BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002901
(869 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/870 (66%), Positives = 688/870 (79%), Gaps = 28/870 (3%)
Query: 5 QDQDWQECDQEQEEGSQSSNETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDS 64
+D+ + Q++ +E+Y++GFVIANIVGL+YYSG I+GREMVGLVREPLN YD+
Sbjct: 35 EDEFQSPVEPSQQQSQDCVSESYLIGFVIANIVGLKYYSGRINGREMVGLVREPLNVYDN 94
Query: 65 NAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTR 124
NA++VLNTR++QVGHIER+VAAVLAP+IDS I+VEGIVPNTRS NR++IPCQ+H+F +
Sbjct: 95 NAIRVLNTRSEQVGHIERTVAAVLAPMIDSHTIVVEGIVPNTRSNSNRYRIPCQIHVFAK 154
Query: 125 LEMFSIVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVKKK 184
LE S VK I GGL LIS +D SFGLSEA+VVKE+ G +SVD+IFKLVD+NVK
Sbjct: 155 LEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDKIFKLVDENVKLM 214
Query: 185 AKMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKR 244
K+ A EPP+EVIKSELF HQKEGLGWL+ RE S ELPPFWEEK G F+N LTNY +DKR
Sbjct: 215 GKLVAAEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKR 274
Query: 245 PEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKK 304
P+PLRGG+FADDMGLGKTLTLLSLIA D+ + S E D E K
Sbjct: 275 PDPLRGGVFADDMGLGKTLTLLSLIAFDRYGN------ASTSTPTEEPLDGEGDKIEKKG 328
Query: 305 RKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTW 364
+KRG+ + S KK KT D+V G +V +K TLIVCPPSV S W
Sbjct: 329 KKRGRGKSSESVTRKKLKT------DDVVGMNVS----------QKTTLIVCPPSVISAW 372
Query: 365 ITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWW 423
ITQLEEHTVPG+LK YMY+G +RT DV EL YD+VLTTY TLA+EESW +SPVKK+EW
Sbjct: 373 ITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAVEESWEDSPVKKMEWL 432
Query: 424 RVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKS 483
R+ILDEAH IKNANAQQSR V L A RRW VTGTPIQNGSFDL+SLMAFL+FEPFS+KS
Sbjct: 433 RIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKS 492
Query: 484 YWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKL 543
YWQSLIQRPL QGN+KGLSRLQVLM+TISLRRTK+K LIGL PKT+E YVELS EER+L
Sbjct: 493 YWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKSLIGLPPKTVETCYVELSPEERQL 552
Query: 544 YDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIED 603
YD +EG+AKGVVQ+ IN GSLMRNYSTVLSI+LRLRQ+C +++LCP ++RS S ++ED
Sbjct: 553 YDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVED 612
Query: 604 VSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPL 663
V++ P+LL+KLV LQDGEDFDCPICISPP++IIIT CAHIFCR+CIL+TLQ +KP CPL
Sbjct: 613 VTDKPELLQKLVAALQDGEDFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPL 672
Query: 664 CRHPLLQSDLFSS---PPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVF 720
CR L QSDL+++ PP+SS+ D + SSKVSALL+LL+ R + P TKSVVF
Sbjct: 673 CRGSLTQSDLYNAPPPPPDSSNTD-GEDAKSSTKSSKVSALLSLLMASRQENPNTKSVVF 731
Query: 721 SQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGA 780
SQFRKML+LLE PL+AAGF +LRLDG+M KKR QVI EFGNP GP VLLASLKASG
Sbjct: 732 SQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGT 791
Query: 781 GVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRK 840
G+NLTAASRV+L +PWWNPAVEEQAMDR+HRIGQK++VK++R+I RNSIEER+LELQ +K
Sbjct: 792 GINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKK 851
Query: 841 KKLAREAF-RRKGKDQREVSTDDLRILMSL 869
K LA EAF RR+ KD+REV+ +D+ LMSL
Sbjct: 852 KNLANEAFKRRQKKDEREVNVEDVVALMSL 881
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1
Length = 1003
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 353/963 (36%), Positives = 531/963 (55%), Gaps = 123/963 (12%)
Query: 20 SQSSNETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGH 79
S + + G + +VGL+YY+G ++ EMV L REP NPYD NA+KV N +QVGH
Sbjct: 51 SDEEQDLVLFGTMRGQVVGLRYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGH 110
Query: 80 IERSVAAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGG 139
I+R +AA +A ++D+ + VEG+VP S N F +P + + + E ++V + + + G
Sbjct: 111 IKREIAAAVAYIMDNKLAQVEGVVPFGAS--NTFTMPLYMTFWGKEENRNVVLEQLKKHG 168
Query: 140 LQLI-------SGNDVSFGLSEAMVVKERKGERGVK-SVDEIFKLVDK---NVKKKAKME 188
+L S + ++G A R V+ + D++ DK ++K+ +
Sbjct: 169 FKLGPTPKTLGSSLENAWGSGRAGPSYSRPAHVAVQMTTDQLKTEFDKLFEDLKEDDRTV 228
Query: 189 AMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPL 248
MEP E I++ L HQK+ L W++ RENS+ELPPFWE++ + N +TN+ +RPE +
Sbjct: 229 EMEP-AEAIETPLLPHQKQALAWMIARENSKELPPFWEQRNDLYYNTITNFSVKERPENV 287
Query: 249 RGGIFADDMGLGKTLTLLSLI----------------------------------ALDK- 273
GGI ADDMGLGKTLT +++I +DK
Sbjct: 288 HGGILADDMGLGKTLTAIAVILTNFDDGRPLLSKRGKKNHPGKEYKDETIKRRGSNMDKK 347
Query: 274 --------CAGVAPGLTGT---NSLDLNEV------------------EDEEMSASSSKK 304
G P ++GT +S L+++ + EE+ S +
Sbjct: 348 EDGHSESSTCGEEPSISGTPEKSSCTLSQLSSVCPKRRKISVQYIESSDSEEIETSELPQ 407
Query: 305 RKRGKMSN---------KGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMG------- 348
+ +GK+ N KGS++ K+ + + ML K S M
Sbjct: 408 KMKGKLKNVQLNTKSRVKGSSKVKEDSKFALTFFASATQRK--MLKKGMSMMECSEACDT 465
Query: 349 ---KKITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQDVEELKMYDLVLTTY 403
+ TLI+CP SV S WI Q +H + L Y+YYG DR +D L D++LTTY
Sbjct: 466 GERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTY 525
Query: 404 STLAIEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
+ L + +SP+ I+W RVILDE H I+N NAQQ++ V L A+RRWV+TGTPIQN
Sbjct: 526 NILTHDYGTKDDSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQN 585
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLI 522
DL+SL++FL+ +PF + +W +IQRP+ G+ GL RLQ L+ I+LRRTK +
Sbjct: 586 SLKDLWSLLSFLKLKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIK 645
Query: 523 G-----LQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLR 577
G L + + ++ LS EERK+Y ++ + K + Y G+++ +Y+ VL +LLR
Sbjct: 646 GKPVLELPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLR 705
Query: 578 LRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKK-LVE----VLQDGEDFDCPICISP 632
LRQIC + L + + S PS S+ P+ L+K L+E +L G D +C IC+
Sbjct: 706 LRQICCHTHLLTNGMSSSGPSR-----SDTPEELRKMLIEKMKIILSSGSDEECAICLDS 760
Query: 633 PSDIIITCCAHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMDIAGKTL 690
+ +IT CAH+FC+ CI + + +P CPLCR+ + +L PPE D ++
Sbjct: 761 LTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLECPPEELACDSDKESS 820
Query: 691 KNF-TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749
+ +SSK++AL+ L++LR K P KS+V SQF L L+E PL+A+GF RLDGSM
Sbjct: 821 MEWKSSSKINALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMA 880
Query: 750 AKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRV 809
KKR + I+ F N G PT++L SLKA G G+NL AASRVFL++P WNPA E+Q DR
Sbjct: 881 QKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRC 940
Query: 810 HRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRK---GKDQREVSTDDLRIL 866
HR+GQK++V I + IV++S+EE +L++Q+ K+ LA AF K D ++ +++R L
Sbjct: 941 HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTDANDMKQAKINEIRTL 1000
Query: 867 MSL 869
+ L
Sbjct: 1001 IDL 1003
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2
Length = 1009
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 340/962 (35%), Positives = 514/962 (53%), Gaps = 125/962 (12%)
Query: 25 ETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSV 84
++ + G + ++VGL+YY+G ++ EMV L R+P NPYD NA+KV N +QVGH+++ +
Sbjct: 56 DSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKEL 115
Query: 85 AAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL-I 143
A LA ++D+ + +EG+VP N F +P + + + E V D + + G +L
Sbjct: 116 AGALAYIMDNKLAQIEGVVP--FGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGP 173
Query: 144 SGNDVSFGL-----------SEAMVVK---ERKGERGVKSVDEIFKLVDKNVKKKAKMEA 189
+ + F L S +M V + E+ D++F+ ++K+ K
Sbjct: 174 APKTLGFNLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFE----DLKEDDKTHE 229
Query: 190 MEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVN--------------- 234
MEP E I++ L HQK+ L W+V RENS+ELPPFWE++ + N
Sbjct: 230 MEP-AEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVH 288
Query: 235 -------------------VLTNYHTDKRPEPLRG----------GIFADDMGLGKTLTL 265
+LTN+H D RP P+ + D M LG T
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFH-DGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTS 347
Query: 266 LSLIALDKCAGVAPGLTGTNSL-DLNEVEDEEMSASSSKKRK------------------ 306
L K A + + + ++ E+S+S K+RK
Sbjct: 348 EKADGLSKDASRCSEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSE 407
Query: 307 -----RGKMSN-----KGSARGKKHKTVN-----TKMDDNVKGKSVGMLNKSS-SFMGKK 350
+GK+ N KG A+ K + + +V ML K + + G K
Sbjct: 408 LPQKMKGKLKNVQSETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSK 467
Query: 351 ---------ITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQDVEELKMYDLV 399
TLI+CP SV S WI Q +H + L Y+YYG DR ++ L D+V
Sbjct: 468 KTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIV 527
Query: 400 LTTYSTLAIEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
LTTY+ L + +SP+ I W RVILDE H I+N NAQQ++ V +L ++RRWV+TGT
Sbjct: 528 LTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGT 587
Query: 459 PIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD 518
PIQN DL+SL++FL+ +PF + +W IQRP+ G+ GL RLQ L+ I+LRRTK
Sbjct: 588 PIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKT 647
Query: 519 KGLIG-----LQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLS 573
+ G L + + ++ LS EERK+Y ++ + + + Y N G+++ +Y+ VL
Sbjct: 648 SKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLG 707
Query: 574 ILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPP 633
+LLRLRQIC + L + V S PS L++K+ +L G D +C IC+
Sbjct: 708 LLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSL 767
Query: 634 SDIIITCCAHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMDIAGKTLK 691
+ +IT CAH+FC+ CI + +Q+ +P CPLCR+ + + +L PPE D K+
Sbjct: 768 TVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDM 827
Query: 692 NFTSS-KVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNA 750
+TSS K++AL+ L LR K P KS+V SQF L L+E PL+A+GF RLDGSM
Sbjct: 828 EWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQ 887
Query: 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810
KKR + I+ F N G PT++L SLKA G G+NL+AASRVFL++P WNPA E+Q DR H
Sbjct: 888 KKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCH 947
Query: 811 RIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRK---GKDQREVSTDDLRILM 867
R+GQK++V I + IV++S+EE +L++Q++K++LA AF K + ++ +++R L+
Sbjct: 948 RLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLI 1007
Query: 868 SL 869
L
Sbjct: 1008 DL 1009
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/551 (42%), Positives = 341/551 (61%), Gaps = 14/551 (2%)
Query: 333 KGKSVGMLNKSSSFMGK-KITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYYG-DRTQD 389
KG S + + F + + TLI+CP SV S WI Q +H + L Y+YYG DR +D
Sbjct: 455 KGASAQRVQRKLMFEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRD 514
Query: 390 VEELKMYDLVLTTYSTLAIEESWL-ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLN 448
L D+VLTTY+ L + +SP+ I W RVILDE H I+N NAQQ++ V +L
Sbjct: 515 PALLSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLE 574
Query: 449 AKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLM 508
A+RRWV+TGTPIQN DL+SL++FL+ +PF + +W IQRP+ G+ GL RLQ L+
Sbjct: 575 AERRWVLTGTPIQNSLKDLWSLLSFLKLKPFVDREWWHRTIQRPVTMGDEGGLRRLQSLI 634
Query: 509 STISLRRTKDKGLIG-----LQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGS 563
I+LRRTK + G L + + ++ LS EERK+Y ++ + K + Y N G+
Sbjct: 635 KNITLRRTKTSKIKGKPVLELPERPVFIQHITLSDEERKIYQSVKSEGKATIGRYFNEGT 694
Query: 564 LMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGED 623
++ +Y+ VL +LLRLRQIC + L + V S PS L+KK+ +L G D
Sbjct: 695 VLAHYADVLGLLLRLRQICCHTHLLTNTVSSSGPSGNDTPEELRKKLIKKMKLILSSGSD 754
Query: 624 FDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESS 681
+C IC+ + +IT CAH+FC+ CI + +Q+ +P CPLCR+ + +L PPE
Sbjct: 755 EECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNLLECPPEEL 814
Query: 682 DMDIAGKTLKNFTSS-KVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFK 740
D K+ +TSS K++AL+ L+ LR K P KS+V SQF L L+E PL+A+GF
Sbjct: 815 ACDSEKKSNMEWTSSSKINALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPLKASGFV 874
Query: 741 LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPA 800
RLDGSM KKR + I+ F N G PT++L SLKA G G+NL AASRVFL++P WNPA
Sbjct: 875 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPA 934
Query: 801 VEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAF--RRKGKDQREV 858
E+Q DR HR+GQK++V I + IV++S+EE +L++Q+ K++LA AF ++ + ++
Sbjct: 935 AEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKNANEMKQA 994
Query: 859 STDDLRILMSL 869
+++R L+ L
Sbjct: 995 KINEIRTLIDL 1005
Score = 173 bits (438), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 152/260 (58%), Gaps = 22/260 (8%)
Query: 25 ETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSV 84
++ + G + ++VGL+YY+G ++ EMV L REP NPYD NA+KV N +QVG++++ +
Sbjct: 56 DSVLFGTLRGHVVGLRYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGYLKKEL 115
Query: 85 AAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL-I 143
AA LA ++D+ + +EG+VP N F +P Q+ + + E V D + + G +L
Sbjct: 116 AAALAYIMDNKLAQIEGVVP--YGANNAFTMPLQMTFWGKEENRKAVLDQLKKHGFKLGP 173
Query: 144 SGNDVSFGL-----------SEAMVVK---ERKGERGVKSVDEIFKLVDKNVKKKAKMEA 189
+ + F L S +M V + E+ D++F+ ++K+ K +
Sbjct: 174 APKTLGFSLESGWGSGRAGPSYSMPVHAAIQMTTEQLKTEFDKLFE----DLKEDDKTQE 229
Query: 190 MEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLR 249
MEP E +++ L HQK+ L W+V RENS ELPPFWE + + N +TN+ +PE +
Sbjct: 230 MEP-AEAVETPLLPHQKQALAWMVSRENSRELPPFWELRNDLYYNTITNFSEKDQPENVH 288
Query: 250 GGIFADDMGLGKTLTLLSLI 269
GGI ADDMGLGKTLT +++I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust.
Identities = 250/724 (34%), Positives = 387/724 (53%), Gaps = 93/724 (12%)
Query: 187 MEAMEPPKEVIKSELFVHQKEGLGWLVRREN-------SEELPPFWE------EKGGG-F 232
+E ME P + L +QK+ L W+ E +E L P WE E+ +
Sbjct: 603 LEEMEAPS-TLTCNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIY 661
Query: 233 VNVLTNYHTDKRP---EPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDL 289
+N+ + T + P + RGGI AD MGLGKT+ ++LI PG
Sbjct: 662 LNIFSGEATIQFPTATQMARGGILADAMGLGKTVMTIALIL------ARPGRGNP----- 710
Query: 290 NEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGK 349
E ED ++ ++ KR R ++ H + T VK K
Sbjct: 711 -ENEDVLVADVNADKRNRKEI----------HMALTT-----VKAKGG------------ 742
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTL-- 406
TLI+CP ++ S W +LE H+ P + +YYG DRT D + + +D+VLTTY L
Sbjct: 743 --TLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTS 800
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
A ++ S +I+W+R++LDEAH IK+ Q ++ L++ RW +TGTP+QN D
Sbjct: 801 AYKQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLED 860
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKG------ 520
L+SL+ FL EP+ ++W LIQ+P G+ +GL ++ ++ + LRRTK+
Sbjct: 861 LYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSL 920
Query: 521 LIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQ 580
++ L P ++ E S ER Y L ++K ++ G ++ NY+ +L +LLRLRQ
Sbjct: 921 ILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQ 980
Query: 581 ICTN--LALCPSDVRSIIPSNTIED--VSNNPD----------LLKKLVEVLQDGEDFDC 626
C + L + +D + +++ + NNPD ++++++ L+DG +C
Sbjct: 981 CCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKEC 1040
Query: 627 PICISPPSDIIITCCAHIFCRSCILKTLQHTKPC--CPLCRHPLLQSDLFSSPPESSDMD 684
PIC+ D ++T CAH CR C+L T + C CP+CR L +++L S P +D
Sbjct: 1041 PICLESADDPVLTPCAHRMCRECLL-TSWRSPSCGLCPICRTILKRTELISCP---TDSI 1096
Query: 685 IAGKTLKNFT-SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLR 743
+KN+ SSKVS LL L +++ KS+VFSQ+ L LLE PL+ GF+ LR
Sbjct: 1097 FRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLR 1156
Query: 744 LDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEE 803
DG + K R +V++EF T+LL SLKA G G+NLTAAS VFL++PWWNPAVEE
Sbjct: 1157 FDGKLAQKGREKVLKEFNETKQK--TILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEE 1214
Query: 804 QAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDL 863
QA+ R+HRIGQK V + R IV++++EER+ ++Q RK+++ A ++ R ++L
Sbjct: 1215 QAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGAL--TDEEVRSARLEEL 1272
Query: 864 RILM 867
++L
Sbjct: 1273 KMLF 1276
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 2 OS=Arabidopsis
thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/745 (34%), Positives = 390/745 (52%), Gaps = 101/745 (13%)
Query: 181 VKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRREN-------SEELPPFWEEKGGG-- 231
V + ++ ME P ++ EL +QK+ L W+ + E + L P WE
Sbjct: 329 VGDSSGLKEMETPHTLL-CELRPYQKQALHWMTQLEKGNCTDEAATMLHPCWEAYCLADK 387
Query: 232 -----FVNVLTNYHTDKRPEPL---RGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTG 283
++N T T P L RGGI AD MGLGKT+ +SL+ + G
Sbjct: 388 RELVVYLNSFTGDATIHFPSTLQMARGGILADAMGLGKTVMTISLLLAHSWKAASTGFLC 447
Query: 284 TNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDD----NVKG-KSVG 338
N + K +++ +DD VK K +G
Sbjct: 448 PNY--------------------------------EGDKVISSSVDDLTSPPVKATKFLG 475
Query: 339 M---LNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELK 394
L + S + LIVCP ++ W T++E H PG L Y++YG R +D + L
Sbjct: 476 FDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLS 535
Query: 395 MYDLVLTTYSTLAIEESWLESP----VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAK 450
D+V+TTY L E S S + + W+R++LDEAH IKN+ +Q S L A
Sbjct: 536 QSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVAD 595
Query: 451 RRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMST 510
RRW +TGTPIQN DL+SL+ FL+ EP+ ++W L+Q+P +G+ +GL +Q ++
Sbjct: 596 RRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKP 655
Query: 511 ISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSL 564
I LRRTK + ++ L P Y ELS ER YD L ++K ++ G +
Sbjct: 656 IMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKV 715
Query: 565 MRNYSTVLSILLRLRQICTN--LALCPSDVRSIIPSNTI----------------EDVSN 606
+ NY+++L +LLRLRQ C + L + D N + +DV +
Sbjct: 716 LHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPS 775
Query: 607 NPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQH-TKPCCPLCR 665
++++VE L+ GE +CPIC+ D ++T CAH CR C+L + ++ T CP+CR
Sbjct: 776 EA-FVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCR 834
Query: 666 HPLLQSDLFSSPPESS-DMDIAGKTLKNFT-SSKVSALLTLLLQLRDKKPTTKSVVFSQF 723
+ + + +L ++P ES +D+ KN+ SSK++ALL L LR +KS++FSQ+
Sbjct: 835 NTVSKQELITAPTESRFQVDVE----KNWVESSKITALLEELEGLRSSG--SKSILFSQW 888
Query: 724 RKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVN 783
L LL+ PL F +RLDG+++ ++R +V++EF G VLL SLKA G G+N
Sbjct: 889 TAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSE--DGSILVLLMSLKAGGVGIN 946
Query: 784 LTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKL 843
LTAAS F+++PWWNPAVEEQA+ R+HRIGQ ++VKI R IV+ ++EER+ +Q RK+++
Sbjct: 947 LTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRM 1006
Query: 844 AREAFRRKGKDQREVSTDDLRILMS 868
A ++ R ++L++L +
Sbjct: 1007 ISGAL--TDQEVRSARIEELKMLFT 1029
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 243/769 (31%), Positives = 382/769 (49%), Gaps = 137/769 (17%)
Query: 193 PKEVIKSELFVHQKEGLGWLVRRENSEE------LPPFWEEKGGGFVNVLTN-------- 238
P + L +QK+ L W++ +E E+ + P WE+ +V N
Sbjct: 430 PADTFAMTLRKYQKQALHWMMAKEKDEKSHREPLMHPLWEQYEWPLKDVDENDLPQIEGQ 489
Query: 239 -------YHTD------KRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTN 285
Y D + + GGI AD+MGLGKT+ +LSL+
Sbjct: 490 SKFYVNPYSGDLSLDFPVQEQHCLGGILADEMGLGKTIQMLSLV---------------- 533
Query: 286 SLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSS 345
R + + S + + T++ GK N S
Sbjct: 534 ----------------HTHRSEVALEARQSVVARSNVNQLTRL-----GK-----NSESI 567
Query: 346 FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-RTQDVEEL-------KMYD 397
TL+V P S+ S W ++ E+ + G +KT +YYG+ ++ +++ L D
Sbjct: 568 LDAPCTTLVVAPMSLLSQWQSEAEKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPD 627
Query: 398 LVLTTYSTLAIEESWL---------ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLN 448
LV+T+Y + E S L + + + ++R+I+DEAH IKN +++ S+ ++
Sbjct: 628 LVITSYGVVLSEFSSLAARNGDKSFHNGLFSLRFFRIIIDEAHHIKNRSSKTSKACYEIS 687
Query: 449 AKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN-RKGLSRLQVL 507
A RW +TGTPI N DLFSL+ FL EP++ S+W++ I P G+ + L +Q +
Sbjct: 688 ATHRWALTGTPIVNKLEDLFSLVRFLGVEPWNNFSFWRTFITVPFESGDFMRALDVVQTV 747
Query: 508 MSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINA 561
+ + LRRTKD + L+ L PK IE VELS ER +Y+ + KAK + A
Sbjct: 748 LEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVNVELSETERDVYNYIFNKAKRTFSQNVEA 807
Query: 562 GSLMRNYSTVLSILLRLRQICTNLALCPS------------------------DVRSIIP 597
G++M+ ++T+ + +LRLRQ C + L + D+ S+I
Sbjct: 808 GTVMKAFTTIFAQILRLRQSCCHPILVRNRDIVADEVEAGAAADAAAGLADDMDLESLIT 867
Query: 598 SNT-IEDVSN---NPDLLKKLVEVLQDGEDFDCPICISPP-SDIIITCCAHIFCRSCILK 652
S T + D ++ N +E ++D + +CP+C P +D +T C H C+ C+L
Sbjct: 868 SFTAVTDKASKESNQTFGAHALEQIRDEAENECPLCFEEPMNDQTVTGCWHSACKKCLLD 927
Query: 653 TLQHTK-----PCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLK--------NFTSSKVS 699
++H P C CR P+ + DLF D D+ K + N +S+KV
Sbjct: 928 YIKHQTDKAEVPRCFSCREPINKRDLFEVVRHDDDSDMMSKKPRISLQRVGVNASSAKVV 987
Query: 700 ALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEE 759
AL++ L LR + P KSVVFSQF L L+E L A K LRLDGSM K RA V+ E
Sbjct: 988 ALMSELRALRREHPKMKSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNE 1047
Query: 760 FGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVK 819
F G T+LL SL+A G G+NLT+A RVF+++PWW+ AVE QA+DRVHR+GQ+ +V+
Sbjct: 1048 FTEKK--GFTILLLSLRAGGVGLNLTSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQ 1105
Query: 820 IVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
+ R +V+ S+EER+L++Q+RKK +A ++++ +D++ L+S
Sbjct: 1106 VKRFVVKESVEERMLKVQERKKFIATSLGMMNDEEKKLQRIEDIKELLS 1154
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2
Length = 1245
Score = 323 bits (828), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 247/811 (30%), Positives = 377/811 (46%), Gaps = 194/811 (23%)
Query: 188 EAMEPPKEVIKSELFVHQKEGLGWLVRRENSEE------LPPFWEE-------------- 227
EA PP V+ L +Q++ L W++ +E ++ + P WEE
Sbjct: 472 EAQPPPSFVLN--LRKYQRQALHWMLAKEKDKKSGRELSMHPLWEEYTWPTKDVDDKDLP 529
Query: 228 ----KGGGFVNVLTNYHTDKRP---EPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
+ +VN + + P + GGI AD+MGLGKT+ +LSLI + V+P
Sbjct: 530 AVEGQAHFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLIHSHR--NVSPS 587
Query: 281 LTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGML 340
G +S +T++ V M
Sbjct: 588 RQGPSS--------------------------------------STEL--------VRMP 601
Query: 341 NKSSSFM-GKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEEL----- 393
+ SS+ + TL+V P S+ S W ++ + + G +K MYYG D++ +++EL
Sbjct: 602 SSSSAILPAPNTTLVVAPTSLLSQWESEAMKASEQGTMKVLMYYGVDKSTNLQELCSAGN 661
Query: 394 --------KMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVT 445
Y +VL+ LA+ S + + ++++RVILDEAHVIKN ++ +R
Sbjct: 662 PAAPNIIITSYGVVLSESRQLAMFNSNTQGGLFSVDFFRVILDEAHVIKNRRSKTARACY 721
Query: 446 NLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNR-KGLSRL 504
L A RWV+TGTPI N DLFSL+ FLQ EP++ S+W++ I P + + L+ +
Sbjct: 722 ELRATHRWVLTGTPIVNRLEDLFSLVRFLQVEPWNNFSFWKTFITVPFESKDYVRALNVV 781
Query: 505 QVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDY 558
Q ++ + LRRTK + L+ L +TI+ VELS +ER++YD + +AK D
Sbjct: 782 QTVLEPLVLRRTKTMKTPEGEPLVPLPRRTIDIVEVELSEQEREIYDYIFTRAKRTFNDN 841
Query: 559 INAGSLMRNYSTVLSILLRLRQICTNLALCPS------------------------DVRS 594
I AG+L++++ST+ + +LRLRQ C + L + D++
Sbjct: 842 IEAGTLLKSFSTIFAQILRLRQTCCHPILTRNKTIVADEEDAAATADAANELKDDMDLQE 901
Query: 595 IIP--------SNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPS-DIIITCCAHIF 645
+I ++T E + + +Q +CPIC P D +T C H
Sbjct: 902 LIDRFSASMENADTAEAQDPSAKFTTHALRQIQTESSGECPICSEEPMIDPAVTACWHSA 961
Query: 646 CRSCILKTLQH-----TKPCCPLCRHPL------------------LQSDLFSSPPESSD 682
C+ C+ ++H P C CR P+ ++DL+SS P SS
Sbjct: 962 CKKCLEDYIRHQTDKGVPPRCFSCRAPVTSRDIFQVIRHQSPSSTPTETDLYSSTPASSP 1021
Query: 683 MDIAGKTLKNF--------TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPL 734
+L+ TS+K+ AL+ L ++ TKSVVFSQF L L+ L
Sbjct: 1022 HPAPRISLRRIHPLSPSAHTSAKIHALINHLNRV---PANTKSVVFSQFTSFLDLIGAQL 1078
Query: 735 QAAGFKLLRLDGSMNAKKRAQVIEEFG----------------------------NPGPG 766
AG +RLDG+M K RA+V+ EF P
Sbjct: 1079 TKAGISYVRLDGTMPQKARAEVLAEFNRTETFHQEEIDEDEGPDTPRVRISSKNSRSSPK 1138
Query: 767 GPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826
P VLL SL+A G G+NLTAAS VF+++PWW+ A+E QA+DRVHR+GQ DV + R IV+
Sbjct: 1139 SPAVLLISLRAGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQLRDVSVTRFIVK 1198
Query: 827 NSIEERILELQDRKKKLAREAFRRKGKDQRE 857
+SIE R+L +Q+RK +A R G D E
Sbjct: 1199 DSIEGRMLRVQERKMNIAGSLGLRVGGDGSE 1229
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 321 bits (823), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 261/924 (28%), Positives = 444/924 (48%), Gaps = 176/924 (19%)
Query: 64 SNAVKVLNTRTD-QVGHIERSVAAVLAPLID-SGMILVEGIVPNTRSKGNRFKIPCQVHI 121
S+ V++++T D ++G + VA +L PL+D S + +E + + G RF + ++I
Sbjct: 224 SHLVRLIDTSQDRELGRMPEDVARILYPLLDYSEQVSLEPYL--LINNGKRFSVGDNIYI 281
Query: 122 ----------FTRLEMFSIV-KDVILEGGL---QLISGNDVSFGLSEAMVVKERKG---- 163
F R+E SI+ K I + G+ QL + L +A+ ++ G
Sbjct: 282 RIDCYLTSQAFVRIEGGSILNKSFINDHGMDTRQLHRAGAI-MALFDAINIQPVYGDTKN 340
Query: 164 -------ERGVKSV---DEI--------FKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQ 205
E V S DE F + ++ + P + + K +L +Q
Sbjct: 341 EMIPNYQENTVSSSQFQDEALNINQLKSFYRITQSAASLQNLPETTPDESLFKLQLRRYQ 400
Query: 206 KEGLGWLVRRE-------------------------------NSEELPPFWEEKGGGFVN 234
K+ L W+++RE NS++ P E+ + N
Sbjct: 401 KQSLSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFRWPSNSKQGTPNHEDDCFFYAN 460
Query: 235 VLTNYHTDKRP---EPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNE 291
+ T + ++P + GGI AD+MGLGKT++ L+LI T S D
Sbjct: 461 LYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALIC-------------TASYD--- 504
Query: 292 VEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKI 351
E E S+KK +MS++ + +H +K ++ +
Sbjct: 505 -EAHEKKIESTKKPSMKEMSSQVDSSPLRHSQ-----------------HKHDTY-AYRT 545
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDL-------VLTTYS 404
TLIV P S+ + W ++ E+ + +YYG+ ++++L+ Y L ++TTY
Sbjct: 546 TLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN---NIKDLRAYVLGPNAPSVIITTYG 602
Query: 405 TLAIEESWLE-SPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNG 463
+ E S + + ++R+ILDE H I+N + + S+ V L + R+W++TGTPI N
Sbjct: 603 IIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINR 662
Query: 464 SFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNR-KGLSRLQVLMSTISLRRTKD---- 518
DLFSL+ FL EP+S +YW+ + P +GN + + ++ + LRRTK+
Sbjct: 663 LDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDV 722
Query: 519 --KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K L+ L PK + ++LS E+++Y + A+ V++ + G L++NY+ +L +L
Sbjct: 723 DGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHIL 782
Query: 577 RLRQICTNLAL-----------------CPSDVRSIIPSNTIED--VSNNPDLLKKLVEV 617
RLRQ+C +L L ++ SI+ I+ S + D L L
Sbjct: 783 RLRQVCCHLDLLKKTPDLGDPDLEDLENSTQNISSILMPKNIKSPKSSISQDKLDALSAN 842
Query: 618 LQDGE-------DFDCPI----CISPPSDIIITCCAHIFCRSCILKTL--QHTKPC---C 661
+D F+C I CI P S + IT C H FC C+ + + Q K C
Sbjct: 843 FRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINC 902
Query: 662 PLCRHPLLQSDLFSSPPESSDMDIAGKTL---KNFTSSKVSALLTLLLQLRDKKPTTKSV 718
P CR P+ ++++ E D + + + +F S+K+ ALL L Q+++ P + +
Sbjct: 903 PYCRMPISEANVLKL-KEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQII 961
Query: 719 VFSQFRKMLILLEEPLQAA----GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
VFSQF L +LE L++ + + DG ++ K+R +++E+F + +LL S
Sbjct: 962 VFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHDKDLSCIKLLLLS 1021
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
LK G G+NLT ASR F+++PWW+P +E+QA+DR+HRIGQ++ VK+VR I+ NS+EE++L
Sbjct: 1022 LKTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKML 1081
Query: 835 ELQDRKKKL-----AREAFRRKGK 853
+Q+RK+ L EA RR+ +
Sbjct: 1082 RIQERKRMLGDIVEGDEAERRQKR 1105
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 236/775 (30%), Positives = 377/775 (48%), Gaps = 144/775 (18%)
Query: 193 PKEVIKSELFVHQKEGLGWLVRRENSEE-------LPPFWEE------------------ 227
P L +QK+ L W++ +E ++ + P WEE
Sbjct: 491 PANTFAMTLRPYQKQSLYWMLAKEKNQRTEDRETSMHPLWEEYVWPTKDHDDKDLPVVPD 550
Query: 228 KGGGFVNVLT---NYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGT 284
+ +VN + + K+ + GGI AD+MGLGKT+ +LSLI +
Sbjct: 551 QPCFYVNPYSGDLSLDFPKQEQHCLGGILADEMGLGKTIQMLSLIHSHR----------- 599
Query: 285 NSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSS 344
S + K R+ G S R T +D
Sbjct: 600 -------------SEVAIKAREAGPTSVNNLPRLPTVSGQKTTID--------------- 631
Query: 345 SFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMY-------- 396
TL+V P S+ + W ++ E + G KT MYYG ++V+ + M
Sbjct: 632 ---APCTTLVVAPMSLLAQWQSEAENASKEGTFKTMMYYGAE-KNVDLVTMCCEANAANA 687
Query: 397 -DLVLTTYSTLAIEESWLESP---------VKKIEWWRVILDEAHVIKNANAQQSRTVTN 446
D+++T+Y + E + L + + + ++RVILDEAH IKN A+ SR
Sbjct: 688 PDVIITSYGVVLSEFTQLATKNGDRLSSRGLFSLNFFRVILDEAHNIKNRQAKTSRACYE 747
Query: 447 LNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNR-KGLSRLQ 505
+ A+ RWV+TGTPI N DLFSL+ FL+ EP++ S+W++ I P N + L +Q
Sbjct: 748 IAAEHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWRTFITVPFESKNFVRALDVVQ 807
Query: 506 VLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYI 559
++ + +RRTKD + L+ L PK IE +ELS ER +YD + +AK + D +
Sbjct: 808 TVLEPLVMRRTKDMKTPDGQFLVPLPPKHIEIVDIELSEPERAVYDYVFNRAKRTLFDNM 867
Query: 560 NAGSLMRNYSTVLSILLRLRQICTNLALCPS------------------------DVRSI 595
AG++M+ ++++ + +LRLRQ C + L + D++++
Sbjct: 868 QAGTVMKAFTSIFAQILRLRQSCCHPVLVRNQEILADEEEANMAADVAAGLADDMDLQTL 927
Query: 596 IP--SNTIEDVS-NNPDLLKKLVEVLQDGEDFDCPICISPPS-DIIITCCAHIFCRSCIL 651
I + T +D S N + ++ ++D +CPIC P D +T C H C+ C+L
Sbjct: 928 IERFTATTDDASKTNNNFGAHVLRQIRDEAVNECPICAEEPMIDQAVTGCWHSACKKCLL 987
Query: 652 KTLQHTK-----PCCPLCRHPLLQSDLF------------SSPPESSDMDIAGKTL-KNF 693
++H P C CR + D+F S+P S + I+ + + N
Sbjct: 988 DYIKHQTDRNEVPRCFQCREHINIRDIFEVIRHDDDLETSSTPGASPEPRISLQRVGAND 1047
Query: 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKR 753
+S+K+ AL++ L LR + P KS+V SQF L L+ L LRLDGSM+ K R
Sbjct: 1048 SSAKIVALISHLRTLRQEHPKMKSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKAR 1107
Query: 754 AQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIG 813
A V+ EF + VLL SLKA G G+NLT+A RV++++PWW+ AVE QA+DRVHR+G
Sbjct: 1108 AAVLTEFQSTNKF--CVLLLSLKAGGVGLNLTSAKRVYMMDPWWSFAVEAQAIDRVHRMG 1165
Query: 814 QKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
Q+++V++ R IV+ S+E R+L +Q+RKK +A ++++ +D++ L+S
Sbjct: 1166 QEDEVRVYRFIVKQSVEMRMLRVQERKKFIATSLGMMSDEEKKMQRIEDIKELLS 1220
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 316 bits (809), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 244/823 (29%), Positives = 396/823 (48%), Gaps = 145/823 (17%)
Query: 160 ERKGERGVKSVDEIFKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRREN-- 217
E+ E+ + +D I++ K + +++ M+PP + + L +QK+ L W+ RE
Sbjct: 398 EKLDEKQMNEIDSIYR---KAQQGDTRLDEMDPPSTFLYT-LRPYQKQALTWMNAREKGD 453
Query: 218 ----SEELPPFWEEK-------GGGFVNVLTNYHTDKRPEPLR----------------- 249
+E L P WEE G + + + D++P+ R
Sbjct: 454 SSVRNESLHPLWEEYLFKKDQLPGEPIEISDD---DEQPDSTRKFYWNPYSGELSLKFPT 510
Query: 250 ------GGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSK 303
GGI AD MG+GKT + SLI ++ A L + + D E E +E AS
Sbjct: 511 SQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLE-SQTRDGVEGEIDEEPASKRI 569
Query: 304 KRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFST 363
K K+ +SN+ A V K SF + TL+VCP S+ +
Sbjct: 570 KFKQVTLSNQWRA--------------------VPTAPKVESF--PRATLVVCPVSLAAQ 607
Query: 364 WITQLEEHTVPGMLKTYMYYGDRTQDVEEL------KMYDLVLTTYSTLAIE-ESWLES- 415
W +L + + G + +Y++YG D+E L + D+++T+Y TL E + WL +
Sbjct: 608 WHDELRKMSQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKWLRTK 667
Query: 416 --------PVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDL 467
+ E+ R++LDEAH I+N A S+ L +RRW +TGTPI N DL
Sbjct: 668 DRPNYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDL 727
Query: 468 FSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTK---DKG---L 521
+SL+ FL+ P+ S+++S + P + K L+ +Q ++ + LRR K DK +
Sbjct: 728 YSLLHFLRITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLI 787
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQI 581
+ L PKT+E ++ S ER++Y LE +AK D G M NY+++L++L++LRQ
Sbjct: 788 VDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFIDLDADGRAMSNYTSILAMLMKLRQC 847
Query: 582 CTN--LALCPSDVRSIIPSNTIEDVSNNPD-LLKKLVEVLQDG------EDFD------- 625
+ L L S + +E + N + L+ ++ + G ED D
Sbjct: 848 VDHPLLVLGKSGEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPEDVDKAYAAKV 907
Query: 626 ------------CPICISPPSDIIITCCAHIFCRSCILKTL-----QHTKPCCPLC-RHP 667
C +C + D ++ C H C+ CI++ + Q+ CP C + P
Sbjct: 908 LKELGEQEDTPICELCSNEMFDEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGP 967
Query: 668 LLQSDLFS--------SP-------------PESSDMDIAGKTLKNFTSSKVSALLTLLL 706
+ +DL S +P S+D + + TS+K+ ALL L
Sbjct: 968 IKLADLRSVQRRHKRVNPITDAYPGGRDPNLKSSNDTTVTLGKVDLVTSTKLRALLRQLE 1027
Query: 707 QLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPG 766
++R + P K++VFSQF L L+E L G + LR DG+M+ +RA IEEFG
Sbjct: 1028 EIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRK-TN 1086
Query: 767 GPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826
P +LL SLKA G G+NLT A+ VFL++ WWN A+E+QA+DRVHR+GQ + V + R I++
Sbjct: 1087 EPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIK 1146
Query: 827 NSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
++E+RI+++Q K L + G +E + D++ + +
Sbjct: 1147 GTVEKRIMKIQRSKTALVNASL-SNGAKTKETTLADIKKIFGM 1188
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 315 bits (808), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 245/815 (30%), Positives = 393/815 (48%), Gaps = 142/815 (17%)
Query: 168 KSVDEIFKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRREN------SEEL 221
K ++EI + K + +++ M+PP + + L +QK+ L W+ RE +E L
Sbjct: 403 KQMNEIDSIYRKAQQGDTRLDEMDPPSTFLYT-LRPYQKQALTWMNAREKGDSSVRNESL 461
Query: 222 PPFWEEK-------GGGFVNVLTNYHTDKRPEPLR-----------------------GG 251
P WEE G + + + D++P+ R GG
Sbjct: 462 HPLWEEYLFKKDQLPGEPIEISDD---DEQPDSTRKFYWNPYSGELSLKFPTSQNLSRGG 518
Query: 252 IFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMS 311
I AD MG+GKT + SLI ++ A L + + D E E +E AS K K+ +S
Sbjct: 519 ILADAMGMGKTCMMASLIHTNREEKPAGNLE-SQTRDGVEGEIDEEPASKRIKFKQVTLS 577
Query: 312 NKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEH 371
N+ A V K SF + TL+VCP S+ + W +L +
Sbjct: 578 NQWRA--------------------VPTAPKVESF--PRATLVVCPVSLAAQWHDELRKM 615
Query: 372 TVPGMLKTYMYYGDRTQDVEEL------KMYDLVLTTYSTLAIE-ESWLES--------- 415
+ G + +Y++YG D+E L + D+++T+Y TL E + WL +
Sbjct: 616 SQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKWLRTKDRPNYEGG 675
Query: 416 PVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQ 475
+ E+ R++LDEAH I+N A S+ L +RRW +TGTPI N DL+SL+ FL+
Sbjct: 676 SLYDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLR 735
Query: 476 FEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTK---DKG---LIGLQPKTI 529
P+ S+++S + P + K L+ +Q ++ + LRR K DK ++ L PKT+
Sbjct: 736 ITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPKTV 795
Query: 530 EKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN--LAL 587
E ++ S ER++Y LE +AK + G M NY+++L++L++LRQ + L L
Sbjct: 796 EIKVLQFSRAERQIYKFLEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLLVL 855
Query: 588 CPSDVRSIIPSNTIEDVSNN--------------------PDLLKK--LVEVLQD-GEDF 624
S + +E + N PD + K +VL++ GE
Sbjct: 856 GKSGEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVLKELGEQE 915
Query: 625 DCPI---CISPPSDIIITCCAHIFCRSCILKTL-----QHTKPCCPLC-RHPLLQSDLFS 675
D PI C + D ++ C H C+ CI++ + Q+ CP C + P+ +DL S
Sbjct: 916 DTPICELCSNEMFDEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRS 975
Query: 676 ---------------------SPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPT 714
+ S+D + + TS+K+ ALL L ++R + P
Sbjct: 976 VQRRHKRVNPITDAYPGGRDPNSKSSNDTTVTLGKVDLVTSTKLRALLRQLEEIRQEDPK 1035
Query: 715 TKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
K++VFSQF L L+E L G + LR DG+M+ +RA IEEFG P +LL S
Sbjct: 1036 AKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRK-TNEPLILLIS 1094
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
LKA G G+NLT A+ VFL++ WWN A+E+QA+DRVHR+GQ + V + R I++ ++E+RI+
Sbjct: 1095 LKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIM 1154
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
++Q K L + G +E + D++ + +
Sbjct: 1155 KIQRSKTALVNASL-SNGAKTKETTLADIKKIFGM 1188
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1
Length = 1151
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 234/786 (29%), Positives = 373/786 (47%), Gaps = 155/786 (19%)
Query: 192 PPKEVIKSELFVHQKEGLGWLVRRE----------NSEE----LPPFWEE---------- 227
PP E++K EL +QK+GL W++RRE SE+ L P W +
Sbjct: 409 PPPELVKVELRKYQKQGLTWMLRREGISIGHDNEDKSEDDTTLLNPLWRQFQWPRNMSWH 468
Query: 228 ----------KGGGFVNVLTNYHTDK----RP---EPLRGGIFADDMGLGKTLTLLSLIA 270
+ N HT + RP GGI +D+MGLGKT++ LSL+
Sbjct: 469 NQSTGSENDNSNPKLIFFYGNLHTGEFSLERPTMNSFKNGGILSDEMGLGKTISALSLVL 528
Query: 271 LDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDD 330
+ P T S L E +S+ DD
Sbjct: 529 M------RPKDEHTTSQSLFHQESSNLSS-----------------------------DD 553
Query: 331 NVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDV 390
++ K +S ++ K TLI+ P S+ + W + ++ L +YYG +
Sbjct: 554 VIEIKEP---ERSYAY---KTTLIIVPMSLLTQWRDEFDKVNNNAGLTCELYYGGNVSSL 607
Query: 391 EELKMY-----DLVLTTYSTLAIEESWLE------------SPVKKIEWWRVILDEAHVI 433
+ L + +VLTTY + E + L S + IE++R+ILDE H I
Sbjct: 608 KSLLIKRKNPPTVVLTTYGIVQNEWTKLSKDGTNIRSLGRTSGIFSIEFFRIILDEGHTI 667
Query: 434 KNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPL 493
+N + S+ V L++K RW++TGTPI N DL+SL+ FL+ EP+S YW+ I P
Sbjct: 668 RNKSTITSKAVLELSSKYRWILTGTPIINRLDDLYSLVKFLKLEPWSQIGYWKQFITNPF 727
Query: 494 AQGN-RKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDE 546
+ N ++ + +M + LRRTK L+ L PK I ++LS +++ +Y+E
Sbjct: 728 EERNFKQAFDVVNAIMEPVLLRRTKQMKDTDGNPLVQLPPKEIVIEKLQLSKKQKLIYEE 787
Query: 547 LEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPS---------------- 590
+A+ + + +G L++ YST+L +LRLRQ+C + L +
Sbjct: 788 FLQRAEKTFRSGLQSGDLLKKYSTILVHILRLRQVCCDSNLIGTLDENDEDLSSGNNKLI 847
Query: 591 ----DVRSIIPSNTIEDVSNNP---DLLKKLVEVLQ----DGEDF---DCPICISPP--- 633
DV+++IP E+ P D L KL+E ++ D +C IC + P
Sbjct: 848 TESVDVKTLIPDTEEEEDEVPPFENDELDKLIESVEAKFIDSNQLIPVECSICTAEPIES 907
Query: 634 SDIIITCCAHIFCRSCIL--------KTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDI 685
S ++T C H+FC+ C+ K+LQ CP CR + + + S +
Sbjct: 908 SSAVVTECEHVFCKECLEEYGNFQKEKSLQQK---CPNCRRDINLNRCLAFEKGSDGILK 964
Query: 686 AGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQ----AAGFKL 741
+ +K++AL+ L QL+D + VVFSQF L +LE L + K+
Sbjct: 965 LIHFDRKERPAKLNALIRHLQQLQDSSAGEQVVVFSQFSSYLDILESQLNEVYSSNKLKV 1024
Query: 742 LRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAV 801
+ DG ++ K+R V+E+F VLL SLKA G G+NLT AS F+++PWW+P++
Sbjct: 1025 YKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSM 1084
Query: 802 EEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTD 861
E+QA+DR+HRIGQ VK++R ++ SIEE++L +QDRK+ L EA ++R+ +
Sbjct: 1085 EDQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLRIQDRKRTLG-EAMDTDEDERRKRRIE 1143
Query: 862 DLRILM 867
++++L
Sbjct: 1144 EIQMLF 1149
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 306 bits (783), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 232/762 (30%), Positives = 353/762 (46%), Gaps = 152/762 (19%)
Query: 186 KMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSEE--------------LPPFWE----- 226
K+ PP + + EL +QK+GL W++ RE + P W
Sbjct: 350 KLRETTPPVDKFQLELRRYQKQGLTWMLLREREHAILEPGSQDALADGPMDPMWRMFKWP 409
Query: 227 -------EKGGGFVNV--------LTNYHTDK----RP---EPLRGGIFADDMGLGKTLT 264
+G +V++ N HT + +P L+GGI AD+MGLGKT++
Sbjct: 410 RDTSWDVSRGTTYVSLEADIPDKFYANLHTGEFSLVKPISKSILKGGILADEMGLGKTIS 469
Query: 265 LLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTV 324
+L+LI + P T + + ++ +K G +S + K T
Sbjct: 470 ILALITM------VPSDT------------KHLLTTAQEKPPVGHLSLELGISTVKPYTA 511
Query: 325 NTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG 384
+T TLIV P S+ W + L +YY
Sbjct: 512 ST-------------------------TLIVVPMSLLPQWRNEFVRVNDGNGLYCEVYYA 546
Query: 385 D-----RTQDVEELKMYDLVLTTYSTLAIEESWLES--------PVKKIEWWRVILDEAH 431
RT V++ +VLTTY + E S L+ + +E++R+ILDE H
Sbjct: 547 GNVSNLRTLLVKQKSPPSVVLTTYGVVQTEWSKLQQFDYEASNEGLFSVEFFRIILDEGH 606
Query: 432 VIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQR 491
I+N + S+ V L ++R+WV+TGTPI N DLFSL+ F+ FEP+ YW+ +
Sbjct: 607 NIRNRTTKTSKAVMALTSRRKWVLTGTPIMNRLDDLFSLIKFMNFEPWCKIDYWRQFVSD 666
Query: 492 PLAQGN-RKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLY 544
P + + L +Q +M I LRRTK+ L+ L PK + + S E LY
Sbjct: 667 PFEKKDYSSALEVIQAVMGPILLRRTKNMKDEDGNPLVQLPPKEVVIEMIRFSDTEAGLY 726
Query: 545 DELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPS------DVRSIIPS 598
KA+ V++ + G L++ YST+L +LRLRQ+C + L S D++++
Sbjct: 727 KYFLSKAEHSVKESLARGDLLKKYSTILLHILRLRQVCCHFKLLGSQDENDEDLKNMKLI 786
Query: 599 NTIEDVSN---------------NPDLLKKLVEVLQDGE---DFDCPIC----ISPPSDI 636
N I D+S PD ++ + + D +C IC ISP + +
Sbjct: 787 NDIPDISTLLGEDSQSPGSSSEGMPDFIEDFKTKYPNSDALKDLECSICTCEAISPLTSV 846
Query: 637 IITCCAHIFCRSCILKTLQH-----TKPCCPLCRHPLLQSDLFSSPPESSDMDIAGK--- 688
+ T C H FC SC+L+ +Q ++ CP CR + L DI GK
Sbjct: 847 VFTRCGHPFCESCLLEYIQFQNKKGSETICPNCRAAVESRYLLKLE------DINGKLEP 900
Query: 689 --TLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAG----FKLL 742
SSK+ AL+ L L+D + VVFSQF L +LE L+ + ++
Sbjct: 901 VPYSNTKKSSKIVALIRHLKHLQDTSANEQVVVFSQFSSYLDILENELRQSFASDICEIY 960
Query: 743 RLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVE 802
+ DG ++ K+R+ V+ +F VLL SLKA G G+NLT AS F+++PWW+P +E
Sbjct: 961 KFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGME 1020
Query: 803 EQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLA 844
+QAMDR+HRIGQ VKI R IV NSIEE++L +Q++K+ L
Sbjct: 1021 DQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSLG 1062
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 299 bits (766), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 222/732 (30%), Positives = 363/732 (49%), Gaps = 97/732 (13%)
Query: 188 EAMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEP 247
E PPKE +L +QK GL W++ RE K + +L+N DK
Sbjct: 351 ETTTPPKENFALDLRSYQKHGLSWMLARE-----------KELDVLEMLSN--EDKLSSQ 397
Query: 248 LRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSS--KKR 305
R + +++G L A P T + + E+S K
Sbjct: 398 SRKEL--ENLGTMNPLWRKYKWPYATEATQDPTQNQTEKYFYANMYNGELSLEKPVIKSS 455
Query: 306 KRGKMSNKGSARGKKHKT---VNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFS 362
RG + GK T VN+ DN KS + TLIV P S+
Sbjct: 456 LRGGILADEMGLGKTIATLALVNSVPYDNFPEP------KSDRPYASQTTLIVVPMSLLF 509
Query: 363 TWITQLEEHTVPGMLKTYMYYGDRTQ--------DVEELKMYDLVLTTYSTLAIEESWL- 413
W ++ E+ ++YG+ + + + K+ +++TTY T+ E + L
Sbjct: 510 QWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLCNPDNSKIPIVMITTYGTVLNEFTRLS 569
Query: 414 -------ESP---VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNG 463
E P + ++++R+ILDE H I+N N + +++V L + R+W++TGTPI N
Sbjct: 570 KRRNSKGELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNR 629
Query: 464 SFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN-RKGLSRLQVLMSTISLRRTKD---- 518
DL+SL FL+ +P++ SYW++ + P Q + L ++ ++ I LRRTK
Sbjct: 630 LDDLYSLTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQKKN 689
Query: 519 -KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLR 577
K L+ L K + ++ + +E KLY + +A + I +G L+R Y+ +L+ +LR
Sbjct: 690 GKPLVELPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILR 749
Query: 578 LRQICTNLALC---------------PSDVRSIIPS---NTIEDVSNNPDLLKKLVEVL- 618
LRQ+C ++ L D+R + S N I +N+ D+ +K+ +
Sbjct: 750 LRQVCCHVDLIGGAHEMDDEIIEAEQDEDMRKFLTSIKENQIR-FANDTDVKEKMYNLYG 808
Query: 619 QDGEDFDCPICIS---PPSDIIITCCAHIFCRSCILKTLQHTKPC-----CPLCRHPLLQ 670
+ E+ +C IC P S++++T CAH FC SCIL+ L K CP CR P+ +
Sbjct: 809 KIKEENECSICTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKLCPNCRSPISK 868
Query: 671 SDLF---SSPPESSDM------DIAGKTLK------NFTSSKVSALLTLLLQLRDKKPTT 715
LF + P + +++ D + + N +SSK+ AL+ L L + P +
Sbjct: 869 YQLFRIRNQPTKGNEIRFHTQKDAPDYSFQLYLYDPNRSSSKIQALVRHLKALHSQSPNS 928
Query: 716 KSVVFSQFRKMLILLEEPLQAAG--FKLLRLDGSMNAKKRAQVIEEFGNPGPGGP-TVLL 772
K +VFSQF L +++ L+ A F + + DG +N R +++E F P G +LL
Sbjct: 929 KVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMNDRTKLLESFNQPLEDGKVAILL 988
Query: 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEER 832
SLKA G G+NLT ASR ++++PWW+P++E+QA+DR+HRIGQ E VK+VR I+ NSIE +
Sbjct: 989 LSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVKVVRFIMENSIETK 1048
Query: 833 ILELQDRKKKLA 844
+L++Q+RKK++
Sbjct: 1049 MLKIQERKKQIG 1060
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 296 bits (757), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 202/618 (32%), Positives = 307/618 (49%), Gaps = 128/618 (20%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD-RTQDVEE-------------LKMYD 397
TL+V P S+ + W + + + G +K MYYG+ + ++ E L Y
Sbjct: 561 TLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSYG 620
Query: 398 LVLT---TYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
+V++ T+ LA SW + ++++RVILDEAH+IKN ++ +R +L A RWV
Sbjct: 621 VVMSEHRTHQALAPGTSWTPGNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWV 680
Query: 455 VTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPL-AQGNRKGLSRLQVLMSTISL 513
+TGTPI N DLFSL+ FL+ EP++ S+W++ I P ++ + +S +Q ++ + L
Sbjct: 681 LTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWKTFITAPFESKEVVRAISVVQTVLEPLVL 740
Query: 514 RRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRN 567
RRTK + L+ L +TI VEL +ER++Y+ + +AK + AG+L+++
Sbjct: 741 RRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKS 800
Query: 568 YSTVLSILLRLRQICT------NLALCPSDVRSIIPSNTIEDVSNNPD---LLKKLVEVL 618
YST+ + LLRLRQ C N A+ + + ++ D+ ++ D L+ +
Sbjct: 801 YSTIFAQLLRLRQTCCHPILTRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATT 860
Query: 619 QDGEDF------------------------DCPICISPPS-DIIITCCAHIFCRSCILKT 653
D E +CPIC P D +T C H C+ C+
Sbjct: 861 SDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDY 920
Query: 654 LQHTK-----PCCPLCRHPLLQSDLF---------SSPPESSDMDIAGKTLKN------- 692
+QH + P C CR L D+F ++P E + I G + +
Sbjct: 921 IQHQRDKGVQPRCFSCRADLNPQDIFEVVRYQSPNTTPTEQTPSSIGGDNVYSSSQPPPP 980
Query: 693 ---------------FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA 737
TS+K+ ALL L+++ TKSVVFSQF L L+ L A
Sbjct: 981 PRISLRRINPLSPSAHTSAKIHALLAHLVRV---PAGTKSVVFSQFTSFLDLIGPQLTKA 1037
Query: 738 GFKLLRLDGSMNAKKRAQVIEEFG----------------------NPGPGGP------- 768
G +RLDG+M K RA+V+ +F P P P
Sbjct: 1038 GISFVRLDGTMAQKARAEVLAQFTKFETFTQEELDQAESTSAPSGLTPTPKTPKQSSSPS 1097
Query: 769 --TVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826
TVLL SLKA G G+NLTAAS VF+++PWW+ A+E QA+DRVHR+GQ DV +VR IV+
Sbjct: 1098 SPTVLLISLKAGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQLRDVNVVRFIVK 1157
Query: 827 NSIEERILELQDRKKKLA 844
+SIEER+L +Q+RK +A
Sbjct: 1158 DSIEERMLRVQERKMGIA 1175
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 171 DEIFKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSEE------LPPF 224
D++ L K M +PP +L +QK+ L W++ +E ++ + P
Sbjct: 407 DQLDALYKKAQSFDFSMPEAQPPSS-FAMDLRKYQKQALYWMLSKEKDKKSGREVSIHPL 465
Query: 225 WEE----------KGGGFVNVLTNYHTDKRPEPLR-----------GGIFADDMGLGKTL 263
WEE K + + +++ + L GGI AD+MGLGKT+
Sbjct: 466 WEEYDWPLKDVDDKDLPIIEGINHFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTI 525
Query: 264 TLLSLI 269
+LSL+
Sbjct: 526 EMLSLV 531
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 296 bits (757), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 184/573 (32%), Positives = 314/573 (54%), Gaps = 60/573 (10%)
Query: 347 MGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYD-----LVL 400
+ + TL+V P S+ W ++ + + ++ +YYG ++ D++ + +++
Sbjct: 567 VASRTTLVVAPMSLLDQWHSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIII 626
Query: 401 TTYSTLAIEESW--LESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGT 458
T+Y L E S S + + W+RV+LDE H I+N ++ ++ +++++ RWV+TGT
Sbjct: 627 TSYGVLLSEFSQQSHSSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGT 686
Query: 459 PIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN-RKGLSRLQVLMSTISLRRTK 517
PI N DL+SL+ F+++EP+ +YWQ+ + P + K L+ +Q ++ + LRRTK
Sbjct: 687 PIVNKLDDLYSLIKFMRYEPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTK 746
Query: 518 D------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
+ ++ L PKT++ Y++ S ERK+YD L KAK V I AG+L RNY+T+
Sbjct: 747 ETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTKAKSTVNANIVAGTLFRNYTTI 806
Query: 572 LSILLRLRQICTNLALCPSDVRSIIPSNTIED----------------VSNNP---DLLK 612
L +LLRLRQ C + L + I S T +D V+ P D+LK
Sbjct: 807 LGLLLRLRQACCDPVLLSN---MTINSETFDDFEFSVEQFNSLINQFVVTGKPIPSDILK 863
Query: 613 KLVEVLQDGEDF--DCPICISPP-SDIIITCCAHIFCRSCILKTLQHTK------PCCPL 663
++ L+ E +CPIC + P + ++ C H C C+ + +Q+ K P C
Sbjct: 864 --IDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHT 921
Query: 664 CRHPLLQSDLF------SSPPESSDM---DIAGKTLKNFTSSKVSALLTLLLQLRDKKPT 714
CR P + D++ ++ +S+ + ++ K S K++ LL L QL
Sbjct: 922 CRQPFNEQDVYKPFFVKNNGTQSTLLVGEEVKWKYWNRLQSVKLNGLLGQLRQLTHSSEP 981
Query: 715 TKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774
K V+FSQF L ++ + L++ R DG+M+ + R+ +E F N VL+ S
Sbjct: 982 EKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDP--DVNVLIIS 1039
Query: 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERIL 834
LKA G G+NLT A+ VF+++PWW+ +VE QA+DR+HR+GQ++ V + R IVR+++EER+L
Sbjct: 1040 LKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERML 1099
Query: 835 ELQDRKKKLAREAFRRKGKDQREVSTDDLRILM 867
++Q+RK + +GK Q + S +D+++L
Sbjct: 1100 KIQERKNFITGTLGMSEGKQQVQ-SIEDIKMLF 1131
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 31/134 (23%)
Query: 171 DEIFKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRRE-------NSEELPP 223
D++ L DK VK P +L +QK+ L W+ +E ++ +L P
Sbjct: 416 DQLAILYDK-VKTSGAELPSAPKPSTFALDLREYQKQALYWMCCKEEGVQSDGSAPKLHP 474
Query: 224 FW--------------------EEKGGGFVNVLTNYHTDKRPEPL---RGGIFADDMGLG 260
W ++ +VN+ T T P + RGGI AD+MGLG
Sbjct: 475 LWSRFRFPKDSEFPEFFKCSSDDDNTHFYVNLYTGETTMLFPNSMPYHRGGILADEMGLG 534
Query: 261 KTLTLLSLIALDKC 274
KT+ +LSLI C
Sbjct: 535 KTIEVLSLIHSRPC 548
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 205/709 (28%), Positives = 353/709 (49%), Gaps = 147/709 (20%)
Query: 248 LRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKR 307
++GGI AD+MGLGKT+ S +AL NS+ ++ + +E
Sbjct: 537 VKGGILADEMGLGKTI---STLAL------------INSVPIDVMFEE------------ 569
Query: 308 GKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQ 367
N +++D + K TLI+ P S+ S W +
Sbjct: 570 -----------------NKELED-------------KTIYASKTTLIIVPMSLLSQWQKE 599
Query: 368 LEEHTVPGMLKTYMYYGDR-TQDVEEL---KMYDL---VLTTYSTLAIEESWLESP---- 416
++ K ++YYGD T D+ + K D+ ++TTY T+ E + + +
Sbjct: 600 FDKANNNSNHKCFIYYGDSATTDLSPVLCNKKKDIPIVMITTYGTVLNEFTRISNRRDAK 659
Query: 417 -------VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFS 469
+ ++++R++LDE H I+N A+ S+ + + + R+WV+TGTP+ N DL+S
Sbjct: 660 GFLPKIGLFSVKFFRIVLDEGHNIRNRTAKTSKAIYEILSNRKWVLTGTPVINRLDDLYS 719
Query: 470 LMAFLQFEPFSVKSYWQSLIQRPLAQGN-RKGLSRLQVLMSTISLRRTKD------KGLI 522
L+ FL+ EP+S SYW++ + P Q + L ++ ++ I +RRTK+ K L+
Sbjct: 720 LVKFLELEPWSNFSYWKTFVTLPFEQRKISQTLDVVKSILEPIFIRRTKNMKQSNGKPLV 779
Query: 523 GLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQIC 582
L PK + V+ + E KLY+ + +A +D I +G L + YS +L+ +LRLRQ+C
Sbjct: 780 ELPPKEVVIEEVKFNEVEEKLYNWFKARASQSFKDGIKSGDLFKKYSQILTHILRLRQVC 839
Query: 583 TNLALC----------------------PSDVRSII---------PSNTIEDVSNNPDLL 611
++ L SD S++ +N E NN ++
Sbjct: 840 CHVDLVGSANEMEQELVDPNTDLSEANGESDSISMVNNVLDSYHADNNHDEKFKNNTEVR 899
Query: 612 KKLVEVLQ--DGEDFDCPICISPP---SDIIITCCAHIFCRSCILKTL-----QHTKPCC 661
+ + + D ++ +C IC P ++ +T C H +C +C+L+ KP C
Sbjct: 900 SVMFPLYEKIDLKESECSICTQSPIPLGEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLC 959
Query: 662 PLCRHPLLQSDLFS-SPPESSDMDIAGKT-------LKNF-----------TSSKVSALL 702
P CR P+ + +F ++S +I T +NF TSSK+ L+
Sbjct: 960 PNCREPISKYKIFKLRHRDTSVKEIRFHTKQEMEDPSQNFKFQLYLYDPTKTSSKIQCLI 1019
Query: 703 TLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQ---AAGFKLLRLDGSMNAKKRAQVIEE 759
L L+++ P + VVFSQF L ++E L+ + F + + DG +N +R +++E
Sbjct: 1020 NHLKILKEQSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVYKFDGRLNMNERQKILEN 1079
Query: 760 FGNPGPGGPT-VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDV 818
F + +LL SLKA G G+NLT ASR F+++PWW+P+VE+QA+DR+HRIGQ +V
Sbjct: 1080 FSSQKHENKVMILLLSLKAGGVGLNLTTASRAFMMDPWWSPSVEDQAIDRLHRIGQNSNV 1139
Query: 819 KIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILM 867
K+ R I+ +SIE ++L++Q+RKK++ EA + ++R+ ++++IL
Sbjct: 1140 KVTRFIMADSIETKMLKIQERKKQIG-EAVGAEEDERRKRRIEEMQILF 1187
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 188/605 (31%), Positives = 306/605 (50%), Gaps = 100/605 (16%)
Query: 334 GKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEE 392
GK++ + + + K +L+V P W ++E+HT G LK Y+Y+G RT D+++
Sbjct: 215 GKTIQTIALLMNDLTKSPSLVVAPTVALMQWKNEIEQHT-KGQLKIYIYHGASRTTDIKD 273
Query: 393 LKMYDLVLTTYSTLAI-----------EESWLESP--VKKIEWWRVILDEAHVIKNANAQ 439
L+ YD+VLTTY+ L + + P + I+++RVILDEAH IK+ +
Sbjct: 274 LQGYDVVLTTYAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSN 333
Query: 440 QSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS------------------- 480
+R V NL ++RW ++GTP+QN +++SL+ FL PF+
Sbjct: 334 TARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDWKFTDR 393
Query: 481 ------------VKSYWQSLIQRPLAQGNRKG-----LSRLQVLMSTISLRRTKDKGL-- 521
+++ + + + + +G + +Q L+ I LRRTK +
Sbjct: 394 MHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLKNIMLRRTKVERADD 453
Query: 522 IGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQI 581
+GL P+ + + EE+ LY L +K ++ G ++ NY+ + +++ R+RQ+
Sbjct: 454 LGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQL 513
Query: 582 CTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFD---CPICISPPSDIII 638
+++PDL+ K + G+D C +C + I
Sbjct: 514 -----------------------ADHPDLVLKRLNNFP-GDDIGVVICQLCNDEAEEPIE 549
Query: 639 TCCAHIFCRSCILKTLQ-----HTKPCCPLCR--------HPLLQSDLFSSPPES--SDM 683
+ C H FCR CI + ++ + K CP+C P L+ DL S +S S +
Sbjct: 550 SKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQPALEVDLDSFKKQSIVSRL 609
Query: 684 DIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLR 743
+++GK +S+K+ AL+ L +LR K T KS+VFSQF ML L+E L+ AGF+ ++
Sbjct: 610 NMSGKWQ---SSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVK 666
Query: 744 LDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEE 803
L GSM+ +R + I+ F N V L SLKA G +NL AS+VF+L+PWWNP+VE
Sbjct: 667 LQGSMSPTQRDETIKYFMNNIQC--EVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEW 724
Query: 804 QAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDL 863
Q+ DRVHRIGQ VKI R + +SIE RI+ELQ++K + + ++ DL
Sbjct: 725 QSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATINQDEAAISRLTPADL 784
Query: 864 RILMS 868
+ L +
Sbjct: 785 QFLFN 789
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 276 bits (707), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 191/592 (32%), Positives = 294/592 (49%), Gaps = 106/592 (17%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDV--EELKMYDLVLTTY---- 403
K TL+V P W +++ HT L TY+YYG + +D+ EEL YD+VLT+Y
Sbjct: 302 KPTLVVAPVVAIMQWKEEIDTHTNKA-LSTYLYYG-QARDISGEELSSYDVVLTSYNVIE 359
Query: 404 STLAIEESWL---------ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
S E S +S + ++E++R+ILDEAH IK+ +R V L R+
Sbjct: 360 SVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKIC 419
Query: 455 VTGTPIQNGSFDLFSLMAFLQFEPF-------------------------------SVKS 483
++GTP+QN +LFSL+ FL+ +PF S
Sbjct: 420 LSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTC 479
Query: 484 YWQSLIQRPLAQGNRKG-----LSRLQVLMSTISLRRTKDKGL--IGLQPKTIEKYYVEL 536
Y+ + + +P+ + +G ++ L+ I LRRTK + +GL P+ +E
Sbjct: 480 YFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLF 539
Query: 537 SLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSII 596
+ EE +Y L +K Y+ G ++ NY+ + ++ R+RQ+
Sbjct: 540 NEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQM--------------- 584
Query: 597 PSNTIEDVSNNPDLL----KKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILK 652
+++PDL+ +K V++ ++ E+ C IC D I + C H FCR C+ +
Sbjct: 585 --------ADHPDLVLASKRKTVDI-ENQENIVCKICDEVAQDAIESRCHHTFCRLCVTE 635
Query: 653 TLQHT----KPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFT------------SS 696
+ CP C PL DL + E D + + KN + S+
Sbjct: 636 YINAAGDGENVNCPSCFIPL-SIDLSAPALE----DFSEEKFKNASILNRIDMNSWRSST 690
Query: 697 KVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQV 756
K+ AL+ L LR K T KS+VFSQF ML L+ L+ AGF ++LDG M K RA
Sbjct: 691 KIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAAT 750
Query: 757 IEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKE 816
IE F N T+ L SLKA G +NLT AS+VF+++PWWN AV+ QAMDR+HRIGQK
Sbjct: 751 IEAFSNDI--NITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKR 808
Query: 817 DVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMS 868
+K++ L + NSIE +I+ELQ++K ++ + K ++S +D++ L S
Sbjct: 809 PIKVITLCIENSIESKIIELQEKKAQMIHATIDQDEKALNQLSVEDMQFLFS 860
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 29/84 (34%)
Query: 186 KMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRP 245
+++ +E PKE++ + L Q+EG+ WL R+E+S
Sbjct: 241 EVKQIEQPKELVLN-LLPFQREGVYWLKRQEDSS-------------------------- 273
Query: 246 EPLRGGIFADDMGLGKTLTLLSLI 269
GGI AD+MG+GKT+ ++L+
Sbjct: 274 --FGGGILADEMGMGKTIQTIALL 295
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 226/792 (28%), Positives = 366/792 (46%), Gaps = 165/792 (20%)
Query: 191 EPPKEVIKSELFVHQKEGLGWLVRREN---------------SEELPPFWEEKG------ 229
EP ++V K EL +QK+GL W++RRE + + P W++
Sbjct: 427 EPSRDVFKLELRNYQKQGLTWMLRREQEFAKAASDGEASETGANMINPLWKQFKWPNDMS 486
Query: 230 -------GGFVNV------LTNYHTDK----RP---EPLRGGIFADDMGLGKTLTLLSLI 269
VNV N H+ + +P ++GGI +D+MGLGKT+ SL+
Sbjct: 487 WAAQNLQQDHVNVEDGIFFYANLHSGEFSLAKPILKTMIKGGILSDEMGLGKTVAAYSLV 546
Query: 270 ALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMD 329
C P + L ++E NT +
Sbjct: 547 L--SC----PHDSDVVDKKLFDIE-------------------------------NTAVS 569
Query: 330 DNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQL-EEHTVPGMLKTYMYYGDRTQ 388
DN+ S NK K TLIV P S+ + W + + + P M Y G+ +
Sbjct: 570 DNLP--STWQDNKKP--YASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSS 625
Query: 389 DVEELKMYD----LVLTTYSTLAIEESW--------------LESPVKKIEWWRVILDEA 430
L +VLTTY ++ W + S + + ++R+I+DE
Sbjct: 626 LKTLLTKTKTPPTVVLTTYGI--VQNEWTKHSKGRMTDEDVNISSGLFSVNFYRIIIDEG 683
Query: 431 HVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQ 490
H I+N S+ V L K +WV+TGTPI N DL+SL+ FL+ +P+ +YW++ +
Sbjct: 684 HNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVS 743
Query: 491 RPLAQGNRK-GLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKL 543
P N K + ++ + LRRTK K L+ L PK + + S + L
Sbjct: 744 TPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLL 803
Query: 544 YDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRS--------- 594
Y L KA+ V+ I G L++ YST+L +LRLRQ+C + L S +
Sbjct: 804 YKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGSQDENDEDLSKNNK 863
Query: 595 IIPSNTIE------------DVSNNPDLLKKLVEVLQ----DGEDF---DCPICISPPSD 635
++ T+E D S + + L +++ L+ D + F +C IC + P D
Sbjct: 864 LVTEQTVELDSLMRVVSERFDNSFSKEELDAMIQRLKVKYPDNKSFQSLECSICTTEPMD 923
Query: 636 I---IITCCAHIFCRSCILKTL--QHTKPC---CPLCRH--------PLLQSDLFSSPPE 679
+ + T C H FC C+ + + Q++K CP CR+ L+Q++ S E
Sbjct: 924 LDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDACRLLALVQTNSNSKNLE 983
Query: 680 SSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAG- 738
A K SSK++ALL L L+D + V+FSQF L +LE+ L
Sbjct: 984 FKPYSPASK------SSKITALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFS 1037
Query: 739 ---FKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEP 795
K+ + DG ++ K+R V+ +F +LL SLKA G G+NLT AS ++++P
Sbjct: 1038 KDVAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDP 1097
Query: 796 WWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQ 855
WW+P++E+QA+DR+HRIGQ VK++R I+++SIEE++L +Q++K+ + EA ++
Sbjct: 1098 WWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIG-EAMDTDEDER 1156
Query: 856 REVSTDDLRILM 867
R+ +++++L
Sbjct: 1157 RKRRIEEIQMLF 1168
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2
Length = 1138
Score = 273 bits (699), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 218/730 (29%), Positives = 327/730 (44%), Gaps = 190/730 (26%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADD 256
+K L +HQK+ L WL+ RE+ ++P+ GGI ADD
Sbjct: 542 LKVPLLLHQKQALAWLLWRES-------------------------QKPQ---GGILADD 573
Query: 257 MGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSA 316
MGLGKTLT+++LI LT N E E E SK
Sbjct: 574 MGLGKTLTMIALI-----------LTKKNQQKSKEKERSEPVTWLSK------------- 609
Query: 317 RGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGM 376
N SS F TLIVCP S+ W ++E+
Sbjct: 610 ------------------------NDSSVFTSSG-TLIVCPASLIHHWKNEVEKRVTSNR 644
Query: 377 LKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE----------------ESWLESPVKK 419
L+ Y+Y+G +R++ + L YD+V+TTYS LA E +P+ +
Sbjct: 645 LRIYLYHGPNRSRHAKVLSTYDIVITTYSLLAKEIPTTKQEGEVPGANLSVEGTSAPLLQ 704
Query: 420 IEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPF 479
+ W R+ILDEAH +KN Q S V L A+ RW VTGTPIQN D++SLM FL+ PF
Sbjct: 705 VVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPF 764
Query: 480 SVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQPKTIEKYY 533
S W+S + G+ KG RL +L ++ LRRTKD K L+ L + + +
Sbjct: 765 DEFSLWKSQVD----NGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHR 820
Query: 534 VELSLEERKLYDELEGKAKGVVQDYIN--------------------------------- 560
++LS +ER +YD +++ +Q Y+
Sbjct: 821 LKLSEDERAVYDIFLARSRSALQSYLKRQEGRGSHHGRSPDNPFSRVAQEFGSSVSQGCP 880
Query: 561 -AGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQ 619
A S + VLS LLRLRQ C +L+L ++S + +E L ++L +
Sbjct: 881 AADSQRPSTVHVLSQLLRLRQCCCHLSL----LKSALDPTELESEGLVLSLEEQLSALTL 936
Query: 620 DGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPE 679
D P SP + TC +++LF
Sbjct: 937 SKVDVSEP---SPTVSLNGTC----------------------------FKAELFDDTRR 965
Query: 680 SSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGF 739
S+ KVS+LL L ++ + KSV+ SQ+ ML ++ L+
Sbjct: 966 ST---------------KVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRL 1010
Query: 740 KLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNP 799
+DGS+N K+R ++E F + GP V+L SL A G G+NLT + +FLL+ WNP
Sbjct: 1011 TYATIDGSVNPKQRMDLVEAFNH--SQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNP 1068
Query: 800 AVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVS 859
++E+QA DR++R+GQK+DV I R + ++EE+IL+LQ++KK LA++ +++
Sbjct: 1069 SLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSEGPVTKLT 1128
Query: 860 TDDLRILMSL 869
DL+IL +
Sbjct: 1129 LADLKILFGI 1138
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 269 bits (688), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 187/602 (31%), Positives = 296/602 (49%), Gaps = 86/602 (14%)
Query: 329 DDNVKGKSVG----MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGM-LKTYMYY 383
DD GK++ +L + S +K LIV ++ W +L P L Y+++
Sbjct: 276 DDMGLGKTIQTIALLLTQKSQDPLRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHH 335
Query: 384 GDRTQDVE--ELKMYDLVLTTYSTLAIEESWLES---------------PVKKIEWWRVI 426
G ++++ EL YD+VLTTYS LA E ++ + + W+R++
Sbjct: 336 GSTKKNLDSYELSQYDVVLTTYSMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIV 395
Query: 427 LDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQ 486
LDEAH I+N + ++ L+AK RW ++GTPIQN + +SL+ FL+ +P+ V S +
Sbjct: 396 LDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFA 455
Query: 487 SLIQRPL----AQGNRKGLSRLQVLMSTISLRRTKDK-----GLIGLQPKTIEKYYVELS 537
I RPL A L RL++L+++ RRTK+ ++ L PKTI V L
Sbjct: 456 KDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLL 515
Query: 538 LEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIP 597
EER LY+E A+ +V +Y N + Y +L LLRLRQ C + L S S+
Sbjct: 516 PEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSS--SLDN 573
Query: 598 SNTIEDVSNNPDLLKKL----VEVLQDGEDFDCPICISPP-SDIIITCCAHIFCRSCILK 652
S I D N + K L +E + +DF+C +C+ P + + I C H C+ C+
Sbjct: 574 SFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMSM 633
Query: 653 TLQHTKPC---------CPLCRHPLLQSDLFS-------------------------SPP 678
+ CP+CR ++Q L S
Sbjct: 634 LVGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSLKQLELDMNQSFSEQ 693
Query: 679 ESSDMDIAGKTLKNFT------------SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKM 726
ES + + + FT SSK++ +L + K K +V+SQF +
Sbjct: 694 ESIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQY 753
Query: 727 LILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTA 786
L L+ L+ + +R DG+M+A +R + + F N V+L SLKA G+NLT
Sbjct: 754 LCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNN--DKDVLVMLVSLKAGSVGLNLTI 811
Query: 787 ASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLARE 846
A+ V L EP++NP++E+QA+DRVHR+GQ++ V + R I +++IEERI+ +Q +K++L +E
Sbjct: 812 ANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKE 871
Query: 847 AF 848
A
Sbjct: 872 AL 873
Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 28/73 (38%)
Query: 201 LFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLG 260
L HQ EG W+ E S + GG+ ADDMGLG
Sbjct: 250 LLPHQVEGHAWMESMEQSSKC----------------------------GGVMADDMGLG 281
Query: 261 KTLTLLSLIALDK 273
KT+ ++L+ K
Sbjct: 282 KTIQTIALLLTQK 294
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 259 bits (662), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 181/551 (32%), Positives = 278/551 (50%), Gaps = 89/551 (16%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAI 408
K TL+V P S+ W ++++ L +Y+G R + ++ + YD+V+TTY L
Sbjct: 289 KSTLVVAPLSLIKQWESEVQ---TKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVS 345
Query: 409 EESWL---------ESPVKK------------IEWWRVILDEAHVIKNANAQQSRTVTNL 447
E W+ +SP + WWR+ILDEAH IKN +++ + L
Sbjct: 346 E--WVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIKNKSSKSALACCAL 403
Query: 448 NAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRK-GLSRLQV 506
RW +TGTP+QN +L+SL+ FL PF+ +S W+ I PL QG RL++
Sbjct: 404 QGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEENLVFKRLRM 463
Query: 507 LMSTISLRRTKD-----------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVV 555
L+S I LRRTK G + L + + K + ER Y L + +
Sbjct: 464 LLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKVICKFEESERDFYSNLARNMERTM 523
Query: 556 QDYINAGSLMRNYSTVLSILLRLRQICTN-LALCPSDVRSIIPSNTIEDVSN-------- 606
+++N+G L +NY+ +L +LLRLRQ C + +L + + N ++ +N
Sbjct: 524 SNFVNSGKLGKNYTNILCLLLRLRQACNHPQSLNFQFEQDVDAFNALDGAANTNKLASDQ 583
Query: 607 NPDLLKKLVEVLQDG---EDFDCPICISP-PSDIIITCCAHIFCRSCILKTLQHTKPCCP 662
+ D L L+E ++ G + F C IC++ P D H K C
Sbjct: 584 DVDDLANLLETVEIGSRKKSF-CTICMAELPPDF-------------------HEKKCKD 623
Query: 663 LCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLL-LQLRDKKPTT----KS 717
C + D P KTL + SSK+ +L +L L +++ T K+
Sbjct: 624 -CSRNFKELDKGIQDPND-------KTL--YKSSKIREILKILSLDEQEEDDTVRGLRKT 673
Query: 718 VVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA 777
++FSQF L +++ L+ AG +R DG MN + R + ++ + G VLL SLK
Sbjct: 674 IIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDS--GTQVLLCSLKC 731
Query: 778 SGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837
G+NLT ASRV L + WWNPA+EEQA+DRVHRIGQ+ DV + +L+V N+IEE+I+ELQ
Sbjct: 732 GALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQ 791
Query: 838 DRKKKLAREAF 848
+ K+ LA++A
Sbjct: 792 NLKRDLAKQAL 802
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 39/139 (28%)
Query: 144 SGNDVSFGLSEAMVVKERKGERGVKSVDEIF----------KLVDKNVKKKAKMEAMEPP 193
S + + FG + RKG G+ + +EI KL + NV K ++M+
Sbjct: 164 STSTLYFGKHNKPTSENRKGPIGIPT-EEILTSQNTQAMLHKLFENNVLDNVKDDSMQRQ 222
Query: 194 KEVIKS---ELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRG 250
I L HQ +GL WL RE + G
Sbjct: 223 SSFIPGMHIRLLDHQVQGLTWLKSRETVSK-------------------------SSASG 257
Query: 251 GIFADDMGLGKTLTLLSLI 269
GI ADDMGLGKT+ +++LI
Sbjct: 258 GILADDMGLGKTIQMIALI 276
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 253 bits (647), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 182/549 (33%), Positives = 281/549 (51%), Gaps = 66/549 (12%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQ-DVEEL-KMY--DLVLTTYSTLA 407
TL+V P S+ W + E L TY+Y+ D++EL K Y ++++T+Y TL
Sbjct: 463 TLVVAPMSLLWQWEQECERVG----LSTYVYHEKGADIDLDELFKTYSPNILITSYHTLV 518
Query: 408 I------------------EESWLESP-VKKIEWWRVILDEAHVIKNANAQQSRTVTNLN 448
E S E P + + R++LDEAHVIKN N ++ L
Sbjct: 519 SHYGQIKALGGGLDRNVISETSSHERPKIFTKHFHRIVLDEAHVIKNRNTVSAKACCLLR 578
Query: 449 AKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN-RKGLSRLQVL 507
A +W +TGTPI N DLFS++ FL P++ YW++ I P +G L +Q +
Sbjct: 579 ATNKWALTGTPIHNRLEDLFSILKFLGAAPWNDFIYWRNFITLPFQEGKIVSALMTVQCI 638
Query: 508 MSTISLRRTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINA 561
+ I LRRTK+ L+ L KTI V L+ +ER +Y + +A+ +Q +
Sbjct: 639 LEPIVLRRTKNMKQADGSPLVVLPKKTINIEKVALTDQERVIYSYVLARAQTSLQKSEAS 698
Query: 562 GSLMRNYSTVLSILLRLRQICTNLAL-------CPSD-----------VRSIIPSNTIED 603
++ RNY +L+ +LRLRQ C + AL P+D ++S+I +
Sbjct: 699 EAVGRNYLNILTQILRLRQSCCDPALILRPEAEVPTDEQLQIEENESQLKSMIQQYNDDT 758
Query: 604 VSNNPDLLKKLVEVLQD-GEDFDCPICISPPSDIIITCCAHIFCRSCILKT--LQHTK-- 658
++ + +++ LQD +CPIC + + I+ C H+ C C+ Q +K
Sbjct: 759 QTSACEYSSEIIAQLQDQSAPPECPICAEDVTKLAISKCLHMGCVDCLADNVRFQESKKQ 818
Query: 659 -PCCPLCRHPLLQSDLFSSPPESSDM-DIAGKTLKNFT-SSKVSALLTLLLQLRDKKPTT 715
P C +CR P D+F D DI K L + SSK+ AL++ L QL
Sbjct: 819 TPVCCICRQPAALKDIFEVERTGEDCKDIRLKKLSDRPRSSKLVALVSKLKQL---PKDA 875
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
KSVVFSQF L +++ L+ + R DG+++ ++R V++ FG +VLL SL
Sbjct: 876 KSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVLKAFG---LSKGSVLLISL 932
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
K G G+NL A+ F+++PWW A E QA+DR+HR+GQ +DV + R IV NS+EE++L+
Sbjct: 933 KTGGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLK 992
Query: 836 LQDRKKKLA 844
+Q +K LA
Sbjct: 993 IQQQKMVLA 1001
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 30/125 (24%)
Query: 183 KKAKMEAMEPPKEVIKS---ELFVHQKEGLGWLVRRE----------NSEELPPFW---- 225
K+ + E +E P+ ++ EL +QK+GL W++ RE +S + P W
Sbjct: 346 KRIEKEDVEQPETEVEGFPLELRRYQKQGLTWMISRETEVSEYFDNDDSGPINPLWTKVD 405
Query: 226 ----EEKGGGFVNVLTNYHTDKRPEPLR---GGIFADDMGLGKTLTLLSLIALDKCAG-- 276
+EK +VN + T K P+ R GGI AD+MGLGKT++ L+++ D+ G
Sbjct: 406 FPGSDEKF--YVNFSSGALTLKFPKQERSFSGGILADEMGLGKTISTLAMVYRDRHVGCT 463
Query: 277 --VAP 279
VAP
Sbjct: 464 LVVAP 468
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 250 bits (638), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 187/606 (30%), Positives = 300/606 (49%), Gaps = 95/606 (15%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKT-YMYYGDRTQD--VEELKMYDLVLTTYSTL 406
K TLI+ P S+ W ++ P T Y+++G + E+L YD+VLTTY+ +
Sbjct: 441 KTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVI 500
Query: 407 AIE-------ESWLE--SPVKKIE--------WWRVILDEAHVIKNANAQQSRTVTNLNA 449
A E + +E +P+KK E W+RVILDEA IKN N +R L +
Sbjct: 501 AYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYRVILDEAQTIKNRNTLAARGCCLLES 560
Query: 450 KRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQ--GNRKGLSRLQVL 507
RW ++GTP+QNG + +SL+ FL+ +P+S S + PL+ + R + L
Sbjct: 561 TYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGL 620
Query: 508 MSTISLRRTKD-----KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAG 562
+ + LRRTK+ K ++ L PKT K +LS E + Y+ L+ A+ ++ Y+ G
Sbjct: 621 LKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEG 680
Query: 563 SLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIE----DVSNN--PDLLK--KL 614
++ +Y ++L +LLRLRQ C + L + ++ +++ + + N P+ + KL
Sbjct: 681 TITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKL 740
Query: 615 VEVLQDGEDFDCPICISPPSD-IIITCCAHIFCRSCILKTL------------QHTKPCC 661
+E LQ C +C+ ++ +II C H CR C+ + ++ P C
Sbjct: 741 IETLQ------CSLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKC 794
Query: 662 PLCR-----HPLLQSDLFS-----SPPESSDMDIAGKTLKNF------------------ 693
+C LL LF +P +D + + +
Sbjct: 795 SVCEEYIDTERLLSYALFRRYSGMAPIVDADNKLRTENISELLPKQYSNILENRQMGMKI 854
Query: 694 --------TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLD 745
TS+K+ L + ++ K+PT K ++FSQF L L P + G K L
Sbjct: 855 FTDPKHWTTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYT 914
Query: 746 GSMNAKKRAQVIEEFG-NPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQ 804
G ++ +R Q + F +P VLL SLKA G+NLT A+ V +L+P+WNP +EEQ
Sbjct: 915 GGLSTAERNQALINFEVDP---NVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQ 971
Query: 805 AMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKG-KDQREVSTDDL 863
A+DR HRIGQ + V I+R++ N+IEER+L LQDRK++L A KG ++ ++T +L
Sbjct: 972 AVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISRLNTKEL 1031
Query: 864 RILMSL 869
L +
Sbjct: 1032 SFLFGM 1037
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2
Length = 1162
Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 175/555 (31%), Positives = 279/555 (50%), Gaps = 73/555 (13%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE- 409
TLI+CP S+ W ++E+ L+ Y+Y+G +R L YD+V+TTYS +A E
Sbjct: 644 TLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEI 703
Query: 410 -----ESWL----------ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWV 454
E+ + +P+ +I W R+ILDEAH +KN Q S V L A RW
Sbjct: 704 PTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWA 763
Query: 455 VTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLR 514
VTGTPIQN D++SL+ FL+ PF + W+S + G++KG RL +L ++ LR
Sbjct: 764 VTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVD----NGSKKGGERLSILTKSLLLR 819
Query: 515 RTKD------KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNY 568
RTKD + L+ L + + ++++LS +E +Y+ +++ +Q Y+ N
Sbjct: 820 RTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQ 879
Query: 569 STVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCP- 627
S RS P+N V+ L+ E + E D P
Sbjct: 880 SG----------------------RS--PNNPFSRVA-----LEFGSEEPRHSEAADSPR 910
Query: 628 ---ICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ----SDLFSSPPES 680
+ I + CC H+ L ++ L L S+L S P S
Sbjct: 911 SSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEP-S 969
Query: 681 SDMDIAGKTLKN------FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPL 734
S + + G K S+K+S+LL L ++ + KSV+ SQ+ ML ++ L
Sbjct: 970 STVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHL 1029
Query: 735 QAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLE 794
+ G +DGS+N K+R ++E F + GP V+L SL A G G+NLT + +FLL+
Sbjct: 1030 KKHGLTYATIDGSVNPKQRMDLVEAFNHSR--GPQVMLISLLAGGVGLNLTGGNHLFLLD 1087
Query: 795 PWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKD 854
WNP++E+QA DR++R+GQ++DV I R + ++EE+IL+LQ++KK LA++ G+
Sbjct: 1088 MHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGES 1147
Query: 855 QREVSTDDLRILMSL 869
+++ DLR+L +
Sbjct: 1148 VTKLTLADLRVLFGI 1162
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 141/519 (27%), Positives = 217/519 (41%), Gaps = 153/519 (29%)
Query: 138 GGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVKKKAKMEAMEPPKEVI 197
G L+L S V+ G S +G V ++K+ + + + + P + V+
Sbjct: 504 GSLELKSACQVTAGGSSQCY----RGHTNQDHVHAVWKITSEAIGQLHRSLESCPGETVV 559
Query: 198 -------KSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRG 250
K L +HQK+ L WL+ RE+ ++P+ G
Sbjct: 560 AEDPAGLKVPLLLHQKQALAWLLWRES-------------------------QKPQ---G 591
Query: 251 GIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKM 310
GI ADDMGLGKTLT+++LI K
Sbjct: 592 GILADDMGLGKTLTMIALILTQK------------------------------------- 614
Query: 311 SNKGSARGKKHKTVNTKM--DDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQL 368
N+ K+ T T + DD+ S G L I+CP S+ W ++
Sbjct: 615 -NQEKKEEKEKSTALTWLSKDDSCDFTSHGTL-------------IICPASLIHHWKNEV 660
Query: 369 EEHTVPGMLKTYMYYG-DRTQDVEELKMYDLVLTTYSTLAIE------ESWL-------- 413
E+ L+ Y+Y+G +R L YD+V+TTYS +A E E+ +
Sbjct: 661 EKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVE 720
Query: 414 --ESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLM 471
+P+ +I W R+ILDEAH +KN Q S V L A RW VTGTPIQN D++SL+
Sbjct: 721 GTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLL 780
Query: 472 AFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD------KGLIGLQ 525
FL+ PF + W+S + G++KG RL +L ++ LRRTKD + L+ L
Sbjct: 781 KFLRCSPFDEFNLWRSQVD----NGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILP 836
Query: 526 PKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYS---------------- 569
+ + ++++LS +E +Y+ +++ +Q Y+ N S
Sbjct: 837 QRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFG 896
Query: 570 ------------------TVLSILLRLRQICTNLALCPS 590
+LS LLRLRQ C +L+L S
Sbjct: 897 SEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKS 935
>sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Drosophila melanogaster GN=lds
PE=1 SV=2
Length = 1061
Score = 219 bits (558), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 207/729 (28%), Positives = 323/729 (44%), Gaps = 158/729 (21%)
Query: 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADD 256
+K L HQK L W+ RE +LP RGGI ADD
Sbjct: 435 LKVSLMNHQKHALAWMSWRE--RKLP--------------------------RGGILADD 466
Query: 257 MGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKG-S 315
MGLGKTLT++S + L N +++E +DE + S + + + S G
Sbjct: 467 MGLGKTLTMISSV-----------LACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWK 515
Query: 316 ARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPG 375
++G+K D +G TL+VCP S+ W +++E
Sbjct: 516 SKGRK---------DTRRGG----------------TLVVCPASLLRQWESEVESKVSRQ 550
Query: 376 MLKTYMYYGD-RTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIK 434
L +++G+ R + L+ YD+V+TTY +A E L S V ++W R+ILDEAHV++
Sbjct: 551 KLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHKSL-SAVFGVKWRRIILDEAHVVR 609
Query: 435 NANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLA 494
N +Q S V +L K RW +TGTPIQN D+++L+ FL+ PF W+ I A
Sbjct: 610 NHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWIDNKSA 669
Query: 495 QGNRKGLSRLQVLMSTISLRRTK-----DKGLIGLQPKTIEKYYVELSLEERKLYDELEG 549
G +RL +LM ++ LRRTK D L L K + + L EE +Y +
Sbjct: 670 GGQ----NRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQTVMT 725
Query: 550 KAKGVVQDYIN----------------------------------------AGSLMRNYS 569
++ + +++ AGS S
Sbjct: 726 YSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKS 785
Query: 570 -TVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNP-----DLLKKLVEVLQDGED 623
+L +LLRLRQIC + L + + S T+ D S++ DLL +L ++
Sbjct: 786 HDILVLLLRLRQICCHPGLIDAMLDG-EESQTMGDHSSDSDTPEIDLLAQLNKLAITDTS 844
Query: 624 FDCPICISPPSD---IIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPES 680
D ++ D ++ A I S L L+ + P L R
Sbjct: 845 TDGQQSVANAGDDGPPLLPDEARIAKASKNL--LKRSNPVFNLHR--------------- 887
Query: 681 SDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFK 740
SSK++ ++ +L K K++V SQ+ +L +L + L G
Sbjct: 888 -------------PSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVA 934
Query: 741 LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPA 800
L L+G++ K R ++ EF N VLL SL A G G+NL A+ + LL+ WNP
Sbjct: 935 TLSLNGTIPVKNRQDIVNEF-NDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQ 993
Query: 801 VEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVST 860
+E QA DR++R+GQK++V I + + +++E+RI LQD+K LA + K +++
Sbjct: 994 LEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLA-DGVLTGAKVSSKLTI 1052
Query: 861 DDLRILMSL 869
DDL+ L +
Sbjct: 1053 DDLKGLFGM 1061
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 187/630 (29%), Positives = 289/630 (45%), Gaps = 114/630 (18%)
Query: 329 DDNVKGKSVG----MLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVP-GMLKTYMYY 383
DD GK++ ML S K LIV P SV W +LE T+++
Sbjct: 969 DDMGLGKTIQAIALMLANRSEESKCKTNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFG 1028
Query: 384 GDRTQDVE---ELKMYDLVLTTYSTLAIE--ESWLES---------PVKKIE-------- 421
G V+ +L YD VL +Y TLA E + W + V I+
Sbjct: 1029 GSGNGKVKHWRDLARYDAVLVSYQTLANEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTS 1088
Query: 422 -------------WWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
++R++LDE IKN N + S+ +N RWV++GTPIQN +L+
Sbjct: 1089 NEYYSPFFCNDSTFYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELY 1148
Query: 469 SLMAFLQFEPF--------SVKSYWQSLIQRPLAQGNRK-GLSRLQVLMSTISLRRTK-- 517
SL+ FL+ P+ + ++Q Q +RK L +++VL++ I LRR+K
Sbjct: 1149 SLIRFLRIPPYHKEQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKAD 1208
Query: 518 ---DKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
K L+ L PK +E L EE K Y LE K + + + +N S +YS+VL++
Sbjct: 1209 KIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAKKLLN-NSTRGSYSSVLTL 1267
Query: 575 LLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLK-----------KLVEVLQDGED 623
LLRLRQ C + L + + S D L+ +V+
Sbjct: 1268 LLRLRQACCHSELVVMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSGEAQAQVITSMNS 1327
Query: 624 FDCPIC---ISPPSDIIITCCAHIFCRSCI---------LKTLQHTK------PC--C-- 661
C C + P + ++T C H+ C +CI L + TK PC C
Sbjct: 1328 MTCFWCMEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGGAFAIPCKDCQR 1387
Query: 662 -----PLCRHPLL---------QSDLFS---SPPESSDMDIAGKTLKNFTS----SKVSA 700
+ H L + DL + S E + + NF S +K+
Sbjct: 1388 LTNEKDIVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQ 1447
Query: 701 LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA-GFKLLRLDGSMNAKKRAQVIEE 759
+ ++ ++ D+ T K ++FSQF +LE L+ F L+ GSMNA++R+ VI E
Sbjct: 1448 CIQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINE 1507
Query: 760 F-GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDV 818
F +P +LL S+KA +G+ LT A+ V +++P+WNP VEEQA DR +RI Q + V
Sbjct: 1508 FYRDPEK---RILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKV 1564
Query: 819 KIVRLIVRNSIEERILELQDRKKKLAREAF 848
++ +L +++S+E+RI ELQ RKK++ A
Sbjct: 1565 QVHKLFIKDSVEDRISELQKRKKEMVDSAM 1594
Score = 40.4 bits (93), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 33/94 (35%)
Query: 179 KNVKKKAKM---EAMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNV 235
+NVK+ + EA+ P E + L HQ+ GL WL++ ENS +
Sbjct: 920 ENVKQSESIIDGEALTP--EDMTVNLLKHQRLGLHWLLQVENSAK--------------- 962
Query: 236 LTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLI 269
+GG+ ADDMGLGKT+ ++L+
Sbjct: 963 -------------KGGLLADDMGLGKTIQAIALM 983
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 146/530 (27%), Positives = 235/530 (44%), Gaps = 86/530 (16%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAI 408
+LI+CPPS+ W + +++ LK +Y G T + +L D+++T+Y
Sbjct: 1335 SLIICPPSLTGHWENEFDQYA--PFLKVVVYAGGPTVRLTLRPQLSDADIIVTSYDVARN 1392
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + L K E+ +LDE H+IKN+ ++ ++ V + A R ++TGTPIQN +L+
Sbjct: 1393 DLAVL----NKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELW 1448
Query: 469 SLMAFLQFEPFSVKSYWQSLIQRPLAQG-NRK--------GLSRLQVLMSTI---SLRRT 516
SL FL + +Q +P+A N K G+ L+ L + LRR
Sbjct: 1449 SLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRL 1508
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K+ L L PK I+ YY EL +++LY + K K VV+ I + + L
Sbjct: 1509 KEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQ 1568
Query: 577 RLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDI 636
+R++C + AL S N+P L + + Q G D I+ P
Sbjct: 1569 YMRKLCNHPALVLS--------------PNHPQLAQVQDYLKQTG--LDLHDIINAP--- 1609
Query: 637 IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSS 696
+ L+TL LF D+D +NF
Sbjct: 1610 ----------KLSALRTL------------------LFECGIGEEDIDKKASQDQNFPIQ 1641
Query: 697 KVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPL---QAAGFKLLRLDGSMNAKKR 753
V + ++++F Q + ML ++E L +RLDGS++ + R
Sbjct: 1642 NVIS-------------QHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDR 1688
Query: 754 AQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIG 813
+V+ +F N P +LL + K G G+NLT A V +E WNP + QAMDR HRIG
Sbjct: 1689 QKVVRKF-NEDPSIDCLLLTT-KVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIG 1746
Query: 814 QKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDL 863
QK+ V + R+I + ++EE+I+ LQ K +A ++ + T L
Sbjct: 1747 QKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQL 1796
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 47/145 (32%)
Query: 129 SIVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVKKKAKME 188
SI+K V LE G+ G L E +V R+ ER D I +++D + K K+
Sbjct: 1218 SIIKLVPLEAGIADPKG------LPEELVAS-RERER-----DFIQQMMDPSKAKPFKLP 1265
Query: 189 AMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPL 248
IK+ L +Q++G+ WL F+N YH
Sbjct: 1266 I------AIKATLRKYQQDGVNWL------------------AFLN---KYHLH------ 1292
Query: 249 RGGIFADDMGLGKTLTLLSLIALDK 273
GI DDMGLGKTL + +IA D+
Sbjct: 1293 --GILCDDMGLGKTLQTICIIASDQ 1315
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 141/493 (28%), Positives = 223/493 (45%), Gaps = 89/493 (18%)
Query: 164 ERGVKSVDEIFKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSE---- 219
E + +D++++ N A + +EPP+ + + L +QK+ LGW+ E +
Sbjct: 524 ELNLNQLDQVYRKAQAN---DAHLPEVEPPESFVLT-LRPYQKQALGWMKNMEMAPGQSS 579
Query: 220 --------------------ELPPFWEEK-----------------GGGFVNVLTNYHTD 242
L P WEE + Y D
Sbjct: 580 SSQEQSVTQQGNGDTGERNVSLHPLWEEYEFPLDYDNPQANERLILSATRLFYFNPYTGD 639
Query: 243 ------KRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEE 296
+ + RGGI AD+MGLGKT+ + SL+ ++ + PG ++N V+ E
Sbjct: 640 LSLDFQRASKGSRGGILADEMGLGKTIMVASLLHANRTSD--PGEESEG--EINAVDAAE 695
Query: 297 MSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVC 356
S+ +K GSA+ + +V + L K+S GK +L+V
Sbjct: 696 GDVSTKRK---------GSAKQTSLASAFAASTSSVDQRKA--LLKASVSKGKA-SLVVA 743
Query: 357 PPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVE---ELKMYDLVLTTYSTLAIE---- 409
P S+ W +L + PG L +YY D D+ E D+V+T+Y TL E
Sbjct: 744 PMSLIGQWRDELIRASAPGSLTPVLYYADTKGDLLAQLESGKVDVVITSYGTLVTEYRRF 803
Query: 410 ---------ESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPI 460
+ +P+ I+W RVILDEAH IKN + +R +L ++RRW +TGTPI
Sbjct: 804 LDGGGASNRHLSVSAPLYCIDWLRVILDEAHNIKNRSTMNARACCDLVSRRRWALTGTPI 863
Query: 461 QNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKD-- 518
N DLFSL+ FL+ EP+ S++ S + +P + K L +QV++ ++ LRR K
Sbjct: 864 INRLTDLFSLLKFLRVEPWGDFSFFNSFVCKPFQAKSTKALDVVQVILESVLLRREKKMK 923
Query: 519 ----KGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSI 574
K ++ L PKTI +E S ER++YD + +A G++ RN S + S+
Sbjct: 924 DKDGKPIVELPPKTIVVKELEFSELERRIYDNVYRRAYLQFASLKANGTVTRNLSVIFSV 983
Query: 575 LLRLRQICTNLAL 587
L+RLRQ + +L
Sbjct: 984 LMRLRQAVCHPSL 996
Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 147/264 (55%), Gaps = 33/264 (12%)
Query: 617 VLQDGEDFDCPICI--SPPSDIIITCCAHIFCRSCILKTLQHTKP-----CCPLCRH-PL 668
V+ DGE+ +CPIC+ S S + C H C++C++ L K CP CR P+
Sbjct: 1100 VVSDGEN-ECPICLEESQISPCYLPRCMHSACKACLVDYLGQCKQKGDQGACPTCRKGPV 1158
Query: 669 LQSDLF----------SSPPESSDMDIAGK--TLKNF-----------TSSKVSALLTLL 705
++DL ++ +S D GK TL + TS+K+SAL++ L
Sbjct: 1159 QETDLIEAIRTRPATRAASGGASPTDRPGKACTLTSVPSVIYVRNNLRTSTKLSALISHL 1218
Query: 706 LQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGP 765
LR + K V+FSQF L L+E L F LRLDGS K R +++ EF +P P
Sbjct: 1219 NTLRATEAAFKGVIFSQFTSFLDLIEPVLTRYRFHFLRLDGSTPQKVRDKLVLEFQSPSP 1278
Query: 766 GGPTVL-LASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLI 824
VL L SLKA G G+NLTAA++++LL+ WWN ++E QA+DR+HR GQ V + R I
Sbjct: 1279 TNHVVLFLISLKAGGVGLNLTAANKIWLLDFWWNSSIENQAIDRIHRFGQTSPVSVFRYI 1338
Query: 825 VRNSIEERILELQDRKKKLAREAF 848
+++SIE+RIL +Q RK L + A
Sbjct: 1339 IKDSIEDRILLIQKRKDMLIKHAL 1362
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 152/555 (27%), Positives = 234/555 (42%), Gaps = 120/555 (21%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDV---EELKMYDLVLTTYSTLAI 408
+L+VCPP++ W+ ++ + L Y G T+ + ++K ++L++ +Y +
Sbjct: 1329 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRN 1388
Query: 409 EESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
+ + + I++ ILDE HVIKN + S+ V L A R +++GTPIQN +L+
Sbjct: 1389 DIDFF----RNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELW 1444
Query: 469 SLMAFL---------QFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTIS---LRRT 516
SL FL QF K S R ++ G+ + L + LRR
Sbjct: 1445 SLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRM 1504
Query: 517 KDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576
K+ L L PK I+ YY LS + +LY +D+ +
Sbjct: 1505 KEDVLQDLPPKIIQDYYCTLSPLQVQLY-----------EDFAKS--------------- 1538
Query: 577 RLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDI 636
R C DV + S T+ + + P L
Sbjct: 1539 --RAKC--------DVDETVSSATLSEETEKPKL-------------------------- 1562
Query: 637 IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLL----QSDLFSSPPESSDMDIAGKTLKN 692
H+F + LQ+ + LC HP L Q F + E + + +L +
Sbjct: 1563 --KATGHVF------QALQYLRK---LCNHPALVLTPQHPEFKTTAEK--LAVQNSSLHD 1609
Query: 693 FTSS-KVSALLTLLLQL-----RDKKPTTKSVV-------FSQFRKMLILLEEPL---QA 736
+ K+SAL LLL + T+SVV F Q + ML ++E L
Sbjct: 1610 IQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHL 1669
Query: 737 AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT--VLLASLKASGAGVNLTAASRVFLLE 794
LRLDGS+ +R ++ F N P+ VLL + G G+NLT A V +E
Sbjct: 1670 PSVTYLRLDGSIPPGQRHSIVSRFNN----DPSIDVLLLTTHVGGLGLNLTGADTVVFVE 1725
Query: 795 PWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKD 854
WNP + QAMDR HRIGQK V + RLI R ++EE+I+ LQ K +A ++
Sbjct: 1726 HDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSS 1785
Query: 855 QREVSTDDLRILMSL 869
+ + TD L L +L
Sbjct: 1786 LQSMGTDQLLDLFTL 1800
>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila
grimshawi GN=okr PE=3 SV=1
Length = 786
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 133/532 (25%), Positives = 230/532 (43%), Gaps = 92/532 (17%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDL----------VLTT 402
++V P S+ W + + M M G + + L+ + + +L +
Sbjct: 210 IVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTSTRCGTPVLLIS 269
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
Y T + L K E VI DE H +KN++ + + L KRR +++GTPIQN
Sbjct: 270 YETFRLYAHIL----CKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 325
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQG---NRKGLSRLQVLMSTISLRRTKDK 519
+ FSL+ F+ E + ++ + + +G + R + L+ T +
Sbjct: 326 DLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTERERALLKT--------Q 377
Query: 520 GLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLR 579
LIGL + I + ++ L L K + VV + A L + + L+
Sbjct: 378 ELIGLVNQCIIRRTNQI------LTKYLPVKFEMVVCAKLTAVQLQ-----IYTNFLKSD 426
Query: 580 QICTNLALC--PSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDII 637
Q+C +LA C + + ++ T++ + N+PDL+ + + + G
Sbjct: 427 QVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKG---------------- 470
Query: 638 ITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSK 697
+ Q+ P + P+ + +++GK +
Sbjct: 471 -------------FENSQNVLPA--------------NYKPKDINPELSGKFM------- 496
Query: 698 VSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVI 757
LL +L K V+ S + + L L E+ + + +RLDG+M KKR++V+
Sbjct: 497 ---LLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVV 553
Query: 758 EEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKED 817
+ F +P +L+S KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+
Sbjct: 554 DRFNDPSSDCFLFMLSS-KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 612
Query: 818 VKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
I RL+ SIEE+IL+ Q KK L+ ++ + DDL+ L S
Sbjct: 613 CYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESVEKHFTRDDLKDLFSF 664
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila
virilis GN=okr PE=3 SV=1
Length = 786
Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 134/529 (25%), Positives = 232/529 (43%), Gaps = 86/529 (16%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEELKMYD-------LVLTT 402
++V P S+ W + + M M G D T+ +E+ M ++L +
Sbjct: 210 IVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNTATRCGTPVLLIS 269
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
Y T + L K E VI DE H +KN++ + + L KRR +++GTPIQN
Sbjct: 270 YETFRLYSHIL----CKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 325
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLI 522
+ FSL+ F+ E S ++ + + +G + + +L +T++ L+
Sbjct: 326 DLTEYFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADSTDAE---RERALEKTQE--LV 380
Query: 523 GLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQIC 582
GL + I + ++ L L K + VV + A L + + L+ Q+
Sbjct: 381 GLVNQCIIRRTNQI------LTKYLPVKFEMVVCAKLTAVQLQ-----LYTNFLKSDQVR 429
Query: 583 TNLALCP--SDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITC 640
+LA C + + ++ T++ + N+PDL+ + + + G F+ + PP+
Sbjct: 430 RSLADCTDKTTLTALADITTLKKLCNHPDLIYEKIAAREKG--FENSQNVLPPN------ 481
Query: 641 CAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSA 700
P+ + +++GK +
Sbjct: 482 -----------------------------------YKPKDVNPELSGKFM---------- 496
Query: 701 LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
LL +L K V+ S + + L L E+ + + +RLDG+M KKR++V++ F
Sbjct: 497 LLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRF 556
Query: 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
+P +L+S KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I
Sbjct: 557 NDPATDCFLFMLSS-KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 615
Query: 821 VRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
RL+ SIEE+IL+ Q KK L+ ++ + DDL+ L
Sbjct: 616 YRLVASGSIEEKILQRQTHKKSLSSSIIDNNDSAEKHFTRDDLKDLFRF 664
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
mojavensis GN=okr PE=3 SV=1
Length = 783
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 135/529 (25%), Positives = 233/529 (44%), Gaps = 86/529 (16%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEELKMYD-------LVLTT 402
+IV P S+ W + + M M G D T+ +E+ M ++L +
Sbjct: 210 IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRALEQFAMNTATRCGTPVLLIS 269
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
Y T + L K E VI DE H +KN++ + + L KRR +++GTPIQN
Sbjct: 270 YETFRLYAHIL----CKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 325
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLI 522
+ FSL+ F+ E + ++ + + +G + + +L++T++ LI
Sbjct: 326 DLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTDAE---RQRALQKTQE--LI 380
Query: 523 GLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQIC 582
GL + I + ++ L L K + VV + L + + L+ Q+
Sbjct: 381 GLVNQCIIRRTNQI------LTKYLPVKFEMVVCVKLTPVQLQ-----IYTNFLKSDQVR 429
Query: 583 TNLALC--PSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITC 640
+LA C + + ++ T++ + N+PDL+ + + + G F+ + PP+
Sbjct: 430 RSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKG--FENSQNVLPPN------ 481
Query: 641 CAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSA 700
P+ + +++GK +
Sbjct: 482 -----------------------------------YKPKDVNPELSGKFM---------- 496
Query: 701 LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
LL +L K V+ S + + L L E+ + + +RLDG+M KKR++V++ F
Sbjct: 497 LLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKVVDRF 556
Query: 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
+P +L+S KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I
Sbjct: 557 NDPSTDCFLFMLSS-KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 615
Query: 821 VRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
RL+ SIEE+IL+ Q KK L+ ++ + DDL+ L S
Sbjct: 616 YRLVASGSIEEKILQRQTHKKSLSSTIIDNNESSEKHFTRDDLKDLFSF 664
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus
GN=RAD54B PE=2 SV=1
Length = 918
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 135/538 (25%), Positives = 232/538 (43%), Gaps = 96/538 (17%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEEL---KMYDLVLTTYSTL 406
K LIV P S+ W + ++ G + ++ D+ VEE +Y +++ +Y L
Sbjct: 363 KRALIVTPGSLVKNWKKEFQKWL--GSERIKVFTVDQDHKVEEFISSPLYSVMIISYEML 420
Query: 407 --AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
++++ ++ IE+ +I DE H +KN++ + + +TNL+ +RR ++TGTPIQN
Sbjct: 421 LRSLDQ------IQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDL 474
Query: 465 FDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQG------------NRKGLSRLQVLMSTIS 512
+ ++L+ F+ S ++ + + P+ + K + L L
Sbjct: 475 QEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTGLFI 534
Query: 513 LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVL 572
LRRT++ L PK + + + + +LY +L S V+
Sbjct: 535 LRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLS-------------------SRVI 575
Query: 573 SILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISP 632
S L+ R L P +I ++ + N+P LL K ++ C P
Sbjct: 576 SSCLQGR-----LENSP----HLICIGALKKLCNHPCLLFKALK----------EKCCDP 616
Query: 633 PSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKN 692
SD +H ++S L+ + D T
Sbjct: 617 KSD-------------------EH------------VESSLYEGLTDVFPQDYTSDTFSE 645
Query: 693 FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKK 752
S K+ L+ LL +R+ + + V+ S + + L +L E + G+ RLDG+ +
Sbjct: 646 IDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQ 705
Query: 753 RAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRI 812
R Q+++ F N + L S KA G G+NL AS + L + WNPA + QAM RV R
Sbjct: 706 RQQIVDSF-NSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRD 764
Query: 813 GQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFR-RKGKDQREVSTDDLRILMSL 869
GQK V I RL+ +IEE+I + Q K+ L+ K + S ++LR L +L
Sbjct: 765 GQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTL 822
>sp|P41447|GTA_NPVAC Probable global transactivator OS=Autographa californica nuclear
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 506
Score = 132 bits (333), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 141/268 (52%), Gaps = 27/268 (10%)
Query: 329 DDNVKGKSVGML---NKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVP-GMLKTYMYYG 384
DD GK++ +L K++S K TLIVCP S+ + W+T+ ++H + +LK Y
Sbjct: 57 DDMGLGKTLSVLMLIAKNNSLQLK--TLIVCPLSLINHWVTENKKHDLNFNILKYY---- 110
Query: 385 DRTQDVEELKMYDLVLTTYSTLAIEESWL----ESPVKKIEWWRVILDEAHVIKNANAQQ 440
++ D + ++ Y +V+TTY L + +S + W RV+LDEAH+IKN
Sbjct: 111 -KSLDADTVEHYHIVVTTYDVLLAHFKLIKQNKQSSLFSTRWHRVVLDEAHIIKNCKTGV 169
Query: 441 SRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKG 500
L A RW +TGTPI N +D++S++ FLQ PF+ W+ L N
Sbjct: 170 HNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNNPRVWKML------NKNNDS 223
Query: 501 LSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDEL-----EGKAKGV- 554
+R++ ++ I L+R K + + T+E +V + EE+ LYD+L E K V
Sbjct: 224 TNRIKSIIKKIVLKRDKSEISSNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYVKAVA 283
Query: 555 VQDYINAGSLMRNYSTVLSILLRLRQIC 582
++ NA S ++ VL ++L+LRQIC
Sbjct: 284 ARENENALSRLQQMQHVLWLILKLRQIC 311
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 692 NFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAK 751
++ SSK +L L+ + + K ++ SQ+ + L + E + L G + +
Sbjct: 333 DYMSSKCKRVLDLVDDILNT-SNDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVE 391
Query: 752 KRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHR 811
R F + +LL S+K G G+NL + + +LEP WNP +E QA DR+ R
Sbjct: 392 DRILAETTFNDAANTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISR 451
Query: 812 IGQKEDVKIVRL--IVRNSIEERILELQDRKKKLAREAF 848
+GQ ++ + ++ + NSIE+ I + QD+K F
Sbjct: 452 MGQTKNTYVYKMLNVEDNSIEKYIKQRQDKKIAFVNTVF 490
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 27/80 (33%)
Query: 191 EPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRG 250
+P E L HQK+G+ W++ RE K G RP G
Sbjct: 20 DPNFEHQTPNLLAHQKKGIQWMINRE-----------KNG-------------RPN---G 52
Query: 251 GIFADDMGLGKTLTLLSLIA 270
G+ ADDMGLGKTL++L LIA
Sbjct: 53 GVLADDMGLGKTLSVLMLIA 72
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 135/522 (25%), Positives = 225/522 (43%), Gaps = 80/522 (15%)
Query: 353 LIVCPP-SVFSTWITQLEEHT--VPGMLKTYMYYGDRTQDVEE------------LKMYD 397
+VC P S W+ + + T +P ML Y+G TQ+ + L+++
Sbjct: 274 FLVCGPLSTLPNWMAEFKRFTPDIPTML----YHG--TQEERQKLVRNIYKRKGTLQIHP 327
Query: 398 LVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTG 457
+V+T++ + + L+ W +I+DE H IKN + R + NA + ++TG
Sbjct: 328 VVITSFEIAMRDRNALQH----CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTG 383
Query: 458 TPIQNGSFDLFSLMAFL---------QFEP-FSVKSYWQSLIQRPLAQGNRKGLSRLQVL 507
TP+QN +L+SL+ FL FE F + S ++ + + L L +
Sbjct: 384 TPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQI 443
Query: 508 MSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRN 567
++ LRR K + + PK Y LS ++ Y + +
Sbjct: 444 LTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR----------------- 486
Query: 568 YSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQ---DGEDF 624
T+ ++ + L+ R S + + P+ L+KL+ +Q D E
Sbjct: 487 --TIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERA 544
Query: 625 DCPICISPPSDIIITC-CAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDM 683
+ I S++ + + R C C HP L + P + +
Sbjct: 545 VVEVNIPVESEVNLKLQNIMMLLRKC--------------CNHPYLIE--YPIDPVTQEF 588
Query: 684 DIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLR 743
I + + N S K L +L +L KK K ++FSQ ML +L + F R
Sbjct: 589 KIDEELVTN--SGKFLILDRMLPEL--KKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSR 644
Query: 744 LDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEE 803
LDGSM+ +R + + F N P + L S +A G G+NLTAA V + + WNP +
Sbjct: 645 LDGSMSYSEREKNMHSF-NTDPEV-FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDL 702
Query: 804 QAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAR 845
QA DR HRIGQ + V + RL+ N+I+++I+E K+KL +
Sbjct: 703 QAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 744
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2
Length = 821
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 132/514 (25%), Positives = 227/514 (44%), Gaps = 64/514 (12%)
Query: 353 LIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYG---DRTQDVEE-------LKMYDLVLT 401
+VC P S W+ + + T + T +Y+G DR + V+ L+++ +V+T
Sbjct: 257 FLVCGPLSTLPNWMAEFKRFTPE--IPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVT 314
Query: 402 TYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQ 461
++ +++ L+ W +I+DE H IKN + R + NA + ++TGTP+Q
Sbjct: 315 SFEIAMRDQNALQH----CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 370
Query: 462 NGSFDLFSLMAFL---------QFEP-FSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTI 511
N +L+SL+ FL FE F + S ++ + + L L +++
Sbjct: 371 NNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPF 430
Query: 512 SLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
LRR K + + PK Y L ++ Y + + T+
Sbjct: 431 LLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNR-------------------TI 471
Query: 572 LSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICIS 631
++ + L+ R S ++ P L+KL+ +Q + + +
Sbjct: 472 ANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPEVNRERTVV-- 529
Query: 632 PPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLK 691
+I I ++ R+ ++ + CC HP + + P + + I + +
Sbjct: 530 -EGNIPIESEVNLKLRNIMMLL----RKCC---NHPYMIE--YPIDPVTQEFKIDEELVT 579
Query: 692 NFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAK 751
N S K L +L +L KK K +VFSQ ML +L + F RLDGSM+
Sbjct: 580 N--SGKFLILDRMLPEL--KKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYS 635
Query: 752 KRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHR 811
+R + I F N P + L S +A G G+NLTAA V + + WNP + QA DR HR
Sbjct: 636 EREKNIYSF-NTDPD-VFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHR 693
Query: 812 IGQKEDVKIVRLIVRNSIEERILELQDRKKKLAR 845
IGQ + V + RL+ N+I+++I+E K+KL +
Sbjct: 694 IGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 727
>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
GN=RAD54B PE=1 SV=1
Length = 910
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/539 (25%), Positives = 235/539 (43%), Gaps = 98/539 (18%)
Query: 350 KITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK---MYDLVLTTYSTL 406
K TLIV P S+ + W + ++ G + ++ D+ VEE Y +++ +Y L
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWL--GSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEML 413
Query: 407 --AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
++++ +K I++ +I DE H +KN+ + + + +L+ ++R ++TGTPIQN
Sbjct: 414 LRSLDQ------IKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDL 467
Query: 465 FDLFSLMAFLQFEPFSVKSYWQSLIQRPL-------------AQGNRKGLSRLQVLMSTI 511
+ F+L+ F+ S ++ + + P+ G R+ + L L
Sbjct: 468 QEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRA-AELTCLTGLF 526
Query: 512 SLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTV 571
LRRT++ L PK + + +LY +L VV+ + L+ N S
Sbjct: 527 ILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQ--VVRFCLQG--LLEN-SPH 581
Query: 572 LSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICIS 631
L + L+++C + L + ++ S+T D + L K L+ V
Sbjct: 582 LICIGALKKLCNHPCLLFNSIKEKECSSTC-DKNEEKSLYKGLLSVF------------- 627
Query: 632 PPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLK 691
P+D +PLL ++ ES + + K
Sbjct: 628 -PADY-----------------------------NPLLFTE-----KESGKLQVLSK--- 649
Query: 692 NFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAK 751
LL ++ +LR PT K V+ S + + L +L+E + G+ RLDG
Sbjct: 650 ---------LLAVIHELR---PTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPIS 697
Query: 752 KRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHR 811
+R Q+++ F N + L S KA G G+NL S + L + WNPA + QAM RV R
Sbjct: 698 QRQQIVDGF-NSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWR 756
Query: 812 IGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFR-RKGKDQREVSTDDLRILMSL 869
GQK V I RL+ +IEE+I + Q K+ L K + + S ++L+ L +L
Sbjct: 757 DGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 250 GGIFADDMGLGKTLTLLSLIALDKCAGVAPG 280
G I AD+MGLGKTL +SLI +C G G
Sbjct: 321 GAILADEMGLGKTLQCISLIWTLQCQGPYGG 351
>sp|O10302|GTA_NPVOP Probable global transactivator OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 498
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 18/242 (7%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEES 411
TLIVCP S+ + W + ++H +P L+ + + GD + ++ K V TY TL
Sbjct: 80 TLIVCPLSLLNHWTAEAKKHNLPLNLRQF-HGGDLDESFDDAKA---VAITYDTLRAHHK 135
Query: 412 WLESPVKKI-----EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
++ + W RV+LDEAHVIKN L+A RW +TGTPI N +D
Sbjct: 136 HYKTAGRASGLLARHWHRVVLDEAHVIKNHQTGVHAAACALSADNRWCITGTPIHNRHWD 195
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKG-LSRLQVLMSTISLRRTKDKGLIGLQ 525
+++++ FL+ PF W+ L NR +R++ +++ I L+R K + + +
Sbjct: 196 MYAIIHFLRCRPFDNVGVWRML--------NRNNDTNRIKSVVNKIVLKRNKAEIALDIP 247
Query: 526 PKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNL 585
++ +V E ++Y+EL+ ++ D + + VL +L RLRQ+C +
Sbjct: 248 QHDVQDVHVRFDEAEARVYNELKSASQRAYDDAVASADKAGGMQDVLWLLCRLRQVCCHP 307
Query: 586 AL 587
AL
Sbjct: 308 AL 309
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 15/209 (7%)
Query: 663 LCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQ 722
+C HP L P + + A + SSK L L+ ++ D P K V+ SQ
Sbjct: 303 VCCHPALTKCAAMFPEHAHIFEPA------YESSKCRRALELVQRVLDT-PDDKVVLVSQ 355
Query: 723 FRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGV 782
+ + L L+ L+ G +L G + ++R V +F N VLL S+K G G+
Sbjct: 356 WVEFLQLVAGLLRRRGVPILLYTGQLRVEERTAVENQF-NAADSPYRVLLMSIKCGGVGL 414
Query: 783 NLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIV--RNSIEERILELQDRK 840
NLT + + +LEP WNP +E QA DR+HR+GQK+ + ++IV NSIE + QD+K
Sbjct: 415 NLTGGNHIIMLEPHWNPQIELQAQDRIHRMGQKKRTYVYKMIVDEENSIERYMKARQDKK 474
Query: 841 KKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ F D+ ++ +D++ SL
Sbjct: 475 LTFVNKVF-----DRTALNYEDIKKFFSL 498
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 249 RGGIFADDMGLGKTLTLLSLIALD 272
GG+ ADDMGLGKTL+++ LIA D
Sbjct: 50 HGGVLADDMGLGKTLSVMRLIAND 73
>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp54 PE=1 SV=2
Length = 852
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 113/216 (52%), Gaps = 11/216 (5%)
Query: 663 LCRHP---LLQSDLFSS----PPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTT 715
+C HP L DL PP ++ G+ +N SS +L L L K T
Sbjct: 568 ICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRD-RNIDSSLSGKMLVLERMLYQIKQET 626
Query: 716 --KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773
K V+ S + L L E+ +A G+K LRLDG+MN KR ++++ F +P LL+
Sbjct: 627 DDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLS 686
Query: 774 SLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERI 833
S KA G G+NL A+R+ L +P WNPA ++QA+ RV R GQK+D + R I +IEE+I
Sbjct: 687 S-KAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKI 745
Query: 834 LELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
+ Q K+ L+ +R S D+LR L L
Sbjct: 746 FQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQL 781
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 32/193 (16%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMY--------------D 397
+I CP S+ W +L + + ++ G ++ +EL M
Sbjct: 326 AIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSK--QELIMALQQWASVHGRQVTRP 383
Query: 398 LVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTG 457
+++ +Y TL S++E + E ++ DE H +KN+++ + LN +RR +++G
Sbjct: 384 VLIASYETL---RSYVEH-LNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSG 439
Query: 458 TPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPL-----AQGNRKG-------LSRLQ 505
TPIQN + FSL+ F + ++ + P+ A G K L+ L
Sbjct: 440 TPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELA 499
Query: 506 VLMSTISLRRTKD 518
+++ +RRT D
Sbjct: 500 KIVNRFIIRRTND 512
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 108/194 (55%), Gaps = 12/194 (6%)
Query: 650 ILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLR 709
+L L + CC HP L PP ++D I G S K+ AL LL +++
Sbjct: 453 LLNILMQLRKCC---NHPYLFDGAEPGPPYTTDEHIVG------NSGKMVALDKLLARIK 503
Query: 710 DKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPT 769
++ ++ ++FSQ ++L +LE+ G++ RLDG ++R + I+ F P
Sbjct: 504 EQ--GSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPN-SSKF 560
Query: 770 VLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829
+ + S +A G G+NL +A V L + WNP V+ QAMDR HRIGQK+ V++ RLI N++
Sbjct: 561 IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTV 620
Query: 830 EERILELQDRKKKL 843
EERI+E + K +L
Sbjct: 621 EERIVERAEIKLRL 634
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 17/241 (7%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGD---RTQDVEELKM---YDLVLTTYSTL 406
+++ P S W+ + + VP L+ + GD R + + M +D+ +T+Y +
Sbjct: 240 MVLVPKSTLHNWMNEFK-RWVPS-LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMV 297
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E+S KK W +++DEAH IKN ++ S V + R ++TGTP+QN +
Sbjct: 298 IKEKSVF----KKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHE 353
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQP 526
L++L+ FL + F+ + S G++K + RL ++ LRR K L P
Sbjct: 354 LWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPP 413
Query: 527 KTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLA 586
K K Y+ LS +R+ Y ++ K D +N+ M + +L+IL++LR+ C +
Sbjct: 414 KKEIKIYLGLSKMQREWYTKILMKD----IDVLNSSGKM-DKMRLLNILMQLRKCCNHPY 468
Query: 587 L 587
L
Sbjct: 469 L 469
>sp|P75093|Y020_MYCPN Uncharacterized ATP-dependent helicase MPN_020 OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_020 PE=3
SV=1
Length = 1030
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775
K ++F+QF ++ ++ + G + DG + K R +IE+F N P VLLASL
Sbjct: 880 KIILFTQFIDVIDHFKDTFKEQGIEYFIFDGRKSPKSRHSIIEKFNNAK--NPCVLLASL 937
Query: 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILE 835
KA G G+NLTAA V + WWN AVE QA DR HRIGQK+ V++ R+I +N+IEER+ +
Sbjct: 938 KAGGVGINLTAAEVVIHFDVWWNTAVENQATDRAHRIGQKKTVQVYRIIAKNTIEERVCQ 997
Query: 836 LQDRKKKLA 844
+Q K++L
Sbjct: 998 VQAEKQELV 1006
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 44/248 (17%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEES 411
+LI+ P S+ W ++ E+ +K E ++Y+ + T L + +
Sbjct: 630 SLIIVPASLLLNWKSEFEKFAPQIKVKV-----ANIPSKERGELYEKL--TNEILIVSFN 682
Query: 412 WLESPVKKIEWWR---VILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLF 468
L S VK I R V++DEA IKN ++ ++ + +TGTPI+N DL+
Sbjct: 683 VLRSDVKLITKQRFHYVVIDEAQGIKNDSSSITKAAKKVKGNFCLALTGTPIENRLLDLW 742
Query: 469 SLMAFL-------------QFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRR 515
S F+ QFE + L+QR S LRR
Sbjct: 743 SCFDFVLPSFLGNKKQFTDQFEKEKTDQSFHLLMQR----------------TSPFILRR 786
Query: 516 TKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSIL 575
TK K L L K YVEL+ +KLY+E + ++ + S +L+++
Sbjct: 787 TKSKVLKELPNKITTDIYVELNPMHQKLYEEERDRGLEEIKQIQDKSSF-----NILTLI 841
Query: 576 LRLRQICT 583
L+LR +C+
Sbjct: 842 LKLRHLCS 849
>sp|P47264|Y018_MYCGE Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=MG018 PE=3
SV=3
Length = 1031
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754
+SK +A L ++ + + K K ++F+QF ++ ++ L+ L DG K R
Sbjct: 862 NSKANAALNIIYEALENKR--KVILFTQFLDVIDCFKQTLKNQKIDHLVFDGRKTVKNRN 919
Query: 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ 814
+I++F + P V+LASLKA G G+NLTAA V + WWN AVE QA DR HRIGQ
Sbjct: 920 TIIQKFNSAKE--PCVMLASLKAGGVGINLTAAEVVIHFDVWWNSAVENQATDRAHRIGQ 977
Query: 815 KEDVKIVRLIVRNSIEERILELQDRKKKLAREA 847
+ V++ R+I +N+IEER+ ++Q++K++L ++
Sbjct: 978 SKTVQVYRIIAKNTIEERVCQVQNQKQELVKKT 1010
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 37/264 (14%)
Query: 352 TLIVCPPSVFSTWITQLEEH-------TVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYS 404
+LI+ P S+ W ++ ++ T G K +R+Q E LK ++L +++
Sbjct: 630 SLIIVPASLLLNWKSEFQKFAPHVKIVTANGNFK------ERSQVYESLKN-QILLMSFN 682
Query: 405 TLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGS 464
L + W+ KK + V++DEA IKN N+ ++ + +TGTPI+N
Sbjct: 683 VLRSDIKWISQ--KKFHY--VVIDEAQGIKNENSTVTKAAKKIKGNFCLALTGTPIENRL 738
Query: 465 FDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGL 524
DL+S F+ K + ++ + N + +L S LRRTK+K L L
Sbjct: 739 LDLWSCFDFVLPNFLGNKKQFSDQFEK---EKNDESFQKLMKKTSPFILRRTKNKVLKEL 795
Query: 525 QPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTN 584
K I YVELS E +KLYD+ + +++ S +N +LS++L+LR IC
Sbjct: 796 PKKIITDIYVELSEEHQKLYDKQKTDGLKEIKE-----SDAKNALNILSLILKLRHIC-- 848
Query: 585 LALCPSDVRSIIPSNTIEDVSNNP 608
S++ N + D +N
Sbjct: 849 ---------SLVKDNDVNDFEDNS 863
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila
willistoni GN=okr PE=3 SV=1
Length = 784
Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 1/169 (0%)
Query: 701 LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
LL +L K V+ S + + L L E+ + + +RLDG+M KKR++V++ F
Sbjct: 501 LLDFMLATIRANSDDKVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKVVDRF 560
Query: 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
+P +L+S KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I
Sbjct: 561 NDPENDCFLFMLSS-KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 619
Query: 821 VRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
RL+ SIEE+IL+ Q KK L+ ++ + DDL+ L S
Sbjct: 620 YRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSF 668
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDL----------VLTT 402
+IV P S+ W + + M M G + ++ L+ + + +L +
Sbjct: 214 IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLIS 273
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
Y T I + L + E VI DE H +KN++ + + L KRR +++GTPIQN
Sbjct: 274 YETFRIYANIL----CQNEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 329
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQG 496
+ FSL+ F+ E + ++ + P+ +G
Sbjct: 330 DLTEYFSLVNFVNPEMLGTAADFKRNFENPILKG 363
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 647 RSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLL 706
++ +L + + CC HP L PP ++D + F S K+ L LL
Sbjct: 450 KTRLLNIVMQLRKCC---NHPYLFEGAEPGPPYTTDEHLI------FNSGKMIILDKLLK 500
Query: 707 QLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPG 766
+L++K ++ ++FSQ ++L +LE+ F+ R+DGS + ++R + I+E+ P
Sbjct: 501 RLKEK--GSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPN-S 557
Query: 767 GPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826
V L + +A G G+NL A V L + WNP + QAMDR HRIGQK+ V + R +
Sbjct: 558 EKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTE 617
Query: 827 NSIEERILELQDRKKKL 843
N+IEE+++E +K +L
Sbjct: 618 NAIEEKVIERAAQKLRL 634
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 119/240 (49%), Gaps = 18/240 (7%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELK------MYDLVLTTYSTL 406
LI+ P S W + + T P + + +GD+ + ++ +D+++T+Y +
Sbjct: 237 LIIVPKSTLDNWRREFLKWT-PN-VNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMV 294
Query: 407 AIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466
E++ L K++ W +++DEAH IKN + S+ + +K R ++TGTP+QN +
Sbjct: 295 IREKNAL----KRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHE 350
Query: 467 LFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRK-GLSRLQVLMSTISLRRTKDKGLIGLQ 525
L++L+ FL + F + ++ ++ +++ + +L +++ LRR K L
Sbjct: 351 LWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLL 410
Query: 526 PKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST-VLSILLRLRQICTN 584
PK YV ++ + + Y L K D +N R T +L+I+++LR+ C +
Sbjct: 411 PKIETNVYVGMTDMQIQWYKSLLEKDI----DAVNGAVGKREGKTRLLNIVMQLRKCCNH 466
>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
pseudoobscura pseudoobscura GN=okr PE=3 SV=2
Length = 782
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 1/169 (0%)
Query: 701 LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
LL +L K V+ S + + L L E+ + + +RLDG+M+ KKR++V++ F
Sbjct: 501 LLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRF 560
Query: 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
+P +L+S KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I
Sbjct: 561 NDPESDCFLFMLSS-KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 619
Query: 821 VRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
RL+ SIEE+IL+ Q KK L+ ++ + DDL+ L S
Sbjct: 620 YRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSF 668
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 353 LIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDL----------VLTT 402
+IV P S+ W + + M M G + V L+ + + +L +
Sbjct: 213 IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLIS 272
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
Y T I L K E VI DE H +KN++ + + L KRR +++GTPIQN
Sbjct: 273 YETFRIYAEIL----CKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 328
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLS---RLQVLMSTISLRRTKDK 519
+ FSL+ F+ E + ++ + + +G + R + L T L + D+
Sbjct: 329 DLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQ 388
Query: 520 GLIGLQPKTIEKY 532
+I + + KY
Sbjct: 389 CIIRRTNQILTKY 401
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Query: 701 LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
LL +L K V+ S + + L L E+ + + +RLDG+M+ KKR++V+++F
Sbjct: 506 LLDFMLAAIRAAGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKF 565
Query: 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
+P +L+S KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I
Sbjct: 566 NDPDSECFLFMLSS-KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 624
Query: 821 VRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
RL+ +IEE+IL+ Q KK L+ ++ + DDL+ L S
Sbjct: 625 YRLVASGTIEEKILQRQTHKKSLSSTIIDNNESSEKHFTRDDLKDLFSF 673
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 34/257 (13%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDL---------VLTT 402
++V P S+ W + + +L M G + + L+ + + +L +
Sbjct: 219 AIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLIS 278
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
Y T I L K E VI DE H +KN++ + + L KRR +++GTPIQN
Sbjct: 279 YETFRIYAEIL----CKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 334
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN---------RKGLSRLQVLMSTIS- 512
+ FSL+ F+ E + ++ + + +G +K + + Q L+ +
Sbjct: 335 DLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQ 394
Query: 513 --LRRTKDKGLIGLQPKTIEKYY-VELSLEERKLYDEL--EGKAKGVVQDYINAGSLMRN 567
+RRT ++ L P E V+L+ + +LY + + + D SL
Sbjct: 395 CIIRRT-NQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNSDQVRRSLADCNEKASL--- 450
Query: 568 YSTVLSILLRLRQICTN 584
T L+ + L++IC++
Sbjct: 451 --TALADITTLKKICSH 465
>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila
melanogaster GN=okr PE=1 SV=1
Length = 784
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Query: 701 LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760
LL +L + K V+ S + + L L E+ + + +RLDG+M+ KKR++V++ F
Sbjct: 503 LLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRF 562
Query: 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820
+P +L+S KA G G+NL A+R+F+ +P WNPA +EQAM RV R GQK+ I
Sbjct: 563 NDPESDSFLFMLSS-KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 621
Query: 821 VRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869
RL+ SIEE+IL+ Q KK L+ ++ + DDL+ L +
Sbjct: 622 YRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFTF 670
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDL---------VLTT 402
++V P S+ W + + +L M G + + L+ + + +L +
Sbjct: 216 AIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLIS 275
Query: 403 YSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462
Y T I L K E VI DE H +KN++ + + L KRR +++GTPIQN
Sbjct: 276 YETFRIYAEIL----CKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 331
Query: 463 GSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQG 496
+ +SL+ F+ E + ++ + + +G
Sbjct: 332 DLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRG 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,208,317
Number of Sequences: 539616
Number of extensions: 13652198
Number of successful extensions: 45682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 646
Number of HSP's that attempted gapping in prelim test: 43679
Number of HSP's gapped (non-prelim): 2091
length of query: 869
length of database: 191,569,459
effective HSP length: 126
effective length of query: 743
effective length of database: 123,577,843
effective search space: 91818337349
effective search space used: 91818337349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)