGS+ + R Q ++ F G
Sbjct: 797 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 856
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
LL S +A G G+NL +A V + + WNP + QA R HRIGQK+ V I RL+ +
Sbjct: 857 FCFLL-STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 915
Query: 828 SIEERILELQDRKKKLAREAFRR 850
S+EE ILE +K L +R
Sbjct: 916 SVEEDILERAKKKMVLDHLVIQR 938
Score = 186 (70.5 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 68/255 (26%), Positives = 126/255 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-------RTQD-----VEELKMYDLVL 400
L+V P S ++W Q E T + +Y GD RT + + LK ++++L
Sbjct: 533 LLVVPLSTLTSW--QREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLK-FNILL 589
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
TTY L ++++L + W + +DEAH +KN ++ +T+ + + R ++TGTP+
Sbjct: 590 TTYEILLKDKAFLGG----LNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 645
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
QN +L+SL+ F+ E FS W+ + +G G + L + LRR K K
Sbjct: 646 QNSLKELWSLLHFIMPEKFSS---WEDF-EEEHGKGREYGYASLHKELEPFLLRRVK-KD 700
Query: 521 LIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDY--INAGSLMRNYSTVLSILLR 577
+ P +E+ +E+S +++ Y + + ++Y ++ GS + S L+I++
Sbjct: 701 VEKSLPAKVEQILRMEMSALQKQYYKWI------LTRNYKALSKGS-KGSTSGFLNIMME 753
Query: 578 LRQICTNLALC-PSD 591
L++ C + L P D
Sbjct: 754 LKKCCNHCYLIKPPD 768
Score = 55 (24.4 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 252 IFADDMGLGKTLTLLSLI 269
I AD+MGLGKT+ +S +
Sbjct: 502 ILADEMGLGKTIQTISFL 519
Score = 37 (18.1 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGN 497
FL P S + WQ IQ +Q N
Sbjct: 532 FLLVVPLSTLTSWQREIQTWASQMN 556
Score = 37 (18.1 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR 753
DKKP K + ++ ++ LL L A + RL G+ +K+R
Sbjct: 1293 DKKPQAKQLQ-TRADYLIKLLSRDL--AKKEAQRLSGAGGSKRR 1333
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 242 (90.2 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 65/203 (32%), Positives = 99/203 (48%)
Query: 648 SCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
S L + K CC C L++ PP++++ + L++ S
Sbjct: 744 SGFLNIMMELKKCCNHCY--LIK------PPDNNEFYNKQEALQHLIRSSGKLILLDKLL 795
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
R ++ + ++FSQ +ML +L E L+ F RLDGS+ + R Q ++ F G
Sbjct: 796 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 855
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
LL S +A G G+NL +A V + + WNP + QA R HRIGQK+ V I RL+ +
Sbjct: 856 FCFLL-STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 914
Query: 828 SIEERILELQDRKKKLAREAFRR 850
S+EE ILE +K L +R
Sbjct: 915 SVEEDILERAKKKMVLDHLVIQR 937
Score = 186 (70.5 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 68/255 (26%), Positives = 126/255 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-------RTQD-----VEELKMYDLVL 400
L+V P S ++W Q E T + +Y GD RT + + LK ++++L
Sbjct: 532 LLVVPLSTLTSW--QREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLK-FNILL 588
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
TTY L ++++L + W + +DEAH +KN ++ +T+ + + R ++TGTP+
Sbjct: 589 TTYEILLKDKAFLGG----LNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 644
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
QN +L+SL+ F+ E FS W+ + +G G + L + LRR K K
Sbjct: 645 QNSLKELWSLLHFIMPEKFSS---WEDF-EEEHGKGREYGYASLHKELEPFLLRRVK-KD 699
Query: 521 LIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDY--INAGSLMRNYSTVLSILLR 577
+ P +E+ +E+S +++ Y + + ++Y ++ GS + S L+I++
Sbjct: 700 VEKSLPAKVEQILRMEMSALQKQYYKWI------LTRNYKALSKGS-KGSTSGFLNIMME 752
Query: 578 LRQICTNLALC-PSD 591
L++ C + L P D
Sbjct: 753 LKKCCNHCYLIKPPD 767
Score = 55 (24.4 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 252 IFADDMGLGKTLTLLSLI 269
I AD+MGLGKT+ +S +
Sbjct: 501 ILADEMGLGKTIQTISFL 518
Score = 37 (18.1 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGN 497
FL P S + WQ IQ +Q N
Sbjct: 531 FLLVVPLSTLTSWQREIQTWASQMN 555
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 249 (92.7 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 58/133 (43%), Positives = 84/133 (63%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGF---KLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772
K ++F+QF K+L LLE+ L+ + K+ RLDGS N + R + I +F N P V L
Sbjct: 629 KVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNN-NPKFK-VFL 686
Query: 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEER 832
+S +A G G+NL AA V L++ WNP ++ QA+DRVHRIGQ VKI R ++++SIEE
Sbjct: 687 SSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEV 746
Query: 833 ILELQDRKKKLAR 845
++ K+ L R
Sbjct: 747 LISRSGSKRFLER 759
Score = 154 (59.3 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 38/127 (29%), Positives = 70/127 (55%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVEELKMYD---LVLTTYSTLA 407
L+V P S S W ++ + P +K Y G + + D++ L+ + ++LT+Y ++
Sbjct: 227 LVVVPVSTLSNWYNEIRKFA-P-KIKVTKYIGTKQERNDIDLLQQQETTNIILTSYE-IS 283
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
I + + + KI W +I+DE H +KN+ + + LN R ++TGTP+QN +L
Sbjct: 284 IRDF---NKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNEL 340
Query: 468 FSLMAFL 474
+SL+ F+
Sbjct: 341 WSLLNFI 347
Score = 64 (27.6 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKTL +S ++
Sbjct: 196 GILADEMGLGKTLQCISFLS 215
Score = 46 (21.3 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 501 LSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLY-DELEGK 550
+ L ++ LRR K + L PK ++ ++ ++K+Y D + K
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDK 448
Score = 37 (18.1 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 426 ILDEAHVIKNA 436
ILD+A VI+N+
Sbjct: 600 ILDQAEVIRNS 610
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 249 (92.7 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 58/133 (43%), Positives = 84/133 (63%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGF---KLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772
K ++F+QF K+L LLE+ L+ + K+ RLDGS N + R + I +F N P V L
Sbjct: 629 KVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNN-NPKFK-VFL 686
Query: 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEER 832
+S +A G G+NL AA V L++ WNP ++ QA+DRVHRIGQ VKI R ++++SIEE
Sbjct: 687 SSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEV 746
Query: 833 ILELQDRKKKLAR 845
++ K+ L R
Sbjct: 747 LISRSGSKRFLER 759
Score = 154 (59.3 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 38/127 (29%), Positives = 70/127 (55%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVEELKMYD---LVLTTYSTLA 407
L+V P S S W ++ + P +K Y G + + D++ L+ + ++LT+Y ++
Sbjct: 227 LVVVPVSTLSNWYNEIRKFA-P-KIKVTKYIGTKQERNDIDLLQQQETTNIILTSYE-IS 283
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
I + + + KI W +I+DE H +KN+ + + LN R ++TGTP+QN +L
Sbjct: 284 IRDF---NKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNEL 340
Query: 468 FSLMAFL 474
+SL+ F+
Sbjct: 341 WSLLNFI 347
Score = 64 (27.6 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKTL +S ++
Sbjct: 196 GILADEMGLGKTLQCISFLS 215
Score = 46 (21.3 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 501 LSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLY-DELEGK 550
+ L ++ LRR K + L PK ++ ++ ++K+Y D + K
Sbjct: 398 IKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDK 448
Score = 37 (18.1 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 426 ILDEAHVIKNA 436
ILD+A VI+N+
Sbjct: 600 ILDQAEVIRNS 610
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 241 (89.9 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 65/203 (32%), Positives = 98/203 (48%)
Query: 648 SCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
S L + K CC C L++ PP+ ++ + L++ S
Sbjct: 742 SGFLNIMMELKKCCNHCY--LIK------PPDDNEFYNKQEALQHLIRSSGKLILLDKLL 793
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
R ++ + ++FSQ +ML +L E L+ F RLDGS+ + R Q ++ F G
Sbjct: 794 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 853
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
LL S +A G G+NL +A V + + WNP + QA R HRIGQK+ V I RL+ +
Sbjct: 854 FCFLL-STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 912
Query: 828 SIEERILELQDRKKKLAREAFRR 850
S+EE ILE +K L +R
Sbjct: 913 SVEEDILERAKKKMVLDHLVIQR 935
Score = 187 (70.9 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 69/255 (27%), Positives = 126/255 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-------RTQD-----VEELKMYDLVL 400
L+V P S ++W Q E T + +Y GD RT + + LK ++++L
Sbjct: 530 LLVVPLSTLTSW--QREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLK-FNILL 586
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
TTY L ++S+L + W + +DEAH +KN ++ +T+ + + R ++TGTP+
Sbjct: 587 TTYEILLKDKSFLGG----LNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 642
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
QN +L+SL+ F+ E FS W+ + +G G + L + LRR K K
Sbjct: 643 QNSLKELWSLLHFIMPEKFSS---WEDF-EEEHGKGREYGYASLHKELEPFLLRRVK-KD 697
Query: 521 LIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDY--INAGSLMRNYSTVLSILLR 577
+ P +E+ +E+S +++ Y + + ++Y ++ GS + S L+I++
Sbjct: 698 VEKSLPAKVEQILRMEMSALQKQYYKWI------LTRNYKALSKGS-KGSTSGFLNIMME 750
Query: 578 LRQICTNLALC-PSD 591
L++ C + L P D
Sbjct: 751 LKKCCNHCYLIKPPD 765
Score = 55 (24.4 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 252 IFADDMGLGKTLTLLSLI 269
I AD+MGLGKT+ +S +
Sbjct: 499 ILADEMGLGKTIQTISFL 516
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 214 (80.4 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 67/215 (31%), Positives = 105/215 (48%)
Query: 337 VGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDV 390
VG LN F L++CP SV S W ++E PG L Y GD+ QD+
Sbjct: 83 VGRLNDEGPF------LVLCPLSVLSNWKEEMERFA-PG-LSCVTYTGDKEERARLQQDL 134
Query: 391 EELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
+ + ++LTTY + S+L+S W + +DEAH +KN ++ RT++ +A
Sbjct: 135 RQESGFHVLLTTYEICLKDASFLKS----FSWSVLAVDEAHRLKNQSSLLHRTLSEFSAV 190
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPL-AQGNRKGLSRLQVLMS 509
R ++TGTPIQN +L+SL+ ++ + F + + +QR + K S L L+
Sbjct: 191 FRLLLTGTPIQNSLRELYSLLCVVEPDLFC-REQVEDFVQRYQDIEKESKSASELHRLLQ 249
Query: 510 TISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLY 544
LRR K + L KT Y +S ++K Y
Sbjct: 250 PFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYY 284
Score = 210 (79.0 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASLK 776
++FSQ ML +L++ + G+ R+DGS+ ++R I+ FGN P V L S +
Sbjct: 361 LLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQ----PIFVFLLSTR 416
Query: 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
A G G+NLTAA V ++ +NP + QA R HRIGQ + VK++RLI R+++EE +
Sbjct: 417 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 476
Query: 837 QDRKKKL 843
K +L
Sbjct: 477 AASKLQL 483
Score = 55 (24.4 bits), Expect = 5.7e-15, Sum P(5) = 5.7e-15
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 532 YYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVL 572
Y E S E+RK +++L K +++ + G +RN +VL
Sbjct: 585 YSKEPSKEDRKSFEQLVNLQKTLLEKTSHGGRTLRNKGSVL 625
Score = 52 (23.4 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I D+MGLGKT ++L+
Sbjct: 60 GCILGDEMGLGKTCQTIALL 79
Score = 44 (20.5 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 835 ELQDRKKKLAREAFRRK 851
EL+DR+KK A +RK
Sbjct: 644 ELEDRRKKRQEAAAKRK 660
Score = 37 (18.1 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 204 HQKEGLGWLVR 214
+Q EG+ WLV+
Sbjct: 43 YQLEGVNWLVQ 53
Score = 37 (18.1 bits), Expect = 2.3e-11, Sum P(4) = 2.3e-11
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 554 VVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRS 594
++ D + G + + ++ ++ RL L LCP V S
Sbjct: 62 ILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLS 102
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 216 (81.1 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 52/145 (35%), Positives = 81/145 (55%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
V+FSQF ++L +L+ +++ K LR DGS R +I++F V L S KA
Sbjct: 781 VLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFY--ADESINVFLLSTKA 838
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NL A+ V L + +NP + QA DR HR+GQK++V + + +V+++IEE I L
Sbjct: 839 GGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLA 898
Query: 838 DRKKKLAREAFRRKGKDQREVSTDD 862
+ K +A +A + E DD
Sbjct: 899 NAK--IALDATLSGNAETVEAEDDD 921
Score = 200 (75.5 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 74/265 (27%), Positives = 127/265 (47%)
Query: 329 DDNVKGKSVGMLNKSSSFMGKKIT---LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
D+ GK+ + S M K I L++ P S W+ + + P LK +YYG
Sbjct: 412 DEMGLGKTCQTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAKFC-P-KLKIELYYGS 469
Query: 386 RTQDVEELK--------MYDLVLTTYSTLAIEESWLESPVKKIEWWRV-ILDEAHVIKNA 436
+ + EE++ Y+++LTTY A ++ + + + + V + DE H +KN
Sbjct: 470 QVER-EEIRERINSNKDSYNVMLTTYRLAATSKA--DRLFLRNQKFNVCVYDEGHYLKNR 526
Query: 437 NAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQ---FEP--------FSVKSYW 485
+++ R + ++ A R ++TGTP+QN +L SL+AF+ F+ F++K
Sbjct: 527 ASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSP 586
Query: 486 QSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYD 545
+S +R L R +SR +++M+ LRR K + L L KT + E S EER+ YD
Sbjct: 587 ESDFERALLSEQR--VSRAKMMMAPFVLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYD 644
Query: 546 ELEGKAKGVVQDYINAGSLMRNYST 570
+ K V ++ + N T
Sbjct: 645 DFASKQS--VNSLLDENVMKTNLDT 667
Score = 58 (25.5 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 251 GIFADDMGLGKTLTLLSLIAL 271
GI AD+MGLGKT ++ +L
Sbjct: 408 GILADEMGLGKTCQTIAFFSL 428
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 242 (90.2 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 65/203 (32%), Positives = 99/203 (48%)
Query: 648 SCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
S L + K CC C L++ PP++++ + L++ S
Sbjct: 728 SGFLNIMMELKKCCNHCY--LIK------PPDNNEFYNKQEALQHLIRSSGKLILLDKLL 779
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
R ++ + ++FSQ +ML +L E L+ F RLDGS+ + R Q ++ F G
Sbjct: 780 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 839
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
LL S +A G G+NL +A V + + WNP + QA R HRIGQK+ V I RL+ +
Sbjct: 840 FCFLL-STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 898
Query: 828 SIEERILELQDRKKKLAREAFRR 850
S+EE ILE +K L +R
Sbjct: 899 SVEEDILERAKKKMVLDHLVIQR 921
Score = 186 (70.5 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 68/255 (26%), Positives = 126/255 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-------RTQD-----VEELKMYDLVL 400
L+V P S ++W Q E T + +Y GD RT + + LK ++++L
Sbjct: 516 LLVVPLSTLTSW--QREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLK-FNILL 572
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
TTY L ++++L + W + +DEAH +KN ++ +T+ + + R ++TGTP+
Sbjct: 573 TTYEILLKDKAFLGG----LNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 628
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
QN +L+SL+ F+ E FS W+ + +G G + L + LRR K K
Sbjct: 629 QNSLKELWSLLHFIMPEKFSS---WEDF-EEEHGKGREYGYASLHKELEPFLLRRVK-KD 683
Query: 521 LIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDY--INAGSLMRNYSTVLSILLR 577
+ P +E+ +E+S +++ Y + + ++Y ++ GS + S L+I++
Sbjct: 684 VEKSLPAKVEQILRMEMSALQKQYYKWI------LTRNYKALSKGS-KGSTSGFLNIMME 736
Query: 578 LRQICTNLALC-PSD 591
L++ C + L P D
Sbjct: 737 LKKCCNHCYLIKPPD 751
Score = 55 (24.4 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 252 IFADDMGLGKTLTLLSLI 269
I AD+MGLGKT+ +S +
Sbjct: 485 ILADEMGLGKTIQTISFL 502
Score = 44 (20.5 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 824 IVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLR 864
I + S E+R + ++ K++L RE ++ +D++++ D +
Sbjct: 1382 IKKESEEKREAKEKENKRELKREI--KEKEDKKDIKEKDFK 1420
Score = 37 (18.1 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGN 497
FL P S + WQ IQ +Q N
Sbjct: 515 FLLVVPLSTLTSWQREIQTWASQMN 539
Score = 37 (18.1 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR 753
DKKP K + ++ ++ LL L A + RL G+ +K+R
Sbjct: 1276 DKKPQAKQLQ-TRADYLIKLLSRDL--AKKEAQRLSGAGGSKRR 1316
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 242 (90.2 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 65/203 (32%), Positives = 99/203 (48%)
Query: 648 SCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
S L + K CC C L++ PP++++ + L++ S
Sbjct: 758 SGFLNIMMELKKCCNHCY--LIK------PPDNNEFYNKQEALQHLIRSSGKLILLDKLL 809
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
R ++ + ++FSQ +ML +L E L+ F RLDGS+ + R Q ++ F G
Sbjct: 810 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 869
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
LL S +A G G+NL +A V + + WNP + QA R HRIGQK+ V I RL+ +
Sbjct: 870 FCFLL-STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 928
Query: 828 SIEERILELQDRKKKLAREAFRR 850
S+EE ILE +K L +R
Sbjct: 929 SVEEDILERAKKKMVLDHLVIQR 951
Score = 186 (70.5 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 68/255 (26%), Positives = 126/255 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-------RTQD-----VEELKMYDLVL 400
L+V P S ++W Q E T + +Y GD RT + + LK ++++L
Sbjct: 546 LLVVPLSTLTSW--QREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLK-FNILL 602
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
TTY L ++++L + W + +DEAH +KN ++ +T+ + + R ++TGTP+
Sbjct: 603 TTYEILLKDKAFLGG----LNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 658
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG 520
QN +L+SL+ F+ E FS W+ + +G G + L + LRR K K
Sbjct: 659 QNSLKELWSLLHFIMPEKFSS---WEDF-EEEHGKGREYGYASLHKELEPFLLRRVK-KD 713
Query: 521 LIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDY--INAGSLMRNYSTVLSILLR 577
+ P +E+ +E+S +++ Y + + ++Y ++ GS + S L+I++
Sbjct: 714 VEKSLPAKVEQILRMEMSALQKQYYKWI------LTRNYKALSKGS-KGSTSGFLNIMME 766
Query: 578 LRQICTNLALC-PSD 591
L++ C + L P D
Sbjct: 767 LKKCCNHCYLIKPPD 781
Score = 55 (24.4 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 252 IFADDMGLGKTLTLLSLI 269
I AD+MGLGKT+ +S +
Sbjct: 515 ILADEMGLGKTIQTISFL 532
Score = 37 (18.1 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 473 FLQFEPFSVKSYWQSLIQRPLAQGN 497
FL P S + WQ IQ +Q N
Sbjct: 545 FLLVVPLSTLTSWQREIQTWASQMN 569
Score = 37 (18.1 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR 753
DKKP K + ++ ++ LL L A + RL G+ +K+R
Sbjct: 1304 DKKPQAKQLQ-TRADYLIKLLSRDL--AKKEAQRLSGAGGSKRR 1344
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 276 (102.2 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 60/153 (39%), Positives = 93/153 (60%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M+ KKR++V+++F +P +L+S
Sbjct: 521 KVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSS- 579
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ +IEE+IL+
Sbjct: 580 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQ 639
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L S
Sbjct: 640 RQTHKKSLSSTIIDNNESSEKHFTRDDLKDLFS 672
Score = 129 (50.5 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 59/252 (23%), Positives = 114/252 (45%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYST----LAI 408
++V P S+ W + + +L M G + + L+ + + + T ++
Sbjct: 220 IVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLISY 279
Query: 409 EESWLESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
E + + + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 280 ETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEY 339
Query: 468 FSLMAFLQFEPFSV-----KSYWQSLIQRPLA---QGNRK-GLSRLQVLMSTIS---LRR 515
FSL+ F+ E +++ S+++ A +G RK + + Q L+ + +RR
Sbjct: 340 FSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRR 399
Query: 516 TKDKGLIGLQPKTIEKYY-VELSLEERKLYDEL--EGKAKGVVQDYINAGSLMRNYSTVL 572
T ++ L P E V+L+ + +LY + + + D SL T L
Sbjct: 400 T-NQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNSDQVRRSLADCNEKASL-----TAL 453
Query: 573 SILLRLRQICTN 584
+ + L++IC++
Sbjct: 454 ADITTLKKICSH 465
Score = 61 (26.5 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL ++L+
Sbjct: 183 GCIMADEMGLGKTLQCVTLV 202
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 289 (106.8 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 77/216 (35%), Positives = 110/216 (50%)
Query: 663 LCRHP-LLQ--SDLFSS----PPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTT 715
+C HP LL DL PP ++ G+ +N SS K T
Sbjct: 568 ICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRD-RNIDSSLSGKMLVLERMLYQIKQET 626
Query: 716 --KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773
K V+ S + L L E+ +A G+K LRLDG+MN KR ++++ F +P LL+
Sbjct: 627 DDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLS 686
Query: 774 SLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERI 833
S KA G G+NL A+R+ L +P WNPA ++QA+ RV R GQK+D + R I +IEE+I
Sbjct: 687 S-KAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKI 745
Query: 834 LELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ Q K+ L+ +R S D+LR L L
Sbjct: 746 FQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQL 781
Score = 116 (45.9 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 39/145 (26%), Positives = 66/145 (45%)
Query: 340 LNKSSSFMGKKI---TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD--VEELK 394
L K S GK +I CP S+ W +L + + ++ G ++ + L+
Sbjct: 311 LLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQ 370
Query: 395 MYDLV---LTTYSTLAIEESWLESPVKKI---EWWRVILDEAHVIKNANAQQSRTVTNLN 448
+ V T L L S V+ + E ++ DE H +KN+++ + LN
Sbjct: 371 QWASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLN 430
Query: 449 AKRRWVVTGTPIQNGSFDLFSLMAF 473
+RR +++GTPIQN + FSL+ F
Sbjct: 431 VQRRVILSGTPIQNDLSEYFSLLNF 455
Score = 61 (26.5 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL ++L+
Sbjct: 289 GCIMADEMGLGKTLQCIALL 308
Score = 37 (18.1 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 109 KGNRFKIPCQVHIFTRLEMFSIVKDVILEG 138
+G+R K + FT L+ ++ + VIL G
Sbjct: 411 EGHRLKNSDSL-TFTALDKLNVQRRVILSG 439
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 251 (93.4 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 69/195 (35%), Positives = 91/195 (46%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKT-LKNFTSSKVSAXXXXXXXX 708
+L + K CC HP L F S DI + L S
Sbjct: 897 LLNIVVELKKCC---NHPFL----FESADHGYGGDINDNSKLDKIILSSGKLVILDKLLV 949
Query: 709 RDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
R ++ + ++FSQ +ML +L E L GF+ RLDGS A+ R Q ++ F P
Sbjct: 950 RLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDF 1009
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
LL S +A G G+NL A V + + WNP + QAM R HRIGQ+E V I R + S
Sbjct: 1010 CFLL-STRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKS 1068
Query: 829 IEERILELQDRKKKL 843
+EE ILE RK L
Sbjct: 1069 VEEEILERAKRKMVL 1083
Score = 181 (68.8 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 73/263 (27%), Positives = 128/263 (48%)
Query: 337 VGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT-----QDVE 391
+G L + G L+V P S + W + + +PGM +Y G R Q E
Sbjct: 664 LGFLQNTQQIPGP--FLVVVPLSTLANWAKEFRKW-LPGM-NIIVYVGTRASREVCQQYE 719
Query: 392 ---ELKM-----YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRT 443
E K+ ++ +LTTY + +++ L KI+W +++DEAH +KN+ AQ
Sbjct: 720 FYNEKKVGRPIKFNALLTTYEVVLKDKAVLS----KIKWIYLMVDEAHRLKNSEAQLYTA 775
Query: 444 VTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSR 503
+ + K + ++TGTP+QN +L++L+ FL F K + + L+ N L+
Sbjct: 776 LLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKN-LSSFNESELAN 834
Query: 504 LQVLMSTISLRRT-KDKGLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINA 561
L + + LRR KD L PK IE+ VE+S +++ Y + + D +N
Sbjct: 835 LHLELRPHILRRVIKDVEK-SLPPK-IERILRVEMSPLQKQYYKWILERN---FHD-LNK 888
Query: 562 GSLMRNYSTVLSILLRLRQICTN 584
G + N ++L+I++ L++ C +
Sbjct: 889 G-VRGNQVSLLNIVVELKKCCNH 910
Score = 56 (24.8 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 252 IFADDMGLGKTLTLLSLIALDKCAGVAPG 280
I AD+MGLGKT+ +S++ + PG
Sbjct: 647 ILADEMGLGKTVQSVSMLGFLQNTQQIPG 675
Score = 42 (19.8 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDY 558
I +Q K +E+ + RKL ++ E G ++DY
Sbjct: 592 IAVQGKMVEQQRTKGKASLRKLDEQPEWLIGGTLRDY 628
Score = 39 (18.8 bits), Expect = 2.4e-30, Sum P(4) = 2.4e-30
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELP 222
VI+ L+ HQ +G+G V+ N +P
Sbjct: 421 VIEKVLW-HQLKGMGEDVQTNNKSTVP 446
Score = 38 (18.4 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 800 AVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQ--RE 857
+VEE+ ++R R + + I +L +E+R + K A R G ++ +E
Sbjct: 1068 SVEEEILERAKRKMVLDHLVIQKLNAEGRLEKRETKKGSNFDKNELSAILRFGAEELFKE 1127
Query: 858 VSTDD 862
D+
Sbjct: 1128 DKNDE 1132
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 240 (89.5 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 53/137 (38%), Positives = 79/137 (57%)
Query: 709 RDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
R K + +++SQ +M+ LLEE + +RLDGS +R ++ +F +
Sbjct: 1143 RLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQSRTD--I 1200
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
V L S +A G G+NLTAA V + WNP V++QAMDR HR+GQ + V + RLI + +
Sbjct: 1201 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGT 1260
Query: 829 IEERILELQDRKKKLAR 845
IEERIL+ K ++ R
Sbjct: 1261 IEERILQRAKEKSEIQR 1277
Score = 176 (67.0 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 65/264 (24%), Positives = 127/264 (48%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLA----I 408
LI+ P S + W + VP K Y+G+ D + ++ + T Y+ A +
Sbjct: 572 LIISPASTLNNWHQEFSRF-VP-KFKVLPYWGN-PHDRKVIRKFWSQKTLYTQNAPFHVV 628
Query: 409 EESW--LESPVK---KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNG 463
S+ + VK +++W ++LDEA +K++ + + + + + R ++TGTPIQN
Sbjct: 629 ITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNT 688
Query: 464 SFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQG----NRKGLSRLQVLMSTISLRRT 516
+L++L+ F+ F+ + W S A+ + LSRL +++ LRR
Sbjct: 689 MAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRI 748
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINA--GSLMRNYST---V 571
K L K Y +L+ +R LY L+ K ++D + + GS + +ST +
Sbjct: 749 KKDVENELSDKIEILTYCQLTSRQRLLYQALKNKIS--IEDLLQSSMGSAQQAHSTTSSL 806
Query: 572 LSILLRLRQICTNLALCP-SDVRS 594
++++++ R++C + L ++RS
Sbjct: 807 MNLVMQFRKVCNHPDLFERQEIRS 830
Score = 64 (27.6 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++L+A
Sbjct: 540 GILADEMGLGKTVQSIALLA 559
Score = 39 (18.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDV 390
W+ L E + G+L M G Q +
Sbjct: 529 WLANLYEQGINGILADEMGLGKTVQSI 555
Score = 39 (18.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 826 RNSIEERILELQDRKKKLAREAFRRKGKDQRE 857
+ +EE ++++RK+K + A R++ +D E
Sbjct: 1316 KRQLEESS-KVKERKRKREKYAERKRKEDDPE 1346
Score = 38 (18.4 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 819 KIVRLIVRNSIEERILEL-QDRKKKLAREAFRRKGKDQRE 857
++V L++ + E+ L L Q+ K++L + ++ K +RE
Sbjct: 1294 EVVSLLLDDEELEKKLRLRQEEKRQLEESSKVKERKRKRE 1333
Score = 37 (18.1 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 520 GLIGLQPKTIEKYYVELSLEERKLYDELEGKAK 552
GL+ E+ L L+++K+ +E + KAK
Sbjct: 194 GLLSTHDPFYEQQRHLLGLKKKKIKEEKKCKAK 226
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 223 (83.6 bits), Expect = 2.7e-30, Sum P(3) = 2.7e-30
Identities = 50/133 (37%), Positives = 80/133 (60%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
+K K ++FS K+L +L++ A+G RLDGS +++R ++++EF + +
Sbjct: 519 RKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQD--VNI 576
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S A G G+N A+ V L +P WNPA + QA+DR +RIGQ DVK++RLI ++E
Sbjct: 577 CLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVE 636
Query: 831 ERILELQDRKKKL 843
E + Q K++L
Sbjct: 637 EIMYLRQVYKQQL 649
Score = 174 (66.3 bits), Expect = 2.7e-30, Sum P(3) = 2.7e-30
Identities = 62/241 (25%), Positives = 111/241 (46%)
Query: 322 KTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYM 381
K +++N+ + + K KK+ LIV P SV W +L+ G + +
Sbjct: 168 KGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTW---GYFRVTV 224
Query: 382 YYGDRTQDVEELKMY----DLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNAN 437
+G + +D E L++ ++ LTTY TL + LE + +EW +I+DEAH IKN
Sbjct: 225 LHGSK-KDNELLRLKQRKCEIALTTYETLRL---CLEE-LNSLEWSAIIVDEAHRIKNPK 279
Query: 438 AQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN 497
A+ + + + K R +TGT +QN +L+ +M + + +++ P+ G
Sbjct: 280 ARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQ 339
Query: 498 RKGLSRLQVLMSTISLRRTKDK--GLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVV 555
R ++ ++ ++ R K G + KT+ K + E+R +Y L K V
Sbjct: 340 RHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKK-EDRMVYCSLTDFQKAVY 398
Query: 556 Q 556
Q
Sbjct: 399 Q 399
Score = 69 (29.3 bits), Expect = 2.7e-30, Sum P(3) = 2.7e-30
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 249 RGGIFADDMGLGKTLTLLSLIA 270
RG I DDMGLGKT+ ++S +A
Sbjct: 141 RGCILGDDMGLGKTIQVISFLA 162
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 224 (83.9 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 56/156 (35%), Positives = 88/156 (56%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 862 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 919
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 920 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 979
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
E +L++ +K KL ++ D+ + D +L
Sbjct: 980 ESMLKINQQKLKLEQDMTTVDEADEGSMPADIATLL 1015
Score = 187 (70.9 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 74/291 (25%), Positives = 142/291 (48%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVE-ELKMYDLVLTTYST 405
LIV P S W+ ++ P L YYG +R Q ++ + + Y++++TTY+
Sbjct: 544 LIVVPASTIDNWLREVNLWC-PS-LNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNC 601
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S ++++ I DE H++KN + + + + +NA+ R ++TGTP+QN
Sbjct: 602 -AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLL 660
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K+
Sbjct: 661 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKE 720
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ L L PK +S ++ +LY L + K IN +L +N + + +++++L
Sbjct: 721 EVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLK----KSIN--NLEKN-TEMCNVMMQL 773
Query: 579 RQICTNLAL-----CPSDVRSIIPSNTIEDV--SNNPDLLKKLVEVLQDGE 622
R++ + L P ++ + E NPDL+ + +EV+ D E
Sbjct: 774 RKMANHPLLHRQYYTPEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 824
Score = 62 (26.9 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 513 GILADEMGLGKTIQAIAFLA 532
Score = 41 (19.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 22/129 (17%), Positives = 51/129 (39%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 465 TKQVTMLTGNGGGWNREQPSLLNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 523
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV 444
Q + L ++ + + S +++ ++++ W L+ V+ +Q+ R
Sbjct: 524 TIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPSLN---VLCYYGSQEERKQ 580
Query: 445 TNLNAKRRW 453
N ++
Sbjct: 581 IRFNIHNKY 589
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 262 (97.3 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 70/214 (32%), Positives = 110/214 (51%)
Query: 663 LCRHPLLQSDLFSSPPESSDMDIA-------GKTLKNFTSSKVSAXXXXXXXXRDKKPTT 715
LC HP L D + + + + K ++ S K+ R + +
Sbjct: 456 LCNHPALIYDKCVAEEDGFEGTLGIFPPGYNSKAVEPQLSGKMLVLDYILAVTRSRS-SD 514
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M+ KKRA+V+E F +P +L+S
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS- 573
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+ + +P WNPA +EQAM RV R GQK+ I RL+ +IEE+I +
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQ 633
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
Q KK L+ + +R S +L+ L +L
Sbjct: 634 RQSHKKALSSCVVDEEQDVERHFSLGELKELFTL 667
Score = 138 (53.6 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 62/259 (23%), Positives = 122/259 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE-ELKMY----------DLVLT 401
++V P S+ W ++E+ + G ++ G +++ +L+ + +++
Sbjct: 215 VVVSPSSLVKNWYNEVEKW-LGGRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILII 273
Query: 402 TYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQ 461
+Y T + L KK VI DE H +KN+ Q + + +LN RR +++GTPIQ
Sbjct: 274 SYETFRLHVGVL----KKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQ 329
Query: 462 NGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPL--------AQGNR-KGLSRLQVLMSTIS 512
N + FSL+ F+ ++ + P+ ++ +R +G RL+ L+ ++
Sbjct: 330 NDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVN 389
Query: 513 ---LRRTKDKGLIGLQPKTIEKYYV-ELSLEERKLYDELEGKAKGVVQDYINAGSLMRNY 568
+RRT D L P IE+ L+ + +LY +AK ++ + G + +
Sbjct: 390 RCLIRRTSDI-LSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKP--EEELREGKM--SV 444
Query: 569 STVLSILLRLRQICTNLAL 587
S+ LS + L+++C + AL
Sbjct: 445 SS-LSSITSLKKLCNHPAL 462
Score = 64 (27.6 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 241 TDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
T +R G I AD+MGLGKTL ++L+
Sbjct: 169 TSRRIPGSHGCIMADEMGLGKTLQCITLM 197
Score = 37 (18.1 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 196 VIKSELFVHQKEGLGWLVRRENSEELP 222
++ L HQ+EG+ +L S +P
Sbjct: 148 ILSKVLRPHQREGVKFLWECVTSRRIP 174
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 277 (102.6 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 61/153 (39%), Positives = 91/153 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M KKR++V++ F +P +L+S
Sbjct: 512 KVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSS- 570
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ SIEE+IL+
Sbjct: 571 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 630
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L S
Sbjct: 631 RQTHKKSLSSTIIDNNESVEKHFTRDDLKDLFS 663
Score = 129 (50.5 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 62/277 (22%), Positives = 123/277 (44%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYS-----TLA 407
++V P S+ W + + M M G + + L+ + + +T ++
Sbjct: 210 IVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTSTRCGTPVLLIS 269
Query: 408 IEESWLESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E L + + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 270 YETFRLYAHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 329
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
FSL+ F+ E + ++ + + +G + + +L +T++ LIGL
Sbjct: 330 YFSLVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTE---RERALLKTQE--LIGLVN 384
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLA 586
+ I + ++ L L K + VV + A L + + L+ Q+C +LA
Sbjct: 385 QCIIRRTNQI------LTKYLPVKFEMVVCAKLTAVQLQ-----IYTNFLKSDQVCRSLA 433
Query: 587 LC--PSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDG 621
C + + ++ T++ + N+PDL+ + + + G
Sbjct: 434 DCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKG 470
Score = 58 (25.5 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I AD+MGLGKTL ++L
Sbjct: 173 GCIMADEMGLGKTLQCVTL 191
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 215 (80.7 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 62/199 (31%), Positives = 103/199 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDVEELKMYDLVLTTYSTL 406
LI+CP SV S W ++E PG L Y GD+ QD+++ + ++LTTY
Sbjct: 101 LILCPLSVLSNWKEEMERFA-PG-LSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEIC 158
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ S+L+S W +++DEAH +KN ++ +T++ + ++TGTPIQN +
Sbjct: 159 LKDASFLKS----FPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 214
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPL-AQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQ 525
L+SL++F++ + FS K + +QR + + S L L+ LRR K + L
Sbjct: 215 LYSLLSFVEPDLFS-KEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELP 273
Query: 526 PKTIEKYYVELSLEERKLY 544
KT Y +S ++K Y
Sbjct: 274 RKTEVVIYHGMSALQKKYY 292
Score = 206 (77.6 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 47/126 (37%), Positives = 72/126 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++FSQ +ML +L++ L G+ R+DGS+ ++R I+ FG P S +A
Sbjct: 369 LLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQ----PIFTFLSTRA 424
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NLTAA V + +NP + QA R HRIGQ + VK++RLI R+++EE +
Sbjct: 425 GGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKA 484
Query: 838 DRKKKL 843
K +L
Sbjct: 485 ASKLQL 490
Score = 50 (22.7 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I D+MGLGKT ++L
Sbjct: 68 GCILGDEMGLGKTCQTIAL 86
Score = 50 (22.7 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 532 YYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
Y E S E+R+ +++L K +++ G L+RN +V
Sbjct: 581 YSKEPSKEDRESFEQLVNLQKTLLEKTSQEGRLLRNKGSV 620
Score = 50 (22.7 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 815 KEDVKIVRLIVRNSIEERIL---ELQDRKKKLAREAFRRK 851
K V I L+ ++ +RIL EL+DR+K+ A +RK
Sbjct: 617 KGSVPIPGLVEGSTKRKRILSPEELEDRRKRRQEAAAKRK 656
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 242 (90.2 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
Identities = 65/184 (35%), Positives = 92/184 (50%)
Query: 664 CRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQF 723
C HP L + P + + +KN S K KK K ++FSQ
Sbjct: 571 CNHPYLIE--YPLDPATQQFKVDEDLVKN--SGKFLLLDRMLPEL--KKRGHKVLMFSQM 624
Query: 724 RKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL--ASLKASGAG 781
ML +L + GFK RLDGSM+ R + + +F N P V L S +A G G
Sbjct: 625 TMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNND----PEVFLFLVSTRAGGLG 680
Query: 782 VNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841
+NLTAA V + + WNP + QA DR HRIGQ + V + RL+ N+I+++I+E K+
Sbjct: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
Query: 842 KLAR 845
KL +
Sbjct: 741 KLEK 744
Score = 160 (61.4 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
Identities = 59/214 (27%), Positives = 105/214 (49%)
Query: 354 IVCPP-SVFSTWITQLEEHT--VPGMLKTYMYYG---DRTQDVEE-------LKMYDLVL 400
+VC P S W+++ + T +P ML Y+G +R + V + LK++ +V+
Sbjct: 274 LVCGPLSTLPNWMSEFKRFTPEIPLML----YHGAQQERRKLVRKIHGRQGSLKIHPVVI 329
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T++ + + L+S W +I+DE H IKN N + R + NA + ++TGTP+
Sbjct: 330 TSFEIAMRDRNALQSCF----WKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPL 385
Query: 461 QNGSFDLFSLMAFLQFEPFS-VKSY--W---QSLIQRP---LAQGNRKG-LSRLQVLMST 510
QN +L+SL+ FL + F +KS+ W S+ + +A+ + L L +++
Sbjct: 386 QNNLAELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKEQNILHMLHQILTP 445
Query: 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLY 544
LRR K + + PK Y L+ ++ Y
Sbjct: 446 FLLRRLKSDVALEVPPKREVVVYAPLAKKQETFY 479
Score = 71 (30.1 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKT+ ++ IAL GV PG
Sbjct: 243 GILADEMGLGKTIQCIATIALMVERGV-PG 271
Score = 37 (18.1 bits), Expect = 3.1e-30, Sum P(4) = 3.1e-30
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILM 867
+ ++EL + + RE KG ++ +S DL +L+
Sbjct: 769 QELIELL-KSRDYEREV---KGSKEKVISDKDLELLL 801
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 243 (90.6 bits), Expect = 3.4e-30, Sum P(6) = 3.4e-30
Identities = 63/175 (36%), Positives = 92/175 (52%)
Query: 673 LFSSPPES--SDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILL 730
L S P++ S + I GK S K+ A R K + +++SQ +M+ LL
Sbjct: 1073 LLSIRPQNGWSFIRIPGKESLITDSGKLYALDILLT--RLKSQGHRVLIYSQMTRMIDLL 1130
Query: 731 EEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRV 790
EE + +RLDGS +R ++ +F V L S +A G G+NLTAA V
Sbjct: 1131 EEYMVYRKHTYMRLDGSSKISERRDMVADFQTRND--IFVFLLSTRAGGLGINLTAADTV 1188
Query: 791 FLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAR 845
+ WNP V++QAMDR HR+GQ + V + RLI + +IEERIL+ K ++ R
Sbjct: 1189 IFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQR 1243
Score = 181 (68.8 bits), Expect = 3.4e-30, Sum P(6) = 3.4e-30
Identities = 56/248 (22%), Positives = 121/248 (48%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYD------LVLTTYSTL 406
LI+ P S + W + VP K Y+G+ ++ +Y +V+T+Y +
Sbjct: 573 LIISPASTLNNWHQEFTRF-VP-KFKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQLV 630
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ + + +++W ++LDEA +K++++ + + + + R ++TGTPIQN +
Sbjct: 631 VQDVKYFQ----RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAE 686
Query: 467 LFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQG----NRKGLSRLQVLMSTISLRRTKDK 519
L++L+ F+ F+ + W S A+ + LSRL +++ LRR K
Sbjct: 687 LWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKD 746
Query: 520 GLIGLQPKTIEKYYVELSLEERKLYDELEGKA--KGVVQDYINAGSLMRNY-STVLSILL 576
L K Y +L+ ++ LY L+ K + ++Q + + +N S+++++++
Sbjct: 747 VENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVM 806
Query: 577 RLRQICTN 584
+ R++C +
Sbjct: 807 QFRKVCNH 814
Score = 64 (27.6 bits), Expect = 3.4e-30, Sum P(6) = 3.4e-30
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++L+A
Sbjct: 541 GILADEMGLGKTVQSIALLA 560
Score = 42 (19.8 bits), Expect = 3.4e-30, Sum P(6) = 3.4e-30
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 44 GTISGREMVGLVREPLNPYDSNAVKVLNTRTDQ 76
G SG GL LNPY N V +++D+
Sbjct: 82 GETSGASSSGL----LNPYSLNGVLQSESKSDK 110
Score = 40 (19.1 bits), Expect = 3.4e-30, Sum P(6) = 3.4e-30
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 663 LCRHPLLQSDLFSS 676
LC PLL+S +FSS
Sbjct: 959 LCSCPLLKSLVFSS 972
Score = 39 (18.8 bits), Expect = 1.2e-13, Sum P(5) = 1.2e-13
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDV 390
W+ L E + G+L M G Q +
Sbjct: 530 WLANLYEQGINGILADEMGLGKTVQSI 556
Score = 37 (18.1 bits), Expect = 3.4e-30, Sum P(6) = 3.4e-30
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 830 EERILELQDRKKKLAREAFRRKGKDQ 855
+E +++RK+K + A ++K +D+
Sbjct: 1285 QEESNRVKERKRKREKYAEKKKKEDE 1310
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 229 (85.7 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 65/222 (29%), Positives = 105/222 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMD---IAGKTLKNFTSSKVSAXXXXXXX 707
KTL +T +C HP + + S E I+G L S K
Sbjct: 1005 KTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDLYR-ASGKFELLDRILPK 1063
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
K + ++F Q ++ +LE+ F LRLDG+ ++ RA ++++F G
Sbjct: 1064 L--KATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEG-SQ 1120
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL N
Sbjct: 1121 YFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN 1180
Query: 828 SIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
S+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1181 SVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1222
Score = 187 (70.9 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 70/254 (27%), Positives = 130/254 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W+ +L++ P ++K Y G R V +L+ +++++TTY +
Sbjct: 779 LIIVPLSTLSNWVYELDKWA-PSIVKI-AYKGTPSMRRSLVPQLRSGKFNVLITTYEYI- 835
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 836 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE 892
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 893 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 952
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKA----KGVVQDYINAGSLMRNYST 570
K K + P+ +E Y + ++S ++ LY ++GK G +D G T
Sbjct: 953 K-KEVESQLPEKVE-YVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGA----KT 1006
Query: 571 VLSILLRLRQICTN 584
+++ +++L++IC +
Sbjct: 1007 LMNTIMQLKKICNH 1020
Score = 63 (27.2 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ + LI
Sbjct: 747 GILADEMGLGKTIQTIGLI 765
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 170 (64.9 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 47/152 (30%), Positives = 72/152 (47%)
Query: 685 IAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRL 744
I+ LK SK+ + + K VVFSQ+ +L +L + +A G +R
Sbjct: 1175 ISNMELKESFGSKIDTISKHLLYLKHNELYPKVVVFSQWLDVLDVLHKSFEANGIVFIRF 1234
Query: 745 DGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQ 804
DG K + ++ F VL ++ +G+ LT A+ VF+ EP N +E Q
Sbjct: 1235 DG----KSKNTCLKRFKEER--SLQVLTLHARSQSSGLTLTNATHVFMCEPLLNSGIEMQ 1288
Query: 805 AMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
A+ RVHRIGQ + IV +++E IL L
Sbjct: 1289 AISRVHRIGQTRPTFVYYYIVEDTVEGHILNL 1320
Score = 143 (55.4 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 46/195 (23%), Positives = 96/195 (49%)
Query: 396 YDLVLT-TYS-TLAIEESWL--ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKR 451
++L+ T ++S TL E+ + +SP+ + WWR+ +DEA +++ + + ++ + +
Sbjct: 391 FELLYTESHSRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVN 450
Query: 452 RWVVTGTPIQNGSFDLFSLMAFLQFEPFSV--KSYWQSLIQRPLAQGNRKGLSRLQVLMS 509
W V+GTP+++ DLF L+ L++ P + K W +I++ K + L
Sbjct: 451 CWTVSGTPVRSEVDDLFGLLFLLRYSPMYLYKKQAWMQIIEK-------KRVREFCDLFG 503
Query: 510 TISLRRTKD--KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRN 567
++ R +K + + L P+ LS+ E Y +L +A + + + + +
Sbjct: 504 SLVCRHSKQDVEEELKLPPQHRICMTTRLSVVEETNYQDLLSEAAKSLHFFKDRNLDLCD 563
Query: 568 YSTVLSILLRLRQIC 582
++ L+RLRQ C
Sbjct: 564 EESMRRWLVRLRQAC 578
Score = 100 (40.3 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD-VEELKMY---DLVLTTYST 405
K TLI+ P ++ W+++++ H VP LK + Y G R + ++ K++ D+V+T+YS
Sbjct: 331 KATLIITPSTILDQWLSEIDLH-VPS-LKVFHYQGIRKSNGLKSAKIFLDCDIVVTSYSD 388
Query: 406 LAIEESWLES 415
L E + ES
Sbjct: 389 LRFELLYTES 398
Score = 83 (34.3 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 218 SEELPPFWEEKGGGF------VNVLTNYHTDKRPEP-------LRGGIFADDMGLGKTLT 264
S +LPP W F VN + Y T + + +RGGI AD+MG+GKTL
Sbjct: 240 SNDLPPLWYHCKSLFDDRMVYVNHVYGYMTFSKEKTYLLASGDIRGGILADEMGMGKTLE 299
Query: 265 LLSLI 269
+L L+
Sbjct: 300 VLGLV 304
Score = 73 (30.8 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 639 TCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674
T C H++C C+ L+H+ C P+C+ L +++ +
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSC-PMCKTKLNKNNAY 1139
Score = 59 (25.8 bits), Expect = 9.4e-28, Sum P(5) = 9.4e-28
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 197 IKSELFVHQKEGLGWLVRREN-----SEELPPFW 225
+ SEL Q L W+ RRE S +LPP W
Sbjct: 214 LSSELLPFQMRVLEWMKRREEEKFLTSNDLPPLW 247
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 211 (79.3 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 70/260 (26%), Positives = 126/260 (48%)
Query: 337 VGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEEL 393
+G L + G + L+ P S W+ + + VP L+ + GD R + +
Sbjct: 222 LGYLKHYRNIPGPHMVLV--PKSTLYNWMNEFKRW-VPS-LRVICFVGDKDARAAFIRDE 277
Query: 394 KM---YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
M +D+ +T+Y + I+E +S KK W +++DEAH IKN ++ S V +
Sbjct: 278 MMPGEWDVCVTSYE-MVIKE---KSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 333
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMST 510
R ++TGTP+QN +L++L+ FL + F+ + S G++K + RL ++
Sbjct: 334 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKP 393
Query: 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST 570
LRR K L PK K Y+ LS +R+ + L A + + N+ + +N+
Sbjct: 394 FLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWFVIL---AFFISE---NSNNSNKNHKL 447
Query: 571 -VLSILLRLRQI-CTNLALC 588
+L++++ LR+ C + C
Sbjct: 448 DILNVIMLLREAKCCGASFC 467
Score = 196 (74.1 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 753 RAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRI 812
+ + IE F P + + S +A G G+NL +A V L + WNP V+ QAMDR HRI
Sbjct: 558 KKEAIEAFNAPN-SSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 616
Query: 813 GQKEDVKIVRLIVRNSIEERILELQDRKKKL 843
GQK+ V++ RLI N++EERI+E + K +L
Sbjct: 617 GQKKPVRVFRLITDNTVEERIVERAEIKLRL 647
Score = 66 (28.3 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKTL ++L+ K PG
Sbjct: 204 GILADEMGLGKTLQTIALLGYLKHYRNIPG 233
Score = 39 (18.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAIEESWLESPVKKI 420
W+ L E+ V G+L M G Q + LK Y + + L + +S L + + +
Sbjct: 193 WLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVL-VPKSTLYNWMNEF 251
Query: 421 EWW 423
+ W
Sbjct: 252 KRW 254
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 218 (81.8 bits), Expect = 4.7e-30, Sum P(4) = 4.7e-30
Identities = 63/199 (31%), Positives = 100/199 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDVEELKMYDLVLTTYSTL 406
LI+CP SV S W ++E PG L MY GD+ QD+++ + ++LTTY
Sbjct: 101 LILCPLSVLSNWTEEMERFA-PG-LSCVMYAGDKEERARLQQDLKQESRFHVLLTTYEIC 158
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ S+L+S W +++DEAH +KN N+ +T+ + ++TGTPIQN +
Sbjct: 159 LKDSSFLKS----FPWSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQE 214
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPL-AQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQ 525
L+SL++F++ + F K +QR + S L L+ LRR K + L
Sbjct: 215 LYSLLSFVEPDLFP-KEQVGDFVQRYQDIEKESDSASELHKLLQPFLLRRVKAEVATELP 273
Query: 526 PKTIEKYYVELSLEERKLY 544
KT Y +S ++K Y
Sbjct: 274 KKTEVVLYHGMSALQKKYY 292
Score = 207 (77.9 bits), Expect = 4.7e-30, Sum P(4) = 4.7e-30
Identities = 48/127 (37%), Positives = 75/127 (59%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASLK 776
++FSQ +ML +L++ + G+ R+DGS+ ++R I+ FG P V L S +
Sbjct: 368 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQ----PVFVFLLSTR 423
Query: 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
A G G+NLTAA V ++ +NP + QA R HRIGQ + VK++RLI R+++EE +
Sbjct: 424 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 483
Query: 837 QDRKKKL 843
K +L
Sbjct: 484 AASKLQL 490
Score = 52 (23.4 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 532 YYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVL 572
Y E S E+R+ +++L K ++ G L+RN VL
Sbjct: 581 YSKEPSKEDRESFEQLVNLQKTFLEKTTQEGRLLRNKGNVL 621
Score = 50 (22.7 bits), Expect = 4.7e-30, Sum P(4) = 4.7e-30
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I D+MGLGKT ++L
Sbjct: 68 GCILGDEMGLGKTCQTIAL 86
Score = 48 (22.0 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 815 KEDVKIVRLIVRNSIEERIL---ELQDRKKKLAREAFRRK 851
K +V + L ++ +RIL EL+DR+KK A +RK
Sbjct: 617 KGNVLLPGLSEESTKRKRILSPEELEDRRKKRQEAAAKRK 656
Score = 47 (21.6 bits), Expect = 3.3e-15, Sum P(5) = 3.3e-15
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 815 KEDVKIVRLIVRNSIEERILELQD---RKKKLAREAFRRKGKDQRE 857
+E K R++ +E+R + Q+ ++K+L E R+K K + E
Sbjct: 627 EESTKRKRILSPEELEDRRKKRQEAAAKRKRLMEEKKRKKEKVEHE 672
Score = 37 (18.1 bits), Expect = 4.7e-30, Sum P(4) = 4.7e-30
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 204 HQKEGLGWLVR 214
+Q EG+ WL R
Sbjct: 51 YQLEGVNWLAR 61
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 236 (88.1 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 977 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1034
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1035 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1093
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1094 FIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1153
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1154 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1194
Score = 177 (67.4 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 751 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 807
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 808 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 864
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 865 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 924
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 925 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 980
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 981 NTIMQLRKICNH 992
Score = 64 (27.6 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 719 GILADEMGLGKTIQTIALI 737
Score = 43 (20.2 bits), Expect = 5.7e-10, Sum P(3) = 5.7e-10
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 821 VRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQRE 857
+R I ++EE E++ +K+K R + GK+ E
Sbjct: 1300 LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDSGKEDGE 1336
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 235 (87.8 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 1010 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1067
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1068 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1126
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1127 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1186
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1187 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1227
Score = 177 (67.4 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 840
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 841 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 957
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 958 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 1013
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1014 NTIMQLRKICNH 1025
Score = 64 (27.6 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 752 GILADEMGLGKTIQTIALI 770
Score = 43 (20.2 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 809 VHRIGQKEDVKIVRLIVRNSIEERILELQ-DRKKKLAREAFRRKGK 853
+HR +D + + + +S R+L + +KK++ R+A RR+ K
Sbjct: 1449 MHRHSTWKDPRSTKTPLSSSQCLRVLGRKLPKKKRVRRKAMRRRRK 1494
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 244 (91.0 bits), Expect = 5.7e-30, Sum P(3) = 5.7e-30
Identities = 68/224 (30%), Positives = 106/224 (47%)
Query: 649 CIL-KTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
C+L K L+ + CC ++S L+ + D T S K+
Sbjct: 603 CLLFKALK--EKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAA 660
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNP-GPG 766
R+ + + V+ S + + L +L E + G+ RLDG+ +R Q+++ F + P
Sbjct: 661 IRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPA 720
Query: 767 GPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826
+ L S KA G G+NL AS + L + WNPA + QAM RV R GQK V I RL+
Sbjct: 721 --FIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTT 778
Query: 827 NSIEERILELQDRKKKLAREAFR-RKGKDQREVSTDDLRILMSL 869
+IEE+I + Q K+ L+ K + S ++LR L +L
Sbjct: 779 GTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTL 822
Score = 155 (59.6 bits), Expect = 5.7e-30, Sum P(3) = 5.7e-30
Identities = 40/157 (25%), Positives = 80/157 (50%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTL 406
K LIV P S+ W + ++ +K + D+ VEE +Y +++ +Y L
Sbjct: 363 KRALIVTPGSLVKNWKKEFQKWLGSERIKVFTV--DQDHKVEEFISSPLYSVMIISYEML 420
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
L+ ++ IE+ +I DE H +KN++ + + +TNL+ +RR ++TGTPIQN +
Sbjct: 421 LRS---LDQ-IQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQE 476
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSR 503
++L+ F+ S ++ + + P+ + ++
Sbjct: 477 FYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATK 513
Score = 68 (29.0 bits), Expect = 5.7e-30, Sum P(3) = 5.7e-30
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL +SL+
Sbjct: 328 GAILADEMGLGKTLQCISLV 347
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 215 (80.7 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 62/199 (31%), Positives = 103/199 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDVEELKMYDLVLTTYSTL 406
LI+CP SV S W ++E PG L Y GD+ QD+++ + ++LTTY
Sbjct: 101 LILCPLSVLSNWKEEMERFA-PG-LSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEIC 158
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ S+L+S W +++DEAH +KN ++ +T++ + ++TGTPIQN +
Sbjct: 159 LKDASFLKS----FPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 214
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPL-AQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQ 525
L+SL++F++ + FS K + +QR + + S L L+ LRR K + L
Sbjct: 215 LYSLLSFVEPDLFS-KEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELP 273
Query: 526 PKTIEKYYVELSLEERKLY 544
KT Y +S ++K Y
Sbjct: 274 RKTEVVIYHGMSALQKKYY 292
Score = 203 (76.5 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 48/127 (37%), Positives = 73/127 (57%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASLK 776
++FSQ +ML +L++ L G+ R+DGS+ ++R I+ FG P L S +
Sbjct: 369 LLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQ----PIFTFLLSTR 424
Query: 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
A G G+NLTAA V + +NP + QA R HRIGQ + VK++RLI R+++EE +
Sbjct: 425 AGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 484
Query: 837 QDRKKKL 843
K +L
Sbjct: 485 AASKLQL 491
Score = 50 (22.7 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I D+MGLGKT ++L
Sbjct: 68 GCILGDEMGLGKTCQTIAL 86
Score = 50 (22.7 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 532 YYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
Y E S E+R+ +++L K +++ G L+RN +V
Sbjct: 582 YSKEPSKEDRESFEQLVNLQKTLLEKTSQEGRLLRNKGSV 621
Score = 50 (22.7 bits), Expect = 4.2e-15, Sum P(4) = 4.2e-15
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 815 KEDVKIVRLIVRNSIEERIL---ELQDRKKKLAREAFRRK 851
K V I L+ ++ +RIL EL+DR+K+ A +RK
Sbjct: 618 KGSVPIPGLVEGSTKRKRILSPEELEDRRKRRQEAAAKRK 657
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 242 (90.2 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 62/204 (30%), Positives = 103/204 (50%)
Query: 656 HTKPCCPLCRHPLLQSDLFSSPPESS-DMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPT 714
H K P+ P ++ LF P + +I+ ++ F + + K
Sbjct: 1258 HVKKGIPVEDFP--KTGLFPEPLNKNFSSNISMPSMDRFITESAKLRKLDELLVKLKSEG 1315
Query: 715 TKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFG-NPGPGGPTVLLA 773
+ +++ Q KM+ L+EE L + +RLDGS + R ++ ++ NP V L
Sbjct: 1316 HRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEI---FVFLL 1372
Query: 774 SLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERI 833
S +A G G+NLTAA V + WNP ++ QAMDR HR+GQ V + RL+VR +IEER+
Sbjct: 1373 STRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERM 1432
Query: 834 LELQDRKKKLAREAFRRKGKDQRE 857
+ +K+++ + +GK Q +
Sbjct: 1433 RDRAKQKEQVQQVVM--EGKTQEK 1454
Score = 169 (64.5 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 56/218 (25%), Positives = 105/218 (48%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ-----DVEELKM-----YDLV 399
L+V P S W+ ++ + +P K Y+G DR D + L+ + ++
Sbjct: 759 LVVTPASTLHNWVNEISKF-LP-QFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVM 816
Query: 400 LTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTP 459
+T+Y + + ++L+ K++W +ILDEA IK++ + + + + + + + R ++TGTP
Sbjct: 817 VTSYQMVVTDANYLQ----KMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTP 872
Query: 460 IQNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQGNRK----GLSRLQVLMSTIS 512
IQN +L++L+ F+ F+ + W S A+ N K L RL +++
Sbjct: 873 IQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFM 932
Query: 513 LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGK 550
LRR K L K +L+ + KLY L+ +
Sbjct: 933 LRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKSQ 970
Score = 64 (27.6 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ +S++A
Sbjct: 727 GILADEMGLGKTVQSISVLA 746
Score = 38 (18.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL 393
W+ L + + G+L M G Q + L
Sbjct: 716 WLANLYDQGINGILADEMGLGKTVQSISVL 745
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 235 (87.8 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 985 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1042
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1043 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1101
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1102 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1161
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1162 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1202
Score = 177 (67.4 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 759 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 815
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 816 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 872
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 873 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 932
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 933 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 988
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 989 NTIMQLRKICNH 1000
Score = 64 (27.6 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 727 GILADEMGLGKTIQTIALI 745
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 235 (87.8 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 987 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1044
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1045 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1103
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1104 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1163
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1164 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1204
Score = 177 (67.4 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 817
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 818 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 934
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 935 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 990
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 991 NTIMQLRKICNH 1002
Score = 64 (27.6 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 729 GILADEMGLGKTIQTIALI 747
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 235 (87.8 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 987 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1044
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1045 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1103
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1104 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1163
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1164 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1204
Score = 177 (67.4 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 817
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 818 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 934
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 935 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 990
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 991 NTIMQLRKICNH 1002
Score = 64 (27.6 bits), Expect = 6.3e-30, Sum P(3) = 6.3e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 729 GILADEMGLGKTIQTIALI 747
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 235 (87.8 bits), Expect = 6.6e-30, Sum P(3) = 6.6e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 987 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1044
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1045 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1103
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1104 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1163
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1164 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1204
Score = 177 (67.4 bits), Expect = 6.6e-30, Sum P(3) = 6.6e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 761 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 817
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 818 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 934
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 935 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 990
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 991 NTIMQLRKICNH 1002
Score = 64 (27.6 bits), Expect = 6.6e-30, Sum P(3) = 6.6e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 729 GILADEMGLGKTIQTIALI 747
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 235 (87.8 bits), Expect = 6.7e-30, Sum P(3) = 6.7e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 1008 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1065
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1066 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1124
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1125 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1184
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1185 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1225
Score = 177 (67.4 bits), Expect = 6.7e-30, Sum P(3) = 6.7e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 782 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 838
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 839 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 895
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 896 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 955
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 956 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 1011
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1012 NTIMQLRKICNH 1023
Score = 64 (27.6 bits), Expect = 6.7e-30, Sum P(3) = 6.7e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 750 GILADEMGLGKTIQTIALI 768
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 235 (87.8 bits), Expect = 6.9e-30, Sum P(3) = 6.9e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 1003 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1060
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1061 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1119
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1120 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1179
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1180 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1220
Score = 177 (67.4 bits), Expect = 6.9e-30, Sum P(3) = 6.9e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 777 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 833
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 834 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 890
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 891 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 950
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 951 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 1006
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1007 NTIMQLRKICNH 1018
Score = 64 (27.6 bits), Expect = 6.9e-30, Sum P(3) = 6.9e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 745 GILADEMGLGKTIQTIALI 763
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 235 (87.8 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
Identities = 62/221 (28%), Positives = 106/221 (47%)
Query: 652 KTLQHT-KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXXXRD 710
KTL +T +C HP + + S E + + + + S
Sbjct: 1010 KTLMNTIMQLRKICNHPYMFQHIEESFAEH--LGYSNGVINGAELYRASGKFELLDRILP 1067
Query: 711 KKPTT--KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
K T + ++F Q ++ ++E+ F LRLDG+ ++ RA ++++F PG
Sbjct: 1068 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPG-SQY 1126
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
+ L S +A G G+NL AA V + + WNP + QA DR HRIGQ+ +V+++RL NS
Sbjct: 1127 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1186
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+EE+IL K + ++ + DQ+ S + L ++
Sbjct: 1187 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI 1227
Score = 177 (67.4 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
Identities = 70/252 (27%), Positives = 130/252 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
LI+ P S S W + ++ P ++K Y G R V +L+ ++++LTTY +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWA-PSVVKI-SYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI- 840
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ + + KI W +I+DE H +KN + + ++ + T+ A RR ++TGTP+QN +
Sbjct: 841 IKDKHI---LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQ-GNRKGLS---------RLQVLMSTISLRRT 516
L++L+ FL F S ++ P A G R L+ RL ++ LRR
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 957
Query: 517 KDKGLIGLQPKTIEKYYV--ELSLEERKLYDELEGKAKGVV-QDYINAGSLMRNYS-TVL 572
K K + P+ +E Y + ++S ++ LY ++ AKG++ D + + T++
Sbjct: 958 K-KEVESQLPEKVE-YVIKCDMSALQKILYRHMQ--AKGILLTDGSEKDKKGKGGAKTLM 1013
Query: 573 SILLRLRQICTN 584
+ +++LR+IC +
Sbjct: 1014 NTIMQLRKICNH 1025
Score = 64 (27.6 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++LI
Sbjct: 752 GILADEMGLGKTIQTIALI 770
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 237 (88.5 bits), Expect = 7.2e-30, Sum P(4) = 7.2e-30
Identities = 68/210 (32%), Positives = 105/210 (50%)
Query: 663 LCRHPLLQSDLFSSPPES-SDMDIAGKTLKNFTSSKVSAXXXXXXXXRD--KKPTTKSVV 719
+C HP DLFS P++ S + G + F K S K + ++
Sbjct: 799 ICNHP----DLFSGGPKNTSALPEDGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQRVLL 854
Query: 720 FSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASG 779
FSQ R+ML +LE L+A + L++DG+ R +I ++ V L + + G
Sbjct: 855 FSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDT--SIFVFLLTTRVGG 912
Query: 780 AGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDR 839
GVNLT A+RV + +P WNP+ + QA +R RIGQK+ V + RL+ +IEE+I Q
Sbjct: 913 LGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIF 972
Query: 840 KKKLAREAFRRKGKDQREVSTDDLRILMSL 869
K+ L + K +R ++DL L +L
Sbjct: 973 KQFLTNRVLKDP-KQRRFFKSNDLYELFTL 1001
Score = 175 (66.7 bits), Expect = 7.2e-30, Sum P(4) = 7.2e-30
Identities = 66/274 (24%), Positives = 119/274 (43%)
Query: 346 FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL-----KMYDLVL 400
F G TLIVCP +V W+ + P + G E L + +++
Sbjct: 557 FEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRDIVHCHGVLI 616
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+YS + + ++ + + +W VILDE H I+N NA + R +++G+P+
Sbjct: 617 TSYSYIRL----MQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 672
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMS---TISLRRTK 517
QN +L+SL F + P+ G S +QV + LR T
Sbjct: 673 QNNLRELWSLFDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 732
Query: 518 DKGLIGLQPKTIEKYYVELSL---EERKLYDELEGKAKGVVQDYINAGSLMR---NYSTV 571
+ L+ ++ + LSL E+ L+ L + V Q++I++ ++ R + +
Sbjct: 733 NPYLLRRMKSDVK---MSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGENQI 789
Query: 572 LSILLRLRQICTNLALCPSDVR--SIIPSNTIED 603
S L+ LR+IC + L + S +P + +E+
Sbjct: 790 FSGLVALRKICNHPDLFSGGPKNTSALPEDGLEE 823
Score = 67 (28.6 bits), Expect = 7.2e-30, Sum P(4) = 7.2e-30
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLIA 270
GGI D+MGLGKT+ +++ +A
Sbjct: 521 GGILGDEMGLGKTIQIIAFLA 541
Score = 41 (19.5 bits), Expect = 7.2e-30, Sum P(4) = 7.2e-30
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 137 EGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIF 174
E G+ ++S +D+S+ L ++ + + V+ +D+ F
Sbjct: 387 EEGVAVLSSDDISYELKPLRKGQKYEKKVPVQEIDDDF 424
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 651 LKTLQ-HTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTL 690
++TL+ H K P P+LQ D P SD + G T+
Sbjct: 1023 IQTLKCHFKKRTP----PVLQMDPKRKKPLVSDTSVNGATV 1059
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 243 (90.6 bits), Expect = 7.3e-30, Sum P(3) = 7.3e-30
Identities = 69/226 (30%), Positives = 107/226 (47%)
Query: 649 CIL-KTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSAXXXXXXX 707
C+L K L+ + CC ++S L+ + D T S K+
Sbjct: 603 CLLFKALK--EKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAA 660
Query: 708 XRDKKPTTKSVVF--SQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNP-G 764
R+ + + VV S + + L +L+E + G+ RLDG+ +R Q+++ F +
Sbjct: 661 IRELSSSERQVVVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFS 720
Query: 765 PGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLI 824
P + L S KA G G+NL AS + L + WNPA + QAM RV R GQK V I RL+
Sbjct: 721 PA--FIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLL 778
Query: 825 VRNSIEERILELQDRKKKLAREAFR-RKGKDQREVSTDDLRILMSL 869
+IEE+I + Q K+ L+ K + S ++LR L +L
Sbjct: 779 TTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTL 824
Score = 155 (59.6 bits), Expect = 7.3e-30, Sum P(3) = 7.3e-30
Identities = 40/157 (25%), Positives = 80/157 (50%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTL 406
K LIV P S+ W + ++ +K + D+ VEE +Y +++ +Y L
Sbjct: 363 KRALIVTPGSLVKNWKKEFQKWLGSERIKVFTV--DQDHKVEEFISSPLYSVMIISYEML 420
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
L+ ++ IE+ +I DE H +KN++ + + +TNL+ +RR ++TGTPIQN +
Sbjct: 421 LRS---LDQ-IQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQE 476
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSR 503
++L+ F+ S ++ + + P+ + ++
Sbjct: 477 FYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATK 513
Score = 68 (29.0 bits), Expect = 7.3e-30, Sum P(3) = 7.3e-30
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL +SL+
Sbjct: 328 GAILADEMGLGKTLQCISLV 347
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 223 (83.6 bits), Expect = 7.8e-30, Sum P(3) = 7.8e-30
Identities = 56/156 (35%), Positives = 88/156 (56%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 870 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 927
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 928 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 987
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
E +L++ +K KL ++ D+ + D +L
Sbjct: 988 ESMLKINQQKLKLEQDMTTIDEGDEGSMPADIATLL 1023
Score = 184 (69.8 bits), Expect = 7.8e-30, Sum P(3) = 7.8e-30
Identities = 70/291 (24%), Positives = 143/291 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVE-ELKMYDLVLTTYST 405
LIV P S W+ ++ P LK YYG +R Q ++ + + Y++++TTY+
Sbjct: 552 LIVVPASTIDNWLREVNLWC-P-TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 609
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S ++++ I DE H++KN + + + + +NA R ++TGTP+QN
Sbjct: 610 -AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 668
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K+
Sbjct: 669 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 728
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ L L PK + +S ++ +LY L + K + + M + + +++++L
Sbjct: 729 EVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-------MEKNTEMCNVMMQL 781
Query: 579 RQICTNLAL----CPSDVRSIIPSNTIEDVSN---NPDLLKKLVEVLQDGE 622
R++ + L ++ + +++ ++ NPDL+ + +EV+ D E
Sbjct: 782 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 832
Score = 62 (26.9 bits), Expect = 7.8e-30, Sum P(3) = 7.8e-30
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 521 GILADEMGLGKTIQAIAFLA 540
Score = 49 (22.3 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 262 TLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEE 296
T+ ++S + D+ + P + G N+ DL+E+ED++
Sbjct: 120 TVIIVSEPSEDEESQGLPTVAGRNNNDLSELEDQQ 154
Score = 41 (19.5 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 18/99 (18%), Positives = 40/99 (40%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 473 TKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 531
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWW 423
Q + L +Y + + S +++ ++++ W
Sbjct: 532 TIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLW 570
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 224 (83.9 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 55/158 (34%), Positives = 86/158 (54%)
Query: 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVL 771
K + ++FSQ R+ML +LE L+A + L++DG+ R +I + V
Sbjct: 853 KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDT--SIFVF 910
Query: 772 LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831
L + + G GVNLT A+RV + +P WNP+ + QA +R RIGQK+ V + RL+ +IEE
Sbjct: 911 LLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEE 970
Query: 832 RILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+I Q K+ L + K +R ++DL L +L
Sbjct: 971 KIYHRQIFKQFLTNRVLKDP-KQRRFFKSNDLYELFTL 1007
Score = 184 (69.8 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 64/274 (23%), Positives = 122/274 (44%)
Query: 346 FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL-----KMYDLVL 400
F G T+IVCP +V W+ + P + G T E+L + +++
Sbjct: 563 FEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHCHGILI 622
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+YS + + ++ + + +W VILDE H I+N NA + R +++G+P+
Sbjct: 623 TSYSYIRL----MQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 678
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMS---TISLRRTK 517
QN +L+SL F+ + P+ G S +QV + LR T
Sbjct: 679 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 738
Query: 518 DKGLIGLQPKTIEKYYVELSL---EERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
+ L+ ++ + LSL E+ L+ L + V Q+++++ + R + + I
Sbjct: 739 NPYLLRRMKSDVK---MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQI 795
Query: 575 ---LLRLRQICTNLALCPSDVRSI--IPSNTIED 603
L+ LR+IC + L +++ +P + +E+
Sbjct: 796 FSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 829
Score = 67 (28.6 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLIA 270
GGI D+MGLGKT+ +++ +A
Sbjct: 527 GGILGDEMGLGKTIQIIAFLA 547
Score = 48 (22.0 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 543 LYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIE 602
+YD+ + +GV+Q NA S ++ + R + +L C + +R I + IE
Sbjct: 99 VYDQ-DVLEQGVLQQVDNAIHEASRASQLVDVEKEYRSVLDDLTSCTTSLRQI--NKIIE 155
Query: 603 DVS----NNPDLLKKLVEV 617
+S + D+ +KL V
Sbjct: 156 QLSPQAATSRDINRKLDSV 174
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 276 (102.2 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M KKR++V++ F +P +L+S
Sbjct: 512 KVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSS- 570
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ SIEE+IL+
Sbjct: 571 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 630
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
Q KK L+ ++ + DDL+ L
Sbjct: 631 RQTHKKSLSSSIIDNNDSAEKHFTRDDLKDL 661
Score = 126 (49.4 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 67/277 (24%), Positives = 123/277 (44%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEELKMYDLVLTTYSTLAIE 409
++V P S+ W + + M M G D T+ +E+ M L I
Sbjct: 210 IVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNTATRCGTPVLLIS 269
Query: 410 -ESW-LESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E++ L S + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 270 YETFRLYSHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 329
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
FSL+ F+ E S ++ + + +G + + +L +T++ L+GL
Sbjct: 330 YFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADSTDAE---RERALEKTQE--LVGLVN 384
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLA 586
+ I + ++ L L K + VV + A L Y+ L+ Q+ +LA
Sbjct: 385 QCIIRRTNQI------LTKYLPVKFEMVVCAKLTAVQLQL-YTN----FLKSDQVRRSLA 433
Query: 587 LCP--SDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDG 621
C + + ++ T++ + N+PDL+ + + + G
Sbjct: 434 DCTDKTTLTALADITTLKKLCNHPDLIYEKIAAREKG 470
Score = 58 (25.5 bits), Expect = 7.9e-30, Sum P(3) = 7.9e-30
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I AD+MGLGKTL ++L
Sbjct: 173 GCIMADEMGLGKTLQCVTL 191
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 222 (83.2 bits), Expect = 8.0e-30, Sum P(3) = 8.0e-30
Identities = 49/129 (37%), Positives = 77/129 (59%)
Query: 715 TKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
+K ++FSQ ++L +LE+ L G+ RLDGS +R +I+ F + P LL S
Sbjct: 1002 SKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETI-PVFLL-S 1059
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
+ G G+NLT A+ V + +NP V+ QA DR HR+GQ+ +V I +L+ N+++ I
Sbjct: 1060 TNSGGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDINIH 1119
Query: 835 ELQDRKKKL 843
E ++KKKL
Sbjct: 1120 ESANQKKKL 1128
Score = 181 (68.8 bits), Expect = 8.0e-30, Sum P(3) = 8.0e-30
Identities = 64/206 (31%), Positives = 107/206 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKM------YDLVLTTY 403
L+V P ++ + W + E T L YYG+ + E ELK ++++LTTY
Sbjct: 595 LVVVPATILANW--EREFQTWCPSLSIVRYYGNLREREELRYELKKKRPGKDFNVILTTY 652
Query: 404 STLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNG 463
+ L +K+ ++ +ILDEA IKN+++++ + + + A R ++TGTP+QN
Sbjct: 653 NLLFANND--RGFLKRFDYSFLILDEAQNIKNSDSKRYKNIFKIGAHHRLLLTGTPLQNN 710
Query: 464 SFDLFSLMAFLQFEPF-SVKSYWQSLIQRPLAQGNR--KGLSRLQVLMSTISLRRTKDKG 520
++L+SL+ FL F SVK L Q G+ ++R++ ++S LRR K
Sbjct: 711 LYELWSLLNFLMPHIFGSVKKDNYLLNQLLEYNGDDCDSAITRMKKILSPFILRRLKSTV 770
Query: 521 LIGLQPKTIEKYYVELSLEERKLYDE 546
L+PK IE +VE+ + K DE
Sbjct: 771 SKELKPK-IE--HVEIC-KLPKFQDE 792
Score = 68 (29.0 bits), Expect = 8.0e-30, Sum P(3) = 8.0e-30
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ +SL+A
Sbjct: 563 GILADEMGLGKTVQTISLLA 582
Score = 42 (19.8 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 816 EDVKIVRLI-VRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDL 863
E V+I +L ++ + I+E + KL E +K K+++E L
Sbjct: 779 EHVEICKLPKFQDETYKNIIERSKSQWKLRNELLLKKEKEEKEKEKQSL 827
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 224 (83.9 bits), Expect = 9.6e-30, Sum P(3) = 9.6e-30
Identities = 56/156 (35%), Positives = 88/156 (56%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 865 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 922
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 923 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 982
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
E +L++ +K KL ++ D+ + D +L
Sbjct: 983 ESMLKINQQKLKLEQDMTTVDEADEGSMPADIATLL 1018
Score = 182 (69.1 bits), Expect = 9.6e-30, Sum P(3) = 9.6e-30
Identities = 72/291 (24%), Positives = 146/291 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVE-ELKMYDLVLTTYST 405
LIV P S W+ ++ P L YYG +R Q ++ + + Y++++TTY+
Sbjct: 547 LIVVPASTIDNWLREVNLWC-P-TLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNC 604
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S ++++ I DE H++KN + + + + +NA+ R ++TGTP+QN
Sbjct: 605 -AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLL 663
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K+
Sbjct: 664 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKE 723
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ L L PK + +S ++ +LY L + K IN +L +N + + +++++L
Sbjct: 724 EVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLK----KSIN--NLEKN-TEMCNVMMQL 776
Query: 579 RQICTNLAL----CPSDVRSIIPSNTIEDVSN---NPDLLKKLVEVLQDGE 622
R++ + L ++ + +++ ++ NPDL+ + +EV+ D E
Sbjct: 777 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 827
Score = 62 (26.9 bits), Expect = 9.6e-30, Sum P(3) = 9.6e-30
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 516 GILADEMGLGKTIQAIAFLA 535
Score = 39 (18.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 22/129 (17%), Positives = 51/129 (39%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 468 TKQVTMLTGNGGGWNIEQPSLLNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 526
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV 444
Q + L ++ + + S +++ ++++ W L+ V+ +Q+ R
Sbjct: 527 TIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPTLN---VLCYYGSQEERKQ 583
Query: 445 TNLNAKRRW 453
N ++
Sbjct: 584 IRFNIHNKY 592
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 237 (88.5 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 59/176 (33%), Positives = 89/176 (50%)
Query: 695 SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754
S K+ R+ +P K V+ S + + L +L+E + G+ RLDG +R
Sbjct: 641 SGKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQTPISQRQ 700
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ 814
Q+++ F N + L S KA G G+NL S + L + WNPA + QAM RV R GQ
Sbjct: 701 QIVDGF-NSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQ 759
Query: 815 KEDVKIVRLIVRNSIEERILELQDRKKKLAREAFR-RKGKDQREVSTDDLRILMSL 869
K V I RL+ +IEE+I + Q K+ L+ K D + S ++L+ L +L
Sbjct: 760 KHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLSKTSDHIQFSVEELKNLFTL 815
Score = 152 (58.6 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 72/283 (25%), Positives = 129/283 (45%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIE 409
K TLIV P S+ + W + ++ G+ + ++ D+ VEE YS L I
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWL--GIERIKIFTVDQDHKVEEFTKSPF----YSVLIIS 409
Query: 410 -ESWLES--PVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E L S +K +++ +I DE H +KN+ + + + +L+ ++R ++TGTP+QN +
Sbjct: 410 YEMLLRSLDQIKNVKFDLLICDEGHRLKNSTIKTTTALISLSCEKRIILTGTPVQNDLQE 469
Query: 467 LFSLMAFLQ---FEPFSV--KSYWQSLI--QRPLAQGNRKGL-----SRLQVLMSTISLR 514
F+L+ F+ S K Y + +I ++P A + L + L L LR
Sbjct: 470 FFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEERELGEQRAAELTCLTGLFILR 529
Query: 515 RTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
RT++ L PK + + LY +L V+ + L+ N S ++ I
Sbjct: 530 RTQEVINQYLPPKIENVVFCRPGALQIALYRKLLNSQ--AVRFCLQG--LLENTSHLICI 585
Query: 575 LLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEV 617
L+++C + L ++ SN+ D S +L + L+ V
Sbjct: 586 GA-LKKLCNHPCLLFGSIKEK-ESNSTWDESEERNLYEGLMNV 626
Score = 76 (31.8 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAG 276
G I AD+MGLGKTL +SLI +C G
Sbjct: 321 GAILADEMGLGKTLQCISLIWTLQCQG 347
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 210 (79.0 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 62/199 (31%), Positives = 102/199 (51%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDVEELKMYDLVLTTYSTL 406
LI+CP SV S W +++ PG L Y GD+ QD+++ + ++LTTY
Sbjct: 99 LILCPLSVLSNWKEEMQRFA-PG-LSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEIC 156
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
+ S+L+S W +++DEAH +KN ++ +T++ + ++TGTPIQN +
Sbjct: 157 LKDASFLKS----FPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 212
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPL-AQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQ 525
L+SL++F++ + FS K IQR + + S L L+ LRR K + L
Sbjct: 213 LYSLLSFVEPDLFS-KEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELP 271
Query: 526 PKTIEKYYVELSLEERKLY 544
KT Y +S ++K Y
Sbjct: 272 KKTEVVIYHGMSALQKKYY 290
Score = 206 (77.6 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 48/127 (37%), Positives = 75/127 (59%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT-VLLASLK 776
++FSQ +ML +L++ + G+ R+DGS+ ++R I+ FG P V L S +
Sbjct: 367 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQ----PIFVFLLSTR 422
Query: 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
A G G+NLTAA V ++ +NP + QA R HRIGQ + VK++RLI R+++EE +
Sbjct: 423 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 482
Query: 837 QDRKKKL 843
K +L
Sbjct: 483 AASKLQL 489
Score = 52 (23.4 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 532 YYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVL 572
Y E S E+RK +++L K +++ G +RN +VL
Sbjct: 580 YSKEPSKEDRKSFEQLVNLQKTLLEKASQEGRSLRNKGSVL 620
Score = 52 (23.4 bits), Expect = 7.3e-14, Sum P(3) = 7.3e-14
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 803 EQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL---ELQDRKKKLAREAFRRK 851
E+A + K V I L+ ++ +R+L EL+DR+KK A +R+
Sbjct: 604 EKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRR 655
Score = 50 (22.7 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I D+MGLGKT ++L
Sbjct: 66 GCILGDEMGLGKTCQTIAL 84
Score = 39 (18.8 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 204 HQKEGLGWLVRRENSEELPPFWEEKGGG 231
+Q EG+ WL +R + + +E G G
Sbjct: 49 YQLEGVNWLAQRFHCQNGCILGDEMGLG 76
Score = 38 (18.4 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 473 FLQFEPFSVKSYWQSLIQR 491
FL P SV S W+ +QR
Sbjct: 98 FLILCPLSVLSNWKEEMQR 116
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 219 (82.2 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 52/136 (38%), Positives = 81/136 (59%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF +L +LE L+ + +RLDG R +I+EF V
Sbjct: 804 KEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLIDEFNTDMD--IFV 861
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ +VK+++LI + +IE
Sbjct: 862 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREVKVIKLISKGTIE 921
Query: 831 ERILELQDRKKKLARE 846
E +L++ +K KL ++
Sbjct: 922 ESMLKMNQQKLKLEQD 937
Score = 191 (72.3 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 60/214 (28%), Positives = 106/214 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVEELKM-YDLVLTTYST 405
LIV P S WI ++ P + + Y G DR D+ + +++++TTY+
Sbjct: 485 LIVVPASTLDNWIREVNLWC-PELNVLFYYVGSQEDRKHLRADISNRVVDFNVIVTTYNC 543
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S +K++ I DE H++KN ++ + + + +NAK R ++TGTP+QN
Sbjct: 544 -AISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLL 602
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQGN--RKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR KD
Sbjct: 603 ELMSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILRRVKD 662
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAK 552
+ L L PK +S ++ +LY +L K K
Sbjct: 663 EVLKQLPPKKDHIELCAMSEKQEQLYCDLLNKLK 696
Score = 62 (26.9 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 454 GILADEMGLGKTIQAIAFLA 473
Score = 44 (20.5 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEW 422
W+ L +H + G+L M G Q + L +Y + + S L++ ++++
Sbjct: 443 WLALLHKHGLNGILADEMGLGKTIQAIAFLAHIYQEGDRGPHLIVVPASTLDNWIREVNL 502
Query: 423 W 423
W
Sbjct: 503 W 503
Score = 38 (18.4 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 200 ELFVHQKEGLGWL 212
EL +QK GL WL
Sbjct: 432 ELKPYQKIGLNWL 444
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 223 (83.6 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 56/156 (35%), Positives = 88/156 (56%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 867 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 924
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 925 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 984
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
E +L++ +K KL ++ D+ + D +L
Sbjct: 985 ESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLL 1020
Score = 181 (68.8 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 71/292 (24%), Positives = 145/292 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKM--------YDLVLTTYS 404
LIV P S W+ ++ P LK YYG + ++ ++++ Y++++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWC-P-TLKVLCYYGSQ-EERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 405 TLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
AI S S ++++ I DE H++KN + + + + +NA R ++TGTP+QN
Sbjct: 606 C-AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
Query: 465 FDLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTK 517
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K
Sbjct: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVK 724
Query: 518 DKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLR 577
++ L L PK +S ++ +LY L + K IN +L +N + + +++++
Sbjct: 725 EEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLK----KSIN--NLEKN-TEMCNVMMQ 777
Query: 578 LRQICTNLAL----CPSDVRSIIPSNTIEDVSN---NPDLLKKLVEVLQDGE 622
LR++ + L ++ + +++ ++ NPDL+ + +EV+ D E
Sbjct: 778 LRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 829
Score = 62 (26.9 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 518 GILADEMGLGKTIQAIAFLA 537
Score = 45 (20.9 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 49 REMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGIVPNTRS 108
++ V +V EP +S + + R D + +E + L L D+ + ++ + P RS
Sbjct: 117 KDTVIIVSEPSEDEESQGLPTMARRNDDISELED--LSELEDLKDAKLQTLKELFPQ-RS 173
Query: 109 KGNRFKI 115
+ K+
Sbjct: 174 DNDLLKL 180
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 24/129 (18%), Positives = 50/129 (38%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 470 TKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 528
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV 444
Q + L +Y + + S +++ ++++ W L V+ +Q+ R
Sbjct: 529 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLK---VLCYYGSQEERKQ 585
Query: 445 TNLNAKRRW 453
N R+
Sbjct: 586 IRFNIHSRY 594
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 224 (83.9 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 53/152 (34%), Positives = 86/152 (56%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F+Q R+ML +LE ++ GF L++DG+ R +I +F N V + + +
Sbjct: 837 LLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQF-NQNKD-IFVFILTTRV 894
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G GVNLT A+RV + +P WNP+ + QA +R RIGQK+ V + RL+ +IEE+I Q
Sbjct: 895 GGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQ 954
Query: 838 DRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
K+ L + K +R ++D+ L +L
Sbjct: 955 IFKQFLTNRVLKDP-KQRRFFKSNDIYELFTL 985
Score = 181 (68.8 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 68/259 (26%), Positives = 116/259 (44%)
Query: 346 FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL-----KMYDLVL 400
+ G T+IVCP +V W+ + P + G T E+L + +++
Sbjct: 540 YAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHGILI 599
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+YS + I + +++ + +W VILDE H I+N NA + R++++G+P+
Sbjct: 600 TSYSYIRIMQDYIQ----RYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPM 655
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQV---------LMSTI 511
QN +L+SL F+ + P+ G S +QV L TI
Sbjct: 656 QNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTI 715
Query: 512 S---LRRTK-D-KGLIGLQPKTIEKYYVELSLEERKLYDE-LEGKAKGVVQDYINAGSLM 565
+ LRR K D K + L K + + L+ ++R++Y L+ K V +N G +
Sbjct: 716 NPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKE---VYQILN-GDMQ 771
Query: 566 RNYSTVLSILLRLRQICTN 584
V S L+ LR+IC +
Sbjct: 772 -----VFSGLIALRKICNH 785
Score = 67 (28.6 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLIA 270
GGI D+MGLGKT+ +++ +A
Sbjct: 504 GGILGDEMGLGKTIQIIAFLA 524
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 276 (102.2 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 60/153 (39%), Positives = 92/153 (60%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M+ KKR++V++ F +P +L+S
Sbjct: 518 KVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSS- 576
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ SIEE+IL+
Sbjct: 577 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 636
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L +
Sbjct: 637 RQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFT 669
Score = 121 (47.7 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 41/188 (21%), Positives = 83/188 (44%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYST----LAI 408
++V P S+ W + + +L M G + + L+ + + + T ++
Sbjct: 217 IVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISY 276
Query: 409 EESWLESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
E + + + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 277 ETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEY 336
Query: 468 FSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLS---RLQVLMSTISLRRTKDKGLIGL 524
+SL+ F+ E + ++ + + +G + R + + T L D+ +I
Sbjct: 337 YSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRR 396
Query: 525 QPKTIEKY 532
+ + KY
Sbjct: 397 TNQILTKY 404
Score = 61 (26.5 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL ++L+
Sbjct: 180 GCIMADEMGLGKTLQCVTLV 199
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 222 (83.2 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 53/136 (38%), Positives = 82/136 (60%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 867 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 924
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 925 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 984
Query: 831 ERILELQDRKKKLARE 846
E +L++ +K KL ++
Sbjct: 985 ESMLKINQQKLKLEQD 1000
Score = 183 (69.5 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 75/288 (26%), Positives = 136/288 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVE-ELKMYDLVLTTYST 405
LIV P S W+ ++ P LK YYG +R Q ++ + + Y++++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWC-P-TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 606
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S ++++ I DE H++KN + + + + +NA R ++TGTP+QN
Sbjct: 607 -AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K+
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL--- 575
+ L L PK + +S ++ +LY L + K + + I + M N L +
Sbjct: 726 EVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-IEKSTEMCNVMMQLRKMANH 784
Query: 576 -LRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGE 622
L RQ T L ++ ++ NPDL+ + +EV+ D E
Sbjct: 785 PLLHRQYYTAEKL--KEMSQLMLKEPTH-CEANPDLIFEDMEVMTDFE 829
Score = 62 (26.9 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 518 GILADEMGLGKTIQAIAFLA 537
Score = 44 (20.5 bits), Expect = 9.2e-28, Sum P(3) = 9.2e-28
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 262 TLTLLSLIALDKCAGVAPGLTGTNSLDLNEVED 294
T+ ++S + D+ + P ++G N+ D++E+ED
Sbjct: 117 TVIIVSEPSEDEESQGLPTMSGRNNDDISELED 149
Score = 41 (19.5 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 18/99 (18%), Positives = 40/99 (40%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 470 TKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 528
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWW 423
Q + L +Y + + S +++ ++++ W
Sbjct: 529 TIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLW 567
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 222 (83.2 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 53/136 (38%), Positives = 82/136 (60%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 867 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 924
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 925 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 984
Query: 831 ERILELQDRKKKLARE 846
E +L++ +K KL ++
Sbjct: 985 ESMLKINQQKLKLEQD 1000
Score = 183 (69.5 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 75/288 (26%), Positives = 136/288 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVE-ELKMYDLVLTTYST 405
LIV P S W+ ++ P LK YYG +R Q ++ + + Y++++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWC-P-TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 606
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S ++++ I DE H++KN + + + + +NA R ++TGTP+QN
Sbjct: 607 -AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K+
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL--- 575
+ L L PK + +S ++ +LY L + K + + I + M N L +
Sbjct: 726 EVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-IEKSTEMCNVMMQLRKMANH 784
Query: 576 -LRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGE 622
L RQ T L ++ ++ NPDL+ + +EV+ D E
Sbjct: 785 PLLHRQYYTAEKL--KEMSQLMLKEPTH-CEANPDLIFEDMEVMTDFE 829
Score = 62 (26.9 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 518 GILADEMGLGKTIQAIAFLA 537
Score = 44 (20.5 bits), Expect = 9.2e-28, Sum P(3) = 9.2e-28
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 262 TLTLLSLIALDKCAGVAPGLTGTNSLDLNEVED 294
T+ ++S + D+ + P ++G N+ D++E+ED
Sbjct: 115 TVIIVSEPSEDEESQGLPTMSGRNNDDISELED 147
Score = 41 (19.5 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 18/99 (18%), Positives = 40/99 (40%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 470 TKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 528
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWW 423
Q + L +Y + + S +++ ++++ W
Sbjct: 529 TIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLW 567
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 222 (83.2 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 53/136 (38%), Positives = 82/136 (60%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 867 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 924
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 925 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 984
Query: 831 ERILELQDRKKKLARE 846
E +L++ +K KL ++
Sbjct: 985 ESMLKINQQKLKLEQD 1000
Score = 183 (69.5 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 75/288 (26%), Positives = 136/288 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVE-ELKMYDLVLTTYST 405
LIV P S W+ ++ P LK YYG +R Q ++ + + Y++++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWC-P-TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 606
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S ++++ I DE H++KN + + + + +NA R ++TGTP+QN
Sbjct: 607 -AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K+
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL--- 575
+ L L PK + +S ++ +LY L + K + + I + M N L +
Sbjct: 726 EVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-IEKSTEMCNVMMQLRKMANH 784
Query: 576 -LRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGE 622
L RQ T L ++ ++ NPDL+ + +EV+ D E
Sbjct: 785 PLLHRQYYTAEKL--KEMSQLMLKEPTH-CEANPDLIFEDMEVMTDFE 829
Score = 62 (26.9 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 518 GILADEMGLGKTIQAIAFLA 537
Score = 44 (20.5 bits), Expect = 9.2e-28, Sum P(3) = 9.2e-28
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 262 TLTLLSLIALDKCAGVAPGLTGTNSLDLNEVED 294
T+ ++S + D+ + P ++G N+ D++E+ED
Sbjct: 117 TVIIVSEPSEDEESQGLPTMSGRNNDDISELED 149
Score = 41 (19.5 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 18/99 (18%), Positives = 40/99 (40%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 470 TKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 528
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWW 423
Q + L +Y + + S +++ ++++ W
Sbjct: 529 TIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLW 567
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 222 (83.2 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 56/156 (35%), Positives = 88/156 (56%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
K+ + V+FSQF ML +LE L+ + LRLDG +R +I+EF V
Sbjct: 869 KQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMD--IFV 926
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S KA G G+NLT+A+ V L + NP ++QA DR HR+GQ ++V +++LI + +IE
Sbjct: 927 FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIE 986
Query: 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
E +L++ +K KL ++ D+ + D +L
Sbjct: 987 ESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLL 1022
Score = 183 (69.5 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 70/291 (24%), Positives = 141/291 (48%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQ---DVEE-LKMYDLVLTTYST 405
LIV P S W+ ++ P LK YYG +R Q ++ + Y++++TTY+
Sbjct: 551 LIVVPASTIDNWLREVNLWC-P-TLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNC 608
Query: 406 LAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSF 465
AI S S ++++ I DE H++KN + + + + +NA R ++TGTP+QN
Sbjct: 609 -AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 667
Query: 466 DLFSLMAFLQFEPFS-----VKSYWQSLIQRPLAQG--NRKGLSRLQVLMSTISLRRTKD 518
+L SL+ F+ FS ++ + S + Q ++ ++ + ++ LRR K+
Sbjct: 668 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKE 727
Query: 519 KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRL 578
+ L L PK +S ++ +LY L + K + + M + + +++++L
Sbjct: 728 EVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINN-------MEKNTEMCNVMMQL 780
Query: 579 RQICTNLAL----CPSDVRSIIPSNTIEDVSN---NPDLLKKLVEVLQDGE 622
R++ + L ++ + +++ ++ NPDL+ + +EV+ D E
Sbjct: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 831
Score = 62 (26.9 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++ +A
Sbjct: 520 GILADEMGLGKTIQAIAFLA 539
Score = 45 (20.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 24/129 (18%), Positives = 50/129 (38%)
Query: 326 TKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD 385
TK + G G + S + + ++L V W+ + +H + G+L M G
Sbjct: 472 TKQVTMLTGNGGGWNTEQPSILNQSLSLKPYQ-KVGLNWLALVHKHGLNGILADEMGLGK 530
Query: 386 RTQDVEELK-MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV 444
Q + L +Y + + S +++ ++++ W L V+ +Q+ R
Sbjct: 531 TIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLK---VLCYYGSQEERKQ 587
Query: 445 TNLNAKRRW 453
N R+
Sbjct: 588 IRYNIHSRY 596
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 250 (93.1 bits), Expect = 1.4e-29, Sum P(5) = 1.4e-29
Identities = 64/175 (36%), Positives = 94/175 (53%)
Query: 673 LFSSPPES--SDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILL 730
L+S P++ S + I GK S K+ A R K + +++SQ +M+ LL
Sbjct: 1076 LWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT--RLKSQGHRVLIYSQMTRMIDLL 1133
Query: 731 EEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRV 790
EE + +RLDGS +R ++ +F N V L S +A G G+NLTAA V
Sbjct: 1134 EEYMVYRKHTYMRLDGSSKISERRDMVADFQNRND--IFVFLLSTRAGGLGINLTAADTV 1191
Query: 791 FLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAR 845
+ WNP V++QAMDR HR+GQ + V + RLI + +IEERIL+ K ++ R
Sbjct: 1192 IFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQR 1246
Score = 168 (64.2 bits), Expect = 1.4e-29, Sum P(5) = 1.4e-29
Identities = 58/254 (22%), Positives = 121/254 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD--------RTQDVEELKMYD----LVL 400
LI+ P S + W + VP K Y+G+ R + L D +V+
Sbjct: 571 LIISPASTLNNWHQEFTRF-VP-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 628
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+Y + + + + +++W ++LDEA +K++++ + + + + R ++TGTPI
Sbjct: 629 TSYQLVVQDVKYFQ----RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 684
Query: 461 QNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQG----NRKGLSRLQVLMSTISL 513
QN +L++L+ F+ F+ + W S A+ + LSRL +++ L
Sbjct: 685 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFML 744
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKA--KGVVQDYINAGSLMRNY-ST 570
RR K L K Y +L+ ++ LY L+ K + ++Q + + +N S+
Sbjct: 745 RRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSS 804
Query: 571 VLSILLRLRQICTN 584
+++++++ R++C +
Sbjct: 805 LMNLVMQFRKVCNH 818
Score = 64 (27.6 bits), Expect = 1.4e-29, Sum P(5) = 1.4e-29
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++L+A
Sbjct: 539 GILADEMGLGKTVQSIALLA 558
Score = 40 (19.1 bits), Expect = 1.4e-29, Sum P(5) = 1.4e-29
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 663 LCRHPLLQSDLFSS 676
LC PLL+S +FSS
Sbjct: 962 LCSCPLLKSLVFSS 975
Score = 39 (18.8 bits), Expect = 2.6e-14, Sum P(4) = 2.6e-14
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDV 390
W+ L E + G+L M G Q +
Sbjct: 528 WLANLYEQGINGILADEMGLGKTVQSI 554
Score = 38 (18.4 bits), Expect = 1.4e-29, Sum P(5) = 1.4e-29
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 830 EERILELQDRKKKLAREAFRRKGKDQ 855
+E +++RK+K + A ++K +D+
Sbjct: 1288 QEETNRVKERKRKREKYAEKKKKEDE 1313
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 229 (85.7 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 52/133 (39%), Positives = 80/133 (60%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
+K K ++FS K+L +L++ AAGF RLDGS +++R ++++EF + +
Sbjct: 459 RKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIKIVKEFNSTQD--VNI 516
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S A G G+N A+ V L +P WNPA + QA+DR +RIGQ DVK+ RLI ++E
Sbjct: 517 CLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVFRLISLGTVE 576
Query: 831 ERILELQDRKKKL 843
E + Q K++L
Sbjct: 577 EIMYLRQVYKQQL 589
Score = 170 (64.9 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 75/232 (32%), Positives = 114/232 (49%)
Query: 339 MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD----VEELK 394
M + S KK+ LIV P SV W +L+ G + + +G++ + V++ K
Sbjct: 125 MKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTW---GYFRVTILHGNKKDNELVRVKQRK 181
Query: 395 MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
++ LTTY TL + L S +EW VI+DEAH IKN A+ + + L R
Sbjct: 182 C-EIALTTYETLRLCLDELNS----LEWSAVIVDEAHKIKNPKARVTEVMKALKCNVRIG 236
Query: 455 VTGTPIQNGSFDLFSLMAF---------LQFEP-FSVK-SYWQ--SLIQRPLAQGNRKGL 501
+TGT +QN +L+ +M + + F+ FS + Q + +R LA G RK +
Sbjct: 237 LTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATG-RKAM 295
Query: 502 SRLQVLMSTISLRRTKDKGLIGLQ-PKTIEKY-YVELSLEERKLYDE-LEGK 550
RL +MS LRRTK LI Q PK ++ Y L+ ++ +Y LE K
Sbjct: 296 QRLAKMMSGWFLRRTKT--LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETK 345
Score = 65 (27.9 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 249 RGGIFADDMGLGKTLTLLSLIA 270
+G I DDMGLGKT+ ++S +A
Sbjct: 80 KGCILGDDMGLGKTVQVISFLA 101
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 276 (102.2 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 60/153 (39%), Positives = 92/153 (60%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M+ KKR++V++ F +P +L+S
Sbjct: 518 KVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSS- 576
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ SIEE+IL+
Sbjct: 577 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 636
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L +
Sbjct: 637 RQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFT 669
Score = 120 (47.3 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 57/276 (20%), Positives = 122/276 (44%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYST----LAI 408
++V P S+ W + + +L M G + + L+ + + T ++
Sbjct: 217 IVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISY 276
Query: 409 EESWLESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
E + + + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 277 ETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEY 336
Query: 468 FSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPK 527
+SL+ F+ E + ++ + + +G + + ++ +T++ LIGL +
Sbjct: 337 YSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQE---RQRAIEKTQE--LIGLVDQ 391
Query: 528 TIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLAL 587
I + ++ L L K + V+ + A L Y+ L+ Q+ +LA
Sbjct: 392 CIIRRTNQI------LTKYLPVKFEMVICAKLTAIQL-ELYTN----FLKSDQVRRSLAD 440
Query: 588 C--PSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDG 621
C + + ++ T++ + ++PDL+ + + + G
Sbjct: 441 CNEKASLTALADITTLKKICSHPDLIYEKLTAREKG 476
Score = 61 (26.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL ++L+
Sbjct: 180 GCIMADEMGLGKTLQCVTLV 199
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 239 (89.2 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 63/222 (28%), Positives = 108/222 (48%)
Query: 651 LKTLQHT-KPCCPLCRHPLLQSDLFSS-PPESSDMDIAGKTLKNFTS-SKVSAXXXXXXX 707
+K LQ+T +C HP + D+ + P +++D+ + F ++
Sbjct: 1145 IKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNVDLLWRAAGKFELLDRILPKLFLTGH 1204
Query: 708 XRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767
K+++F Q +++ ++E+ L++ +K LRLDGS + R ++ +F +P
Sbjct: 1205 --------KTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDP-KSD 1255
Query: 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827
+ + S +A G G+NL A V + + WNP + QA DR HRIGQ ++V+I+RLI
Sbjct: 1256 VYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEK 1315
Query: 828 SIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
SIEE IL K L + + D + + L SL
Sbjct: 1316 SIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSL 1357
Score = 174 (66.3 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 75/272 (27%), Positives = 135/272 (49%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD----RT-QDVEELKMYDLVLTTYSTLA 407
LI+ P S + WI + E+ P + K Y G +T Q ++++LTT+ +
Sbjct: 922 LIIVPLSTLTNWIMEFEKWA-PSV-KKIAYKGPPQLRKTLQSQIRSSNFNVLLTTFEYI- 978
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
I++ L S +I+W +I+DE H IKN ++ + T+ T +++ R ++TGTP+QN +
Sbjct: 979 IKDRPLLS---RIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPE 1035
Query: 467 LFSLMAFLQFEPF-SVKSYWQSLIQRPLAQ--GNRK-GLS---------RLQVLMSTISL 513
L++L+ F+ + F S+KS+ P A G K GL+ RL ++
Sbjct: 1036 LWALLNFVLPKIFNSIKSF-DEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLF 1094
Query: 514 RRTKDKGLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVL 572
RR K K + P +EK LS + KLY ++ K G++ +++ +
Sbjct: 1095 RRLK-KDVEKELPDKVEKVIKCPLSGLQLKLYQQM--KKHGML--FVDGEKGKTGIKGLQ 1149
Query: 573 SILLRLRQICTNLALCPSDVRSIIPSNTIEDV 604
+ +++L++IC + + R+I PS T D+
Sbjct: 1150 NTVMQLKKICNHPFIFEDVERAIDPSGTNVDL 1181
Score = 60 (26.2 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ ++ I
Sbjct: 890 GILADEMGLGKTIQTIAFI 908
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 250 (93.1 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 64/175 (36%), Positives = 94/175 (53%)
Query: 673 LFSSPPES--SDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILL 730
L+S P++ S + I GK S K+ A R K + +++SQ +M+ LL
Sbjct: 1080 LWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT--RLKSQGHRVLIYSQMTRMIDLL 1137
Query: 731 EEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRV 790
EE + +RLDGS +R ++ +F N V L S +A G G+NLTAA V
Sbjct: 1138 EEYMVYRKHTYMRLDGSSKISERRDMVADFQNRND--IFVFLLSTRAGGLGINLTAADTV 1195
Query: 791 FLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAR 845
+ WNP V++QAMDR HR+GQ + V + RLI + +IEERIL+ K ++ R
Sbjct: 1196 IFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQR 1250
Score = 167 (63.8 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 59/256 (23%), Positives = 121/256 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD--------RTQDVEELKMYD----LVL 400
LI+ P S + W + VP K Y+G+ R + L D +V+
Sbjct: 574 LIISPASTLNNWHQEFTRF-VP-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 631
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+Y + + + + +++W ++LDEA +K++++ + + + + R ++TGTPI
Sbjct: 632 TSYQLVVQDVKYFQ----RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 687
Query: 461 QNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQG----NRKGLSRLQVLMSTISL 513
QN +L++L+ F+ F+ + W S A+ + LSRL +++ L
Sbjct: 688 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFML 747
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINA--GSLMRNYST- 570
RR K L K Y +L+ ++ LY L+ K ++D + + GS + +T
Sbjct: 748 RRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKIS--IEDLLQSSMGSTQQAQTTT 805
Query: 571 --VLSILLRLRQICTN 584
+++++++ R++C +
Sbjct: 806 SSLMNLVMQFRKVCNH 821
Score = 64 (27.6 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++L+A
Sbjct: 542 GILADEMGLGKTVQSIALLA 561
Score = 40 (19.1 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 663 LCRHPLLQSDLFSS 676
LC PLL+S +FSS
Sbjct: 966 LCSCPLLKSLVFSS 979
Score = 39 (18.8 bits), Expect = 2.6e-14, Sum P(4) = 2.6e-14
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDV 390
W+ L E + G+L M G Q +
Sbjct: 531 WLANLYEQGINGILADEMGLGKTVQSI 557
Score = 38 (18.4 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 830 EERILELQDRKKKLAREAFRRKGKDQ 855
+E +++RK+K + A ++K +D+
Sbjct: 1292 QEETNRVKERKRKREKYAEKKKKEDE 1317
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 262 (97.3 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 70/222 (31%), Positives = 102/222 (45%)
Query: 648 SC-ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGK-TLKNFTSSKVSAXXXXX 705
SC ++ + K CC HP L F S E + G + + T +
Sbjct: 1007 SCSLINIMMDLKKCC---NHPYL----FPSAAEEATTAAGGLYEINSLTKAAGKLVLLSK 1059
Query: 706 XXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGP 765
+ K + ++FSQ KML +LE+ L+ +K R+DG + R + I+ F PG
Sbjct: 1060 MLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPG- 1118
Query: 766 GGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIV 825
V L S +A G G+NL A V + + WNP + QA R HRIGQ V I R +
Sbjct: 1119 AQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVT 1178
Query: 826 RNSIEERILELQDRKKKLA----REAFRRKGKDQREVSTDDL 863
RNS+EER+ ++ RK L R KG + + DD+
Sbjct: 1179 RNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDI 1220
Score = 158 (60.7 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 49/195 (25%), Positives = 97/195 (49%)
Query: 396 YDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVV 455
++++LT+Y ++++ + L S I+W +++DEAH +K+ ++ R + + + ++
Sbjct: 847 FNVLLTSYELISMDAACLGS----IDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLL 902
Query: 456 TGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRR 515
TGTP+QN +LF L+ FL + F+ +Q + + RL ++ LRR
Sbjct: 903 TGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADV---SKEEQVKRLHEMLGPHMLRR 959
Query: 516 TKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL 575
K L + K+ VELS ++K Y + K + GS ++++I+
Sbjct: 960 LKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSC-----SLINIM 1014
Query: 576 LRLRQICTNLALCPS 590
+ L++ C + L PS
Sbjct: 1015 MDLKKCCNHPYLFPS 1029
Score = 54 (24.1 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 252 IFADDMGLGKTL-TLLSLIALDK---CAG 276
I AD+MGLGKT+ T+ L +L K C G
Sbjct: 752 ILADEMGLGKTIQTVTFLYSLYKEGHCRG 780
Score = 43 (20.2 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 658 KPCCPLCRHPLLQS-DLFSSPPESSDMDIAGKTLKNFTSSKVSA 700
KPC P+ R L Q +PP ++D + T + T + +A
Sbjct: 1519 KPCEPV-RSALKQDVAALEAPPTGGNVDKSATTSNSVTPATSAA 1561
Score = 40 (19.1 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 643 HIFCRSCILKTLQHTKPCCPLCRHPLL 669
H FC + L T+ CP C P L
Sbjct: 460 HTFCLNPPLDTIPDGDWRCPRCSCPPL 486
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 250 (93.1 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 64/175 (36%), Positives = 94/175 (53%)
Query: 673 LFSSPPES--SDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILL 730
L+S P++ S + I GK S K+ A R K + +++SQ +M+ LL
Sbjct: 1086 LWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT--RLKSQGHRVLIYSQMTRMIDLL 1143
Query: 731 EEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRV 790
EE + +RLDGS +R ++ +F N V L S +A G G+NLTAA V
Sbjct: 1144 EEYMVYRKHTYMRLDGSSKISERRDMVADFQNRND--IFVFLLSTRAGGLGINLTAADTV 1201
Query: 791 FLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAR 845
+ WNP V++QAMDR HR+GQ + V + RLI + +IEERIL+ K ++ R
Sbjct: 1202 IFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQR 1256
Score = 167 (63.8 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 59/256 (23%), Positives = 121/256 (47%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD--------RTQDVEELKMYD----LVL 400
LI+ P S + W + VP K Y+G+ R + L D +V+
Sbjct: 580 LIISPASTLNNWHQEFTRF-VP-KFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 637
Query: 401 TTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
T+Y + + + + +++W ++LDEA +K++++ + + + + R ++TGTPI
Sbjct: 638 TSYQLVVQDVKYFQ----RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 693
Query: 461 QNGSFDLFSLMAFLQ---FEPFSVKSYWQSLIQRPLAQG----NRKGLSRLQVLMSTISL 513
QN +L++L+ F+ F+ + W S A+ + LSRL +++ L
Sbjct: 694 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFML 753
Query: 514 RRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINA--GSLMRNYST- 570
RR K L K Y +L+ ++ LY L+ K ++D + + GS + +T
Sbjct: 754 RRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKIS--IEDLLQSSMGSTQQAQTTT 811
Query: 571 --VLSILLRLRQICTN 584
+++++++ R++C +
Sbjct: 812 SSLMNLVMQFRKVCNH 827
Score = 64 (27.6 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 251 GIFADDMGLGKTLTLLSLIA 270
GI AD+MGLGKT+ ++L+A
Sbjct: 548 GILADEMGLGKTVQSIALLA 567
Score = 40 (19.1 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 663 LCRHPLLQSDLFSS 676
LC PLL+S +FSS
Sbjct: 972 LCSCPLLKSLVFSS 985
Score = 39 (18.8 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDV 390
W+ L E + G+L M G Q +
Sbjct: 537 WLANLYEQGINGILADEMGLGKTVQSI 563
Score = 38 (18.4 bits), Expect = 1.8e-29, Sum P(5) = 1.8e-29
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 830 EERILELQDRKKKLAREAFRRKGKDQ 855
+E +++RK+K + A ++K +D+
Sbjct: 1298 QEETNRVKERKRKREKYAEKKKKEDE 1323
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 234 (87.4 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F Q +++ ++E+ L+ G K LRLDGS + R+ +++ F P LL S +A
Sbjct: 876 LMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFLL-STRA 934
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NL A V + + WNP + QA DR HRIGQK +V+I+RLI NS+EE+ILE
Sbjct: 935 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSNSVEEKILERA 994
Query: 838 DRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
K + + + D + + + +L +L
Sbjct: 995 QFKLDMDGKVIQAGKFDNKSTNEERDALLRTL 1026
Score = 169 (64.5 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 72/254 (28%), Positives = 122/254 (48%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM--YDLVLTTYSTLA 407
L++ P S + W + E+ P + + +Y G R Q + ++ + ++LTTY +
Sbjct: 590 LVIVPLSTLTNWNLEFEKWA-PSVSRI-VYKGPPNARKQQQQNIRWGNFQVLLTTYEYII 647
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKR-RWVVTGTPIQNGSFD 466
+ L KI+W +I+DE H +KN ++ S T++ R R ++TGTP+QN +
Sbjct: 648 KDRPILS----KIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPE 703
Query: 467 LFSLMAFLQFEPF-SVKSYWQSLIQRPLAQ--G-NRKGLS---------RLQVLMSTISL 513
L++L+ F+ F SVKS+ P A G +R L+ RL ++ L
Sbjct: 704 LWALLNFVLPNIFKSVKSF-DEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHKVLRPFLL 762
Query: 514 RRTK---DKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST 570
RR K +K L Q + I+ + L + KL +L K VV D MR S
Sbjct: 763 RRLKKDVEKDLPDKQERVIKCRFSAL---QAKLNKQLATHNKMVVSDGKGGKVGMRGLS- 818
Query: 571 VLSILLRLRQICTN 584
++L++LR++C +
Sbjct: 819 --NMLMQLRKLCNH 830
Score = 67 (28.6 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ +SLI
Sbjct: 558 GILADEMGLGKTIQTISLI 576
Score = 38 (18.4 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIV---RLIVRNSIEE 831
L+A + + V +L + +VEE+ ++R + D K++ + +++ EE
Sbjct: 960 LQAQDRAHRIGQKNEVRILRLITSNSVEEKILERA-QFKLDMDGKVIQAGKFDNKSTNEE 1018
Query: 832 RILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
R L+ + E + G DQ E+ DDL +M+
Sbjct: 1019 RDALLRTLLE--TAEGTDQAG-DQDEMDDDDLNNIMA 1052
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 279 (103.3 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 61/153 (39%), Positives = 91/153 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M KKR++V++ F +P +L+S
Sbjct: 512 KVVLISNYTQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSS- 570
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ SIEE+IL+
Sbjct: 571 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 630
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L S
Sbjct: 631 RQTHKKSLSSTIIDNNESSEKHFTRDDLKDLFS 663
Score = 119 (46.9 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 65/277 (23%), Positives = 123/277 (44%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEELKMYDLVLTTYSTLAIE 409
+IV P S+ W + + M M G D T+ +E+ M L I
Sbjct: 210 IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRALEQFAMNTATRCGTPVLLIS 269
Query: 410 -ESW-LESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E++ L + + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 270 YETFRLYAHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 329
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
FSL+ F+ E + ++ + + +G + + +L++T++ LIGL
Sbjct: 330 YFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTDAE---RQRALQKTQE--LIGLVN 384
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLA 586
+ I + ++ L L K + VV + L + + L+ Q+ +LA
Sbjct: 385 QCIIRRTNQI------LTKYLPVKFEMVVCVKLTPVQLQ-----IYTNFLKSDQVRRSLA 433
Query: 587 LC--PSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDG 621
C + + ++ T++ + N+PDL+ + + + G
Sbjct: 434 DCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKG 470
Score = 58 (25.5 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 250 GGIFADDMGLGKTLTLLSL 268
G I AD+MGLGKTL ++L
Sbjct: 173 GCIMADEMGLGKTLQCVTL 191
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 229 (85.7 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 52/133 (39%), Positives = 80/133 (60%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
+K K ++FS K+L +L++ AAGF RLDGS +++R ++++EF + +
Sbjct: 521 RKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIKIVKEFNSTQD--VNI 578
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S A G G+N A+ V L +P WNPA + QA+DR +RIGQ DVK+ RLI ++E
Sbjct: 579 CLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVFRLISLGTVE 638
Query: 831 ERILELQDRKKKL 843
E + Q K++L
Sbjct: 639 EIMYLRQVYKQQL 651
Score = 170 (64.9 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 75/232 (32%), Positives = 114/232 (49%)
Query: 339 MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD----VEELK 394
M + S KK+ LIV P SV W +L+ G + + +G++ + V++ K
Sbjct: 187 MKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTW---GYFRVTILHGNKKDNELVRVKQRK 243
Query: 395 MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
++ LTTY TL + L S +EW VI+DEAH IKN A+ + + L R
Sbjct: 244 C-EIALTTYETLRLCLDELNS----LEWSAVIVDEAHKIKNPKARVTEVMKALKCNVRIG 298
Query: 455 VTGTPIQNGSFDLFSLMAF---------LQFEP-FSVK-SYWQ--SLIQRPLAQGNRKGL 501
+TGT +QN +L+ +M + + F+ FS + Q + +R LA G RK +
Sbjct: 299 LTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATG-RKAM 357
Query: 502 SRLQVLMSTISLRRTKDKGLIGLQ-PKTIEKY-YVELSLEERKLYDE-LEGK 550
RL +MS LRRTK LI Q PK ++ Y L+ ++ +Y LE K
Sbjct: 358 QRLAKMMSGWFLRRTKT--LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETK 407
Score = 65 (27.9 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 249 RGGIFADDMGLGKTLTLLSLIA 270
+G I DDMGLGKT+ ++S +A
Sbjct: 142 KGCILGDDMGLGKTVQVISFLA 163
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 274 (101.5 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 59/153 (38%), Positives = 92/153 (60%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M+ KKR++V++ F +P +L+S
Sbjct: 518 KVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSS- 576
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I R++ SIEE+IL+
Sbjct: 577 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQ 636
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L +
Sbjct: 637 RQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFT 669
Score = 121 (47.7 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 45/189 (23%), Positives = 84/189 (44%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYST----LAI 408
++V P S+ W + + +L M G + + L+ + + + T ++
Sbjct: 217 IVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISY 276
Query: 409 EESWLESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
E + + + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 277 ETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEY 336
Query: 468 FSLMAFLQFEPFSV----KSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIG 523
+SL+ F+ E K ++S I R + +G R + + T L D+ +I
Sbjct: 337 YSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEG-ERQRAIEKTQELIGLVDQCIIR 395
Query: 524 LQPKTIEKY 532
+ + KY
Sbjct: 396 RTNQILTKY 404
Score = 61 (26.5 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL ++L+
Sbjct: 180 GCIMADEMGLGKTLQCVTLV 199
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 232 (86.7 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 53/152 (34%), Positives = 85/152 (55%)
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++F Q +++ ++E+ L+ K LRLDG + +R++++ F P +L S +A
Sbjct: 1107 LIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFIL-STRA 1165
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G G+NL A V + + WNP + QA DR HRIGQK +V+I+RLI NS+EE ILE
Sbjct: 1166 GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERA 1225
Query: 838 DRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+K + + + D + S + +L SL
Sbjct: 1226 YKKLDIDGKVIQAGKFDNKSTSEEQEALLRSL 1257
Score = 175 (66.7 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 76/292 (26%), Positives = 143/292 (48%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ-DVEELKM----YDLVLTTYSTLA 407
L++ P S S W ++ + P L+T + G + ++ K+ +D+VLTT+ +
Sbjct: 820 LVIVPLSTLSNWSSEFAKWA-P-TLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYII 877
Query: 408 IEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTV-TNLNAKRRWVVTGTPIQNGSFD 466
E + L K++W +I+DE H +KNA ++ S T+ T+ +A R ++TGTP+QN +
Sbjct: 878 KERALLS----KVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPE 933
Query: 467 LFSLMAFLQFEPF-SVKSYWQSLIQRPLAQ--GNRK-GLS---------RLQVLMSTISL 513
L++L+ F+ + F SVKS+ P A G K LS RL ++ L
Sbjct: 934 LWALLNFVLPKIFNSVKSF-DEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLL 992
Query: 514 RRTKDKGLIGLQPKTIEKYY-VELSLEERKLYDELEGKAKGVVQDYINAGSL-MRNYSTV 571
RR K K + P +EK ++S ++ +Y ++ + + D N + +R ++
Sbjct: 993 RRLK-KDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQ 1051
Query: 572 LSILLRLRQICTNLALCPSDVRSIIPSNTIED----VSNNPDLLKKLVEVLQ 619
+ ++L++IC + + I P+ D V+ +LL +++ L+
Sbjct: 1052 I---MQLKKICNHPFVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLK 1100
Score = 65 (27.9 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI AD+MGLGKT+ +SL+
Sbjct: 788 GILADEMGLGKTIQTISLL 806
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 800 AVEEQAMDRVHRIGQKEDVK---IVRLIVRNSIEERILEL--QDRKKK 842
A EE+ R + ++E++K I ++ RN E +L +DR KK
Sbjct: 1260 AEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKK 1307
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 276 (102.2 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 61/153 (39%), Positives = 92/153 (60%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M+ KKR++V++ F +P +L+S
Sbjct: 516 KVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSS- 574
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ SIEE+IL+
Sbjct: 575 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 634
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L S
Sbjct: 635 RQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFS 667
Score = 118 (46.6 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 46/189 (24%), Positives = 84/189 (44%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTT-YST----LA 407
+IV P S+ W + + M M G + V L+ + + +T T ++
Sbjct: 213 IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLIS 272
Query: 408 IEESWLESPVK-KIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E + + + K E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 273 YETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 332
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLS---RLQVLMSTISLRRTKDKGLIG 523
FSL+ F+ E + ++ + + +G + R + L T L + D+ +I
Sbjct: 333 YFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIR 392
Query: 524 LQPKTIEKY 532
+ + KY
Sbjct: 393 RTNQILTKY 401
Score = 61 (26.5 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL ++L+
Sbjct: 176 GCIMADEMGLGKTLQCVALV 195
Score = 40 (19.1 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 159 KERKGERGVKSVDEIFKLVDK 179
KER +R ++ E+ KLVD+
Sbjct: 370 KER--DRALEKTQELIKLVDQ 388
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 221 (82.9 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 50/133 (37%), Positives = 80/133 (60%)
Query: 711 KKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770
+K K ++FS K+L +L++ A+G RLDGS +++R ++++EF + +
Sbjct: 532 RKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQD--VNI 589
Query: 771 LLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830
L S A G G+N A+ V L +P WNPA + QA+DR +RIGQ DVK++RLI ++E
Sbjct: 590 CLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649
Query: 831 ERILELQDRKKKL 843
E + Q K++L
Sbjct: 650 EIMYLRQIYKQQL 662
Score = 173 (66.0 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 63/224 (28%), Positives = 104/224 (46%)
Query: 339 MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD----VEELK 394
M + S KK+ LIV P SV W +L+ G + + +G+R + V++ K
Sbjct: 198 MKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW---GYFRVTVLHGNRKDNELIRVKQRK 254
Query: 395 MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
++ LTTY TL + L S +EW VI+DEAH IKN A+ + + L R
Sbjct: 255 C-EIALTTYETLRLCLDELNS----LEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIG 309
Query: 455 VTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLR 514
+TGT +QN +L+ +M + +Y++ P+ G R ++ ++ +++
Sbjct: 310 LTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQ 369
Query: 515 RTKDK--GLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQ 556
R K G + KT+ K + E+R +Y L K V Q
Sbjct: 370 RLAKKMSGWFLRRTKTLIKDQLPKK-EDRMVYCSLTDFQKAVYQ 412
Score = 63 (27.2 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 250 GGIFADDMGLGKTLTLLSLIA 270
G I DDMGLGKT+ ++S +A
Sbjct: 154 GCILGDDMGLGKTVQVISFLA 174
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 232 (86.7 bits), Expect = 2.7e-29, Sum P(4) = 2.7e-29
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQ +ML +L + F RLDGSM+ +R + I F N P + L S
Sbjct: 595 KVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSF-NTDPD-VFIFLVST 652
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
+A G G+NLTAA V + + WNP + QA DR HRIGQ V + RL+ N+I+++I+E
Sbjct: 653 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVE 712
Query: 836 LQDRKKKLAR 845
K+KL +
Sbjct: 713 RAAAKRKLEK 722
Score = 157 (60.3 bits), Expect = 2.7e-29, Sum P(4) = 2.7e-29
Identities = 56/212 (26%), Positives = 104/212 (49%)
Query: 354 IVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQ------DVEE----LKMYDLVLTT 402
+VC P S W+ + + T P + T +Y+G + + + E L+++ +V+T+
Sbjct: 253 LVCGPLSTLPNWMAEFKRFT-PE-IPTMLYHGTQQERRILVKHIHERKGTLQIHPVVITS 310
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
+ +A+ + + ++ W +I+DE H IKN + R + NA + ++TGTP+QN
Sbjct: 311 FE-IAMRD---RTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQN 366
Query: 463 GSFDLFSLMAFLQFEPFS-VKSY--W---QSLIQRP---LAQGNRKG-LSRLQVLMSTIS 512
+L+SL+ FL + F +KS+ W SL + +A+ + L L +++
Sbjct: 367 NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFL 426
Query: 513 LRRTKDKGLIGLQPKTIEKYYVELSLEERKLY 544
LRR K + + PK Y LS ++ Y
Sbjct: 427 LRRLKSDVALEVPPKREVVVYAPLSKKQEIFY 458
Score = 70 (29.7 bits), Expect = 2.7e-29, Sum P(4) = 2.7e-29
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKT+ ++ IAL GV PG
Sbjct: 222 GILADEMGLGKTVQCIATIALMIQRGV-PG 250
Score = 42 (19.8 bits), Expect = 2.7e-29, Sum P(4) = 2.7e-29
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 685 IAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQ 722
I +T+ N S R K+ T KSV +S+
Sbjct: 461 IVNRTIANMFGSSEKETVELSPTGRPKRRTRKSVDYSK 498
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 273 (101.2 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 73/212 (34%), Positives = 111/212 (52%)
Query: 663 LCRHP-LLQ-SDLFSSPPE---SSDMDIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTT-- 715
LC HP LL D F + D ++ G ++ +K SA K T
Sbjct: 614 LCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARD-VQTKYSAKFSILERFLHKIKTESD 672
Query: 716 -KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
K V+ S + + L L+E+ + + +RLDG+M+ KR ++++ F +P G + L S
Sbjct: 673 DKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDP-EGQEFIFLLS 731
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
KA G G+NL A+R+ L++P WNPA ++QA+ RV R GQK+D I R I +IEE+I
Sbjct: 732 SKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIF 791
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRIL 866
+ Q K L+ K +R S+D+LR L
Sbjct: 792 QRQSMKMSLSSCVVDAKEDVERLFSSDNLRQL 823
Score = 124 (48.7 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 56/228 (24%), Positives = 101/228 (44%)
Query: 348 GKKIT---LIVCPPSVFSTWITQLEEHTVPGML--------KTYMYYGDRT--QDVEELK 394
GK++ +IVCP S+ + W +L + P L K+ M G+ T Q +
Sbjct: 359 GKRLIDKCIIVCPSSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWA 418
Query: 395 MYDLVLTTYSTLAIEESWLESPVKKIEWWRV---ILDEAHVIKNANAQQSRTVTNLNAKR 451
L I L V +++ V + DE H +KN ++ + +++ R
Sbjct: 419 QAQGRNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPR 478
Query: 452 RWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN---------RKGLS 502
R +++GTPIQN + F+L++F ++ ++ + P+ +G KG +
Sbjct: 479 RVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEA 538
Query: 503 RLQVLMSTIS---LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDEL 547
+LQ L + +S +RRT D L K +V L + +LY++L
Sbjct: 539 QLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKL 586
Score = 61 (26.5 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 241 TDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
T++ G I AD+MGLGKTL ++L+
Sbjct: 321 TEQNNRGAYGCIMADEMGLGKTLQCIALM 349
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 165 (63.1 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 48/153 (31%), Positives = 78/153 (50%)
Query: 684 DIAGKTLKNFTSSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLR 743
+I LK+ +K+ R+ P +S+VFSQ++ L L A F+ +
Sbjct: 1155 EIKNIDLKDSFGTKIDTLARHILWLREHDPGAQSIVFSQYKGFLDYL-----ANAFRRFK 1209
Query: 744 LDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEE 803
+ S + + IE+F PG LL + KA +G+NL A+ VFL EP N A+E
Sbjct: 1210 IGYS--SVDESDGIEKF-KKDPGIECFLLHA-KAHSSGLNLVNATHVFLCEPLINTAIEL 1265
Query: 804 QAMDRVHRIGQKEDVKIVRLIVRNSIEERILEL 836
QA+ RVHRIGQ + ++ +++E+ I ++
Sbjct: 1266 QAIARVHRIGQHRPTTVWMYLISDTVEKSIYDI 1298
Score = 162 (62.1 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 46/140 (32%), Positives = 76/140 (54%)
Query: 414 ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAF 473
+SP+ KI WWRV LDEA +I++ + ++ + W VTGTP++ DL L+ F
Sbjct: 407 KSPLIKISWWRVCLDEAQMIESGISNAAKVARLIPRHIAWAVTGTPLRKDVTDLLGLLLF 466
Query: 474 LQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD--KGLIGLQP-KTIE 530
L++EPF W+ L + L+R+ ++TI+LR +K+ + + L P K I
Sbjct: 467 LRYEPFC-GPIWKRLCDATF----KPVLARI---VNTITLRHSKNFIREELHLPPQKRIV 518
Query: 531 KYYVELSLEE---RKLYDEL 547
++EE R+LY+E+
Sbjct: 519 ITVPFTAVEEQSYRQLYEEM 538
Score = 83 (34.3 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 14/28 (50%), Positives = 24/28 (85%)
Query: 246 EPLRGGIFADDMGLGKTLTLLSLIALDK 273
E L+GG+ A++MGLGKT+ ++SL+ L++
Sbjct: 273 EHLKGGVLAEEMGLGKTVEMISLMCLNR 300
Score = 78 (32.5 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT------QDVEELKM-YDLVLTTYS 404
TLI+ PP + W ++E H P L+ + Y G + Q++ EL D+VLTTY+
Sbjct: 323 TLIITPPVILGQWKQEIELHA-P-KLQVFHYTGIQRHPTLSDQELVELMADNDVVLTTYN 380
Query: 405 TLAIE 409
LA E
Sbjct: 381 VLARE 385
Score = 65 (27.9 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 639 TCCAHIFCRSCI-LKTLQHTKPCCPLCRHPLLQSDLF 674
T C H +C+ C+ L QH CP+C+ L +D +
Sbjct: 1080 TVCGHKYCKDCLRLWWRQHRT--CPVCKKRLGANDFY 1114
Score = 49 (22.3 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 200 ELFVHQKEGLGWLVRRENSE 219
ELF Q+ + WL+ RE E
Sbjct: 200 ELFPFQRRAVRWLLNREGKE 219
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 233 (87.1 bits), Expect = 3.9e-29, Sum P(3) = 3.9e-29
Identities = 52/149 (34%), Positives = 87/149 (58%)
Query: 709 RDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768
R K+ + +VFSQFR + +LE L+ K +RLDG+ + + R +++ F + P
Sbjct: 937 RFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQSIMDTF-HENTDIP 995
Query: 769 TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828
LL S KA GAG+NL A++V + + +NP + QA +R HR+GQ +V+++RL+ +++
Sbjct: 996 VFLL-STKAGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTREVEVIRLVTKDT 1054
Query: 829 IEERILELQDRKKKLAREAFRRKGKDQRE 857
IEE+I L K L + G D ++
Sbjct: 1055 IEEQIYALGQTKLALDQAVAGEDGADSKK 1083
Score = 171 (65.3 bits), Expect = 3.9e-29, Sum P(3) = 3.9e-29
Identities = 62/245 (25%), Positives = 123/245 (50%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM----YDLVLTTYST 405
L+V P S W+ + ++ P L YY D R Q E+++ ++V+TTY+
Sbjct: 616 LVVVPSSTIENWLREFQKFC-P-TLSVMPYYADQNVRAQIREQIEGNRDDINVVITTYT- 672
Query: 406 LAIEESWLESP-VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
I + +++ ++ +++ + DE H++K++ + + + A+ R ++TGTP+QN
Sbjct: 673 --IAKGKVDAHFLRNMDFCACVYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQNNL 730
Query: 465 FDLFSLMAFLQFEPFSVKS----YWQSLIQRPLAQGNRKGLS-----RLQVLMSTISLRR 515
+L SL+ F+ + F + Y S + + + + LS R + ++ LRR
Sbjct: 731 QELASLLGFILPKVFQERKDDLQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFVLRR 790
Query: 516 TKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL 575
K + +I L K Y E++ +R++Y+ + + K +++D AG N S +IL
Sbjct: 791 KKHQ-VIDLPAKISRVEYCEMNAAQREIYEHEKNEVKKLLEDRA-AGKKTGNKSA--NIL 846
Query: 576 LRLRQ 580
++LRQ
Sbjct: 847 MKLRQ 851
Score = 59 (25.8 bits), Expect = 3.9e-29, Sum P(3) = 3.9e-29
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 252 IFADDMGLGKTLTLLSLIA 270
I ADDMGLGKT +++ +A
Sbjct: 586 ILADDMGLGKTCQVIAFLA 604
Score = 37 (18.1 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 569 STVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPD 609
ST+ + L ++ C L++ P + + E + N D
Sbjct: 622 STIENWLREFQKFCPTLSVMPYYADQNVRAQIREQIEGNRD 662
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 230 (86.0 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 51/130 (39%), Positives = 76/130 (58%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++FSQ +ML +L + F RLDGSM+ +R + + F N P + L S
Sbjct: 618 KVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSF-NTDPD-VFIFLVST 675
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
+A G G+NLTAA V + + WNP + QA DR HRIGQ + V + RL+ N+I+++I+E
Sbjct: 676 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 735
Query: 836 LQDRKKKLAR 845
K+KL +
Sbjct: 736 RAAAKRKLEK 745
Score = 158 (60.7 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 57/212 (26%), Positives = 105/212 (49%)
Query: 354 IVCPP-SVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEE-------LKMYDLVLTT 402
+VC P S W+ + + T P + T +Y+G +R + V+ L+++ +V+T+
Sbjct: 276 LVCGPLSTLPNWMAEFQRFT-PD-IPTMLYHGTQQERRKLVKNIHKRKGTLQIHPVVITS 333
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
+ +A+ + + ++ W +I+DE H IKN + R + NA + ++TGTP+QN
Sbjct: 334 FE-IAMRD---RNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQN 389
Query: 463 GSFDLFSLMAFLQFEPFS-VKSY--W---QSLIQRP---LAQGNRKG-LSRLQVLMSTIS 512
+L+SL+ FL + F +KS+ W SL + +A+ + L L +++
Sbjct: 390 NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFL 449
Query: 513 LRRTKDKGLIGLQPKTIEKYYVELSLEERKLY 544
LRR K + + PK Y LS ++ Y
Sbjct: 450 LRRLKSDVALEVPPKREVVVYAPLSKKQEIFY 481
Score = 70 (29.7 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
GI AD+MGLGKT+ ++ IAL GV PG
Sbjct: 245 GILADEMGLGKTVQCIATIALMIQRGV-PG 273
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 232 (86.7 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 70/241 (29%), Positives = 110/241 (45%)
Query: 642 AHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFT------- 694
+H+ C + K H PC L + + + S+ E+ + + LK F
Sbjct: 476 SHLICIGALKKLCNH--PC--LLFSSVKEKECSSAWDENEERRLYEDLLKVFPPDYNPLM 531
Query: 695 -----SSKVSAXXXXXXXXRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749
S K+ + +P K V+ S + + L +L+E + G+ RLDG
Sbjct: 532 FAEEESGKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNILQEVCRRHGYGCTRLDGQTP 591
Query: 750 AKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRV 809
+R Q+++ F N + L S KA G G+NL S + L + WNPA + QAM RV
Sbjct: 592 ISQRQQIVDGF-NSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRV 650
Query: 810 HRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFR-RKGKDQREVSTDDLRILMS 868
R GQK V I RL+ +IEE+I + Q K+ L+ K D + S ++L+ L +
Sbjct: 651 WRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTKTSDHIQFSVEELKNLFT 710
Query: 869 L 869
L
Sbjct: 711 L 711
Score = 149 (57.5 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 65/257 (25%), Positives = 119/257 (46%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-RTQDVEELKMYDLVLTTYSTLAI 408
K TLIV P S+ + W + ++ +K + D + ++ + +Y +++ +Y L
Sbjct: 252 KKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPDHKVEEFTKSPLYSVLIISYEMLLR 311
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
L+ +K I++ +I DE H +KN+ + + + +L ++R ++TGTP+QN + F
Sbjct: 312 S---LDQ-IKNIKFDLLICDEGHRLKNSAIKTTTALFSLPCEKRIILTGTPVQNDLQEFF 367
Query: 469 SLMAFLQ---FEPFSV--KSYWQSLI--QRPLAQGNRKGLSR-----LQVLMSTISLRRT 516
SL+ F+ S K Y + +I ++P A K L L L LRRT
Sbjct: 368 SLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKELGERRACELTCLTGLFILRRT 427
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
++ L PK + + +LY +L V+ + LM N S ++ I
Sbjct: 428 QEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQ--AVRFCLQG--LMENSSHLICIGA 483
Query: 577 RLRQICTNLALCPSDVR 593
L+++C + L S V+
Sbjct: 484 -LKKLCNHPCLLFSSVK 499
Score = 76 (31.8 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAG 276
G I AD+MGLGKTL +SLI +C G
Sbjct: 217 GAILADEMGLGKTLQCISLIWTLQCQG 243
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 275 (101.9 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 61/153 (39%), Positives = 91/153 (59%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K V+ S + + L L E+ + + +RLDG+M KKR++V++ F +P +L+S
Sbjct: 516 KVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKVVDRFNDPENDCFLFMLSS- 574
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I RL+ SIEE+IL+
Sbjct: 575 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 634
Query: 836 LQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q KK L+ ++ + DDL+ L S
Sbjct: 635 RQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFS 667
Score = 117 (46.2 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 45/178 (25%), Positives = 83/178 (46%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTY---STLAIE 409
+IV P S+ W + + M M G + ++ L+ + + +T L I
Sbjct: 214 IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLIS 273
Query: 410 -ESW--LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E++ + + + E VI DE H +KN++ + + L KRR +++GTPIQN +
Sbjct: 274 YETFRIYANILCQNEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 333
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGL 524
FSL+ F+ E + ++ + P+ +G S + +L +T++ LIGL
Sbjct: 334 YFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKE---RERALEKTQE--LIGL 386
Score = 61 (26.5 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 250 GGIFADDMGLGKTLTLLSLI 269
G I AD+MGLGKTL ++L+
Sbjct: 177 GCIMADEMGLGKTLQCVTLV 196
WARNING: HSPs involving 314 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 869 793 0.00096 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 564
No. of states in DFA: 624 (66 KB)
Total size of DFA: 371 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 64.27u 0.07s 64.34t Elapsed: 00:00:05
Total cpu time: 64.39u 0.08s 64.47t Elapsed: 00:00:05
Start: Thu May 9 23:25:09 2013 End: Thu May 9 23:25:14 2013
WARNINGS ISSUED: 2