Query 002901
Match_columns 869
No_of_seqs 460 out of 2744
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 3.1E-79 1.1E-83 731.0 34.3 499 194-869 49-570 (644)
2 3mwy_W Chromo domain-containin 100.0 4.5E-77 1.5E-81 729.7 32.2 483 192-868 228-731 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 1.8E-75 6.1E-80 682.6 32.3 462 194-869 31-495 (500)
4 3dmq_A RNA polymerase-associat 100.0 6E-52 2.1E-56 514.5 21.0 425 196-844 149-632 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 7.9E-46 2.7E-50 429.0 29.3 443 199-845 8-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 1.5E-44 5E-49 384.2 20.7 254 511-869 12-266 (271)
7 2fwr_A DNA repair protein RAD2 100.0 6.1E-40 2.1E-44 379.6 14.5 377 198-844 91-471 (472)
8 4a2w_A RIG-I, retinoic acid in 100.0 4.6E-36 1.6E-40 371.9 30.8 150 694-851 611-772 (936)
9 4a2p_A RIG-I, retinoic acid in 100.0 2.5E-36 8.5E-41 356.5 25.9 150 694-851 370-531 (556)
10 3tbk_A RIG-I helicase domain; 100.0 4.5E-36 1.6E-40 353.9 25.1 150 694-851 369-530 (555)
11 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-35 6E-40 362.9 31.0 150 694-851 611-772 (797)
12 2oca_A DAR protein, ATP-depend 100.0 1.1E-33 3.6E-38 330.6 26.7 349 198-831 111-462 (510)
13 2ykg_A Probable ATP-dependent 100.0 6.1E-33 2.1E-37 336.6 25.0 147 694-849 378-537 (696)
14 4gl2_A Interferon-induced heli 100.0 1.3E-32 4.3E-37 334.0 25.7 149 694-850 379-542 (699)
15 3h1t_A Type I site-specific re 100.0 4.7E-30 1.6E-34 304.9 20.9 126 697-824 421-558 (590)
16 1hv8_A Putative ATP-dependent 100.0 2.2E-29 7.6E-34 280.4 24.5 124 695-829 224-347 (367)
17 1xti_A Probable ATP-dependent 100.0 1.1E-28 3.9E-33 277.5 29.4 123 695-827 235-357 (391)
18 2z0m_A 337AA long hypothetical 100.0 4.6E-29 1.6E-33 274.6 19.4 117 712-837 218-334 (337)
19 3hgt_A HDA1 complex subunit 3; 100.0 3E-28 1E-32 257.9 22.6 220 523-838 19-248 (328)
20 2j0s_A ATP-dependent RNA helic 100.0 1.2E-27 4.1E-32 271.2 28.3 123 696-828 262-384 (410)
21 1s2m_A Putative ATP-dependent 100.0 1.1E-27 3.7E-32 270.5 27.4 124 695-828 243-366 (400)
22 3pey_A ATP-dependent RNA helic 100.0 1.5E-26 5.2E-31 260.2 28.8 122 696-827 229-356 (395)
23 3eiq_A Eukaryotic initiation f 99.9 2.7E-27 9.1E-32 268.5 21.2 123 695-827 265-387 (414)
24 1fuu_A Yeast initiation factor 99.9 1.6E-28 5.4E-33 276.6 10.7 108 714-827 259-366 (394)
25 2db3_A ATP-dependent RNA helic 99.9 8.4E-26 2.9E-30 257.8 26.7 121 695-826 286-406 (434)
26 3fht_A ATP-dependent RNA helic 99.9 7.3E-25 2.5E-29 248.1 32.6 122 695-826 251-378 (412)
27 2i4i_A ATP-dependent RNA helic 99.9 2E-25 6.8E-30 253.4 23.2 125 695-828 260-384 (417)
28 1oyw_A RECQ helicase, ATP-depe 99.9 2.6E-24 8.9E-29 250.5 24.7 117 696-820 222-338 (523)
29 3oiy_A Reverse gyrase helicase 99.9 7E-24 2.4E-28 240.7 24.5 115 696-824 239-362 (414)
30 2v1x_A ATP-dependent DNA helic 99.9 1.4E-23 4.6E-28 247.0 24.3 118 697-821 253-370 (591)
31 2eyq_A TRCF, transcription-rep 99.9 1.2E-23 4.1E-28 264.3 24.0 108 714-827 812-922 (1151)
32 3fho_A ATP-dependent RNA helic 99.9 1.8E-24 6.2E-29 251.6 13.4 122 695-826 342-469 (508)
33 3sqw_A ATP-dependent RNA helic 99.9 4.1E-23 1.4E-27 244.4 24.7 110 712-827 286-398 (579)
34 3i5x_A ATP-dependent RNA helic 99.9 2.5E-22 8.7E-27 237.1 26.3 110 712-827 337-449 (563)
35 3fmp_B ATP-dependent RNA helic 99.9 2.1E-23 7.3E-28 241.3 15.5 120 697-826 320-445 (479)
36 2xgj_A ATP-dependent RNA helic 99.9 1.2E-21 4.1E-26 242.7 30.2 125 696-828 329-500 (1010)
37 2l1i_A HLTF protein; hiran dom 99.9 1.3E-24 4.3E-29 196.9 -3.4 116 25-142 7-122 (122)
38 1gm5_A RECG; helicase, replica 99.9 1.6E-22 5.3E-27 243.0 10.4 90 727-820 599-692 (780)
39 2p6r_A Afuhel308 helicase; pro 99.9 6.5E-21 2.2E-25 230.6 22.0 114 714-831 242-392 (702)
40 2zj8_A DNA helicase, putative 99.9 1.2E-20 4.2E-25 228.8 23.7 114 714-831 237-391 (720)
41 2va8_A SSO2462, SKI2-type heli 99.9 6.9E-20 2.4E-24 222.3 28.5 111 714-828 252-409 (715)
42 3l9o_A ATP-dependent RNA helic 99.8 4.2E-20 1.4E-24 230.9 24.1 131 695-833 426-603 (1108)
43 4a4z_A Antiviral helicase SKI2 99.8 2E-19 6.7E-24 222.9 27.1 130 695-833 321-498 (997)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.5E-19 5.2E-24 222.6 21.5 106 714-824 537-706 (1038)
45 1rif_A DAR protein, DNA helica 99.8 1.6E-19 5.3E-24 193.7 14.1 165 199-476 112-278 (282)
46 4ddu_A Reverse gyrase; topoiso 99.8 7E-18 2.4E-22 210.8 26.4 87 697-797 297-388 (1104)
47 1gku_B Reverse gyrase, TOP-RG; 99.8 1.3E-17 4.4E-22 208.5 22.5 117 714-841 275-466 (1054)
48 1t5i_A C_terminal domain of A 99.7 8.6E-17 2.9E-21 158.8 14.3 123 694-826 15-137 (172)
49 2hjv_A ATP-dependent RNA helic 99.7 8.4E-17 2.9E-21 157.5 13.6 125 693-827 18-142 (163)
50 2jgn_A DBX, DDX3, ATP-dependen 99.7 4.4E-17 1.5E-21 162.9 11.0 126 693-827 28-153 (185)
51 2fz4_A DNA repair protein RAD2 99.7 7.2E-17 2.5E-21 168.0 12.2 141 197-463 90-232 (237)
52 2p6n_A ATP-dependent RNA helic 99.7 2.1E-16 7.1E-21 158.7 12.1 123 694-827 39-161 (191)
53 1fuk_A Eukaryotic initiation f 99.6 5.1E-16 1.7E-20 152.2 12.1 124 696-829 16-139 (165)
54 3k2y_A Uncharacterized protein 99.6 5E-16 1.7E-20 137.3 9.9 89 29-122 6-100 (109)
55 2v6i_A RNA helicase; membrane, 99.6 5.1E-16 1.8E-20 176.3 12.8 99 714-821 171-287 (431)
56 2rb4_A ATP-dependent RNA helic 99.6 2.6E-15 9E-20 148.6 13.6 124 695-828 19-148 (175)
57 4f92_B U5 small nuclear ribonu 99.6 2.4E-14 8.1E-19 185.4 23.2 84 739-827 1214-1308(1724)
58 2jlq_A Serine protease subunit 99.6 2E-15 6.8E-20 172.5 11.6 94 714-816 188-301 (451)
59 2yjt_D ATP-dependent RNA helic 99.4 8.4E-17 2.9E-21 158.7 0.0 118 695-820 15-132 (170)
60 4f92_B U5 small nuclear ribonu 99.6 3.4E-14 1.2E-18 184.0 23.0 86 739-828 379-474 (1724)
61 1yks_A Genome polyprotein [con 99.6 8.4E-15 2.9E-19 166.6 15.3 101 714-824 177-296 (440)
62 3eaq_A Heat resistant RNA depe 99.6 1.1E-14 3.7E-19 148.9 13.8 125 693-827 14-138 (212)
63 1qde_A EIF4A, translation init 99.6 1.8E-14 6.2E-19 148.5 14.4 110 349-460 82-197 (224)
64 2z83_A Helicase/nucleoside tri 99.6 7E-15 2.4E-19 168.3 12.1 104 714-827 190-313 (459)
65 1t6n_A Probable ATP-dependent 99.6 9.1E-15 3.1E-19 150.3 11.3 157 200-461 36-202 (220)
66 2oxc_A Probable ATP-dependent 99.6 2.4E-14 8.3E-19 148.3 14.1 109 349-459 92-208 (230)
67 3b6e_A Interferon-induced heli 99.6 4.4E-15 1.5E-19 151.9 8.4 159 198-458 31-216 (216)
68 1tf5_A Preprotein translocase 99.5 4.1E-13 1.4E-17 158.5 25.6 115 694-816 414-536 (844)
69 2xau_A PRE-mRNA-splicing facto 99.5 1.2E-14 4.1E-19 175.8 12.7 114 712-829 301-445 (773)
70 2pl3_A Probable ATP-dependent 99.5 1.5E-14 5.1E-19 150.5 11.4 111 349-460 97-213 (236)
71 2wv9_A Flavivirin protease NS2 99.5 1.9E-14 6.4E-19 170.9 13.2 91 714-813 410-520 (673)
72 2gxq_A Heat resistant RNA depe 99.5 3.5E-14 1.2E-18 144.3 12.8 108 349-460 72-186 (207)
73 2whx_A Serine protease/ntpase/ 99.5 3.5E-14 1.2E-18 167.5 13.7 102 714-825 355-476 (618)
74 3o8b_A HCV NS3 protease/helica 99.5 2.7E-13 9.3E-18 158.7 19.5 99 714-828 396-515 (666)
75 1nkt_A Preprotein translocase 99.5 3E-12 1E-16 151.0 27.8 123 694-826 442-616 (922)
76 3rc3_A ATP-dependent RNA helic 99.5 2.4E-13 8.2E-18 160.9 18.4 108 716-826 322-444 (677)
77 2fsf_A Preprotein translocase 99.5 7.5E-13 2.6E-17 155.8 21.7 115 694-816 423-574 (853)
78 1vec_A ATP-dependent RNA helic 99.5 1.2E-13 4E-18 140.4 13.0 156 200-460 25-188 (206)
79 1q0u_A Bstdead; DEAD protein, 99.5 9.2E-14 3.2E-18 142.7 12.3 108 350-459 73-191 (219)
80 3i32_A Heat resistant RNA depe 99.5 2.2E-13 7.7E-18 145.9 14.4 126 693-828 11-136 (300)
81 3bor_A Human initiation factor 99.5 2.7E-13 9.2E-18 141.1 13.4 109 350-460 99-215 (237)
82 1wrb_A DJVLGB; RNA helicase, D 99.4 1.6E-13 5.3E-18 144.4 10.0 110 349-460 100-220 (253)
83 3ber_A Probable ATP-dependent 99.4 2.4E-13 8.1E-18 142.6 9.5 110 350-460 112-228 (249)
84 3dkp_A Probable ATP-dependent 99.4 7.9E-13 2.7E-17 138.2 12.9 110 350-459 99-220 (245)
85 1c4o_A DNA nucleotide excision 99.4 2.5E-10 8.7E-15 135.9 32.7 125 695-828 422-551 (664)
86 3iuy_A Probable ATP-dependent 99.3 3.7E-12 1.3E-16 131.5 12.3 108 349-459 94-208 (228)
87 3jux_A Protein translocase sub 99.3 3.2E-10 1.1E-14 131.0 27.2 124 693-826 455-586 (822)
88 3ly5_A ATP-dependent RNA helic 99.3 8.8E-12 3E-16 131.6 10.3 111 349-460 126-243 (262)
89 3fe2_A Probable ATP-dependent 99.3 9.9E-12 3.4E-16 129.6 10.2 109 349-459 102-217 (242)
90 3fmo_B ATP-dependent RNA helic 99.1 4.2E-10 1.5E-14 121.1 15.4 109 351-460 164-278 (300)
91 2vl7_A XPD; helicase, unknown 99.0 3.2E-08 1.1E-12 115.3 22.7 111 699-819 370-515 (540)
92 2d7d_A Uvrabc system protein B 98.9 6.8E-09 2.3E-13 123.6 16.1 125 695-828 428-557 (661)
93 2ipc_A Preprotein translocase 98.7 1.1E-06 3.8E-11 103.8 21.9 103 351-469 122-237 (997)
94 3crv_A XPD/RAD3 related DNA he 98.4 5.4E-07 1.8E-11 105.3 10.4 89 698-797 378-473 (551)
95 2ecy_A TNF receptor-associated 98.3 2.6E-07 9E-12 74.8 4.1 52 622-673 14-65 (66)
96 3llm_A ATP-dependent RNA helic 98.3 5.7E-07 1.9E-11 92.9 6.9 105 350-461 110-220 (235)
97 1t1h_A Gspef-atpub14, armadill 98.3 4.7E-07 1.6E-11 76.0 4.6 52 622-673 7-58 (78)
98 3lrq_A E3 ubiquitin-protein li 98.2 1.2E-06 3.9E-11 77.4 5.5 52 623-674 22-74 (100)
99 2kre_A Ubiquitin conjugation f 98.2 1.4E-06 4.7E-11 76.7 5.7 52 622-674 28-79 (100)
100 2djb_A Polycomb group ring fin 98.2 1.5E-06 5.1E-11 71.6 5.3 54 623-677 15-69 (72)
101 2ysl_A Tripartite motif-contai 98.2 1.4E-06 4.8E-11 72.0 4.8 51 622-672 19-71 (73)
102 2kr4_A Ubiquitin conjugation f 98.1 1.2E-06 4E-11 74.8 3.8 51 622-673 13-63 (85)
103 1g25_A CDK-activating kinase a 98.1 1.3E-06 4.3E-11 70.5 3.6 54 622-675 2-60 (65)
104 1wgm_A Ubiquitin conjugation f 98.1 1.7E-06 6E-11 75.7 4.4 52 622-674 21-73 (98)
105 2ecw_A Tripartite motif-contai 98.1 2.9E-06 9.8E-11 72.3 5.5 53 622-674 18-75 (85)
106 2xeu_A Ring finger protein 4; 98.1 1.2E-06 4E-11 70.3 2.7 52 622-674 2-60 (64)
107 2d8t_A Dactylidin, ring finger 98.1 1.3E-06 4.5E-11 71.8 3.0 53 621-674 13-65 (71)
108 2ct2_A Tripartite motif protei 98.1 2.1E-06 7.3E-11 73.7 4.5 56 622-677 14-75 (88)
109 2yur_A Retinoblastoma-binding 98.1 2.3E-06 7.8E-11 70.9 4.4 51 622-672 14-66 (74)
110 2ecv_A Tripartite motif-contai 98.0 4.1E-06 1.4E-10 71.3 5.4 53 622-674 18-75 (85)
111 1e4u_A Transcriptional repress 98.0 5.4E-06 1.8E-10 69.2 5.9 54 621-674 9-66 (78)
112 2egp_A Tripartite motif-contai 98.0 1.4E-06 4.8E-11 73.2 2.3 52 622-673 11-68 (79)
113 3fl2_A E3 ubiquitin-protein li 98.0 2.6E-06 9E-11 78.4 4.3 48 623-670 52-99 (124)
114 3ng2_A RNF4, snurf, ring finge 98.0 2.3E-06 7.8E-11 70.2 3.0 54 620-674 7-67 (71)
115 3ztg_A E3 ubiquitin-protein li 98.0 7.6E-06 2.6E-10 70.9 6.1 48 622-669 12-61 (92)
116 2csy_A Zinc finger protein 183 98.0 4.2E-06 1.4E-10 70.7 4.2 47 622-669 14-60 (81)
117 1z6u_A NP95-like ring finger p 98.0 3.9E-06 1.3E-10 79.8 4.4 49 623-671 78-126 (150)
118 2ckl_B Ubiquitin ligase protei 98.0 3.9E-06 1.3E-10 81.4 4.4 48 623-670 54-102 (165)
119 1jm7_A BRCA1, breast cancer ty 98.0 7.3E-06 2.5E-10 73.9 5.8 52 623-674 21-74 (112)
120 2c2l_A CHIP, carboxy terminus 98.0 3.3E-06 1.1E-10 89.6 4.0 52 622-673 207-258 (281)
121 2f42_A STIP1 homology and U-bo 98.0 3.2E-06 1.1E-10 82.0 3.3 53 622-674 105-157 (179)
122 2ect_A Ring finger protein 126 97.9 7.1E-06 2.4E-10 68.6 5.0 58 621-679 13-73 (78)
123 2ecm_A Ring finger and CHY zin 97.9 7.1E-06 2.4E-10 63.5 4.5 48 621-669 3-54 (55)
124 4ayc_A E3 ubiquitin-protein li 97.9 4.5E-06 1.5E-10 78.3 3.9 47 623-670 53-99 (138)
125 2ysj_A Tripartite motif-contai 97.9 6.7E-06 2.3E-10 65.7 4.3 43 622-664 19-63 (63)
126 2y43_A E3 ubiquitin-protein li 97.9 1E-05 3.5E-10 71.2 5.6 48 623-671 22-70 (99)
127 3hct_A TNF receptor-associated 97.9 4.7E-06 1.6E-10 75.9 3.0 51 622-672 17-67 (118)
128 1v87_A Deltex protein 2; ring- 97.9 3.1E-06 1.1E-10 76.6 1.7 61 610-670 12-94 (114)
129 2ea6_A Ring finger protein 4; 97.9 5.7E-06 1.9E-10 67.3 3.1 47 622-669 14-67 (69)
130 2ecn_A Ring finger protein 141 97.9 4.5E-06 1.5E-10 68.3 2.4 50 622-673 14-63 (70)
131 2yu4_A E3 SUMO-protein ligase 97.9 7.6E-06 2.6E-10 71.2 3.6 52 622-673 6-66 (94)
132 1rmd_A RAG1; V(D)J recombinati 97.8 8.6E-06 2.9E-10 73.9 4.1 51 623-673 23-73 (116)
133 2ecj_A Tripartite motif-contai 97.8 1.2E-05 4.3E-10 62.8 4.5 43 622-664 14-58 (58)
134 2y1n_A E3 ubiquitin-protein li 97.8 7.2E-06 2.5E-10 88.9 3.9 55 623-677 332-386 (389)
135 1jm7_B BARD1, BRCA1-associated 97.8 1.9E-05 6.4E-10 71.8 5.6 46 623-671 22-68 (117)
136 1bor_A Transcription factor PM 97.8 8.6E-06 2.9E-10 63.3 2.7 46 621-670 4-49 (56)
137 1chc_A Equine herpes virus-1 r 97.8 1.7E-05 5.8E-10 64.3 4.6 48 622-670 4-52 (68)
138 3l11_A E3 ubiquitin-protein li 97.8 5.6E-06 1.9E-10 75.1 1.7 47 623-669 15-61 (115)
139 1iym_A EL5; ring-H2 finger, ub 97.8 2.2E-05 7.6E-10 60.6 4.6 47 622-669 4-54 (55)
140 2ckl_A Polycomb group ring fin 97.8 1.2E-05 4.3E-10 71.8 3.6 49 622-671 14-63 (108)
141 2ep4_A Ring finger protein 24; 97.7 2.3E-05 7.8E-10 64.8 4.7 50 621-671 13-65 (74)
142 2kiz_A E3 ubiquitin-protein li 97.6 3.8E-05 1.3E-09 62.4 4.4 49 621-670 12-63 (69)
143 1x4j_A Ring finger protein 38; 97.6 2.2E-05 7.6E-10 65.1 2.8 48 622-670 22-72 (75)
144 3knv_A TNF receptor-associated 97.6 8.4E-06 2.9E-10 76.6 -0.0 49 622-670 30-78 (141)
145 2l0b_A E3 ubiquitin-protein li 97.6 2.6E-05 9E-10 67.3 2.7 48 622-670 39-89 (91)
146 2vje_A E3 ubiquitin-protein li 97.5 4.3E-05 1.5E-09 61.1 3.2 49 620-669 5-56 (64)
147 3hcs_A TNF receptor-associated 97.5 3.8E-05 1.3E-09 74.8 3.1 51 622-672 17-67 (170)
148 2ecg_A Baculoviral IAP repeat- 97.5 6.9E-05 2.4E-09 62.0 3.9 43 623-670 25-68 (75)
149 2bay_A PRE-mRNA splicing facto 97.5 7.2E-05 2.5E-09 59.0 3.8 54 623-677 3-57 (61)
150 3htk_C E3 SUMO-protein ligase 97.5 3.8E-05 1.3E-09 78.1 2.4 53 622-674 180-236 (267)
151 4ic3_A E3 ubiquitin-protein li 97.5 5.2E-05 1.8E-09 62.6 2.8 43 623-670 24-67 (74)
152 2vje_B MDM4 protein; proto-onc 97.4 5.7E-05 2E-09 60.1 2.5 46 623-669 7-55 (63)
153 2ecl_A Ring-box protein 2; RNF 97.4 8.3E-05 2.9E-09 62.5 3.6 49 621-670 13-76 (81)
154 2ea5_A Cell growth regulator w 97.4 0.00014 4.7E-09 58.9 4.6 45 621-670 13-58 (68)
155 4a15_A XPD helicase, ATP-depen 97.4 4.6E-05 1.6E-09 89.8 2.1 115 698-820 433-579 (620)
156 4ap4_A E3 ubiquitin ligase RNF 97.3 7.4E-05 2.5E-09 69.3 2.7 54 621-675 5-65 (133)
157 2yho_A E3 ubiquitin-protein li 97.2 0.00014 4.8E-09 60.8 2.9 43 624-671 19-62 (79)
158 3dpl_R Ring-box protein 1; ubi 97.1 0.00035 1.2E-08 61.7 4.6 47 622-669 36-100 (106)
159 1wim_A KIAA0161 protein; ring 97.1 0.00014 4.7E-09 63.1 1.5 50 621-670 3-66 (94)
160 4b3f_X DNA-binding protein smu 97.1 0.0013 4.5E-08 78.1 10.4 63 393-462 340-402 (646)
161 4ap4_A E3 ubiquitin ligase RNF 96.9 0.00032 1.1E-08 64.9 2.1 53 621-674 70-129 (133)
162 3t6p_A Baculoviral IAP repeat- 96.8 0.00036 1.2E-08 75.3 2.0 44 622-670 294-338 (345)
163 2d8s_A Cellular modulator of i 96.7 0.002 6.7E-08 53.7 5.5 51 622-672 14-72 (80)
164 2gk6_A Regulator of nonsense t 96.6 0.0057 2E-07 72.1 10.4 60 393-462 317-376 (624)
165 4a0k_B E3 ubiquitin-protein li 96.5 0.00046 1.6E-08 61.9 0.5 47 622-669 47-111 (117)
166 2wjy_A Regulator of nonsense t 96.2 0.01 3.6E-07 71.6 9.8 60 393-462 493-552 (800)
167 2xzl_A ATP-dependent helicase 96.0 0.01 3.6E-07 71.7 8.2 59 393-462 496-554 (802)
168 3e1s_A Exodeoxyribonuclease V, 95.8 0.017 5.7E-07 67.2 8.8 42 420-463 278-319 (574)
169 3vk6_A E3 ubiquitin-protein li 95.6 0.0083 2.8E-07 51.0 3.6 48 625-672 3-51 (101)
170 3upu_A ATP-dependent DNA helic 93.9 0.19 6.3E-06 56.8 10.4 39 421-462 128-167 (459)
171 3k1l_B Fancl; UBC, ring, RWD, 93.5 0.021 7.1E-07 60.0 1.5 49 622-670 307-373 (381)
172 1w36_D RECD, exodeoxyribonucle 93.5 0.11 3.9E-06 60.7 8.0 44 421-466 262-305 (608)
173 3lfu_A DNA helicase II; SF1 he 93.4 3.4 0.00012 48.4 20.8 38 421-461 213-251 (647)
174 2ct0_A Non-SMC element 1 homol 93.2 0.16 5.4E-06 41.3 5.9 48 623-670 15-64 (74)
175 1vyx_A ORF K3, K3RING; zinc-bi 93.1 0.047 1.6E-06 42.5 2.6 50 620-669 3-58 (60)
176 2o0j_A Terminase, DNA packagin 92.9 0.32 1.1E-05 53.1 9.9 44 418-462 270-316 (385)
177 2orw_A Thymidine kinase; TMTK, 92.8 0.16 5.4E-06 49.6 6.6 35 421-458 76-111 (184)
178 2j9r_A Thymidine kinase; TK1, 92.4 0.21 7.3E-06 49.6 6.9 35 421-458 101-136 (214)
179 4a15_A XPD helicase, ATP-depen 90.8 0.57 1.9E-05 54.8 9.4 43 393-435 173-218 (620)
180 3cpe_A Terminase, DNA packagin 90.1 0.64 2.2E-05 54.1 9.0 44 418-462 270-316 (592)
181 2b8t_A Thymidine kinase; deoxy 89.9 0.1 3.6E-06 52.5 1.8 36 420-458 88-124 (223)
182 2orv_A Thymidine kinase; TP4A 88.6 0.55 1.9E-05 47.2 5.9 34 421-458 90-124 (234)
183 1xx6_A Thymidine kinase; NESG, 88.2 0.54 1.8E-05 46.0 5.5 35 421-458 81-116 (191)
184 3vkw_A Replicase large subunit 87.8 0.77 2.6E-05 50.9 7.0 85 351-461 186-271 (446)
185 1a5t_A Delta prime, HOLB; zinc 84.8 4.7 0.00016 42.9 11.3 47 201-273 3-49 (334)
186 3crv_A XPD/RAD3 related DNA he 83.2 7.3 0.00025 44.7 12.8 85 350-435 48-187 (551)
187 2d7d_A Uvrabc system protein B 83.1 2.3 7.9E-05 50.1 8.5 24 350-373 58-82 (661)
188 3e2i_A Thymidine kinase; Zn-bi 82.0 1.9 6.5E-05 42.7 6.1 34 421-457 101-135 (219)
189 2chg_A Replication factor C sm 80.3 8 0.00027 37.5 10.3 22 250-271 40-61 (226)
190 1iqp_A RFCS; clamp loader, ext 79.1 5.1 0.00017 42.0 8.9 60 421-480 110-170 (327)
191 1w4r_A Thymidine kinase; type 77.8 0.78 2.7E-05 44.8 1.7 33 422-458 92-125 (195)
192 3u61_B DNA polymerase accessor 77.6 8 0.00027 40.7 9.9 60 421-480 105-166 (324)
193 3eie_A Vacuolar protein sortin 75.9 4.4 0.00015 42.9 7.2 24 248-271 51-74 (322)
194 2ko5_A Ring finger protein Z; 75.7 3.6 0.00012 34.3 4.8 52 623-676 28-79 (99)
195 3syl_A Protein CBBX; photosynt 74.1 1.8 6E-05 45.5 3.4 24 249-272 68-91 (309)
196 1l8q_A Chromosomal replication 71.3 10 0.00035 39.8 8.7 24 249-272 38-61 (324)
197 1njg_A DNA polymerase III subu 70.9 13 0.00045 36.4 9.0 23 250-272 47-69 (250)
198 2p65_A Hypothetical protein PF 70.9 4.4 0.00015 38.2 5.2 25 249-273 44-68 (187)
199 3bos_A Putative DNA replicatio 68.8 12 0.0004 37.0 8.1 24 249-272 53-76 (242)
200 2l82_A Designed protein OR32; 68.4 19 0.00066 30.5 7.7 48 716-763 4-51 (162)
201 3nw0_A Non-structural maintena 68.0 9.4 0.00032 38.4 7.0 65 606-670 160-229 (238)
202 2lbm_A Transcriptional regulat 67.6 7.7 0.00026 35.5 5.6 70 620-711 60-139 (142)
203 2jun_A Midline-1; B-BOX, TRIM, 66.8 3.2 0.00011 35.6 2.8 32 622-653 2-36 (101)
204 3ipz_A Monothiol glutaredoxin- 66.5 29 0.00098 29.9 9.1 57 714-772 17-79 (109)
205 1gm5_A RECG; helicase, replica 65.3 20 0.0007 42.7 10.4 96 692-792 397-496 (780)
206 2qp9_X Vacuolar protein sortin 64.8 7 0.00024 42.0 5.7 24 248-271 84-107 (355)
207 2z4s_A Chromosomal replication 61.7 32 0.0011 38.0 10.5 24 249-272 131-154 (440)
208 3zyw_A Glutaredoxin-3; metal b 61.3 37 0.0013 29.4 8.8 57 714-772 15-77 (111)
209 1weo_A Cellulose synthase, cat 61.1 10 0.00035 31.3 4.5 50 621-670 14-70 (93)
210 2zan_A Vacuolar protein sortin 60.9 12 0.0004 41.7 6.8 25 248-272 167-191 (444)
211 2chq_A Replication factor C sm 60.6 9.1 0.00031 39.8 5.6 58 420-480 101-162 (319)
212 2cs3_A Protein C14ORF4, MY039 58.4 8.8 0.0003 30.9 3.6 37 621-657 13-53 (93)
213 3gx8_A Monothiol glutaredoxin- 57.4 41 0.0014 29.6 8.6 57 714-772 15-80 (121)
214 2yan_A Glutaredoxin-3; oxidore 53.5 60 0.002 27.4 8.8 49 714-762 16-70 (105)
215 3lte_A Response regulator; str 53.0 39 0.0013 29.2 7.8 29 714-742 6-34 (132)
216 2qby_B CDC6 homolog 3, cell di 50.3 30 0.001 36.9 7.8 24 249-272 46-69 (384)
217 1u6t_A SH3 domain-binding glut 50.3 23 0.00077 31.5 5.4 45 717-761 2-53 (121)
218 2wem_A Glutaredoxin-related pr 50.2 61 0.0021 28.4 8.4 57 714-772 19-82 (118)
219 2lqo_A Putative glutaredoxin R 50.0 43 0.0015 27.9 7.0 58 714-772 3-61 (92)
220 1sxj_C Activator 1 40 kDa subu 49.9 80 0.0027 33.1 11.0 22 251-272 49-70 (340)
221 3cg4_A Response regulator rece 47.6 91 0.0031 27.1 9.5 28 714-741 7-34 (142)
222 3oiy_A Reverse gyrase helicase 47.6 54 0.0018 35.4 9.4 82 692-778 44-128 (414)
223 2wul_A Glutaredoxin related pr 47.2 1.1E+02 0.0036 26.9 9.4 58 715-774 20-84 (118)
224 3a10_A Response regulator; pho 45.8 49 0.0017 27.7 7.1 89 714-810 25-115 (116)
225 3vfd_A Spastin; ATPase, microt 45.1 16 0.00054 39.6 4.4 24 248-271 148-171 (389)
226 2wci_A Glutaredoxin-4; redox-a 45.0 78 0.0027 28.5 8.4 56 715-772 35-96 (135)
227 1t6n_A Probable ATP-dependent 44.9 1.2E+02 0.004 29.1 10.6 97 692-794 59-166 (220)
228 1t1v_A SH3BGRL3, SH3 domain-bi 44.4 61 0.0021 26.6 7.2 57 716-772 3-66 (93)
229 1ri9_A FYN-binding protein; SH 43.7 21 0.00071 30.5 3.8 37 45-86 59-95 (102)
230 2r2a_A Uncharacterized protein 43.6 12 0.00042 36.4 2.9 37 423-459 89-132 (199)
231 3pvs_A Replication-associated 43.0 22 0.00076 39.4 5.3 23 249-271 51-73 (447)
232 3ber_A Probable ATP-dependent 42.4 1.5E+02 0.005 29.4 11.0 94 692-792 88-192 (249)
233 2j48_A Two-component sensor ki 42.3 39 0.0013 28.2 5.8 90 714-810 25-116 (119)
234 2bjv_A PSP operon transcriptio 42.3 47 0.0016 33.4 7.3 23 249-271 30-52 (265)
235 2oxc_A Probable ATP-dependent 42.2 1.1E+02 0.0036 29.9 9.8 93 692-792 69-172 (230)
236 1wik_A Thioredoxin-like protei 41.6 73 0.0025 27.1 7.4 49 714-762 14-68 (109)
237 3kto_A Response regulator rece 40.6 38 0.0013 29.7 5.6 82 714-804 6-97 (136)
238 3eqz_A Response regulator; str 40.0 95 0.0033 26.6 8.3 75 739-814 47-127 (135)
239 3g5j_A Putative ATP/GTP bindin 40.0 29 0.00099 30.7 4.7 53 695-750 72-126 (134)
240 3m62_A Ubiquitin conjugation f 39.4 15 0.00052 44.2 3.3 52 622-674 890-942 (968)
241 3i42_A Response regulator rece 38.8 42 0.0014 28.8 5.5 95 714-814 27-124 (127)
242 2gtj_A FYN-binding protein; SH 38.6 32 0.0011 29.0 4.2 37 45-84 45-81 (96)
243 1qkk_A DCTD, C4-dicarboxylate 37.6 47 0.0016 29.8 5.9 61 714-783 3-64 (155)
244 2qxy_A Response regulator; reg 37.2 48 0.0016 29.1 5.8 27 715-741 5-31 (142)
245 3h5i_A Response regulator/sens 36.7 1.7E+02 0.006 25.3 9.6 63 714-784 5-69 (140)
246 1mvo_A PHOP response regulator 36.5 1.1E+02 0.0039 26.2 8.2 16 796-811 105-120 (136)
247 4b4t_J 26S protease regulatory 36.2 14 0.00047 40.3 2.1 24 248-271 182-205 (405)
248 1tmy_A CHEY protein, TMY; chem 34.8 73 0.0025 26.8 6.4 14 796-809 105-118 (120)
249 3gk5_A Uncharacterized rhodane 34.4 49 0.0017 28.2 5.1 38 712-749 53-90 (108)
250 3grc_A Sensor protein, kinase; 34.4 77 0.0026 27.6 6.7 26 715-740 7-32 (140)
251 1dbw_A Transcriptional regulat 34.2 1.1E+02 0.0037 26.0 7.6 28 715-742 4-31 (126)
252 3qmx_A Glutaredoxin A, glutare 33.7 1.5E+02 0.0052 24.7 8.0 47 714-760 15-62 (99)
253 2rdm_A Response regulator rece 33.6 1.6E+02 0.0054 25.0 8.7 27 715-741 6-32 (132)
254 2q5c_A NTRC family transcripti 33.2 1.3E+02 0.0045 28.9 8.5 93 714-815 4-96 (196)
255 4ddu_A Reverse gyrase; topoiso 32.9 1.1E+02 0.0036 38.2 9.6 83 691-778 100-185 (1104)
256 3eod_A Protein HNR; response r 32.8 88 0.003 26.8 6.7 84 714-806 7-98 (130)
257 3hdv_A Response regulator; PSI 32.8 93 0.0032 26.8 7.0 30 714-743 7-36 (136)
258 1xti_A Probable ATP-dependent 32.1 1.8E+02 0.0062 30.5 10.4 79 692-776 53-137 (391)
259 4b4t_L 26S protease subunit RP 31.7 13 0.00045 41.0 1.0 26 247-272 214-239 (437)
260 3kht_A Response regulator; PSI 31.7 1.1E+02 0.0036 26.9 7.2 85 714-805 5-99 (144)
261 3f6p_A Transcriptional regulat 31.5 1.8E+02 0.0061 24.4 8.5 25 716-740 4-28 (120)
262 4dad_A Putative pilus assembly 31.3 1.4E+02 0.0049 26.0 8.1 95 715-813 46-142 (146)
263 2eyq_A TRCF, transcription-rep 31.0 1.4E+02 0.0047 37.3 10.2 91 692-787 632-726 (1151)
264 4b4t_M 26S protease regulatory 31.0 15 0.0005 40.6 1.2 24 248-271 215-238 (434)
265 3cnb_A DNA-binding response re 30.9 1.2E+02 0.0041 26.2 7.4 16 796-811 114-129 (143)
266 2pv0_B DNA (cytosine-5)-methyl 30.9 36 0.0012 36.5 4.2 48 620-667 90-148 (386)
267 3foj_A Uncharacterized protein 30.5 37 0.0013 28.5 3.6 37 713-749 55-91 (100)
268 1wp9_A ATP-dependent RNA helic 29.7 1.5E+02 0.0051 32.0 9.5 78 692-778 31-112 (494)
269 2ct6_A SH3 domain-binding glut 29.6 1E+02 0.0035 26.4 6.4 47 714-760 7-60 (111)
270 3ql9_A Transcriptional regulat 29.5 44 0.0015 29.9 3.9 47 620-666 54-110 (129)
271 2gkg_A Response regulator homo 29.5 1E+02 0.0035 25.9 6.6 26 716-741 7-32 (127)
272 2qr3_A Two-component system re 29.4 71 0.0024 27.8 5.5 16 796-811 110-125 (140)
273 4b4t_I 26S protease regulatory 29.2 18 0.0006 39.8 1.4 24 248-271 216-239 (437)
274 3hjh_A Transcription-repair-co 28.8 55 0.0019 36.6 5.5 65 714-794 382-446 (483)
275 1wv9_A Rhodanese homolog TT165 28.7 50 0.0017 27.3 4.0 35 715-749 54-88 (94)
276 1tvm_A PTS system, galactitol- 28.7 49 0.0017 28.8 4.0 59 348-406 20-80 (113)
277 3iwh_A Rhodanese-like domain p 28.2 38 0.0013 28.9 3.2 38 712-749 54-91 (103)
278 3eme_A Rhodanese-like domain p 27.8 38 0.0013 28.5 3.2 37 713-749 55-91 (103)
279 3snk_A Response regulator CHEY 27.8 42 0.0014 29.3 3.6 83 714-805 14-105 (135)
280 2rjn_A Response regulator rece 27.2 74 0.0025 28.4 5.3 83 714-805 7-97 (154)
281 3f6c_A Positive transcription 26.8 1.1E+02 0.0037 26.3 6.2 93 714-813 25-121 (134)
282 3nhm_A Response regulator; pro 26.2 2.6E+02 0.0091 23.5 8.8 96 714-813 27-123 (133)
283 1qde_A EIF4A, translation init 26.1 1.4E+02 0.0046 28.8 7.4 93 692-792 59-161 (224)
284 2qv0_A Protein MRKE; structura 26.1 2.6E+02 0.0088 24.1 8.8 23 715-737 10-32 (143)
285 4b4t_K 26S protease regulatory 26.1 19 0.00065 39.6 1.0 24 248-271 206-229 (428)
286 4b4t_H 26S protease regulatory 25.8 19 0.00066 39.9 1.0 25 247-271 242-266 (467)
287 2b4a_A BH3024; flavodoxin-like 25.8 3.1E+02 0.011 23.3 10.8 90 714-811 39-130 (138)
288 2pl1_A Transcriptional regulat 25.4 1.3E+02 0.0044 25.1 6.3 12 737-748 43-54 (121)
289 3eul_A Possible nitrate/nitrit 25.3 1.1E+02 0.0038 27.0 6.2 25 714-738 15-39 (152)
290 3hv2_A Response regulator/HD d 25.1 76 0.0026 28.3 5.0 29 714-742 14-42 (153)
291 1yio_A Response regulatory pro 25.0 2.5E+02 0.0084 26.3 9.0 17 795-811 105-121 (208)
292 3a1b_A DNA (cytosine-5)-methyl 24.9 52 0.0018 30.5 3.6 47 620-666 76-133 (159)
293 1srr_A SPO0F, sporulation resp 24.9 74 0.0025 27.0 4.7 16 796-811 105-120 (124)
294 1r6b_X CLPA protein; AAA+, N-t 24.8 95 0.0032 36.8 7.0 24 249-272 208-231 (758)
295 1jbe_A Chemotaxis protein CHEY 24.7 2.1E+02 0.007 24.1 7.7 26 714-739 4-29 (128)
296 3flh_A Uncharacterized protein 24.7 69 0.0024 28.0 4.4 38 712-749 69-108 (124)
297 1ys7_A Transcriptional regulat 24.4 2.5E+02 0.0084 26.9 9.0 94 714-812 31-125 (233)
298 1gmx_A GLPE protein; transfera 24.2 84 0.0029 26.5 4.8 39 712-750 56-95 (108)
299 1tif_A IF3-N, translation init 24.1 65 0.0022 26.1 3.5 32 66-97 15-46 (78)
300 2v1x_A ATP-dependent DNA helic 23.3 2E+02 0.0067 32.9 9.0 62 714-776 84-145 (591)
301 3h8q_A Thioredoxin reductase 3 23.2 3.4E+02 0.012 22.9 8.9 58 714-772 16-76 (114)
302 3i2d_A E3 SUMO-protein ligase 22.9 1E+02 0.0035 32.8 5.9 51 624-674 250-304 (371)
303 3hix_A ALR3790 protein; rhodan 22.6 64 0.0022 27.3 3.6 38 712-749 50-88 (106)
304 1zgz_A Torcad operon transcrip 22.3 1.8E+02 0.0062 24.2 6.7 25 716-740 4-28 (122)
305 2ysi_A Transcription elongatio 22.1 54 0.0018 22.7 2.4 28 220-247 7-39 (40)
306 4e7p_A Response regulator; DNA 21.8 1.2E+02 0.004 26.8 5.6 23 716-738 22-44 (150)
307 2khp_A Glutaredoxin; thioredox 21.7 3E+02 0.01 21.8 7.7 48 715-762 6-54 (92)
308 2zay_A Response regulator rece 21.7 2.3E+02 0.0078 24.6 7.5 45 714-762 32-76 (147)
309 3dm5_A SRP54, signal recogniti 21.6 77 0.0026 34.9 4.8 22 252-273 104-125 (443)
310 3gt7_A Sensor protein; structu 21.3 1.6E+02 0.0055 26.1 6.4 82 714-804 7-98 (154)
311 3nhv_A BH2092 protein; alpha-b 21.3 73 0.0025 28.8 3.9 37 713-749 71-109 (144)
312 3lua_A Response regulator rece 21.3 3E+02 0.01 23.5 8.2 25 716-740 6-31 (140)
313 2jba_A Phosphate regulon trans 21.3 1.9E+02 0.0064 24.3 6.7 25 716-740 4-28 (127)
314 1e0l_A Formin binding protein; 21.2 68 0.0023 21.7 2.7 28 221-248 4-36 (37)
315 1uaa_A REP helicase, protein ( 21.2 49 0.0017 38.7 3.4 40 420-462 206-246 (673)
316 3n53_A Response regulator rece 21.1 3.8E+02 0.013 22.8 10.5 93 715-811 27-121 (140)
317 3hdg_A Uncharacterized protein 20.8 1.4E+02 0.0049 25.6 5.8 24 738-761 51-74 (137)
318 4dpp_A DHDPS 2, dihydrodipicol 20.4 1.7E+02 0.0058 31.1 7.0 94 729-823 84-191 (360)
319 1oyw_A RECQ helicase, ATP-depe 20.2 2.3E+02 0.008 31.6 8.7 77 692-777 48-125 (523)
320 2kpo_A Rossmann 2X2 fold prote 20.2 3.3E+02 0.011 21.6 8.5 63 699-762 36-98 (110)
321 3rhb_A ATGRXC5, glutaredoxin-C 20.1 3.5E+02 0.012 22.6 8.0 46 715-760 19-68 (113)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-79 Score=730.96 Aligned_cols=499 Identities=29% Similarity=0.410 Sum_probs=402.2
Q ss_pred cccccccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhcc
Q 002901 194 KEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDK 273 (869)
Q Consensus 194 ~~~~~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~ 273 (869)
++.+...|||||++|+.||.....+. +....+||||||+||||||+++|++|....
T Consensus 49 ~p~l~~~LrpyQ~~gv~~l~~~~~~~------------------------~~~~~~g~ILad~mGlGKT~~~i~~i~~l~ 104 (644)
T 1z3i_X 49 DPVLSKVLRPHQREGVKFLWDCVTGR------------------------RIENSYGCIMADEMGLGKTLQCITLIWTLL 104 (644)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHTTS------------------------SSTTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred ChhhhhcccHHHHHHHHHHHHhhhcc------------------------cccCCCCeEeeeCCCchHHHHHHHHHHHHH
Confidence 45688899999999999998754310 011236899999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEE
Q 002901 274 CAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITL 353 (869)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL 353 (869)
...+ . .....+++|
T Consensus 105 ~~~~------------------------------~------------------------------------~~p~~~~~L 118 (644)
T 1z3i_X 105 KQSP------------------------------D------------------------------------CKPEIDKVI 118 (644)
T ss_dssp HCCT------------------------------T------------------------------------SSCSCSCEE
T ss_pred HhCc------------------------------c------------------------------------ccCCCCcEE
Confidence 3220 0 001346799
Q ss_pred EecChhHHHHHHHHHHHhcCCCCeEEEEEeC-CCCCChhhh----------ccccEEEEechhhHhhhcccCCCcceeee
Q 002901 354 IVCPPSVFSTWITQLEEHTVPGMLKTYMYYG-DRTQDVEEL----------KMYDLVLTTYSTLAIEESWLESPVKKIEW 422 (869)
Q Consensus 354 IV~P~sll~qW~~Ei~~~~~~~~l~v~~y~G-~r~~~~~~l----------~~~dVVItTY~~l~~~~~~~~~~l~~~~w 422 (869)
||||.+++.||.+||.+|+.. .+.++.++| .+......+ ..++|+||||+++..+. ..+....|
T Consensus 119 iV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~----~~l~~~~~ 193 (644)
T 1z3i_X 119 VVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA----EVLHKGKV 193 (644)
T ss_dssp EEECHHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----TTTTTSCC
T ss_pred EEecHHHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----HHhhcCCc
Confidence 999999999999999999843 466666665 322111111 24799999999999876 34667899
Q ss_pred eEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccCChhhhHhhhhhhccCCCCchHHHHHHhccccccCC-----
Q 002901 423 WRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGN----- 497 (869)
Q Consensus 423 ~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~~~~~f~~~~~~p~~~~~----- 497 (869)
++||+||||++||+.++.++++..+.+.+||+|||||++|++.|||++++||+|++|++...|.+.|..|+..+.
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred cEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876321
Q ss_pred -------hhhHHHHHHHHhhhhhhccCCCCCcCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHH
Q 002901 498 -------RKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYST 570 (869)
Q Consensus 498 -------~~~~~~L~~ll~~~~lRRtk~~~~~~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 570 (869)
...+..|+.++.++++||+|+.+...||++.+.+++++|++.|+++|+.+....+.. ...........
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~-----~~~~~g~~~~~ 348 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-----ESLQTGKISVS 348 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG-----GSSCTTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH-----HHHhcCccchh
Confidence 234667889999999999999888899999999999999999999999887654321 11111234577
Q ss_pred HHHHHHHHHHhhcccCCCcccccccCCCCCccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCCccchhHH
Q 002901 571 VLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCI 650 (869)
Q Consensus 571 il~~llrLRq~c~h~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci 650 (869)
++..+++||++|+||.++...... ..+... .+.+.
T Consensus 349 ~l~~l~~Lrk~c~hp~l~~~~~~~-------------------------~~~~~~--~~~~~------------------ 383 (644)
T 1z3i_X 349 SLSSITSLKKLCNHPALIYEKCLT-------------------------GEEGFD--GALDL------------------ 383 (644)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHH-------------------------TCTTCT--TGGGT------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhc-------------------------ccchhh--hHHhh------------------
Confidence 899999999999999886422100 000000 00000
Q ss_pred HHhhhccCCCCCCCCCCccCCCcccCCCCCCCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHH
Q 002901 651 LKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILL 730 (869)
Q Consensus 651 ~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l 730 (869)
+ +... .........|+|+..|..++..... .++.|+||||+|+.++++|
T Consensus 384 ----------~---------------~~~~-----~~~~~~~~~s~K~~~l~~ll~~~~~-~~~~k~lIFs~~~~~~~~l 432 (644)
T 1z3i_X 384 ----------F---------------PQNY-----STKAVEPQLSGKMLVLDYILAMTRT-TTSDKVVLVSNYTQTLDLF 432 (644)
T ss_dssp ----------S---------------CSSC-----CSSSCCGGGSHHHHHHHHHHHHHHH-HCCCEEEEEESCHHHHHHH
T ss_pred ----------c---------------cccc-----cccccCcccChHHHHHHHHHHHHhh-cCCCEEEEEEccHHHHHHH
Confidence 0 0000 0001123458999998888887653 3478999999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhh
Q 002901 731 EEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVH 810 (869)
Q Consensus 731 ~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvh 810 (869)
+..|...|+.+.+++|+|+.++|++++++|++++. ...|+|+|+++||+||||++|++||++||||||+.+.||+||+|
T Consensus 433 ~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~-~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~ 511 (644)
T 1z3i_X 433 EKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSS-PEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVW 511 (644)
T ss_dssp HHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTC-CCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSS
T ss_pred HHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCC-CcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhh
Confidence 99999999999999999999999999999999533 33689999999999999999999999999999999999999999
Q ss_pred hcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhccccccccCCHHHHHHhhCC
Q 002901 811 RIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869 (869)
Q Consensus 811 RiGQ~k~V~V~rli~~~siEe~i~~~q~~K~~l~~~~~~~~~~~~~~~~~~dl~~lf~~ 869 (869)
|+||+++|+||+|++++|+||+|+++|..|+.|++.+++++....+.++.+||+.||++
T Consensus 512 R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 512 RDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSL 570 (644)
T ss_dssp STTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCC
T ss_pred hcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999887666678999999999975
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-77 Score=729.73 Aligned_cols=483 Identities=27% Similarity=0.396 Sum_probs=380.3
Q ss_pred CCcccccccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHh
Q 002901 192 PPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 192 ~~~~~~~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~ 271 (869)
+||.....+|||||++|+.||+.... ..+||||||+||||||+++|+++..
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~-----------------------------~~~~~ILademGlGKT~~ai~~i~~ 278 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWS-----------------------------KGDNGILADEMGLGKTVQTVAFISW 278 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHT-----------------------------TTCCEEECCCTTSSTTHHHHHHHHH
T ss_pred CCCccCCCCcCHHHHHHHHHHHHHhh-----------------------------cCCCEEEEeCCCcchHHHHHHHHHH
Confidence 34445568999999999999986433 1269999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccce
Q 002901 272 DKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKI 351 (869)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (869)
..... ...++
T Consensus 279 l~~~~----------------------------------------------------------------------~~~~~ 288 (800)
T 3mwy_W 279 LIFAR----------------------------------------------------------------------RQNGP 288 (800)
T ss_dssp HHHHH----------------------------------------------------------------------SCCSC
T ss_pred HHHhc----------------------------------------------------------------------CCCCC
Confidence 64111 03578
Q ss_pred EEEecChhHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC---------------hhhhccccEEEEechhhHhhhcccCCC
Q 002901 352 TLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQD---------------VEELKMYDLVLTTYSTLAIEESWLESP 416 (869)
Q Consensus 352 tLIV~P~sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~~---------------~~~l~~~dVVItTY~~l~~~~~~~~~~ 416 (869)
+|||||.+++.||.+||.+|+ +.+++.+|+|..... .....++|||||||+++.++.. .
T Consensus 289 ~LIV~P~sll~qW~~E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~----~ 362 (800)
T 3mwy_W 289 HIIVVPLSTMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA----E 362 (800)
T ss_dssp EEEECCTTTHHHHHHHHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH----H
T ss_pred EEEEECchHHHHHHHHHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH----H
Confidence 999999999999999999999 789999999933211 1234578999999999998763 4
Q ss_pred cceeeeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccCChhhhHhhhhhhccCCCCchHHHHHHhccccccC
Q 002901 417 VKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQG 496 (869)
Q Consensus 417 l~~~~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~~~~~f~~~~~~p~~~~ 496 (869)
+..+.|++||+||||++||++++.++++..+.+.+||+|||||++|++.|||+|++||.|+.|.....|...... ..
T Consensus 363 l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---~~ 439 (800)
T 3mwy_W 363 LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---EE 439 (800)
T ss_dssp HHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---TH
T ss_pred HhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---hh
Confidence 677899999999999999999999999999999999999999999999999999999999999876665422111 11
Q ss_pred ChhhHHHHHHHHhhhhhhccCCCCCcCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Q 002901 497 NRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILL 576 (869)
Q Consensus 497 ~~~~~~~L~~ll~~~~lRRtk~~~~~~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~il~~ll 576 (869)
....+..|+.++.++++||+|.++...||++.+.+++++|++.|+++|+.+.......+... .......++..++
T Consensus 440 ~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~-----~~~~~~~~l~~l~ 514 (800)
T 3mwy_W 440 QEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG-----AKGGHFSLLNIMN 514 (800)
T ss_dssp HHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----cccchhhHHHHHH
Confidence 23457889999999999999999889999999999999999999999998876533222211 1123346889999
Q ss_pred HHHHhhcccCCCcccccccCCCCCccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCCccchhHHHHhhhc
Q 002901 577 RLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQH 656 (869)
Q Consensus 577 rLRq~c~h~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~ 656 (869)
+||++|+||.++............. ..........
T Consensus 515 ~Lrk~~~hp~l~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------------------------- 549 (800)
T 3mwy_W 515 ELKKASNHPYLFDNAEERVLQKFGD-GKMTRENVLR-------------------------------------------- 549 (800)
T ss_dssp HHHHHHHCGGGSSSHHHHHCCCC-----CCSHHHHH--------------------------------------------
T ss_pred HHHHHhcChhhhcchHHHHHHhccc-ccccHHHHHH--------------------------------------------
Confidence 9999999999875432211110000 0000000000
Q ss_pred cCCCCCCCCCCccCCCcccCCCCCCCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHH
Q 002901 657 TKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQA 736 (869)
Q Consensus 657 ~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~ 736 (869)
.....|+|+..|.++|..+.. .++|+||||||+.++++|+..|..
T Consensus 550 ---------------------------------~l~~~s~K~~~L~~lL~~~~~--~g~kvLIFsq~~~~ld~L~~~L~~ 594 (800)
T 3mwy_W 550 ---------------------------------GLIMSSGKMVLLDQLLTRLKK--DGHRVLIFSQMVRMLDILGDYLSI 594 (800)
T ss_dssp ---------------------------------HHHHTCHHHHHHHHHHHHHTT--TTCCEEEEESCHHHHHHHHHHHHH
T ss_pred ---------------------------------HhhhcChHHHHHHHHHHHHhh--CCCeEEEEechHHHHHHHHHHHHh
Confidence 012248999999999998863 489999999999999999999999
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcc
Q 002901 737 AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKE 816 (869)
Q Consensus 737 ~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k 816 (869)
.|+++.+++|+|+.++|++++++|++++. ...|||+|+++||+||||++|++||+|||+|||+.+.||+||+||+||++
T Consensus 595 ~g~~~~~i~G~~~~~eR~~~i~~F~~~~~-~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 595 KGINFQRLDGTVPSAQRRISIDHFNSPDS-NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp HTCCCEEESTTSCHHHHHHHHHTTSSTTC-SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhhCCCC-CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999654 33689999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhccc------cccccCCHHHHHHhhC
Q 002901 817 DVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKG------KDQREVSTDDLRILMS 868 (869)
Q Consensus 817 ~V~V~rli~~~siEe~i~~~q~~K~~l~~~~~~~~~------~~~~~~~~~dl~~lf~ 868 (869)
+|+||+|++++|+||+|++++.+|..|...+++.+. ......+.+||..|+.
T Consensus 674 ~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 674 HVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp CEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHH
Confidence 999999999999999999999999999999987653 1234678899988863
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.8e-75 Score=682.62 Aligned_cols=462 Identities=31% Similarity=0.480 Sum_probs=402.3
Q ss_pred cccccccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhcc
Q 002901 194 KEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDK 273 (869)
Q Consensus 194 ~~~~~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~ 273 (869)
|..++..|+|||++|+.||...... .+||||||+||+|||+++++++....
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~-----------------------------~~~~ilad~~GlGKT~~ai~~i~~~~ 81 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKL-----------------------------GFGICLADDMGLGKTLQTIAVFSDAK 81 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHT-----------------------------TCCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred ChhhhccchHHHHHHHHHHHHHhhC-----------------------------CCCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 5678999999999999999865431 26899999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEE
Q 002901 274 CAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITL 353 (869)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL 353 (869)
... ..+++|
T Consensus 82 ~~~-----------------------------------------------------------------------~~~~~L 90 (500)
T 1z63_A 82 KEN-----------------------------------------------------------------------ELTPSL 90 (500)
T ss_dssp HTT-----------------------------------------------------------------------CCSSEE
T ss_pred hcC-----------------------------------------------------------------------CCCCEE
Confidence 221 346799
Q ss_pred EecChhHHHHHHHHHHHhcCCCCeEEEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCcccc
Q 002901 354 IVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVI 433 (869)
Q Consensus 354 IV~P~sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~i 433 (869)
||||.+++.||.+||++|+ +.+++.+|+|.+.. ..+..+|||||||+++.++.. +....|++||+||||++
T Consensus 91 Iv~P~~l~~qw~~e~~~~~--~~~~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 91 VICPLSVLKNWEEELSKFA--PHLRFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp EEECSTTHHHHHHHHHHHC--TTSCEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGG
T ss_pred EEccHHHHHHHHHHHHHHC--CCceEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCcccc
Confidence 9999999999999999998 67889999995432 345789999999999987753 56779999999999999
Q ss_pred CCcChHHHHHHhhcccCeEEEEecccccCChhhhHhhhhhhccCCCCchHHHHHHhccccccCChhhHHHHHHHHhhhhh
Q 002901 434 KNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISL 513 (869)
Q Consensus 434 kn~~s~~~ka~~~L~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~ll~~~~l 513 (869)
+|..++.++++..+.+.+||+|||||++|++.|||++++||+|++|++...|.+.|..|+..++......|+.++.++++
T Consensus 162 kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~l 241 (500)
T 1z63_A 162 KNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFIL 241 (500)
T ss_dssp SCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEE
T ss_pred CCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHee
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred hccCCC--CCcCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhhcccCCCccc
Q 002901 514 RRTKDK--GLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSD 591 (869)
Q Consensus 514 RRtk~~--~~~~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~il~~llrLRq~c~h~~l~~~~ 591 (869)
||+|.+ +...||++.+..+++++++.|++.|+.+.......+ ...........++..+++|||+|+||.++...
T Consensus 242 rr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 242 RRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp CCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred eecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHH----HhhhcccchHHHHHHHHHHHHHhCCHHHhcCc
Confidence 999985 556899999999999999999999998765532211 12223345677899999999999999765311
Q ss_pred ccccCCCCCccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCC
Q 002901 592 VRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQS 671 (869)
Q Consensus 592 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 671 (869)
.
T Consensus 318 ~------------------------------------------------------------------------------- 318 (500)
T 1z63_A 318 E------------------------------------------------------------------------------- 318 (500)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcccCCCCCCCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc-CCcEEEEeCCCCH
Q 002901 672 DLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA-GFKLLRLDGSMNA 750 (869)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~-gi~~~rldG~~~~ 750 (869)
.....|+|+.+|.++|.+... ++.|+|||++|+.+++.|...|... |+.+.+++|+++.
T Consensus 319 ------------------~~~~~s~K~~~l~~~l~~~~~--~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 378 (500)
T 1z63_A 319 ------------------QSVRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSK 378 (500)
T ss_dssp ------------------CCSTTCHHHHHHHHHHHHHHT--TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCH
T ss_pred ------------------chhhcchhHHHHHHHHHHHHc--cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCH
Confidence 012348999999999998763 4899999999999999999999986 9999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002901 751 KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIE 830 (869)
Q Consensus 751 ~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siE 830 (869)
++|++++++|+++ + .+.|+|+|++++|+||||++|++||++||+|||+.+.||+||+||+||+++|+||+|++++|+|
T Consensus 379 ~~R~~~~~~F~~~-~-~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 379 KERDDIISKFQNN-P-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp HHHHHHHHHHHHC-T-TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred HHHHHHHHHhcCC-C-CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 9999999999984 2 3468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccCCHHHHHHhhCC
Q 002901 831 ERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869 (869)
Q Consensus 831 e~i~~~q~~K~~l~~~~~~~~~~~~~~~~~~dl~~lf~~ 869 (869)
|+|++++++|+.+++.+++++......++.+||+.||++
T Consensus 457 e~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 457 EKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIEL 495 (500)
T ss_dssp HHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHHhcc
Confidence 999999999999999999987777788999999999975
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6e-52 Score=514.54 Aligned_cols=425 Identities=18% Similarity=0.228 Sum_probs=322.3
Q ss_pred cccccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCC
Q 002901 196 VIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCA 275 (869)
Q Consensus 196 ~~~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~ 275 (869)
....+|+|||++|+.|++.+.. .|+||||+||+|||+++++++......
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~~-------------------------------~~~LLad~tGlGKTi~Ai~~i~~l~~~ 197 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRHA-------------------------------PRVLLADEVGLGKTIEAGMILHQQLLS 197 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSSS-------------------------------CEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHhcC-------------------------------CCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3568899999999999997533 589999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEe
Q 002901 276 GVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIV 355 (869)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV 355 (869)
+ ..+++|||
T Consensus 198 g-----------------------------------------------------------------------~~~rvLIV 206 (968)
T 3dmq_A 198 G-----------------------------------------------------------------------AAERVLII 206 (968)
T ss_dssp S-----------------------------------------------------------------------SCCCEEEE
T ss_pred C-----------------------------------------------------------------------CCCeEEEE
Confidence 2 34579999
Q ss_pred cChhHHHHHHHHHHHhcCCCCeEEEEEeCCCC-----CChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCc
Q 002901 356 CPPSVFSTWITQLEEHTVPGMLKTYMYYGDRT-----QDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEA 430 (869)
Q Consensus 356 ~P~sll~qW~~Ei~~~~~~~~l~v~~y~G~r~-----~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEa 430 (869)
||.+++.||..||.+++ .+++.+|+|.+. .....+..+||||+||+++.+.... ...+....|++||+|||
T Consensus 207 vP~sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEA 282 (968)
T 3dmq_A 207 VPETLQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEA 282 (968)
T ss_dssp CCTTTHHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCS
T ss_pred eCHHHHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhh
Confidence 99999999999999988 466778887331 1123456789999999999875421 12345668999999999
Q ss_pred cccCCcChHH---HHHHhhc--ccCeEEEEecccccCChhhhHhhhhhhccCCCCchHHHHHHhccccc---------cC
Q 002901 431 HVIKNANAQQ---SRTVTNL--NAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLA---------QG 496 (869)
Q Consensus 431 H~ikn~~s~~---~ka~~~L--~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~~~~~f~~~~~~p~~---------~~ 496 (869)
|+++|..+.. ++++..+ ++.++|+|||||++|++.|+|++++|+++..|.+...|...+..... .+
T Consensus 283 H~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~ 362 (968)
T 3dmq_A 283 HHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAG 362 (968)
T ss_dssp SCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 9999987654 8888888 68899999999999999999999999999999998888755321110 00
Q ss_pred ----------------------------------ChhhHHHHHHHHh-----hhhhhccCCCCCcCCCCceEEEEEEeCC
Q 002901 497 ----------------------------------NRKGLSRLQVLMS-----TISLRRTKDKGLIGLQPKTIEKYYVELS 537 (869)
Q Consensus 497 ----------------------------------~~~~~~~L~~ll~-----~~~lRRtk~~~~~~LP~k~~~~v~v~ls 537 (869)
.......+..+++ .+++|+++.. +..+|++....+.++++
T Consensus 363 ~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~-i~~~p~r~~~~~~l~~~ 441 (968)
T 3dmq_A 363 NKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNG-VKGFPKRELHTIKLPLP 441 (968)
T ss_dssp CCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTT-CCCCCCCCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhh-hcccChhheEeeecCCC
Confidence 0011223333333 3445555543 46899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhhcccCCCcccccccCCCCCccccCCChHHHHHHHHH
Q 002901 538 LEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEV 617 (869)
Q Consensus 538 ~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~il~~llrLRq~c~h~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 617 (869)
+.++..|+..... ......... ...+.+|......
T Consensus 442 ~~~~~~~~~~~~~---------~~~~~~~~~----------~~~~l~pe~~~~~-------------------------- 476 (968)
T 3dmq_A 442 TQYQTAIKVSGIM---------GARKSAEDR----------ARDMLYPERIYQE-------------------------- 476 (968)
T ss_dssp HHHHHHHHHHHHT---------TCCSSGGGG----------THHHHCSGGGTTT--------------------------
T ss_pred HHHHHHHHHHhhh---------hhhhhhHHH----------HhhhcChHHHHHH--------------------------
Confidence 9998888642110 000000000 0000111000000
Q ss_pred HhcCCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcccCCCCCCCcccccccccccCcch
Q 002901 618 LQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSK 697 (869)
Q Consensus 618 l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 697 (869)
+. .........+.|
T Consensus 477 --------------------------------------------------l~----------------~~~~~~~~~~~K 490 (968)
T 3dmq_A 477 --------------------------------------------------FE----------------GDNATWWNFDPR 490 (968)
T ss_dssp --------------------------------------------------TT----------------SSSCCTTTTSHH
T ss_pred --------------------------------------------------hh----------------hhhhcccCccHH
Confidence 00 000011335899
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecC
Q 002901 698 VSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQA-AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLK 776 (869)
Q Consensus 698 ~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~-~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~ 776 (869)
+.+|.+++.. .++.|+|||+++..+++.|...|.. .|+++..++|+|+.++|.+++++|++++ +.+.||+ +++
T Consensus 491 ~~~L~~ll~~----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~-~~~~vLv-aT~ 564 (968)
T 3dmq_A 491 VEWLMGYLTS----HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEED-TGAQVLL-CSE 564 (968)
T ss_dssp HHHHHHHHHH----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTT-SSCEEEE-CSC
T ss_pred HHHHHHHHHh----CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCC-CcccEEE-ecc
Confidence 9999999987 4588999999999999999999995 6999999999999999999999999953 2346655 669
Q ss_pred CccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 002901 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLA 844 (869)
Q Consensus 777 agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K~~l~ 844 (869)
++++|+|++.|++||++|++|||..+.|++||++|+||+++|+||+++.++|+|++|++.+.+|.++.
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999998887653
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.9e-46 Score=429.00 Aligned_cols=443 Identities=15% Similarity=0.153 Sum_probs=282.6
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCCCC
Q 002901 199 SELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVA 278 (869)
Q Consensus 199 ~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~~~ 278 (869)
.+|+|||++++.|++. +++||+++||+|||+++++++..... .
T Consensus 8 ~~l~~~Q~~~i~~~~~----------------------------------~~~ll~~~tG~GKT~~~~~~~~~~~~-~-- 50 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----------------------------------TNCLIVLPTGLGKTLIAMMIAEYRLT-K-- 50 (494)
T ss_dssp HCCCHHHHHHHHHGGG----------------------------------SCEEEECCTTSCHHHHHHHHHHHHHH-H--
T ss_pred CCccHHHHHHHHHHhh----------------------------------CCEEEEcCCCCCHHHHHHHHHHHHHh-c--
Confidence 4799999999999986 26999999999999999999876531 0
Q ss_pred CCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEecCh
Q 002901 279 PGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPP 358 (869)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~ 358 (869)
..+++|||||.
T Consensus 51 ---------------------------------------------------------------------~~~~~liv~P~ 61 (494)
T 1wp9_A 51 ---------------------------------------------------------------------YGGKVLMLAPT 61 (494)
T ss_dssp ---------------------------------------------------------------------SCSCEEEECSS
T ss_pred ---------------------------------------------------------------------CCCeEEEEECC
Confidence 24569999997
Q ss_pred -hHHHHHHHHHHHhcCCCCeEEEEEeCCCCC--ChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCC
Q 002901 359 -SVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKN 435 (869)
Q Consensus 359 -sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~--~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn 435 (869)
+|+.||.+++.+++..+..++..++|.... ....+..++|+|+||+++...... ..+....|++||+||||++++
T Consensus 62 ~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp HHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCC
Confidence 889999999999986566789999994322 223346799999999999987643 334556799999999999997
Q ss_pred cChHHHHH--Hh-hcccCeEEEEecccccCChhhhHhhhhhhccCCCCchHHHHHHhccccccCChhhHHHHHHHHhhhh
Q 002901 436 ANAQQSRT--VT-NLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTIS 512 (869)
Q Consensus 436 ~~s~~~ka--~~-~L~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~ll~~~~ 512 (869)
..+..... +. .....++|+|||||. |+..+++.++.++.+........+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~----------------------- 195 (494)
T 1wp9_A 140 NYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDV----------------------- 195 (494)
T ss_dssp TCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTT-----------------------
T ss_pred CCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHH-----------------------
Confidence 54333221 11 135789999999999 7788888888888765332111100000
Q ss_pred hhccCCCCCcCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCc----------------------------
Q 002901 513 LRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSL---------------------------- 564 (869)
Q Consensus 513 lRRtk~~~~~~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~---------------------------- 564 (869)
...+++.....+.+.+++....+++.+.......+......+-.
T Consensus 196 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (494)
T 1wp9_A 196 --------RPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNH 267 (494)
T ss_dssp --------GGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCC
T ss_pred --------HHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhcccc
Confidence 01122333344445555555555544433333222222221110
Q ss_pred -ccchHHHHHHHHHHHHhhcccCCCcccccccCCCCCccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCC
Q 002901 565 -MRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAH 643 (869)
Q Consensus 565 -~~~~~~il~~llrLRq~c~h~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h 643 (869)
.-.....+..++.+.....+.. .........+...+.... ....... ...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~-------~~~~~~~----~~~ 318 (494)
T 1wp9_A 268 DLRGLLLYHAMALKLHHAIELLE------------------TQGLSALRAYIKKLYEEA-------KAGSTKA----SKE 318 (494)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHH-------HTTCCHH----HHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH------------------hhcHHHHHHHHHHHHHhh-------ccccchh----hhh
Confidence 0001111111222211111000 000001111111000000 0000000 000
Q ss_pred ccchhHHHHhhhccCCCCCCCCCCccCCCcccCCCCCCCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEecc
Q 002901 644 IFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQF 723 (869)
Q Consensus 644 ~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~ 723 (869)
.++..-+...+... .........++|+..|.++|.+.....++.|+|||+++
T Consensus 319 ~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 370 (494)
T 1wp9_A 319 IFSDKRMKKAISLL----------------------------VQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNY 370 (494)
T ss_dssp HHTSHHHHHHHHHH----------------------------HHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred hhhhHHHHHHHHHH----------------------------HHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEcc
Confidence 00000000000000 00000123588999999999987655668999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeC--------CCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcC
Q 002901 724 RKMLILLEEPLQAAGFKLLRLDG--------SMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEP 795 (869)
Q Consensus 724 ~~~ld~l~~~L~~~gi~~~rldG--------~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp 795 (869)
..+++.+...|...|+++.+++| +|+.++|.+++++|+++ .+.| |++++++|+|+||++|++||++|+
T Consensus 371 ~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 371 RETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG---EFNV-LVATSVGEEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT---SCSE-EEECGGGGGGGGSTTCCEEEESSC
T ss_pred HHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC---CceE-EEECCccccCCCchhCCEEEEeCC
Confidence 99999999999999999999999 99999999999999984 2355 566799999999999999999999
Q ss_pred CCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 002901 796 WWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAR 845 (869)
Q Consensus 796 ~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K~~l~~ 845 (869)
+|||+.+.||+||+||.|| +.+|+|+.++|+||+++..+.+|.++++
T Consensus 447 ~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 447 VPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp CHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998 8999999999999999999999988775
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-44 Score=384.23 Aligned_cols=254 Identities=29% Similarity=0.425 Sum_probs=194.9
Q ss_pred hhhhccCCCCCcCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhhcccCCCcc
Q 002901 511 ISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPS 590 (869)
Q Consensus 511 ~~lRRtk~~~~~~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~il~~llrLRq~c~h~~l~~~ 590 (869)
--+||+|+++..+|||+.+.+++|+||+.|+++|+.+.......+ ...........++..+++|||+|+||.++..
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~ 87 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDHPALLKG 87 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHH----HhccccchHHHHHHHHHHHHHHcCCHHHhcC
Confidence 358999999999999999999999999999999999877654332 2222223456789999999999999987531
Q ss_pred cccccCCCCCccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 591 DVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
..
T Consensus 88 ~~------------------------------------------------------------------------------ 89 (271)
T 1z5z_A 88 GE------------------------------------------------------------------------------ 89 (271)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCcccCCCCCCCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc-CCcEEEEeCCCC
Q 002901 671 SDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA-GFKLLRLDGSMN 749 (869)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~-gi~~~rldG~~~ 749 (869)
.....|+|+.+|.++|.+... ++.|+||||+|+.+++.|+..|... |+++.+++|+++
T Consensus 90 -------------------~~~~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~ 148 (271)
T 1z5z_A 90 -------------------QSVRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 148 (271)
T ss_dssp -------------------CCSTTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred -------------------cccccCHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 002248999999999998764 3789999999999999999999985 999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCH
Q 002901 750 AKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829 (869)
Q Consensus 750 ~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~si 829 (869)
.++|++++++|+++ + .+.|+|+|+++||+||||+.|++||+|||||||+.+.||+||+||+||+++|+||+|++++|+
T Consensus 149 ~~~R~~~i~~F~~~-~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 149 KKERDDIISKFQNN-P-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp HHHHHHHHHHHHHC-T-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred HHHHHHHHHHhcCC-C-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 99999999999984 2 347899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCHHHHHHhhCC
Q 002901 830 EERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL 869 (869)
Q Consensus 830 Ee~i~~~q~~K~~l~~~~~~~~~~~~~~~~~~dl~~lf~~ 869 (869)
||+|++++++|..+++.+++++......++.+||+.||++
T Consensus 227 Ee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 266 (271)
T 1z5z_A 227 EEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIEL 266 (271)
T ss_dssp HHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHccCchhhhcCCHHHHHHHhcc
Confidence 9999999999999999999987666778999999999975
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.1e-40 Score=379.60 Aligned_cols=377 Identities=17% Similarity=0.181 Sum_probs=253.0
Q ss_pred cccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCCC
Q 002901 198 KSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGV 277 (869)
Q Consensus 198 ~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~~ 277 (869)
..+|+|||++|+.+++.. +++||+++||+|||++++.++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~---------------------------------~~~ll~~~TGsGKT~~~l~~i~~~----- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD---------------------------------KRGCIVLPTGSGKTHVAMAAINEL----- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT---------------------------------TEEEEECCTTSCHHHHHHHHHHHH-----
T ss_pred CCCcCHHHHHHHHHHHhc---------------------------------CCEEEEeCCCCCHHHHHHHHHHHc-----
Confidence 467999999999988752 359999999999999999888753
Q ss_pred CCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEecC
Q 002901 278 APGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCP 357 (869)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P 357 (869)
.+++|||||
T Consensus 133 -----------------------------------------------------------------------~~~~Lvl~P 141 (472)
T 2fwr_A 133 -----------------------------------------------------------------------STPTLIVVP 141 (472)
T ss_dssp -----------------------------------------------------------------------CSCEEEEES
T ss_pred -----------------------------------------------------------------------CCCEEEEEC
Confidence 235899999
Q ss_pred h-hHHHHHHHHHHHhcCCCCeE-EEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCC
Q 002901 358 P-SVFSTWITQLEEHTVPGMLK-TYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKN 435 (869)
Q Consensus 358 ~-sll~qW~~Ei~~~~~~~~l~-v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn 435 (869)
. +|+.||.++|.++ .++ +.+++|.... ..+|+|+||+.+....... .-+|++||+||||++.+
T Consensus 142 ~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 142 TLALAEQWKERLGIF----GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp SHHHHHHHHHHGGGG----CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTS
T ss_pred CHHHHHHHHHHHHhC----CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCC
Confidence 9 8899999999994 356 8888884332 4789999999998765321 12589999999999998
Q ss_pred cChHHHHHHhhcccCeEEEEecccccCChhhhHhhhhhhccCCCCchHHHHHHhccccccCChhhHHHHHHHHhhhhhhc
Q 002901 436 ANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRR 515 (869)
Q Consensus 436 ~~s~~~ka~~~L~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~ll~~~~lRR 515 (869)
+... +.+..+.+.++++|||||..+.-.+. .+.. ++.+.+.++
T Consensus 207 ~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~-~l~~----------------------------------~~~~~~~~~ 249 (472)
T 2fwr_A 207 ESYV--QIAQMSIAPFRLGLTATFEREDGRHE-ILKE----------------------------------VVGGKVFEL 249 (472)
T ss_dssp TTTH--HHHHTCCCSEEEEEESCCCCTTSGGG-SHHH----------------------------------HTCCEEEEC
T ss_pred hHHH--HHHHhcCCCeEEEEecCccCCCCHHH-HHHH----------------------------------HhCCeEeec
Confidence 7644 35556688999999999997542220 1111 111222221
Q ss_pred cCCCC-CcCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhhcccCCCcccccc
Q 002901 516 TKDKG-LIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRS 594 (869)
Q Consensus 516 tk~~~-~~~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~il~~llrLRq~c~h~~l~~~~~~~ 594 (869)
...+. ...+++.....+.+++++.++..|+.+...... ++...... ...+ .....
T Consensus 250 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~----------------~~~~----~~~~~ 305 (472)
T 2fwr_A 250 FPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARGIT----------------LRRA----EDFNK 305 (472)
T ss_dssp CHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCCCT----------------TTCC----SSSTT
T ss_pred CHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHH----HHHhcCcc----------------ccch----hhHHH
Confidence 11111 123667777788899999999998866443221 11110000 0000 00000
Q ss_pred cCCCCCccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 595 IIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 595 ~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
+..... .++.++..+..
T Consensus 306 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~---- 322 (472)
T 2fwr_A 306 IVMASG-----------------------------------------------------------YDERAYEALRA---- 322 (472)
T ss_dssp TTTTTC-----------------------------------------------------------CSSSSSTTTHH----
T ss_pred HHHHhc-----------------------------------------------------------cCHHHHHHHHH----
Confidence 000000 00000000000
Q ss_pred cCCCCCCCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Q 002901 675 SSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRA 754 (869)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~ 754 (869)
...........+.|+..|.++|.+ ..+.|+|||+++..+++.+...|. +..++|+++.++|+
T Consensus 323 ---------~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~ 384 (472)
T 2fwr_A 323 ---------WEEARRIAFNSKNKIRKLREILER----HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREERE 384 (472)
T ss_dssp ---------HHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHH
T ss_pred ---------HHHHHHHhhcChHHHHHHHHHHHh----CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHH
Confidence 000000012347899999999887 347899999999999999998874 44689999999999
Q ss_pred HHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCc-ccEEEEEEEeCCCHHHHH
Q 002901 755 QVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQK-EDVKIVRLIVRNSIEERI 833 (869)
Q Consensus 755 ~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~-k~V~V~rli~~~siEe~i 833 (869)
+++++|+++ .+.|| ++++++++|+|++.++.||++|++|||..+.|++||++|.||. +.|.+|.|+.++|+||++
T Consensus 385 ~~~~~F~~g---~~~vL-v~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~ 460 (472)
T 2fwr_A 385 EILEGFRTG---RFRAI-VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNT 460 (472)
T ss_dssp THHHHHHHS---SCSBC-BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC----
T ss_pred HHHHHHhCC---CCCEE-EEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHH
Confidence 999999984 33555 6779999999999999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHH
Q 002901 834 LELQDRKKKLA 844 (869)
Q Consensus 834 ~~~q~~K~~l~ 844 (869)
.+.+++|++++
T Consensus 461 ~~~r~~~~~~a 471 (472)
T 2fwr_A 461 ARRRKNAAKGA 471 (472)
T ss_dssp -----------
T ss_pred HHHHHHhhccC
Confidence 99999888765
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.6e-36 Score=371.89 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=96.9
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHhC
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA------------GFKLLRLDGSMNAKKRAQVIEEFG 761 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~------------gi~~~rldG~~~~~~R~~~i~~F~ 761 (869)
.++|+..|.++|.+.....++.|+|||++++.+++.|...|... |..+..++|+|+.++|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 48999999999998765567899999999999999999999987 666677788899999999999999
Q ss_pred CCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 002901 762 NPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841 (869)
Q Consensus 762 ~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K~ 841 (869)
++ +.+.| |++++++|+|||++.++.||+||++|||..+.||+|| ||.+++.+|.|+..+|+|++.. ++..|.
T Consensus 691 ~~--g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke 762 (936)
T 4a2w_A 691 TS--KDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKE 762 (936)
T ss_dssp -----CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHH
T ss_pred cc--CCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHH
Confidence 82 22354 5677999999999999999999999999999999999 6668899999999999999866 777788
Q ss_pred HHHHHHHhcc
Q 002901 842 KLAREAFRRK 851 (869)
Q Consensus 842 ~l~~~~~~~~ 851 (869)
+++..++..-
T Consensus 763 ~~~~~~i~~l 772 (936)
T 4a2w_A 763 EMMNKAVEKI 772 (936)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877653
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.5e-36 Score=356.49 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=91.4
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHhC
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA------------GFKLLRLDGSMNAKKRAQVIEEFG 761 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~------------gi~~~rldG~~~~~~R~~~i~~F~ 761 (869)
.++|+..|+++|.+.....++.|+|||++++.+++.|...|... |..+..++|+|+.++|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 48999999999988765567899999999999999999999876 566667778899999999999999
Q ss_pred CCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 002901 762 NPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841 (869)
Q Consensus 762 ~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K~ 841 (869)
++ +.+.| |++++++|+|||++++++||+||++|||....|++|| |+.+++.+|.|+.++++|++ ..++..|.
T Consensus 450 ~~--g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~ 521 (556)
T 4a2p_A 450 TS--KDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKE 521 (556)
T ss_dssp ------CCE-EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHH
T ss_pred cc--CceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHH
Confidence 82 22355 4566999999999999999999999999999999999 56688999999999999999 77888898
Q ss_pred HHHHHHHhcc
Q 002901 842 KLAREAFRRK 851 (869)
Q Consensus 842 ~l~~~~~~~~ 851 (869)
+++..++..-
T Consensus 522 ~~~~~~i~~i 531 (556)
T 4a2p_A 522 EMMNKAVEKI 531 (556)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8988888753
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.5e-36 Score=353.93 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=110.0
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcC------------CcEEEEeCCCCHHHHHHHHHHhC
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAG------------FKLLRLDGSMNAKKRAQVIEEFG 761 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~g------------i~~~rldG~~~~~~R~~~i~~F~ 761 (869)
.++|+..|.++|.+.....++.|+|||++++.+++.|...|...| ..+..++|+|+.++|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 489999999999988766778999999999999999999999874 45566677999999999999999
Q ss_pred CCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 002901 762 NPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841 (869)
Q Consensus 762 ~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K~ 841 (869)
++ +.+.|| ++++++|+|||++++++||+||++|||....||+|| |+.+++.+|.|+.+++.+++ ..++..|.
T Consensus 449 ~~--g~~~vL-vaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e 520 (555)
T 3tbk_A 449 AS--GDNNIL-IATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKE 520 (555)
T ss_dssp -----CCSEE-EECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred cC--CCeeEE-EEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHH
Confidence 82 233564 577999999999999999999999999999999999 77789999999999999988 67778888
Q ss_pred HHHHHHHhcc
Q 002901 842 KLAREAFRRK 851 (869)
Q Consensus 842 ~l~~~~~~~~ 851 (869)
++++..+..-
T Consensus 521 ~~~~~~~~~~ 530 (555)
T 3tbk_A 521 KIMNESILRL 530 (555)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888887654
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-35 Score=362.86 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=96.7
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHhC
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA------------GFKLLRLDGSMNAKKRAQVIEEFG 761 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~------------gi~~~rldG~~~~~~R~~~i~~F~ 761 (869)
.++|+..|.++|.+.....++.|+|||++++.+++.|...|... |..+..++|+|+.++|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 48999999999998655567899999999999999999999873 667778889999999999999999
Q ss_pred CCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 002901 762 NPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841 (869)
Q Consensus 762 ~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K~ 841 (869)
++ +.+.| |++++++|+|||++++++||+||++|||..+.||+|| |+.+++.+|.|+..+++|++ ..++..|.
T Consensus 691 ~~--g~~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke 762 (797)
T 4a2q_A 691 TS--KDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKE 762 (797)
T ss_dssp -----CCSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHH
T ss_pred cc--CCceE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH-HHHHHHHH
Confidence 82 12355 5677999999999999999999999999999999999 55688999999999999999 78888999
Q ss_pred HHHHHHHhcc
Q 002901 842 KLAREAFRRK 851 (869)
Q Consensus 842 ~l~~~~~~~~ 851 (869)
.++..++..-
T Consensus 763 ~~~~~~i~~l 772 (797)
T 4a2q_A 763 EMMNKAVEKI 772 (797)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888754
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-33 Score=330.57 Aligned_cols=349 Identities=15% Similarity=0.119 Sum_probs=254.1
Q ss_pred cccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCCC
Q 002901 198 KSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGV 277 (869)
Q Consensus 198 ~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~~ 277 (869)
..+|+|||.+|+.+++.. +++||+++||+|||++++.++......
T Consensus 111 ~~~l~~~Q~~ai~~~~~~---------------------------------~~~ll~~~tGsGKT~~~~~~~~~~~~~-- 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN---------------------------------RRRILNLPTSAGRSLIQALLARYYLEN-- 155 (510)
T ss_dssp EECCCHHHHHHHHHHHHH---------------------------------SEEEEECCSTTTHHHHHHHHHHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHhc---------------------------------CCcEEEeCCCCCHHHHHHHHHHHHHhC--
Confidence 458999999999999874 368999999999999998777654310
Q ss_pred CCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEecC
Q 002901 278 APGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCP 357 (869)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P 357 (869)
..+++|||||
T Consensus 156 ----------------------------------------------------------------------~~~~vlvl~P 165 (510)
T 2oca_A 156 ----------------------------------------------------------------------YEGKILIIVP 165 (510)
T ss_dssp ----------------------------------------------------------------------CSSEEEEEES
T ss_pred ----------------------------------------------------------------------CCCeEEEEEC
Confidence 1247999999
Q ss_pred h-hHHHHHHHHHHHhcCCCCeEEEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCCc
Q 002901 358 P-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNA 436 (869)
Q Consensus 358 ~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn~ 436 (869)
. +|..||.++++++...+..++..++|............+|+|+||+++.+... ...-.|++||+||||++.+.
T Consensus 166 ~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~-----~~~~~~~liIiDE~H~~~~~ 240 (510)
T 2oca_A 166 TTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK-----EWFSQFGMMMNDECHLATGK 240 (510)
T ss_dssp SHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCG-----GGGGGEEEEEEETGGGCCHH
T ss_pred cHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEEEEeHHHHhhchh-----hhhhcCCEEEEECCcCCCcc
Confidence 7 67899999999996556678888888444333345679999999999876531 22346899999999999873
Q ss_pred ChHHHHHHhhc-ccCeEEEEecccccCChhhhHhhhhhhccCCCCchHHHHHHhccccccCChhhHHHHHHHHhhhhhhc
Q 002901 437 NAQQSRTVTNL-NAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRR 515 (869)
Q Consensus 437 ~s~~~ka~~~L-~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~ll~~~~lRR 515 (869)
...+.+..+ .+.++++||||| .+...+++++..++.+..+.. +...
T Consensus 241 --~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~----------~~~~-------------------- 287 (510)
T 2oca_A 241 --SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPV----------TTSK-------------------- 287 (510)
T ss_dssp --HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCC----------CCC---------------------
T ss_pred --cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEee----------CHHH--------------------
Confidence 344445666 677999999999 566667777776665432110 0000
Q ss_pred cCCCCCcCCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhhcccCCCccccccc
Q 002901 516 TKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSI 595 (869)
Q Consensus 516 tk~~~~~~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~il~~llrLRq~c~h~~l~~~~~~~~ 595 (869)
.. ....+++.....+.+.+++....... + ..|...+. ..
T Consensus 288 ~~--~~~~l~~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~------~~-------------- 326 (510)
T 2oca_A 288 LM--EDGQVTELKINSIFLRYPDEFTTKLK----------------G---KTYQEEIK------II-------------- 326 (510)
T ss_dssp ----------CCEEEEEEEECCHHHHHHHT----------------T---CCHHHHHH------HH--------------
T ss_pred Hh--hCCcCCCceEEEEeecCChHHhcccc----------------c---cchHHHHH------HH--------------
Confidence 00 01246677778888888876541100 0 01111000 00
Q ss_pred CCCCCccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCccc
Q 002901 596 IPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFS 675 (869)
Q Consensus 596 ~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 675 (869)
T Consensus 327 -------------------------------------------------------------------------------- 326 (510)
T 2oca_A 327 -------------------------------------------------------------------------------- 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Q 002901 676 SPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQ 755 (869)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~ 755 (869)
.....|...+.+.+..... ..+.++|||+. +..++.|...|...|.++..++|+|+.++|++
T Consensus 327 ----------------~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~ 388 (510)
T 2oca_A 327 ----------------TGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNI 388 (510)
T ss_dssp ----------------HTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHH
T ss_pred ----------------hccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHH
Confidence 0013455566666666543 34678888888 88888899999999899999999999999999
Q ss_pred HHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcc-cEEEEEEEeCCCHHH
Q 002901 756 VIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKE-DVKIVRLIVRNSIEE 831 (869)
Q Consensus 756 ~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k-~V~V~rli~~~siEe 831 (869)
+++.|+++ .+.||++|..++++|+|++.+++||+++++||++...|++||++|.|+.+ .|.+|.++...++.+
T Consensus 389 i~~~f~~g---~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~ 462 (510)
T 2oca_A 389 MKTLAENG---KGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKP 462 (510)
T ss_dssp HHHHHHHC---CSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCC
T ss_pred HHHHHhCC---CCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhh
Confidence 99999984 34777766699999999999999999999999999999999999999987 799999998765433
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.1e-33 Score=336.62 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=91.5
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcC----CcEEEEeC--------CCCHHHHHHHHHHhC
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAG----FKLLRLDG--------SMNAKKRAQVIEEFG 761 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~g----i~~~rldG--------~~~~~~R~~~i~~F~ 761 (869)
.+.|+..|.++|.+.....++.++|||++++.+++.|...|...| +++..++| +|+.++|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 478999999999987555568899999999999999999999998 89999955 999999999999999
Q ss_pred C-CCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 002901 762 N-PGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRK 840 (869)
Q Consensus 762 ~-~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K 840 (869)
+ ++ ..| |++|.++++|||++.++.||++|++||+....|++|| +|. ++..++.|+..+++++.- .++..+
T Consensus 458 ~~g~---~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~~-~~~~~~ 528 (696)
T 2ykg_A 458 ASGD---HNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEKE-QINMYK 528 (696)
T ss_dssp ---C---CSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHHH-HHHHHH
T ss_pred hcCC---ccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHHH-HHHHHH
Confidence 7 42 355 5677999999999999999999999999999999999 774 678899999998886543 333334
Q ss_pred HHHHHHHHh
Q 002901 841 KKLAREAFR 849 (869)
Q Consensus 841 ~~l~~~~~~ 849 (869)
.++++..+.
T Consensus 529 e~~~~~~~~ 537 (696)
T 2ykg_A 529 EKMMNDSIL 537 (696)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=333.97 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=119.6
Q ss_pred CcchHHHHHHHHHHhhhcCC-CCeEEEEeccHHHHHHHHHHHHHc------CCcEEEEeCC--------CCHHHHHHHHH
Q 002901 694 TSSKVSALLTLLLQLRDKKP-TTKSVVFSQFRKMLILLEEPLQAA------GFKLLRLDGS--------MNAKKRAQVIE 758 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~-~~K~lVFsq~~~~ld~l~~~L~~~------gi~~~rldG~--------~~~~~R~~~i~ 758 (869)
.+.|+..|.+.|.+.....+ +.++|||+++..+++.|...|... |+++..++|+ |+..+|.++++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 46788889998887665555 899999999999999999999987 9999999999 99999999999
Q ss_pred HhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHH
Q 002901 759 EFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQD 838 (869)
Q Consensus 759 ~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~ 838 (869)
+|+++ .+.| |++|.++++|||+++++.||+||++|||....|++||+.|-| ..++.+...++.+.....+..
T Consensus 459 ~F~~g---~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~ 530 (699)
T 4gl2_A 459 KFRTG---KINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVND 530 (699)
T ss_dssp HHCC------CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHH
T ss_pred HHhcC---CCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHH
Confidence 99994 3355 457799999999999999999999999999999999975554 456666777776666666666
Q ss_pred HHHHHHHHHHhc
Q 002901 839 RKKKLAREAFRR 850 (869)
Q Consensus 839 ~K~~l~~~~~~~ 850 (869)
.+..++...+..
T Consensus 531 ~~~~~~~~~~~~ 542 (699)
T 4gl2_A 531 FREKMMYKAIHC 542 (699)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=4.7e-30 Score=304.88 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHhhh-cCCCCeEEEEeccHHHHHHHHHHHHHcCCc--------EEEEeCCCCHHHHHHHHHHhCCCCCCC
Q 002901 697 KVSALLTLLLQLRD-KKPTTKSVVFSQFRKMLILLEEPLQAAGFK--------LLRLDGSMNAKKRAQVIEEFGNPGPGG 767 (869)
Q Consensus 697 K~~~L~~~L~~~~~-~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~--------~~rldG~~~~~~R~~~i~~F~~~~~~~ 767 (869)
+...+.+.|.+... ..++.|+|||++...+++.+...|...+.. +.+++|.++ ++|.+++++|++++. .
T Consensus 421 r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~-~ 498 (590)
T 3h1t_A 421 RTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELET-S 498 (590)
T ss_dssp THHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTC-C
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCC-C
Confidence 34444444433222 245789999999999999999999886543 778999986 479999999999543 3
Q ss_pred CEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCC---cccEEEEEEE
Q 002901 768 PTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQ---KEDVKIVRLI 824 (869)
Q Consensus 768 ~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ---~k~V~V~rli 824 (869)
..++|+|++++++|+|++.++.||+++|+||+....|++||++|+|+ +..+.|+.|+
T Consensus 499 ~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 499 TPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp CCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred CCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 47788899999999999999999999999999999999999999995 5568888887
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.2e-29 Score=280.42 Aligned_cols=124 Identities=22% Similarity=0.302 Sum_probs=106.3
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|+..|.+.+. ..+.++|||++....++.+...|...|+.+..++|+++.++|.++++.|+++ ...|| ++
T Consensus 224 ~~~~~~l~~~l~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vl-v~ 294 (367)
T 1hv8_A 224 NERFEALCRLLK-----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK---KIRIL-IA 294 (367)
T ss_dssp GGHHHHHHHHHC-----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT---SSSEE-EE
T ss_pred HHHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC---CCeEE-EE
Confidence 456666766664 3478999999999999999999999999999999999999999999999984 33555 46
Q ss_pred cCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCH
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~si 829 (869)
+.++++|+|++.+++||+++++||+....|++||++|.|+...+ +.++.+...
T Consensus 295 T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 295 TDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp CTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred CChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 69999999999999999999999999999999999999987644 555666543
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.1e-28 Score=277.52 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|...|.+++... .+.|+|||++....++.+...|...|+.+..++|+++.++|.++++.|+++ ...| |++
T Consensus 235 ~~~~~~l~~~l~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~v-lv~ 306 (391)
T 1xti_A 235 NEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF---QRRI-LVA 306 (391)
T ss_dssp GGHHHHHHHHHHHS----CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT---CCSE-EEE
T ss_pred hhHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC---CCcE-EEE
Confidence 45677777777653 478999999999999999999999999999999999999999999999984 3255 556
Q ss_pred cCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+.++++|+|++.+++||+++++||+....|++||++|.|++..+ +.|+..+
T Consensus 307 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 357 (391)
T 1xti_A 307 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE 357 (391)
T ss_dssp SCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEE--EEEECSH
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEE--EEEEccc
Confidence 79999999999999999999999999999999999999976554 4445443
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=4.6e-29 Score=274.57 Aligned_cols=117 Identities=15% Similarity=0.251 Sum_probs=98.5
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEE
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVF 791 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi 791 (869)
..+.++|||++....++.+...|. .+..++|+++..+|.+++++|+++ ...| |+++.++++|+|++.+++||
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~---~~~v-lv~T~~~~~Gid~~~~~~Vi 289 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG---EYDM-LITTDVASRGLDIPLVEKVI 289 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT---SCSE-EEECHHHHTTCCCCCBSEEE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC---CCcE-EEEcCccccCCCccCCCEEE
Confidence 447899999999999999988887 578899999999999999999984 3355 55679999999999999999
Q ss_pred EEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHH
Q 002901 792 LLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQ 837 (869)
Q Consensus 792 ~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q 837 (869)
+++++||+....|++||++|.||+..+.+|.. .+..++++|.+..
T Consensus 290 ~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 290 NFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp ESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999888777766 4455666655443
No 19
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.96 E-value=3e-28 Score=257.91 Aligned_cols=220 Identities=18% Similarity=0.130 Sum_probs=161.3
Q ss_pred CCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCccc--chHHHHHHHHHHHHhhcccCCCcccccccCCCCC
Q 002901 523 GLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMR--NYSTVLSILLRLRQICTNLALCPSDVRSIIPSNT 600 (869)
Q Consensus 523 ~LP~k~~~~v~v~ls~~e~~~Y~~l~~~~~~~~~~~~~~~~~~~--~~~~il~~llrLRq~c~h~~l~~~~~~~~~~~~~ 600 (869)
.-|++.+.++++.||+.|+++|+.+...-...+..+.+...... ....+...++.||++||||.|+.... .+...
T Consensus 19 ~~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~---~p~~~ 95 (328)
T 3hgt_A 19 SGNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHY---MPKSL 95 (328)
T ss_dssp ---CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTT---CCSCS
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhcccc---CCccc
Confidence 44999999999999999999999998776666777665433221 13467788999999999999974210 00000
Q ss_pred ccccCCChHHHHHHHHHHhcCCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcccCCCCC
Q 002901 601 IEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPES 680 (869)
Q Consensus 601 ~~~~~~~~e~~~~~~~~l~~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~ 680 (869)
...+....
T Consensus 96 -----~~~~~~~~------------------------------------------------------------------- 103 (328)
T 3hgt_A 96 -----ITRDVPAH------------------------------------------------------------------- 103 (328)
T ss_dssp -----CSTTHHHH-------------------------------------------------------------------
T ss_pred -----cccchhhH-------------------------------------------------------------------
Confidence 00000000
Q ss_pred CCcccccccccccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHh
Q 002901 681 SDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760 (869)
Q Consensus 681 ~~~~~~~~~~~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F 760 (869)
-...|+|+..|-++|..+.+ .++|+|||||++.++|+|++.|...|++|.|+||++.. .+++. .
T Consensus 104 ----------l~~~SGKf~~L~~LL~~l~~--~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~-~-- 167 (328)
T 3hgt_A 104 ----------LAENSGKFSVLRDLINLVQE--YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA-N-- 167 (328)
T ss_dssp ----------HHHTCHHHHHHHHHHHHHTT--SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-----------
T ss_pred ----------HHHcCccHHHHHHHHHHHHh--CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc-c--
Confidence 02259999999999999874 48999999999999999999999999999999999543 32221 1
Q ss_pred CCCCCCCCEEEEEecCCcccccc-----ccccCEEEEEcCCCCcchH-HHHhhhhhhc--CCcccEEEEEEEeCCCHHHH
Q 002901 761 GNPGPGGPTVLLASLKASGAGVN-----LTAASRVFLLEPWWNPAVE-EQAMDRVHRI--GQKEDVKIVRLIVRNSIEER 832 (869)
Q Consensus 761 ~~~~~~~~~VlL~S~~agg~GLN-----Lt~A~~Vi~~dp~wnp~~e-~QaigRvhRi--GQ~k~V~V~rli~~~siEe~ 832 (869)
+ ....++|++ .+||.|+| |+.|++||+||+.|||... .||+.|+||+ ||+|+|.||||++.+|||+.
T Consensus 168 -~---~~~~i~Llt-sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 168 -D---FSCTVHLFS-SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp -C---CSEEEEEEE-SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred -c---CCceEEEEE-CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 1 234777775 78888886 8999999999999999998 8999999999 78999999999999999999
Q ss_pred HHHHHH
Q 002901 833 ILELQD 838 (869)
Q Consensus 833 i~~~q~ 838 (869)
++..-+
T Consensus 243 ~l~~~~ 248 (328)
T 3hgt_A 243 RLFFGK 248 (328)
T ss_dssp HHHHHH
T ss_pred HHHccC
Confidence 998844
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=1.2e-27 Score=271.22 Aligned_cols=123 Identities=22% Similarity=0.331 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEec
Q 002901 696 SKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775 (869)
Q Consensus 696 ~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~ 775 (869)
.|+..|.+++.... ..|+|||++....++.+...|...|+.+..++|+++.++|.+++++|+++ ...| |+++
T Consensus 262 ~k~~~l~~~~~~~~----~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~v-lv~T 333 (410)
T 2j0s_A 262 WKFDTLCDLYDTLT----ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG---ASRV-LIST 333 (410)
T ss_dssp HHHHHHHHHHHHHT----SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT---SSCE-EEEC
T ss_pred hHHHHHHHHHHhcC----CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC---CCCE-EEEC
Confidence 46667777776542 56999999999999999999999999999999999999999999999984 3355 4577
Q ss_pred CCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 776 ~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
.++++|+|++.+++||++|++||+....|++||++|.|++- .++.|+..+.
T Consensus 334 ~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 334 DVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp GGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred ChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 99999999999999999999999999999999999999764 5566777654
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=1.1e-27 Score=270.54 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=107.0
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
+.|+..+.+++... .+.|+|||++....++.+...|...|+.+..++|+++.++|.++++.|+++ ...|| ++
T Consensus 243 ~~k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vL-v~ 314 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL----QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG---KVRTL-VC 314 (400)
T ss_dssp GGHHHHHHHHHHHS----CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT---SSSEE-EE
T ss_pred hhHHHHHHHHHhhc----CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC---CCcEE-EE
Confidence 45666666666653 467999999999999999999999999999999999999999999999984 33554 56
Q ss_pred cCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
+.++++|+|+++++.||++|++||+....|++||++|.|+.. .++.|+..+.
T Consensus 315 T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~ 366 (400)
T 1s2m_A 315 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND 366 (400)
T ss_dssp SSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG
T ss_pred cCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch
Confidence 699999999999999999999999999999999999999764 5566777664
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=1.5e-26 Score=260.18 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEec
Q 002901 696 SKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775 (869)
Q Consensus 696 ~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~ 775 (869)
.|...+.+++.. .++.|+|||++....++.+...|...|+.+..++|+++..+|.+++++|+++ ...| |+++
T Consensus 229 ~~~~~l~~~~~~----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~v-lv~T 300 (395)
T 3pey_A 229 DKFDVLTELYGL----MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG---RSKV-LITT 300 (395)
T ss_dssp HHHHHHHHHHTT----TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT---SCCE-EEEC
T ss_pred HHHHHHHHHHHh----ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC---CCCE-EEEC
Confidence 344444444433 3467999999999999999999999999999999999999999999999984 3355 5677
Q ss_pred CCccccccccccCEEEEEcCCC------CcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 776 KASGAGVNLTAASRVFLLEPWW------NPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 776 ~agg~GLNLt~A~~Vi~~dp~w------np~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
.++++|+|++.+++||++|++| |+....|++||++|.|++.. ++.|+..+
T Consensus 301 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 356 (395)
T 3pey_A 301 NVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV--AISFVHDK 356 (395)
T ss_dssp GGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE--EEEEECSH
T ss_pred ChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce--EEEEEech
Confidence 9999999999999999999999 99999999999999997654 44455443
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=268.47 Aligned_cols=123 Identities=23% Similarity=0.329 Sum_probs=95.4
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|+..|.+++... ++.|+|||++....++.+...|...|+.+..++|+++.++|.++++.|+++ ...| |++
T Consensus 265 ~~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~v-lv~ 336 (414)
T 3eiq_A 265 EWKLDTLCDLYETL----TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG---SSRV-LIT 336 (414)
T ss_dssp TTHHHHHHHHHHSS----CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------C-EEE
T ss_pred HhHHHHHHHHHHhC----CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC---CCcE-EEE
Confidence 34777777777653 467999999999999999999999999999999999999999999999984 3354 567
Q ss_pred cCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+.++++|+|++.++.||++|++||+....|++||++|.|+.. .++.|+.++
T Consensus 337 T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 337 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp CSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred CCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 799999999999999999999999999999999999999764 556677766
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=1.6e-28 Score=276.55 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLL 793 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~ 793 (869)
+.|+|||++....++.+...|...|+.+..++|+++.++|.++++.|+++ ...| |+++.++++|+|++.+++||++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~v-lv~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG---SSRI-LISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC---CCcE-EEECChhhcCCCcccCCEEEEe
Confidence 57999999999999999999999999999999999999999999999884 3344 5577999999999999999999
Q ss_pred cCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 794 EPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 794 dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+++|++....|++||++|.|++.. ++.|+..+
T Consensus 335 ~~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 366 (394)
T 1fuu_A 335 DLPANKENYIHRIGRGGRFGRKGV--AINFVTNE 366 (394)
T ss_dssp ----------------------------------
T ss_pred CCCCCHHHHHHHcCcccCCCCCce--EEEEEchh
Confidence 999999999999999999997654 44455554
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.94 E-value=8.4e-26 Score=257.79 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=105.2
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|...|+++|.+. +.++|||++....++.+...|...|+++..++|++++.+|.+++++|+++ ...| |++
T Consensus 286 ~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g---~~~v-Lva 356 (434)
T 2db3_A 286 YAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG---SMKV-LIA 356 (434)
T ss_dssp GGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS---SCSE-EEE
T ss_pred HHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC---CCcE-EEE
Confidence 45777888887763 34599999999999999999999999999999999999999999999984 3355 556
Q ss_pred cCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
+.++++|||+..+++||++|++|++....|++||++|.|++-. ++.|+..
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~--a~~~~~~ 406 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR--ATSFFDP 406 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEE--EEEEECT
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCE--EEEEEec
Confidence 7999999999999999999999999999999999999998654 4555663
No 26
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=7.3e-25 Score=248.13 Aligned_cols=122 Identities=23% Similarity=0.328 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|+..|.+++... .+.++|||++....++.+...|...|+.+..++|+|+.++|.++++.|+++ ...| |++
T Consensus 251 ~~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~v-lv~ 322 (412)
T 3fht_A 251 DEKFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG---KEKV-LVT 322 (412)
T ss_dssp HHHHHHHHHHHHHH----SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT---SCSE-EEE
T ss_pred HHHHHHHHHHHhhc----CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC---CCcE-EEE
Confidence 34666666666653 367999999999999999999999999999999999999999999999984 3355 556
Q ss_pred cCCccccccccccCEEEEEcCCCCc------chHHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNP------AVEEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp------~~e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
+.++++|+|++.+++||++|++|++ ....|++||++|.|+... ++.|+..
T Consensus 323 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~ 378 (412)
T 3fht_A 323 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDS 378 (412)
T ss_dssp CGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS
T ss_pred cCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCce--EEEEEcC
Confidence 7999999999999999999999987 589999999999997544 4445543
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=253.37 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=105.2
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|...|.+++... ..+.|+|||++....++.+...|...|+.+..++|+++.++|.+++++|+++ ...| |++
T Consensus 260 ~~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~v-lva 332 (417)
T 2i4i_A 260 SDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG---KSPI-LVA 332 (417)
T ss_dssp GGHHHHHHHHHHTC---CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT---SSCE-EEE
T ss_pred HhHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC---CCCE-EEE
Confidence 45666777777653 3478999999999999999999999999999999999999999999999984 3355 556
Q ss_pred cCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
+.++++|+|++.+++||++|++|++....|++||++|.|+. -.++.|+....
T Consensus 333 T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~ 384 (417)
T 2i4i_A 333 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNERN 384 (417)
T ss_dssp CHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGGG
T ss_pred CChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEcccc
Confidence 69999999999999999999999999999999999999976 45566666543
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.92 E-value=2.6e-24 Score=250.48 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEec
Q 002901 696 SKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775 (869)
Q Consensus 696 ~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~ 775 (869)
.|+..|++.|.+. ++.++|||++.....+.+...|...|+.+..++|+++.++|.++++.|+++ .+.||+ ++
T Consensus 222 ~~~~~l~~~l~~~----~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~vlV-aT 293 (523)
T 1oyw_A 222 KPLDQLMRYVQEQ----RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD---DLQIVV-AT 293 (523)
T ss_dssp SHHHHHHHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT---SCSEEE-EC
T ss_pred CHHHHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC---CCeEEE-Ee
Confidence 3455566666542 478999999999999999999999999999999999999999999999984 335555 66
Q ss_pred CCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEE
Q 002901 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820 (869)
Q Consensus 776 ~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V 820 (869)
.++|.|+|++.++.||++++++|+....|++||++|.|+...+.+
T Consensus 294 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred chhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 999999999999999999999999999999999999998765444
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.92 E-value=7e-24 Score=240.66 Aligned_cols=115 Identities=19% Similarity=0.098 Sum_probs=98.6
Q ss_pred chHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 696 SKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLL-RLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 696 ~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~-rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
.|...|.+++.+. +.++|||++.....+.+...|...|+++. .++|. +|. +++|+++ .+.||++|
T Consensus 239 ~~~~~l~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g---~~~vLvat 304 (414)
T 3oiy_A 239 RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVG---KINILIGV 304 (414)
T ss_dssp CCHHHHHHHHHHH-----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTT---SCSEEEEE
T ss_pred CHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCC---CCeEEEEe
Confidence 3556666777662 58999999999999999999999999998 88884 454 9999984 44788775
Q ss_pred ---cCCccccccccc-cCEEEEEcCC--CCcchHHHHhhhhhhcCCc--ccEEEEEEE
Q 002901 775 ---LKASGAGVNLTA-ASRVFLLEPW--WNPAVEEQAMDRVHRIGQK--EDVKIVRLI 824 (869)
Q Consensus 775 ---~~agg~GLNLt~-A~~Vi~~dp~--wnp~~e~QaigRvhRiGQ~--k~V~V~rli 824 (869)
+.++++|+|++. +++||++|++ +++....|++||++|.|+. +.-.++.|+
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred cCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 899999999999 9999999999 9999999999999999986 566777777
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.91 E-value=1.4e-23 Score=246.98 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecC
Q 002901 697 KVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLK 776 (869)
Q Consensus 697 K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~ 776 (869)
++..|++.+.+ ..++.++|||+......+.+...|...|+.+..++|+|+.++|.+++++|.++ .+.|| +++.
T Consensus 253 ~~~~l~~~l~~---~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g---~~~Vl-VAT~ 325 (591)
T 2v1x_A 253 FIEDIVKLING---RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN---EIQVV-VATV 325 (591)
T ss_dssp HHHHHHHHHTT---TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT---SSSEE-EECT
T ss_pred HHHHHHHHHHH---hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC---CCeEE-EEec
Confidence 34444444433 23578999999999999999999999999999999999999999999999984 33555 5669
Q ss_pred CccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEE
Q 002901 777 ASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIV 821 (869)
Q Consensus 777 agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~ 821 (869)
++|.|+|++.++.||++++++++....|++||++|.|+...+.++
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999999999999999999999999999999986654443
No 31
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.91 E-value=1.2e-23 Score=264.33 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=94.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAA--GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVF 791 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~--gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi 791 (869)
+.+++||++....++.+...|... ++++..++|+|+.++|++++++|+++ .+.|| +++.++++|+|++.+++||
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g---~~~VL-VaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ---RFNVL-VCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT---SCCEE-EESSTTGGGSCCTTEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC---CCcEE-EECCcceeeecccCCcEEE
Confidence 679999999999999999999987 89999999999999999999999984 33555 5669999999999999999
Q ss_pred EEcC-CCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 792 LLEP-WWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 792 ~~dp-~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
++++ .|+++...|++||++|.|+.. ++|.++..+
T Consensus 888 i~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 888 IERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp ETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred EeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 9998 699999999999999999654 455566543
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.8e-24 Score=251.61 Aligned_cols=122 Identities=16% Similarity=0.272 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|...+.+++... .+.|+|||++....++.+...|...|+.+..++|+++..+|.++++.|+++ ...| |++
T Consensus 342 ~~k~~~l~~ll~~~----~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g---~~~V-LVa 413 (508)
T 3fho_A 342 EHKYNVLVELYGLL----TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG---TSKV-LVT 413 (508)
T ss_dssp HHHHHHHHHHHC-------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS---SCCC-CEE
T ss_pred HHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC---CCeE-EEe
Confidence 34555555555442 367999999999999999999999999999999999999999999999884 3354 556
Q ss_pred cCCccccccccccCEEEEEcCC------CCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 775 LKASGAGVNLTAASRVFLLEPW------WNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~------wnp~~e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
+.++++|+|++.++.||++|++ +++....|++||++|.|+...+ +.|+..
T Consensus 414 T~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~--i~l~~~ 469 (508)
T 3fho_A 414 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS--INFVHD 469 (508)
T ss_dssp CC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEE--EEEECT
T ss_pred CChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEE--EEEEeC
Confidence 7999999999999999999999 7899999999999999965544 444553
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.91 E-value=4.1e-23 Score=244.45 Aligned_cols=110 Identities=17% Similarity=0.304 Sum_probs=97.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccC
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQAA---GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAAS 788 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~~---gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~ 788 (869)
.++.++|||+......+.+...|... |+.+..++|+|++.+|..++++|+++ ...|| +++.++++|||++.++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g---~~~vL-VaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD---ESGIL-VCTDVGARGMDFPNVH 361 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC---SSEEE-EECGGGTSSCCCTTCC
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC---CCeEE-EEcchhhcCCCcccCC
Confidence 55789999999999999999999987 99999999999999999999999984 33655 5669999999999999
Q ss_pred EEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 789 RVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 789 ~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+||++|+++++....|++||++|.|+.- .++.|+..+
T Consensus 362 ~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~ 398 (579)
T 3sqw_A 362 EVLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD 398 (579)
T ss_dssp EEEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG
T ss_pred EEEEcCCCCCHHHhhhhccccccCCCCc--eEEEEEccc
Confidence 9999999999999999999999999754 444455554
No 34
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.90 E-value=2.5e-22 Score=237.12 Aligned_cols=110 Identities=17% Similarity=0.304 Sum_probs=97.3
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccC
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQAA---GFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAAS 788 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~~---gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~ 788 (869)
.++.++|||++.....+.+...|... |+.+..++|+|++.+|..+++.|+++ .+.|| ++|.+++.|||++.++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g---~~~vL-vaT~~~~~GiDip~v~ 412 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD---ESGIL-VCTDVGARGMDFPNVH 412 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC---SSEEE-EECGGGTSSCCCTTCC
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC---CCCEE-EEcchhhcCCCcccCC
Confidence 45789999999999999999999987 99999999999999999999999984 33555 5669999999999999
Q ss_pred EEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 789 RVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 789 ~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+||++|+++++....|++||++|.|+.- .++.|+..+
T Consensus 413 ~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~ 449 (563)
T 3i5x_A 413 EVLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD 449 (563)
T ss_dssp EEEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG
T ss_pred EEEEECCCCchhhhhhhcCccccCCCCc--eEEEEEchh
Confidence 9999999999999999999999999654 455566655
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=241.28 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecC
Q 002901 697 KVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLK 776 (869)
Q Consensus 697 K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~ 776 (869)
|...|.+++... ...++|||++.....+.+...|...|+.+..++|+++..+|..+++.|+++ ...| |+++.
T Consensus 320 ~~~~l~~~~~~~----~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g---~~~i-Lv~T~ 391 (479)
T 3fmp_B 320 KFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG---KEKV-LVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhc----cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC---CCcE-EEEcc
Confidence 444444444432 356899999999999999999999999999999999999999999999984 3355 55669
Q ss_pred CccccccccccCEEEEEcCCCCc------chHHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 777 ASGAGVNLTAASRVFLLEPWWNP------AVEEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 777 agg~GLNLt~A~~Vi~~dp~wnp------~~e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
+++.|||++.++.||++|++|++ ....|++||++|.|+.-. ++.|+..
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~--~i~~~~~ 445 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDS 445 (479)
T ss_dssp --------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCce--EEEEEcC
Confidence 99999999999999999999876 589999999999996544 3444443
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-21 Score=242.70 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCc-----------------------------------
Q 002901 696 SKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFK----------------------------------- 740 (869)
Q Consensus 696 ~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~----------------------------------- 740 (869)
.++..+++.+... ...++|||+......+.+...|...|+.
T Consensus 329 ~~l~~l~~~l~~~----~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 404 (1010)
T 2xgj_A 329 GDIYKIVKMIWKK----KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 404 (1010)
T ss_dssp CHHHHHHHHHHHH----TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 4566666666542 2569999999999999998888765442
Q ss_pred ----EEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEE----EcC----CCCcchHHHHhhh
Q 002901 741 ----LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFL----LEP----WWNPAVEEQAMDR 808 (869)
Q Consensus 741 ----~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~----~dp----~wnp~~e~QaigR 808 (869)
+..++|+|+..+|..+++.|+++ .++||+ +|.+++.|+|+++.+.||. ||. +|+|....|++||
T Consensus 405 l~~gI~~~Hggl~~~eR~~ve~~F~~G---~ikVLV-AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GR 480 (1010)
T 2xgj_A 405 LRRGIGIHHSGLLPILKEVIEILFQEG---FLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGR 480 (1010)
T ss_dssp HHHTEEEESTTSCHHHHHHHHHHHHTT---CCSEEE-EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTT
T ss_pred HhCCeeEECCCCCHHHHHHHHHHHhcC---CCcEEE-EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhh
Confidence 77899999999999999999984 446655 5599999999999999999 999 9999999999999
Q ss_pred hhhcCCcccEEEEEEEeCCC
Q 002901 809 VHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 809 vhRiGQ~k~V~V~rli~~~s 828 (869)
++|.|+....+++.++..+.
T Consensus 481 AGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 481 AGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp BCCTTTCSSEEEEEEECSCC
T ss_pred cccCCCCCceEEEEEECCCC
Confidence 99999998899999998764
No 37
>2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-24 Score=196.92 Aligned_cols=116 Identities=36% Similarity=0.692 Sum_probs=108.6
Q ss_pred cceEEEEEEeEEEEEEeeccccCCCCeEEEEecCCCcCCCccEEEecCCCCeEeeeechhhhhhhccccCCceEEEEEEe
Q 002901 25 ETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGIVP 104 (869)
Q Consensus 25 ~~~~~g~~~~~ivg~~~~~g~~~~~~~~~l~rep~n~~d~~ai~v~~~~g~~~G~i~~~~a~~L~plld~~~v~~e~~v~ 104 (869)
+.++||++.++|+|++||+|.++.|+.|.|+|||+||||+|||+|.|..|.+|||||+..|..|+|+||.|.+.++|+++
T Consensus 7 ~~~l~g~~~~~I~G~ry~~g~l~~G~~l~L~REp~N~yD~nAI~V~~~~g~~vGYvPr~~a~~la~lmD~g~~~veg~v~ 86 (122)
T 2l1i_A 7 DSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALAYIMDNKLAQIEGVVP 86 (122)
T ss_dssp TTCCCCBCCCCBCCSTTTTSCCCSSSCEECCCCTTCTTHHHHHHCCCTTBGGGGGHHHHHHHHHHHHTTSCCEEEEEECC
T ss_pred eeEEEeEEEEEEEEEecccCCCCCCCEEEEEECCCCCCChhHEEEECCCCCEEEEecHHHHHHHHhhccCCeEEEEEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cCCCCCCceeeeEEEEEEeChhhHHHHHHHHHhCCccc
Q 002901 105 NTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQL 142 (869)
Q Consensus 105 ~~~~~~~~~~l~i~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (869)
. +.. +.|.+||++.+|++++.++.|.++|+++|+.|
T Consensus 87 ~-g~~-~~~~~pi~l~~~~~~~~~~~~~~~~~~~g~~l 122 (122)
T 2l1i_A 87 F-GAN-NAFTMPLHMTFWGKEENRKAVSDQLKKHGFKL 122 (122)
T ss_dssp T-TTT-TTCCCCCEEEEEECHHHHHHHHHHHHHHCCCC
T ss_pred c-CCC-CCCceeEEEEEEeChhHHHHHHHHHHhhCccC
Confidence 3 222 67899999999999999999999999999864
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.6e-22 Score=243.01 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=73.1
Q ss_pred HHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCC-CCcchH
Q 002901 727 LILLEEPLQA---AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPW-WNPAVE 802 (869)
Q Consensus 727 ld~l~~~L~~---~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~-wnp~~e 802 (869)
++.+...|.. .|+.+..++|+|+.++|.+++++|+++ .+.| |++|.++++|+|++.++.||+++++ |+.+..
T Consensus 599 a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G---~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l 674 (780)
T 1gm5_A 599 AVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG---RYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQL 674 (780)
T ss_dssp HHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT---SSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC---CCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHH
Confidence 4555666666 477889999999999999999999984 3355 5577999999999999999999998 578999
Q ss_pred HHHhhhhhhcCCcccEEE
Q 002901 803 EQAMDRVHRIGQKEDVKI 820 (869)
Q Consensus 803 ~QaigRvhRiGQ~k~V~V 820 (869)
.|++||++|.|+.-.+.+
T Consensus 675 ~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 675 HQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHHHHTSCCSSTTCEEEC
T ss_pred HHHhcccCcCCCCCEEEE
Confidence 999999999997655443
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=6.5e-21 Score=230.61 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHc------------------------------CCcEEEEeCCCCHHHHHHHHHHhCCC
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAA------------------------------GFKLLRLDGSMNAKKRAQVIEEFGNP 763 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~------------------------------gi~~~rldG~~~~~~R~~~i~~F~~~ 763 (869)
+.++|||+......+.+...|... +..+..++|+++.++|..+.+.|+++
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 679999999999888888777642 13466799999999999999999984
Q ss_pred CCCCCEEEEEecCCccccccccccCEEEE----Ec---CCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHH
Q 002901 764 GPGGPTVLLASLKASGAGVNLTAASRVFL----LE---PWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831 (869)
Q Consensus 764 ~~~~~~VlL~S~~agg~GLNLt~A~~Vi~----~d---p~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe 831 (869)
.++|++ +|.+++.|+|+++.+.||. || ++++++...|++||++|.|+.++-.+|.++..+..+.
T Consensus 322 ---~~~vlv-aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 322 ---NIKVVV-ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp ---SCCEEE-ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred ---CCeEEE-ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 446655 6699999999999999988 66 7899999999999999999999999999998877554
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.86 E-value=1.2e-20 Score=228.84 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=98.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHc------------------C---------------CcEEEEeCCCCHHHHHHHHHHh
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAA------------------G---------------FKLLRLDGSMNAKKRAQVIEEF 760 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~------------------g---------------i~~~rldG~~~~~~R~~~i~~F 760 (869)
+.++|||+......+.+...|... + ..+..++|+++.++|..+.+.|
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 689999999999988888887653 1 2488899999999999999999
Q ss_pred CCCCCCCCEEEEEecCCccccccccccCEEEE----Ec----CCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHH
Q 002901 761 GNPGPGGPTVLLASLKASGAGVNLTAASRVFL----LE----PWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEE 831 (869)
Q Consensus 761 ~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~----~d----p~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe 831 (869)
+++ .++||+ +|.+++.|+|+++.+.||. || .+++++...|++||++|.|+.++-.+|.++..+..+.
T Consensus 317 ~~g---~~~vlv-aT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 317 RKG---IIKAVV-ATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HTT---SSCEEE-ECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HCC---CCeEEE-ECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 984 446655 5699999999999998887 77 6899999999999999999999999999998887654
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.85 E-value=6.9e-20 Score=222.27 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=91.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcC------------------------------------CcEEEEeCCCCHHHHHHHH
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAG------------------------------------FKLLRLDGSMNAKKRAQVI 757 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~g------------------------------------i~~~rldG~~~~~~R~~~i 757 (869)
+.++|||+......+.+...|.... ..+..++|+++.++|..+.
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 6789999999888888888877542 3478899999999999999
Q ss_pred HHhCCCCCCCCEEEEEecCCccccccccccCEEEE----Ec-------CCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 758 EEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFL----LE-------PWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 758 ~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~----~d-------p~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
+.|+++ .++|++ +|.+++.|+|+++.+.||. || .+++++...|++||++|.|+.++-.+|+++..
T Consensus 332 ~~f~~g---~~~vlv-aT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 332 EGFRQR---KIKVIV-ATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHTT---CSCEEE-ECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHcC---CCeEEE-EChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 999984 446655 5699999999999999998 89 79999999999999999999999999999877
Q ss_pred CC
Q 002901 827 NS 828 (869)
Q Consensus 827 ~s 828 (869)
..
T Consensus 408 ~~ 409 (715)
T 2va8_A 408 KE 409 (715)
T ss_dssp GG
T ss_pred ch
Confidence 65
No 42
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.2e-20 Score=230.85 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCc----------------------------------
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFK---------------------------------- 740 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~---------------------------------- 740 (869)
..++..++..+.. .++.++|||+......+.+...|...|+.
T Consensus 426 ~~~l~~li~~l~~----~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 501 (1108)
T 3l9o_A 426 KGDIYKIVKMIWK----KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILP 501 (1108)
T ss_dssp HHHHHHHHHHHHH----TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTH
T ss_pred hhHHHHHHHHHHh----cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHH
Confidence 3445555555544 34679999999999999988887654333
Q ss_pred -----EEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcch--------HHHHhh
Q 002901 741 -----LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAV--------EEQAMD 807 (869)
Q Consensus 741 -----~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~--------e~Qaig 807 (869)
+..++|+|++.+|..+++.|+++ .+.||+ +|.+++.|||+++.+.||.++.+|++.. ..|++|
T Consensus 502 ~l~~gV~~~Hg~l~~~~R~~v~~~F~~G---~ikVLV-AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~G 577 (1108)
T 3l9o_A 502 LLRRGIGIHHSGLLPILKEVIEILFQEG---FLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSG 577 (1108)
T ss_dssp HHHHTEEEECSCSCHHHHHHHHHHHHHT---CCCEEE-EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHH
T ss_pred hhhcCeeeecCCCCHHHHHHHHHHHhCC---CCeEEE-ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhc
Confidence 68899999999999999999984 446665 5599999999999999998888776654 899999
Q ss_pred hhhhcCCcccEEEEEEEeCCCHHHHH
Q 002901 808 RVHRIGQKEDVKIVRLIVRNSIEERI 833 (869)
Q Consensus 808 RvhRiGQ~k~V~V~rli~~~siEe~i 833 (869)
|++|.|+....++|.++..+..+..+
T Consensus 578 RAGR~G~d~~G~~ill~~~~~~~~~~ 603 (1108)
T 3l9o_A 578 RAGRRGLDDRGIVIMMIDEKMEPQVA 603 (1108)
T ss_dssp HSCCSSSCSSEEEEEEECCCCCHHHH
T ss_pred ccCCCCCCCceEEEEEecCCcCHHHH
Confidence 99999999999999998877444333
No 43
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.83 E-value=2e-19 Score=222.91 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCC-----------------------------------
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGF----------------------------------- 739 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi----------------------------------- 739 (869)
..++..|++.|... ...++|||+......+.+...|...|+
T Consensus 321 ~~~~~~li~~l~~~----~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 396 (997)
T 4a4z_A 321 KKTWPEIVNYLRKR----ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRS 396 (997)
T ss_dssp TTHHHHHHHHHHHT----TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHH
Confidence 45677888887753 467999999999999999988877665
Q ss_pred ----cEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCC---------CcchHHHHh
Q 002901 740 ----KLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWW---------NPAVEEQAM 806 (869)
Q Consensus 740 ----~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~w---------np~~e~Qai 806 (869)
.+..++|+|++.+|..+++.|+++ .++||+ +|.+++.|||+++ .+||+++..+ ++....|++
T Consensus 397 ~l~~gi~~~H~gl~~~~R~~v~~~F~~G---~~kVLv-AT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 397 LLERGIAVHHGGLLPIVKELIEILFSKG---FIKVLF-ATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMA 471 (997)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTT---CCSEEE-ECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHH
T ss_pred HhhcCeeeecCCCCHHHHHHHHHHHHCC---CCcEEE-EchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHh
Confidence 478999999999999999999984 346655 5699999999999 6666655544 899999999
Q ss_pred hhhhhcCCcccEEEEEEEeCCCHHHHH
Q 002901 807 DRVHRIGQKEDVKIVRLIVRNSIEERI 833 (869)
Q Consensus 807 gRvhRiGQ~k~V~V~rli~~~siEe~i 833 (869)
||++|.|+...-+++.+...+..++.+
T Consensus 472 GRAGR~G~~~~G~vi~l~~~~~~~~~~ 498 (997)
T 4a4z_A 472 GRAGRRGLDSTGTVIVMAYNSPLSIAT 498 (997)
T ss_dssp GGGCCTTTCSSEEEEEECCSSCCCHHH
T ss_pred cccccCCCCcceEEEEecCCCcchHHH
Confidence 999999999998888888655544443
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.82 E-value=1.5e-19 Score=222.57 Aligned_cols=106 Identities=9% Similarity=0.060 Sum_probs=82.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcC------------CcE-EEEeCC----------C----------CH----------
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAG------------FKL-LRLDGS----------M----------NA---------- 750 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~g------------i~~-~rldG~----------~----------~~---------- 750 (869)
+.|++||+.....+..+...|...+ +++ +.++|+ + +.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 5689999999999999888887754 454 445542 2 22
Q ss_pred -------------------HHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhh
Q 002901 751 -------------------KKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHR 811 (869)
Q Consensus 751 -------------------~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhR 811 (869)
..|..++++|+++ .++||+++ ....+|++.+.. +++++|.+.+.....||+||+.|
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g---~i~ILIvv-d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR 691 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ---DIDLLIVV-GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNR 691 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT---SSSEEEES-STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcC---CCeEEEEc-chHHhCcCcccc-cEEEEccCCCccceeehhhccCc
Confidence 1488999999984 34776654 888899999999 67888999999999999999999
Q ss_pred cCCc-cc-EEEEEEE
Q 002901 812 IGQK-ED-VKIVRLI 824 (869)
Q Consensus 812 iGQ~-k~-V~V~rli 824 (869)
.+.. |+ ..|+.|+
T Consensus 692 ~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 692 IYDATKTFGNIVTFR 706 (1038)
T ss_dssp CCCTTCCSEEEEESS
T ss_pred CCCCCCCcEEEEEcc
Confidence 9974 44 6677666
No 45
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=1.6e-19 Score=193.71 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=125.7
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCCCC
Q 002901 199 SELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVA 278 (869)
Q Consensus 199 ~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~~~ 278 (869)
.+|+|||.+|+.+++.. +.+||+++||+|||+++++++......
T Consensus 112 ~~l~~~Q~~ai~~~l~~---------------------------------~~~ll~~~tGsGKT~~~~~~~~~~~~~--- 155 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN---------------------------------RRRILNLPTSAGRSLIQALLARYYLEN--- 155 (282)
T ss_dssp CCCCHHHHHHHHHHHHH---------------------------------SEEEECCCTTSCHHHHHHHHHHHHHHH---
T ss_pred cCccHHHHHHHHHHHhc---------------------------------CCeEEEcCCCCCcHHHHHHHHHHHHHc---
Confidence 47999999999998874 358999999999999998887654310
Q ss_pred CCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEecCh
Q 002901 279 PGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPP 358 (869)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~ 358 (869)
..+++|||||.
T Consensus 156 ---------------------------------------------------------------------~~~~~lil~Pt 166 (282)
T 1rif_A 156 ---------------------------------------------------------------------YEGKILIIVPT 166 (282)
T ss_dssp ---------------------------------------------------------------------CSSEEEEECSS
T ss_pred ---------------------------------------------------------------------CCCeEEEEECC
Confidence 22469999997
Q ss_pred -hHHHHHHHHHHHhcCCCCeEEEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCCcC
Q 002901 359 -SVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNAN 437 (869)
Q Consensus 359 -sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn~~ 437 (869)
+|+.||.+++.++.......+..++|............+|+|+||+++.+... ...-+|++||+||||++.++
T Consensus 167 ~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~-----~~~~~~~~vIiDEaH~~~~~- 240 (282)
T 1rif_A 167 TALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK-----EWFSQFGMMMNDECHLATGK- 240 (282)
T ss_dssp HHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCG-----GGGGGEEEEEEETGGGCCHH-
T ss_pred HHHHHHHHHHHHHhcccccceEEEEeCCCcchhhhccCCcEEEEchHHHHhhHH-----HHHhhCCEEEEECCccCCcc-
Confidence 78899999999998655566666666333333445678999999999976532 12346789999999999864
Q ss_pred hHHHHHHhhc-ccCeEEEEecccccCChhhhHhhhhhhcc
Q 002901 438 AQQSRTVTNL-NAKRRWVVTGTPIQNGSFDLFSLMAFLQF 476 (869)
Q Consensus 438 s~~~ka~~~L-~a~~r~~LTGTPi~N~l~DL~sll~fL~~ 476 (869)
.....+..+ .+.++++|||||. |...+++.++.++.+
T Consensus 241 -~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 241 -SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp -HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred -cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 444455666 6889999999995 556888888887765
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.79 E-value=7e-18 Score=210.82 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe-
Q 002901 697 KVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLL-RLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS- 774 (869)
Q Consensus 697 K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~-rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S- 774 (869)
|...|.++|... +.++|||++.....+.+...|...|++.. .++| +|.+ +++|+++ ...||++|
T Consensus 297 k~~~L~~ll~~~-----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G---~~~VLVata 362 (1104)
T 4ddu_A 297 SKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVG---KINILIGVQ 362 (1104)
T ss_dssp CHHHHHHHHHHH-----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHT---SCSEEEEET
T ss_pred HHHHHHHHHHhc-----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCC---CCCEEEEec
Confidence 555666666652 47999999999999999999999999998 8998 2555 9999984 44787774
Q ss_pred --cCCccccccccc-cCEEEEEcCCC
Q 002901 775 --LKASGAGVNLTA-ASRVFLLEPWW 797 (869)
Q Consensus 775 --~~agg~GLNLt~-A~~Vi~~dp~w 797 (869)
+.+++.|||+.. .+.||++|++-
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCC
Confidence 899999999999 99999999997
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=1.3e-17 Score=208.51 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=90.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe---cCCcccccccccc-CE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS---LKASGAGVNLTAA-SR 789 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S---~~agg~GLNLt~A-~~ 789 (869)
+.++|||++.....+.+...|... ++...++|++ .+++++|+++ ...||+++ +.++++|||+..+ ++
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G---~~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEG---EIDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHT---SCSEEEEECC------CCSCCTTTCCE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcC---CCcEEEEecCCCCeeEeccccCCcccE
Confidence 578999999999999999999988 9999999997 3789999984 44788875 8999999999995 99
Q ss_pred EEEEcCC-----------------------------------------------------------------------CC
Q 002901 790 VFLLEPW-----------------------------------------------------------------------WN 798 (869)
Q Consensus 790 Vi~~dp~-----------------------------------------------------------------------wn 798 (869)
||++|++ .+
T Consensus 346 VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 425 (1054)
T 1gku_B 346 AVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPD 425 (1054)
T ss_dssp EEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEEC
T ss_pred EEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCc
Confidence 9999999 78
Q ss_pred cchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 002901 799 PAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK 841 (869)
Q Consensus 799 p~~e~QaigRvhRiGQ~k~V~V~rli~~~siEe~i~~~q~~K~ 841 (869)
+....|++||+.|.|.......+-|+..+ |++++...+++.
T Consensus 426 ~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l 466 (1054)
T 1gku_B 426 LRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERA 466 (1054)
T ss_dssp HHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHH
T ss_pred HHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHH
Confidence 89999999999999877432344445555 344555444443
No 48
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.70 E-value=8.6e-17 Score=158.84 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=109.1
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEE
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~ 773 (869)
.+.|+.+|.++|... ++.|+|||+++...++.+...|...|+++..++|+|+..+|..+++.|+++ .+.||+
T Consensus 15 ~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g---~~~vLv- 86 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF---QRRILV- 86 (172)
T ss_dssp GGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT---SCSEEE-
T ss_pred hHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC---CCcEEE-
Confidence 478999999999864 467999999999999999999999999999999999999999999999984 336655
Q ss_pred ecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 774 SLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 774 S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
++.++++|+|++.+++||++|++||+....|++||++|.|++.. ++.|+..
T Consensus 87 aT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~ 137 (172)
T 1t5i_A 87 ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL--AITFVSD 137 (172)
T ss_dssp ESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCE--EEEEECS
T ss_pred ECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcE--EEEEEcC
Confidence 56999999999999999999999999999999999999998654 4445544
No 49
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.70 E-value=8.4e-17 Score=157.47 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=110.4
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 693 FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 693 ~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+.|+..|.++|... ++.|+|||++....++.+...|...|+++..++|+|+..+|..++++|+++ ...||
T Consensus 18 ~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g---~~~vl- 89 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG---EYRYL- 89 (163)
T ss_dssp CGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT---SCSEE-
T ss_pred ChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC---CCeEE-
Confidence 3478999999999864 367999999999999999999999999999999999999999999999984 33555
Q ss_pred EecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 773 ~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+++.++++|+|++.+++||++|++||+....|++||++|.||+.. ++.|+...
T Consensus 90 v~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~ 142 (163)
T 2hjv_A 90 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK--AISFVTAF 142 (163)
T ss_dssp EECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE--EEEEECGG
T ss_pred EECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce--EEEEecHH
Confidence 566999999999999999999999999999999999999998755 45566554
No 50
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.69 E-value=4.4e-17 Score=162.85 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=97.1
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 693 FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 693 ~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+.|+.+|.++|... .++.|+|||++....++.+...|...|+.+..++|+|+..+|.+++++|+++ .+.||+
T Consensus 28 ~~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g---~~~vLv 101 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG---KSPILV 101 (185)
T ss_dssp CGGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT---SSSEEE
T ss_pred CcHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC---CCeEEE
Confidence 3578999999999874 3578999999999999999999999999999999999999999999999984 336555
Q ss_pred EecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 773 ~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
++.++++|+|++.++.||++|++||+....|++||++|.|++. .++.|+...
T Consensus 102 -aT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 102 -ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp -EEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred -EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 5599999999999999999999999999999999999999764 455666654
No 51
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=7.2e-17 Score=168.02 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=108.4
Q ss_pred ccccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCC
Q 002901 197 IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAG 276 (869)
Q Consensus 197 ~~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~ 276 (869)
...+|+|||++++.+++.. +.+|++++||+|||+++++++...
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~---------------------------------~~~ll~~~tG~GKT~~a~~~~~~~---- 132 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVD---------------------------------KRGCIVLPTGSGKTHVAMAAINEL---- 132 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTT---------------------------------SEEEEEESSSTTHHHHHHHHHHHS----
T ss_pred CCCCcCHHHHHHHHHHHhC---------------------------------CCEEEEeCCCCCHHHHHHHHHHHc----
Confidence 4468999999999987652 248999999999999999888653
Q ss_pred CCCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEec
Q 002901 277 VAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVC 356 (869)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~ 356 (869)
.+++||||
T Consensus 133 ------------------------------------------------------------------------~~~~liv~ 140 (237)
T 2fz4_A 133 ------------------------------------------------------------------------STPTLIVV 140 (237)
T ss_dssp ------------------------------------------------------------------------CSCEEEEE
T ss_pred ------------------------------------------------------------------------CCCEEEEe
Confidence 13589999
Q ss_pred Ch-hHHHHHHHHHHHhcCCCCeE-EEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccC
Q 002901 357 PP-SVFSTWITQLEEHTVPGMLK-TYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIK 434 (869)
Q Consensus 357 P~-sll~qW~~Ei~~~~~~~~l~-v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ik 434 (869)
|. +++.||.+++.+ + .++ +..++|... ...+|+|+||+.+....... .-.|++||+||||++.
T Consensus 141 P~~~L~~q~~~~~~~-~---~~~~v~~~~g~~~------~~~~i~v~T~~~l~~~~~~~-----~~~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 141 PTLALAEQWKERLGI-F---GEEYVGEFSGRIK------ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLP 205 (237)
T ss_dssp SSHHHHHHHHHHHGG-G---CGGGEEEESSSCB------CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEECSSCCC
T ss_pred CCHHHHHHHHHHHHh-C---CCCeEEEEeCCCC------CcCCEEEEeHHHHHhhHHHh-----cccCCEEEEECCccCC
Confidence 98 788999999999 4 245 778888443 25689999999998765321 1358899999999998
Q ss_pred CcChHHHHHHhhcccCeEEEEecccccCC
Q 002901 435 NANAQQSRTVTNLNAKRRWVVTGTPIQNG 463 (869)
Q Consensus 435 n~~s~~~ka~~~L~a~~r~~LTGTPi~N~ 463 (869)
+... .+.+..+.+.++++|||||..+.
T Consensus 206 ~~~~--~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 206 AESY--VQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp TTTH--HHHHHTCCCSEEEEEEESCC---
T ss_pred ChHH--HHHHHhccCCEEEEEecCCCCCC
Confidence 7542 34455668899999999998764
No 52
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=158.73 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=105.8
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEE
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~ 773 (869)
.+.|+..|.++|... +.|+|||+++...++.+...|...|+++..++|+|+.++|.+++++|+++ .+.|| +
T Consensus 39 ~~~K~~~L~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g---~~~vL-v 109 (191)
T 2p6n_A 39 EEAKMVYLLECLQKT-----PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG---KKDVL-V 109 (191)
T ss_dssp GGGHHHHHHHHHTTS-----CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT---SCSEE-E
T ss_pred hHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC---CCEEE-E
Confidence 468999999888742 46899999999999999999999999999999999999999999999984 33555 5
Q ss_pred ecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 774 SLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 774 S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
++.++++|+|++.+++||++|++||+....|++||++|.|++.. ++.|+...
T Consensus 110 aT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 110 ATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp ECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred EcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 66999999999999999999999999999999999999999764 45566654
No 53
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.65 E-value=5.1e-16 Score=152.22 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEec
Q 002901 696 SKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASL 775 (869)
Q Consensus 696 ~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~ 775 (869)
.|+.+|.+++... ++.|+|||++....++.+...|...|+.+..++|+|+..+|..+++.|+++ ...||+ ++
T Consensus 16 ~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv-~T 87 (165)
T 1fuk_A 16 YKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG---SSRILI-ST 87 (165)
T ss_dssp GHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT---SCSEEE-EE
T ss_pred hHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC---CCEEEE-Ec
Confidence 4999999998864 468999999999999999999999999999999999999999999999984 336655 55
Q ss_pred CCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCH
Q 002901 776 KASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829 (869)
Q Consensus 776 ~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~si 829 (869)
.++++|+|++.+++||++|++||+....|++||++|.|+.. .++.|+..+..
T Consensus 88 ~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~~~~~~~~ 139 (165)
T 1fuk_A 88 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNEDV 139 (165)
T ss_dssp GGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETTTH
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEEcchHH
Confidence 99999999999999999999999999999999999999765 45667777754
No 54
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=99.64 E-value=5e-16 Score=137.28 Aligned_cols=89 Identities=26% Similarity=0.347 Sum_probs=77.6
Q ss_pred EEEEEeEEEEEEeeccc------cCCCCeEEEEecCCCcCCCccEEEecCCCCeEeeeechhhhhhhccccCCceEEEEE
Q 002901 29 LGFVIANIVGLQYYSGT------ISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGI 102 (869)
Q Consensus 29 ~g~~~~~ivg~~~~~g~------~~~~~~~~l~rep~n~~d~~ai~v~~~~g~~~G~i~~~~a~~L~plld~~~v~~e~~ 102 (869)
.|-+.+.|+|++||+|. ++.|+.|.|+|||+||||+|||+|.+..|.+|||||+..+..|+|+||.|. .++|+
T Consensus 6 ~~l~~f~IaG~ryy~g~~~~~~~L~~Ge~l~L~rEp~N~yD~nAI~V~~~~g~kvGYvPr~~a~~la~lmd~g~-~l~a~ 84 (109)
T 3k2y_A 6 VALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQ-RLYGI 84 (109)
T ss_dssp EEEEEEEEECGGGCTTHHHHTTSCCTTCEEEEEECTTCSSCTTCEEEECTTCCEEEEECGGGHHHHHHHHHTTC-EEEEE
T ss_pred EEEEEEEEEeEEeecchhhhhhcCCCCCEEEEEECCCCcCChhHEEEEeCCCCEEEEecHHHHHHHHHHhhCCC-EEEEE
Confidence 36689999999999984 489999999999999999999999999999999999999999999999996 79999
Q ss_pred EecCCCCCCceeeeEEEEEE
Q 002901 103 VPNTRSKGNRFKIPCQVHIF 122 (869)
Q Consensus 103 v~~~~~~~~~~~l~i~i~~~ 122 (869)
|....... .++.+++|
T Consensus 85 V~~v~~~~----~~l~~~~~ 100 (109)
T 3k2y_A 85 VTVLDQQK----QHLELMLW 100 (109)
T ss_dssp EEECCTTT----TCCEEEEE
T ss_pred EEEECCCC----ceeEeeee
Confidence 97765542 34455555
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.64 E-value=5.1e-16 Score=176.28 Aligned_cols=99 Identities=22% Similarity=0.142 Sum_probs=83.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCE----
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASR---- 789 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~---- 789 (869)
+.++|||++.....+.+...|...|+++..++|. +|.+++++|+++ .+.|| ++|.+.++|+|+. ..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g---~~~vL-VaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE---KWDFV-ITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS---CCSEE-EECGGGGTSCCCC-CSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC---CCeEE-EECchHHcCcccC-CcEEEec
Confidence 4589999999999999999999999999999997 588899999984 33554 5669999999998 544
Q ss_pred -------------EEEEcCCCCcchHHHHhhhhhhcCCcc-cEEEE
Q 002901 790 -------------VFLLEPWWNPAVEEQAMDRVHRIGQKE-DVKIV 821 (869)
Q Consensus 790 -------------Vi~~dp~wnp~~e~QaigRvhRiGQ~k-~V~V~ 821 (869)
||+++.+.+++...|++||++|.|... .+.+|
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 577889999999999999999999644 34433
No 56
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=148.62 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=104.5
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..|+.+|.+++... ++.|+|||+++...++.+...|...|+.+..++|+|+..+|..+++.|+++ .+.|| ++
T Consensus 19 ~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g---~~~vL-va 90 (175)
T 2rb4_A 19 KDKYQALCNIYGSI----TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG---KEKVL-IT 90 (175)
T ss_dssp HHHHHHHHHHHTTS----CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT---SCSEE-EE
T ss_pred HhHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC---CCeEE-EE
Confidence 45999999888753 467999999999999999999999999999999999999999999999984 33555 56
Q ss_pred cCCccccccccccCEEEEEcCC------CCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 775 LKASGAGVNLTAASRVFLLEPW------WNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~------wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
+.++++|+|++.+++||++|++ +++....|++||++|.|+. -.++.|+..+.
T Consensus 91 T~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 91 TNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred ecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 6999999999999999999999 5668899999999999964 56677887765
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.60 E-value=2.4e-14 Score=185.38 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=65.9
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcC-----------CCCcchHHHHhh
Q 002901 739 FKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEP-----------WWNPAVEEQAMD 807 (869)
Q Consensus 739 i~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp-----------~wnp~~e~Qaig 807 (869)
..+..++|+++..+|..+.+.|++ +.++||++| .+.+.|+||++-. ||+.+. +.++....|++|
T Consensus 1214 ~GIa~hHagL~~~~R~~VE~lF~~---G~i~VLvaT-~tlA~GVnlPa~~-VVI~~~~~~dg~~~~~~~~s~~~~~Qm~G 1288 (1724)
T 4f92_B 1214 NGVGYLHEGLSPMERRLVEQLFSS---GAIQVVVAS-RSLCWGMNVAAHL-VIIMDTQYYNGKIHAYVDYPIYDVLQMVG 1288 (1724)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHH---TSBCEEEEE-GGGSSSCCCCBSE-EEEECSEEEETTTTEEEECCHHHHHHHHT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHC---CCCeEEEEC-hHHHcCCCCCccE-EEEecCccccCcccccCCCCHHHHHHhhc
Confidence 346779999999999999999999 455777655 8899999998654 444332 356788999999
Q ss_pred hhhhcCCcccEEEEEEEeCC
Q 002901 808 RVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 808 RvhRiGQ~k~V~V~rli~~~ 827 (869)
|++|.|....-.++-++...
T Consensus 1289 RAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1289 HANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TBCCTTTCSCEEEEEEEEGG
T ss_pred cccCCCCCCceEEEEEecch
Confidence 99999998776776666543
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.59 E-value=2e-15 Score=172.55 Aligned_cols=94 Identities=20% Similarity=0.123 Sum_probs=82.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLL 793 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~ 793 (869)
+.++|||++.....+.+...|...|+.+..++|.+ +.++++.|+++ .+.|| ++|.+++.|+|+.. +.||.+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g---~~~vL-VaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT---DWDFV-VTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS---CCSEE-EECGGGGSSCCCCC-SEEEEC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC---CceEE-EECCHHHhCcCCCC-CEEEEC
Confidence 45899999999999999999999999999999975 46799999984 33554 56699999999999 999988
Q ss_pred c--------------------CCCCcchHHHHhhhhhhcCCcc
Q 002901 794 E--------------------PWWNPAVEEQAMDRVHRIGQKE 816 (869)
Q Consensus 794 d--------------------p~wnp~~e~QaigRvhRiGQ~k 816 (869)
| ++.+++...|++||++|.|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8999999999999999999743
No 59
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.38 E-value=8.4e-17 Score=158.65 Aligned_cols=118 Identities=25% Similarity=0.322 Sum_probs=105.5
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
+.|+..|.+++.. .++.|+|||+++...++.+...|...|+.+..++|+|+..+|.+++++|+++ .+.| |++
T Consensus 15 ~~k~~~l~~ll~~----~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g---~~~v-Lva 86 (170)
T 2yjt_D 15 EHKTALLVHLLKQ----PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG---RVNV-LVA 86 (170)
Confidence 6788888888875 3467999999999999999999999999999999999999999999999984 3354 556
Q ss_pred cCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEE
Q 002901 775 LKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKI 820 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V 820 (869)
+.++++|+|++.+++||++|++||+....|++||++|.||+..+.+
T Consensus 87 T~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 87 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 6999999999999999999999999999999999999999766533
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.58 E-value=3.4e-14 Score=183.95 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEE----EEcCC------CCcchHHHHhhh
Q 002901 739 FKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVF----LLEPW------WNPAVEEQAMDR 808 (869)
Q Consensus 739 i~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi----~~dp~------wnp~~e~QaigR 808 (869)
..+...+|+|+.++|..+.+.|+++ .++||+ +|.+.+.|+||++-..|| .+||. -++....|++||
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G---~i~vlv-aTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GR 454 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADK---HIQVLV-STATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR 454 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTT---CCCEEE-ECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTT
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCC---CCeEEE-EcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhh
Confidence 4467789999999999999999994 457666 559999999998777666 36654 467889999999
Q ss_pred hhhcCCcccEEEEEEEeCCC
Q 002901 809 VHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 809 vhRiGQ~k~V~V~rli~~~s 828 (869)
++|.|....-.++-+...+.
T Consensus 455 AGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 455 AGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp BSCTTTCSCEEEEEEEESTT
T ss_pred ccCCCCCCccEEEEEecchh
Confidence 99999876666666666554
No 61
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.58 E-value=8.4e-15 Score=166.64 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=78.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEE-
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFL- 792 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~- 792 (869)
+.++|||++.....+.+...|...|+++..++| ++|.+++++|+++ .+.|| ++|.+.++|+|+. +++||.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g---~~~vL-VaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK---KPDFI-LATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C---CCSEE-EESSSTTCCTTCC-CSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC---CceEE-EECChhheeeccC-ceEEEeC
Confidence 579999999999999999999999999999999 4688999999984 33555 5669999999999 999985
Q ss_pred ------------------EcCCCCcchHHHHhhhhhhcCCcccEEEEEEE
Q 002901 793 ------------------LEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLI 824 (869)
Q Consensus 793 ------------------~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli 824 (869)
++++.+++...|++||++|.|..+. ..|.|+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g-~~~~l~ 296 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDG-DSYYYS 296 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEEC
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCc-eEEEEe
Confidence 8999999999999999999853332 334444
No 62
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.58 E-value=1.1e-14 Score=148.89 Aligned_cols=125 Identities=17% Similarity=0.223 Sum_probs=109.3
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 693 FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 693 ~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+.|+.+|.+++... ++.++|||++.....+.+...|...|+.+..++|+|++.+|..+++.|+++ ...||
T Consensus 14 ~~~~k~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g---~~~vl- 85 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG---EVRVL- 85 (212)
T ss_dssp CTTSHHHHHHHHHHHH----CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS---SCCEE-
T ss_pred CHHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC---CCeEE-
Confidence 3478999999999853 367999999999999999999999999999999999999999999999984 33665
Q ss_pred EecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 773 ~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+++.++++|+|++.+++||++|++|++....|++||++|.|+.. .++.|+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 46699999999999999999999999999999999999999764 556667654
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.56 E-value=1.8e-14 Score=148.50 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=75.4
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeC--CCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYG--DRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRV 425 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G--~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rV 425 (869)
...+|||||. .+..||.+++.++.....+++..++| ........+.+++|+|+|++.+....... .+..-++..|
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~i 159 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMF 159 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT--SSCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC--CcchhhCcEE
Confidence 3568999998 67799999999998666788888888 33334455667999999999997765432 2233457889
Q ss_pred EEcCccccCCcC--hHHHHHHhhcc-cCeEEEEecccc
Q 002901 426 ILDEAHVIKNAN--AQQSRTVTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 426 IlDEaH~ikn~~--s~~~ka~~~L~-a~~r~~LTGTPi 460 (869)
|+||||++.+.+ ....+.+..+. ..+.+++|||+-
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 999999985433 22333334443 456899999983
No 64
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.56 E-value=7e-15 Score=168.33 Aligned_cols=104 Identities=23% Similarity=0.089 Sum_probs=85.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEE-
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFL- 792 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~- 792 (869)
+.++|||++.....+.+...|...|+.+..++|. +|.+++++|+++ ...|| +++.+++.|+|+.. +.||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g---~~~iL-VaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG---DWDFV-ITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC---CCSEE-EESSCC---CCCSC-SEEEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC---CceEE-EECChHHhCeecCC-CEEEEC
Confidence 5699999999999999999999999999999994 688899999984 33554 56699999999998 99988
Q ss_pred -------------------EcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002901 793 -------------------LEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRN 827 (869)
Q Consensus 793 -------------------~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~ 827 (869)
+|+|.+++...|++||++|.|.. +-..|.|+...
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 78999999999999999999963 23455666664
No 65
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=9.1e-15 Score=150.34 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=110.8
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCCCCC
Q 002901 200 ELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAP 279 (869)
Q Consensus 200 ~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~~~~ 279 (869)
.++|||++++..+++. +..|+..++|.|||++++..+.......
T Consensus 36 ~~~~~Q~~~i~~~~~~---------------------------------~~~li~~~TGsGKT~~~~~~~~~~~~~~--- 79 (220)
T 1t6n_A 36 HPSEVQHECIPQAILG---------------------------------MDVLCQAKSGMGKTAVFVLATLQQLEPV--- 79 (220)
T ss_dssp CCCHHHHHHHHHHHTT---------------------------------CCEEEECCTTSCHHHHHHHHHHHHCCCC---
T ss_pred CCCHHHHHHHHHHhCC---------------------------------CCEEEECCCCCchhhhhhHHHHHhhhcc---
Confidence 4899999999998863 4589999999999999887776554211
Q ss_pred CCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEecCh-
Q 002901 280 GLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPP- 358 (869)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~- 358 (869)
.....+|||||.
T Consensus 80 -------------------------------------------------------------------~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 80 -------------------------------------------------------------------TGQVSVLVMCHTR 92 (220)
T ss_dssp -------------------------------------------------------------------TTCCCEEEECSCH
T ss_pred -------------------------------------------------------------------CCCEEEEEEeCCH
Confidence 023468999998
Q ss_pred hHHHHHHHHHHHhcCCC-CeEEEEEeCCCC--CChhhhc--cccEEEEechhhHhhhcccCCCcceeeeeEEEEcCcccc
Q 002901 359 SVFSTWITQLEEHTVPG-MLKTYMYYGDRT--QDVEELK--MYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVI 433 (869)
Q Consensus 359 sll~qW~~Ei~~~~~~~-~l~v~~y~G~r~--~~~~~l~--~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~i 433 (869)
.+..||.++++++.... .+++..++|+.. .....+. .++|+|+|++.+...... ..+..-.+..||+||||++
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHH
Confidence 77899999999997543 688999998432 2222332 469999999999876543 2223345788999999998
Q ss_pred CCc-C--hHHHHHHhhcc-cCeEEEEeccccc
Q 002901 434 KNA-N--AQQSRTVTNLN-AKRRWVVTGTPIQ 461 (869)
Q Consensus 434 kn~-~--s~~~ka~~~L~-a~~r~~LTGTPi~ 461 (869)
.+. . ......+..+. ..+.+++||||-.
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCH
Confidence 542 1 11222223333 4678999999943
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.55 E-value=2.4e-14 Score=148.31 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=78.1
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCC-CeEEEEEeCCCC--CChhhhccccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPG-MLKTYMYYGDRT--QDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~-~l~v~~y~G~r~--~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
...+|||||. .+..||.+++.++.... .+++..++|+.. .....+..++|+|+|++.+...... ..+..-++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~ 169 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRL 169 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCE
Confidence 3468999998 78899999999987543 788889998432 2334557899999999999876532 2223346778
Q ss_pred EEEcCccccCCcC---hHHHHHHhhcc-cCeEEEEeccc
Q 002901 425 VILDEAHVIKNAN---AQQSRTVTNLN-AKRRWVVTGTP 459 (869)
Q Consensus 425 VIlDEaH~ikn~~---s~~~ka~~~L~-a~~r~~LTGTP 459 (869)
||+||||++-+.+ ......+..+. ..+.+++|||+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 9999999985543 22333444454 45689999996
No 67
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=151.85 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=104.1
Q ss_pred cccChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCCC
Q 002901 198 KSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGV 277 (869)
Q Consensus 198 ~~~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~~ 277 (869)
..+|+|||++++.+++.. +.+|+..++|.|||++++.++.......
T Consensus 31 ~~~l~~~Q~~~i~~~~~~---------------------------------~~~li~~~tGsGKT~~~~~~~~~~~~~~- 76 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG---------------------------------KNIIICLPTGSGKTRVAVYIAKDHLDKK- 76 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT---------------------------------CCEEEECSCHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCchHHHHHHHHHHhcC---------------------------------CCEEEEcCCCCCHHHHHHHHHHHHHhhc-
Confidence 357999999999998752 4699999999999999988877543110
Q ss_pred CCCCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEecC
Q 002901 278 APGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCP 357 (869)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P 357 (869)
.. ....+++|||||
T Consensus 77 ---------------------------~~---------------------------------------~~~~~~~lil~p 90 (216)
T 3b6e_A 77 ---------------------------KK---------------------------------------ASEPGKVIVLVN 90 (216)
T ss_dssp ---------------------------HH---------------------------------------TTCCCCEEEEES
T ss_pred ---------------------------cc---------------------------------------ccCCCcEEEEEC
Confidence 00 002456999999
Q ss_pred h-hHHHH-HHHHHHHhcCCCCeEEEEEeCCCC--CCh-hhhccccEEEEechhhHhhhcccC----CCcceeeeeEEEEc
Q 002901 358 P-SVFST-WITQLEEHTVPGMLKTYMYYGDRT--QDV-EELKMYDLVLTTYSTLAIEESWLE----SPVKKIEWWRVILD 428 (869)
Q Consensus 358 ~-sll~q-W~~Ei~~~~~~~~l~v~~y~G~r~--~~~-~~l~~~dVVItTY~~l~~~~~~~~----~~l~~~~w~rVIlD 428 (869)
. .++.| |.+++.++... .+++..++|+.. ... .....++|+|+||+.+........ ..+....|.+||+|
T Consensus 91 ~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiD 169 (216)
T 3b6e_A 91 KVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 169 (216)
T ss_dssp SHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEET
T ss_pred HHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEE
Confidence 8 56688 99999998843 678888888322 222 334579999999999987664321 11334567899999
Q ss_pred CccccCCcChHHHHHHhhc------------------ccCeEEEEecc
Q 002901 429 EAHVIKNANAQQSRTVTNL------------------NAKRRWVVTGT 458 (869)
Q Consensus 429 EaH~ikn~~s~~~ka~~~L------------------~a~~r~~LTGT 458 (869)
|||++........ .+..+ ...+.++||||
T Consensus 170 Eah~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 170 ECHHTNKEAVYNN-IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp TC-------CHHH-HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CchhhccCCcHHH-HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 9999965432221 11111 34688999998
No 68
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.55 E-value=4.1e-13 Score=158.51 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=97.7
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEE
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~ 773 (869)
...|..+|++.|.+.... +.++|||+......+.|...|...|+++..++|++...+|..+...|+. + .| ++
T Consensus 414 ~~~K~~al~~~i~~~~~~--~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~---g--~V-lI 485 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMT--GQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK---G--AV-TI 485 (844)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST---T--CE-EE
T ss_pred HHHHHHHHHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC---C--eE-EE
Confidence 367999999998865322 6789999999999999999999999999999999877777655555554 2 45 55
Q ss_pred ecCCcccccccc--------ccCEEEEEcCCCCcchHHHHhhhhhhcCCcc
Q 002901 774 SLKASGAGVNLT--------AASRVFLLEPWWNPAVEEQAMDRVHRIGQKE 816 (869)
Q Consensus 774 S~~agg~GLNLt--------~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k 816 (869)
+|..+|.|+++. ...+||.+|.+-++..+.|++||++|.|..=
T Consensus 486 ATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 486 ATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp EETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred eCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 669999999998 6789999999999999999999999999753
No 69
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.54 E-value=1.2e-14 Score=175.77 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=94.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHH-----------cCCcEEEEeCCCCHHHHHHHHHHhCCC--CCCCCEEEEEecCCc
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQA-----------AGFKLLRLDGSMNAKKRAQVIEEFGNP--GPGGPTVLLASLKAS 778 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~-----------~gi~~~rldG~~~~~~R~~~i~~F~~~--~~~~~~VlL~S~~ag 778 (869)
.++.++|||+......+.+...|.. .++.+..++|+++.++|.++++.|... ..+..+ +|++|.++
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~ia 379 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIA 379 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHH
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHH
Confidence 3467999999999999999998875 588899999999999999999999810 013434 45567999
Q ss_pred cccccccccCEEEEEcC------------------CCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCH
Q 002901 779 GAGVNLTAASRVFLLEP------------------WWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSI 829 (869)
Q Consensus 779 g~GLNLt~A~~Vi~~dp------------------~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~si 829 (869)
+.|||+...+.||.++. |.+.+...|++||++|. ++-.+|+|+.++..
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999999655 88999999999999998 45678888876554
No 70
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=150.50 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=79.4
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCC--CChhhhccccEEEEechhhHhhhcccCCCcceeeeeEE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRT--QDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRV 425 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~--~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rV 425 (869)
...+|||||. .+..||.+++.++.....+++..++|+.. .....+..++|+|+|++.+....... ..+....+.+|
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~l 175 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQML 175 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEE
Confidence 3568999998 77899999999998665788888888332 23445678999999999997655321 12233467889
Q ss_pred EEcCccccCCcC--hHHHHHHhhcc-cCeEEEEecccc
Q 002901 426 ILDEAHVIKNAN--AQQSRTVTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 426 IlDEaH~ikn~~--s~~~ka~~~L~-a~~r~~LTGTPi 460 (869)
|+||||++.+.+ ......+..+. ..+++++|||+-
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 999999986543 33344445554 456899999983
No 71
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.54 E-value=1.9e-14 Score=170.91 Aligned_cols=91 Identities=26% Similarity=0.209 Sum_probs=81.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEE-
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFL- 792 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~- 792 (869)
+.++|||++.....+.+...|...|+++..++| ++|.++++.|+++ .+.|| +++.++++|+|+. +++||+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g---~~~VL-VaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNG---DWDFV-ITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTC---CCSEE-EECGGGGTTCCCC-CSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCC---CceEE-EECchhhcceeeC-CcEEEEC
Confidence 679999999999999999999999999999999 3799999999984 33555 5669999999999 999997
Q ss_pred -------------------EcCCCCcchHHHHhhhhhhcC
Q 002901 793 -------------------LEPWWNPAVEEQAMDRVHRIG 813 (869)
Q Consensus 793 -------------------~dp~wnp~~e~QaigRvhRiG 813 (869)
+|++.+++...|++||++|.|
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~ 520 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP 520 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC
Confidence 568888899999999999994
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.53 E-value=3.5e-14 Score=144.31 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=74.8
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCCC--Chh-hhccccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVE-ELKMYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~--~~~-~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
...+|||||. ++..||.+++.++. +.+++..++|.... ... ....++|+|+|++.+....... .+..-.+..
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVA--PHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG--VLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC--TTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT--SSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHh--hcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC--CcchhhceE
Confidence 3569999998 78899999999998 44778888883322 111 2256899999999987765431 222345778
Q ss_pred EEEcCccccCCcC--hHHHHHHhhcc-cCeEEEEecccc
Q 002901 425 VILDEAHVIKNAN--AQQSRTVTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 425 VIlDEaH~ikn~~--s~~~ka~~~L~-a~~r~~LTGTPi 460 (869)
||+||||++.+.+ ......+..+. ..+.+++||||-
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC
T ss_pred EEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC
Confidence 9999999985432 22333334443 456899999983
No 73
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.52 E-value=3.5e-14 Score=167.47 Aligned_cols=102 Identities=20% Similarity=0.109 Sum_probs=86.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEE---
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRV--- 790 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~V--- 790 (869)
+.++|||++.....+.+...|...|+++..++|. +|.+++++|+++ ...| |+++.+++.|+|+. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g---~~~V-LVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT---DWDF-VVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS---CCSE-EEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC---CcEE-EEECcHHHcCcccC-ceEEEEC
Confidence 5699999999999999999999999999999994 788899999884 3355 45669999999996 8888
Q ss_pred -----------------EEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEe
Q 002901 791 -----------------FLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIV 825 (869)
Q Consensus 791 -----------------i~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~ 825 (869)
|++|++-+++...|++||++|.|..+. ..|.|+.
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 777888888999999999999986443 3566665
No 74
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.51 E-value=2.7e-13 Score=158.65 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEE--
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVF-- 791 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi-- 791 (869)
+.++|||++.....+.+...|+..|++...++|++++++ |.+. ..+ +|+++.+++.|||+. .+.||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~---~~~-VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI---GDV-VVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS---SCE-EEEECTTHHHHCCCC-BSEEEEC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC---CCc-EEEECChHHccCCCC-CcEEEec
Confidence 679999999999999999999999999999999999764 4442 224 555679999999985 99888
Q ss_pred --------EEc-----------CCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 792 --------LLE-----------PWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 792 --------~~d-----------p~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
.|| .|-++....|++||++| |..- . |.|+..+.
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e 515 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGE 515 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecch
Confidence 566 67888999999999999 6543 2 77877654
No 75
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.50 E-value=3e-12 Score=151.00 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=100.4
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEE
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~ 773 (869)
...|..+|++.+.+... .+..+|||+......+.|...|...||++..++|++...+|.-+...|+. + .| ++
T Consensus 442 ~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~---G--~V-tI 513 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR---G--GV-TV 513 (922)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST---T--CE-EE
T ss_pred HHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC---C--eE-EE
Confidence 36799999999987543 36789999999999999999999999999999999876666666667766 2 45 55
Q ss_pred ecCCcccccccccc----------------------------------------------------CEEEEEcCCCCcch
Q 002901 774 SLKASGAGVNLTAA----------------------------------------------------SRVFLLEPWWNPAV 801 (869)
Q Consensus 774 S~~agg~GLNLt~A----------------------------------------------------~~Vi~~dp~wnp~~ 801 (869)
+|..+|.|+++... .+||.+|.+-++..
T Consensus 514 ATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~ri 593 (922)
T 1nkt_A 514 ATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRI 593 (922)
T ss_dssp EETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHH
T ss_pred ecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHH
Confidence 66999999998753 59999999999999
Q ss_pred HHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 802 EEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 802 e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
+.|++||.+|.|..= ....|++.
T Consensus 594 y~qr~GRTGRqGdpG--~s~fflSl 616 (922)
T 1nkt_A 594 DNQLRGRSGRQGDPG--ESRFYLSL 616 (922)
T ss_dssp HHHHHHTSSGGGCCE--EEEEEEET
T ss_pred HHHHhcccccCCCCe--eEEEEech
Confidence 999999999998753 33334543
No 76
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.50 E-value=2.4e-13 Score=160.94 Aligned_cols=108 Identities=14% Similarity=0.249 Sum_probs=92.5
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEEcC
Q 002901 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEP 795 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~dp 795 (869)
..+||+.....++.+...|...|+.+..++|+|++++|.++++.|++++ +..+||+ ++.+++.|||+ .+++||++++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~-g~~~VLV-ATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPN-DPCKILV-ATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTT-SSCCEEE-ECGGGGSSCCC-CBSEEEESCS
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccC-CCeEEEE-eCcHHHCCcCc-CccEEEECCc
Confidence 3477787788999999999999999999999999999999999999832 2345655 56999999999 9999999999
Q ss_pred --------------CCCcchHHHHhhhhhhcCCc-ccEEEEEEEeC
Q 002901 796 --------------WWNPAVEEQAMDRVHRIGQK-EDVKIVRLIVR 826 (869)
Q Consensus 796 --------------~wnp~~e~QaigRvhRiGQ~-k~V~V~rli~~ 826 (869)
+++++...|++||++|.|+. .+-.+|.+..+
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp BC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45677776544
No 77
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.49 E-value=7.5e-13 Score=155.85 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=98.8
Q ss_pred CcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEE
Q 002901 694 TSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLA 773 (869)
Q Consensus 694 ~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~ 773 (869)
...|..+|++.+.+.. ..+..+|||+......+.|...|...||++..++|++...+|.-+..+|+.+ . +++
T Consensus 423 ~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G-----~-VtI 494 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA-----A-VTI 494 (853)
T ss_dssp HHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT-----C-EEE
T ss_pred HHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----e-EEE
Confidence 4679999999997653 3377899999999999999999999999999999998777777777788762 3 455
Q ss_pred ecCCcccccccccc-------------------------------------CEEEEEcCCCCcchHHHHhhhhhhcCCcc
Q 002901 774 SLKASGAGVNLTAA-------------------------------------SRVFLLEPWWNPAVEEQAMDRVHRIGQKE 816 (869)
Q Consensus 774 S~~agg~GLNLt~A-------------------------------------~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k 816 (869)
+|..+|.|+++... .+||.+|.+-++..+.|++||++|.|..=
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G 574 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAG 574 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCe
Confidence 66999999999753 69999999999999999999999999753
No 78
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.49 E-value=1.2e-13 Score=140.38 Aligned_cols=156 Identities=12% Similarity=0.003 Sum_probs=109.4
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhccCCCCCC
Q 002901 200 ELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAP 279 (869)
Q Consensus 200 ~L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~~~~~~~ 279 (869)
.|+|||.+++..++.. +..|+..++|.|||+.++..+.......
T Consensus 25 ~~~~~Q~~~i~~~~~~---------------------------------~~~lv~apTGsGKT~~~~~~~~~~~~~~--- 68 (206)
T 1vec_A 25 KPSPIQEESIPIALSG---------------------------------RDILARAKNGTGKSGAYLIPLLERLDLK--- 68 (206)
T ss_dssp SCCHHHHHHHHHHHTT---------------------------------CCEEEECCSSSTTHHHHHHHHHHHCCTT---
T ss_pred CCCHHHHHHHHHHccC---------------------------------CCEEEECCCCCchHHHHHHHHHHHhccc---
Confidence 6899999999998752 4689999999999998776665433111
Q ss_pred CCCCCCCCCCchhhhhhhhhccccccccCccccCCcccccccccccccccccccCcccccccCCccccccceEEEecCh-
Q 002901 280 GLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPP- 358 (869)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~- 358 (869)
.....+|||||.
T Consensus 69 -------------------------------------------------------------------~~~~~~lil~Pt~ 81 (206)
T 1vec_A 69 -------------------------------------------------------------------KDNIQAMVIVPTR 81 (206)
T ss_dssp -------------------------------------------------------------------SCSCCEEEECSCH
T ss_pred -------------------------------------------------------------------CCCeeEEEEeCcH
Confidence 023468999998
Q ss_pred hHHHHHHHHHHHhcCCC-CeEEEEEeCCCCCC--hhh-hccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccC
Q 002901 359 SVFSTWITQLEEHTVPG-MLKTYMYYGDRTQD--VEE-LKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIK 434 (869)
Q Consensus 359 sll~qW~~Ei~~~~~~~-~l~v~~y~G~r~~~--~~~-l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ik 434 (869)
.+..||.+++.++.... .+++..++|+.... ... ...++|+|+|++.+...... ..+..-++..||+||||.+.
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhH
Confidence 67799999999987543 67888888843221 111 24689999999999776643 22223356789999999986
Q ss_pred CcCh--HHHHHHhhcc-cCeEEEEecccc
Q 002901 435 NANA--QQSRTVTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 435 n~~s--~~~ka~~~L~-a~~r~~LTGTPi 460 (869)
..+. .....+..+. ..+.+++|||+-
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 5432 2223333343 567899999983
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.49 E-value=9.2e-14 Score=142.73 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=74.0
Q ss_pred ceEEEecCh-hHHHHHHHHHHHhcCCC----CeEEEEEeCCCCC--Chhhh-ccccEEEEechhhHhhhcccCCCcceee
Q 002901 350 KITLIVCPP-SVFSTWITQLEEHTVPG----MLKTYMYYGDRTQ--DVEEL-KMYDLVLTTYSTLAIEESWLESPVKKIE 421 (869)
Q Consensus 350 ~~tLIV~P~-sll~qW~~Ei~~~~~~~----~l~v~~y~G~r~~--~~~~l-~~~dVVItTY~~l~~~~~~~~~~l~~~~ 421 (869)
..+|||||. .+..||.+++.++.... .+++..++|+... ....+ ..++|+|+|++.+...... ..+....
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~ 150 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHT 150 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCc
Confidence 468999998 67799999999987533 5777788873221 11112 3689999999999876543 2223345
Q ss_pred eeEEEEcCccccCCcC--hHHHHHHhhcc-cCeEEEEeccc
Q 002901 422 WWRVILDEAHVIKNAN--AQQSRTVTNLN-AKRRWVVTGTP 459 (869)
Q Consensus 422 w~rVIlDEaH~ikn~~--s~~~ka~~~L~-a~~r~~LTGTP 459 (869)
+..||+||||.+.+.+ ......+..+. ..+++++|||+
T Consensus 151 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 151 AHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred ceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC
Confidence 6779999999986433 23334444453 45689999997
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.48 E-value=2.2e-13 Score=145.95 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=107.3
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 693 FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 693 ~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+.|+++|.+++... ++.++|||++.....+.+...|...|+.+..++|+|++.+|..+++.|+++ ..+||+
T Consensus 11 ~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g---~~~vLV 83 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG---EVRVLV 83 (300)
T ss_dssp CSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT---SCCEEE
T ss_pred CHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC---CceEEE
Confidence 3478999999999864 278999999999999999999999999999999999999999999999984 335555
Q ss_pred EecCCccccccccccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 773 ASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 773 ~S~~agg~GLNLt~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
+|.+++.|+|++.+++||++|++|++....|++||++|.|+. -.++.|+....
T Consensus 84 -aT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 84 -ATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp -ECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred -EechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 569999999999999999999999999999999999999976 46667776654
No 81
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.46 E-value=2.7e-13 Score=141.10 Aligned_cols=109 Identities=13% Similarity=0.029 Sum_probs=72.2
Q ss_pred ceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCC--CCCChhhhc--cccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 350 KITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGD--RTQDVEELK--MYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 350 ~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~--r~~~~~~l~--~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
..+|||||. .+..||.+++.++.....+.+..++|. .......+. .++|+|+|++.+...... ..+..-.+.+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~ 176 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKM 176 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcE
Confidence 468999998 678999999999986556777777772 222223332 379999999998776532 1222234678
Q ss_pred EEEcCccccCCc--ChHHHHHHhhcc-cCeEEEEecccc
Q 002901 425 VILDEAHVIKNA--NAQQSRTVTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 425 VIlDEaH~ikn~--~s~~~ka~~~L~-a~~r~~LTGTPi 460 (869)
||+||||.+-+. .......+..+. ..+.+++|||+-
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 999999987432 334444555554 456789999984
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.44 E-value=1.6e-13 Score=144.37 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=75.5
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCCC--Chhhh-ccccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVEEL-KMYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~--~~~~l-~~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
...+|||||. .|..||.+++.++.....+++..++|.... ....+ ..+||+|+|++.+....... .+..-.+..
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~ 177 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKY 177 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCE
Confidence 3569999998 678999999999986667888888883322 22222 46799999999998765432 222234577
Q ss_pred EEEcCccccCCcC--hHHHHHHhhc--c---cCeEEEEecccc
Q 002901 425 VILDEAHVIKNAN--AQQSRTVTNL--N---AKRRWVVTGTPI 460 (869)
Q Consensus 425 VIlDEaH~ikn~~--s~~~ka~~~L--~---a~~r~~LTGTPi 460 (869)
||+||||++.+.+ ......+..+ . ..+.+++||||-
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 9999999975432 2333333322 2 346899999983
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=142.63 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=75.6
Q ss_pred ceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--h-hhhccccEEEEechhhHhhhcccCCCcceeeeeEE
Q 002901 350 KITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQD--V-EELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRV 425 (869)
Q Consensus 350 ~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~~--~-~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rV 425 (869)
..+|||||. .+..||.++++++.....+++..++|+.... . .....++|+|+|++.+....... ..+..-.+..|
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~l 190 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYL 190 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEE
Confidence 458999998 6779999999998754467888888843221 1 12357899999999997765321 11223356789
Q ss_pred EEcCccccCCcC--hHHHHHHhhcc-cCeEEEEecccc
Q 002901 426 ILDEAHVIKNAN--AQQSRTVTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 426 IlDEaH~ikn~~--s~~~ka~~~L~-a~~r~~LTGTPi 460 (869)
|+||||++.+.. ....+.+..+. ..+++++|||+-
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 999999886542 22334444443 567899999984
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.41 E-value=7.9e-13 Score=138.19 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=73.8
Q ss_pred ceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCC----CCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 350 KITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGD----RTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 350 ~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~----r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
..+|||||. .+..||.+++.++.....+++..++|. ..........++|+|+|++.+..........+..-++..
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 458999998 677999999999986667777777761 111222345789999999999876643221233334678
Q ss_pred EEEcCccccCCcC-----hHHHHHHhhc--ccCeEEEEeccc
Q 002901 425 VILDEAHVIKNAN-----AQQSRTVTNL--NAKRRWVVTGTP 459 (869)
Q Consensus 425 VIlDEaH~ikn~~-----s~~~ka~~~L--~a~~r~~LTGTP 459 (869)
||+||||.+-... ......+..+ ...+.+++|||+
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 9999999985421 1222222232 245789999998
No 85
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.38 E-value=2.5e-10 Score=135.93 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..++..|++.|...... +.++|||+......+.|...|...|+++..++|+++..+|.++++.|+.+ .+.| |++
T Consensus 422 ~~~~~~Ll~~l~~~~~~--~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g---~~~V-Lva 495 (664)
T 1c4o_A 422 ENQILDLMEGIRERAAR--GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG---HYDC-LVG 495 (664)
T ss_dssp TTHHHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT---SCSE-EEE
T ss_pred cchHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC---CceE-EEc
Confidence 45777888877765433 68999999999999999999999999999999999999999999999884 3355 556
Q ss_pred cCCccccccccccCEEEEEcC-----CCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 775 LKASGAGVNLTAASRVFLLEP-----WWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp-----~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
+.+++.|+|+..++.||++|. ++++....|++||++|.|. -.++.|+...+
T Consensus 496 T~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 496 INLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp SCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred cChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 699999999999999999998 8999999999999999863 34566666554
No 86
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.34 E-value=3.7e-12 Score=131.55 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=72.1
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeC--CCCCChhh-hccccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYG--DRTQDVEE-LKMYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G--~r~~~~~~-l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
...+|||||. .+..||.+++.++. ...+++..++| ........ ...++|+|+|++.+....... .+..-++..
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~ 170 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN--SVNLRSITY 170 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT--CCCCTTCCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcCcccceE
Confidence 4568999998 57799999999987 34667777777 33223333 356899999999998765332 222334678
Q ss_pred EEEcCccccCCcC--hHHHHHHhhcc-cCeEEEEeccc
Q 002901 425 VILDEAHVIKNAN--AQQSRTVTNLN-AKRRWVVTGTP 459 (869)
Q Consensus 425 VIlDEaH~ikn~~--s~~~ka~~~L~-a~~r~~LTGTP 459 (869)
||+||||.+-+.+ ....+.+..+. ..+.+++|||.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 9999999976532 22333344443 45678999996
No 87
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.31 E-value=3.2e-10 Score=130.99 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=100.3
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 693 FTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 693 ~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
....|..++++.+.+.... +.++|||+......+.|...|...|++...++|+....+|.-+...|+. + .| +
T Consensus 455 t~~eK~~al~~~I~~~~~~--gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~---g--~V-t 526 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKK--GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK---G--MV-T 526 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST---T--CE-E
T ss_pred cHHHHHHHHHHHHHHHhhC--CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC---C--eE-E
Confidence 3467999999999876433 6789999999999999999999999999999998655555545556655 2 44 5
Q ss_pred EecCCcccccccc--------ccCEEEEEcCCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002901 773 ASLKASGAGVNLT--------AASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVR 826 (869)
Q Consensus 773 ~S~~agg~GLNLt--------~A~~Vi~~dp~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~ 826 (869)
++|..+|.|++.. ...+||.+|++-++..+.|++||++|.|+.=. .+.|+..
T Consensus 527 VATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~--a~~fvsl 586 (822)
T 3jux_A 527 IATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE--SIFFLSL 586 (822)
T ss_dssp EEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE--EEEEEET
T ss_pred EEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee--EEEEech
Confidence 5669999999997 66799999999999999999999999997543 3334443
No 88
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.27 E-value=8.8e-12 Score=131.65 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=74.7
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--hhhh-ccccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQD--VEEL-KMYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~~--~~~l-~~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
...+|||+|. .|..||.+++.++.......+..++|..... ...+ ...+|+|+|++.+....... ..+.--++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-PGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-TTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-CCcccccCCE
Confidence 3558999998 6779999999999866677788888833221 1222 45899999999987654321 1112234577
Q ss_pred EEEcCccccCCcC--hHHHHHHhhcc-cCeEEEEecccc
Q 002901 425 VILDEAHVIKNAN--AQQSRTVTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 425 VIlDEaH~ikn~~--s~~~ka~~~L~-a~~r~~LTGTPi 460 (869)
||+||||.+-..+ ......+..+. ..+.+++||||-
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 9999999975532 22233344443 456799999984
No 89
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.26 E-value=9.9e-12 Score=129.62 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=73.9
Q ss_pred cceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCCC--Chhhh-ccccEEEEechhhHhhhcccCCCcceeeeeE
Q 002901 349 KKITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQ--DVEEL-KMYDLVLTTYSTLAIEESWLESPVKKIEWWR 424 (869)
Q Consensus 349 ~~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~--~~~~l-~~~dVVItTY~~l~~~~~~~~~~l~~~~w~r 424 (869)
...+|||||. .+..||.+++.++.....+++..++|.... ....+ ..++|+|+|++.+..........+ -++..
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~--~~~~~ 179 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNL--RRTTY 179 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCC--TTCCE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCc--ccccE
Confidence 3458999998 677999999999875557888888884322 12222 458999999999977654322222 34567
Q ss_pred EEEcCccccCCcC--hHHHHHHhhc-ccCeEEEEeccc
Q 002901 425 VILDEAHVIKNAN--AQQSRTVTNL-NAKRRWVVTGTP 459 (869)
Q Consensus 425 VIlDEaH~ikn~~--s~~~ka~~~L-~a~~r~~LTGTP 459 (869)
||+||||.+-+.+ ......+..+ ...+.+++|||+
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 9999999975532 2223333444 345678999996
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.13 E-value=4.2e-10 Score=121.06 Aligned_cols=109 Identities=17% Similarity=0.008 Sum_probs=71.5
Q ss_pred eEEEecCh-hHHHHHHHHHHHhcCC-CCeEEEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEc
Q 002901 351 ITLIVCPP-SVFSTWITQLEEHTVP-GMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILD 428 (869)
Q Consensus 351 ~tLIV~P~-sll~qW~~Ei~~~~~~-~~l~v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlD 428 (869)
.+|||||. .|..|+.+.+.++... +.+.+..+.|............+|+|+|.+.+....... ..+..-+..+||||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLD 242 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEET
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEe
Confidence 58999998 5679999999888743 367788887733333333467899999999997665321 11222345679999
Q ss_pred CccccCCc-C-hHHHHH-Hhhcc-cCeEEEEecccc
Q 002901 429 EAHVIKNA-N-AQQSRT-VTNLN-AKRRWVVTGTPI 460 (869)
Q Consensus 429 EaH~ikn~-~-s~~~ka-~~~L~-a~~r~~LTGTPi 460 (869)
|||.+-+. . ...... +..+. ..+.+++|||+-
T Consensus 243 Ead~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp THHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred CHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 99997542 1 122222 23332 356789999983
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.96 E-value=3.2e-08 Score=115.31 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE-EecCC
Q 002901 699 SALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL-ASLKA 777 (869)
Q Consensus 699 ~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL-~S~~a 777 (869)
..+.+.|.++... .+.++|||......++.+...|.. ++ +...|.. .+|.+++++|+.+ + .||+ +.+..
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~--~--~il~~V~~~~ 439 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG--K--YLVMLVMRAK 439 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS--C--CEEEEEC---
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC--C--eEEEEEecCc
Confidence 5566666655443 356899999999999988887764 33 3456654 4789999999883 2 3444 35689
Q ss_pred ccccccccc----cCEEEEEcCCCCcc------------------------------hHHHHhhhhhhcCCcccEE
Q 002901 778 SGAGVNLTA----ASRVFLLEPWWNPA------------------------------VEEQAMDRVHRIGQKEDVK 819 (869)
Q Consensus 778 gg~GLNLt~----A~~Vi~~dp~wnp~------------------------------~e~QaigRvhRiGQ~k~V~ 819 (869)
.++|+|+.. ++.||+...|+-+. ...|++||+.|--+.+-|.
T Consensus 440 ~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v 515 (540)
T 2vl7_A 440 ESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKI 515 (540)
T ss_dssp ------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEE
T ss_pred eecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEE
Confidence 999999986 78899998775433 2348888888876665553
No 92
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.94 E-value=6.8e-09 Score=123.58 Aligned_cols=125 Identities=16% Similarity=0.220 Sum_probs=106.5
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 695 SSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
..++..|++.|.+... .+.++|||+......+.|...|...|+++..++|++++.+|.++++.|+++ .+.| |++
T Consensus 428 ~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g---~~~V-LVa 501 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIE--RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG---KYDV-LVG 501 (661)
T ss_dssp TTHHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT---SCSE-EEE
T ss_pred cchHHHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC---CeEE-EEe
Confidence 4567778777776542 368999999999999999999999999999999999999999999999883 3354 556
Q ss_pred cCCccccccccccCEEEEEcC-----CCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002901 775 LKASGAGVNLTAASRVFLLEP-----WWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNS 828 (869)
Q Consensus 775 ~~agg~GLNLt~A~~Vi~~dp-----~wnp~~e~QaigRvhRiGQ~k~V~V~rli~~~s 828 (869)
+.+.+.|+|+..++.||++|. ++++....|++||++|-+ +-.++.|+...+
T Consensus 502 T~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 502 INLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp SCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred cchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 699999999999999999998 899999999999999962 445666776654
No 93
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.66 E-value=1.1e-06 Score=103.75 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=63.5
Q ss_pred eEEEecChhHH----HHHHHHHHHhcCCCCeEEEEEeCCCCCC-hhhhccccEEEEechhhHhhhcc-----cCCCccee
Q 002901 351 ITLIVCPPSVF----STWITQLEEHTVPGMLKTYMYYGDRTQD-VEELKMYDLVLTTYSTLAIEESW-----LESPVKKI 420 (869)
Q Consensus 351 ~tLIV~P~sll----~qW~~Ei~~~~~~~~l~v~~y~G~r~~~-~~~l~~~dVVItTY~~l~~~~~~-----~~~~l~~~ 420 (869)
.++||+|+.-| .+|...+-+++ .+++.+..|+.... .......||++.|.+.+.-++-. ....+..-
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l---GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r 198 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL---GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLR 198 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT---TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccc
Confidence 47999999765 45666666665 57787777733222 22234689999999988533210 01112222
Q ss_pred ---eeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccCChhhhHh
Q 002901 421 ---EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFS 469 (869)
Q Consensus 421 ---~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N~l~DL~s 469 (869)
....+||||+|.+--. .+..-+++|| |+... .++|.
T Consensus 199 ~d~~l~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY~ 237 (997)
T 2ipc_A 199 HDHPLHYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDLYY 237 (997)
T ss_dssp SSSSSCEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHHH
T ss_pred cCCCcceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHHH
Confidence 4567999999965321 2334499999 88766 44444
No 94
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.41 E-value=5.4e-07 Score=105.27 Aligned_cols=89 Identities=8% Similarity=0.052 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeC-CCCHHHHHHHHHHhCCCCCCCCEEEEEec-
Q 002901 698 VSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDG-SMNAKKRAQVIEEFGNPGPGGPTVLLASL- 775 (869)
Q Consensus 698 ~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG-~~~~~~R~~~i~~F~~~~~~~~~VlL~S~- 775 (869)
...+.+.|.++....++ .+|||...-..++.+.. ..+.++. ..| +++ +.++++.|+.. . + .||+...
T Consensus 378 ~~~l~~~i~~l~~~~~g-~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~-~-~-~vl~~v~g 446 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKA-NVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISAN-N-K-VLIGSVGK 446 (551)
T ss_dssp HHHHHHHHHHHHHHCSS-EEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSS-S-S-CEEEEESS
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhc-C-C-eEEEEEec
Confidence 46677777766555544 67777666666666665 2344433 344 333 56688999742 2 2 4566543
Q ss_pred CCcccccccc-----ccCEEEEEcCCC
Q 002901 776 KASGAGVNLT-----AASRVFLLEPWW 797 (869)
Q Consensus 776 ~agg~GLNLt-----~A~~Vi~~dp~w 797 (869)
....+|+|+. .+..||+.-.|+
T Consensus 447 g~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 447 GKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred ceecccccccccCCcceeEEEEEcCCC
Confidence 7899999999 467788776554
No 95
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.6e-07 Score=74.78 Aligned_cols=52 Identities=25% Similarity=0.677 Sum_probs=46.7
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDL 673 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 673 (869)
+...|++|.+...+++.+.|+|.||..|+..++......||+|+.++...++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4578999999999999999999999999999998777899999999887654
No 96
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.32 E-value=5.7e-07 Score=92.90 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=57.8
Q ss_pred ceEEEecChhH-HHHHHHHHHHhcCCC-CeEEEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEE
Q 002901 350 KITLIVCPPSV-FSTWITQLEEHTVPG-MLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVIL 427 (869)
Q Consensus 350 ~~tLIV~P~sl-l~qW~~Ei~~~~~~~-~l~v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIl 427 (869)
...++++|... ..|..+.+.+..... ...+. ++.+......-...+|+++|.+.+...... .+. +...||+
T Consensus 110 ~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~--~~~~lVl 182 (235)
T 3llm_A 110 CNIVVTQPRRISAVSVAERVAFERGEEPGKSCG--YSVRFESILPRPHASIMFCTVGVLLRKLEA---GIR--GISHVIV 182 (235)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEE--EEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCT--TCCEEEE
T ss_pred eEEEEeccchHHHHHHHHHHHHHhccccCceEE--EeechhhccCCCCCeEEEECHHHHHHHHHh---hhc--CCcEEEE
Confidence 35789999854 467777777665322 11111 111111111114578999999988776532 233 3456999
Q ss_pred cCcccc-CCcChH--HHHHHhh-cccCeEEEEeccccc
Q 002901 428 DEAHVI-KNANAQ--QSRTVTN-LNAKRRWVVTGTPIQ 461 (869)
Q Consensus 428 DEaH~i-kn~~s~--~~ka~~~-L~a~~r~~LTGTPi~ 461 (869)
||||.. -+.... ..+.+.. ....+.+++|||+-.
T Consensus 183 DEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 183 DEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDT 220 (235)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCC
T ss_pred ECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCH
Confidence 999972 111111 1122222 234578999999743
No 97
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.30 E-value=4.7e-07 Score=75.97 Aligned_cols=52 Identities=33% Similarity=0.553 Sum_probs=46.5
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDL 673 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 673 (869)
+...|++|.+.+.+++.++|+|.||..|+..++......||.|+.++...++
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 4678999999999999999999999999999998767899999998876543
No 98
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.21 E-value=1.2e-06 Score=77.42 Aligned_cols=52 Identities=35% Similarity=0.772 Sum_probs=46.6
Q ss_pred CCCCCccCCCCCccee-cccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 623 DFDCPICISPPSDIII-TCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~-t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
...|+||.+.+.+++. +.|+|.||..||..++......||+||.++...++.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 4689999999999999 999999999999999998878999999998765544
No 99
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.20 E-value=1.4e-06 Score=76.69 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=46.0
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
+.+.|++|.+.+.+||+++|+|.||+.||..++.. ...||+|+.++...++.
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLE 79 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSE
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhce
Confidence 46789999999999999999999999999999984 67999999998765543
No 100
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.5e-06 Score=71.64 Aligned_cols=54 Identities=31% Similarity=0.651 Sum_probs=46.9
Q ss_pred CCCCCccCCCCCcceec-ccCCccchhHHHHhhhccCCCCCCCCCCccCCCcccCC
Q 002901 623 DFDCPICISPPSDIIIT-CCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSP 677 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~~ 677 (869)
...|+||.+.+.+++.+ .|+|.||..|+..++.. ...||+|+..+...++...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence 56899999999998875 99999999999999966 57999999999887776544
No 101
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.4e-06 Score=71.96 Aligned_cols=51 Identities=29% Similarity=0.681 Sum_probs=45.0
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhc--cCCCCCCCCCCccCCC
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQH--TKPCCPLCRHPLLQSD 672 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~~~~ 672 (869)
+...|+||.+...+++.++|+|.||..|+..++.. ....||+|+.++...+
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 46789999999999999999999999999999974 4678999999887654
No 102
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.14 E-value=1.2e-06 Score=74.76 Aligned_cols=51 Identities=27% Similarity=0.366 Sum_probs=45.5
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDL 673 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 673 (869)
+.+.|++|.+.+.+||+++|||.||+.||..++.. ...||+|+.++...++
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESML 63 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGC
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhc
Confidence 46789999999999999999999999999999985 6799999998876544
No 103
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.13 E-value=1.3e-06 Score=70.45 Aligned_cols=54 Identities=28% Similarity=0.684 Sum_probs=44.6
Q ss_pred CCCCCCccCC-CCCcc----eecccCCccchhHHHHhhhccCCCCCCCCCCccCCCccc
Q 002901 622 EDFDCPICIS-PPSDI----IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFS 675 (869)
Q Consensus 622 ~~~~c~~c~~-~~~~~----~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 675 (869)
++..|++|.+ ...++ +++.|+|.||..|+.+++......||.|+.++...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 3568999999 55554 578999999999999998777788999999998776543
No 104
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.11 E-value=1.7e-06 Score=75.69 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=46.1
Q ss_pred CCCCCCccCCCCCcceecccC-CccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDIIITCCA-HIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~-h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
+.+.|+||.+.+.+||+++|+ |.||+.||..++.. ...||+|+.++...++.
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSE
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhce
Confidence 467899999999999999999 99999999999986 57899999998765543
No 105
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.10 E-value=2.9e-06 Score=72.29 Aligned_cols=53 Identities=36% Similarity=0.839 Sum_probs=46.4
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhcc-----CCCCCCCCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHT-----KPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~-----~~~cp~c~~~~~~~~~~ 674 (869)
+...|++|.+...+++.++|+|.||..|+..++... ...||.|+..+...++.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 457899999999999999999999999999998874 67899999998865543
No 106
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=70.32 Aligned_cols=52 Identities=33% Similarity=0.855 Sum_probs=44.8
Q ss_pred CCCCCCccCCCCCcc-------eecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDI-------IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~-------~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
+...|+||.+...++ +.+.|+|.||..|+.+++.. ...||+||.++...++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcccee
Confidence 567899999987665 88999999999999999877 56999999999876654
No 107
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.3e-06 Score=71.76 Aligned_cols=53 Identities=25% Similarity=0.498 Sum_probs=45.6
Q ss_pred CCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 621 GEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
.+...|+||++.+.+++.++|+|.||..|+..++... ..||+||..+...++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHhhcc
Confidence 3467899999999999999999999999999988764 6899999998765544
No 108
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.1e-06 Score=73.70 Aligned_cols=56 Identities=29% Similarity=0.680 Sum_probs=47.4
Q ss_pred CCCCCCccCCCCCc----ceecccCCccchhHHHHhhhcc--CCCCCCCCCCccCCCcccCC
Q 002901 622 EDFDCPICISPPSD----IIITCCAHIFCRSCILKTLQHT--KPCCPLCRHPLLQSDLFSSP 677 (869)
Q Consensus 622 ~~~~c~~c~~~~~~----~~~t~c~h~~c~~ci~~~~~~~--~~~cp~c~~~~~~~~~~~~~ 677 (869)
+...|+||.+...+ ++.++|+|.||..|+..++... ...||+||..+...++...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLT 75 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSE
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHH
Confidence 45789999999887 8999999999999999999876 57899999998876554433
No 109
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.08 E-value=2.3e-06 Score=70.92 Aligned_cols=51 Identities=25% Similarity=0.709 Sum_probs=43.7
Q ss_pred CCCCCCccCCCCCcceecc-cCCccchhHHHHhhhcc-CCCCCCCCCCccCCC
Q 002901 622 EDFDCPICISPPSDIIITC-CAHIFCRSCILKTLQHT-KPCCPLCRHPLLQSD 672 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~-c~h~~c~~ci~~~~~~~-~~~cp~c~~~~~~~~ 672 (869)
+...|+||.+.+.+++.++ |+|.||..|+..++... ...||+||.++...+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3568999999999999999 99999999999999865 368999999765433
No 110
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=4.1e-06 Score=71.29 Aligned_cols=53 Identities=26% Similarity=0.786 Sum_probs=46.2
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhcc-----CCCCCCCCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHT-----KPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~-----~~~cp~c~~~~~~~~~~ 674 (869)
+...|++|.+...+++.++|+|.||..|+..++... ...||.|+..+...++.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 467899999999999999999999999999998762 67999999998875543
No 111
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.04 E-value=5.4e-06 Score=69.16 Aligned_cols=54 Identities=28% Similarity=0.714 Sum_probs=44.0
Q ss_pred CCCCCCCccCCCCC--cceecc--cCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 621 GEDFDCPICISPPS--DIIITC--CAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 621 ~~~~~c~~c~~~~~--~~~~t~--c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
.++..|+||++... +..+.+ |+|.||..|+...++.....||.||.++....+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 34678999999774 345554 9999999999999877778999999999876553
No 112
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.04 E-value=1.4e-06 Score=73.21 Aligned_cols=52 Identities=31% Similarity=0.767 Sum_probs=45.6
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhcc------CCCCCCCCCCccCCCc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHT------KPCCPLCRHPLLQSDL 673 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~------~~~cp~c~~~~~~~~~ 673 (869)
+...|++|.+...+++.++|+|.||..|+..++... ...||.|+..+...++
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 457899999999999999999999999999998764 6789999999876544
No 113
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.04 E-value=2.6e-06 Score=78.38 Aligned_cols=48 Identities=29% Similarity=0.660 Sum_probs=44.1
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
...|+||.+.+.+++.++|+|.||..|+..++......||.||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 368999999999999999999999999999998777799999998875
No 114
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.01 E-value=2.3e-06 Score=70.23 Aligned_cols=54 Identities=31% Similarity=0.842 Sum_probs=45.8
Q ss_pred cCCCCCCCccCCCCCcc-------eecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 620 DGEDFDCPICISPPSDI-------IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 620 ~~~~~~c~~c~~~~~~~-------~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
..+...|+||.+...++ +.++|+|.||..|+..++... ..||+||.++...++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhhee
Confidence 34578899999987766 889999999999999998765 5999999999876654
No 115
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.99 E-value=7.6e-06 Score=70.90 Aligned_cols=48 Identities=25% Similarity=0.717 Sum_probs=42.4
Q ss_pred CCCCCCccCCCCCcceecc-cCCccchhHHHHhhhcc-CCCCCCCCCCcc
Q 002901 622 EDFDCPICISPPSDIIITC-CAHIFCRSCILKTLQHT-KPCCPLCRHPLL 669 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~-c~h~~c~~ci~~~~~~~-~~~cp~c~~~~~ 669 (869)
+...|++|.+.+.+++.++ |+|.||..|+..++... ...||+|+..+.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4578999999999999999 99999999999998754 479999998863
No 116
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=4.2e-06 Score=70.68 Aligned_cols=47 Identities=34% Similarity=0.802 Sum_probs=42.4
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCcc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
....|+||.+.+.++++++|+|.||..|+..++.. ...||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 45789999999999999999999999999999865 568999999885
No 117
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.98 E-value=3.9e-06 Score=79.76 Aligned_cols=49 Identities=31% Similarity=0.689 Sum_probs=44.8
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCC
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQS 671 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 671 (869)
...|+||.+.+.+++.++|+|.||..|+..++......||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3689999999999999999999999999999998777899999988754
No 118
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.98 E-value=3.9e-06 Score=81.44 Aligned_cols=48 Identities=35% Similarity=0.907 Sum_probs=43.3
Q ss_pred CCCCCccCCCCCcceec-ccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 623 DFDCPICISPPSDIIIT-CCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
...|+||.+.+.+++.+ +|+|.||..|+..++......||+|+.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 35799999999999887 9999999999999999878899999998854
No 119
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.97 E-value=7.3e-06 Score=73.87 Aligned_cols=52 Identities=38% Similarity=0.922 Sum_probs=45.2
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccC--CCCCCCCCCccCCCcc
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTK--PCCPLCRHPLLQSDLF 674 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~--~~cp~c~~~~~~~~~~ 674 (869)
...|++|.+...+++.++|+|.||..|+..++.... ..||.|+.++...++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 468999999999999999999999999999998653 6899999988865543
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.96 E-value=3.3e-06 Score=89.58 Aligned_cols=52 Identities=25% Similarity=0.234 Sum_probs=46.1
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDL 673 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 673 (869)
..+.|+||.+.+.+||+++|+|.||+.||..++......||+|+.++...++
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 4678999999999999999999999999999998766669999999876544
No 121
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.95 E-value=3.2e-06 Score=81.98 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
..+.||+|.+.+.+||+++|||.||+.||..++......||+|+.++...++.
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI 157 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc
Confidence 35779999999999999999999999999999987544799999988765443
No 122
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.95 E-value=7.1e-06 Score=68.65 Aligned_cols=58 Identities=31% Similarity=0.722 Sum_probs=46.6
Q ss_pred CCCCCCCccCCCCCcc---eecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcccCCCC
Q 002901 621 GEDFDCPICISPPSDI---IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPE 679 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~---~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~~~~ 679 (869)
.....|+||++....+ ..++|+|.||..|+.+++... ..||+||..+...++...++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~ 73 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATNPPG 73 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCCCSS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCCCCC
Confidence 3467899999887643 556899999999999998755 689999999988777655543
No 123
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.94 E-value=7.1e-06 Score=63.47 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=41.2
Q ss_pred CCCCCCCccCCCCCc----ceecccCCccchhHHHHhhhccCCCCCCCCCCcc
Q 002901 621 GEDFDCPICISPPSD----IIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~----~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
.....|+||++...+ ++.++|+|.||..|+.+++... ..||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 346789999998754 7889999999999999998877 79999998764
No 124
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.93 E-value=4.5e-06 Score=78.35 Aligned_cols=47 Identities=32% Similarity=0.759 Sum_probs=41.7
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
+..|+||.+...++++++|+|.||..|+..++.. ...||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 4679999999999999999999999999998875 4589999988753
No 125
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=6.7e-06 Score=65.67 Aligned_cols=43 Identities=35% Similarity=0.773 Sum_probs=38.7
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhc--cCCCCCCC
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQH--TKPCCPLC 664 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~--~~~~cp~c 664 (869)
+...|+||.+...+++.++|+|.||..|+.+++.. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999999999999999999999999999985 45689988
No 126
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.91 E-value=1e-05 Score=71.18 Aligned_cols=48 Identities=31% Similarity=0.641 Sum_probs=42.2
Q ss_pred CCCCCccCCCCCcceec-ccCCccchhHHHHhhhccCCCCCCCCCCccCC
Q 002901 623 DFDCPICISPPSDIIIT-CCAHIFCRSCILKTLQHTKPCCPLCRHPLLQS 671 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 671 (869)
...|+||.+...+++.+ +|+|.||..|+..++.. ...||.|+..+...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChh
Confidence 46899999999999887 89999999999999885 46899999988753
No 127
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.88 E-value=4.7e-06 Score=75.92 Aligned_cols=51 Identities=31% Similarity=0.871 Sum_probs=45.7
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCC
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSD 672 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~ 672 (869)
+...|++|.+.+.+++.++|+|.||..|+..++......||+|+.++...+
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 346899999999999999999999999999999888779999999887644
No 128
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.88 E-value=3.1e-06 Score=76.63 Aligned_cols=61 Identities=26% Similarity=0.524 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCCCCccCCCCCcce------------------ecccCCccchhHHHHhhhc----cCCCCCCCCCC
Q 002901 610 LLKKLVEVLQDGEDFDCPICISPPSDII------------------ITCCAHIFCRSCILKTLQH----TKPCCPLCRHP 667 (869)
Q Consensus 610 ~~~~~~~~l~~~~~~~c~~c~~~~~~~~------------------~t~c~h~~c~~ci~~~~~~----~~~~cp~c~~~ 667 (869)
.+.++.+......+..|+||++.+..+. +++|+|.||..||..++.. ....||+||..
T Consensus 12 ~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 12 VIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp HHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred HHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 3444444444456678999998875433 7899999999999999963 35789999988
Q ss_pred ccC
Q 002901 668 LLQ 670 (869)
Q Consensus 668 ~~~ 670 (869)
+..
T Consensus 92 ~~~ 94 (114)
T 1v87_A 92 YGE 94 (114)
T ss_dssp SSS
T ss_pred cCC
Confidence 764
No 129
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=5.7e-06 Score=67.35 Aligned_cols=47 Identities=36% Similarity=0.955 Sum_probs=41.1
Q ss_pred CCCCCCccCCCCCcc-------eecccCCccchhHHHHhhhccCCCCCCCCCCcc
Q 002901 622 EDFDCPICISPPSDI-------IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~-------~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
+...|+||++...++ +.+.|+|.||..|+..++.. ...||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 467899999987765 88999999999999999877 568999998875
No 130
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=4.5e-06 Score=68.26 Aligned_cols=50 Identities=34% Similarity=0.798 Sum_probs=43.5
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCc
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDL 673 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 673 (869)
+...|+||++...+ +.++|+|.||..|+..++. ....||+||.++...+.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCc
Confidence 46789999999988 9999999999999999887 56799999998876543
No 131
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=7.6e-06 Score=71.17 Aligned_cols=52 Identities=29% Similarity=0.677 Sum_probs=44.2
Q ss_pred CCCCCCccCCCCCcceecc-cCCccchhHHHHhhhcc-----CCCCCC--CCCC-ccCCCc
Q 002901 622 EDFDCPICISPPSDIIITC-CAHIFCRSCILKTLQHT-----KPCCPL--CRHP-LLQSDL 673 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~-c~h~~c~~ci~~~~~~~-----~~~cp~--c~~~-~~~~~~ 673 (869)
..+.|+||.+.+.+||+++ |+|.||+.||..++... ...||+ |+.. +...++
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 4678999999999999995 99999999999999865 468999 8876 665444
No 132
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.85 E-value=8.6e-06 Score=73.95 Aligned_cols=51 Identities=41% Similarity=0.921 Sum_probs=46.0
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCc
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDL 673 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 673 (869)
...|+||.+.+.+++.++|+|.||..|+..++......||+|+.++...++
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 467999999999999999999999999999998877899999999876544
No 133
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=62.80 Aligned_cols=43 Identities=28% Similarity=0.813 Sum_probs=38.4
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhc--cCCCCCCC
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQH--TKPCCPLC 664 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~--~~~~cp~c 664 (869)
+...|+||.+...+++.++|+|.||..|+..++.. ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45789999999999999999999999999999765 56789987
No 134
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.84 E-value=7.2e-06 Score=88.87 Aligned_cols=55 Identities=25% Similarity=0.589 Sum_probs=48.1
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcccCC
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSP 677 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~~ 677 (869)
...|+||.+...+++.++|+|.||..|+...+......||+||.++.....+.++
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence 4789999999999999999999999999998886678999999999876655544
No 135
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.81 E-value=1.9e-05 Score=71.81 Aligned_cols=46 Identities=26% Similarity=0.725 Sum_probs=41.6
Q ss_pred CCCCCccCCCCCcceec-ccCCccchhHHHHhhhccCCCCCCCCCCccCC
Q 002901 623 DFDCPICISPPSDIIIT-CCAHIFCRSCILKTLQHTKPCCPLCRHPLLQS 671 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 671 (869)
...|+||.+...+++.+ +|+|.||..|+..++. ..||.|+.++...
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccc
Confidence 57899999999999998 9999999999999987 7899999987543
No 136
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.80 E-value=8.6e-06 Score=63.33 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=40.2
Q ss_pred CCCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 621 GEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
.+...|++|.+...+++.++|+|.||..|+.. ....||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEeec
Confidence 45678999999999999999999999999876 46689999988764
No 137
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.79 E-value=1.7e-05 Score=64.32 Aligned_cols=48 Identities=38% Similarity=0.964 Sum_probs=41.5
Q ss_pred CCCCCCccCCCCCcc-eecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 622 EDFDCPICISPPSDI-IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~-~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
....|++|.+...++ +.++|+|.||..|+..++... ..||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 457899999999885 788999999999999988654 699999998863
No 138
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.79 E-value=5.6e-06 Score=75.09 Aligned_cols=47 Identities=28% Similarity=0.855 Sum_probs=43.2
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCcc
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
+..|++|.+.+.+++.++|+|.||..|+..++......||.|+..+.
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 36799999999999999999999999999999877789999998876
No 139
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.76 E-value=2.2e-05 Score=60.63 Aligned_cols=47 Identities=28% Similarity=0.711 Sum_probs=38.8
Q ss_pred CCCCCCccCCCCCc---ceecc-cCCccchhHHHHhhhccCCCCCCCCCCcc
Q 002901 622 EDFDCPICISPPSD---IIITC-CAHIFCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 622 ~~~~c~~c~~~~~~---~~~t~-c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
+..+|+||++.... .+..+ |+|.||..|+..++.. ...||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 45789999998766 55565 9999999999999876 568999998763
No 140
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.76 E-value=1.2e-05 Score=71.84 Aligned_cols=49 Identities=27% Similarity=0.708 Sum_probs=43.3
Q ss_pred CCCCCCccCCCCCcceec-ccCCccchhHHHHhhhccCCCCCCCCCCccCC
Q 002901 622 EDFDCPICISPPSDIIIT-CCAHIFCRSCILKTLQHTKPCCPLCRHPLLQS 671 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 671 (869)
+...|++|.+.+.+++.+ +|+|.||..|+..++... ..||.|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 457899999999999987 999999999999998765 7899999988753
No 141
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=2.3e-05 Score=64.76 Aligned_cols=50 Identities=36% Similarity=0.705 Sum_probs=40.5
Q ss_pred CCCCCCCccCCCCCcc---eecccCCccchhHHHHhhhccCCCCCCCCCCccCC
Q 002901 621 GEDFDCPICISPPSDI---IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQS 671 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~---~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 671 (869)
.....|+||++....+ ...+|+|.||..|+..++.... .||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCcccccc
Confidence 3467899999987654 3448999999999999987654 899999988653
No 142
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.64 E-value=3.8e-05 Score=62.42 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=40.3
Q ss_pred CCCCCCCccCCCCC---cceecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 621 GEDFDCPICISPPS---DIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 621 ~~~~~c~~c~~~~~---~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
.....|+||++... .++.++|+|.||..|+..++... ..||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 34578999988764 46778999999999999998775 479999988764
No 143
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=2.2e-05 Score=65.06 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=40.4
Q ss_pred CCCCCCccCCCCCcc---eecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 622 EDFDCPICISPPSDI---IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~---~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
+...|+||++....+ ..++|+|.||..|+..++... ..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 457899999887654 678899999999999998764 589999988764
No 144
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.60 E-value=8.4e-06 Score=76.57 Aligned_cols=49 Identities=20% Similarity=0.526 Sum_probs=44.0
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
+...|++|.+.+.+++.+.|+|.||..||..++......||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4578999999999999999999999999999998777799999987643
No 145
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.57 E-value=2.6e-05 Score=67.30 Aligned_cols=48 Identities=31% Similarity=0.665 Sum_probs=39.9
Q ss_pred CCCCCCccCCCCCc---ceecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 622 EDFDCPICISPPSD---IIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 622 ~~~~c~~c~~~~~~---~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
....|+||++.... ...++|+|.||..|+..++.. ...||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 45679999987655 677889999999999999875 4589999988753
No 146
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.53 E-value=4.3e-05 Score=61.09 Aligned_cols=49 Identities=29% Similarity=0.594 Sum_probs=41.6
Q ss_pred cCCCCCCCccCCCCCcceec--ccCCc-cchhHHHHhhhccCCCCCCCCCCcc
Q 002901 620 DGEDFDCPICISPPSDIIIT--CCAHI-FCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 620 ~~~~~~c~~c~~~~~~~~~t--~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
+.++..|.+|++...++++. +|+|. +|..|+...... ...||+||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 34567899999999998877 99999 899999988754 468999999885
No 147
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.51 E-value=3.8e-05 Score=74.79 Aligned_cols=51 Identities=31% Similarity=0.871 Sum_probs=45.8
Q ss_pred CCCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCC
Q 002901 622 EDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSD 672 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~ 672 (869)
+...|+||.+.+.+++.++|+|.||..|+..++......||.||.++...+
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 356899999999999999999999999999999887779999999887644
No 148
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=6.9e-05 Score=62.04 Aligned_cols=43 Identities=26% Similarity=0.708 Sum_probs=38.0
Q ss_pred CCCCCccCCCCCcceecccCCc-cchhHHHHhhhccCCCCCCCCCCccC
Q 002901 623 DFDCPICISPPSDIIITCCAHI-FCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
...|++|++...+++.++|+|. ||..|+... ..||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3579999999999999999999 999999643 689999998865
No 149
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.48 E-value=7.2e-05 Score=59.00 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=47.3
Q ss_pred CCCCCccCCCCCcceec-ccCCccchhHHHHhhhccCCCCCCCCCCccCCCcccCC
Q 002901 623 DFDCPICISPPSDIIIT-CCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSP 677 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~~ 677 (869)
.+.|++|.+.+.++|++ .|+|+||+.||.+++... ..||+++.++...+++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 46799999999999999 999999999999999865 4699999999988876543
No 150
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.46 E-value=3.8e-05 Score=78.07 Aligned_cols=53 Identities=30% Similarity=0.582 Sum_probs=45.3
Q ss_pred CCCCCCccCCCCCcceec-ccCCccchhHHHHhhhcc-CCCCCC--CCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDIIIT-CCAHIFCRSCILKTLQHT-KPCCPL--CRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t-~c~h~~c~~ci~~~~~~~-~~~cp~--c~~~~~~~~~~ 674 (869)
....||+|++.+.+||.. .|+|.||+.||..+++.. ...||. |+..+...++.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 456799999999999985 999999999999999864 468999 99988766553
No 151
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.45 E-value=5.2e-05 Score=62.62 Aligned_cols=43 Identities=26% Similarity=0.708 Sum_probs=38.8
Q ss_pred CCCCCccCCCCCcceecccCCc-cchhHHHHhhhccCCCCCCCCCCccC
Q 002901 623 DFDCPICISPPSDIIITCCAHI-FCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
...|++|.+...+++.++|+|. ||..|+... ..||+||.++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3589999999999999999999 999999876 789999998864
No 152
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.42 E-value=5.7e-05 Score=60.14 Aligned_cols=46 Identities=24% Similarity=0.585 Sum_probs=39.6
Q ss_pred CCCCCccCCCCCcceec--ccCCc-cchhHHHHhhhccCCCCCCCCCCcc
Q 002901 623 DFDCPICISPPSDIIIT--CCAHI-FCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t--~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
...|.+|++...++++. +|+|. +|..|+...... ...||+||.++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 46799999999888776 99998 999999987755 478999999885
No 153
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=8.3e-05 Score=62.55 Aligned_cols=49 Identities=27% Similarity=0.572 Sum_probs=39.1
Q ss_pred CCCCCCCccCCCCCc--------------c-eecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 621 GEDFDCPICISPPSD--------------I-IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~--------------~-~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
.++..|+||++...+ . +...|+|.|+..||.+.+... ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 346779999988754 3 344699999999999998876 489999988764
No 154
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00014 Score=58.87 Aligned_cols=45 Identities=24% Similarity=0.715 Sum_probs=39.5
Q ss_pred CCCCCCCccCCCCCcceecccCCc-cchhHHHHhhhccCCCCCCCCCCccC
Q 002901 621 GEDFDCPICISPPSDIIITCCAHI-FCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~~~t~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
.+...|.+|++...++++.+|+|. +|..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 345789999999999999999999 99999984 3689999998865
No 155
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.37 E-value=4.6e-05 Score=89.78 Aligned_cols=115 Identities=11% Similarity=0.126 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe-cC
Q 002901 698 VSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS-LK 776 (869)
Q Consensus 698 ~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S-~~ 776 (869)
+..+.+.|.++.... +..++||...-..++.+...|. .+..- ..-+++..+|.+++++|+ +. + .||+.. ..
T Consensus 433 ~~~~~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~--~-~vL~~v~~g 504 (620)
T 4a15_A 433 LDRMATVIEDIILKV-KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RD--H-GTIFAVSGG 504 (620)
T ss_dssp HHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TS--C-CEEEEETTS
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cC--C-cEEEEEecC
Confidence 345555555554433 3457777777777877777776 23333 444455678999999999 32 2 566654 25
Q ss_pred Ccccccccc--ccCEEEEEcCCCCc-----------------------------chHHHHhhhhhhcCCcccEEE
Q 002901 777 ASGAGVNLT--AASRVFLLEPWWNP-----------------------------AVEEQAMDRVHRIGQKEDVKI 820 (869)
Q Consensus 777 agg~GLNLt--~A~~Vi~~dp~wnp-----------------------------~~e~QaigRvhRiGQ~k~V~V 820 (869)
..++|+|+. .+..||+.-.++-+ ....|++||+.|--+.+-|.+
T Consensus 505 sf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 505 RLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp CC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred ceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 899999995 47788887766432 113589999999777666544
No 156
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.34 E-value=7.4e-05 Score=69.32 Aligned_cols=54 Identities=31% Similarity=0.859 Sum_probs=46.1
Q ss_pred CCCCCCCccCCCCCcc-------eecccCCccchhHHHHhhhccCCCCCCCCCCccCCCccc
Q 002901 621 GEDFDCPICISPPSDI-------IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFS 675 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~-------~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 675 (869)
.+...|+||++...++ +.+.|+|.||..|+.+++.... .||+|+..+...++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCccccccc
Confidence 3467899999998777 8999999999999999987654 9999999998766644
No 157
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.23 E-value=0.00014 Score=60.76 Aligned_cols=43 Identities=26% Similarity=0.700 Sum_probs=38.7
Q ss_pred CCCCccCCCCCcceecccCCc-cchhHHHHhhhccCCCCCCCCCCccCC
Q 002901 624 FDCPICISPPSDIIITCCAHI-FCRSCILKTLQHTKPCCPLCRHPLLQS 671 (869)
Q Consensus 624 ~~c~~c~~~~~~~~~t~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~~ 671 (869)
..|++|++...++++.+|+|. ||..|+... ..||+||.++...
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 579999999999999999999 999999865 3999999988764
No 158
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.12 E-value=0.00035 Score=61.75 Aligned_cols=47 Identities=28% Similarity=0.520 Sum_probs=38.8
Q ss_pred CCCCCCccCCCCCcc------------------eecccCCccchhHHHHhhhccCCCCCCCCCCcc
Q 002901 622 EDFDCPICISPPSDI------------------IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~------------------~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
++..|+||.+....+ +..+|+|.|+..||...+.. ...||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 467899999887643 45789999999999999886 568999998754
No 159
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.09 E-value=0.00014 Score=63.14 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=39.5
Q ss_pred CCCCCCCccCCCCCcceec---ccCCccchhHHHHhhhcc-------CCCCCC--CCCC--ccC
Q 002901 621 GEDFDCPICISPPSDIIIT---CCAHIFCRSCILKTLQHT-------KPCCPL--CRHP--LLQ 670 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~~~t---~c~h~~c~~ci~~~~~~~-------~~~cp~--c~~~--~~~ 670 (869)
.+..+|+||++....+.+. .|+|.||..|+..++... ...||. |+.. +..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 3467899999998776543 699999999999998753 357999 9987 543
No 160
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.07 E-value=0.0013 Score=78.05 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=40.5
Q ss_pred hccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccC
Q 002901 393 LKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462 (869)
Q Consensus 393 l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N 462 (869)
+..++||++|.......... ..+....|+.||+|||-.+-.+ .++..|...++++|-|=|-|-
T Consensus 340 l~~~~vv~~t~~~a~~~~~~--~~~~~~~Fd~vIIDEAsQ~~e~-----~~lipL~~~~~~ILVGD~~QL 402 (646)
T 4b3f_X 340 LTSANVVLATNTGASADGPL--KLLPESYFDVVVIDECAQALEA-----SCWIPLLKARKCILAGDHKQL 402 (646)
T ss_dssp HHHCSEEEEETTTTCSSSGG--GGSCTTCCSEEEETTGGGSCHH-----HHTTTGGGSSEEEEEECTTSC
T ss_pred HhhcceeeeehhhhhhhhHH--HhhhhccCCEEEEcCccccchH-----HHHhhccccceEEEcCCcccc
Confidence 34567888887666543211 1234567899999998665332 334445556789999998773
No 161
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.86 E-value=0.00032 Score=64.90 Aligned_cols=53 Identities=32% Similarity=0.862 Sum_probs=44.6
Q ss_pred CCCCCCCccCCCCCcc-------eecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 621 GEDFDCPICISPPSDI-------IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~-------~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
.....|++|++....+ +.+.|+|.||..|+...+... ..||+||..+...++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcce
Confidence 4567899999987665 889999999999999998765 4899999999876554
No 162
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.79 E-value=0.00036 Score=75.25 Aligned_cols=44 Identities=25% Similarity=0.794 Sum_probs=39.5
Q ss_pred CCCCCCccCCCCCcceecccCCc-cchhHHHHhhhccCCCCCCCCCCccC
Q 002901 622 EDFDCPICISPPSDIIITCCAHI-FCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
+...|++|++...+++.++|+|. ||..|+... ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 45789999999999999999999 999999876 689999998863
No 163
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.002 Score=53.75 Aligned_cols=51 Identities=24% Similarity=0.628 Sum_probs=42.1
Q ss_pred CCCCCCccCCCC--CcceecccC-----CccchhHHHHhhhccC-CCCCCCCCCccCCC
Q 002901 622 EDFDCPICISPP--SDIIITCCA-----HIFCRSCILKTLQHTK-PCCPLCRHPLLQSD 672 (869)
Q Consensus 622 ~~~~c~~c~~~~--~~~~~t~c~-----h~~c~~ci~~~~~~~~-~~cp~c~~~~~~~~ 672 (869)
+...|.||++.. .++++++|. |.|...|+.+.+.... ..||+|+..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 456899999765 357789996 9999999999998764 78999999887544
No 164
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.57 E-value=0.0057 Score=72.15 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=40.7
Q ss_pred hccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccC
Q 002901 393 LKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462 (869)
Q Consensus 393 l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N 462 (869)
+..++||++|...+... .+....|+.||+|||..+-.+. ..+..+....+++|-|=|-|-
T Consensus 317 l~~~~vI~~T~~~~~~~------~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 317 LMNADVICCTCVGAGDP------RLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp HHTCSEEEEETGGGGCG------GGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred HhcCCEEEEcChhhcch------hhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 45678999998766432 2345679999999997665442 122223445789999999773
No 165
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.54 E-value=0.00046 Score=61.93 Aligned_cols=47 Identities=28% Similarity=0.520 Sum_probs=0.9
Q ss_pred CCCCCCccCCCCCcc------------------eecccCCccchhHHHHhhhccCCCCCCCCCCcc
Q 002901 622 EDFDCPICISPPSDI------------------IITCCAHIFCRSCILKTLQHTKPCCPLCRHPLL 669 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~------------------~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 669 (869)
.++.|+||.+....+ +..+|+|.|+..||...+.. ...||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 456899999876542 23589999999999999887 568999998754
No 166
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.20 E-value=0.01 Score=71.59 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=41.3
Q ss_pred hccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccC
Q 002901 393 LKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462 (869)
Q Consensus 393 l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N 462 (869)
+..++||++|...+... .+....|+.||+|||..+-++. ..+..+....+++|-|=|-|-
T Consensus 493 l~~a~VI~~T~~~~~~~------~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 493 LMNADVICCTCVGAGDP------RLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp HHHCSEEEEETGGGGCT------TTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hccCCEEEEchhhhCCh------hhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 45678999998776532 2455689999999997664332 223334456789999998773
No 167
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.01 Score=71.68 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=40.6
Q ss_pred hccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccC
Q 002901 393 LKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQN 462 (869)
Q Consensus 393 l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N 462 (869)
+..+|||++|...+... .+.. .|+.||+|||..+-.+. ..+..+....+++|-|=|-|-
T Consensus 496 l~~a~VI~~T~~~~~~~------~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 496 LNKADVVCCTCVGAGDK------RLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp HHTCSEEEEETTGGGCT------TCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hccCCEEEechhhcChH------HHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 45678999998776532 2344 89999999998774431 223333456789999999773
No 168
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.80 E-value=0.017 Score=67.19 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=31.5
Q ss_pred eeeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccCC
Q 002901 420 IEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNG 463 (869)
Q Consensus 420 ~~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N~ 463 (869)
..++.||+||||.+-.. .....+..+....+++|.|-|-|..
T Consensus 278 ~~~dvlIIDEasml~~~--~~~~Ll~~~~~~~~lilvGD~~QL~ 319 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDA--LMLSLLAAVPPGARVLLVGDTDQLP 319 (574)
T ss_dssp CSCSEEEECCGGGCCHH--HHHHHHTTSCTTCEEEEEECTTSCC
T ss_pred ccCCEEEEcCccCCCHH--HHHHHHHhCcCCCEEEEEecccccC
Confidence 46789999999998432 3444555667788999999998853
No 169
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.56 E-value=0.0083 Score=51.01 Aligned_cols=48 Identities=25% Similarity=0.594 Sum_probs=40.4
Q ss_pred CCCccCCCCCc-ceecccCCccchhHHHHhhhccCCCCCCCCCCccCCC
Q 002901 625 DCPICISPPSD-IIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSD 672 (869)
Q Consensus 625 ~c~~c~~~~~~-~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~ 672 (869)
-|+.|.-+... .-+.+|.|+||.+|+..+.......||+|+.++..-+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 37778777655 6789999999999999998888889999999887543
No 170
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.87 E-value=0.19 Score=56.76 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=27.9
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhh-cccCeEEEEecccccC
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTN-LNAKRRWVVTGTPIQN 462 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~-L~a~~r~~LTGTPi~N 462 (869)
.++.||+||+|.+- ..+...+.. +....++++.|-|-|.
T Consensus 128 ~~~~iiiDE~~~~~---~~~~~~l~~~~~~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 128 KCRVLICDEVSMYD---RKLFKILLSTIPPWCTIIGIGDNKQI 167 (459)
T ss_dssp SCSEEEESCGGGCC---HHHHHHHHHHSCTTCEEEEEECTTSC
T ss_pred CCCEEEEECchhCC---HHHHHHHHHhccCCCEEEEECCHHHc
Confidence 46789999999873 334444443 4567889999998873
No 171
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.55 E-value=0.021 Score=60.02 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=38.0
Q ss_pred CCCCCCccCCCCCc----c---e-ecccCCccchhHHHHhhhcc----------CCCCCCCCCCccC
Q 002901 622 EDFDCPICISPPSD----I---I-ITCCAHIFCRSCILKTLQHT----------KPCCPLCRHPLLQ 670 (869)
Q Consensus 622 ~~~~c~~c~~~~~~----~---~-~t~c~h~~c~~ci~~~~~~~----------~~~cp~c~~~~~~ 670 (869)
...+|+||.+.... + . ...|+|.|...|+.+.+... .+.||+|+.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45789999987544 1 1 25899999999999998764 2579999998863
No 172
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.52 E-value=0.11 Score=60.71 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=33.2
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhhcccCeEEEEecccccCChhh
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFD 466 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~N~l~D 466 (869)
.++.||||||+++.. ......+..+....+++|-|=|-|-..-+
T Consensus 262 ~~d~lIIDEAsml~~--~~~~~Ll~~l~~~~~liLvGD~~QL~~V~ 305 (608)
T 1w36_D 262 HLDVLVVDEASMIDL--PMMSRLIDALPDHARVIFLGDRDQLASVE 305 (608)
T ss_dssp SCSEEEECSGGGCBH--HHHHHHHHTCCTTCEEEEEECTTSGGGTS
T ss_pred CCCEEEEechhhCCH--HHHHHHHHhCCCCCEEEEEcchhhcCCCC
Confidence 678999999998742 23455566777889999999998765543
No 173
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.43 E-value=3.4 Score=48.39 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=30.0
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhhcc-cCeEEEEeccccc
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTNLN-AKRRWVVTGTPIQ 461 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~L~-a~~r~~LTGTPi~ 461 (869)
+|+.|+|||+|-+ +..+...+..|. ....+++.|-|-|
T Consensus 213 ~~~~ilVDE~QD~---~~~q~~ll~~l~~~~~~l~~vGD~~Q 251 (647)
T 3lfu_A 213 RFTNILVDEFQDT---NNIQYAWIRLLAGDTGKVMIVGDDDQ 251 (647)
T ss_dssp HCCEEEESSGGGC---CHHHHHHHHHHHTTTCEEEEEECGGG
T ss_pred hCCEEEEECcccC---CHHHHHHHHHHhcCCCEEEEEcCchh
Confidence 5889999999987 556777777774 4567899999977
No 174
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.20 E-value=0.16 Score=41.33 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=38.6
Q ss_pred CCCCCccCCCCCcce-ecccCCccchhHHHHhhhcc-CCCCCCCCCCccC
Q 002901 623 DFDCPICISPPSDII-ITCCAHIFCRSCILKTLQHT-KPCCPLCRHPLLQ 670 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~-~t~c~h~~c~~ci~~~~~~~-~~~cp~c~~~~~~ 670 (869)
..+|.||.+...... -..|.|.|-..|+.++++.. ...||+|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 467999999876432 23899999999999999765 4789999987763
No 175
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.11 E-value=0.047 Score=42.52 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=40.3
Q ss_pred cCCCCCCCccCCCCCcceecccC--C---ccchhHHHHhhhcc-CCCCCCCCCCcc
Q 002901 620 DGEDFDCPICISPPSDIIITCCA--H---IFCRSCILKTLQHT-KPCCPLCRHPLL 669 (869)
Q Consensus 620 ~~~~~~c~~c~~~~~~~~~t~c~--h---~~c~~ci~~~~~~~-~~~cp~c~~~~~ 669 (869)
+.+...|.||.+...++++.+|. + .+-..|+.+.+... ...||+|+..+.
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45567899999877777788865 3 88999999999864 678999998764
No 176
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.90 E-value=0.32 Score=53.12 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=29.0
Q ss_pred ceeeeeEEEEcCccccCCcChHHHHHHhh-cc--cCeEEEEecccccC
Q 002901 418 KKIEWWRVILDEAHVIKNANAQQSRTVTN-LN--AKRRWVVTGTPIQN 462 (869)
Q Consensus 418 ~~~~w~rVIlDEaH~ikn~~s~~~ka~~~-L~--a~~r~~LTGTPi~N 462 (869)
.......+|+||+|.+++. .....++.. +. ...++++++||-..
T Consensus 270 rG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 270 RGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRRSKIIITTTPNGL 316 (385)
T ss_dssp HTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTCCEEEEEECCCSS
T ss_pred cCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCCCcEEEEeCCCCc
Confidence 4455678999999999862 233334333 22 35788899999544
No 177
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.79 E-value=0.16 Score=49.55 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=24.4
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhhc-ccCeEEEEecc
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTNL-NAKRRWVVTGT 458 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~L-~a~~r~~LTGT 458 (869)
.++.|||||+|.+.. .....+..+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~---~~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP---SLFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCT---THHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCH---HHHHHHHHHHHCCCCEEEEee
Confidence 478899999999832 144444433 34778888888
No 178
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.36 E-value=0.21 Score=49.62 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=23.8
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhhc-ccCeEEEEecc
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTNL-NAKRRWVVTGT 458 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~L-~a~~r~~LTGT 458 (869)
.++.|+|||||.+... ....+..| .....+++||=
T Consensus 101 ~~dvViIDEaQF~~~~---~V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD---IVEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHhhCCCEEEEEec
Confidence 4789999999998432 22445553 34667888884
No 179
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=90.77 E-value=0.57 Score=54.85 Aligned_cols=43 Identities=23% Similarity=0.187 Sum_probs=26.7
Q ss_pred hccccEEEEechhhHhhhcccC---CCcceeeeeEEEEcCccccCC
Q 002901 393 LKMYDLVLTTYSTLAIEESWLE---SPVKKIEWWRVILDEAHVIKN 435 (869)
Q Consensus 393 l~~~dVVItTY~~l~~~~~~~~---~~l~~~~w~rVIlDEaH~ikn 435 (869)
+..+||||++|+.+........ ...-...-..||+||||++-+
T Consensus 173 ~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 173 LPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 3568999999988765431100 000012345799999999854
No 180
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=90.06 E-value=0.64 Score=54.15 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=29.4
Q ss_pred ceeeeeEEEEcCccccCCcChHHHHHHhhc-c--cCeEEEEecccccC
Q 002901 418 KKIEWWRVILDEAHVIKNANAQQSRTVTNL-N--AKRRWVVTGTPIQN 462 (869)
Q Consensus 418 ~~~~w~rVIlDEaH~ikn~~s~~~ka~~~L-~--a~~r~~LTGTPi~N 462 (869)
...+.+.+|+||+|.+++.. ....++... . ...++++++||-..
T Consensus 270 rG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 270 RGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred cCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 44456789999999997732 344444432 2 34788999999544
No 181
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.92 E-value=0.1 Score=52.53 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=24.0
Q ss_pred eeeeEEEEcCccccCCcChHHHHHHhhc-ccCeEEEEecc
Q 002901 420 IEWWRVILDEAHVIKNANAQQSRTVTNL-NAKRRWVVTGT 458 (869)
Q Consensus 420 ~~w~rVIlDEaH~ikn~~s~~~ka~~~L-~a~~r~~LTGT 458 (869)
-.++.|||||+|.+... +...+..| +....++++|-
T Consensus 88 ~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 34788999999997532 33344443 23677888886
No 182
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.59 E-value=0.55 Score=47.17 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=23.0
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhhc-ccCeEEEEecc
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTNL-NAKRRWVVTGT 458 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~L-~a~~r~~LTGT 458 (869)
.++.|+|||||.+.. ....+..+ .....+++||=
T Consensus 90 ~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEECC
T ss_pred cCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEec
Confidence 368899999999953 44444443 34567888873
No 183
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.16 E-value=0.54 Score=46.03 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=23.0
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhhc-ccCeEEEEecc
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTNL-NAKRRWVVTGT 458 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~L-~a~~r~~LTGT 458 (869)
.++.|||||||.+.. .....+..+ .....++++|-
T Consensus 81 ~~dvViIDEaqfl~~---~~v~~l~~l~~~~~~Vi~~Gl 116 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDD---EIVEIVNKIAESGRRVICAGL 116 (191)
T ss_dssp TCSEEEECSGGGSCT---HHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCEEEEECCCCCCH---HHHHHHHHHHhCCCEEEEEec
Confidence 478999999999742 223444443 33557777874
No 184
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.80 E-value=0.77 Score=50.89 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=50.1
Q ss_pred eEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCCCChhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcC
Q 002901 351 ITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDE 429 (869)
Q Consensus 351 ~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDE 429 (869)
+.||++|. .+...|++.+.+.... .....-+.|++.+..... .......+.||+||
T Consensus 186 ~~lVlTpT~~aa~~l~~kl~~~~~~-------------------~~~~~~V~T~dsfL~~~~----~~~~~~~d~liiDE 242 (446)
T 3vkw_A 186 EDLILVPGRQAAEMIRRRANASGII-------------------VATKDNVRTVDSFLMNYG----KGARCQFKRLFIDE 242 (446)
T ss_dssp TCEEEESCHHHHHHHHHHHTTTSCC-------------------CCCTTTEEEHHHHHHTTT----SSCCCCCSEEEEET
T ss_pred CeEEEeCCHHHHHHHHHHhhhcCcc-------------------ccccceEEEeHHhhcCCC----CCCCCcCCEEEEeC
Confidence 36999998 4568898887533100 001122566666544331 12224578899999
Q ss_pred ccccCCcChHHHHHHhhcccCeEEEEeccccc
Q 002901 430 AHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQ 461 (869)
Q Consensus 430 aH~ikn~~s~~~ka~~~L~a~~r~~LTGTPi~ 461 (869)
|..+- .......+..+.+ .+++|.|=|-|
T Consensus 243 ~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 243 GLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp GGGSC--HHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred cccCC--HHHHHHHHHhCCC-CEEEEecCccc
Confidence 99872 2223333333444 89999999866
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.85 E-value=4.7 Score=42.93 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCcccccCCceeeeccccccCCCCCCCCCcceecCcCCChhHHHHHHHHhcc
Q 002901 201 LFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDK 273 (869)
Q Consensus 201 L~p~Q~~al~wm~~~e~~~~~~~~w~~~~~~y~n~~t~~~~~~~p~~~~GgILAD~mGLGKTl~~lali~~~~ 273 (869)
++|+|.+.+..+...-..+. ..+.-++.-+.|.|||..+.++.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~--------------------------~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGR--------------------------GHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTC--------------------------CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCC--------------------------cceeEEEECCCCchHHHHHHHHHHHHh
Confidence 68999999887765422111 113467788999999999998887654
No 186
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=83.20 E-value=7.3 Score=44.65 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=57.4
Q ss_pred ceEEEecCh-hHHHHHHHHHHHhcCCCCeEEEEEeCCCC----C---------------------------C--------
Q 002901 350 KITLIVCPP-SVFSTWITQLEEHTVPGMLKTYMYYGDRT----Q---------------------------D-------- 389 (869)
Q Consensus 350 ~~tLIV~P~-sll~qW~~Ei~~~~~~~~l~v~~y~G~r~----~---------------------------~-------- 389 (869)
.++||++|+ .+..||.+++.+......+++.+..|... . +
T Consensus 48 ~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~ 127 (551)
T 3crv_A 48 PKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKL 127 (551)
T ss_dssp SEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHH
Confidence 458999998 57799999998876545677777776100 0 0
Q ss_pred ---------------hhhhccccEEEEechhhHhhhcccCCCcceeeeeEEEEcCccccCC
Q 002901 390 ---------------VEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKN 435 (869)
Q Consensus 390 ---------------~~~l~~~dVVItTY~~l~~~~~~~~~~l~~~~w~rVIlDEaH~ikn 435 (869)
......+||||+||+.+.......... .......||+||||++-+
T Consensus 128 ~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~-~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 128 KKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID-IDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC-CCSTTEEEEETTGGGGGG
T ss_pred HHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC-CCcCCeEEEEecccchHH
Confidence 011246799999999998874221111 113456899999999966
No 187
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=83.12 E-value=2.3 Score=50.10 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.6
Q ss_pred ceEEEecChh-HHHHHHHHHHHhcC
Q 002901 350 KITLIVCPPS-VFSTWITQLEEHTV 373 (869)
Q Consensus 350 ~~tLIV~P~s-ll~qW~~Ei~~~~~ 373 (869)
+|+|||+|.. ...||.+|++.++.
T Consensus 58 ~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 58 KPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCEEEEECCHHHHHHHHHHHHHHcC
Confidence 4699999985 56999999999983
No 188
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=81.96 E-value=1.9 Score=42.75 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=20.6
Q ss_pred eeeEEEEcCccccCCcChHHHHHHhhc-ccCeEEEEec
Q 002901 421 EWWRVILDEAHVIKNANAQQSRTVTNL-NAKRRWVVTG 457 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~s~~~ka~~~L-~a~~r~~LTG 457 (869)
+.+.|++||||.+... +...+..| ....++++.|
T Consensus 101 ~~dvV~IDEaQFf~~~---~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDE---IVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTH---HHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEechhcCCHH---HHHHHHHHHHCCCEEEEee
Confidence 4567999999998642 33333333 3455666655
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.28 E-value=8 Score=37.46 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=17.7
Q ss_pred CcceecCcCCChhHHHHHHHHh
Q 002901 250 GGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 250 GgILAD~mGLGKTl~~lali~~ 271 (869)
+-+|.-+.|.|||..+-++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4677889999999988777654
No 190
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=79.09 E-value=5.1 Score=42.03 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=32.1
Q ss_pred eeeEEEEcCccccCCcC-hHHHHHHhhcccCeEEEEecccccCChhhhHhhhhhhccCCCC
Q 002901 421 EWWRVILDEAHVIKNAN-AQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~-s~~~ka~~~L~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~ 480 (869)
....||+||+|.+.... ....+.+.......++++|++....-+..+.+-+..+...|++
T Consensus 110 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~ 170 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 170 (327)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC
T ss_pred CCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC
Confidence 45679999999984321 1112222222456678887765443334444444444444444
No 191
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=77.80 E-value=0.78 Score=44.81 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=22.1
Q ss_pred eeEEEEcCccccCCcChHHHHHHhhc-ccCeEEEEecc
Q 002901 422 WWRVILDEAHVIKNANAQQSRTVTNL-NAKRRWVVTGT 458 (869)
Q Consensus 422 w~rVIlDEaH~ikn~~s~~~ka~~~L-~a~~r~~LTGT 458 (869)
.+.|++||||.++. +...+..| ....+++++|=
T Consensus 92 ~DvIlIDEaQFfk~----~ve~~~~L~~~gk~VI~~GL 125 (195)
T 1w4r_A 92 VAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 125 (195)
T ss_dssp CSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEEEE
T ss_pred CCEEEEEchhhhHH----HHHHHHHHHHCCCeEEEEec
Confidence 46799999999933 33444444 55667777773
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.60 E-value=8 Score=40.69 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=36.1
Q ss_pred eeeEEEEcCccccCCcC--hHHHHHHhhcccCeEEEEecccccCChhhhHhhhhhhccCCCC
Q 002901 421 EWWRVILDEAHVIKNAN--AQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480 (869)
Q Consensus 421 ~w~rVIlDEaH~ikn~~--s~~~ka~~~L~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~ 480 (869)
....|||||+|.+.... ....+.+.......++++|.++...-...|.+-+..+...+.+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~ 166 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPT 166 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCC
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCC
Confidence 45679999999984111 1112222333457788888888765556666655555555544
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=75.93 E-value=4.4 Score=42.90 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=19.8
Q ss_pred CCCcceecCcCCChhHHHHHHHHh
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~ 271 (869)
.+|-+|.-+.|.|||..+-++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 367888999999999988877654
No 194
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=75.67 E-value=3.6 Score=34.32 Aligned_cols=52 Identities=25% Similarity=0.542 Sum_probs=40.3
Q ss_pred CCCCCccCCCCCcceecccCCccchhHHHHhhhccCCCCCCCCCCccCCCcccC
Q 002901 623 DFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSS 676 (869)
Q Consensus 623 ~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~~ 676 (869)
...|..|--... .++...-|.+|..|+..++..+. .||.|..++...-.++.
T Consensus 28 ~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 28 PQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVSN-RCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSSS-EETTTTEECCCCSCTTT
T ss_pred cccChhhccccC-CeeeecchhhHHHHHHHHHhhcc-CCcccCCcCCcceecCc
Confidence 456777754443 78899999999999999988765 89999998876544443
No 195
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=74.08 E-value=1.8 Score=45.46 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=19.5
Q ss_pred CCcceecCcCCChhHHHHHHHHhc
Q 002901 249 RGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~~ 272 (869)
.+-+|.-+.|.|||..+-++....
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 456888999999999988776654
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=71.26 E-value=10 Score=39.84 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=18.9
Q ss_pred CCcceecCcCCChhHHHHHHHHhc
Q 002901 249 RGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~~ 272 (869)
.+-+|.-+.|.|||..+-++....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 467788899999999887776554
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=70.86 E-value=13 Score=36.35 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=17.7
Q ss_pred CcceecCcCCChhHHHHHHHHhc
Q 002901 250 GGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 250 GgILAD~mGLGKTl~~lali~~~ 272 (869)
.-+|.-+.|.|||..+-++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999887776544
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=70.85 E-value=4.4 Score=38.21 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=19.5
Q ss_pred CCcceecCcCCChhHHHHHHHHhcc
Q 002901 249 RGGIFADDMGLGKTLTLLSLIALDK 273 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~~~ 273 (869)
++.+|.-+.|.|||..+-++.....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4567788999999998888776543
No 199
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=68.85 E-value=12 Score=37.00 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=19.0
Q ss_pred CCcceecCcCCChhHHHHHHHHhc
Q 002901 249 RGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~~ 272 (869)
++-+|.-+.|.|||..+-++....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456778899999999887776543
No 200
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=68.39 E-value=19 Score=30.54 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=44.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCC
Q 002901 716 KSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNP 763 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~ 763 (869)
-.+|||.-+..|.-|...++..|+.++.+......+.|.+-++.|...
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999999999873
No 201
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=68.03 E-value=9.4 Score=38.43 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHhc---CCCCCCCccCCCCCccee-cccCCccchhHHHHhhhcc-CCCCCCCCCCccC
Q 002901 606 NNPDLLKKLVEVLQD---GEDFDCPICISPPSDIII-TCCAHIFCRSCILKTLQHT-KPCCPLCRHPLLQ 670 (869)
Q Consensus 606 ~~~e~~~~~~~~l~~---~~~~~c~~c~~~~~~~~~-t~c~h~~c~~ci~~~~~~~-~~~cp~c~~~~~~ 670 (869)
..+.-+-++...+.+ +....|.+|.+....... ..|.+.|-..|+..++... ...||.|+.+...
T Consensus 160 l~~R~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 160 LHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp ECHHHHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred ecCccHHHHHHHHHHhcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 444444455544443 357789999998765322 2399999999999998765 5799999987643
No 202
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=67.56 E-value=7.7 Score=35.53 Aligned_cols=70 Identities=27% Similarity=0.509 Sum_probs=49.8
Q ss_pred cCCCCCCCccCCCCCcceecccCCccchhHHHHhhh----------ccCCCCCCCCCCccCCCcccCCCCCCCccccccc
Q 002901 620 DGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQ----------HTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKT 689 (869)
Q Consensus 620 ~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~~----------~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (869)
++.+..|.+|.+.-+...-..|-..||..|+...+. .....|+.|+..-.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl-------------------- 119 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL-------------------- 119 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT--------------------
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH--------------------
Confidence 456788999999887777778999999999997653 34678999974211
Q ss_pred ccccCcchHHHHHHHHHHhhhc
Q 002901 690 LKNFTSSKVSALLTLLLQLRDK 711 (869)
Q Consensus 690 ~~~~~s~K~~~L~~~L~~~~~~ 711 (869)
...-.+.+++++.+.+++.+
T Consensus 120 --~~l~~~c~~~~~~~~~~~~~ 139 (142)
T 2lbm_A 120 --LDLVTACNSVFENLEQLLQQ 139 (142)
T ss_dssp --HHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHhc
Confidence 11234567777777776644
No 203
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=66.82 E-value=3.2 Score=35.59 Aligned_cols=32 Identities=25% Similarity=0.658 Sum_probs=26.5
Q ss_pred CCCCCCccCCC-CCccee--cccCCccchhHHHHh
Q 002901 622 EDFDCPICISP-PSDIII--TCCAHIFCRSCILKT 653 (869)
Q Consensus 622 ~~~~c~~c~~~-~~~~~~--t~c~h~~c~~ci~~~ 653 (869)
++..|++|.+. ...++. ..|+|.||..|+...
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45789999965 566777 889999999999984
No 204
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=66.49 E-value=29 Score=29.90 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 714 TTKSVVFSQ------FRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 714 ~~K~lVFsq------~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+++||+. +-.+-......|+..|++|..+|=......+..+.+.... ..-|.|++
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~--~tvP~ifi 79 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNW--PTFPQLYI 79 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC--SSSCEEEE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCC--CCCCeEEE
Confidence 579999998 6788999999999999999988865555556555554433 23445544
No 205
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=65.30 E-value=20 Score=42.73 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=66.8
Q ss_pred ccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCC
Q 002901 692 NFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQA----AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767 (869)
Q Consensus 692 ~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~----~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~ 767 (869)
...|+|..+.+-.+...... +.+++|.+.....+..+...+.. .|+++..++|+++.++|...++...++ .
T Consensus 397 ~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g---~ 471 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG---Q 471 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS---C
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC---C
Confidence 44588877665554443322 67999999988777666665554 389999999999999999999999874 3
Q ss_pred CEEEEEecCCccccccccccCEEEE
Q 002901 768 PTVLLASLKASGAGVNLTAASRVFL 792 (869)
Q Consensus 768 ~~VlL~S~~agg~GLNLt~A~~Vi~ 792 (869)
+.|++.+.......+++...+.||+
T Consensus 472 ~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 472 IDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp CCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCEEEECHHHHhhhhhccCCceEEe
Confidence 4777777554444455555544444
No 206
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=64.82 E-value=7 Score=42.00 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.1
Q ss_pred CCCcceecCcCCChhHHHHHHHHh
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~ 271 (869)
.+|-+|.-+.|.|||..+-++...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 467888999999999998877764
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=61.66 E-value=32 Score=37.99 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=18.6
Q ss_pred CCcceecCcCCChhHHHHHHHHhc
Q 002901 249 RGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~~ 272 (869)
.+-+|.-+.|+|||..+-++....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457788899999999877766543
No 208
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=61.26 E-value=37 Score=29.39 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=41.1
Q ss_pred CCeEEEEe------ccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 714 TTKSVVFS------QFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 714 ~~K~lVFs------q~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+++||+ .+-.+-......|+..|++|..+|=......|..+.+.-.. ..-|.|++
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~--~tvP~ifi 77 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSW--PTYPQLYV 77 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCC--CCCCEEEE
Confidence 57999999 46778899999999999999998876666666555444333 23445554
No 209
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.07 E-value=10 Score=31.27 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=39.2
Q ss_pred CCCCCCCccCCCCCc-----ce--ecccCCccchhHHHHhhhccCCCCCCCCCCccC
Q 002901 621 GEDFDCPICISPPSD-----II--ITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQ 670 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~-----~~--~t~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 670 (869)
.....|.||.+.... ++ --.|+-.+|+.|.+-........||-|..++..
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 344679999987432 22 235788899999999999999999999998874
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.90 E-value=12 Score=41.67 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCCcceecCcCCChhHHHHHHHHhc
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~~ 272 (869)
.+|-+|.-+.|.|||..+-++....
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3688899999999999988877653
No 211
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=60.61 E-value=9.1 Score=39.84 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=32.7
Q ss_pred eeeeEEEEcCccccCCcChHHHHHHhhc----ccCeEEEEecccccCChhhhHhhhhhhccCCCC
Q 002901 420 IEWWRVILDEAHVIKNANAQQSRTVTNL----NAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFS 480 (869)
Q Consensus 420 ~~w~rVIlDEaH~ikn~~s~~~ka~~~L----~a~~r~~LTGTPi~N~l~DL~sll~fL~~~~~~ 480 (869)
-....|||||+|.+.. ....++..+ ....+++++++....-...+.+-+..+...|++
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp CCCEEEEEETGGGSCH---HHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred CCceEEEEeCCCcCCH---HHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 3467799999999843 222233332 345677887766444344455544444444444
No 212
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=58.42 E-value=8.8 Score=30.86 Aligned_cols=37 Identities=24% Similarity=0.597 Sum_probs=30.6
Q ss_pred CCCCCCCccCCCCCcceeccc----CCccchhHHHHhhhcc
Q 002901 621 GEDFDCPICISPPSDIIITCC----AHIFCRSCILKTLQHT 657 (869)
Q Consensus 621 ~~~~~c~~c~~~~~~~~~t~c----~h~~c~~ci~~~~~~~ 657 (869)
+...-|.+|.+.+++..+.+| .|.||-.|-...++.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 445679999999998766665 6889999999999876
No 213
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=57.37 E-value=41 Score=29.60 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=41.3
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCc---EEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 714 TTKSVVFSQ------FRKMLILLEEPLQAAGFK---LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 714 ~~K~lVFsq------~~~~ld~l~~~L~~~gi~---~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+++||+. +-.+-......|+..|++ |..+|=......|..+.+.... ..-|.|++
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~--~tvP~vfI 80 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEW--PTIPQLYV 80 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCC--CCCCeEEE
Confidence 579999998 677889999999999998 8888766666666655554433 23455555
No 214
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=53.49 E-value=60 Score=27.39 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=39.1
Q ss_pred CCeEEEEe------ccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCC
Q 002901 714 TTKSVVFS------QFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGN 762 (869)
Q Consensus 714 ~~K~lVFs------q~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~ 762 (869)
..+++||+ .|-.....+...|...|+.|..+|=......+..+...+..
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 34799998 47778889999999999999999887776667776666654
No 215
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=53.02 E-value=39 Score=29.24 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=18.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLL 742 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~ 742 (869)
+.+++|..........+...|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE 34 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE
Confidence 34666666666666666666666666543
No 216
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=50.28 E-value=30 Score=36.93 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=19.0
Q ss_pred CCcceecCcCCChhHHHHHHHHhc
Q 002901 249 RGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~~ 272 (869)
+..+|.-+.|.|||..+-++....
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 457778899999999887776643
No 217
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=50.27 E-value=23 Score=31.50 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=36.7
Q ss_pred EEEEeccHHH-H------HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhC
Q 002901 717 SVVFSQFRKM-L------ILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFG 761 (869)
Q Consensus 717 ~lVFsq~~~~-l------d~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~ 761 (869)
|.||+..... . ..+...|+..||.|..+|=+++...|.+++++..
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 4566654432 2 6788899999999999999999999999999983
No 218
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=50.17 E-value=61 Score=28.39 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=40.8
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 714 TTKSVVFSQ------FRKMLILLEEPLQAAGFK-LLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 714 ~~K~lVFsq------~~~~ld~l~~~L~~~gi~-~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+++||+. +-.........|+..|++ |..++=......|+.+.+.... ..-|.|++
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~--~tvP~vfI 82 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW--PTIPQVYL 82 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCC--CCcCeEEE
Confidence 368999998 678899999999999995 8888866666666655444333 23445544
No 219
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=50.03 E-value=43 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=41.2
Q ss_pred CCeEEEEec-cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 714 TTKSVVFSQ-FRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 714 ~~K~lVFsq-~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+++|||. |-.........|++.|++|..+|=..+.+.|+.+.+.- .+...-|.|++
T Consensus 3 ta~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~-~G~~tVP~I~i 61 (92)
T 2lqo_A 3 TAALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN-GGNRTVPTVKF 61 (92)
T ss_dssp SSCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS-SSSSCSCEEEE
T ss_pred CCcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc-CCCCEeCEEEE
Confidence 357889985 44678888999999999999999887877777766553 32223344444
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.86 E-value=80 Score=33.07 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.1
Q ss_pred cceecCcCCChhHHHHHHHHhc
Q 002901 251 GIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 251 gILAD~mGLGKTl~~lali~~~ 272 (869)
-+|.-+.|.|||-.+-++....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5677899999999888877654
No 221
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=47.62 E-value=91 Score=27.13 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=16.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKL 741 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~ 741 (869)
..+++|...-......+...|...|+.+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v 34 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHI 34 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEE
Confidence 3456666666666666666666655543
No 222
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=47.56 E-value=54 Score=35.42 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=62.7
Q ss_pred ccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCC
Q 002901 692 NFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQA---AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGP 768 (869)
Q Consensus 692 ~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~---~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~ 768 (869)
+..|+|..+.+-.+.... ..+.++||.+.....+..+...+.. .|+++..+.|+++.++|...++.+..++ +
T Consensus 44 pTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~---~ 118 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD---Y 118 (414)
T ss_dssp CSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC---C
T ss_pred CCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC---C
Confidence 456888875554444333 3478999999999999988888888 5889999999999988888888887632 3
Q ss_pred EEEEEecCCc
Q 002901 769 TVLLASLKAS 778 (869)
Q Consensus 769 ~VlL~S~~ag 778 (869)
.|+++|....
T Consensus 119 ~Iiv~Tp~~l 128 (414)
T 3oiy_A 119 HILVFSTQFV 128 (414)
T ss_dssp SEEEEEHHHH
T ss_pred CEEEECHHHH
Confidence 7888776544
No 223
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=47.21 E-value=1.1e+02 Score=26.92 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=39.9
Q ss_pred CeEEEEecc------HHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe
Q 002901 715 TKSVVFSQF------RKMLILLEEPLQAAGF-KLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS 774 (869)
Q Consensus 715 ~K~lVFsq~------~~~ld~l~~~L~~~gi-~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S 774 (869)
.+||||+-- -.+.......|...|+ +|..++=....+-|+.+. ++.. .+.-|.||+--
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~-~~sg-~~TvPqIFI~g 84 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIK-DYSN-WPTIPQVYLNG 84 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHH-HHHT-CCSSCEEEETT
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHH-Hhcc-CCCCCeEeECC
Confidence 699999853 4577788888999998 588887666666555554 4444 23466777643
No 224
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=45.82 E-value=49 Score=27.73 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=38.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccccccc--ccCEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLT--AASRVF 791 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt--~A~~Vi 791 (869)
+..+..++.....+.. +....+..+.+|-.++...-.+.++.++...+ .+.|+++|...... .... .|+.
T Consensus 25 ~~~v~~~~~~~~a~~~----~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~-~~~ii~~s~~~~~~-~~~~~~g~~~-- 96 (116)
T 3a10_A 25 GYEIDTAENGEEALKK----FFSGNYDLVILDIEMPGISGLEVAGEIRKKKK-DAKIILLTAYSHYR-SDMSSWAADE-- 96 (116)
T ss_dssp TCEEEEESSHHHHHHH----HHHSCCSEEEECSCCSSSCHHHHHHHHHHHCT-TCCEEEEESCGGGG-GCGGGGGSSE--
T ss_pred CCEEEEeCCHHHHHHH----HhcCCCCEEEEECCCCCCCHHHHHHHHHccCC-CCeEEEEECCcchH-HHHHhccccc--
Confidence 4455444443333333 33445666777655543333344444433112 23455555332211 1111 1222
Q ss_pred EEcCCCCcchHHHHhhhhh
Q 002901 792 LLEPWWNPAVEEQAMDRVH 810 (869)
Q Consensus 792 ~~dp~wnp~~e~QaigRvh 810 (869)
++.-++++....+++.++.
T Consensus 97 ~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 97 YVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEECCSSTHHHHHHHHHHT
T ss_pred eEECCCCHHHHHHHHHHHh
Confidence 2234556666666666553
No 225
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=45.09 E-value=16 Score=39.64 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=19.6
Q ss_pred CCCcceecCcCCChhHHHHHHHHh
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~ 271 (869)
.++-+|.-+.|.|||..+-++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 367888999999999988877543
No 226
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=44.96 E-value=78 Score=28.48 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=41.7
Q ss_pred CeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 715 TKSVVFSQ------FRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 715 ~K~lVFsq------~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
.+++||+. +-.....+...|+..|++|..+|=......|.++.+..... .-|.|++
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~--tvP~VfI 96 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWP--TFPQLWV 96 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCC--SSCEEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCC--CcCEEEE
Confidence 58999977 67788999999999999999998777766666666555442 3345544
No 227
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=44.93 E-value=1.2e+02 Score=29.15 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=61.7
Q ss_pred ccCcchHHHHHHHHHHhh-hcCCCCeEEEEeccHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHhCCCCC
Q 002901 692 NFTSSKVSALLTLLLQLR-DKKPTTKSVVFSQFRKMLILLEEPLQAA-----GFKLLRLDGSMNAKKRAQVIEEFGNPGP 765 (869)
Q Consensus 692 ~~~s~K~~~L~~~L~~~~-~~~~~~K~lVFsq~~~~ld~l~~~L~~~-----gi~~~rldG~~~~~~R~~~i~~F~~~~~ 765 (869)
+..++|..+.+-.+.... ....+.++||.+.....+..+.+.++.. ++++..+.|+.+..++.+.+..-
T Consensus 59 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~----- 133 (220)
T 1t6n_A 59 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN----- 133 (220)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS-----
T ss_pred CCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC-----
Confidence 445888766544444332 2223458999999988888888777764 78999999998876665554431
Q ss_pred CCCEEEEEecCCcc-----ccccccccCEEEEEc
Q 002901 766 GGPTVLLASLKASG-----AGVNLTAASRVFLLE 794 (869)
Q Consensus 766 ~~~~VlL~S~~agg-----~GLNLt~A~~Vi~~d 794 (869)
.+.|++.+....- ..+++...+.||+=|
T Consensus 134 -~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 134 -CPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp -CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred -CCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 2367777754331 234566666666533
No 228
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=44.38 E-value=61 Score=26.64 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=40.0
Q ss_pred eEEEEecc-HHHH------HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 716 KSVVFSQF-RKML------ILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 716 K~lVFsq~-~~~l------d~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
+++||+.. -... ......|+..|++|..+|=..+...|+++.+....+...-|.|++
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi 66 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN 66 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 67888753 3445 678888999999999999888878888777776531122345544
No 229
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=43.68 E-value=21 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.4
Q ss_pred ccCCCCeEEEEecCCCcCCCccEEEecCCCCeEeeeechhhh
Q 002901 45 TISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAA 86 (869)
Q Consensus 45 ~~~~~~~~~l~rep~n~~d~~ai~v~~~~g~~~G~i~~~~a~ 86 (869)
.+..||.|.+++.|.| +-+.+.|..| ++||||+..-.
T Consensus 59 pfkkGE~LeVI~~~e~----~wwLcRNs~G-kyGyVP~~yl~ 95 (102)
T 1ri9_A 59 QVKPGESLEVIQTTDD----TKVLCRNEEG-KYGYVLRSYLA 95 (102)
T ss_dssp CCCTTCBCEEEEESSS----SEEEEEETTT-EEEEEEGGGSC
T ss_pred CcCCCCEEEEEEeCCC----CEEEEECCCC-CCCceeHHHhc
Confidence 4568999999999986 4466777554 89999987543
No 230
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=43.57 E-value=12 Score=36.40 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=23.4
Q ss_pred eEEEEcCccccCC---cChHHHHHHhhcccCe----EEEEeccc
Q 002901 423 WRVILDEAHVIKN---ANAQQSRTVTNLNAKR----RWVVTGTP 459 (869)
Q Consensus 423 ~rVIlDEaH~ikn---~~s~~~ka~~~L~a~~----r~~LTGTP 459 (869)
.+|||||||.+-+ .....-+.+..+...+ -++|.|.|
T Consensus 89 ~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 89 SIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp CEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred eEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4599999999832 2233334555554333 58888888
No 231
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.02 E-value=22 Score=39.38 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=18.3
Q ss_pred CCcceecCcCCChhHHHHHHHHh
Q 002901 249 RGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~ 271 (869)
.+-||.-+.|.|||..+-++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 35688889999999988776654
No 232
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=42.41 E-value=1.5e+02 Score=29.43 Aligned_cols=94 Identities=19% Similarity=0.318 Sum_probs=59.2
Q ss_pred ccCcchHHHH-HHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHhCCCCCC
Q 002901 692 NFTSSKVSAL-LTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA----GFKLLRLDGSMNAKKRAQVIEEFGNPGPG 766 (869)
Q Consensus 692 ~~~s~K~~~L-~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~----gi~~~rldG~~~~~~R~~~i~~F~~~~~~ 766 (869)
+..|+|..+. +-++..+.....+.++||.+.....+..+.+.++.. |+.+..+.|+.+..+....+. .
T Consensus 88 ~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---- 160 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K---- 160 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T----
T ss_pred CCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C----
Confidence 4468887663 334444433344568999999888877777666553 899999999987655444332 2
Q ss_pred CCEEEEEecCCc------cccccccccCEEEE
Q 002901 767 GPTVLLASLKAS------GAGVNLTAASRVFL 792 (869)
Q Consensus 767 ~~~VlL~S~~ag------g~GLNLt~A~~Vi~ 792 (869)
.+.|++++.... ..++++...+.||+
T Consensus 161 ~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 161 KPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 236777775432 13455666666655
No 233
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.32 E-value=39 Score=28.21 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=41.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCC--CCCCEEEEEecCCccccccccccCEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPG--PGGPTVLLASLKASGAGVNLTAASRVF 791 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~--~~~~~VlL~S~~agg~GLNLt~A~~Vi 791 (869)
+..+..++.....++.+ ....+..+.+|-.++...-.+.++..+... + .+.|+++|...... ....+...-
T Consensus 25 g~~v~~~~~~~~~~~~l----~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~-~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 25 GFKVIWLVDGSTALDQL----DLLQPIVILMAWPPPDQSCLLLLQHLREHQADP-HPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TCEEEEESCHHHHHHHH----HHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCS-SCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CcEEEEecCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhccccC-CCCEEEEeCCCCch--hhhhcCHHH
Confidence 45565555544444443 334566777776554333334444444311 2 23455555332222 221111112
Q ss_pred EEcCCCCcchHHHHhhhhh
Q 002901 792 LLEPWWNPAVEEQAMDRVH 810 (869)
Q Consensus 792 ~~dp~wnp~~e~QaigRvh 810 (869)
++.-+.++....+++.++.
T Consensus 98 ~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 ILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp ECSSCSTTHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHHh
Confidence 3344566666666666553
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=42.30 E-value=47 Score=33.40 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCcceecCcCCChhHHHHHHHHh
Q 002901 249 RGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~ 271 (869)
..-+|.-+.|.|||..+-++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 45778889999999887766554
No 235
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=42.16 E-value=1.1e+02 Score=29.90 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=61.5
Q ss_pred ccCcchHHH-HHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHhCCCCC
Q 002901 692 NFTSSKVSA-LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA-----GFKLLRLDGSMNAKKRAQVIEEFGNPGP 765 (869)
Q Consensus 692 ~~~s~K~~~-L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~-----gi~~~rldG~~~~~~R~~~i~~F~~~~~ 765 (869)
+..++|.-+ ++-.+..+.....+.++||.+.....+..+.+.+... ++++..+.|+.+..++...+ +.
T Consensus 69 ~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~--- 142 (230)
T 2oxc_A 69 KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---KK--- 142 (230)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---TS---
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---cC---
Confidence 446889866 5555555544445679999999998888888877764 68889999998876654432 22
Q ss_pred CCCEEEEEecCCcc-----ccccccccCEEEE
Q 002901 766 GGPTVLLASLKASG-----AGVNLTAASRVFL 792 (869)
Q Consensus 766 ~~~~VlL~S~~agg-----~GLNLt~A~~Vi~ 792 (869)
+.|++.+....- ..+++...+.||+
T Consensus 143 --~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 143 --CHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp --CSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred --CCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 367777754331 2345555555544
No 236
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=41.59 E-value=73 Score=27.10 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=38.6
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCC
Q 002901 714 TTKSVVFSQ------FRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGN 762 (869)
Q Consensus 714 ~~K~lVFsq------~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~ 762 (869)
..+++||+. |-.....+...|+..|+.|..+|=......+.++.+....
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 68 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW 68 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC
Confidence 457999987 5557888899999999999999988777667776666644
No 237
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=40.64 E-value=38 Score=29.70 Aligned_cols=82 Identities=5% Similarity=0.041 Sum_probs=46.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcc---ccccccc----
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASG---AGVNLTA---- 786 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg---~GLNLt~---- 786 (869)
..+++|..........+...|...|+.+..... -.++++.++. ..+.++|+.....+ .|+.+-.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~---~~~dlvi~D~~l~~~~~~g~~~~~~l~~ 76 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFAS------AESFMRQQIS---DDAIGMIIEAHLEDKKDSGIELLETLVK 76 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESS------HHHHTTSCCC---TTEEEEEEETTGGGBTTHHHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCC------HHHHHHHHhc---cCCCEEEEeCcCCCCCccHHHHHHHHHh
Confidence 357888888888888888888887776553321 1234455544 23467777665443 4554321
Q ss_pred ---cCEEEEEcCCCCcchHHH
Q 002901 787 ---ASRVFLLEPWWNPAVEEQ 804 (869)
Q Consensus 787 ---A~~Vi~~dp~wnp~~e~Q 804 (869)
.-.||++...-++....+
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~ 97 (136)
T 3kto_A 77 RGFHLPTIVMASSSDIPTAVR 97 (136)
T ss_dssp TTCCCCEEEEESSCCHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHH
Confidence 224555555545443333
No 238
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=40.04 E-value=95 Score=26.58 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=38.4
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcc-----ccc-cccccCEEEEEcCCCCcchHHHHhhhhhhc
Q 002901 739 FKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASG-----AGV-NLTAASRVFLLEPWWNPAVEEQAMDRVHRI 812 (869)
Q Consensus 739 i~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg-----~GL-NLt~A~~Vi~~dp~wnp~~e~QaigRvhRi 812 (869)
+..+.+|-.++...-.++++.++...+ .+.|+++|..... ..+ ....+...-++.-++++....+++.++..-
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKS-PASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTC-CCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCC-CCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 566667766665555666666655332 3456666643321 111 111222223344566777777777776654
Q ss_pred CC
Q 002901 813 GQ 814 (869)
Q Consensus 813 GQ 814 (869)
++
T Consensus 126 ~~ 127 (135)
T 3eqz_A 126 QA 127 (135)
T ss_dssp C-
T ss_pred cc
Confidence 44
No 239
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=39.99 E-value=29 Score=30.66 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHhhhcCCC-CeEEEEec-cHHHHHHHHHHHHHcCCcEEEEeCCCCH
Q 002901 695 SSKVSALLTLLLQLRDKKPT-TKSVVFSQ-FRKMLILLEEPLQAAGFKLLRLDGSMNA 750 (869)
Q Consensus 695 s~K~~~L~~~L~~~~~~~~~-~K~lVFsq-~~~~ld~l~~~L~~~gi~~~rldG~~~~ 750 (869)
.+++..+.+.+.++. ++ .++||||+ .-.........|...|+.+..++|++..
T Consensus 72 ~~~~~~~~~~~~~~~---~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 72 SYKLKDIYLQAAELA---LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GGGHHHHHHHHHHHH---TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cccHHHHHHHHHHhc---cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 345556666665542 24 78999994 4455667788899999999999999754
No 240
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=39.45 E-value=15 Score=44.19 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCCCCccCCCCCcceecccC-CccchhHHHHhhhccCCCCCCCCCCccCCCcc
Q 002901 622 EDFDCPICISPPSDIIITCCA-HIFCRSCILKTLQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 622 ~~~~c~~c~~~~~~~~~t~c~-h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 674 (869)
+.+.|||-.+.+.+||+++.+ +.+-+.+|.+++.. +..||.-+.++...++.
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVT 942 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCE
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccc
Confidence 356699999999999999998 58999999999987 67899999999865544
No 241
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.77 E-value=42 Score=28.84 Aligned_cols=95 Identities=9% Similarity=-0.018 Sum_probs=47.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCC-CCCCEEEEEecCCccccccc--cccCEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPG-PGGPTVLLASLKASGAGVNL--TAASRV 790 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~-~~~~~VlL~S~~agg~GLNL--t~A~~V 790 (869)
+..+..++.....++.+ ....+..+.+|-.++...-.++++..+... ...+.|+++|......-... ..|+.
T Consensus 27 g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~- 101 (127)
T 3i42_A 27 GFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF- 101 (127)
T ss_dssp TEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE-
T ss_pred CCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH-
Confidence 44566665554444433 445677788886665544555555555420 12346666664332221111 11222
Q ss_pred EEEcCCCCcchHHHHhhhhhhcCC
Q 002901 791 FLLEPWWNPAVEEQAMDRVHRIGQ 814 (869)
Q Consensus 791 i~~dp~wnp~~e~QaigRvhRiGQ 814 (869)
++.-++++....+++.+.++-++
T Consensus 102 -~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 102 -YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp -EEESSCCHHHHHHHHHHHC----
T ss_pred -heeCCCCHHHHHHHHHHhhccCC
Confidence 34446678777788777766544
No 242
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A
Probab=38.59 E-value=32 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=28.9
Q ss_pred ccCCCCeEEEEecCCCcCCCccEEEecCCCCeEeeeechh
Q 002901 45 TISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSV 84 (869)
Q Consensus 45 ~~~~~~~~~l~rep~n~~d~~ai~v~~~~g~~~G~i~~~~ 84 (869)
.+..|+.+.++|.+.||-.-+ .+.|..| ++||||...
T Consensus 45 p~~~GE~LeII~~~e~p~g~W--l~RN~~G-~~GyVp~~~ 81 (96)
T 2gtj_A 45 SFKQGEQIEIIRITDNPEGKW--LGRTARG-SYGYIKTTA 81 (96)
T ss_dssp EECTTCCEEEEECTTCSSSCC--EEECTTC-CBCCCCGGG
T ss_pred CcCCCCEEEEEEccCCCCCeE--EEECCCC-CCCccchhh
Confidence 566899999999999885554 5777555 699999764
No 243
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=37.62 E-value=47 Score=29.84 Aligned_cols=61 Identities=11% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcc-cccc
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASG-AGVN 783 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg-~GLN 783 (869)
+.+++|...-......+...|...|+.+..... -.++++.+... .+.++|+.....+ .|+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~~---~~dliild~~l~~~~g~~ 64 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFAS------ATEALAGLSAD---FAGIVISDIRMPGMDGLA 64 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESC------HHHHHHTCCTT---CCSEEEEESCCSSSCHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECC------HHHHHHHHHhC---CCCEEEEeCCCCCCCHHH
Confidence 457888888888888888888877776543321 23355555552 2466666655433 4543
No 244
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=37.15 E-value=48 Score=29.13 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=14.9
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcE
Q 002901 715 TKSVVFSQFRKMLILLEEPLQAAGFKL 741 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~~gi~~ 741 (869)
.+++|...-......+...|...|+.+
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v 31 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNV 31 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEE
Confidence 355555555555555555555555543
No 245
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=36.65 E-value=1.7e+02 Score=25.26 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCC--ccccccc
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA--SGAGVNL 784 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~a--gg~GLNL 784 (869)
+.+++|..........+...|...|+.+..... . .++++.+... ..+.++|+.... +..|+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~---~~a~~~l~~~--~~~dlvi~D~~l~~~~~g~~~ 69 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALT---G---EAAVEKVSGG--WYPDLILMDIELGEGMDGVQT 69 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---H---HHHHHHHHTT--CCCSEEEEESSCSSSCCHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecC---h---HHHHHHHhcC--CCCCEEEEeccCCCCCCHHHH
Confidence 356777777777777777777777766543221 1 2234444331 123566666554 2455544
No 246
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=36.45 E-value=1.1e+02 Score=26.19 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=8.8
Q ss_pred CCCcchHHHHhhhhhh
Q 002901 796 WWNPAVEEQAMDRVHR 811 (869)
Q Consensus 796 ~wnp~~e~QaigRvhR 811 (869)
++++....+++.++.+
T Consensus 105 P~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 105 PFSPREVNARVKAILR 120 (136)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555555544
No 247
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.19 E-value=14 Score=40.34 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCcceecCcCCChhHHHHHHHHh
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~ 271 (869)
.+|.+|.-..|.|||+.|=|++..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 479999999999999999888765
No 248
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=34.81 E-value=73 Score=26.79 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=6.9
Q ss_pred CCCcchHHHHhhhh
Q 002901 796 WWNPAVEEQAMDRV 809 (869)
Q Consensus 796 ~wnp~~e~QaigRv 809 (869)
++++....+++.++
T Consensus 105 P~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 105 PFQPSRVVEALNKV 118 (120)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44555555555443
No 249
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=34.39 E-value=49 Score=28.23 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=32.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~ 749 (869)
.++.++||||+.-.........|...|+.+..++|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 44678999998777777888899999999999999875
No 250
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.38 E-value=77 Score=27.59 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=13.0
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCc
Q 002901 715 TKSVVFSQFRKMLILLEEPLQAAGFK 740 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~~gi~ 740 (869)
.+++|..........+...|...|+.
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~ 32 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFD 32 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCe
Confidence 34555555555555555555554444
No 251
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=34.25 E-value=1.1e+02 Score=25.97 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=17.7
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcEE
Q 002901 715 TKSVVFSQFRKMLILLEEPLQAAGFKLL 742 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~~gi~~~ 742 (869)
.+++|...-......+...|...|+.+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~ 31 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVK 31 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEEE
Confidence 4666666666666666666666665543
No 252
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=33.68 E-value=1.5e+02 Score=24.66 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=36.9
Q ss_pred CCeEEEEe-ccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHh
Q 002901 714 TTKSVVFS-QFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760 (869)
Q Consensus 714 ~~K~lVFs-q~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F 760 (869)
..+++||+ .|-..-..+...|+..|++|..+|=......++++.+..
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~ 62 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARA 62 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHh
Confidence 56888887 566788899999999999999999887766666555543
No 253
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.64 E-value=1.6e+02 Score=24.98 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=13.9
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcE
Q 002901 715 TKSVVFSQFRKMLILLEEPLQAAGFKL 741 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~~gi~~ 741 (869)
.+++|...-......+...|...|+.+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v 32 (132)
T 2rdm_A 6 VTILLADDEAILLLDFESTLTDAGFLV 32 (132)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHcCCEE
Confidence 345555555555555555555555443
No 254
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.20 E-value=1.3e+02 Score=28.85 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=67.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLL 793 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~ 793 (869)
..|+++++.+..+.++++..+.+.+..+..+.|+. ++-....++. + .++.|++ ..||.+-=|...-.+=..
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l--~~~v~~a~~~-~---~~~dVII---SRGgta~~lr~~~~iPVV 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASL--TRASKIAFGL-Q---DEVDAII---SRGATSDYIKKSVSIPSI 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCH--HHHHHHHHHH-T---TTCSEEE---EEHHHHHHHHTTCSSCEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCH--HHHHHHHHHh-c---CCCeEEE---ECChHHHHHHHhCCCCEE
Confidence 46899999999999999998888787888888886 3444455555 4 2336665 345555555544446667
Q ss_pred cCCCCcchHHHHhhhhhhcCCc
Q 002901 794 EPWWNPAVEEQAMDRVHRIGQK 815 (869)
Q Consensus 794 dp~wnp~~e~QaigRvhRiGQ~ 815 (869)
+-..+.....+++-++-+.+.+
T Consensus 75 ~I~~s~~Dil~al~~a~~~~~k 96 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKRFGNE 96 (196)
T ss_dssp EECCCHHHHHHHHHHHGGGCSE
T ss_pred EEcCCHhHHHHHHHHHHhhCCc
Confidence 7788899999999999888763
No 255
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=32.92 E-value=1.1e+02 Score=38.19 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=65.8
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCC
Q 002901 691 KNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQA---AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767 (869)
Q Consensus 691 ~~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~---~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~ 767 (869)
.+..|+|..+.+-.+.... ..+.++||.+..+..+..+...|.. .|+++..++|+++..+|...++.+..+ .
T Consensus 100 ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g---~ 174 (1104)
T 4ddu_A 100 APTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED---D 174 (1104)
T ss_dssp CSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS---C
T ss_pred eCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC---C
Confidence 3556899887666655544 3478999999999999999999888 578999999999998999999999874 2
Q ss_pred CEEEEEecCCc
Q 002901 768 PTVLLASLKAS 778 (869)
Q Consensus 768 ~~VlL~S~~ag 778 (869)
+.|+++|....
T Consensus 175 ~~IlV~Tp~rL 185 (1104)
T 4ddu_A 175 YHILVFSTQFV 185 (1104)
T ss_dssp CSEEEEEHHHH
T ss_pred CCEEEECHHHH
Confidence 37888775544
No 256
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=32.84 E-value=88 Score=26.76 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCc-cccccccc------
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKAS-GAGVNLTA------ 786 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~ag-g~GLNLt~------ 786 (869)
+.+++|..........+...|...|+.+.... + -.++++.++.. .+.++++..... ..|+.+-.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~---~~~a~~~l~~~---~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAA---D---GVDALELLGGF---TPDLMICDIAMPRMNGLKLLEHIRNRG 77 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEES---C---HHHHHHHHTTC---CCSEEEECCC-----CHHHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC---C---HHHHHHHHhcC---CCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 56888988888888999999988888755422 2 23455666552 346777776543 34555421
Q ss_pred -cCEEEEEcCCCCcchHHHHh
Q 002901 787 -ASRVFLLEPWWNPAVEEQAM 806 (869)
Q Consensus 787 -A~~Vi~~dp~wnp~~e~Qai 806 (869)
.-.||++....++....+++
T Consensus 78 ~~~~ii~~t~~~~~~~~~~~~ 98 (130)
T 3eod_A 78 DQTPVLVISATENMADIAKAL 98 (130)
T ss_dssp CCCCEEEEECCCCHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHH
Confidence 23466666665555444433
No 257
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.76 E-value=93 Score=26.84 Aligned_cols=30 Identities=13% Similarity=-0.010 Sum_probs=17.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLR 743 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~r 743 (869)
..+++|..........+...|...|+.+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 36 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVG 36 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEE
Confidence 345666666666666666666665555433
No 258
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=32.08 E-value=1.8e+02 Score=30.51 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=52.9
Q ss_pred ccCcchHHHHHH-HHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHhCCCCC
Q 002901 692 NFTSSKVSALLT-LLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA-----GFKLLRLDGSMNAKKRAQVIEEFGNPGP 765 (869)
Q Consensus 692 ~~~s~K~~~L~~-~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~-----gi~~~rldG~~~~~~R~~~i~~F~~~~~ 765 (869)
+..++|.-+.+- .+..+.....+.++||.+.....+..+...+... ++++..+.|+.+.++....+..-
T Consensus 53 ~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 127 (391)
T 1xti_A 53 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN----- 127 (391)
T ss_dssp SSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS-----
T ss_pred CCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC-----
Confidence 445888766443 3333332334568999999988888887777764 78999999998877666555431
Q ss_pred CCCEEEEEecC
Q 002901 766 GGPTVLLASLK 776 (869)
Q Consensus 766 ~~~~VlL~S~~ 776 (869)
.+.|+++|..
T Consensus 128 -~~~iiv~T~~ 137 (391)
T 1xti_A 128 -CPHIVVGTPG 137 (391)
T ss_dssp -CCSEEEECHH
T ss_pred -CCCEEEECHH
Confidence 1256666643
No 259
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.73 E-value=13 Score=41.00 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.0
Q ss_pred CCCCcceecCcCCChhHHHHHHHHhc
Q 002901 247 PLRGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 247 ~~~GgILAD~mGLGKTl~~lali~~~ 272 (869)
+.+|-+|.-+.|.|||+.|=|++...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34799999999999999998887653
No 260
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=31.65 E-value=1.1e+02 Score=26.86 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=46.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcc-cccccc-------
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASG-AGVNLT------- 785 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg-~GLNLt------- 785 (869)
..+++|..........+...|...|+.+....-. + -.++++.+... .+.++|+.....+ .|+.+-
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~-~---~~~a~~~l~~~---~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVD-N---GAKALYQVQQA---KYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEES-S---HHHHHHHHTTC---CCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEEC-C---HHHHHHHhhcC---CCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 4578888888888888888888887763322221 1 12345555552 2466776655432 354431
Q ss_pred --ccCEEEEEcCCCCcchHHHH
Q 002901 786 --AASRVFLLEPWWNPAVEEQA 805 (869)
Q Consensus 786 --~A~~Vi~~dp~wnp~~e~Qa 805 (869)
..-.||++...-++....++
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~ 99 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQC 99 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHH
Confidence 11235666655555443333
No 261
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=31.46 E-value=1.8e+02 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=11.9
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCc
Q 002901 716 KSVVFSQFRKMLILLEEPLQAAGFK 740 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~~gi~ 740 (869)
+++|...-......+...|...|+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~ 28 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYE 28 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEE
Confidence 4444444444444444444444443
No 262
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=31.26 E-value=1.4e+02 Score=26.00 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=41.8
Q ss_pred CeEEEEeccHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccc-ccccccCEEEE
Q 002901 715 TKSVVFSQFRKMLILLEEPLQA-AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAG-VNLTAASRVFL 792 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~-~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~G-LNLt~A~~Vi~ 792 (869)
..++.++.....+..+ +.. ..+..+.+|-.++...-.++++.++...+ .+.|+++|...-... ...-.+...-+
T Consensus 46 ~~v~~~~~~~~~~~~~---~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~ga~~~ 121 (146)
T 4dad_A 46 YRVTRTVGRAAQIVQR---TDGLDAFDILMIDGAALDTAELAAIEKLSRLHP-GLTCLLVTTDASSQTLLDAMRAGVRDV 121 (146)
T ss_dssp CEEEEECCCHHHHTTC---HHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCT-TCEEEEEESCCCHHHHHHHHTTTEEEE
T ss_pred eEEEEeCCHHHHHHHH---HhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCC-CCcEEEEeCCCCHHHHHHHHHhCCcee
Confidence 4555555444333322 222 45566666666655444455555443222 235555553322111 11112222222
Q ss_pred EcCCCCcchHHHHhhhhhhcC
Q 002901 793 LEPWWNPAVEEQAMDRVHRIG 813 (869)
Q Consensus 793 ~dp~wnp~~e~QaigRvhRiG 813 (869)
+.-++++.....++.++.+-.
T Consensus 122 l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 122 LRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EESSCCHHHHHHHHHHHHHTC
T ss_pred EcCCCCHHHHHHHHHHHHhhh
Confidence 333456666666666665433
No 263
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=31.05 E-value=1.4e+02 Score=37.34 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=63.8
Q ss_pred ccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCC
Q 002901 692 NFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQA----AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGG 767 (869)
Q Consensus 692 ~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~----~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~ 767 (869)
...++|....+..+.... ..+.+++|.+..+..+......+.. .++++..++|..+.+++...++....+ .
T Consensus 632 ~TGsGKT~val~aa~~~~--~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g---~ 706 (1151)
T 2eyq_A 632 DVGFGKTEVAMRAAFLAV--DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG---K 706 (1151)
T ss_dssp CCCTTTHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT---C
T ss_pred CCCCCHHHHHHHHHHHHH--HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC---C
Confidence 445888876554333322 2367999999988877777766654 368899999999999999999998874 3
Q ss_pred CEEEEEecCCcccccccccc
Q 002901 768 PTVLLASLKASGAGVNLTAA 787 (869)
Q Consensus 768 ~~VlL~S~~agg~GLNLt~A 787 (869)
+.|++.|.......+++...
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSE
T ss_pred CCEEEECHHHHhCCcccccc
Confidence 47888776555544554443
No 264
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.99 E-value=15 Score=40.62 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCCcceecCcCCChhHHHHHHHHh
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~ 271 (869)
.+|-+|.-+.|.|||+.|=|++..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 479999999999999998888765
No 265
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=30.95 E-value=1.2e+02 Score=26.22 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=8.0
Q ss_pred CCCcchHHHHhhhhhh
Q 002901 796 WWNPAVEEQAMDRVHR 811 (869)
Q Consensus 796 ~wnp~~e~QaigRvhR 811 (869)
+.++....+++.++.+
T Consensus 114 P~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 114 PLNFTLLEKTIKQLVE 129 (143)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3455555555555544
No 266
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=30.85 E-value=36 Score=36.49 Aligned_cols=48 Identities=27% Similarity=0.569 Sum_probs=36.8
Q ss_pred cCCCCCCCccCCCCCcceec--ccCCccchhHHHHhhhc---------cCCCCCCCCCC
Q 002901 620 DGEDFDCPICISPPSDIIIT--CCAHIFCRSCILKTLQH---------TKPCCPLCRHP 667 (869)
Q Consensus 620 ~~~~~~c~~c~~~~~~~~~t--~c~h~~c~~ci~~~~~~---------~~~~cp~c~~~ 667 (869)
++.+..|.+|.+.-+...-. .|...||..||...+.. ....|-+|.-.
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 46678899999876554445 89999999999998733 35789999843
No 267
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=30.50 E-value=37 Score=28.45 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=31.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 002901 713 PTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749 (869)
Q Consensus 713 ~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~ 749 (869)
++.++||||..-.........|...|+++..++|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4678999998877778888899999999999999863
No 268
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=29.75 E-value=1.5e+02 Score=32.03 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=55.8
Q ss_pred ccCcchHHHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHc-CC---cEEEEeCCCCHHHHHHHHHHhCCCCCCC
Q 002901 692 NFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAA-GF---KLLRLDGSMNAKKRAQVIEEFGNPGPGG 767 (869)
Q Consensus 692 ~~~s~K~~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~-gi---~~~rldG~~~~~~R~~~i~~F~~~~~~~ 767 (869)
+..++|.-..+..+..... .++.++||.+.....+.-....+... |+ .+..++|+.+..++..... .
T Consensus 31 ~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~----- 101 (494)
T 1wp9_A 31 PTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA---R----- 101 (494)
T ss_dssp CTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH---H-----
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc---C-----
Confidence 4468888877777665543 34789999999988888888877765 66 8999999998877655433 1
Q ss_pred CEEEEEecCCc
Q 002901 768 PTVLLASLKAS 778 (869)
Q Consensus 768 ~~VlL~S~~ag 778 (869)
..|+++|....
T Consensus 102 ~~ivv~T~~~l 112 (494)
T 1wp9_A 102 AKVIVATPQTI 112 (494)
T ss_dssp CSEEEECHHHH
T ss_pred CCEEEecHHHH
Confidence 15666665433
No 269
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.63 E-value=1e+02 Score=26.38 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=36.7
Q ss_pred CCeEEEEecc-HHHHH------HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHh
Q 002901 714 TTKSVVFSQF-RKMLI------LLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEF 760 (869)
Q Consensus 714 ~~K~lVFsq~-~~~ld------~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F 760 (869)
..+++||+.- -.+-. .+...|+..|+.|..+|=......|+++.+.+
T Consensus 7 ~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 7 GMVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred ccEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 3478888743 33445 68889999999999999988888888887776
No 270
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.53 E-value=44 Score=29.92 Aligned_cols=47 Identities=32% Similarity=0.752 Sum_probs=35.9
Q ss_pred cCCCCCCCccCCCCCcceecccCCccchhHHHHhh----------hccCCCCCCCCC
Q 002901 620 DGEDFDCPICISPPSDIIITCCAHIFCRSCILKTL----------QHTKPCCPLCRH 666 (869)
Q Consensus 620 ~~~~~~c~~c~~~~~~~~~t~c~h~~c~~ci~~~~----------~~~~~~cp~c~~ 666 (869)
++.+..|.+|.+.-+...-..|-..||..|+...+ ....-.|++|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35667899999886655556899999999999753 234578999973
No 271
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=29.49 E-value=1e+02 Score=25.87 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=13.9
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcE
Q 002901 716 KSVVFSQFRKMLILLEEPLQAAGFKL 741 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~~gi~~ 741 (869)
+++|...-......+...|...|+.+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v 32 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTV 32 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceE
Confidence 45555555555555555555555543
No 272
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.43 E-value=71 Score=27.76 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=8.1
Q ss_pred CCCcchHHHHhhhhhh
Q 002901 796 WWNPAVEEQAMDRVHR 811 (869)
Q Consensus 796 ~wnp~~e~QaigRvhR 811 (869)
+.++....+++.++.+
T Consensus 110 p~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 110 PWDNQKLLETLLNAAS 125 (140)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555555555543
No 273
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.21 E-value=18 Score=39.80 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.2
Q ss_pred CCCcceecCcCCChhHHHHHHHHh
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~ 271 (869)
.+|-+|.-..|.|||+.|-|++..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 479999999999999999888765
No 274
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=28.81 E-value=55 Score=36.56 Aligned_cols=65 Identities=17% Similarity=-0.005 Sum_probs=44.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccccCEEEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLL 793 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~GLNLt~A~~Vi~~ 793 (869)
+.++||.+......+.|.+.|...|++....+... .+.. + .|.++. .....|.-+..+.-+++-
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~----------~~~~---g--~v~i~~-g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EASD---R--GRYLMI-GAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG----------GCCT---T--CEEEEE-SCCCSCEEETTTTEEEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh----------hcCC---C--cEEEEE-cccccCcccCCCCEEEEE
Confidence 56899999888888999999999998865443310 1222 2 333332 566789988888888775
Q ss_pred c
Q 002901 794 E 794 (869)
Q Consensus 794 d 794 (869)
|
T Consensus 446 E 446 (483)
T 3hjh_A 446 E 446 (483)
T ss_dssp H
T ss_pred c
Confidence 5
No 275
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=28.72 E-value=50 Score=27.26 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.8
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 002901 715 TKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~ 749 (869)
.++||||+.-.........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999998877777888889999999778899875
No 276
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=28.70 E-value=49 Score=28.79 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=28.9
Q ss_pred ccceEEEecChhHH-HH-HHHHHHHhcCCCCeEEEEEeCCCCCChhhhccccEEEEechhh
Q 002901 348 GKKITLIVCPPSVF-ST-WITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTL 406 (869)
Q Consensus 348 ~~~~tLIV~P~sll-~q-W~~Ei~~~~~~~~l~v~~y~G~r~~~~~~l~~~dVVItTY~~l 406 (869)
..+.+|+||+..+= +. =...+++.+..-.+.+.+..-+-..-...+.++|+||+|-..-
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~~~~~DlIist~~l~ 80 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 80 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTSTTSCSEEEESSCCC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhccCCCCEEEECCccc
Confidence 45679999997432 22 1333333332112322222211111122356799999997543
No 277
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=28.16 E-value=38 Score=28.87 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~ 749 (869)
+++.++||||..-.........|...|+..+.+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 34678999987666666778889999999999999863
No 278
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=27.79 E-value=38 Score=28.51 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 002901 713 PTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMN 749 (869)
Q Consensus 713 ~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~ 749 (869)
++.++||||..-.........|...|+.+..++|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4678999998776777888899999999999999863
No 279
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=27.78 E-value=42 Score=29.27 Aligned_cols=83 Identities=8% Similarity=0.022 Sum_probs=50.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCC-ccccccccc-----
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAG-FKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKA-SGAGVNLTA----- 786 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~g-i~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~a-gg~GLNLt~----- 786 (869)
..+++|..........+...|...| +.+....... ++++.+.. ..+.++|+.... +..|+.+-.
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~------~a~~~l~~---~~~dlvi~D~~l~~~~g~~~~~~l~~~ 84 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDD------FLKGPPAD---TRPGIVILDLGGGDLLGKPGIVEARAL 84 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGG------GGGCCCTT---CCCSEEEEEEETTGGGGSTTHHHHHGG
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHH------HHHHHHhc---cCCCEEEEeCCCCCchHHHHHHHHHhh
Confidence 4588999999999999999999988 7766443321 23444444 234666666543 345665521
Q ss_pred --cCEEEEEcCCCCcchHHHH
Q 002901 787 --ASRVFLLEPWWNPAVEEQA 805 (869)
Q Consensus 787 --A~~Vi~~dp~wnp~~e~Qa 805 (869)
.-.||++...-++....++
T Consensus 85 ~~~~~ii~~s~~~~~~~~~~~ 105 (135)
T 3snk_A 85 WATVPLIAVSDELTSEQTRVL 105 (135)
T ss_dssp GTTCCEEEEESCCCHHHHHHH
T ss_pred CCCCcEEEEeCCCCHHHHHHH
Confidence 2346666665555444443
No 280
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.17 E-value=74 Score=28.39 Aligned_cols=83 Identities=7% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcc-cccccc-------
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASG-AGVNLT------- 785 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg-~GLNLt------- 785 (869)
+.+++|...-......+...|...|+.+..... -.++++..... .+.++|+.....+ .|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~~---~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTS------PLDALEALKGT---SVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESC------HHHHHHHHTTS---CCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCC------HHHHHHHHhcC---CCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 568888888888888888888888876553322 23355555552 2467777765433 455431
Q ss_pred ccCEEEEEcCCCCcchHHHH
Q 002901 786 AASRVFLLEPWWNPAVEEQA 805 (869)
Q Consensus 786 ~A~~Vi~~dp~wnp~~e~Qa 805 (869)
..-.||++...-++....++
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~ 97 (154)
T 2rjn_A 78 PDIERVVISGYADAQATIDA 97 (154)
T ss_dssp TTSEEEEEECGGGHHHHHHH
T ss_pred CCCcEEEEecCCCHHHHHHH
Confidence 12346666554444333333
No 281
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.79 E-value=1.1e+02 Score=26.28 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=43.3
Q ss_pred CCeEE-EEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccc-cccc--ccCE
Q 002901 714 TTKSV-VFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAG-VNLT--AASR 789 (869)
Q Consensus 714 ~~K~l-VFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~G-LNLt--~A~~ 789 (869)
+..++ .++.....+..+. ...+..+.+|-.++...-.+.++..+...+ .+.|+++|...-..- ...- .|+.
T Consensus 25 g~~v~~~~~~~~~a~~~~~----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~g~~~ 99 (134)
T 3f6c_A 25 DIEILAELTEGGSAVQRVE----TLKPDIVIIDVDIPGVNGIQVLETLRKRQY-SGIIIIVSAKNDHFYGKHCADAGANG 99 (134)
T ss_dssp TEEEEEEESSSTTHHHHHH----HHCCSEEEEETTCSSSCHHHHHHHHHHTTC-CSEEEEEECC---CTHHHHHHTTCSE
T ss_pred CcEEEEEcCCHHHHHHHHH----hcCCCEEEEecCCCCCChHHHHHHHHhcCC-CCeEEEEeCCCChHHHHHHHHhCCCE
Confidence 34444 4555544444433 345666777765554444455555554223 335565553332111 1111 1222
Q ss_pred EEEEcCCCCcchHHHHhhhhhhcC
Q 002901 790 VFLLEPWWNPAVEEQAMDRVHRIG 813 (869)
Q Consensus 790 Vi~~dp~wnp~~e~QaigRvhRiG 813 (869)
|+.- +.++....+++.++.+-+
T Consensus 100 -~l~k-p~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 100 -FVSK-KEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp -EEEG-GGCTHHHHHHHHHHHTTC
T ss_pred -EEeC-CCCHHHHHHHHHHHHCCC
Confidence 2223 356777777777666543
No 282
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=26.17 E-value=2.6e+02 Score=23.53 Aligned_cols=96 Identities=13% Similarity=-0.065 Sum_probs=51.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCC-CCCCEEEEEecCCccccccccccCEEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPG-PGGPTVLLASLKASGAGVNLTAASRVFL 792 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~-~~~~~VlL~S~~agg~GLNLt~A~~Vi~ 792 (869)
+..+..++.....+..+ ....+..+.+|-.++...-.++++..+... ...+.|+++|...-..-...-.+...-+
T Consensus 27 ~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~ 102 (133)
T 3nhm_A 27 EFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAY 102 (133)
T ss_dssp TSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEE
T ss_pred CcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceE
Confidence 56666666655555443 456788888887776555556666665421 1134666666443221122211111123
Q ss_pred EcCCCCcchHHHHhhhhhhcC
Q 002901 793 LEPWWNPAVEEQAMDRVHRIG 813 (869)
Q Consensus 793 ~dp~wnp~~e~QaigRvhRiG 813 (869)
+.-++++....+++.++-+-+
T Consensus 103 l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 103 LVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EESSCCHHHHHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHHHhhh
Confidence 334678888888888775543
No 283
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=26.14 E-value=1.4e+02 Score=28.75 Aligned_cols=93 Identities=9% Similarity=0.151 Sum_probs=54.5
Q ss_pred ccCcchHHH-HHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhCCCCCC
Q 002901 692 NFTSSKVSA-LLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQA----AGFKLLRLDGSMNAKKRAQVIEEFGNPGPG 766 (869)
Q Consensus 692 ~~~s~K~~~-L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~----~gi~~~rldG~~~~~~R~~~i~~F~~~~~~ 766 (869)
+..++|..+ ++-.+..+.....+.++||.+........+...+.. .++.+..+.|+.+..+... .+..
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---- 131 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLRD---- 131 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTT----
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCCC----
Confidence 456888876 566666554444567899999998887777777665 3788899999876544322 2221
Q ss_pred CCEEEEEecCCc-----cccccccccCEEEE
Q 002901 767 GPTVLLASLKAS-----GAGVNLTAASRVFL 792 (869)
Q Consensus 767 ~~~VlL~S~~ag-----g~GLNLt~A~~Vi~ 792 (869)
+.|++++.... ...+++...+.||+
T Consensus 132 -~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 132 -AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp -CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 36787775442 12344555555554
No 284
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=26.13 E-value=2.6e+02 Score=24.06 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=12.6
Q ss_pred CeEEEEeccHHHHHHHHHHHHHc
Q 002901 715 TKSVVFSQFRKMLILLEEPLQAA 737 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~~ 737 (869)
.+++|...-......+...|...
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~ 32 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTH 32 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC
Confidence 45555555555555555555543
No 285
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.08 E-value=19 Score=39.63 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred CCCcceecCcCCChhHHHHHHHHh
Q 002901 248 LRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 248 ~~GgILAD~mGLGKTl~~lali~~ 271 (869)
.+|-+|.-+.|.|||+.|=|++..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999888765
No 286
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.81 E-value=19 Score=39.87 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCCcceecCcCCChhHHHHHHHHh
Q 002901 247 PLRGGIFADDMGLGKTLTLLSLIAL 271 (869)
Q Consensus 247 ~~~GgILAD~mGLGKTl~~lali~~ 271 (869)
..+|-+|.-..|.|||+.|=|++..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3479999999999999998888764
No 287
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=25.75 E-value=3.1e+02 Score=23.34 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=45.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEe-cCCccccccccccCEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQA-AGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLAS-LKASGAGVNLTAASRVF 791 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~-~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S-~~agg~GLNLt~A~~Vi 791 (869)
+..+..++.....+.. +.. ..+..+.+|-.++...-.++++..+...+ .+.|+++| .... ... ..+. ..-
T Consensus 39 g~~v~~~~~~~~al~~----l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~-~~~ii~ls~~~~~-~~~-~~~~-~~~ 110 (138)
T 2b4a_A 39 GAEVTVHPSGSAFFQH----RSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTK-QPSVLILTTGRHE-LIE-SSEH-NLS 110 (138)
T ss_dssp TCEEEEESSHHHHHHT----GGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSS-CCEEEEEESCC---CCC-CSSS-CEE
T ss_pred CCEEEEeCCHHHHHHH----HHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC-CCCEEEEECCCCC-HHH-HHHH-HHh
Confidence 4455555544443333 333 45677777766654444566666665333 34666666 3322 121 2111 112
Q ss_pred EEcCCCCcchHHHHhhhhhh
Q 002901 792 LLEPWWNPAVEEQAMDRVHR 811 (869)
Q Consensus 792 ~~dp~wnp~~e~QaigRvhR 811 (869)
++.-++++....+++.++.+
T Consensus 111 ~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 111 YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EEESSCCHHHHHHHHHHTCC
T ss_pred eeeCCCCHHHHHHHHHHHHH
Confidence 23345677777777776643
No 288
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=25.43 E-value=1.3e+02 Score=25.13 Aligned_cols=12 Identities=8% Similarity=-0.111 Sum_probs=5.6
Q ss_pred cCCcEEEEeCCC
Q 002901 737 AGFKLLRLDGSM 748 (869)
Q Consensus 737 ~gi~~~rldG~~ 748 (869)
..+..+.+|-.+
T Consensus 43 ~~~dlil~D~~l 54 (121)
T 2pl1_A 43 HIPDIAIVDLGL 54 (121)
T ss_dssp SCCSEEEECSCC
T ss_pred cCCCEEEEecCC
Confidence 344455555444
No 289
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=25.32 E-value=1.1e+02 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=14.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcC
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAG 738 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~g 738 (869)
+.|++|..........+...|...|
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~ 39 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSG 39 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCC
Confidence 4456666666666666666665555
No 290
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.11 E-value=76 Score=28.30 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=20.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLL 742 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~ 742 (869)
..+++|..........+...|...|+.+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~ 42 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLH 42 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEE
Confidence 35677777777777777777777776544
No 291
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.01 E-value=2.5e+02 Score=26.31 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=9.1
Q ss_pred CCCCcchHHHHhhhhhh
Q 002901 795 PWWNPAVEEQAMDRVHR 811 (869)
Q Consensus 795 p~wnp~~e~QaigRvhR 811 (869)
-++++....+++.++.+
T Consensus 105 Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 105 KPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 34555555555555544
No 292
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.88 E-value=52 Score=30.53 Aligned_cols=47 Identities=26% Similarity=0.573 Sum_probs=34.8
Q ss_pred cCCCCCCCccCCCCCcceec--ccCCccchhHHHHhhhcc---------CCCCCCCCC
Q 002901 620 DGEDFDCPICISPPSDIIIT--CCAHIFCRSCILKTLQHT---------KPCCPLCRH 666 (869)
Q Consensus 620 ~~~~~~c~~c~~~~~~~~~t--~c~h~~c~~ci~~~~~~~---------~~~cp~c~~ 666 (869)
++.+..|.+|.+.-....-. .|...||.+||...+... .-.|-+|.-
T Consensus 76 DG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 46678899999865433333 699999999999876542 467888874
No 293
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.85 E-value=74 Score=26.98 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=8.5
Q ss_pred CCCcchHHHHhhhhhh
Q 002901 796 WWNPAVEEQAMDRVHR 811 (869)
Q Consensus 796 ~wnp~~e~QaigRvhR 811 (869)
++++....+++.++.+
T Consensus 105 P~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 105 PFDIDEIRDAVKKYLP 120 (124)
T ss_dssp SCCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhc
Confidence 4555555555555543
No 294
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=24.82 E-value=95 Score=36.77 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=19.4
Q ss_pred CCcceecCcCCChhHHHHHHHHhc
Q 002901 249 RGGIFADDMGLGKTLTLLSLIALD 272 (869)
Q Consensus 249 ~GgILAD~mGLGKTl~~lali~~~ 272 (869)
.+-+|.-+.|.|||..+-++....
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Confidence 467888899999999887777644
No 295
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.68 E-value=2.1e+02 Score=24.09 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=17.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCC
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGF 739 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi 739 (869)
..+++|..........+...|...|+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~ 29 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGF 29 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCC
Confidence 34667777766667777777776665
No 296
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=24.66 E-value=69 Score=28.03 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCCCeEEEEeccHHH--HHHHHHHHHHcCCcEEEEeCCCC
Q 002901 712 KPTTKSVVFSQFRKM--LILLEEPLQAAGFKLLRLDGSMN 749 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~--ld~l~~~L~~~gi~~~rldG~~~ 749 (869)
.++.++||||+.-.. .......|...|+.+..++|++.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 346789999987654 67888889999999888999874
No 297
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=24.44 E-value=2.5e+02 Score=26.85 Aligned_cols=94 Identities=14% Similarity=-0.059 Sum_probs=52.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc-cccccccCEEEE
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGA-GVNLTAASRVFL 792 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~agg~-GLNLt~A~~Vi~ 792 (869)
+..+..++.....++. +....+..+.+|-.++...-.+++...+...+ .+.|+++|...... -...-.+...-+
T Consensus 31 g~~v~~~~~~~~a~~~----~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~ga~~~ 105 (233)
T 1ys7_A 31 GFEVATAVDGAEALRS----ATENRPDAIVLDINMPVLDGVSVVTALRAMDN-DVPVCVLSARSSVDDRVAGLEAGADDY 105 (233)
T ss_dssp TCEEEEESSHHHHHHH----HHHSCCSEEEEESSCSSSCHHHHHHHHHHTTC-CCCEEEEECCCTTTCCCTTTTTTCSEE
T ss_pred CCEEEEECCHHHHHHH----HHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-CCCEEEEEcCCCHHHHHHHHHcCCCEE
Confidence 5566666555554443 34567888888877765444556666654233 34666666433211 112111111123
Q ss_pred EcCCCCcchHHHHhhhhhhc
Q 002901 793 LEPWWNPAVEEQAMDRVHRI 812 (869)
Q Consensus 793 ~dp~wnp~~e~QaigRvhRi 812 (869)
+.-+.++....+++.++.|-
T Consensus 106 l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 106 LVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp EESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhh
Confidence 34467899999999888653
No 298
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=24.22 E-value=84 Score=26.55 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHcCCc-EEEEeCCCCH
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFK-LLRLDGSMNA 750 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~~gi~-~~rldG~~~~ 750 (869)
.++.++||||+.-.........|...|++ +..++|++..
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 44678999998877777888889999996 7789998753
No 299
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=24.08 E-value=65 Score=26.07 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=26.4
Q ss_pred cEEEecCCCCeEeeeechhhhhhhccccCCce
Q 002901 66 AVKVLNTRTDQVGHIERSVAAVLAPLIDSGMI 97 (869)
Q Consensus 66 ai~v~~~~g~~~G~i~~~~a~~L~plld~~~v 97 (869)
-|++.+.+|.++|.++..-|..+|-=.+..+|
T Consensus 15 eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLV 46 (78)
T 1tif_A 15 EVRLIDQNGDQLGIKSKQEALEIAARRNLDLV 46 (78)
T ss_dssp EEEEECTTSCEEEEEEHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCcCCCcccHHHHHHHHHHcCCCEE
Confidence 38899999999999999999888875554444
No 300
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=23.34 E-value=2e+02 Score=32.94 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=50.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecC
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLK 776 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~ 776 (869)
+.++||.+.....+.-....|...|++...++|+++..++..++..+.... +.+.|++++..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKN-SELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTT-CCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhccc-CCCCEEEEChh
Confidence 458999999999998888899999999999999999999888888874311 24478887764
No 301
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=23.20 E-value=3.4e+02 Score=22.92 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCeEEEEec-cHHHHHHHHHHHHHcCCcEEEEeCCC--CHHHHHHHHHHhCCCCCCCCEEEE
Q 002901 714 TTKSVVFSQ-FRKMLILLEEPLQAAGFKLLRLDGSM--NAKKRAQVIEEFGNPGPGGPTVLL 772 (869)
Q Consensus 714 ~~K~lVFsq-~~~~ld~l~~~L~~~gi~~~rldG~~--~~~~R~~~i~~F~~~~~~~~~VlL 772 (869)
..+++||+. |-.....+...|+..|++|..++=.. ...+..+.+.+... ...-|.|++
T Consensus 16 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g-~~tvP~vfi 76 (114)
T 3h8q_A 16 RSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITN-QKTVPNIFV 76 (114)
T ss_dssp HCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHS-CCSSCEEEE
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhC-CCccCEEEE
Confidence 358999984 55678889999999999998887654 23444455544332 223445544
No 302
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=22.91 E-value=1e+02 Score=32.77 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=35.9
Q ss_pred CCCCccCCCCCccee-cccCCccchhH--HHHh-hhccCCCCCCCCCCccCCCcc
Q 002901 624 FDCPICISPPSDIII-TCCAHIFCRSC--ILKT-LQHTKPCCPLCRHPLLQSDLF 674 (869)
Q Consensus 624 ~~c~~c~~~~~~~~~-t~c~h~~c~~c--i~~~-~~~~~~~cp~c~~~~~~~~~~ 674 (869)
..||+-...+..|+- ..|.|.-|-+. +..+ .+.....||.|...+...++.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 458888887777765 46999977654 3333 334478999999888766654
No 303
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=22.62 E-value=64 Score=27.31 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHcCCc-EEEEeCCCC
Q 002901 712 KPTTKSVVFSQFRKMLILLEEPLQAAGFK-LLRLDGSMN 749 (869)
Q Consensus 712 ~~~~K~lVFsq~~~~ld~l~~~L~~~gi~-~~rldG~~~ 749 (869)
..+..+||||..-.........|...|+. +..++|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 34678999998877778888899999996 778899864
No 304
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=22.27 E-value=1.8e+02 Score=24.20 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=12.0
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCc
Q 002901 716 KSVVFSQFRKMLILLEEPLQAAGFK 740 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~~gi~ 740 (869)
+++|...-......+...|...|+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~ 28 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYT 28 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCe
Confidence 4444444444445555555444443
No 305
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=22.07 E-value=54 Score=22.72 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=21.1
Q ss_pred CCCCcccc---cCCc--eeeeccccccCCCCCC
Q 002901 220 ELPPFWEE---KGGG--FVNVLTNYHTDKRPEP 247 (869)
Q Consensus 220 ~~~~~w~~---~~~~--y~n~~t~~~~~~~p~~ 247 (869)
..++.|.+ .+|. |+|..|+..+=++|..
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~ 39 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPDG 39 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 35678988 2344 9999999988888864
No 306
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.83 E-value=1.2e+02 Score=26.83 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=11.4
Q ss_pred eEEEEeccHHHHHHHHHHHHHcC
Q 002901 716 KSVVFSQFRKMLILLEEPLQAAG 738 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~~g 738 (869)
|++|........+.+...|...|
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~ 44 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQP 44 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTST
T ss_pred EEEEEcCCHHHHHHHHHHHHhCC
Confidence 44555555555555555554443
No 307
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=21.74 E-value=3e+02 Score=21.79 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=36.1
Q ss_pred CeEEEEe-ccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCC
Q 002901 715 TKSVVFS-QFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGN 762 (869)
Q Consensus 715 ~K~lVFs-q~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~ 762 (869)
.++++|+ .|-.....+...|+..|+.|..++=......+.+..+.+..
T Consensus 6 ~~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~ 54 (92)
T 2khp_A 6 VDVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGR 54 (92)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTS
T ss_pred ccEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC
Confidence 3678887 45567888999999999999988877665566666666654
No 308
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=21.67 E-value=2.3e+02 Score=24.59 Aligned_cols=45 Identities=4% Similarity=-0.000 Sum_probs=20.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCC
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGN 762 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~ 762 (869)
+..+..++.....+..+. ...+..+.+|-.++...-.++++..+.
T Consensus 32 g~~v~~~~~~~~a~~~l~----~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 32 GFDIIQCGNAIEAVPVAV----KTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp TEEEEEESSHHHHHHHHH----HHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred CCeEEEeCCHHHHHHHHH----cCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 344554444444443332 234556666655443333344444443
No 309
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=21.55 E-value=77 Score=34.89 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=17.6
Q ss_pred ceecCcCCChhHHHHHHHHhcc
Q 002901 252 IFADDMGLGKTLTLLSLIALDK 273 (869)
Q Consensus 252 ILAD~mGLGKTl~~lali~~~~ 273 (869)
+++-..|.|||-++..|+....
T Consensus 104 livG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHHH
Confidence 4455699999999998887765
No 310
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.33 E-value=1.6e+02 Score=26.15 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCc-cccccccc------
Q 002901 714 TTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKAS-GAGVNLTA------ 786 (869)
Q Consensus 714 ~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~VlL~S~~ag-g~GLNLt~------ 786 (869)
..+++|..........+...|...|+.+..... -.++++.+... .+.++|+..... ..|+.+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~al~~l~~~---~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRN------GREAVRFLSLT---RPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESS------HHHHHHHHTTC---CCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCC------HHHHHHHHHhC---CCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 568888888888888888888888876544322 23355555552 246777776543 34555421
Q ss_pred ---cCEEEEEcCCCCcchHHH
Q 002901 787 ---ASRVFLLEPWWNPAVEEQ 804 (869)
Q Consensus 787 ---A~~Vi~~dp~wnp~~e~Q 804 (869)
.-.||++...-++....+
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~ 98 (154)
T 3gt7_A 78 DLRTIPVILLTILSDPRDVVR 98 (154)
T ss_dssp TTTTSCEEEEECCCSHHHHHH
T ss_pred CcCCCCEEEEECCCChHHHHH
Confidence 123566665545443333
No 311
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=21.31 E-value=73 Score=28.82 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCCeEEEEeccH--HHHHHHHHHHHHcCCcEEEEeCCCC
Q 002901 713 PTTKSVVFSQFR--KMLILLEEPLQAAGFKLLRLDGSMN 749 (869)
Q Consensus 713 ~~~K~lVFsq~~--~~ld~l~~~L~~~gi~~~rldG~~~ 749 (869)
.+.++||||..- .........|...|+++..++|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 467899999876 3567788889999999999999874
No 312
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.28 E-value=3e+02 Score=23.50 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=11.5
Q ss_pred eEEEEeccHHHHHHHHHHHHH-cCCc
Q 002901 716 KSVVFSQFRKMLILLEEPLQA-AGFK 740 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~-~gi~ 740 (869)
+++|..........+...|.. .|+.
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~~~~~ 31 (140)
T 3lua_A 6 TVLLIDYFEYEREKTKIIFDNIGEYD 31 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhccCcc
Confidence 444444444444444444444 4443
No 313
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.26 E-value=1.9e+02 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=11.8
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCc
Q 002901 716 KSVVFSQFRKMLILLEEPLQAAGFK 740 (869)
Q Consensus 716 K~lVFsq~~~~ld~l~~~L~~~gi~ 740 (869)
+++|..........+...|...|+.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~ 28 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQ 28 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCce
Confidence 3444444444444444444444443
No 314
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=21.15 E-value=68 Score=21.70 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=21.1
Q ss_pred CCCcccc---cCCc--eeeeccccccCCCCCCC
Q 002901 221 LPPFWEE---KGGG--FVNVLTNYHTDKRPEPL 248 (869)
Q Consensus 221 ~~~~w~~---~~~~--y~n~~t~~~~~~~p~~~ 248 (869)
..+.|.+ .+|. |+|..|+..+=++|..+
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~ 36 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence 3457888 3444 99999999998888754
No 315
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=21.15 E-value=49 Score=38.67 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=30.0
Q ss_pred eeeeEEEEcCccccCCcChHHHHHHhhccc-CeEEEEecccccC
Q 002901 420 IEWWRVILDEAHVIKNANAQQSRTVTNLNA-KRRWVVTGTPIQN 462 (869)
Q Consensus 420 ~~w~rVIlDEaH~ikn~~s~~~ka~~~L~a-~~r~~LTGTPi~N 462 (869)
-+|..|+|||+|-. +..++..+..|.. ...+++.|=|-|.
T Consensus 206 ~~~~~ilVDEfQDt---~~~Q~~ll~~L~~~~~~l~~vGD~~Qs 246 (673)
T 1uaa_A 206 NKIRYLLVDEYQDT---NTSQYELVKLLVGSRARFTVVGDDDQS 246 (673)
T ss_dssp TTCSEEEESCGGGC---BHHHHHHHHHHHTTTCCEEEECCGGGC
T ss_pred hhCcEEEEeccccC---CHHHHHHHHHHhcCCCeEEEEeCchhh
Confidence 35788999999986 5567777877744 4568888987553
No 316
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=21.13 E-value=3.8e+02 Score=22.76 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=42.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCC-CCCEEEEEecCCccc-cccccccCEEEE
Q 002901 715 TKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGP-GGPTVLLASLKASGA-GVNLTAASRVFL 792 (869)
Q Consensus 715 ~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~-~~~~VlL~S~~agg~-GLNLt~A~~Vi~ 792 (869)
..+..++.....++.+ ....+..+.+|-.++...-.++++..+.... ..+.|+++|...... -...-.+...-+
T Consensus 27 ~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 102 (140)
T 3n53_A 27 YLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
T ss_dssp SEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEE
T ss_pred ceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCee
Confidence 4555555554444444 3446778888877765555566666665320 233566655332211 111111111122
Q ss_pred EcCCCCcchHHHHhhhhhh
Q 002901 793 LEPWWNPAVEEQAMDRVHR 811 (869)
Q Consensus 793 ~dp~wnp~~e~QaigRvhR 811 (869)
+.-++++....+++.++.+
T Consensus 103 l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 103 LTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHh
Confidence 2335677777777766654
No 317
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.83 E-value=1.4e+02 Score=25.58 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=10.6
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhC
Q 002901 738 GFKLLRLDGSMNAKKRAQVIEEFG 761 (869)
Q Consensus 738 gi~~~rldG~~~~~~R~~~i~~F~ 761 (869)
.+..+.+|-.++...-.++++..+
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~ 74 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEMLDRIK 74 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 455555554444333333444443
No 318
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=20.40 E-value=1.7e+02 Score=31.14 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCcEEEEeCC------CCHHHHHHHHHHhCCCCCCCCEEEEEecCCc--ccccccc------ccCEEEEEc
Q 002901 729 LLEEPLQAAGFKLLRLDGS------MNAKKRAQVIEEFGNPGPGGPTVLLASLKAS--GAGVNLT------AASRVFLLE 794 (869)
Q Consensus 729 ~l~~~L~~~gi~~~rldG~------~~~~~R~~~i~~F~~~~~~~~~VlL~S~~ag--g~GLNLt------~A~~Vi~~d 794 (869)
.+-++|-+.|+.-+.+-|+ ++.+||.++++...+.-.+.+.|+. .+.+. .+-+.+. .|+-+.++-
T Consensus 84 ~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia-Gvg~~st~eai~la~~A~~~Gadavlvv~ 162 (360)
T 4dpp_A 84 DLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 162 (360)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3344445567877777775 3678888888765542223334443 21111 1122221 378888888
Q ss_pred CCCCcchHHHHhhhhhhcCCcccEEEEEE
Q 002901 795 PWWNPAVEEQAMDRVHRIGQKEDVKIVRL 823 (869)
Q Consensus 795 p~wnp~~e~QaigRvhRiGQ~k~V~V~rl 823 (869)
|.|++...+..+.---.+-..-||.+|++
T Consensus 163 PyY~k~sq~gl~~hf~~IA~a~PiilYNi 191 (360)
T 4dpp_A 163 PYYGKTSIEGLIAHFQSVLHMGPTIIYNV 191 (360)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 88887665554443333333348888875
No 319
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=20.20 E-value=2.3e+02 Score=31.64 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=57.5
Q ss_pred ccCcchHHHH-HHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCCCCCCCCEE
Q 002901 692 NFTSSKVSAL-LTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTV 770 (869)
Q Consensus 692 ~~~s~K~~~L-~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~~~~~~~~V 770 (869)
+..++|.-+. +-.+. . +.++||.+.....+.-....|...|++...++|+.+..++......+..+ .+.|
T Consensus 48 pTGsGKTl~~~lp~l~----~--~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~---~~~i 118 (523)
T 1oyw_A 48 PTGGGKSLCYQIPALL----L--NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG---QIRL 118 (523)
T ss_dssp SCHHHHHHHHHHHHHH----S--SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT---CCSE
T ss_pred CCCcHHHHHHHHHHHH----h--CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC---CCCE
Confidence 4457887533 22221 1 35899999999999888889999999999999999988888888887763 2367
Q ss_pred EEEecCC
Q 002901 771 LLASLKA 777 (869)
Q Consensus 771 lL~S~~a 777 (869)
+++|...
T Consensus 119 lv~Tpe~ 125 (523)
T 1oyw_A 119 LYIAPER 125 (523)
T ss_dssp EEECHHH
T ss_pred EEECHHH
Confidence 7776543
No 320
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.18 E-value=3.3e+02 Score=21.62 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhCC
Q 002901 699 SALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGN 762 (869)
Q Consensus 699 ~~L~~~L~~~~~~~~~~K~lVFsq~~~~ld~l~~~L~~~gi~~~rldG~~~~~~R~~~i~~F~~ 762 (869)
+.|-..|.+.+....+.|++|.......+|.-.+.-....|.+ |-.--+++++-...|+.|..
T Consensus 36 delkkyleefrkesqnikvlilvsndeeldkakelaqkmeidv-rtrkvtspdeakrwikefse 98 (110)
T 2kpo_A 36 DELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDV-RTRKVTSPDEAKRWIKEFSE 98 (110)
T ss_dssp HHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCE-EEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceee-eeeecCChHHHHHHHHHHhh
Confidence 5577788888877888999999999999998888777777764 44455678888899999987
No 321
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=20.07 E-value=3.5e+02 Score=22.60 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=32.6
Q ss_pred CeEEEEe-ccHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHh
Q 002901 715 TKSVVFS-QFRKMLILLEEPLQAAGFKLLRLDGSMN---AKKRAQVIEEF 760 (869)
Q Consensus 715 ~K~lVFs-q~~~~ld~l~~~L~~~gi~~~rldG~~~---~~~R~~~i~~F 760 (869)
.+++||+ .|-.....+...|+..|+.|..++=... ..+..+.+.++
T Consensus 19 ~~v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~ 68 (113)
T 3rhb_A 19 NTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERL 68 (113)
T ss_dssp SSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHH
Confidence 4688887 5667888999999999999888776542 23334445554
Done!