Query 002902
Match_columns 868
No_of_seqs 344 out of 1472
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 13:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 99.9 1.1E-19 2.4E-24 230.7 48.2 288 291-578 1240-1617(1930)
2 PF01576 Myosin_tail_1: Myosin 99.9 5.1E-23 1.1E-27 251.9 0.0 332 243-579 139-560 (859)
3 KOG0161 Myosin class II heavy 99.8 1.8E-15 3.8E-20 193.0 44.0 331 244-578 1521-1912(1930)
4 COG1196 Smc Chromosome segrega 99.6 1.4E-12 3.1E-17 165.8 42.2 387 150-553 559-1030(1163)
5 PF00038 Filament: Intermediat 99.6 5.9E-12 1.3E-16 138.3 40.0 270 241-516 17-312 (312)
6 KOG0977 Nuclear envelope prote 99.6 2.3E-13 5E-18 156.6 29.3 270 241-516 55-392 (546)
7 PF01576 Myosin_tail_1: Myosin 99.6 1.1E-16 2.4E-21 196.4 -1.6 329 243-575 462-851 (859)
8 PF00498 FHA: FHA domain; Int 99.5 2.2E-14 4.8E-19 122.6 7.9 67 105-185 1-68 (68)
9 TIGR02169 SMC_prok_A chromosom 99.5 1.7E-10 3.7E-15 146.2 45.6 162 187-358 609-785 (1164)
10 KOG1882 Transcriptional regula 99.4 1.2E-13 2.6E-18 142.4 6.7 128 55-187 150-278 (293)
11 KOG0996 Structural maintenance 99.4 1.4E-09 3E-14 131.7 35.1 181 175-363 693-896 (1293)
12 cd00060 FHA Forkhead associate 99.3 3.1E-11 6.8E-16 109.5 12.5 90 80-186 2-93 (102)
13 TIGR02168 SMC_prok_B chromosom 99.3 9.3E-08 2E-12 121.3 47.0 42 522-563 968-1013(1179)
14 TIGR03354 VI_FHA type VI secre 99.3 2.1E-11 4.7E-16 138.3 11.9 78 94-186 15-96 (396)
15 TIGR02169 SMC_prok_A chromosom 99.2 1.2E-06 2.7E-11 111.4 51.4 10 159-168 109-118 (1164)
16 PLN02927 antheraxanthin epoxid 99.2 9.4E-11 2E-15 140.4 10.6 94 76-188 531-638 (668)
17 TIGR02168 SMC_prok_B chromosom 99.1 1.7E-06 3.6E-11 110.0 48.6 29 244-272 672-700 (1179)
18 KOG0615 Serine/threonine prote 99.1 1.6E-10 3.4E-15 128.4 7.8 116 74-203 41-160 (475)
19 PRK02224 chromosome segregatio 99.1 4.8E-06 1E-10 104.0 48.2 22 242-263 279-300 (880)
20 KOG0964 Structural maintenance 99.1 6.4E-07 1.4E-11 107.4 37.7 173 158-351 575-768 (1200)
21 PRK02224 chromosome segregatio 99.1 8.1E-06 1.8E-10 102.0 48.3 7 26-32 24-30 (880)
22 PF07888 CALCOCO1: Calcium bin 99.0 0.00019 4.1E-09 84.1 54.8 35 471-505 369-403 (546)
23 COG1196 Smc Chromosome segrega 99.0 1.3E-05 2.9E-10 102.9 49.0 70 98-169 46-121 (1163)
24 KOG0612 Rho-associated, coiled 99.0 9E-06 1.9E-10 100.0 44.1 134 444-578 699-852 (1317)
25 COG1716 FOG: FHA domain [Signa 99.0 7.6E-10 1.7E-14 112.6 8.0 73 98-187 84-157 (191)
26 KOG0971 Microtubule-associated 99.0 9.7E-06 2.1E-10 96.7 41.1 283 289-579 269-591 (1243)
27 TIGR00606 rad50 rad50. This fa 98.9 4E-05 8.7E-10 99.7 48.5 65 295-359 798-864 (1311)
28 smart00240 FHA Forkhead associ 98.9 1.7E-09 3.7E-14 87.3 5.5 50 105-167 1-52 (52)
29 KOG0933 Structural maintenance 98.9 1.1E-05 2.4E-10 97.5 39.4 52 156-207 569-631 (1174)
30 PF00038 Filament: Intermediat 98.9 3.5E-05 7.7E-10 84.9 40.8 106 249-365 4-116 (312)
31 PF07888 CALCOCO1: Calcium bin 98.9 0.0005 1.1E-08 80.6 55.0 26 247-272 141-166 (546)
32 KOG1881 Anion exchanger adapto 98.9 4E-09 8.6E-14 123.2 9.2 91 102-201 176-267 (793)
33 TIGR00606 rad50 rad50. This fa 98.9 4.1E-05 8.8E-10 99.7 46.7 45 523-567 1079-1125(1311)
34 PRK03918 chromosome segregatio 98.9 0.00018 3.9E-09 89.9 49.9 9 125-133 81-89 (880)
35 KOG0977 Nuclear envelope prote 98.8 3.9E-05 8.5E-10 89.6 38.2 148 248-400 41-195 (546)
36 COG3456 Predicted component of 98.8 1.2E-08 2.5E-13 114.0 8.4 75 98-186 21-97 (430)
37 PRK03918 chromosome segregatio 98.8 0.00053 1.1E-08 85.8 49.6 30 534-563 523-552 (880)
38 KOG0976 Rho/Rac1-interacting s 98.7 0.00014 3.1E-09 86.0 39.2 77 417-493 232-311 (1265)
39 PF00261 Tropomyosin: Tropomyo 98.7 2.4E-05 5.2E-10 83.6 30.9 210 292-516 4-219 (237)
40 PF10174 Cast: RIM-binding pro 98.7 0.00058 1.3E-08 83.6 45.3 206 293-498 312-539 (775)
41 PF12128 DUF3584: Protein of u 98.7 0.00054 1.2E-08 88.7 47.7 28 244-271 471-498 (1201)
42 KOG1029 Endocytic adaptor prot 98.7 0.00016 3.5E-09 85.5 37.7 70 273-348 357-426 (1118)
43 PF12128 DUF3584: Protein of u 98.7 0.0011 2.3E-08 86.0 49.4 12 60-71 35-46 (1201)
44 KOG1029 Endocytic adaptor prot 98.7 0.00011 2.3E-09 87.0 35.5 164 355-524 381-554 (1118)
45 KOG0018 Structural maintenance 98.6 0.0002 4.4E-09 87.7 38.3 121 105-263 525-673 (1141)
46 KOG0976 Rho/Rac1-interacting s 98.6 0.0037 8.1E-08 74.5 44.9 22 801-826 908-929 (1265)
47 KOG4674 Uncharacterized conser 98.6 0.0028 6.1E-08 82.4 47.8 107 243-350 637-750 (1822)
48 PRK04778 septation ring format 98.6 0.0032 6.8E-08 75.6 46.1 33 254-286 124-156 (569)
49 PRK04863 mukB cell division pr 98.6 0.0033 7.1E-08 82.3 49.0 98 465-562 557-664 (1486)
50 KOG4673 Transcription factor T 98.6 0.0048 1E-07 72.8 44.7 65 506-570 860-924 (961)
51 PRK01156 chromosome segregatio 98.6 0.0043 9.4E-08 78.1 48.9 10 797-806 864-873 (895)
52 KOG0996 Structural maintenance 98.5 0.0022 4.8E-08 79.5 43.7 19 551-570 585-603 (1293)
53 KOG0250 DNA repair protein RAD 98.5 0.0045 9.9E-08 76.8 45.9 131 426-559 663-799 (1074)
54 KOG4643 Uncharacterized coiled 98.5 0.0085 1.8E-07 73.4 47.7 32 532-563 567-598 (1195)
55 PF10174 Cast: RIM-binding pro 98.5 0.0026 5.6E-08 78.1 43.8 122 247-368 292-422 (775)
56 PF00261 Tropomyosin: Tropomyo 98.5 0.00034 7.5E-09 74.8 31.6 60 437-496 168-227 (237)
57 PRK04863 mukB cell division pr 98.5 0.0054 1.2E-07 80.4 47.5 36 408-443 440-475 (1486)
58 PRK01156 chromosome segregatio 98.5 0.01 2.2E-07 74.9 49.1 30 301-330 414-443 (895)
59 PF15070 GOLGA2L5: Putative go 98.5 0.0035 7.6E-08 75.5 42.5 17 803-822 579-595 (617)
60 KOG0612 Rho-associated, coiled 98.5 0.0019 4.1E-08 80.3 40.5 223 292-514 490-741 (1317)
61 KOG4673 Transcription factor T 98.5 0.0089 1.9E-07 70.6 45.6 45 398-442 582-630 (961)
62 PF09726 Macoilin: Transmembra 98.4 0.00021 4.5E-09 87.0 31.8 92 242-345 418-509 (697)
63 PRK11637 AmiB activator; Provi 98.4 0.00054 1.2E-08 79.2 33.1 25 733-759 388-412 (428)
64 PF05701 WEMBL: Weak chloropla 98.4 0.014 3E-07 69.5 46.7 73 420-492 284-356 (522)
65 KOG0994 Extracellular matrix g 98.4 0.0014 3.1E-08 80.4 35.9 33 430-462 1604-1636(1758)
66 KOG0964 Structural maintenance 98.4 0.0043 9.4E-08 75.7 39.7 91 277-368 226-323 (1200)
67 PRK11637 AmiB activator; Provi 98.3 0.00095 2.1E-08 77.2 33.1 45 434-478 194-238 (428)
68 KOG4674 Uncharacterized conser 98.3 0.026 5.5E-07 74.0 47.6 278 240-522 49-354 (1822)
69 KOG0971 Microtubule-associated 98.3 0.0043 9.3E-08 75.0 37.7 86 253-361 228-313 (1243)
70 PF05701 WEMBL: Weak chloropla 98.3 0.019 4.2E-07 68.3 46.8 66 470-535 313-381 (522)
71 KOG0994 Extracellular matrix g 98.3 0.007 1.5E-07 74.7 39.4 33 469-501 1685-1717(1758)
72 PRK04778 septation ring format 98.3 0.022 4.7E-07 68.5 43.7 23 539-561 444-466 (569)
73 PHA02562 46 endonuclease subun 98.2 0.0016 3.4E-08 77.4 33.0 30 242-271 174-203 (562)
74 KOG0250 DNA repair protein RAD 98.2 0.01 2.2E-07 73.8 38.8 138 426-570 332-470 (1074)
75 KOG0933 Structural maintenance 98.2 0.037 8.1E-07 68.2 41.6 110 444-564 391-500 (1174)
76 TIGR03185 DNA_S_dndD DNA sulfu 98.2 0.019 4.2E-07 70.0 40.3 72 434-505 394-467 (650)
77 KOG0963 Transcription factor/C 98.2 0.03 6.5E-07 66.2 39.5 110 423-532 234-357 (629)
78 COG1340 Uncharacterized archae 98.1 0.023 5E-07 62.2 38.6 39 300-338 52-90 (294)
79 PF09755 DUF2046: Uncharacteri 98.1 0.026 5.7E-07 62.2 39.1 105 242-365 27-133 (310)
80 PF09730 BicD: Microtubule-ass 98.1 0.041 8.8E-07 67.1 41.1 110 242-356 34-146 (717)
81 KOG0995 Centromere-associated 98.1 0.052 1.1E-06 63.8 45.5 71 435-505 436-510 (581)
82 KOG1880 Nuclear inhibitor of p 98.1 4.1E-06 8.9E-11 89.9 5.2 87 98-201 33-120 (337)
83 PHA02562 46 endonuclease subun 98.0 0.015 3.2E-07 69.2 35.4 65 295-359 212-276 (562)
84 COG4942 Membrane-bound metallo 98.0 0.014 3E-07 66.8 32.7 64 443-506 180-243 (420)
85 PF05483 SCP-1: Synaptonemal c 98.0 0.077 1.7E-06 63.3 48.7 73 293-365 402-484 (786)
86 PRK10929 putative mechanosensi 98.0 0.076 1.6E-06 68.0 41.9 34 528-561 396-429 (1109)
87 COG5185 HEC1 Protein involved 98.0 0.063 1.4E-06 61.5 38.7 65 299-363 298-362 (622)
88 PF09726 Macoilin: Transmembra 98.0 0.011 2.4E-07 72.3 32.6 41 325-365 461-501 (697)
89 COG4942 Membrane-bound metallo 98.0 0.022 4.8E-07 65.2 32.7 55 445-506 196-250 (420)
90 PF06160 EzrA: Septation ring 97.9 0.1 2.3E-06 62.7 44.8 33 464-496 349-381 (560)
91 KOG0245 Kinesin-like protein [ 97.9 0.001 2.2E-08 81.5 22.1 86 96-201 470-557 (1221)
92 PF15070 GOLGA2L5: Putative go 97.9 0.14 2.9E-06 62.2 40.2 82 427-508 163-244 (617)
93 KOG0995 Centromere-associated 97.9 0.11 2.4E-06 61.1 45.5 10 502-511 525-534 (581)
94 PF05667 DUF812: Protein of un 97.8 0.09 1.9E-06 63.4 36.5 45 468-512 486-530 (594)
95 KOG4593 Mitotic checkpoint pro 97.8 0.19 4.1E-06 60.4 47.5 47 292-338 126-172 (716)
96 TIGR03185 DNA_S_dndD DNA sulfu 97.8 0.048 1E-06 66.6 33.9 42 297-338 210-251 (650)
97 PRK11281 hypothetical protein; 97.8 0.2 4.4E-06 64.3 40.2 34 528-561 420-453 (1113)
98 KOG0980 Actin-binding protein 97.8 0.23 5.1E-06 60.8 38.5 43 281-324 351-393 (980)
99 KOG0999 Microtubule-associated 97.7 0.17 3.7E-06 59.1 34.5 100 419-522 151-253 (772)
100 KOG0963 Transcription factor/C 97.7 0.22 4.8E-06 59.2 36.1 51 450-501 308-358 (629)
101 PF06705 SF-assemblin: SF-asse 97.7 0.12 2.7E-06 55.6 33.2 214 346-569 6-223 (247)
102 PF09755 DUF2046: Uncharacteri 97.7 0.15 3.3E-06 56.4 37.9 161 303-484 41-203 (310)
103 KOG0018 Structural maintenance 97.7 0.35 7.7E-06 60.5 40.6 121 243-363 161-287 (1141)
104 KOG0980 Actin-binding protein 97.6 0.22 4.8E-06 61.0 34.8 152 244-398 335-490 (980)
105 PF14662 CCDC155: Coiled-coil 97.6 0.12 2.7E-06 53.4 28.9 148 309-462 7-154 (193)
106 KOG0946 ER-Golgi vesicle-tethe 97.6 0.12 2.7E-06 62.6 32.2 90 426-515 808-899 (970)
107 PF06160 EzrA: Septation ring 97.6 0.34 7.4E-06 58.3 45.2 113 445-561 344-462 (560)
108 PF05483 SCP-1: Synaptonemal c 97.6 0.35 7.6E-06 58.0 48.1 46 304-349 336-381 (786)
109 COG0419 SbcC ATPase involved i 97.5 0.6 1.3E-05 59.4 50.0 7 48-54 36-42 (908)
110 COG3883 Uncharacterized protei 97.5 0.22 4.7E-06 54.2 30.2 52 428-479 166-217 (265)
111 KOG4643 Uncharacterized coiled 97.4 0.63 1.4E-05 57.9 42.8 44 294-337 306-349 (1195)
112 KOG0999 Microtubule-associated 97.4 0.51 1.1E-05 55.3 33.4 103 402-504 106-211 (772)
113 PF14915 CCDC144C: CCDC144C pr 97.4 0.34 7.4E-06 53.2 41.4 98 416-520 171-268 (305)
114 COG1579 Zn-ribbon protein, pos 97.4 0.092 2E-06 56.4 24.8 40 298-337 40-79 (239)
115 PF09730 BicD: Microtubule-ass 97.3 0.75 1.6E-05 56.5 44.0 51 435-485 269-319 (717)
116 TIGR02680 conserved hypothetic 97.3 0.47 1E-05 62.8 36.0 21 679-699 1137-1157(1353)
117 COG5185 HEC1 Protein involved 97.3 0.56 1.2E-05 54.1 37.0 63 294-356 307-369 (622)
118 PRK09039 hypothetical protein; 97.2 0.074 1.6E-06 60.2 24.1 9 475-483 192-200 (343)
119 COG1579 Zn-ribbon protein, pos 97.2 0.13 2.7E-06 55.4 23.9 22 540-561 153-174 (239)
120 PF15619 Lebercilin: Ciliary p 97.2 0.42 9.1E-06 50.0 27.4 30 427-456 121-150 (194)
121 KOG2129 Uncharacterized conser 97.1 0.79 1.7E-05 52.2 31.8 23 242-264 50-72 (552)
122 PF09728 Taxilin: Myosin-like 97.1 0.72 1.6E-05 51.6 42.3 53 307-359 47-99 (309)
123 COG4372 Uncharacterized protei 97.1 0.81 1.8E-05 51.7 33.0 80 251-331 76-158 (499)
124 PRK09039 hypothetical protein; 97.0 0.13 2.8E-06 58.3 23.2 47 409-455 157-204 (343)
125 PF05010 TACC: Transforming ac 97.0 0.68 1.5E-05 48.9 30.3 47 457-503 159-205 (207)
126 PF06008 Laminin_I: Laminin Do 97.0 0.82 1.8E-05 49.7 33.9 31 241-271 16-46 (264)
127 KOG0962 DNA repair protein RAD 96.9 2.7 5.8E-05 54.4 42.6 33 473-505 1041-1073(1294)
128 PF05557 MAD: Mitotic checkpoi 96.9 0.00062 1.3E-08 83.8 3.2 14 548-561 508-521 (722)
129 KOG0946 ER-Golgi vesicle-tethe 96.8 1.1 2.4E-05 54.8 29.2 65 262-334 652-716 (970)
130 PF12718 Tropomyosin_1: Tropom 96.8 0.27 5.8E-06 49.0 20.8 28 434-461 104-131 (143)
131 KOG0978 E3 ubiquitin ligase in 96.8 2.2 4.8E-05 52.2 43.4 8 404-411 462-469 (698)
132 PF05911 DUF869: Plant protein 96.8 0.77 1.7E-05 57.0 28.7 83 426-508 633-715 (769)
133 KOG4302 Microtubule-associated 96.8 0.85 1.8E-05 55.4 28.2 27 532-558 360-386 (660)
134 PF05622 HOOK: HOOK protein; 96.8 0.00035 7.6E-09 85.8 0.0 10 103-112 98-107 (713)
135 COG4372 Uncharacterized protei 96.7 1.5 3.3E-05 49.6 34.5 11 720-730 462-472 (499)
136 PF05557 MAD: Mitotic checkpoi 96.7 0.0068 1.5E-07 74.8 10.8 74 425-498 462-535 (722)
137 PF05622 HOOK: HOOK protein; 96.7 0.00039 8.5E-09 85.4 0.0 107 243-352 247-353 (713)
138 KOG0978 E3 ubiquitin ligase in 96.7 2.6 5.7E-05 51.6 44.4 37 242-278 265-301 (698)
139 KOG1853 LIS1-interacting prote 96.7 0.82 1.8E-05 49.0 23.9 129 304-447 28-156 (333)
140 PRK10246 exonuclease subunit S 96.6 4.1 8.8E-05 52.9 46.4 45 517-561 834-878 (1047)
141 KOG2129 Uncharacterized conser 96.5 2.2 4.8E-05 48.7 32.0 27 546-572 309-336 (552)
142 KOG1003 Actin filament-coating 96.5 1.3 2.9E-05 46.0 27.7 49 442-490 141-189 (205)
143 TIGR01005 eps_transp_fam exopo 96.4 0.22 4.7E-06 61.9 21.1 147 424-570 237-396 (754)
144 KOG0962 DNA repair protein RAD 96.3 5.8 0.00013 51.5 43.8 33 537-569 1082-1114(1294)
145 TIGR01843 type_I_hlyD type I s 96.3 1.1 2.5E-05 50.9 25.0 17 243-259 82-98 (423)
146 TIGR02680 conserved hypothetic 96.3 6.8 0.00015 52.2 44.1 47 296-342 276-322 (1353)
147 PF08317 Spc7: Spc7 kinetochor 96.3 2.6 5.7E-05 47.4 27.9 35 477-511 234-268 (325)
148 PF15619 Lebercilin: Ciliary p 96.3 1.8 3.9E-05 45.4 25.6 22 243-264 13-34 (194)
149 KOG1937 Uncharacterized conser 96.3 3.3 7.1E-05 47.9 35.2 35 445-479 389-423 (521)
150 PRK11281 hypothetical protein; 96.2 6.5 0.00014 51.1 34.1 9 711-719 599-607 (1113)
151 PF04849 HAP1_N: HAP1 N-termin 96.2 2.8 6.1E-05 46.7 26.6 37 292-328 86-122 (306)
152 COG4477 EzrA Negative regulato 96.2 3.9 8.5E-05 48.3 43.7 28 474-501 383-410 (570)
153 PF13514 AAA_27: AAA domain 96.2 7.2 0.00016 50.9 42.9 15 624-638 1080-1094(1111)
154 TIGR03007 pepcterm_ChnLen poly 96.1 0.45 9.7E-06 56.1 20.8 19 381-399 254-272 (498)
155 KOG0979 Structural maintenance 96.1 3.6 7.9E-05 51.7 28.5 11 610-620 493-503 (1072)
156 TIGR01005 eps_transp_fam exopo 96.1 0.86 1.9E-05 56.7 24.2 24 293-316 198-221 (754)
157 KOG4593 Mitotic checkpoint pro 96.1 5.3 0.00012 48.6 45.4 63 427-489 429-491 (716)
158 PF06705 SF-assemblin: SF-asse 96.0 2.9 6.3E-05 45.1 37.3 71 320-390 66-137 (247)
159 TIGR00634 recN DNA repair prot 96.0 3.3 7.1E-05 50.0 27.6 7 805-811 539-545 (563)
160 TIGR03007 pepcterm_ChnLen poly 96.0 0.44 9.6E-06 56.2 19.9 58 513-570 318-375 (498)
161 PF08317 Spc7: Spc7 kinetochor 96.0 3.8 8.2E-05 46.1 29.5 29 297-325 69-97 (325)
162 KOG0249 LAR-interacting protei 96.0 1.1 2.4E-05 54.0 22.4 33 475-507 218-250 (916)
163 PF10473 CENP-F_leu_zip: Leuci 95.9 0.59 1.3E-05 46.5 17.1 18 439-456 18-35 (140)
164 KOG0249 LAR-interacting protei 95.9 3.6 7.8E-05 50.0 25.9 91 307-398 95-187 (916)
165 PF14662 CCDC155: Coiled-coil 95.8 3 6.5E-05 43.5 28.4 33 444-476 157-189 (193)
166 PF09787 Golgin_A5: Golgin sub 95.7 6.4 0.00014 47.1 35.8 28 248-275 108-135 (511)
167 KOG4809 Rab6 GTPase-interactin 95.6 6.6 0.00014 46.5 36.4 70 279-349 336-405 (654)
168 PRK10929 putative mechanosensi 95.6 11 0.00024 49.0 35.9 9 712-720 579-587 (1109)
169 KOG0243 Kinesin-like protein [ 95.6 10 0.00022 48.4 40.8 106 258-363 406-515 (1041)
170 PF04849 HAP1_N: HAP1 N-termin 95.6 5.1 0.00011 44.7 28.7 56 298-353 64-119 (306)
171 KOG2293 Daxx-interacting prote 95.6 0.024 5.2E-07 65.8 6.7 83 98-200 443-531 (547)
172 PRK10869 recombination and rep 95.5 8.1 0.00018 46.7 29.4 41 403-443 296-336 (553)
173 KOG0979 Structural maintenance 95.5 10 0.00023 47.9 38.7 13 540-552 910-922 (1072)
174 COG4913 Uncharacterized protei 95.5 8.8 0.00019 46.9 30.6 110 242-351 616-732 (1104)
175 TIGR00634 recN DNA repair prot 95.4 8.9 0.00019 46.4 29.0 38 404-441 302-339 (563)
176 TIGR01843 type_I_hlyD type I s 95.3 5.5 0.00012 45.4 25.1 18 294-311 79-96 (423)
177 TIGR02500 type_III_yscD type I 95.3 0.058 1.3E-06 62.4 8.9 75 93-185 10-87 (410)
178 PF05911 DUF869: Plant protein 95.2 12 0.00027 46.8 32.6 159 254-419 43-206 (769)
179 PF13514 AAA_27: AAA domain 95.2 16 0.00034 47.9 45.1 36 470-505 893-928 (1111)
180 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.1 3.7 8E-05 40.2 19.9 42 320-361 6-47 (132)
181 KOG1892 Actin filament-binding 95.1 0.074 1.6E-06 65.1 9.0 91 79-187 356-448 (1629)
182 COG4477 EzrA Negative regulato 95.1 10 0.00022 45.1 43.6 9 555-563 518-526 (570)
183 KOG1103 Predicted coiled-coil 95.0 7.7 0.00017 43.6 27.1 114 428-541 150-281 (561)
184 smart00787 Spc7 Spc7 kinetocho 94.8 9 0.0002 43.1 27.2 7 392-398 136-142 (312)
185 PF15254 CCDC14: Coiled-coil d 94.8 7.1 0.00015 48.0 24.1 49 483-531 465-513 (861)
186 TIGR03017 EpsF chain length de 94.7 4.6 0.0001 46.8 22.3 103 468-570 256-362 (444)
187 PF05010 TACC: Transforming ac 94.7 7.1 0.00015 41.4 31.3 49 310-358 62-110 (207)
188 TIGR03017 EpsF chain length de 94.7 4.6 9.9E-05 46.9 22.2 29 244-272 173-201 (444)
189 PF10481 CENP-F_N: Cenp-F N-te 94.6 2.2 4.8E-05 46.4 17.7 37 391-427 6-42 (307)
190 PF15066 CAGE1: Cancer-associa 94.5 12 0.00027 43.6 29.7 68 294-365 343-410 (527)
191 PF15066 CAGE1: Cancer-associa 94.5 12 0.00027 43.6 29.5 96 292-388 327-425 (527)
192 KOG4360 Uncharacterized coiled 94.5 13 0.00029 43.8 25.3 77 403-479 205-281 (596)
193 PF07111 HCR: Alpha helical co 94.5 16 0.00035 44.7 48.1 12 571-582 645-656 (739)
194 PF09304 Cortex-I_coil: Cortex 94.5 2.6 5.6E-05 40.0 15.6 66 424-489 16-81 (107)
195 PF08614 ATG16: Autophagy prot 94.4 0.56 1.2E-05 48.8 12.7 84 422-505 79-162 (194)
196 KOG4807 F-actin binding protei 94.4 12 0.00025 42.8 28.5 39 242-280 291-329 (593)
197 PF10168 Nup88: Nuclear pore c 94.4 2.5 5.4E-05 52.5 20.0 41 415-455 630-670 (717)
198 COG4026 Uncharacterized protei 94.3 1.3 2.8E-05 46.9 14.6 66 298-363 137-202 (290)
199 KOG4807 F-actin binding protei 94.3 13 0.00027 42.5 34.4 125 351-479 351-476 (593)
200 PF12325 TMF_TATA_bd: TATA ele 94.1 2.1 4.5E-05 41.6 14.7 30 243-272 24-53 (120)
201 COG2433 Uncharacterized conser 94.0 3.4 7.3E-05 49.5 18.9 73 424-500 436-508 (652)
202 KOG4809 Rab6 GTPase-interactin 94.0 17 0.00037 43.2 36.9 26 538-563 579-604 (654)
203 TIGR01663 PNK-3'Pase polynucle 94.0 0.16 3.5E-06 60.5 8.5 86 96-199 25-110 (526)
204 TIGR03319 YmdA_YtgF conserved 93.9 12 0.00026 44.9 23.9 11 733-743 413-423 (514)
205 PF09304 Cortex-I_coil: Cortex 93.9 4.7 0.0001 38.3 16.0 67 299-365 12-78 (107)
206 PLN03229 acetyl-coenzyme A car 93.8 22 0.00047 44.1 25.7 12 145-156 241-252 (762)
207 PF14073 Cep57_CLD: Centrosome 93.8 9.4 0.0002 39.5 23.3 46 428-473 124-169 (178)
208 PF05384 DegS: Sensor protein 93.8 8.8 0.00019 39.1 19.5 118 242-363 27-151 (159)
209 PF09728 Taxilin: Myosin-like 93.8 14 0.00031 41.5 44.0 60 435-494 213-272 (309)
210 KOG1899 LAR transmembrane tyro 93.7 11 0.00025 45.2 22.2 29 233-261 102-130 (861)
211 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.6 7.7 0.00017 38.0 19.7 8 510-517 96-103 (132)
212 PF08614 ATG16: Autophagy prot 93.6 1.2 2.6E-05 46.3 13.3 56 298-353 104-159 (194)
213 PRK10698 phage shock protein P 93.5 12 0.00027 39.9 22.0 88 471-561 97-184 (222)
214 PF00769 ERM: Ezrin/radixin/mo 93.5 6.5 0.00014 42.7 18.9 82 436-517 45-126 (246)
215 PRK10869 recombination and rep 93.5 23 0.0005 42.9 28.9 24 538-561 361-385 (553)
216 PF04012 PspA_IM30: PspA/IM30 93.4 12 0.00026 39.5 25.0 7 499-505 194-200 (221)
217 PF13851 GAS: Growth-arrest sp 93.4 12 0.00026 39.4 26.5 28 465-492 99-126 (201)
218 PF04912 Dynamitin: Dynamitin 93.4 19 0.0004 41.6 26.5 38 430-467 328-365 (388)
219 PF00769 ERM: Ezrin/radixin/mo 93.3 6.2 0.00014 42.8 18.5 55 440-494 70-124 (246)
220 PF12325 TMF_TATA_bd: TATA ele 93.3 6.2 0.00013 38.4 16.5 98 239-359 13-110 (120)
221 PF15450 DUF4631: Domain of un 93.2 23 0.0005 42.1 44.9 35 553-588 451-485 (531)
222 KOG1853 LIS1-interacting prote 92.9 16 0.00036 39.5 23.1 19 506-524 131-149 (333)
223 TIGR02977 phageshock_pspA phag 92.8 15 0.00033 39.0 25.2 40 426-465 101-140 (219)
224 COG2433 Uncharacterized conser 92.8 7.5 0.00016 46.7 19.2 10 122-131 194-203 (652)
225 KOG0241 Kinesin-like protein [ 92.8 2.2 4.7E-05 53.1 15.0 69 102-186 466-534 (1714)
226 KOG0982 Centrosomal protein Nu 92.8 23 0.00051 41.0 30.7 17 427-443 377-393 (502)
227 PF13851 GAS: Growth-arrest sp 92.7 15 0.00032 38.7 24.0 16 242-257 27-42 (201)
228 PF10168 Nup88: Nuclear pore c 92.7 27 0.00058 43.7 24.9 23 179-202 366-388 (717)
229 TIGR01000 bacteriocin_acc bact 92.7 25 0.00055 41.3 25.4 28 458-485 290-317 (457)
230 COG1842 PspA Phage shock prote 92.6 17 0.00037 39.0 22.3 39 472-510 91-129 (225)
231 PF11559 ADIP: Afadin- and alp 92.5 11 0.00025 37.4 17.8 18 508-525 129-146 (151)
232 PF11559 ADIP: Afadin- and alp 92.4 9.3 0.0002 38.0 17.0 20 421-440 63-82 (151)
233 KOG1850 Myosin-like coiled-coi 92.4 22 0.00048 39.8 38.7 195 317-531 109-311 (391)
234 PRK00106 hypothetical protein; 92.3 32 0.0007 41.5 26.7 10 733-742 434-443 (535)
235 PF04156 IncA: IncA protein; 92.3 9.4 0.0002 39.2 17.5 28 324-351 123-150 (191)
236 PF06008 Laminin_I: Laminin Do 92.2 20 0.00043 39.0 33.5 10 255-264 23-32 (264)
237 PF15397 DUF4618: Domain of un 92.2 21 0.00045 39.2 31.5 39 312-350 69-107 (258)
238 PF09789 DUF2353: Uncharacteri 92.2 24 0.00052 39.8 31.0 101 292-395 82-182 (319)
239 PLN03188 kinesin-12 family pro 92.0 51 0.0011 43.3 26.2 176 252-433 1068-1252(1320)
240 PRK10361 DNA recombination pro 92.0 32 0.0007 40.9 26.5 18 553-570 390-407 (475)
241 PRK12704 phosphodiesterase; Pr 91.7 37 0.00081 40.9 25.3 15 729-743 414-429 (520)
242 KOG1899 LAR transmembrane tyro 91.7 29 0.00063 42.0 21.9 32 516-547 278-309 (861)
243 COG3096 MukB Uncharacterized p 91.6 43 0.00092 41.4 39.7 59 305-363 350-408 (1480)
244 PF10186 Atg14: UV radiation r 91.5 21 0.00046 38.7 20.2 17 469-485 66-82 (302)
245 PF14073 Cep57_CLD: Centrosome 91.5 19 0.00042 37.3 20.6 32 241-272 3-34 (178)
246 PF13870 DUF4201: Domain of un 91.5 18 0.00039 37.0 19.1 33 240-272 40-72 (177)
247 PF04156 IncA: IncA protein; 91.5 12 0.00027 38.4 17.3 59 299-357 91-149 (191)
248 COG0497 RecN ATPase involved i 91.4 40 0.00087 40.8 28.8 42 403-444 297-338 (557)
249 PRK10884 SH3 domain-containing 91.2 2.1 4.5E-05 45.3 11.3 11 175-185 49-59 (206)
250 PF07111 HCR: Alpha helical co 91.1 47 0.001 41.0 47.2 144 435-578 518-667 (739)
251 COG1842 PspA Phage shock prote 90.7 27 0.00058 37.6 24.9 7 499-505 196-202 (225)
252 PF12795 MscS_porin: Mechanose 90.7 27 0.00058 37.5 22.6 59 426-484 80-138 (240)
253 PF06785 UPF0242: Uncharacteri 90.5 35 0.00075 38.5 20.6 83 421-503 103-185 (401)
254 PF05266 DUF724: Protein of un 90.4 15 0.00033 38.5 16.6 92 426-517 88-182 (190)
255 PRK10246 exonuclease subunit S 90.3 71 0.0015 41.8 48.8 9 803-811 1016-1024(1047)
256 PF06818 Fez1: Fez1; InterPro 90.2 28 0.0006 36.9 22.0 23 376-398 133-155 (202)
257 PF10498 IFT57: Intra-flagella 90.2 16 0.00034 42.0 17.9 80 315-396 271-350 (359)
258 PLN02939 transferase, transfer 90.0 70 0.0015 41.2 32.3 26 522-547 365-390 (977)
259 PF10481 CENP-F_N: Cenp-F N-te 89.7 16 0.00034 40.2 16.2 112 242-365 18-129 (307)
260 PF09731 Mitofilin: Mitochondr 89.7 56 0.0012 39.6 27.9 33 449-484 364-396 (582)
261 KOG4438 Centromere-associated 89.6 47 0.001 38.7 33.9 16 403-418 241-256 (446)
262 PF09787 Golgin_A5: Golgin sub 89.6 54 0.0012 39.3 36.0 21 314-334 184-204 (511)
263 PF08826 DMPK_coil: DMPK coile 89.4 5.2 0.00011 34.4 10.1 58 301-358 2-59 (61)
264 PF14992 TMCO5: TMCO5 family 89.3 26 0.00057 38.7 18.0 50 426-475 111-160 (280)
265 KOG3647 Predicted coiled-coil 89.1 10 0.00022 41.3 14.3 75 484-558 144-229 (338)
266 KOG4302 Microtubule-associated 88.8 70 0.0015 39.6 37.1 22 293-314 65-86 (660)
267 PF10498 IFT57: Intra-flagella 88.8 22 0.00048 40.8 17.8 33 411-443 253-285 (359)
268 PF10146 zf-C4H2: Zinc finger- 88.7 19 0.00042 38.8 16.3 19 323-341 59-77 (230)
269 PF06785 UPF0242: Uncharacteri 88.7 48 0.001 37.5 20.0 87 419-505 87-173 (401)
270 TIGR01000 bacteriocin_acc bact 88.4 59 0.0013 38.2 27.5 28 292-319 93-120 (457)
271 COG0497 RecN ATPase involved i 87.8 74 0.0016 38.6 28.5 66 445-514 297-362 (557)
272 PF11932 DUF3450: Protein of u 87.5 45 0.00097 36.1 18.6 36 315-350 68-103 (251)
273 PF15254 CCDC14: Coiled-coil d 87.4 87 0.0019 39.1 26.2 53 464-516 513-565 (861)
274 KOG0804 Cytoplasmic Zn-finger 87.4 40 0.00086 39.5 18.4 34 428-461 358-391 (493)
275 PRK10698 phage shock protein P 87.4 45 0.00097 35.7 26.8 45 425-469 100-144 (222)
276 KOG2072 Translation initiation 87.3 92 0.002 39.2 39.6 27 426-452 672-698 (988)
277 PRK10884 SH3 domain-containing 87.2 12 0.00025 39.8 13.4 14 426-439 95-108 (206)
278 KOG4438 Centromere-associated 87.0 68 0.0015 37.4 38.0 70 268-338 125-194 (446)
279 KOG0982 Centrosomal protein Nu 86.9 69 0.0015 37.4 29.3 47 294-340 220-266 (502)
280 PF13166 AAA_13: AAA domain 86.8 90 0.002 38.6 29.3 33 453-485 425-457 (712)
281 PF15450 DUF4631: Domain of un 86.7 79 0.0017 37.8 45.6 33 469-501 408-440 (531)
282 KOG4787 Uncharacterized conser 86.6 83 0.0018 38.0 25.7 34 292-325 335-368 (852)
283 PLN02939 transferase, transfer 86.4 1.1E+02 0.0025 39.4 31.5 19 438-456 324-342 (977)
284 PF12777 MT: Microtubule-bindi 86.3 66 0.0014 36.6 25.9 56 450-505 219-274 (344)
285 PF03148 Tektin: Tektin family 85.9 74 0.0016 36.8 43.1 49 448-496 247-295 (384)
286 KOG1265 Phospholipase C [Lipid 85.8 1.1E+02 0.0024 38.8 23.0 14 277-290 949-962 (1189)
287 KOG4360 Uncharacterized coiled 85.8 59 0.0013 38.7 18.9 17 646-662 560-576 (596)
288 TIGR02977 phageshock_pspA phag 85.7 53 0.0011 34.9 24.8 13 295-307 12-24 (219)
289 PF14197 Cep57_CLD_2: Centroso 85.7 11 0.00024 33.1 10.3 60 294-353 3-62 (69)
290 PF15397 DUF4618: Domain of un 85.5 62 0.0013 35.6 31.8 7 283-289 29-35 (258)
291 PF12795 MscS_porin: Mechanose 84.9 60 0.0013 34.9 24.0 55 293-347 82-136 (240)
292 KOG0163 Myosin class VI heavy 84.8 1.2E+02 0.0025 38.0 24.6 27 635-661 1164-1190(1259)
293 PF10205 KLRAQ: Predicted coil 84.8 16 0.00035 34.6 11.4 60 445-504 12-71 (102)
294 PF10146 zf-C4H2: Zinc finger- 84.7 44 0.00095 36.1 16.4 12 279-290 37-48 (230)
295 KOG2072 Translation initiation 84.5 1.2E+02 0.0027 38.1 44.3 45 470-516 769-813 (988)
296 KOG0579 Ste20-like serine/thre 84.3 1.2E+02 0.0025 37.7 44.0 28 269-296 829-856 (1187)
297 KOG0992 Uncharacterized conser 84.1 1E+02 0.0022 36.8 34.1 255 241-510 164-419 (613)
298 PF15372 DUF4600: Domain of un 83.9 21 0.00046 35.1 12.3 101 456-560 5-110 (129)
299 PF06428 Sec2p: GDP/GTP exchan 83.5 8.1 0.00018 36.4 9.0 62 304-365 2-64 (100)
300 KOG0239 Kinesin (KAR3 subfamil 83.2 1.1E+02 0.0024 38.2 20.9 35 315-349 173-207 (670)
301 KOG0239 Kinesin (KAR3 subfamil 82.9 1.4E+02 0.0029 37.4 23.4 18 641-658 395-412 (670)
302 TIGR01010 BexC_CtrB_KpsE polys 82.8 67 0.0015 36.5 18.0 14 187-200 27-40 (362)
303 COG4026 Uncharacterized protei 82.6 38 0.00083 36.2 14.3 31 230-261 94-124 (290)
304 KOG0993 Rab5 GTPase effector R 82.3 1.1E+02 0.0023 35.7 35.3 31 536-569 430-460 (542)
305 KOG0243 Kinesin-like protein [ 82.3 1.7E+02 0.0036 38.1 44.7 21 244-264 406-426 (1041)
306 PF05384 DegS: Sensor protein 82.2 63 0.0014 33.0 23.8 9 428-436 137-145 (159)
307 TIGR03752 conj_TIGR03752 integ 81.8 15 0.00033 43.3 12.2 37 242-278 59-95 (472)
308 COG4717 Uncharacterized conser 81.4 1.6E+02 0.0036 37.4 36.0 34 472-505 773-806 (984)
309 PF04912 Dynamitin: Dynamitin 81.4 1.1E+02 0.0024 35.3 25.1 51 506-556 337-388 (388)
310 TIGR01010 BexC_CtrB_KpsE polys 81.3 44 0.00095 38.0 15.8 21 294-314 175-195 (362)
311 COG3096 MukB Uncharacterized p 81.3 1.5E+02 0.0033 36.9 38.7 48 294-341 353-400 (1480)
312 PF10234 Cluap1: Clusterin-ass 81.0 95 0.0021 34.3 19.7 86 420-505 165-257 (267)
313 KOG1103 Predicted coiled-coil 80.6 1.1E+02 0.0024 34.8 23.9 35 317-351 139-173 (561)
314 KOG1924 RhoA GTPase effector D 80.6 3.3 7.1E-05 50.7 6.5 15 118-132 634-648 (1102)
315 PF07058 Myosin_HC-like: Myosi 80.6 1E+02 0.0023 34.5 17.3 70 245-314 3-84 (351)
316 COG1382 GimC Prefoldin, chaper 80.4 60 0.0013 31.7 14.1 34 305-338 15-48 (119)
317 PF08581 Tup_N: Tup N-terminal 80.2 42 0.00091 30.4 11.9 41 482-522 34-74 (79)
318 PF04065 Not3: Not1 N-terminal 80.1 94 0.002 33.7 18.8 64 388-451 121-190 (233)
319 PF10212 TTKRSYEDQ: Predicted 80.1 1.4E+02 0.0031 35.8 23.3 88 445-532 420-507 (518)
320 PF11932 DUF3450: Protein of u 79.8 95 0.002 33.6 20.1 7 568-574 169-175 (251)
321 PF05335 DUF745: Protein of un 79.6 85 0.0019 32.9 21.5 95 421-515 78-172 (188)
322 PRK12705 hypothetical protein; 79.6 1.5E+02 0.0033 35.8 20.5 128 383-516 39-172 (508)
323 KOG0288 WD40 repeat protein Ti 79.4 94 0.002 36.2 17.0 57 431-487 13-69 (459)
324 PF13863 DUF4200: Domain of un 78.8 62 0.0014 30.9 17.1 58 293-350 50-107 (126)
325 PF04102 SlyX: SlyX; InterPro 78.3 11 0.00024 32.9 7.6 49 295-343 3-51 (69)
326 PF04899 MbeD_MobD: MbeD/MobD 78.3 31 0.00067 30.5 10.2 61 283-343 8-68 (70)
327 PF08647 BRE1: BRE1 E3 ubiquit 78.1 59 0.0013 30.2 13.0 54 458-511 16-69 (96)
328 KOG0163 Myosin class VI heavy 77.9 2E+02 0.0043 36.2 24.0 31 329-359 894-925 (1259)
329 PRK04406 hypothetical protein; 77.8 18 0.00038 32.4 8.8 34 297-330 12-45 (75)
330 PRK04406 hypothetical protein; 77.6 17 0.00038 32.4 8.6 43 321-363 8-50 (75)
331 KOG2264 Exostosin EXT1L [Signa 77.5 16 0.00034 43.7 10.5 56 310-365 93-148 (907)
332 KOG1962 B-cell receptor-associ 77.2 39 0.00084 36.2 12.5 15 242-256 114-128 (216)
333 PF09744 Jnk-SapK_ap_N: JNK_SA 77.1 67 0.0015 32.8 13.8 99 461-559 38-143 (158)
334 KOG1924 RhoA GTPase effector D 77.1 4 8.6E-05 50.1 5.8 31 31-61 538-568 (1102)
335 KOG3647 Predicted coiled-coil 76.9 1.1E+02 0.0024 33.7 15.8 82 475-564 114-203 (338)
336 PRK11519 tyrosine kinase; Prov 76.9 1.5E+02 0.0032 37.2 19.7 52 464-519 344-395 (719)
337 PF07106 TBPIP: Tat binding pr 76.9 25 0.00054 35.7 10.9 19 343-361 114-132 (169)
338 KOG1937 Uncharacterized conser 76.8 1.6E+02 0.0036 34.7 35.5 7 193-199 205-211 (521)
339 PRK00295 hypothetical protein; 76.8 17 0.00037 31.8 8.3 39 298-336 7-45 (68)
340 PF15035 Rootletin: Ciliary ro 76.7 1E+02 0.0022 32.2 19.3 30 450-479 132-161 (182)
341 PF03915 AIP3: Actin interacti 76.6 1.7E+02 0.0036 34.6 19.1 35 149-188 41-75 (424)
342 PF02050 FliJ: Flagellar FliJ 76.0 64 0.0014 29.6 17.0 6 474-479 60-65 (123)
343 PF09738 DUF2051: Double stran 76.0 1.4E+02 0.0031 33.6 21.2 22 446-467 277-298 (302)
344 PRK09841 cryptic autophosphory 75.8 65 0.0014 40.3 16.2 38 416-453 259-296 (726)
345 KOG0288 WD40 repeat protein Ti 75.7 1.2E+02 0.0026 35.4 16.5 58 436-493 11-68 (459)
346 PF15290 Syntaphilin: Golgi-lo 75.6 1.2E+02 0.0026 33.7 15.8 98 454-561 70-167 (305)
347 PF04871 Uso1_p115_C: Uso1 / p 75.5 89 0.0019 31.0 15.1 25 486-510 83-107 (136)
348 KOG0240 Kinesin (SMY1 subfamil 75.4 2E+02 0.0043 35.0 25.8 33 122-155 205-237 (607)
349 KOG2891 Surface glycoprotein [ 75.3 1.4E+02 0.003 33.1 24.9 22 178-203 148-169 (445)
350 PRK06231 F0F1 ATP synthase sub 75.1 1.1E+02 0.0024 32.3 15.5 23 302-324 85-107 (205)
351 PRK10476 multidrug resistance 74.9 1.5E+02 0.0033 33.3 17.6 12 550-561 190-201 (346)
352 KOG4572 Predicted DNA-binding 74.9 2.4E+02 0.0052 35.7 39.0 30 295-324 1001-1030(1424)
353 PF05335 DUF745: Protein of un 74.8 1.2E+02 0.0025 32.0 17.9 85 433-517 62-146 (188)
354 PRK00736 hypothetical protein; 74.7 19 0.00041 31.5 8.0 40 298-337 7-46 (68)
355 PRK10476 multidrug resistance 74.5 1.3E+02 0.0029 33.8 17.0 6 628-633 263-268 (346)
356 PRK04325 hypothetical protein; 74.4 19 0.00041 32.0 8.1 36 298-333 11-46 (74)
357 KOG4403 Cell surface glycoprot 74.2 1.9E+02 0.004 34.1 22.3 27 499-525 395-421 (575)
358 PF03999 MAP65_ASE1: Microtubu 74.1 3.2 6.9E-05 50.8 4.2 14 537-550 334-347 (619)
359 PRK09841 cryptic autophosphory 74.1 1.8E+02 0.0039 36.5 19.4 67 448-518 328-394 (726)
360 PF14988 DUF4515: Domain of un 73.9 1.3E+02 0.0028 32.0 27.2 12 294-305 45-56 (206)
361 PF07321 YscO: Type III secret 73.9 1.1E+02 0.0023 31.2 21.1 79 481-563 68-146 (152)
362 TIGR02971 heterocyst_DevB ABC 73.9 1.5E+02 0.0033 32.9 18.8 11 551-561 187-197 (327)
363 KOG2685 Cystoskeletal protein 73.7 1.9E+02 0.0041 33.9 35.9 18 488-505 352-369 (421)
364 TIGR01069 mutS2 MutS2 family p 73.5 96 0.0021 39.3 16.9 6 647-652 728-733 (771)
365 COG3206 GumC Uncharacterized p 73.5 1.9E+02 0.0042 34.0 26.8 23 325-347 240-262 (458)
366 PF10234 Cluap1: Clusterin-ass 73.5 1.2E+02 0.0026 33.6 15.5 10 552-561 248-257 (267)
367 PRK00295 hypothetical protein; 73.4 21 0.00046 31.2 8.0 40 323-362 4-43 (68)
368 TIGR01069 mutS2 MutS2 family p 73.4 66 0.0014 40.7 15.4 15 244-258 224-238 (771)
369 PF07889 DUF1664: Protein of u 73.3 98 0.0021 30.5 13.3 28 244-271 38-65 (126)
370 PF14197 Cep57_CLD_2: Centroso 73.2 46 0.00099 29.3 10.0 63 301-363 3-65 (69)
371 PRK00409 recombination and DNA 73.1 1E+02 0.0023 39.0 17.0 9 194-202 371-379 (782)
372 PF15290 Syntaphilin: Golgi-lo 73.0 1.1E+02 0.0024 33.9 14.9 21 341-361 120-140 (305)
373 KOG2264 Exostosin EXT1L [Signa 73.0 24 0.00053 42.1 10.5 51 465-515 99-149 (907)
374 KOG4403 Cell surface glycoprot 72.6 2E+02 0.0044 33.8 22.3 20 347-366 254-273 (575)
375 TIGR02338 gimC_beta prefoldin, 72.6 80 0.0017 29.9 12.4 17 312-328 19-35 (110)
376 PF07889 DUF1664: Protein of u 72.5 1E+02 0.0022 30.4 13.4 43 445-487 68-110 (126)
377 PRK02119 hypothetical protein; 72.5 24 0.00052 31.4 8.2 38 297-334 10-47 (73)
378 PF03962 Mnd1: Mnd1 family; I 72.5 70 0.0015 33.4 13.0 20 343-362 108-127 (188)
379 PRK04325 hypothetical protein; 72.4 24 0.00053 31.4 8.2 41 322-362 7-47 (74)
380 PF05278 PEARLI-4: Arabidopsis 72.4 1.2E+02 0.0026 33.5 15.1 45 311-355 215-259 (269)
381 PLN03229 acetyl-coenzyme A car 72.3 2.7E+02 0.0058 35.1 24.4 9 495-503 650-658 (762)
382 PF05266 DUF724: Protein of un 72.1 1.3E+02 0.0029 31.5 16.7 6 273-278 89-94 (190)
383 PF15372 DUF4600: Domain of un 72.1 1.1E+02 0.0023 30.4 13.2 106 391-511 4-110 (129)
384 PRK02119 hypothetical protein; 71.8 28 0.0006 31.0 8.4 41 322-362 7-47 (73)
385 PF09738 DUF2051: Double stran 71.7 90 0.0019 35.1 14.3 22 540-561 223-244 (302)
386 KOG3091 Nuclear pore complex, 71.6 2E+02 0.0043 34.4 17.4 12 157-168 154-165 (508)
387 PF07058 Myosin_HC-like: Myosi 71.5 1.8E+02 0.0039 32.7 18.6 22 484-505 63-84 (351)
388 KOG1850 Myosin-like coiled-coi 71.5 1.8E+02 0.004 32.8 42.4 46 466-511 229-274 (391)
389 PF12252 SidE: Dot/Icm substra 71.5 3.2E+02 0.007 35.6 31.3 50 290-339 1064-1118(1439)
390 PF05276 SH3BP5: SH3 domain-bi 71.1 1.6E+02 0.0035 32.1 30.7 84 424-507 84-169 (239)
391 PRK02793 phi X174 lysis protei 70.9 25 0.00054 31.1 7.9 27 298-324 10-36 (72)
392 PRK00736 hypothetical protein; 70.9 26 0.00057 30.7 8.0 40 324-363 5-44 (68)
393 TIGR02231 conserved hypothetic 70.6 44 0.00095 40.1 12.6 18 741-758 348-365 (525)
394 PRK13729 conjugal transfer pil 70.6 16 0.00036 43.0 8.6 40 457-496 67-106 (475)
395 PF10046 BLOC1_2: Biogenesis o 70.5 94 0.002 29.0 12.8 40 437-476 20-59 (99)
396 PF05278 PEARLI-4: Arabidopsis 70.5 1.3E+02 0.0028 33.3 14.8 56 428-483 204-259 (269)
397 COG3206 GumC Uncharacterized p 70.5 2.3E+02 0.0049 33.4 27.2 27 492-518 371-397 (458)
398 KOG0972 Huntingtin interacting 70.4 1.4E+02 0.0029 33.5 14.8 39 411-449 260-298 (384)
399 PF04899 MbeD_MobD: MbeD/MobD 70.4 64 0.0014 28.6 10.2 61 439-499 8-68 (70)
400 KOG2991 Splicing regulator [RN 70.4 1.7E+02 0.0038 32.1 25.9 15 197-211 39-53 (330)
401 PF06810 Phage_GP20: Phage min 70.3 63 0.0014 32.8 11.8 49 467-515 28-79 (155)
402 PTZ00121 MAEBL; Provisional 70.3 4E+02 0.0086 36.2 42.2 12 606-617 1844-1855(2084)
403 PF12072 DUF3552: Domain of un 70.2 1.5E+02 0.0032 31.2 24.5 15 500-514 164-178 (201)
404 PF03999 MAP65_ASE1: Microtubu 70.1 60 0.0013 39.9 13.8 94 403-501 264-364 (619)
405 COG1382 GimC Prefoldin, chaper 69.9 1.1E+02 0.0025 29.8 13.2 30 506-535 64-93 (119)
406 PRK02793 phi X174 lysis protei 69.9 28 0.0006 30.8 8.0 41 322-362 6-46 (72)
407 PF06818 Fez1: Fez1; InterPro 69.5 1.6E+02 0.0035 31.3 22.8 22 315-336 85-106 (202)
408 PF04102 SlyX: SlyX; InterPro 69.0 25 0.00054 30.8 7.4 39 323-361 3-41 (69)
409 PRK11519 tyrosine kinase; Prov 69.0 1.3E+02 0.0027 37.8 16.5 33 421-453 264-296 (719)
410 PF11180 DUF2968: Protein of u 68.9 1.6E+02 0.0034 31.1 17.5 142 160-363 45-186 (192)
411 COG4913 Uncharacterized protei 68.8 3.1E+02 0.0068 34.4 29.6 39 449-487 765-804 (1104)
412 TIGR00618 sbcc exonuclease Sbc 68.6 3.7E+02 0.0081 35.2 47.1 325 242-569 187-582 (1042)
413 KOG4687 Uncharacterized coiled 68.6 87 0.0019 34.6 12.7 45 461-505 18-62 (389)
414 PF03962 Mnd1: Mnd1 family; I 68.5 1.2E+02 0.0026 31.7 13.7 29 421-449 66-94 (188)
415 TIGR00998 8a0101 efflux pump m 68.4 2E+02 0.0043 31.9 17.3 10 552-561 188-197 (334)
416 PF05700 BCAS2: Breast carcino 68.4 1.7E+02 0.0037 31.2 18.4 68 292-359 139-210 (221)
417 KOG2891 Surface glycoprotein [ 68.3 2E+02 0.0043 31.9 18.5 8 227-234 212-219 (445)
418 KOG2751 Beclin-like protein [S 67.9 1.6E+02 0.0034 34.6 15.4 54 298-351 178-231 (447)
419 PRK10361 DNA recombination pro 67.5 2.8E+02 0.006 33.3 25.9 29 535-563 379-407 (475)
420 PF04582 Reo_sigmaC: Reovirus 67.5 9.7 0.00021 42.9 5.7 7 341-347 115-121 (326)
421 PF10211 Ax_dynein_light: Axon 67.4 1.7E+02 0.0036 30.7 19.7 30 328-357 124-153 (189)
422 PF06005 DUF904: Protein of un 67.3 92 0.002 27.7 11.4 18 315-332 16-33 (72)
423 KOG2391 Vacuolar sorting prote 67.3 43 0.00094 37.9 10.5 63 285-347 214-276 (365)
424 PF09789 DUF2353: Uncharacteri 67.3 2.3E+02 0.0049 32.3 25.1 8 504-511 220-227 (319)
425 PF06156 DUF972: Protein of un 67.2 36 0.00077 32.5 8.7 46 292-337 11-56 (107)
426 PF15456 Uds1: Up-regulated Du 66.9 1.1E+02 0.0023 30.1 12.1 27 240-266 20-46 (124)
427 PF10267 Tmemb_cc2: Predicted 66.7 2.3E+02 0.0049 33.2 16.6 22 535-556 297-318 (395)
428 CHL00118 atpG ATP synthase CF0 66.7 1.5E+02 0.0032 29.8 16.5 20 305-324 62-81 (156)
429 PRK14475 F0F1 ATP synthase sub 66.6 1.5E+02 0.0033 30.0 15.4 7 330-336 68-74 (167)
430 PRK00846 hypothetical protein; 66.5 49 0.0011 29.9 8.8 18 332-349 21-38 (77)
431 CHL00019 atpF ATP synthase CF0 66.4 1.6E+02 0.0035 30.3 15.5 25 300-324 59-83 (184)
432 PF10267 Tmemb_cc2: Predicted 66.3 2E+02 0.0043 33.7 16.0 28 244-271 214-241 (395)
433 PF02403 Seryl_tRNA_N: Seryl-t 66.1 54 0.0012 30.6 9.7 18 444-461 35-52 (108)
434 PF10212 TTKRSYEDQ: Predicted 65.9 3E+02 0.0066 33.2 23.1 77 349-430 438-514 (518)
435 PF01920 Prefoldin_2: Prefoldi 65.8 1.1E+02 0.0024 28.0 13.0 24 429-452 10-33 (106)
436 PF15035 Rootletin: Ciliary ro 65.8 1.8E+02 0.0038 30.4 20.7 30 489-518 143-172 (182)
437 PRK13729 conjugal transfer pil 65.5 21 0.00045 42.2 8.1 8 193-200 29-36 (475)
438 PF02841 GBP_C: Guanylate-bind 65.5 2.3E+02 0.0049 31.5 18.4 138 279-416 153-297 (297)
439 PF12001 DUF3496: Domain of un 65.4 58 0.0013 31.4 9.7 39 479-517 28-66 (111)
440 KOG0244 Kinesin-like protein [ 65.3 4E+02 0.0086 34.3 28.4 11 121-131 188-198 (913)
441 PF05377 FlaC_arch: Flagella a 64.9 35 0.00075 28.9 7.1 47 468-514 2-48 (55)
442 PF05700 BCAS2: Breast carcino 64.6 2E+02 0.0044 30.7 18.2 33 321-353 179-211 (221)
443 PRK00846 hypothetical protein; 64.4 58 0.0013 29.4 8.9 45 294-338 11-55 (77)
444 PF02403 Seryl_tRNA_N: Seryl-t 64.3 74 0.0016 29.7 10.3 24 292-315 39-62 (108)
445 PF12072 DUF3552: Domain of un 64.3 1.9E+02 0.0042 30.3 25.3 11 292-302 67-77 (201)
446 PF06428 Sec2p: GDP/GTP exchan 64.0 7.2 0.00016 36.8 3.3 67 272-345 13-79 (100)
447 PF08647 BRE1: BRE1 E3 ubiquit 64.0 1.3E+02 0.0027 28.1 13.5 46 466-511 3-48 (96)
448 KOG0993 Rab5 GTPase effector R 63.1 3E+02 0.0066 32.2 39.4 16 551-566 515-530 (542)
449 PF12329 TMF_DNA_bd: TATA elem 63.0 1.1E+02 0.0024 27.2 10.7 8 317-324 33-40 (74)
450 PF15272 BBP1_C: Spindle pole 63.0 2.1E+02 0.0046 30.3 20.6 113 242-361 12-130 (196)
451 KOG4460 Nuclear pore complex, 63.0 3.5E+02 0.0076 32.9 20.3 31 417-447 655-685 (741)
452 KOG3850 Predicted membrane pro 62.9 3E+02 0.0064 32.0 17.6 44 294-340 297-340 (455)
453 TIGR03752 conj_TIGR03752 integ 62.4 87 0.0019 37.2 12.3 25 303-327 66-90 (472)
454 KOG0579 Ste20-like serine/thre 62.3 4E+02 0.0086 33.3 41.5 12 18-29 375-386 (1187)
455 PF00901 Orbi_VP5: Orbivirus o 62.2 3.4E+02 0.0074 32.5 19.8 21 270-290 108-128 (508)
456 KOG2077 JNK/SAPK-associated pr 61.9 1.8E+02 0.004 35.2 14.6 59 458-516 321-379 (832)
457 PRK08475 F0F1 ATP synthase sub 61.8 1.9E+02 0.0041 29.5 15.0 10 307-316 64-73 (167)
458 KOG3091 Nuclear pore complex, 61.8 3.5E+02 0.0076 32.5 18.4 163 326-490 336-508 (508)
459 PRK14472 F0F1 ATP synthase sub 61.6 1.9E+02 0.0042 29.5 15.5 94 315-408 47-141 (175)
460 PF14362 DUF4407: Domain of un 61.6 2.6E+02 0.0056 30.9 16.4 128 428-555 111-254 (301)
461 PF02994 Transposase_22: L1 tr 61.3 21 0.00045 41.1 7.1 105 244-349 86-190 (370)
462 PF07794 DUF1633: Protein of u 61.3 1.5E+02 0.0032 35.3 13.6 111 422-532 602-725 (790)
463 PF06005 DUF904: Protein of un 61.0 1.2E+02 0.0026 27.0 11.4 68 438-505 4-71 (72)
464 PF12329 TMF_DNA_bd: TATA elem 60.6 1.2E+02 0.0027 26.9 10.7 71 449-519 2-72 (74)
465 PRK14154 heat shock protein Gr 60.4 1.9E+02 0.0041 30.9 13.4 96 244-363 54-149 (208)
466 PF13747 DUF4164: Domain of un 60.4 1.4E+02 0.0031 27.5 11.7 81 436-516 6-89 (89)
467 KOG2008 BTK-associated SH3-dom 60.4 3E+02 0.0064 31.2 28.3 221 329-559 1-237 (426)
468 PRK15178 Vi polysaccharide exp 60.3 3.5E+02 0.0077 32.1 18.6 164 392-555 215-388 (434)
469 PRK13169 DNA replication intia 59.8 57 0.0012 31.4 8.6 55 283-338 3-57 (110)
470 PRK07353 F0F1 ATP synthase sub 59.7 1.8E+02 0.0038 28.4 15.4 94 315-408 34-128 (140)
471 PF06120 Phage_HK97_TLTM: Tail 59.7 3E+02 0.0065 31.1 19.8 149 232-394 22-190 (301)
472 PRK03947 prefoldin subunit alp 59.6 1.8E+02 0.0039 28.5 14.3 94 409-502 5-137 (140)
473 PF04582 Reo_sigmaC: Reovirus 59.1 19 0.00042 40.6 6.1 124 251-380 30-153 (326)
474 PRK14139 heat shock protein Gr 59.1 1.8E+02 0.0039 30.5 12.8 92 242-336 32-123 (185)
475 PF08581 Tup_N: Tup N-terminal 58.7 1.4E+02 0.0031 27.0 12.0 75 301-375 2-76 (79)
476 PF07851 TMPIT: TMPIT-like pro 58.0 1.3E+02 0.0029 34.2 12.5 81 280-361 3-91 (330)
477 PF12761 End3: Actin cytoskele 58.0 62 0.0013 34.1 9.2 122 215-352 72-195 (195)
478 PF12777 MT: Microtubule-bindi 57.8 3.3E+02 0.0072 31.0 26.0 235 256-492 1-310 (344)
479 PF07200 Mod_r: Modifier of ru 57.7 2E+02 0.0044 28.4 14.2 122 426-555 29-150 (150)
480 KOG1962 B-cell receptor-associ 57.6 1.8E+02 0.004 31.2 12.7 97 424-525 114-210 (216)
481 TIGR02971 heterocyst_DevB ABC 57.5 3.1E+02 0.0066 30.4 19.3 138 423-560 54-203 (327)
482 PF06156 DUF972: Protein of un 57.4 62 0.0013 30.9 8.4 52 312-363 3-54 (107)
483 PRK13455 F0F1 ATP synthase sub 57.0 2.4E+02 0.0052 29.1 15.4 94 315-408 56-150 (184)
484 KOG4001 Axonemal dynein light 56.6 1.5E+02 0.0032 31.5 11.5 78 459-536 171-252 (259)
485 KOG4572 Predicted DNA-binding 56.2 5.3E+02 0.012 32.8 29.5 304 256-572 839-1165(1424)
486 PRK10803 tol-pal system protei 56.0 65 0.0014 35.3 9.5 69 443-511 38-106 (263)
487 KOG4466 Component of histone d 55.8 2.3E+02 0.005 31.5 13.2 94 441-539 19-132 (291)
488 COG5293 Predicted ATPase [Gene 55.4 4.3E+02 0.0093 31.5 28.1 243 310-552 193-454 (591)
489 PRK14473 F0F1 ATP synthase sub 55.2 2.4E+02 0.0051 28.4 15.5 94 315-408 37-131 (164)
490 PF15456 Uds1: Up-regulated Du 55.0 2.2E+02 0.0047 28.0 11.9 82 240-326 20-111 (124)
491 PF15294 Leu_zip: Leucine zipp 55.0 3.4E+02 0.0075 30.3 29.5 238 319-559 3-276 (278)
492 COG1566 EmrA Multidrug resista 54.8 3.6E+02 0.0079 31.1 15.5 110 427-536 87-207 (352)
493 COG4717 Uncharacterized conser 54.3 5.9E+02 0.013 32.8 34.3 268 252-521 553-855 (984)
494 PF05262 Borrelia_P83: Borreli 54.2 4.7E+02 0.01 31.6 18.5 141 404-563 204-345 (489)
495 PRK14151 heat shock protein Gr 53.9 2.5E+02 0.0053 29.2 12.8 96 244-363 22-117 (176)
496 TIGR03545 conserved hypothetic 53.7 1.7E+02 0.0036 35.8 13.2 105 262-370 163-269 (555)
497 PF10046 BLOC1_2: Biogenesis o 53.7 1.9E+02 0.0042 27.0 12.7 85 254-357 12-99 (99)
498 PRK13169 DNA replication intia 53.6 78 0.0017 30.5 8.4 52 312-363 3-54 (110)
499 PF10805 DUF2730: Protein of u 53.4 1.3E+02 0.0027 28.6 9.8 66 430-495 34-101 (106)
500 PRK14143 heat shock protein Gr 53.4 2.6E+02 0.0056 30.5 13.3 98 242-339 67-164 (238)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.89 E-value=1.1e-19 Score=230.66 Aligned_cols=288 Identities=23% Similarity=0.306 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Q 002902 291 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR-- 368 (868)
Q Consensus 291 ~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~-- 368 (868)
++.++.+|.+++.++++..+.+.++..++.++.+++.++..++++.+..+..+.+.+..+..+|.+++++|+++.+..
T Consensus 1240 ~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~ 1319 (1930)
T KOG0161|consen 1240 DKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSA 1319 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999977432
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------
Q 002902 369 ------------------RVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIA------------ 418 (868)
Q Consensus 369 ------------------~EElEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~------------ 418 (868)
.++..+.+.+|..++++++.++++|++++++...+..+++++.+.++...
T Consensus 1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~ 1399 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAAN 1399 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22222346677789999999999999999988888788888876665211
Q ss_pred ---------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 419 ---------EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 489 (868)
Q Consensus 419 ---------EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~ 489 (868)
..++..+++++..+++..++.+..++++++.|++.+++|+.....+..+++..+++.+.+.+++..+..++
T Consensus 1400 ~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~l 1479 (1930)
T KOG0161|consen 1400 AKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNAL 1479 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12556778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q 002902 490 EVAWAKVSGLEL------------------------DILAATRDLDFERRRLKAARE--------------RIMLRETQL 531 (868)
Q Consensus 490 eel~d~i~~Le~------------------------ELeka~reLE~Ek~rLq~erE--------------rLq~reqQl 531 (868)
+++.+.+..|.+ +|++..+.++.++.+|+.+++ |+++.++++
T Consensus 1480 ee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~ 1559 (1930)
T KOG0161|consen 1480 EELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQL 1559 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 999998888777 556688888888888877755 667778888
Q ss_pred HHhh-----chHHHHHHHHHHHHHHHHHHhhhHHHHhhhccccc------ccccCCCC
Q 002902 532 RAFY-----STTEEISVLFARQQEQLKAMQKTLEDEENYENTSV------DIDLCVPD 578 (868)
Q Consensus 532 kae~-----ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a~------~~dlnele 578 (868)
+.++ ++++++++.++++++.|++||.+|++|.|+|+.++ .+|||+||
T Consensus 1560 r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE 1617 (1930)
T KOG0161|consen 1560 RSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELE 1617 (1930)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHH
Confidence 8776 89999999999999999999999999999999999 37888888
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.85 E-value=5.1e-23 Score=251.86 Aligned_cols=332 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQ 322 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kL 322 (868)
.|..+.+....|.+....+..+++.+..++..+... +..+. +.+++++.+|.+++.++++.++.++++...+.+|
T Consensus 139 qle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~----k~~~E-k~~K~lE~qL~El~~klee~er~~~el~~~k~kL 213 (859)
T PF01576_consen 139 QLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKA----KQEAE-KKRKQLEAQLNELQAKLEESERQRNELTEQKAKL 213 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHH-hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555444555555555555333322 33343 3358999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------H---HHHHHHHHHHHHH
Q 002902 323 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR-----------------R---VDRENAEADLKAA 382 (868)
Q Consensus 323 EsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~-----------------~---EElEe~~~eLq~q 382 (868)
+.++.+|..+|+..+..+..+.+.+..+..+|.+++++|+++.+.+ + ++....+..++.+
T Consensus 214 ~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~q 293 (859)
T PF01576_consen 214 QSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQ 293 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999987432 1 1122346666789
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----H--------------H---HHHHHHhHHHHHHHHHHHHHHHH
Q 002902 383 VQKSQLETQEKLKRLSDAASRRELEQQEVINKLQ----I--------------A---EKQSSLQVESLKLKLDETRERLV 441 (868)
Q Consensus 383 L~kl~~el~eerkk~eee~~~~~EElee~l~KLe----E--------------~---EKK~r~elEdL~~eLE~~ra~~~ 441 (868)
+++++.++..|+++++.+.....++++++..+|. + . .+++..+++|++.+|+..++.+.
T Consensus 294 lsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~ 373 (859)
T PF01576_consen 294 LSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAA 373 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888787888887766652 1 1 13667779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 002902 442 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL-------------------- 501 (868)
Q Consensus 442 ~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~-------------------- 501 (868)
.|+++++.|++.+.+|+..+..++..+..++.+.+.+.++++.++.+++++.+.+..|++
T Consensus 374 ~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~ 453 (859)
T PF01576_consen 374 ELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAG 453 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Confidence 999999999999999999999999999999999999999999999999888888888777
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhhh
Q 002902 502 ----DILAATRDLDFERRRLKAARE--------------RIMLRETQLRAFY-----STTEEISVLFARQQEQLKAMQKT 558 (868)
Q Consensus 502 ----ELeka~reLE~Ek~rLq~erE--------------rLq~reqQlkae~-----ek~EEi~e~~k~~~~qLr~LQ~e 558 (868)
+|+++++.|+.++.+|+.+++ |+++.++++++++ ++.+++++.+++++++|+.|+.+
T Consensus 454 k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~ 533 (859)
T PF01576_consen 454 KSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAE 533 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhH
Confidence 456789999999888766644 8999999998888 88999999999999999999999
Q ss_pred HHHHhhhccccc------ccccCCCCC
Q 002902 559 LEDEENYENTSV------DIDLCVPDG 579 (868)
Q Consensus 559 LE~E~r~rs~a~------~~dlnele~ 579 (868)
||.|.++|+.++ ++||++|+-
T Consensus 534 LE~E~k~r~~~~r~kkKLE~~l~eLe~ 560 (859)
T PF01576_consen 534 LEEERKERAEALREKKKLESDLNELEI 560 (859)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 389999884
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.78 E-value=1.8e-15 Score=193.02 Aligned_cols=331 Identities=20% Similarity=0.255 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLE-----IDKLRNEN-----RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELA 313 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~e-----i~~Lr~ev-----k~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~ 313 (868)
.+.++.++.+|+.+++++... .+.++.++ +.-.++...++.+-.+..++++..+|+.++..|+...+.++
T Consensus 1521 ~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~ 1600 (1930)
T KOG0161|consen 1521 KRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKS 1600 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 677788888888888887553 34444332 55556667777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------HHHHH
Q 002902 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA-------------EADLK 380 (868)
Q Consensus 314 el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~-------------~~eLq 380 (868)
++.+.+++|+.++++|..+++.++..+.++.+.+++++.++.+|+.++++.+....+-++.. ..+|.
T Consensus 1601 e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~ 1680 (1930)
T KOG0161|consen 1601 EALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELR 1680 (1930)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886654443221 11111
Q ss_pred ---HHHHHHHHH---------------------HHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHH
Q 002902 381 ---AAVQKSQLE---------------------TQEKLKRLSDAASRRELEQQEVINKL---QIAEKQSSLQVESLKLKL 433 (868)
Q Consensus 381 ---~qL~kl~~e---------------------l~eerkk~eee~~~~~EElee~l~KL---eE~EKK~r~elEdL~~eL 433 (868)
..+.+++.. +...+++++..+.....++++....+ .++.+++..+...+..+|
T Consensus 1681 ~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el 1760 (1930)
T KOG0161|consen 1681 EKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEEL 1760 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Confidence 112222222 22233333333333333444443333 355678888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 434 DETRERLVTSDNKVRLLETQVCKEQNVSASW--------KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 434 E~~ra~~~~LEkkqr~LE~qLeEEk~~~~~l--------qkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
...+..+..++..++.|++++.+.+.+...+ .+.+..|+++|+.|+.+|+.+...+.+..+.++.+++.+..
T Consensus 1761 ~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkE 1840 (1930)
T KOG0161|consen 1761 RKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKE 1840 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHH
Confidence 9999999999988888888888866655554 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccccccCCCC
Q 002902 506 ATRDLDFERR---RLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSVDIDLCVPD 578 (868)
Q Consensus 506 a~reLE~Ek~---rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a~~~dlnele 578 (868)
...+++.+++ +++..+++++.+++++|++++..++..+.... +++.+|++|++ ..-|+..++.+++-|-
T Consensus 1841 l~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~---k~R~~q~ele~-a~erad~~e~~~~~lr 1912 (1930)
T KOG0161|consen 1841 LQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLS---KYRKLQRELEE-AEERADTAESELNKLR 1912 (1930)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999988 79999999999999999999888888877777 89999999999 7778888887776655
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.63 E-value=1.4e-12 Score=165.79 Aligned_cols=387 Identities=22% Similarity=0.257 Sum_probs=177.0
Q ss_pred EEEEeC-CcCCeeeCCeeccCCCCccccCCCCEEEecc-----CCCCCceEEEEEeeccCCCCcc---------------
Q 002902 150 VCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAA-----PPQHDLAFAFVFRDVSRSTPTM--------------- 208 (868)
Q Consensus 150 ~~L~D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~-----~~~~~~~f~fvf~d~~~~~~~~--------------- 208 (868)
-||+.. -...|||+..+|.+..........+.|.+++ ||.+..+|.|+|+++++++.+.
T Consensus 559 ~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~~ri 638 (1163)
T COG1196 559 EFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRI 638 (1163)
T ss_pred HHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCCceE
Confidence 345554 3489999999998622111111344443332 5566779999999999998764
Q ss_pred ---hhHH-hhhhhhhhcccccccccccccCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002902 209 ---EGAA-AKRKAEEYVSDNKRLKGIGICSPDGPLSL-DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEM 283 (868)
Q Consensus 209 ---~g~~-~K~~a~~~~s~~~~~k~lg~g~~~g~vsi-d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El 283 (868)
+|+. .++|+++||+..++ . + +.. .++..|..++..++.++......+..+..++..+... +
T Consensus 639 VTl~G~~~~~~G~~tGG~~~~~--~-------~-~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 704 (1163)
T COG1196 639 VTLDGDLVEPSGSITGGSRNKR--S-------S-LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL----L 704 (1163)
T ss_pred EecCCcEEeCCeeeecCCcccc--c-------h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 4544 56666666643221 1 0 100 1355667777777777777777766666666555444 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 284 KEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHE-------MEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (868)
Q Consensus 284 ~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsE-------l~EL~~qLe~~e~~~~eL~k~l~kLe~qI~E 356 (868)
.++...+ ..+..++..+...+......+.++...+..++.+ +..+..++...+..+..+.+.+..++..+..
T Consensus 705 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 783 (1163)
T COG1196 705 EELRRQL-EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783 (1163)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 2233333333333333333333333333333333 3333333333333333333333333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHHH
Q 002902 357 LKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQ--------------IAEKQS 422 (868)
Q Consensus 357 Lq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLe--------------E~EKK~ 422 (868)
+...+.... .....++..+..+...+..+..++..|..+.+ .+...++.+...+..++ .....+
T Consensus 784 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 861 (1163)
T COG1196 784 LEEKRQALQ-EELEELEEELEEAERRLDALERELESLEQRRE-RLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861 (1163)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222111111 11111112222222333333334444433331 22222222222222221 111222
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----
Q 002902 423 SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKK-------LREELESEKAARE----- 490 (868)
Q Consensus 423 r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIre-------LeeELe~e~~e~e----- 490 (868)
..+++.++.++..+...+..++.++..++.++.+.......+...+..+..++.. +...+......+.
T Consensus 862 ~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1163)
T COG1196 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 2222333333333333333333333333333333333333333333333333322 2222222211111
Q ss_pred ----HHHHHHHHHHHHHHH-------HHHHHHHHHHH---HH-------HHHHHHHHHHHH---H--HHhhchHHHHHHH
Q 002902 491 ----VAWAKVSGLELDILA-------ATRDLDFERRR---LK-------AARERIMLRETQ---L--RAFYSTTEEISVL 544 (868)
Q Consensus 491 ----el~d~i~~Le~ELek-------a~reLE~Ek~r---Lq-------~erErLq~reqQ---l--kae~ek~EEi~e~ 544 (868)
++...+..++.+|+. |+.+|+....| |. ..+..|+..+.. . ..|+++|..|+.+
T Consensus 942 ~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~ 1021 (1163)
T COG1196 942 TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINEN 1021 (1163)
T ss_pred chhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777655 78888877775 22 333344444222 2 6677999999999
Q ss_pred HHHHHHHHH
Q 002902 545 FARQQEQLK 553 (868)
Q Consensus 545 ~k~~~~qLr 553 (868)
|..+|+.|-
T Consensus 1022 F~~if~~L~ 1030 (1163)
T COG1196 1022 FSEIFKELF 1030 (1163)
T ss_pred HHHHHHHhC
Confidence 999999883
No 5
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.62 E-value=5.9e-12 Score=138.26 Aligned_cols=270 Identities=20% Similarity=0.262 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV------SISYLHQLKVLRDMLDAKQKELAE 314 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i------~KklE~QLeELq~kLeE~ek~l~e 314 (868)
|++|+.|+.+|..|+.++..+... ....+..+...|+.++.+++..+ +.+++.++..++..+++.+..+..
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~---~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREK---KGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhc---ccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 599999999999999999988777 35566778888999998888887 457888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRE---------NAEADLKAAVQK 385 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElE---------e~~~eLq~qL~k 385 (868)
.......++.++..|...++.+.....+++..+..|+.+|.-++...+++...++.... ....+|...|..
T Consensus 94 e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~e 173 (312)
T PF00038_consen 94 ELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALRE 173 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhh
Confidence 99999999999999999999999999999999999998888888877776654432221 112333334444
Q ss_pred HHHHHHHHHHHhh----HHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 386 SQLETQEKLKRLS----DAASRRELEQQ-------EVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 454 (868)
Q Consensus 386 l~~el~eerkk~e----ee~~~~~EEle-------e~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qL 454 (868)
++.+-.....+.. .-....+.++. ..+..+++..+.++..+..|..+++.++.....|++.+..++..+
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 4333221111111 11111222222 223333344456666677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 455 CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 516 (868)
Q Consensus 455 eEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~r 516 (868)
..+...+ +..+..++.++..++.++.....+|+++++.+-+|+.||..|++.||+|..|
T Consensus 254 ~~~~~~~---~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEgEE~R 312 (312)
T PF00038_consen 254 DEEREEY---QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEGEESR 312 (312)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHC--
T ss_pred HHHHHHH---HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcccC
Confidence 7666655 8899999999999999999999999999999999999999999999998654
No 6
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=99.62 E-value=2.3e-13 Score=156.58 Aligned_cols=270 Identities=17% Similarity=0.207 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------------SISYLHQLKVLRDMLDA 307 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i-------------~KklE~QLeELq~kLeE 307 (868)
|++||+|+.+|..|..++..++.. +..+...++..|+.|+..++..+ .++++.++.++..++++
T Consensus 55 IekVR~LEaqN~~L~~di~~lr~~---~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 55 IEKVRFLEAQNRKLEHDINLLRGV---VGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---ccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 699999999999999999999887 77777888888998888887766 23788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHH----------HH
Q 002902 308 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK-------SQKVTIDELKTQLDEERNLR----------RV 370 (868)
Q Consensus 308 ~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~-------kLe~qI~ELq~qLEEEr~~~----------~E 370 (868)
.++.+......+..+..-+.++++.+..+...+..++.++. +|..+|..+..+|++|.-.+ .+
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88877776666666666666666655555555555544444 55555566666666655221 11
Q ss_pred HHHHH-------HHHHHH-------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHH-------------
Q 002902 371 DRENA-------EADLKA-------------AVQKSQLETQEKLKRLSDAASRRELEQQE-VINKLQ------------- 416 (868)
Q Consensus 371 ElEe~-------~~eLq~-------------qL~kl~~el~eerkk~eee~~~~~EElee-~l~KLe------------- 416 (868)
++.-. +.++.. --.+|...+.+.+..|+.......++++. |..|++
T Consensus 212 el~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 212 ELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQ 291 (546)
T ss_pred HHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchh
Confidence 11000 111100 01123333555555555333333334444 344443
Q ss_pred ----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 417 ----IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVA 492 (868)
Q Consensus 417 ----E~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel 492 (868)
|..++.+..+..|+.+|..+......|++++..|.-++.+++..+ +..+...+++|..|++++..+..+|+.|
T Consensus 292 ~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~---e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 292 NYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF---EQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666778888888888888888899999999999988888 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 493 WAKVSGLELDILAATRDLDFERRR 516 (868)
Q Consensus 493 ~d~i~~Le~ELeka~reLE~Ek~r 516 (868)
.+....|+.||..|++.|+.+..+
T Consensus 369 lD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 369 LDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred hchHhHHHhHHHHHHHHhccccCC
Confidence 999999999999999999998554
No 7
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.58 E-value=1.1e-16 Score=196.42 Aligned_cols=329 Identities=25% Similarity=0.308 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhh--h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQLESQVLEID-----KLRNE--N---RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLEe~~~ei~-----~Lr~e--v---k~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l 312 (868)
..+.|+.++.+|+.++++....+. .+|.+ + +....+...++.+..+.+++++..+|..|+..|+...+.+
T Consensus 462 ~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r 541 (859)
T PF01576_consen 462 AKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKER 541 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHH
Confidence 377888888888888877744432 22222 2 3333444455666778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHH-----
Q 002902 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDREN------AEADLKA----- 381 (868)
Q Consensus 313 ~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe------~~~eLq~----- 381 (868)
+.+...+++|+.++++|..+|..+.....++.+.+++++.+|.+|+..|++....+.+..+. +...|+.
T Consensus 542 ~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~ 621 (859)
T PF01576_consen 542 AEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEEL 621 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987554332111 1111111
Q ss_pred -----HHHHHHHH---------------------HHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHH
Q 002902 382 -----AVQKSQLE---------------------TQEKLKRLSDAASRRELEQQEVINKL---QIAEKQSSLQVESLKLK 432 (868)
Q Consensus 382 -----qL~kl~~e---------------------l~eerkk~eee~~~~~EElee~l~KL---eE~EKK~r~elEdL~~e 432 (868)
...+++.. +...+.+++........++++....+ .++.+++..++..|..+
T Consensus 622 ~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~e 701 (859)
T PF01576_consen 622 REALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEE 701 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 11111111 22222223222222222333332222 24456888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 433 LDETRERLVTSDNKVRLLETQVCKEQNVSASW--------KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (868)
Q Consensus 433 LE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~l--------qkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELe 504 (868)
|...+..+..+++.++.|+.++.+.+.++..+ .+.+..++.+|++|+.+|+.+...+.++...++.+++.|.
T Consensus 702 L~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~k 781 (859)
T PF01576_consen 702 LRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVK 781 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999998866655554 6788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccccccC
Q 002902 505 AATRDLDFERR---RLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSVDIDLC 575 (868)
Q Consensus 505 ka~reLE~Ek~---rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a~~~dln 575 (868)
.+..+++.++. +++..+++++.+++++|.+++..++..+.... ++|.+|++||+ ...++..+..+|+
T Consensus 782 El~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~---k~Rk~q~elee-~~e~~~~~e~~l~ 851 (859)
T PF01576_consen 782 ELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLA---KYRKLQRELEE-AEERAEAAERELN 851 (859)
T ss_dssp ----------------------------------------------------SSSSHHHH-HTCCHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999987 68899999999999999999888888877666 89999999999 7777777665554
No 8
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.53 E-value=2.2e-14 Score=122.58 Aligned_cols=67 Identities=33% Similarity=0.487 Sum_probs=59.3
Q ss_pred eEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCccccCCCCEEE
Q 002902 105 HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIIS 183 (868)
Q Consensus 105 ~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~ 183 (868)
|+|||++.| ||+|+++.||+.||.|++... ..|||.|+ |+|||||||.+|.+ +.++.|.+||+|.
T Consensus 1 ~~iGR~~~~-di~l~~~~iSr~Ha~i~~~~~------------~~~~i~d~~s~ngt~vng~~l~~-~~~~~L~~gd~i~ 66 (68)
T PF00498_consen 1 VTIGRSPDC-DIVLPDPSISRRHARISFDDD------------GQFYIEDLGSTNGTFVNGQRLGP-GEPVPLKDGDIIR 66 (68)
T ss_dssp EEEESSTTS-SEEETSTTSSTTSEEEEEETT------------EEEEEEESSSSS-EEETTEEESS-TSEEEE-TTEEEE
T ss_pred CEEcCCCCC-CEEECCHheeeeeeEEEEece------------eeEEEEeCCCCCcEEECCEEcCC-CCEEECCCCCEEE
Confidence 689999887 999999999999999998752 26999998 88999999999999 7889999999999
Q ss_pred ec
Q 002902 184 FA 185 (868)
Q Consensus 184 ~~ 185 (868)
||
T Consensus 67 ~G 68 (68)
T PF00498_consen 67 FG 68 (68)
T ss_dssp ET
T ss_pred cC
Confidence 97
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.52 E-value=1.7e-10 Score=146.25 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCCCceEEEEEeeccCCCCcc--------------hhHH-hhhhhhhhcccccccccccccCCCCCCCHHHHHHHHHHH
Q 002902 187 PPQHDLAFAFVFRDVSRSTPTM--------------EGAA-AKRKAEEYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSN 251 (868)
Q Consensus 187 ~~~~~~~f~fvf~d~~~~~~~~--------------~g~~-~K~~a~~~~s~~~~~k~lg~g~~~g~vsid~Vr~LE~En 251 (868)
++.+.+.+.|+|+.+++++.+. +|.. .++|+|+||+.... . +.......-.++..+..++
T Consensus 609 ~~~~~~~~~~~lg~~~v~~~l~~a~~~~~~~~~vTldG~~~~~~G~~tgG~~~~~--~---~~~~~~~~~~~l~~l~~~l 683 (1164)
T TIGR02169 609 DPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPR--G---GILFSRSEPAELQRLRERL 683 (1164)
T ss_pred cHHHHHHHHHHCCCeEEEcCHHHHHHHhcCCcEEEeCceeEcCCcCccCCCCCCC--C---CcccccccHHHHHHHHHHH
Confidence 4444456778888877776543 3555 55566666652110 0 0111100013455566666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 252 TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 331 (868)
Q Consensus 252 ~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~ 331 (868)
..|..++......+..++.++..+... +..+...+ ..+..++..+...+......+..+...+..++.++..+..
T Consensus 684 ~~l~~~l~~l~~~~~~~~~~l~~l~~~----~~~~~~~~-~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 758 (1164)
T TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQE----LSDASRKI-GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555555555544333322 33333222 2233334444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 332 RLSASMQSCTEANEIMKSQKVTIDELK 358 (868)
Q Consensus 332 qLe~~e~~~~eL~k~l~kLe~qI~ELq 358 (868)
.+..+...+..+...+..++..+..++
T Consensus 759 el~~l~~~i~~l~~~i~~l~~el~~l~ 785 (1164)
T TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLE 785 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 10
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.44 E-value=1.2e-13 Score=142.36 Aligned_cols=128 Identities=17% Similarity=0.153 Sum_probs=97.3
Q ss_pred CccchhhhhccccCCCCCCCCCCceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeee
Q 002902 55 PSHFVFWVAGTYAAQPLQNYDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKK 134 (868)
Q Consensus 55 ~~~~~~~~a~~~a~~p~~~~~~~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~ 134 (868)
..+..++|+.+|..+|.+..+-..|..+.+.+.... . ..+...+++|+|||....+||.|++|++|++||+|++..
T Consensus 150 ~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~e~l-~---~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~ 225 (293)
T KOG1882|consen 150 DTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCYEVL-P---VLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRL 225 (293)
T ss_pred hhcceeeEEEEecCCchhcCchhheecccccCCccc-c---hheeeeeeeeecCceeeeeccCCCCccccccceeeeeee
Confidence 345557888899999999888888976655543211 1 112234789999999888999999999999999999887
Q ss_pred ccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCccccCCCCEEEeccC
Q 002902 135 FASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (868)
Q Consensus 135 ~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~ 187 (868)
+.+.-.+...-.....||.|+ |+||||||..+|.+ ..++.|..+|+|.||+.
T Consensus 226 v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~Iep-qRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 226 VEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEP-QRYYELREKDVLKFGFS 278 (293)
T ss_pred cccccCCCccceeeeeEEEecCCCCcceecCcccCc-hheeeeecCceeeeccc
Confidence 643311110112356999999 99999999999999 77899999999999953
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1.4e-09 Score=131.72 Aligned_cols=181 Identities=17% Similarity=0.259 Sum_probs=106.0
Q ss_pred ccCCCCEEEeccCCCCCceEEEEEeeccCCCCcc------------------hhHH-hhhhhhhhccccccccc-ccccC
Q 002902 175 NIDHGDIISFAAPPQHDLAFAFVFRDVSRSTPTM------------------EGAA-AKRKAEEYVSDNKRLKG-IGICS 234 (868)
Q Consensus 175 ~L~~GD~I~~~~~~~~~~~f~fvf~d~~~~~~~~------------------~g~~-~K~~a~~~~s~~~~~k~-lg~g~ 234 (868)
..+-.|.|.+. +|.+.++|+|+.++++|.+.+. +|.+ .++|.|+||-..- .+| .|...
T Consensus 693 vPRLfDLv~~~-d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v-~~g~mg~~~ 770 (1293)
T KOG0996|consen 693 VPRLFDLVKCK-DEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKV-KGGRMGTSI 770 (1293)
T ss_pred cchHhhhhccC-CHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcC-CCCCCCCcc
Confidence 34566777766 5667789999999999998775 5666 8999999875321 122 23222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 235 PDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAE 314 (868)
Q Consensus 235 ~~g~vsid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~e 314 (868)
....|+-..+..|++....+..........+-.+...+..++.+ ..++.-.+ .++...++.+-..++.+++++.+
T Consensus 771 ~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~----~~~l~~~l-~~~~~~~k~~~~~~~~l~~~i~~ 845 (1293)
T KOG0996|consen 771 RVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRER----IPELENRL-EKLTASVKRLAELIEYLESQIAE 845 (1293)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345667788888888877777777766655555555555444 33333333 33444444444444444444444
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 315 ISRISAEQKH---EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 315 l~~~k~kLEs---El~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
+++...+-.. .+.++..+++.++..+.++++...+ +++++.|+..++.
T Consensus 846 ~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~ 896 (1293)
T KOG0996|consen 846 LEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDE 896 (1293)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence 4444222222 3344445555555555555543334 5666666666555
No 12
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.29 E-value=3.1e-11 Score=109.52 Aligned_cols=90 Identities=31% Similarity=0.426 Sum_probs=73.1
Q ss_pred EEEEEecccccccCcceEEEecC-CceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-Cc
Q 002902 80 GVLTAISNNARKRHQGINILLTA-DEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-ST 157 (868)
Q Consensus 80 G~L~~~~~~~~~r~~g~~i~L~~-~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-St 157 (868)
..|..+... ..+..+.|.. ..++|||...|++|.|+++.||+.||.|++... ..+|+.+. |.
T Consensus 2 ~~L~~~~~~----~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~------------~~~~~~~~~s~ 65 (102)
T cd00060 2 PRLVVLSGD----ASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD------------GGVVLIDLGST 65 (102)
T ss_pred eEEEEecCC----CceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCC------------CCEEEEECCCC
Confidence 455555432 1355788888 899999999988999999999999999998752 13666665 88
Q ss_pred CCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 158 NGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 158 NGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
||||||+.++.+ +.++.|.+||+|.|+.
T Consensus 66 ~g~~vn~~~~~~-~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 66 NGTFVNGQRVSP-GEPVRLRDGDVIRLGN 93 (102)
T ss_pred CCeEECCEECCC-CCcEECCCCCEEEECC
Confidence 999999999997 5578999999999994
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.28 E-value=9.3e-08 Score=121.27 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhchHHHHH----HHHHHHHHHHHHHhhhHHHHh
Q 002902 522 ERIMLRETQLRAFYSTTEEIS----VLFARQQEQLKAMQKTLEDEE 563 (868)
Q Consensus 522 ErLq~reqQlkae~ek~EEi~----e~~k~~~~qLr~LQ~eLE~E~ 563 (868)
..|..++..+.+.++.+++.+ +++..+..++.+|...++...
T Consensus 968 ~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~ 1013 (1179)
T TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013 (1179)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544555565555 555555556655555555433
No 14
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.26 E-value=2.1e-11 Score=138.29 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=69.6
Q ss_pred cceEEEecCCceEeccCCCCCceeeCCCC--CcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeC--CeeccC
Q 002902 94 QGINILLTADEHCIGRLVDDAHFQIDSNA--VSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVN--CERFKK 169 (868)
Q Consensus 94 ~g~~i~L~~~~~~IGR~~~~~di~i~~~~--ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVN--g~ki~k 169 (868)
.+..+.+....++|||++.| +++|+++. ||+.||.|++.. ..|||+|+|+|||||| |.+|.+
T Consensus 15 ~~~~~~f~~~~~~IGR~~~~-d~~l~d~~~~VS~~Ha~I~~~~-------------g~~~l~DlStNGT~VN~sg~~l~~ 80 (396)
T TIGR03354 15 IAAQKTFGTNGGTIGRSEDC-DWVLPDPERHVSGRHARIRYRD-------------GAYLLTDLSTNGVFLNGSGSPLGR 80 (396)
T ss_pred cceEEEECCCCEEEecCCCC-CEEeCCCCCCcchhhcEEEEEC-------------CEEEEEECCCCCeEECCCCCCCCC
Confidence 34578888999999999997 99999998 999999999874 2599999999999999 899988
Q ss_pred CCCccccCCCCEEEecc
Q 002902 170 NSSEVNIDHGDIISFAA 186 (868)
Q Consensus 170 ~~~~~~L~~GD~I~~~~ 186 (868)
+.++.|.+||+|.||.
T Consensus 81 -~~~~~L~~GD~I~iG~ 96 (396)
T TIGR03354 81 -GNPVRLEQGDRLRLGD 96 (396)
T ss_pred -CCceEcCCCCEEEECC
Confidence 6678999999999994
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.20 E-value=1.2e-06 Score=111.43 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=6.0
Q ss_pred CeeeCCeecc
Q 002902 159 GTYVNCERFK 168 (868)
Q Consensus 159 GTfVNg~ki~ 168 (868)
-.|+||.++.
T Consensus 109 ~~~~n~~~~~ 118 (1164)
T TIGR02169 109 YYYLNGQRVR 118 (1164)
T ss_pred eEEECCcccc
Confidence 3567776553
No 16
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.15 E-value=9.4e-11 Score=140.36 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=74.5
Q ss_pred CCceEEEEEecccccccCcceEEEe---cCCceEeccCCCCCce-----eeCCCCCcccceeEEeeeccCCCCCCCCCCC
Q 002902 76 PKVWGVLTAISNNARKRHQGINILL---TADEHCIGRLVDDAHF-----QIDSNAVSANHCKIYRKKFASGDLDHSPSGC 147 (868)
Q Consensus 76 ~~~WG~L~~~~~~~~~r~~g~~i~L---~~~~~~IGR~~~~~di-----~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~ 147 (868)
..-| +|+|.+.... .-..|.| .+.+|+|||.+.| |+ +|+++.||+.||+|+++..
T Consensus 531 ~~~w-~l~~~~~~~~---~~~~~~l~~~~~~p~~iG~~~~~-~~~~~~i~i~~~~vS~~Ha~i~~~~~------------ 593 (668)
T PLN02927 531 KGEW-YLIPHGDDCC---VSETLCLTKDEDQPCIVGSEPDQ-DFPGMRIVIPSSQVSKMHARVIYKDG------------ 593 (668)
T ss_pred cCCe-EEEecCCCCc---ccceeeeecCCCCCeEecCCCCc-CCCCceEEecCCccChhHeEEEEECC------------
Confidence 3568 7777654322 1124777 5678999999998 85 9999999999999999862
Q ss_pred ceEEEEeC-CcCCeeeCCee---c--cCCCCccccCCCCEEEeccCC
Q 002902 148 SSVCLKDT-STNGTYVNCER---F--KKNSSEVNIDHGDIISFAAPP 188 (868)
Q Consensus 148 ~~~~L~D~-StNGTfVNg~k---i--~k~~~~~~L~~GD~I~~~~~~ 188 (868)
.+||+|+ |+|||||||++ | .+ +.++.|++||+|.||.+.
T Consensus 594 -~~~~~Dl~S~nGT~v~~~~~~r~~~~p-~~~~~l~~~d~I~~g~~~ 638 (668)
T PLN02927 594 -AFFLMDLRSEHGTYVTDNEGRRYRATP-NFPARFRSSDIIEFGSDK 638 (668)
T ss_pred -EEEEEECCCCCccEEeCCCCceEecCC-CCceEeCCCCEEEeCCCc
Confidence 6999999 89999998877 4 34 557899999999999753
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.14 E-value=1.7e-06 Score=110.02 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~ev 272 (868)
+..+..++..++.++..+...+..++.++
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~ 700 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKAL 700 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444444443
No 18
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.6e-10 Score=128.35 Aligned_cols=116 Identities=31% Similarity=0.328 Sum_probs=89.1
Q ss_pred CCCCceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeec----cCCCCCCCCCCCce
Q 002902 74 YDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKF----ASGDLDHSPSGCSS 149 (868)
Q Consensus 74 ~~~~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~----~~~d~~~~~~~~~~ 149 (868)
....+|++|..+..... ++.+..+.|++||++.| |++++.+.+|.+|..|+.... .+...+. ....+
T Consensus 41 ~~~~~r~r~~~v~~~~~------~~d~~nd~f~fGR~~~~-d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~--~~sn~ 111 (475)
T KOG0615|consen 41 ATVKPRARLVGVRRGIK------SIDLANDEFTFGRGDSC-DAPLNLNNVSNKHFKILLYNKISKIHFRIDRD--KNSNR 111 (475)
T ss_pred ccccchhhhcceeeccc------cceeccceEEecCCCcc-cccccCccccccchheeeeeeeeeeeecccCC--Cccce
Confidence 34467999987765433 68888999999999988 999999999999999865411 1111111 12357
Q ss_pred EEEEeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeeccC
Q 002902 150 VCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSR 203 (868)
Q Consensus 150 ~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~~~ 203 (868)
+||+|.|+||||||..+|++ +....|++||+|.|+.+. ...|+|.+...
T Consensus 112 ~y~~DhS~nGT~VN~e~i~k-~~~r~lkN~dei~is~p~----~~~~v~~~~s~ 160 (475)
T KOG0615|consen 112 VYLHDHSRNGTFVNDEMIGK-GLSRILKNGDEISISIPA----LKIFVFEDLSR 160 (475)
T ss_pred EEEEecccCcccccHhHhhc-cccccccCCCEEEeccch----hheeeeecccc
Confidence 99999999999999999999 777899999999999764 55688888643
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=99.08 E-value=4.8e-06 Score=103.96 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVL 263 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ 263 (868)
.++..+......+..+++.+..
T Consensus 279 ~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 279 EEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456665555555554444433
No 20
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=6.4e-07 Score=107.37 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=92.8
Q ss_pred CCeeeCCeeccCCCCccccCCCCEEEecc----CCCCCceEEEEEeeccCCCCcc----------------hhHH-hhhh
Q 002902 158 NGTYVNCERFKKNSSEVNIDHGDIISFAA----PPQHDLAFAFVFRDVSRSTPTM----------------EGAA-AKRK 216 (868)
Q Consensus 158 NGTfVNg~ki~k~~~~~~L~~GD~I~~~~----~~~~~~~f~fvf~d~~~~~~~~----------------~g~~-~K~~ 216 (868)
.-||+|.+||.. .......+.|.|-+.. .|+|..+|..||+.+.+..++. +|+. -|+|
T Consensus 575 rVTF~PLNrl~~-r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG 653 (1200)
T KOG0964|consen 575 RVTFMPLNRLKA-RDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKG 653 (1200)
T ss_pred eeEEeecccCch-hhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccC
Confidence 559999999988 4444668888887653 6888889999999998887765 3444 4555
Q ss_pred hhhhcccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 217 AEEYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLH 296 (868)
Q Consensus 217 a~~~~s~~~~~k~lg~g~~~g~vsid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~ 296 (868)
++|||...++-.+|- ++..|...+. ++.++...++.+++++..+-.+ +..+...+ .+++.
T Consensus 654 ~lTgGy~D~krsrLe--------~~k~~~~~~~-------~~~~l~~~L~~~r~~i~~~~~~----i~q~~~~~-qk~e~ 713 (1200)
T KOG0964|consen 654 VLTGGYEDQKRSRLE--------LLKNVNESRS-------ELKELQESLDEVRNEIEDIDQK----IDQLNNNM-QKVEN 713 (1200)
T ss_pred CccccchhhhhhHHH--------HHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHh
Confidence 666555332211110 1122333333 3444444444444444333222 33344444 33555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (868)
Q Consensus 297 QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe 351 (868)
+........+.+...+..+...+..++..+.-....|..+...+..+..+...++
T Consensus 714 ~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e 768 (1200)
T KOG0964|consen 714 DRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFE 768 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5555555555555555555555555555444444444444444444444443333
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=99.05 E-value=8.1e-06 Score=101.95 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=4.5
Q ss_pred cccccCC
Q 002902 26 KVNVNAS 32 (868)
Q Consensus 26 ~~~~~~~ 32 (868)
++|++-|
T Consensus 24 g~~~i~G 30 (880)
T PRK02224 24 GVTVIHG 30 (880)
T ss_pred CeEEEEC
Confidence 5777655
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.02 E-value=0.00019 Score=84.05 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 471 LENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 471 lE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
...+|..|..++......|.+-......|+.+|.+
T Consensus 369 ~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 369 DKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555556666644
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.01 E-value=1.3e-05 Score=102.90 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=35.7
Q ss_pred EEecCCceEeccCCCCCceeeCCCCC--cccceeEEeeeccCCCCCCCCCCCceEEEEe-CCcCCe---eeCCeeccC
Q 002902 98 ILLTADEHCIGRLVDDAHFQIDSNAV--SANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGT---YVNCERFKK 169 (868)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~~I--Sr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D-~StNGT---fVNg~ki~k 169 (868)
|.|....+...|.....|+++....- +..+|.+...-. +.++..+ ....-|.+.. +..+|. ||||.++..
T Consensus 46 fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V~l~fd-N~d~~~~-~~~~ei~v~Rri~r~g~S~Y~INg~~~~~ 121 (1163)
T COG1196 46 FVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEVELTFD-NSDNTLP-LEYEEISVTRRIYRDGESEYYINGEKVRL 121 (1163)
T ss_pred HHhCcchhhhhhccCCcceeeCCCCCCCCCCceEEEEEEe-CCCCcCC-cccceEEEEEEEEEcCCcEEEECCcEeeH
Confidence 45555557788888777888876543 224565543221 1122211 1111233333 233454 788887654
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.01 E-value=9e-06 Score=100.04 Aligned_cols=134 Identities=17% Similarity=0.264 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 002902 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR-------R 516 (868)
Q Consensus 444 Ekkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~-------r 516 (868)
+..++.+.+.|.+++..+..++.-+.++++++..|+..+-..+.....+......+..+.-++..+|+.+.. +
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~e 778 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRE 778 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 556666666777777776666666666666666665554444322222222222222222223333333322 1
Q ss_pred HHHHHHHH--HHHHHHHHHhhchHHHHHHHHHHHHHHH-----------HHHhhhHHHHhhhcccccccccCCCC
Q 002902 517 LKAARERI--MLRETQLRAFYSTTEEISVLFARQQEQL-----------KAMQKTLEDEENYENTSVDIDLCVPD 578 (868)
Q Consensus 517 Lq~erErL--q~reqQlkae~ek~EEi~e~~k~~~~qL-----------r~LQ~eLE~E~r~rs~a~~~dlnele 578 (868)
|+-+-.-+ ...++|.+..+.++.+...++..-..++ +.+|..|++ +++|+.++++++.+..
T Consensus 779 Lssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~~~k~lq~~lea-e~~~~~~~ktq~~e~~ 852 (1317)
T KOG0612|consen 779 LKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWGQMKELQDQLEA-EQCFSSLMKTQIIEDR 852 (1317)
T ss_pred hhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH-HHHHHHHHHhhhhhhh
Confidence 21111111 1224444445555555555555444455 459999999 9999999999998755
No 25
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.00 E-value=7.6e-10 Score=112.58 Aligned_cols=73 Identities=37% Similarity=0.578 Sum_probs=63.5
Q ss_pred EEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCcccc
Q 002902 98 ILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNI 176 (868)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L 176 (868)
+.+....++|||++++ +++|++..|||.||.|++... .+||+|+ |+|||||||.++.. .+.|
T Consensus 84 ~~~~~~~~tigr~~~~-~i~~~~~~vSR~Ha~l~~~~~-------------~~~~~d~~S~nGt~vn~~~v~~---~~~l 146 (191)
T COG1716 84 IVLGEPVTTIGRDPDN-DIVLDDDVVSRRHAELRREGN-------------EVFLEDLGSTNGTYVNGEKVRQ---RVLL 146 (191)
T ss_pred cccccceEEeccCCCC-CEEcCCCccccceEEEEEeCC-------------ceEEEECCCCcceEECCeEccC---cEEc
Confidence 4444558999998887 999999999999999999762 5899998 88999999999985 4789
Q ss_pred CCCCEEEeccC
Q 002902 177 DHGDIISFAAP 187 (868)
Q Consensus 177 ~~GD~I~~~~~ 187 (868)
.+||+|.|+..
T Consensus 147 ~~gd~i~i~~~ 157 (191)
T COG1716 147 QDGDVIRLGGT 157 (191)
T ss_pred CCCCEEEECcc
Confidence 99999999953
No 26
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.97 E-value=9.7e-06 Score=96.65 Aligned_cols=283 Identities=18% Similarity=0.188 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---H
Q 002902 289 SVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE---R 365 (868)
Q Consensus 289 ~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEE---r 365 (868)
+.+.++-.+..+|+.+|-+.++...++.+.+.++..++.++...++-+.-...=++.....|+.++.-++..+++- .
T Consensus 269 EfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 269 EFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888889999999999999999999999998888888877666666666666667777777777766662 2
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHH
Q 002902 366 NLRRVDRENAEADLK-------AAVQKSQLETQEKLKRLSDAASRRELEQQE----VINKLQIAEKQSSLQVESLKLKLD 434 (868)
Q Consensus 366 ~~~~EElEe~~~eLq-------~qL~kl~~el~eerkk~eee~~~~~EElee----~l~KLeE~EKK~r~elEdL~~eLE 434 (868)
..++.|.++.-.+-+ .+|+.-|..+.+.. -+.+++-. ...|+.....++..+++.|.+-.+
T Consensus 349 EILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal--------VrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE 420 (1243)
T KOG0971|consen 349 EILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL--------VRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKE 420 (1243)
T ss_pred HHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH--------HHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555444311100 12222222121111 12222211 122233333344555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 002902 435 ETRERLVTSDNKVRLLETQVCK---EQNVSASWKKRVEELENEIKKLREELESEKA---AREVAWAKVSGLELDILAATR 508 (868)
Q Consensus 435 ~~ra~~~~LEkkqr~LE~qLeE---Ek~~~~~lqkel~elE~eIreLeeELe~e~~---e~eel~d~i~~Le~ELeka~r 508 (868)
.+...+..+|..+..|..++.- ....+.+|..+--+++.+++.|++++..+.. -.+.+.+.-+.|+.+|.+-+.
T Consensus 421 ~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld 500 (1243)
T KOG0971|consen 421 RLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELD 500 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555555543 2334444555555667777777776665542 233333444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHH--------------------hhhccc
Q 002902 509 DLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDE--------------------ENYENT 568 (868)
Q Consensus 509 eLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E--------------------~r~rs~ 568 (868)
.+..-+.+|+.+++..+..+--...-+-+|++.-.+...+.+.+++-+.+++.+ .|.++.
T Consensus 501 ~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~fa~skayar 580 (1243)
T KOG0971|consen 501 MAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKFAESKAYAR 580 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHHH
Confidence 555555566555555444433333344556666555555555555555554443 345556
Q ss_pred ccccccCCCCC
Q 002902 569 SVDIDLCVPDG 579 (868)
Q Consensus 569 a~~~dlnele~ 579 (868)
+++.||+-+|.
T Consensus 581 aie~QlrqiEv 591 (1243)
T KOG0971|consen 581 AIEMQLRQIEV 591 (1243)
T ss_pred HHHHHHHHHHH
Confidence 66777777664
No 27
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=4e-05 Score=99.71 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 295 LHQLKVLRDMLDAKQKELAEIS--RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (868)
Q Consensus 295 E~QLeELq~kLeE~ek~l~el~--~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~ 359 (868)
..++..++.+++.++..+.... ..+..++.++..+...+..+...+..+.....+++.+|..|+.
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333211 2345566666666666666666666666666666666666633
No 28
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.91 E-value=1.7e-09 Score=87.34 Aligned_cols=50 Identities=34% Similarity=0.428 Sum_probs=43.6
Q ss_pred eEeccCC-CCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCC-cCCeeeCCeec
Q 002902 105 HCIGRLV-DDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTS-TNGTYVNCERF 167 (868)
Q Consensus 105 ~~IGR~~-~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~S-tNGTfVNg~ki 167 (868)
++|||.+ .| +++|+++.||+.||.|+++.. ..|||.|++ +|||||||.+|
T Consensus 1 ~~iGr~~~~~-~i~~~~~~vs~~H~~i~~~~~------------~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDC-DIQLPGPSISRRHAEIVYDGG------------GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCC-CEEeCCCCcchhHcEEEECCC------------CeEEEEECCCCCCeeECCEEC
Confidence 4799999 66 999999999999999998652 149999995 89999999875
No 29
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.1e-05 Score=97.48 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=28.0
Q ss_pred CcCCeeeCCeeccCCCCc-ccc-----CCCCEEEec-----cCCCCCceEEEEEeeccCCCCc
Q 002902 156 STNGTYVNCERFKKNSSE-VNI-----DHGDIISFA-----APPQHDLAFAFVFRDVSRSTPT 207 (868)
Q Consensus 156 StNGTfVNg~ki~k~~~~-~~L-----~~GD~I~~~-----~~~~~~~~f~fvf~d~~~~~~~ 207 (868)
..|-|.||.++|..+... .++ .-.|-+.++ +++...+++-|||+.+++.+.+
T Consensus 569 ~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~ 631 (1174)
T KOG0933|consen 569 RRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFGSTLVCDSL 631 (1174)
T ss_pred cceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhCceEEecCH
Confidence 456777777777651110 000 112222222 2333345888999999887655
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.90 E-value=3.5e-05 Score=84.92 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 249 RSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKES-------VSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (868)
Q Consensus 249 ~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~-------i~KklE~QLeELq~kLeE~ek~l~el~~~k~k 321 (868)
.++..|...+..++..+..|+.+++.+... +..+... +...|+.+|.++...++........+...+..
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~----i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESE----IEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence 345667788888888888888887666555 4444443 34567777777777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
+..++.++..+++.....+..+... +..|.+.++++.
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~e-------l~~lrk~ld~~~ 116 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEE-------LESLRKDLDEET 116 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhhhhhhhhhh
Confidence 6666666666666665555544444 444555555433
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.90 E-value=0.0005 Score=80.60 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002902 247 LQRSNTELRKQLESQVLEIDKLRNEN 272 (868)
Q Consensus 247 LE~En~eLr~qLEe~~~ei~~Lr~ev 272 (868)
|+.++.....+.+++......|+.++
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~ 166 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEV 166 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 32
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.88 E-value=4e-09 Score=123.16 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=72.7
Q ss_pred CCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCccccCCCC
Q 002902 102 ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGD 180 (868)
Q Consensus 102 ~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L~~GD 180 (868)
...|+|||-..| |+.+.||.|||.||.|.+... +.++. -.+....|||.|+ ||.|||+|-.|+.+ ..+..++.|+
T Consensus 176 ~~~~~fgr~~~c-D~~~eHpsISr~h~vlQy~~~-~~~~p-~~s~~~g~~i~dlgsThgt~~NK~rvpp-k~yir~~Vg~ 251 (793)
T KOG1881|consen 176 AAACLFGRLGGC-DVALEHPSISRFHAVLQYKAS-GPDDP-CASNGEGWYIYDLGSTHGTFLNKDRVPP-KVYIRDRVGH 251 (793)
T ss_pred ceeEEecccCCC-ccccccCcccccceeeeccCC-CCCcc-ccCCCCceEEeeccccccceeccccCCC-cchhhhhHHH
Confidence 356899999987 999999999999999988764 22211 0122346999998 99999999999999 7888999999
Q ss_pred EEEeccCCCCCceEEEEEeec
Q 002902 181 IISFAAPPQHDLAFAFVFRDV 201 (868)
Q Consensus 181 ~I~~~~~~~~~~~f~fvf~d~ 201 (868)
++.||.. .|.|+|.-.
T Consensus 252 v~~fggs-----Trl~i~Qgp 267 (793)
T KOG1881|consen 252 VARFGGS-----TRLYIFQGP 267 (793)
T ss_pred HHHhcCc-----eEEEEeeCC
Confidence 9999964 466777654
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=4.1e-05 Score=99.67 Aligned_cols=45 Identities=4% Similarity=0.003 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhhhHHHHhhhcc
Q 002902 523 RIMLRETQLRAFY--STTEEISVLFARQQEQLKAMQKTLEDEENYEN 567 (868)
Q Consensus 523 rLq~reqQlkae~--ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs 567 (868)
+++..+++++.++ ..|..++.+++...-++.....-.++..+|..
T Consensus 1079 ~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~ 1125 (1311)
T TIGR00606 1079 GYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYK 1125 (1311)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444 33445555555544444444444444444444
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.00018 Score=89.89 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=4.2
Q ss_pred ccceeEEee
Q 002902 125 ANHCKIYRK 133 (868)
Q Consensus 125 r~Hc~I~~~ 133 (868)
+.+++|.|.
T Consensus 81 ~~~~~i~R~ 89 (880)
T PRK03918 81 GRKYRIVRS 89 (880)
T ss_pred CeEEEEEEE
Confidence 344455443
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.80 E-value=3.9e-05 Score=89.56 Aligned_cols=148 Identities=20% Similarity=0.281 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 248 QRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------SISYLHQLKVLRDMLDAKQKELAEISRISA 320 (868)
Q Consensus 248 E~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i-------~KklE~QLeELq~kLeE~ek~l~el~~~k~ 320 (868)
..++..|..+|..++..+.-|+.+++.+.. .+..++... .-.|+..+..+..-+++..+.+..+...+.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~----di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~ 116 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEH----DINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999888755544 466666555 447899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002902 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDA 400 (868)
Q Consensus 321 kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee 400 (868)
+|+.++++|..++......+......+......+.+++.++.--... ..-+++....|..++.++..++...++.+..+
T Consensus 117 kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr-~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 117 KLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRR-IKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999998888877777776666666666655443322 22233445556666667777776666666544
No 36
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.79 E-value=1.2e-08 Score=113.98 Aligned_cols=75 Identities=32% Similarity=0.457 Sum_probs=64.1
Q ss_pred EEecCCceEeccCCCCCceeeCCC--CCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeCCeeccCCCCccc
Q 002902 98 ILLTADEHCIGRLVDDAHFQIDSN--AVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVN 175 (868)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~--~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~ 175 (868)
..+..+..+|||+++| |..|+|+ .||+.||+|.+... .|||.|.|.|||||||-.+..+..-..
T Consensus 21 ~~f~~~~g~IGrs~dc-dW~i~D~~~~VS~~Hc~I~~~dg-------------~f~L~DtS~g~l~VNgs~~~~g~~~~R 86 (430)
T COG3456 21 KLFDRGGGVIGRSPDC-DWQIDDPERFVSKQHCTISYRDG-------------GFCLTDTSNGGLLVNGSDLPLGEGSAR 86 (430)
T ss_pred hhhhcCCcccccCCCC-CccccCcccccchhheEEEecCC-------------eEEEEecCCCceeecccccCCCCCccc
Confidence 3455788999999998 9999987 79999999987752 499999999999999999877333479
Q ss_pred cCCCCEEEecc
Q 002902 176 IDHGDIISFAA 186 (868)
Q Consensus 176 L~~GD~I~~~~ 186 (868)
|..||+|.||.
T Consensus 87 LqqGd~i~iG~ 97 (430)
T COG3456 87 LQQGDEILIGR 97 (430)
T ss_pred cccCCEEeecc
Confidence 99999999993
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.00053 Score=85.79 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=17.6
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 002902 534 FYSTTEEISVLFARQQEQLKAMQKTLEDEE 563 (868)
Q Consensus 534 e~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~ 563 (868)
.+..+.++......+...+..|...|+.-.
T Consensus 523 ~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~ 552 (880)
T PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552 (880)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 335555566566666666666666666544
No 38
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.72 E-value=0.00014 Score=85.96 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=59.9
Q ss_pred HHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 417 IAEKQSSLQV---ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAW 493 (868)
Q Consensus 417 E~EKK~r~el---EdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~ 493 (868)
++++++..+. +-++.....++++.+.++.--+.++.++.+|+++.+.|..++...+..+++++++|+.+++.+..+.
T Consensus 232 ~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 232 KEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred HHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555553 4555555567888888888888899999999999999999999999999999999999987554433
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.72 E-value=2.4e-05 Score=83.59 Aligned_cols=210 Identities=16% Similarity=0.262 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE 371 (868)
..+..++++...++..+...+........+.+.++..|+.++..++..+..+...+......+.++...+++..+.++.-
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778888888888888888888888888888888888888777777777777777777776644332111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002902 372 ------RENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDN 445 (868)
Q Consensus 372 ------lEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEk 445 (868)
.++++..|+.++..+...+.+.-.+|. +......- +...|+.+..+++.+...+..|+.
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~-E~~rkl~~--------------~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYE-EVERKLKV--------------LEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------------HHHHHHHHHHHHhhhchhHHHHHH
Confidence 222233333444433333333222222 11111111 122234444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 446 KVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 516 (868)
Q Consensus 446 kqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~r 516 (868)
.++.+...|........++......++.+|..|...|......++.+...+..|+.+|..+...|...+..
T Consensus 149 el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 149 ELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555556666666666666666666666666666666666666555555555444
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.70 E-value=0.00058 Score=83.63 Aligned_cols=206 Identities=16% Similarity=0.220 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--
Q 002902 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRV-- 370 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~E-- 370 (868)
.+..+..+++..++.+...+.........|++++..|..+|+.....+......+..++....-+...+.+-+..+.-
T Consensus 312 ~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e 391 (775)
T PF10174_consen 312 TLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKE 391 (775)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777788888888888888888888888888888877777777666666655555555543321100
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHH
Q 002902 371 ----DRENAEADLKAAVQKSQLETQEKLKRLS------------DAASRRELEQQEVINKLQIA----EKQSSLQVESLK 430 (868)
Q Consensus 371 ----ElEe~~~eLq~qL~kl~~el~eerkk~e------------ee~~~~~EElee~l~KLeE~----EKK~r~elEdL~ 430 (868)
.+...++.|...+..=..++...+.++. +.+...+.+++..+.+|.+. ++....+++.++
T Consensus 392 ~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~ 471 (775)
T PF10174_consen 392 RKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQ 471 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111222222222211111222222222 11111222222222222211 334445567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 431 LKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG 498 (868)
Q Consensus 431 ~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~ 498 (868)
.++..++..+..|+++....+.+|..-+.....+.........+|..|.-++++.+..+..+...+..
T Consensus 472 ~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 472 KELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 77777777777777777777777766666666665555555556666666665555555555555544
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.69 E-value=0.00054 Score=88.67 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
+..+...+...+.+.......+..++.+
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 498 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAE 498 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333333333
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00016 Score=85.48 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 273 RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (868)
Q Consensus 273 k~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~ 348 (868)
+.-++|.|+|++.-.+.- ++|+.|-.=-..+-++.+|.+...++.+.+|+.+ ++++=....+.++..++.
T Consensus 357 kkererqEqErk~qlEle-kqLerQReiE~qrEEerkkeie~rEaar~ElEkq-----RqlewErar~qem~~Qk~ 426 (1118)
T KOG1029|consen 357 KKERERQEQERKAQLELE-KQLERQREIERQREEERKKEIERREAAREELEKQ-----RQLEWERARRQEMLNQKN 426 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhh
Confidence 444555555554443333 5555554433444445556666666666666552 344444444444444443
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.67 E-value=0.0011 Score=85.99 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=5.8
Q ss_pred hhhhccccCCCC
Q 002902 60 FWVAGTYAAQPL 71 (868)
Q Consensus 60 ~~~a~~~a~~p~ 71 (868)
..++..|-..|.
T Consensus 35 Rlip~FYGa~p~ 46 (1201)
T PF12128_consen 35 RLIPFFYGADPS 46 (1201)
T ss_pred HHHHHhcCCCcc
Confidence 444555554443
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00011 Score=86.97 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=106.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002902 355 DELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLD 434 (868)
Q Consensus 355 ~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE 434 (868)
.+++++-|++++...+.+|-++.+|+++.+ +.=++.+..+.+.+..++.+ .+-.+....+.+..+++.|+.++.
T Consensus 381 ReiE~qrEEerkkeie~rEaar~ElEkqRq-----lewErar~qem~~Qk~reqe-~iv~~nak~~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 381 REIERQREEERKKEIERREAAREELEKQRQ-----LEWERARRQEMLNQKNREQE-WIVYLNAKKKQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777666666666666543221 11223444423333333333 344466666677777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Q 002902 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL----------DIL 504 (868)
Q Consensus 435 ~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~----------ELe 504 (868)
.+...+.+.+-++......++.....+.....++..|+++|.++++.|..+-.+++++..++..... +|+
T Consensus 455 qls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~ 534 (1118)
T KOG1029|consen 455 QLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELE 534 (1118)
T ss_pred HHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHH
Confidence 8888887777666666666677677777777888888888888888888888888888888876544 455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002902 505 AATRDLDFERRRLKAARERI 524 (868)
Q Consensus 505 ka~reLE~Ek~rLq~erErL 524 (868)
++.+.-+.-+++++.+++.|
T Consensus 535 aa~~~ke~irq~ikdqldel 554 (1118)
T KOG1029|consen 535 AARRKKELIRQAIKDQLDEL 554 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554433
No 45
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=0.0002 Score=87.71 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=66.9
Q ss_pred eEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCc-CCeeeCCeeccCCCCc-cccCCCCEE
Q 002902 105 HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTST-NGTYVNCERFKKNSSE-VNIDHGDII 182 (868)
Q Consensus 105 ~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~St-NGTfVNg~ki~k~~~~-~~L~~GD~I 182 (868)
..+|++-+. |+++. --.+.||+- ||++.+. --||||...|.-+... ..-.+|+ +
T Consensus 525 ~~Lgk~~da--IiVdt-e~ta~~CI~--------------------ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g-~ 580 (1141)
T KOG0018|consen 525 VVLGKNMDA--IIVDT-EATARDCIQ--------------------YLKEQRLEPMTFLPLDSIRVKPVNEKLRELGG-V 580 (1141)
T ss_pred HHHhcccce--EEecc-HHHHHHHHH--------------------HHHHhccCCccccchhhhhcCcccccccCcCC-e
Confidence 466776443 55543 335677743 4444443 5688888776442111 1225666 4
Q ss_pred Eecc-----CCCCCceEEEEEeeccCCCCcc------------------hhHH-hhhhhhhhcccccccccccccCCCCC
Q 002902 183 SFAA-----PPQHDLAFAFVFRDVSRSTPTM------------------EGAA-AKRKAEEYVSDNKRLKGIGICSPDGP 238 (868)
Q Consensus 183 ~~~~-----~~~~~~~f~fvf~d~~~~~~~~------------------~g~~-~K~~a~~~~s~~~~~k~lg~g~~~g~ 238 (868)
.+++ +|.+..++.|+++..++-+.+. +|.+ -|+|.|+||+ .|.
T Consensus 581 rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~-------------s~~ 647 (1141)
T KOG0018|consen 581 RLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGS-------------SGA 647 (1141)
T ss_pred EEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEEeeeeEEeccceecCCc-------------cCC
Confidence 4443 3445567889999998877654 2222 2334444443 221
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHH
Q 002902 239 LSLD--DFRSLQRSNTELRKQLESQVL 263 (868)
Q Consensus 239 vsid--~Vr~LE~En~eLr~qLEe~~~ 263 (868)
- |+ ++..|......|..+|.+...
T Consensus 648 ~-wdek~~~~L~~~k~rl~eel~ei~~ 673 (1141)
T KOG0018|consen 648 K-WDEKEVDQLKEKKERLLEELKEIQK 673 (1141)
T ss_pred C-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 43 377777777777777666654
No 46
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.57 E-value=0.0037 Score=74.55 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=12.2
Q ss_pred cchhHHHhhhhccChhhhhhcCCCCC
Q 002902 801 HDRQALCEMIGIVTPELKVQFGGAVD 826 (868)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (868)
.+|+||| +++...+++|-.++-
T Consensus 908 aerwA~C----Lq~aqk~rmmlnsk~ 929 (1265)
T KOG0976|consen 908 AERWALC----LQDAQKVRMMLNSKH 929 (1265)
T ss_pred HHHHHHH----HHHHHHHHHHhccCC
Confidence 3566664 456666666554443
No 47
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.57 E-value=0.0028 Score=82.38 Aligned_cols=107 Identities=15% Similarity=0.252 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQ----LESQVLEIDKLRNENRVVVERHEKEMKEM---KESVSISYLHQLKVLRDMLDAKQKELAEI 315 (868)
Q Consensus 243 ~Vr~LE~En~eLr~q----LEe~~~ei~~Lr~evk~i~er~E~El~El---~E~i~KklE~QLeELq~kLeE~ek~l~el 315 (868)
.|+.|+..+..+... +..+...+..++.++..|+....+..... .+++ +.+...|.-++...+.+..+...+
T Consensus 637 ~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekl-e~L~~~ie~~K~e~~tL~er~~~l 715 (1822)
T KOG4674|consen 637 RLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKL-ENLEKNLELTKEEVETLEERNKNL 715 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554433222 22234445556666555554433322222 2222 344444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (868)
Q Consensus 316 ~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kL 350 (868)
...+.+-+..+..+...|-.+...+..+.-.+..|
T Consensus 716 ~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~L 750 (1822)
T KOG4674|consen 716 QSTISKQEQTVHTLSQELLSANEKLEKLEAELSNL 750 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55555555555555555555555555444444433
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.57 E-value=0.0032 Score=75.61 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002902 254 LRKQLESQVLEIDKLRNENRVVVERHEKEMKEM 286 (868)
Q Consensus 254 Lr~qLEe~~~ei~~Lr~evk~i~er~E~El~El 286 (868)
+...+..+...-..-+.++..++.+|...++.+
T Consensus 124 i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~l 156 (569)
T PRK04778 124 ILEELQELLESEEKNREEVEQLKDLYRELRKSL 156 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444433333
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.56 E-value=0.0033 Score=82.32 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH----h
Q 002902 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATR------DLDFERRRLKAARERIMLRETQLRA----F 534 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~r------eLE~Ek~rLq~erErLq~reqQlka----e 534 (868)
+....+.++++..+.+++......+..+..+...|..+|.++.. .+..-..+|..+.......-+++.. -
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~ 636 (1486)
T PRK04863 557 EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQL 636 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555544221 1122222233332211111111111 2
Q ss_pred hchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002902 535 YSTTEEISVLFARQQEQLKAMQKTLEDE 562 (868)
Q Consensus 535 ~ek~EEi~e~~k~~~~qLr~LQ~eLE~E 562 (868)
++.+.+.-..+.....++..|+.+++..
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~L~~~i~~l 664 (1486)
T PRK04863 637 LERERELTVERDELAARKQALDEEIERL 664 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2445555555555555666666666653
No 50
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.55 E-value=0.0048 Score=72.76 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhhccccc
Q 002902 506 ATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSV 570 (868)
Q Consensus 506 a~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a~ 570 (868)
+.++-++|..-|+-++-+|+..-.-+-.++-+.....+..+.-+..+-.|..+|++..+--++++
T Consensus 860 ll~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~L 924 (961)
T KOG4673|consen 860 LLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAAL 924 (961)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443344445566666666777777778888888888665555555
No 51
>PRK01156 chromosome segregation protein; Provisional
Probab=98.55 E-value=0.0043 Score=78.09 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=5.3
Q ss_pred cccccchhHH
Q 002902 797 TKWSHDRQAL 806 (868)
Q Consensus 797 ~~~~~~~~~~ 806 (868)
.-+||++..+
T Consensus 864 i~ish~~~~~ 873 (895)
T PRK01156 864 IMISHHRELL 873 (895)
T ss_pred EEEECchHHH
Confidence 3456666544
No 52
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=0.0022 Score=79.50 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=9.5
Q ss_pred HHHHHhhhHHHHhhhccccc
Q 002902 551 QLKAMQKTLEDEENYENTSV 570 (868)
Q Consensus 551 qLr~LQ~eLE~E~r~rs~a~ 570 (868)
++.++...|.. .++++..+
T Consensus 585 rveE~ks~~~~-~~s~~kVl 603 (1293)
T KOG0996|consen 585 RVEEAKSSLSS-SRSRNKVL 603 (1293)
T ss_pred HHHHHHHHHHh-hhhhhHHH
Confidence 44444444444 55555555
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.52 E-value=0.0045 Score=76.76 Aligned_cols=131 Identities=19% Similarity=0.289 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVA---WAKVSGLELD 502 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel---~d~i~~Le~E 502 (868)
+++|+.++++++..+..++...+..+..|++.+.....++..+..++.+++.++.+|.++....+.. .-.+..|..+
T Consensus 663 ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~e 742 (1074)
T KOG0250|consen 663 IEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLARE 742 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHH
Confidence 6788888888888777777777777777777777777777777777777777777666666520111 1123334444
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhH
Q 002902 503 ILA---ATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTL 559 (868)
Q Consensus 503 Lek---a~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eL 559 (868)
|.+ .+..++.....++...+.+..+.+.++..+ ...-..++....+|..|+.+|
T Consensus 743 i~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~---~~~~~~l~~e~~~l~~l~~el 799 (1074)
T KOG0250|consen 743 IKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYY---AAGREKLQGEISKLDALKEEL 799 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHH
Confidence 433 333333444455555666666655554332 233333444444444444444
No 54
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.52 E-value=0.0085 Score=73.44 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=17.9
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 002902 532 RAFYSTTEEISVLFARQQEQLKAMQKTLEDEE 563 (868)
Q Consensus 532 kae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~ 563 (868)
...|+..+-+.+..+.....|..|+++.|..+
T Consensus 567 Eq~~n~lE~~~~elkk~idaL~alrrhke~LE 598 (1195)
T KOG4643|consen 567 EQNNNDLELIHNELKKYIDALNALRRHKEKLE 598 (1195)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555556666666555544
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.52 E-value=0.0026 Score=78.10 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 247 LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRISAEQKH 324 (868)
Q Consensus 247 LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i--~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEs 324 (868)
+..++..-..++..+...+..+..+....+..|+....++...- .-.|...++.|..+|++....++.....+.+++.
T Consensus 292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe 371 (775)
T PF10174_consen 292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE 371 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444443444444444443333222 2356677777777777766666665555555555
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002902 325 E-------MEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 368 (868)
Q Consensus 325 E-------l~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~ 368 (868)
+ +.+|...+...+..+..|.+.+..|...+.+-.++|......+
T Consensus 372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERL 422 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5555555555555555555555555555555555555544333
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.49 E-value=0.00034 Score=74.76 Aligned_cols=60 Identities=32% Similarity=0.417 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 437 RERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (868)
Q Consensus 437 ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i 496 (868)
......++.+++.|..++.+.-.....+...+..|+.+|..|+.+|...+..|..+.+.+
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555566666666666666666666665555444443
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.47 E-value=0.0054 Score=80.38 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002902 408 QQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 443 (868)
Q Consensus 408 lee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~L 443 (868)
|+..+..+......+..++.++..++..++..+..+
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333
No 58
>PRK01156 chromosome segregation protein; Provisional
Probab=98.47 E-value=0.01 Score=74.86 Aligned_cols=30 Identities=7% Similarity=0.244 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 301 LRDMLDAKQKELAEISRISAEQKHEMEDLN 330 (868)
Q Consensus 301 Lq~kLeE~ek~l~el~~~k~kLEsEl~EL~ 330 (868)
+..+++++.+.+..+...+..+...+++|.
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 59
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.46 E-value=0.0035 Score=75.52 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=8.6
Q ss_pred hhHHHhhhhccChhhhhhcC
Q 002902 803 RQALCEMIGIVTPELKVQFG 822 (868)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~ 822 (868)
-+.|.+| =+|..+--.|
T Consensus 579 mqLL~ei---Qnpq~~p~L~ 595 (617)
T PF15070_consen 579 MQLLQEI---QNPQEHPGLG 595 (617)
T ss_pred HHHhHhc---CCcccCCCCC
Confidence 4555555 4565544433
No 60
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.46 E-value=0.0019 Score=80.34 Aligned_cols=223 Identities=18% Similarity=0.223 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR--- 368 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~--- 368 (868)
.-++.++.+...++.+.+..+..+.+.+.+++.+++++......+......+....+.+..+..++....++..+.+
T Consensus 490 ~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~ 569 (1317)
T KOG0612|consen 490 ALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHS 569 (1317)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhh
Confidence 34556666666667777666666777777777766666666666655555555555666666566665555544332
Q ss_pred -------HHHHH------HHHHHHH---HHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002902 369 -------RVDRE------NAEADLK---AAVQKSQLETQEKLKRL---SDAASRRELEQQEVINKLQIAEKQSSLQVESL 429 (868)
Q Consensus 369 -------~EElE------e~~~eLq---~qL~kl~~el~eerkk~---eee~~~~~EElee~l~KLeE~EKK~r~elEdL 429 (868)
..+++ +....++ ..+.+.+.++.....+. .........++++.+.-|++..+....++..+
T Consensus 570 ~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 570 KELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred hhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 11111 1111111 12222222222211111 11223333344444444554444444444333
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 430 KLKLDETRERLVTSDN--KVRLLETQVCKEQNVSASWKK-----RVEELENEIKKLREELESEKAAREVAWAKVSGLELD 502 (868)
Q Consensus 430 ~~eLE~~ra~~~~LEk--kqr~LE~qLeEEk~~~~~lqk-----el~elE~eIreLeeELe~e~~e~eel~d~i~~Le~E 502 (868)
+......++.+.++++ -...++..+.-++....+..+ ++...+.++.++...|..++.+|..+......++.+
T Consensus 650 ~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e 729 (1317)
T KOG0612|consen 650 EELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAE 729 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 3322223444444444 223333333333333222222 344446677777777888888888777777777777
Q ss_pred HHHHHHHHHHHH
Q 002902 503 ILAATRDLDFER 514 (868)
Q Consensus 503 Leka~reLE~Ek 514 (868)
++.++..|-.-.
T Consensus 730 ~e~L~~d~~~~~ 741 (1317)
T KOG0612|consen 730 LEYLSNDYKQSQ 741 (1317)
T ss_pred HHHHhhhhhhhc
Confidence 766555555444
No 61
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.45 E-value=0.0089 Score=70.58 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002902 398 SDAASRRELEQQEVINKLQ----IAEKQSSLQVESLKLKLDETRERLVT 442 (868)
Q Consensus 398 eee~~~~~EElee~l~KLe----E~EKK~r~elEdL~~eLE~~ra~~~~ 442 (868)
+..+.++..+|...+.+.+ .++--+|.++++|+++|......+..
T Consensus 582 ~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 582 ESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666555543 12235556666777776654433333
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.44 E-value=0.00021 Score=86.96 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~k 321 (868)
+.+.+|+.++.+|+.+|...+..-..||.++..+..- .+.+..+|..++.+.+.++..+..+...+.+
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~------------Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNN------------ERSLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888888888888888777666676664322111 1234444555555555444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANE 345 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k 345 (868)
=...+..|+.+|.++......+++
T Consensus 486 DKq~l~~LEkrL~eE~~~R~~lEk 509 (697)
T PF09726_consen 486 DKQSLQQLEKRLAEERRQRASLEK 509 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333
No 63
>PRK11637 AmiB activator; Provisional
Probab=98.41 E-value=0.00054 Score=79.23 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=14.2
Q ss_pred hhhhhhhhhhhcccccccccCCCCCCC
Q 002902 733 TIRTADLLASEVAGSWACSTAPSVHGE 759 (868)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (868)
.+..-|.|+. .|+=.++++|.+|=|
T Consensus 388 ~V~~G~~ig~--~g~~g~~~~~~l~fe 412 (428)
T PRK11637 388 QVRAGQPIAL--VGSSGGQGRPSLYFE 412 (428)
T ss_pred EECCCCeEEe--ecCCCCCCCCeEEEE
Confidence 4555555542 244445678887754
No 64
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.38 E-value=0.014 Score=69.45 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVA 492 (868)
Q Consensus 420 KK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel 492 (868)
.....+|+.++..|......+..+......|...|...+.-+..++.........+..|..+|...+.+++-+
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666666666666666666666666665555433
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.38 E-value=0.0014 Score=80.42 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 430 KLKLDETRERLVTSDNKVRLLETQVCKEQNVSA 462 (868)
Q Consensus 430 ~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~ 462 (868)
+.+.......+..+-.+..+|+..|++.|.+..
T Consensus 1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444555555555444443
No 66
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=0.0043 Score=75.69 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 277 ERHEKEMKEMKESVSISYLHQLKV-------LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS 349 (868)
Q Consensus 277 er~E~El~El~E~i~KklE~QLeE-------Lq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~k 349 (868)
..|..|+.++..++ -+++.+... +...+.+.+.....+...+.+|++.+.-|....+.+...-.++.+.+-.
T Consensus 226 tiYdrEl~E~~~~l-~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~ 304 (1200)
T KOG0964|consen 226 TIYDRELNEINGEL-ERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTK 304 (1200)
T ss_pred hhhhhHHHHHHHHH-HHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34677777777666 223333222 2333445555666666677777777777777777777777777777888
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 002902 350 QKVTIDELKTQLDEERNLR 368 (868)
Q Consensus 350 Le~qI~ELq~qLEEEr~~~ 368 (868)
|+-.+++|+.++.-...++
T Consensus 305 lel~~kdlq~~i~~n~q~r 323 (1200)
T KOG0964|consen 305 LELKIKDLQDQITGNEQQR 323 (1200)
T ss_pred hhhhhHHHHHHhhhhhhhh
Confidence 8888889988887766544
No 67
>PRK11637 AmiB activator; Provisional
Probab=98.35 E-value=0.00095 Score=77.24 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 434 DETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKL 478 (868)
Q Consensus 434 E~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreL 478 (868)
..+......++..+..|+....+-+..+..+...+...++++.+|
T Consensus 194 ~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 194 SQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444333
No 68
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.33 E-value=0.026 Score=73.96 Aligned_cols=278 Identities=17% Similarity=0.193 Sum_probs=152.9
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 240 SLDD-FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 318 (868)
Q Consensus 240 sid~-Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~ 318 (868)
..++ ...+++++..|..++..+...-+.++.++..++.. +..+.... .++..++..+...+..+.+...++...
T Consensus 49 ~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~----L~~~~~~~-~~l~~~~~~~~~~~~~l~~~~se~~~q 123 (1822)
T KOG4674|consen 49 NHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNE----LEQLSSER-SNLSWEIDALKLENSQLRRAKSELQEQ 123 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhH-HHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3455 77778888888888888877777777776666655 33333333 556677777777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHH-------HHHHHHHHH
Q 002902 319 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNL------RRVDRENAE-------ADLKAAVQK 385 (868)
Q Consensus 319 k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~------~~EElEe~~-------~eLq~qL~k 385 (868)
+..|...+..+.++++.....+..+..+++++...+.+++..+.+-... ..+-++... .-|.+.+..
T Consensus 124 kr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~ 203 (1822)
T KOG4674|consen 124 KRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSK 203 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888888888888888888888888888888888888877777663311 111122222 233344444
Q ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 002902 386 SQLETQEKLKRLSD---AASRRELEQQEVINKLQIAE-------KQSSLQVESLKLKLDETRERLVTSD----NKVRLLE 451 (868)
Q Consensus 386 l~~el~eerkk~ee---e~~~~~EElee~l~KLeE~E-------KK~r~elEdL~~eLE~~ra~~~~LE----kkqr~LE 451 (868)
.+.++...+.+... .+......+......+++.. ..+..-++.+..++..++.+....+ +.+-.-.
T Consensus 204 ~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~ 283 (1822)
T KOG4674|consen 204 VNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQK 283 (1822)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44444333333111 11111111111111111111 2222223344444444444333332 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 452 TQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 522 (868)
Q Consensus 452 ~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erE 522 (868)
+..+-|+.....+..++.++...|..+..-|+....++.+..+.+..++.-+.+....|+.+..+|...++
T Consensus 284 kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~ 354 (1822)
T KOG4674|consen 284 KLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELE 354 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333555555555555555555555555555555555555555555555555555555555555554444
No 69
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.32 E-value=0.0043 Score=75.00 Aligned_cols=86 Identities=20% Similarity=0.285 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 253 ELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR 332 (868)
Q Consensus 253 eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~q 332 (868)
+||.|+..+.+++..+|..-..-+.+ |.| |+...-++..+.+-+.++.....+|.++
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~K-------------------l~E----lekmkiqleqlqEfkSkim~qqa~Lqre 284 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAK-------------------LKE----LEKMKIQLEQLQEFKSKIMEQQADLQRE 284 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHH-------------------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777666666666665552222111 111 3344444555556666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 333 LSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 333 Le~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
|..+.....++..-..+.+..+.++...+
T Consensus 285 l~raR~e~keaqe~ke~~k~emad~ad~i 313 (1243)
T KOG0971|consen 285 LKRARKEAKEAQEAKERYKEEMADTADAI 313 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655544433
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.32 E-value=0.019 Score=68.29 Aligned_cols=66 Identities=27% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Q 002902 470 ELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR---LKAARERIMLRETQLRAFY 535 (868)
Q Consensus 470 elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~r---Lq~erErLq~reqQlkae~ 535 (868)
.|..++...+.++..++.....+...+..|..+|.+++.+|+..... .+.....|...++++..+.
T Consensus 313 sL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea 381 (522)
T PF05701_consen 313 SLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA 381 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444555555555555444332 2222334455555554444
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.30 E-value=0.007 Score=74.65 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 469 EELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 469 ~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
.....++.+|+++..++..+-..-++.+..|+.
T Consensus 1685 ~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~ 1717 (1758)
T KOG0994|consen 1685 QAARERAEQLRTEAEKLLGQANEKLDRLKDLEL 1717 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.29 E-value=0.022 Score=68.55 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Q 002902 539 EEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 539 EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
+.+-..|.....+++.|...|+.
T Consensus 444 ~~y~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 444 EDYLEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555666666666665
No 73
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.25 E-value=0.0016 Score=77.41 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
+.++.++.++..++.++......+..+...
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~ 203 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKN 203 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555555555555555544444433333
No 74
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.21 E-value=0.01 Score=73.84 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL-ESEKAAREVAWAKVSGLELDIL 504 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeEL-e~e~~e~eel~d~i~~Le~ELe 504 (868)
++....+++.+++.+.++.++.-+++..+.+-...+.+++..++.+++.|..++.++ ..+..++.+...++..|..+++
T Consensus 332 ~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve 411 (1074)
T KOG0250|consen 332 VDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE 411 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444555555555555555555555555555555555 4444455555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhhccccc
Q 002902 505 AATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSV 570 (868)
Q Consensus 505 ka~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a~ 570 (868)
++.. +..+|..+...+.... +..-+....+......+.++++..+.+|.+..+.++..|
T Consensus 412 k~e~----~~~~L~~e~~~~~~~~---~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkv 470 (1074)
T KOG0250|consen 412 KLEE----QINSLREELNEVKEKA---KEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKV 470 (1074)
T ss_pred HHHH----HHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 4322 1122211111111111 111122333445556666677777888877777777666
No 75
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.037 Score=68.20 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARER 523 (868)
Q Consensus 444 Ekkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erEr 523 (868)
+..-.-++.+|.+.+.....++.++..+..+++.++.+|.....+..+..........++..++...|..+.+
T Consensus 391 ~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~------- 463 (1174)
T KOG0933|consen 391 EDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKR------- 463 (1174)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3444566777777777777777777777777777777777666666655555555555555444444444444
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 002902 524 IMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEEN 564 (868)
Q Consensus 524 Lq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r 564 (868)
++-+.-....++...+.+..+...+..|.+.++..-.
T Consensus 464 ----l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 464 ----LQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLA 500 (1174)
T ss_pred ----HHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444577778888888877788888888777443
No 76
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.17 E-value=0.019 Score=70.00 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 434 DETRERLVTSDNKVRLLETQVCK--EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 434 E~~ra~~~~LEkkqr~LE~qLeE--Ek~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
..+...+..++.++..++++|.. ....+..+..++..++.++.+++.++......+..+.+.+..++++|.+
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555554433 1234444555555555555555555555555555555555555554443
No 77
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.16 E-value=0.03 Score=66.18 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=82.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 002902 423 SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNV--------SASWKKRVEELENEIKKLREELESEKA----ARE 490 (868)
Q Consensus 423 r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~--------~~~lqkel~elE~eIreLeeELe~e~~----e~e 490 (868)
..++.=+..+|+.++..+..++++.-.|..++...... +.+....+..++..|.+|..+++.+.. +++
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888889999999998888888877663332 223355566688888888888888876 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 002902 491 VAWAKVSGLELDILAATRDLDFERRRLKAA--RERIMLRETQLR 532 (868)
Q Consensus 491 el~d~i~~Le~ELeka~reLE~Ek~rLq~e--rErLq~reqQlk 532 (868)
.....|..|+.++.+++..++..+..|+.. .+.|.-+++-||
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 666778889999999999999998888777 446666666664
No 78
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.14 E-value=0.023 Score=62.22 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 300 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (868)
Q Consensus 300 ELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~ 338 (868)
++..+..++...+.+++..+.++....++++..+..+-.
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444333
No 79
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.12 E-value=0.026 Score=62.19 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL-AEISRISA 320 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l-~el~~~k~ 320 (868)
.++..|++++..|+.++.......+.|..+++.++.. --.++.+.+-.+..+ +.+..++.
T Consensus 27 ~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~-------------------sv~~~~~aEqEEE~isN~LlKkl~ 87 (310)
T PF09755_consen 27 KRIESLQQENRVLKRELETEKARCKHLQEENRALREA-------------------SVRIQAKAEQEEEFISNTLLKKLQ 87 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777777777777766666666665444443 112222222222222 23555566
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 321 EQKHEMEDLNDRLSASMQSC-TEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 321 kLEsEl~EL~~qLe~~e~~~-~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
.|..+-..|...+...+..+ ..|.+.+.++..+-.+|...|+.+.
T Consensus 88 ~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~Eq 133 (310)
T PF09755_consen 88 QLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQ 133 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66666666655555544433 4666666666665556666665544
No 80
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.12 E-value=0.041 Score=67.15 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~k 321 (868)
.+|..|+.++..++..+.....+.++|...+..++.- .. ..+.-++++...+.+++.+-..+=....+++.....
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~----~~-~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKE----CE-DLELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4455555555555555555555555554443222222 11 122224556666777766666666666666666666
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 322 QKHEMEDLNDR---LSASMQSCTEANEIMKSQKVTIDE 356 (868)
Q Consensus 322 LEsEl~EL~~q---Le~~e~~~~eL~k~l~kLe~qI~E 356 (868)
|+.++.-|..- ++.+.-.+..+..+..-+..++++
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555443 444444444555555544444444
No 81
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.052 Score=63.78 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 002902 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA----AREVAWAKVSGLELDILA 505 (868)
Q Consensus 435 ~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~----e~eel~d~i~~Le~ELek 505 (868)
........|+..+.++...+++-+.....++-++..++.++..++++-+.+.. +.+.+.+.+..+...+..
T Consensus 436 ~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~ 510 (581)
T KOG0995|consen 436 EAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNT 510 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555554444444333332 344444444444443333
No 82
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.06 E-value=4.1e-06 Score=89.94 Aligned_cols=87 Identities=26% Similarity=0.409 Sum_probs=72.1
Q ss_pred EEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCcccc
Q 002902 98 ILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNI 176 (868)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L 176 (868)
|.+.+..|+|||+..-|||+|++.++||.|+.+..-.. ..++||.|+ |+.||||-..||.+ ..++.+
T Consensus 33 ~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkh-----------l~~~~lidl~s~hgtf~g~~rL~~-~~p~~l 100 (337)
T KOG1880|consen 33 IIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKH-----------LSRIFLIDLGSTHGTFLGNERLEP-HKPVQL 100 (337)
T ss_pred HhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhc-----------cceEEEEEccCCcceeeeeeeecc-CCCccc
Confidence 45557789999999888999999999999998865442 137999999 99999999999999 788999
Q ss_pred CCCCEEEeccCCCCCceEEEEEeec
Q 002902 177 DHGDIISFAAPPQHDLAFAFVFRDV 201 (868)
Q Consensus 177 ~~GD~I~~~~~~~~~~~f~fvf~d~ 201 (868)
..|-.+.|+... -.|+|+.-
T Consensus 101 ~i~~~~~fgasT-----r~y~lr~k 120 (337)
T KOG1880|consen 101 EIGSTFHFGAST-----RIYLLREK 120 (337)
T ss_pred cCCceEEEeccc-----eeeeeecc
Confidence 999999999653 34666554
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.04 E-value=0.015 Score=69.20 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (868)
Q Consensus 295 E~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~ 359 (868)
...+.+++..+++....+..+...+..++.++.++...+......+.+++..+..++..+..++.
T Consensus 212 ~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~ 276 (562)
T PHA02562 212 GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQK 276 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444444444444444444444444444333
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.03 E-value=0.014 Score=66.82 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 443 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAA 506 (868)
Q Consensus 443 LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka 506 (868)
+..++.++...+.+-......+...+.+.++-..+|..++.......+++..+-..|..+|..+
T Consensus 180 iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~ 243 (420)
T COG4942 180 IAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASA 243 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444455555444444444444444444444333
No 85
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.00 E-value=0.077 Score=63.31 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAE---ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK-------SQKVTIDELKTQLD 362 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~e---l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~-------kLe~qI~ELq~qLE 362 (868)
.-+.+|++|..-|++..+-+.+ +......|+.--.+|..-|...+..+.+|...+. ....++.+|+.+|+
T Consensus 402 ~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE 481 (786)
T PF05483_consen 402 NKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELE 481 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555677777777766644333 2222222222222333334444444444443333 33455666666666
Q ss_pred HHH
Q 002902 363 EER 365 (868)
Q Consensus 363 EEr 365 (868)
.+.
T Consensus 482 ~Ek 484 (786)
T PF05483_consen 482 QEK 484 (786)
T ss_pred HHH
Confidence 543
No 86
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.00 E-value=0.076 Score=67.97 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=22.1
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHH
Q 002902 528 ETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 528 eqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
.+++..++...-.+.-..+.+...+.+++..|..
T Consensus 396 ~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~~ 429 (1109)
T PRK10929 396 LSGGDTLILELTKLKVANSQLEDALKEVNEATHR 429 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666667777766654
No 87
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.063 Score=61.47 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 299 eELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
+.|..+...+++...-.......|+....+.-..|+.+...+...+.+++.|+.++.+|..++..
T Consensus 298 ~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 298 KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 33333333444444444444444444444444445555555555555555555555555555543
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.96 E-value=0.011 Score=72.26 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 325 EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 325 El~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
+|..+....+.++..+..|...+++=++.|..|+++|.+|+
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444443
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.96 E-value=0.022 Score=65.18 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAA 506 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka 506 (868)
.+++.++..+.+-+....++.+.+...+.++.+ +...-..+...|.+++.++.++
T Consensus 196 ~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~e-------L~~~~~~L~~~Ias~e~~aA~~ 250 (420)
T COG4942 196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEE-------LRANESRLKNEIASAEAAAAKA 250 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433 3344444444555555555443
No 90
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.94 E-value=0.1 Score=62.66 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 464 WKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (868)
Q Consensus 464 lqkel~elE~eIreLeeELe~e~~e~eel~d~i 496 (868)
+.+++..++.++..+...+......|..+.+.+
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l 381 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEEL 381 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 333344444444444333333333333333333
No 91
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.91 E-value=0.001 Score=81.48 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=66.3
Q ss_pred eEEEecCCceEeccCCCC--CceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeCCeeccCCCCc
Q 002902 96 INILLTADEHCIGRLVDD--AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSE 173 (868)
Q Consensus 96 ~~i~L~~~~~~IGR~~~~--~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVNg~ki~k~~~~ 173 (868)
.-+.|..+.++|||.... .||+++...|=-.||.|.-.+. + .++.|.=.-.--|||||..|.. +
T Consensus 470 LlY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g-~----------~~vtl~p~e~aetyVNGk~v~e---p 535 (1221)
T KOG0245|consen 470 LLYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGG-N----------DVVTLEPCEDAETYVNGKLVTE---P 535 (1221)
T ss_pred EEEEeccCceecCCCCcccCCceEecchhhhhhceEEEecCC-C----------ceEEeccCCccceeEccEEcCC---c
Confidence 346677889999998743 5999999999999999987652 1 2455555555789999999976 6
Q ss_pred cccCCCCEEEeccCCCCCceEEEEEeec
Q 002902 174 VNIDHGDIISFAAPPQHDLAFAFVFRDV 201 (868)
Q Consensus 174 ~~L~~GD~I~~~~~~~~~~~f~fvf~d~ 201 (868)
..|++||.|.||. ..+|.|.+.
T Consensus 536 ~qL~~GdRiilG~------~H~frfn~P 557 (1221)
T KOG0245|consen 536 TQLRSGDRIILGG------NHVFRFNHP 557 (1221)
T ss_pred ceeccCCEEEEcC------ceeEEecCH
Confidence 8999999999995 345665554
No 92
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.89 E-value=0.14 Score=62.19 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAA 506 (868)
Q Consensus 427 EdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka 506 (868)
..|+..|..++.....|-+..-.+-..+.-++-....+.+++..++.++..++..|+.-..++..+...-..+-..|..|
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555545555555555555445555555555444444444444334444444444444444444
Q ss_pred HH
Q 002902 507 TR 508 (868)
Q Consensus 507 ~r 508 (868)
..
T Consensus 243 ~a 244 (617)
T PF15070_consen 243 VA 244 (617)
T ss_pred HH
Confidence 43
No 93
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=0.11 Score=61.14 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002902 502 DILAATRDLD 511 (868)
Q Consensus 502 ELeka~reLE 511 (868)
++..+....+
T Consensus 525 el~~~~~~~~ 534 (581)
T KOG0995|consen 525 ELDRMVATGE 534 (581)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.82 E-value=0.09 Score=63.42 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 468 VEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDF 512 (868)
Q Consensus 468 l~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~ 512 (868)
+...-.+|.++-.-+.+.+.++..+..-.+.|+++|..+.-.|+.
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777777777777777777777665444443
No 95
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.19 Score=60.42 Aligned_cols=47 Identities=17% Similarity=0.003 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~ 338 (868)
++++.-..++++++......+.++..+...+...+..+...+..+..
T Consensus 126 ~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~ 172 (716)
T KOG4593|consen 126 EQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQW 172 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333333333333
No 96
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.77 E-value=0.048 Score=66.62 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (868)
Q Consensus 297 QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~ 338 (868)
+++++..++.+.+..+..+......++.++..+..++..+..
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333
No 97
>PRK11281 hypothetical protein; Provisional
Probab=97.77 E-value=0.2 Score=64.34 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=21.2
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHH
Q 002902 528 ETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 528 eqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
.+++..++...-.++-..+.+...+.+|+..|+.
T Consensus 420 ~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~ 453 (1113)
T PRK11281 420 NKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666656665566666666777766664
No 98
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.75 E-value=0.23 Score=60.83 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 281 KEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKH 324 (868)
Q Consensus 281 ~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEs 324 (868)
..+.+++..+ -+++.++.+++..+.+.++...+....-.+|..
T Consensus 351 ~~~~ear~~~-~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ 393 (980)
T KOG0980|consen 351 NLKEEARRRI-EQYENQLLALEGELQEQQREAQENREEQEQLRN 393 (980)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444 567777888887777777766654444443333
No 99
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.17 Score=59.05 Aligned_cols=100 Identities=22% Similarity=0.179 Sum_probs=67.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 419 EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG 498 (868)
Q Consensus 419 EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~ 498 (868)
..+++.++.+.+-+=.++-..+..||..--.|.+++.-.+. .|-+-..+.-+|+.|+++++-+..+.+++...+.-
T Consensus 151 R~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~----sQVEyEglkheikRleEe~elln~q~ee~~~Lk~I 226 (772)
T KOG0999|consen 151 RRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ----SQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEI 226 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666655555555666666666666666666544332 35566777788889999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHH
Q 002902 499 LELDILAATRDLDFERRR---LKAARE 522 (868)
Q Consensus 499 Le~ELeka~reLE~Ek~r---Lq~erE 522 (868)
.++.|+.|..-|..|+.. |+.+++
T Consensus 227 AekQlEEALeTlq~EReqk~alkkEL~ 253 (772)
T KOG0999|consen 227 AEKQLEEALETLQQEREQKNALKKELS 253 (772)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888877777666653 555544
No 100
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.70 E-value=0.22 Score=59.21 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 450 LETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 450 LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
+-..++.+.+.++.+.+++.++-..+.++++.|... ..|+++...+.-|..
T Consensus 308 ~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 308 LVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence 333445566677777777777777777777777766 577777777766554
No 101
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.68 E-value=0.12 Score=55.61 Aligned_cols=214 Identities=20% Similarity=0.285 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002902 346 IMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQ 425 (868)
Q Consensus 346 ~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~e 425 (868)
.+..+...+..+...|+.+...++...+.+...++..|.++...+..+.++-.+.........+..+..+. ..
T Consensus 6 KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~-------~~ 78 (247)
T PF06705_consen 6 KLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQ-------ER 78 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 34566777788888888888888888888888888888888887777666555333332223333333332 22
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 002902 426 V-ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS-WKKRVEELENEIKKLREELESEKAAREVAWAKV-SGLELD 502 (868)
Q Consensus 426 l-EdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~-lqkel~elE~eIreLeeELe~e~~e~eel~d~i-~~Le~E 502 (868)
+ ..+....+.+...+..|..+...|+..+.+++..+.. .......+..++..|..-++.++..+.+-...+ ..|...
T Consensus 79 v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~ 158 (247)
T PF06705_consen 79 VENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEE 158 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1233344456667777778888888888877775544 466667778888888888888887665444333 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHHHHhhhHHHHhhhcccc
Q 002902 503 ILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFAR-QQEQLKAMQKTLEDEENYENTS 569 (868)
Q Consensus 503 Leka~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~-~~~qLr~LQ~eLE~E~r~rs~a 569 (868)
...+...++.|+..-......|...+..++ ..-...+..|+. ...+|..|+..|..|.+.|-.+
T Consensus 159 ~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~---~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~ 223 (247)
T PF06705_consen 159 ENRLQEKIEKEKNTRESKLSELRSELEEVK---RRREKGDEQFQNFVLEEIAALKNALALESQEREQS 223 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555554432222222222222221 122233344444 5567777777777777666543
No 102
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.67 E-value=0.15 Score=56.36 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002902 303 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT-EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKA 381 (868)
Q Consensus 303 ~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~-eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~ 381 (868)
..++-.......+...+..|....-.+....+..+.-++ .|-+.+..++.+-..|...++.+.. -....|.+
T Consensus 41 ~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE-------~ltn~L~r 113 (310)
T PF09755_consen 41 RELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEE-------FLTNDLSR 113 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 333333333344444444444444444444444444443 5555555555554444444433221 22355556
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 002902 382 AVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQ-NV 460 (868)
Q Consensus 382 qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk-~~ 460 (868)
.|.+++.+..+.-..++.+.......|...+.+ |..+....+..+..|.+.+-.++.+|+-++ ..
T Consensus 114 kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~--------------Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~l 179 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLEQEQEYLVNKLQKKIER--------------LEKEKSAKQEELERLRREKVDLENTLEQEQEAL 179 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666555544332222221111111122222222 222222222223333334444555554443 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 461 SASWKKRVEELENEIKKLREELES 484 (868)
Q Consensus 461 ~~~lqkel~elE~eIreLeeELe~ 484 (868)
++.|.+++..+.++=+.|+..|+.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 566666666666666666666653
No 103
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.35 Score=60.48 Aligned_cols=121 Identities=12% Similarity=0.187 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQLESQVLEIDKLRNEN------RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEIS 316 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLEe~~~ei~~Lr~ev------k~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~ 316 (868)
+...|..+...+...........+.+..+- +...++|...+.+........+.-+|--++...++....++.++
T Consensus 161 EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~ 240 (1141)
T KOG0018|consen 161 EYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLN 240 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHh
Confidence 344444444444444444433333333332 12233444444444444444444555555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 317 ~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
+.+.++...++.-...+.........+.+++..+...|.+....|-+
T Consensus 241 ~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 241 AEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666666555555556666666666666666665555
No 104
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.61 E-value=0.22 Score=61.03 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLE----IDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~e----i~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k 319 (868)
++++-.+...+..+++....+ +..++.++..+...+..-...+.+.. -=..+|....+.+...+.+++.+...+
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~--~e~eqLr~elaql~a~r~q~eka~~~~ 412 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENR--EEQEQLRNELAQLLASRTQLEKAQVLV 412 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555656666665544333 34444444333332222111111111 001123333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLS 398 (868)
Q Consensus 320 ~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~e 398 (868)
..++...--...+++.......++......+-....+..++++-.+.... +.++....|..+|.++..+...|..+.+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-~~~~~~~~L~d~le~~~~~~~~~~~K~e 490 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-DVEEENTNLNDQLEELQRAAGRAETKTE 490 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55555555555666666666666666666666666667777766554444 4445566666777777776666666665
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.60 E-value=0.12 Score=53.38 Aligned_cols=148 Identities=11% Similarity=0.157 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 309 QKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQL 388 (868)
Q Consensus 309 ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~ 388 (868)
-..+.++.....+|..+...|.+.+...+...+.|...+..|..++..++..+... +.+.+++++.+. .+..++.
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a-K~l~eEledLk~----~~~~lEE 81 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA-KALEEELEDLKT----LAKSLEE 81 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHH
Confidence 34455667777788888888888888888888888888888888888877544433 334444433322 2222222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 389 ETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSA 462 (868)
Q Consensus 389 el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~ 462 (868)
+......... ........+...+..|++.-.++..+.+.++.+...+......|...+..|+..+..-.+...
T Consensus 82 ~~~~L~aq~r-qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~ 154 (193)
T PF14662_consen 82 ENRSLLAQAR-QLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILS 154 (193)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 111222234444555666666777777777777777766666666666666666555444443
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.12 Score=62.57 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
+-.++.++...+.+...+-.+..++-.-++........+..+....+.++..|.+++....+...++-+++.+|+.....
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads 887 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS 887 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc
Confidence 44455555555555555555555555555555555555566666667777777777777777677777777777654422
Q ss_pred --HHHHHHHHHH
Q 002902 506 --ATRDLDFERR 515 (868)
Q Consensus 506 --a~reLE~Ek~ 515 (868)
..+.++..+.
T Consensus 888 e~l~ka~~~~k~ 899 (970)
T KOG0946|consen 888 ETLSKALKTVKS 899 (970)
T ss_pred hHHHHHHHHhhc
Confidence 4555555544
No 107
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.59 E-value=0.34 Score=58.35 Aligned_cols=113 Identities=15% Similarity=0.233 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERI 524 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErL 524 (868)
...+.|+.++......+..+...+..-..-+..+...+......+.++.+....+. .....|.....+.+..+.++
T Consensus 344 ~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~----~~l~~L~~dE~~Ar~~l~~~ 419 (560)
T PF06160_consen 344 EIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEIN----ESLQSLRKDEKEAREKLQKL 419 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777666666666666666666666666555554444443333 33333333444444445666
Q ss_pred HHHHHHHHHhhchH------HHHHHHHHHHHHHHHHHhhhHHH
Q 002902 525 MLRETQLRAFYSTT------EEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 525 q~reqQlkae~ek~------EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
...+...++.+++. +..-..|......+..|...|+.
T Consensus 420 ~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~ 462 (560)
T PF06160_consen 420 KQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQ 462 (560)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666665555211 23333444444455555555543
No 108
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.57 E-value=0.35 Score=57.97 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS 349 (868)
Q Consensus 304 kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~k 349 (868)
.+++.-+........+..++.-+..|..-|.........+..+++-
T Consensus 336 ~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~ 381 (786)
T PF05483_consen 336 QMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKI 381 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333344444444444444444444444444443333
No 109
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.6 Score=59.38 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 002902 48 SPKKTVV 54 (868)
Q Consensus 48 ~~~~~~~ 54 (868)
+.++|+.
T Consensus 36 sGKSSIl 42 (908)
T COG0419 36 AGKSSIL 42 (908)
T ss_pred CcHHHHH
Confidence 4445555
No 110
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.22 Score=54.21 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLe 479 (868)
.+..+++.+......++..+..|+.+..+-...+..+......+..+...|.
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 166 ALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455555666666777777777777777777777777776666666666555
No 111
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.44 E-value=0.63 Score=57.90 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 337 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e 337 (868)
+..++..++...+-.+.+++++......|+.+-..|..+++-+.
T Consensus 306 lkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 306 LKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 44444445444555555555555555555555555555544433
No 112
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.51 Score=55.26 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 402 SRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE 481 (868)
Q Consensus 402 ~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeE 481 (868)
..++-+++..+++++......+.+.+.|.....++.....+.|..+..|..-|.+-+-+-+.+-.+-.+|+.+--.|+..
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34444454444444433333444444555555555555555666666666666666555555555555666555555555
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHH
Q 002902 482 LESEKA---AREVAWAKVSGLELDIL 504 (868)
Q Consensus 482 Le~e~~---e~eel~d~i~~Le~ELe 504 (868)
+..++. +|+-+.-.+++|+.+++
T Consensus 186 Vs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 186 VSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 544443 55555555555555443
No 113
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.37 E-value=0.34 Score=53.18 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=59.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 416 QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK 495 (868)
Q Consensus 416 eE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~ 495 (868)
.+..++..+-+|.++++|..++.++.. ++.+..-++.++.+.-.+-..++.++.+|+.+---+++.++++-.+
T Consensus 171 rdaLrEKtL~lE~~QrdL~Qtq~q~KE-------~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 171 RDALREKTLALESVQRDLSQTQCQIKE-------IEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677788877777665544 4455555666666666666666777777776666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 496 VSGLELDILAATRDLDFERRRLKAA 520 (868)
Q Consensus 496 i~~Le~ELeka~reLE~Ek~rLq~e 520 (868)
...-++-+--+..+...-...|+..
T Consensus 244 ~~~kek~ViniQ~~f~d~~~~L~ae 268 (305)
T PF14915_consen 244 ADNKEKTVINIQDQFQDIVKKLQAE 268 (305)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6555554444444444444444443
No 114
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.35 E-value=0.092 Score=56.35 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 337 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e 337 (868)
+..++..+.+.+..+.++..++..++.++.+++.+++..+
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334443333333333333
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.34 E-value=0.75 Score=56.52 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESE 485 (868)
Q Consensus 435 ~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e 485 (868)
+++.++..+++.+..|-..|.+-+......+.++.....+|..|-..|..+
T Consensus 269 KL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 269 KLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444444444444444444444333
No 116
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.32 E-value=0.47 Score=62.80 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=11.8
Q ss_pred cccCCCCcCCCCCcccccccc
Q 002902 679 NIDLNKPETLAGETMQLEDEA 699 (868)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~ 699 (868)
|..|.+...--|-+|+|+-..
T Consensus 1137 N~~l~~~~~s~g~~~~l~w~~ 1157 (1353)
T TIGR02680 1137 NTELAKRPTSTGVRLRLQWKL 1157 (1353)
T ss_pred HHHHhcCCCccCceEEEEEee
Confidence 444555555556667766554
No 117
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.30 E-value=0.56 Score=54.11 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~E 356 (868)
+.....-++.-...++....+--..+.+|..++...+.++..+.++++.|.+++.+..-.+++
T Consensus 307 l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~ 369 (622)
T COG5185 307 LKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369 (622)
T ss_pred HhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH
Confidence 333333333333334444444445566666666666777777777777766666655443333
No 118
>PRK09039 hypothetical protein; Validated
Probab=97.25 E-value=0.074 Score=60.16 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 002902 475 IKKLREELE 483 (868)
Q Consensus 475 IreLeeELe 483 (868)
+..++.+++
T Consensus 192 l~~~~~~~~ 200 (343)
T PRK09039 192 LNRYRSEFF 200 (343)
T ss_pred HHHhHHHHH
Confidence 344444443
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.20 E-value=0.13 Score=55.36 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 002902 540 EISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 540 Ei~e~~k~~~~qLr~LQ~eLE~ 561 (868)
++.+....++.+...|-..|+.
T Consensus 153 ~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 153 EIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhcCH
Confidence 3444444455555555555554
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.16 E-value=0.42 Score=50.01 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 427 ESLKLKLDETRERLVTSDNKVRLLETQVCK 456 (868)
Q Consensus 427 EdL~~eLE~~ra~~~~LEkkqr~LE~qLeE 456 (868)
+.|..+|+.+...+...++++..|+.+++-
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555444
No 121
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=97.11 E-value=0.79 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLE 264 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~e 264 (868)
.+|..|.++|..|..+++.+-.+
T Consensus 50 ~rv~slsq~Nkvlk~elet~k~k 72 (552)
T KOG2129|consen 50 ARVSSLSQRNKVLKGELETLKGK 72 (552)
T ss_pred HHHHHHHhhhhhhhhhHHhhhhH
Confidence 45777777777777776666444
No 122
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.10 E-value=0.72 Score=51.59 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 307 AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (868)
Q Consensus 307 E~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~ 359 (868)
..++....+...+..+..++.-.......++.-+.+|++..+.+......+.+
T Consensus 47 ~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 47 KLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555544333333
No 123
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.08 E-value=0.81 Score=51.72 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 251 NTELRKQLESQVLEIDKLRNENRVVVERHEK---EMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEME 327 (868)
Q Consensus 251 n~eLr~qLEe~~~ei~~Lr~evk~i~er~E~---El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~ 327 (868)
+..++.+|..+..++.....+...+....++ |+...+.+. +..+.++.+++..+.+....+..+.++...|+.++.
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~-~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQER-EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445444444444444333333322222 233333332 344444444444444444444444444444444333
Q ss_pred HHHH
Q 002902 328 DLND 331 (868)
Q Consensus 328 EL~~ 331 (868)
.|..
T Consensus 155 ~l~~ 158 (499)
T COG4372 155 TLAE 158 (499)
T ss_pred HHHH
Confidence 3333
No 124
>PRK09039 hypothetical protein; Validated
Probab=97.03 E-value=0.13 Score=58.28 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002902 409 QEVINKLQIAEKQSSLQVESLKLKLDETRER-LVTSDNKVRLLETQVC 455 (868)
Q Consensus 409 ee~l~KLeE~EKK~r~elEdL~~eLE~~ra~-~~~LEkkqr~LE~qLe 455 (868)
+..+...+.+.+....++++|..+|+.+.+. +.+|.+-+.+|-..|.
T Consensus 157 e~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 157 EAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333334444455555566666666665444 6666666666655544
No 125
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.96 E-value=0.68 Score=48.91 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 457 EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (868)
Q Consensus 457 Ek~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~EL 503 (868)
-++....+++.++..+-++..|+..|+.-..+.++|..++..|-..|
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556777787888888888888888888888888887765544
No 126
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.95 E-value=0.82 Score=49.74 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
+.....|...+..+..++..+...+...+..
T Consensus 16 ~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~ 46 (264)
T PF06008_consen 16 WPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQ 46 (264)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 3556666666666666666665554444333
No 127
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.88 E-value=2.7 Score=54.45 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 473 NEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 473 ~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
.+..-|.++.+.+..+...+.-.+..++..+.+
T Consensus 1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~ 1073 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKK 1073 (1294)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 128
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.85 E-value=0.00062 Score=83.78 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=6.8
Q ss_pred HHHHHHHHhhhHHH
Q 002902 548 QQEQLKAMQKTLED 561 (868)
Q Consensus 548 ~~~qLr~LQ~eLE~ 561 (868)
+..++..|+.+++.
T Consensus 508 L~~~~~~Le~e~~~ 521 (722)
T PF05557_consen 508 LQKEIEELERENER 521 (722)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555444
No 129
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=1.1 Score=54.75 Aligned_cols=65 Identities=14% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 262 VLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS 334 (868)
Q Consensus 262 ~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe 334 (868)
.++.+.....++.++.+....++.+.. ...+++-..++++..+........+|..++..|..+|.
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ--------~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQ--------MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444445554444444443333 34444444445555555556666666666666666655
No 130
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.81 E-value=0.27 Score=49.00 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 434 DETRERLVTSDNKVRLLETQVCKEQNVS 461 (868)
Q Consensus 434 E~~ra~~~~LEkkqr~LE~qLeEEk~~~ 461 (868)
..+...+..++++++.|+.....|..++
T Consensus 104 ~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 104 READVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 3333334444444444444444443333
No 131
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=2.2 Score=52.21 Aligned_cols=8 Identities=25% Similarity=-0.031 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 002902 404 RELEQQEV 411 (868)
Q Consensus 404 ~~EElee~ 411 (868)
+.+++++.
T Consensus 462 A~ed~Qeq 469 (698)
T KOG0978|consen 462 AFEDMQEQ 469 (698)
T ss_pred HHHHHHHH
Confidence 33334433
No 132
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.78 E-value=0.77 Score=56.98 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
++.|+.+|..++.....++..++.+.........+...++.++..+..++..|+.+|+.++...+++..+...|+.+|+.
T Consensus 633 L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 633 LEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666677778888888888888888888888888888777777766
Q ss_pred HHH
Q 002902 506 ATR 508 (868)
Q Consensus 506 a~r 508 (868)
+..
T Consensus 713 ~~~ 715 (769)
T PF05911_consen 713 MKK 715 (769)
T ss_pred hhc
Confidence 543
No 133
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.77 E-value=0.85 Score=55.45 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=18.0
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHhhh
Q 002902 532 RAFYSTTEEISVLFARQQEQLKAMQKT 558 (868)
Q Consensus 532 kae~ek~EEi~e~~k~~~~qLr~LQ~e 558 (868)
...+.++++....|+.++..++.--.-
T Consensus 360 d~~i~k~keea~srk~il~~ve~W~sa 386 (660)
T KOG4302|consen 360 DNLIKKYKEEALSRKEILERVEKWESA 386 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335577777788888888877544333
No 134
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.76 E-value=0.00035 Score=85.80 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=4.8
Q ss_pred CceEeccCCC
Q 002902 103 DEHCIGRLVD 112 (868)
Q Consensus 103 ~~~~IGR~~~ 112 (868)
+...||++++
T Consensus 98 d~~~Iae~~d 107 (713)
T PF05622_consen 98 DLQAIAENSD 107 (713)
T ss_dssp -HHHHHTT--
T ss_pred CHHHHHhCCC
Confidence 4557777654
No 135
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.74 E-value=1.5 Score=49.65 Aligned_cols=11 Identities=18% Similarity=0.444 Sum_probs=6.3
Q ss_pred ccCCCCCcccc
Q 002902 720 QLNNPLSQKTM 730 (868)
Q Consensus 720 ~~~~~~~~~~~ 730 (868)
+-.+|++.+.|
T Consensus 462 qad~P~e~~ai 472 (499)
T COG4372 462 QADTPSERSAI 472 (499)
T ss_pred hcCCcccccCC
Confidence 45566665554
No 136
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.72 E-value=0.0068 Score=74.77 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG 498 (868)
Q Consensus 425 elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~ 498 (868)
++..|...+...+.....++.....+..+..........+..++..+..++..|+.++..+......+...+..
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333322122223344445555555555555554444444444443
No 137
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.71 E-value=0.00039 Score=85.37 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQ 322 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kL 322 (868)
+++.|+.++.++...+..+...+..+..++..++.+.+.....+. . .+.|..+++.++.+.+.+.+.-..+..=+.||
T Consensus 247 ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~-~-a~~LrDElD~lR~~a~r~~klE~~ve~YKkKL 324 (713)
T PF05622_consen 247 QLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAR-E-ARALRDELDELREKADRADKLENEVEKYKKKL 324 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555545555555444444222222222 2 25678888888887777777666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 323 KHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (868)
Q Consensus 323 EsEl~EL~~qLe~~e~~~~eL~k~l~kLe~ 352 (868)
+. +.+|..++..++..+..+...+..++.
T Consensus 325 ed-~~~lk~qvk~Lee~N~~l~e~~~~LEe 353 (713)
T PF05622_consen 325 ED-LEDLKRQVKELEEDNAVLLETKAMLEE 353 (713)
T ss_dssp ------------------------------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 667777777777766655554444443
No 138
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=2.6 Score=51.55 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVER 278 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er 278 (868)
.+++.|-..+.+...++.....++.....++-.++..
T Consensus 265 ~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~ 301 (698)
T KOG0978|consen 265 REMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQ 301 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 4466666666666666655544444445554444444
No 139
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.66 E-value=0.82 Score=49.01 Aligned_cols=129 Identities=13% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAV 383 (868)
Q Consensus 304 kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL 383 (868)
.....+.++.+...--.+++. +|..+|..++.++.+|....++|..++.-++..+++.+.+-.... ..|++.+
T Consensus 28 ~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~----s~Leddl 100 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQE----SQLEDDL 100 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 333444455555555566665 456677777777777777777777666666655555543322222 1112222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002902 384 QKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKV 447 (868)
Q Consensus 384 ~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkq 447 (868)
+.... +.+.+-..+++|+.+-..|+..++-.-.-++|+-.+|..+-+.++.||...
T Consensus 101 sqt~a--------ikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 101 SQTHA--------IKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHH--------HHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 21111 222333444455544444444444444445666666665555555555433
No 140
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.60 E-value=4.1 Score=52.87 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHH
Q 002902 517 LKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 517 Lq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
++.++..+......++..+...+++-.....+..++..++...+.
T Consensus 834 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1047)
T PRK10246 834 LAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVED 878 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555555555555555544443
No 141
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.51 E-value=2.2 Score=48.70 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhHH-HHhhhccccccc
Q 002902 546 ARQQEQLKAMQKTLE-DEENYENTSVDI 572 (868)
Q Consensus 546 k~~~~qLr~LQ~eLE-~E~r~rs~a~~~ 572 (868)
..+-+.|++-...|| +++||+++.+..
T Consensus 309 ealcr~lsEsesslemdeery~Ne~~~~ 336 (552)
T KOG2129|consen 309 EALCRMLSESESSLEMDEERYLNEFVDF 336 (552)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhcc
Confidence 334444544444444 357899887753
No 142
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.50 E-value=1.3 Score=46.00 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 442 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 490 (868)
Q Consensus 442 ~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~e 490 (868)
..+..++.+-.+|.+--.....+.+.+..|+..+..|+..+...+..|.
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~ 189 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYE 189 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHH
Confidence 3334444444444443333444444555555555555555554444444
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.41 E-value=0.22 Score=61.93 Aligned_cols=147 Identities=13% Similarity=0.166 Sum_probs=80.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNV--SA-------SWKKRVEELENEIKKLREELESEKAAREVAWA 494 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~--~~-------~lqkel~elE~eIreLeeELe~e~~e~eel~d 494 (868)
.++.++..+|..++.....++.+...+..++..-... .. .....+..+..++.+++.++..+...|-.---
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP 316 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHP 316 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 3455666666666666666666666666555431100 00 01134555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhhccccc
Q 002902 495 KVSGLELDILAATRDLDFERRRL----KAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSV 570 (868)
Q Consensus 495 ~i~~Le~ELeka~reLE~Ek~rL----q~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a~ 570 (868)
.+..+..+|+.++.++..+..++ ..+.+.++.+++.++++++..+.--...-....++..||++.+..+..-..++
T Consensus 317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666555555555543 33444555556666666655555555555566677777777777665555444
No 144
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.33 E-value=5.8 Score=51.54 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccc
Q 002902 537 TTEEISVLFARQQEQLKAMQKTLEDEENYENTS 569 (868)
Q Consensus 537 k~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a 569 (868)
.|..++++++..+-++....-.-.+.-+|..++
T Consensus 1082 ~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aL 1114 (1294)
T KOG0962|consen 1082 DFKDAEKNYRKALIELKTTELSNKDLDKYYKAL 1114 (1294)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555565543
No 145
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.33 E-value=1.1 Score=50.94 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQLE 259 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLE 259 (868)
++..++.++..++.++.
T Consensus 82 ~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 82 DAAELESQVLRLEAEVA 98 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 146
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.32 E-value=6.8 Score=52.23 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE 342 (868)
Q Consensus 296 ~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~e 342 (868)
.++.++...+...+..+..+...+.+++..+..+..++..+...+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~ 322 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEA 322 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
No 147
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.30 E-value=2.6 Score=47.36 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 477 KLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 477 eLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
+++.++.......+++...+..+..+|..+.+.++
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444333333
No 148
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.30 E-value=1.8 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQLESQVLE 264 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLEe~~~e 264 (868)
+|..|..++..+...++.+..+
T Consensus 13 ki~~L~n~l~elq~~l~~l~~E 34 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKE 34 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 149
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=3.3 Score=47.93 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLe 479 (868)
.++++|...+..-+.-+.+...+.++|++++..+.
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444434444344444444444443333
No 150
>PRK11281 hypothetical protein; Provisional
Probab=96.23 E-value=6.5 Score=51.14 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=3.8
Q ss_pred Ccccccccc
Q 002902 711 TCQETVNHS 719 (868)
Q Consensus 711 ~~~~~~~~~ 719 (868)
.++.|+.+.
T Consensus 599 ~~~~Gl~~~ 607 (1113)
T PRK11281 599 LRPNGVAER 607 (1113)
T ss_pred hCCCCeeHH
Confidence 344444433
No 151
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.20 E-value=2.8 Score=46.70 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMED 328 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~E 328 (868)
+.|..+-..|..+.+.++..+......+.+|..++.-
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~ 122 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM 122 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666666666665543
No 152
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.20 E-value=3.9 Score=48.35 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 474 EIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 474 eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
.+.+++..|.........+.+.+..|.+
T Consensus 383 ~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 383 NLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333333333344444444444443
No 153
>PF13514 AAA_27: AAA domain
Probab=96.15 E-value=7.2 Score=50.94 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=8.8
Q ss_pred ccCcccccccCCCcc
Q 002902 624 GQNTQEAEFTSGDRT 638 (868)
Q Consensus 624 ~~~~~~~~~~~~~~~ 638 (868)
+..+|-.=||.-.|.
T Consensus 1080 s~~~QVI~FTch~~l 1094 (1111)
T PF13514_consen 1080 SRRRQVIYFTCHEHL 1094 (1111)
T ss_pred ccCCeEEEEeccHHH
Confidence 345666666665555
No 154
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.13 E-value=0.45 Score=56.14 Aligned_cols=19 Identities=11% Similarity=0.136 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 002902 381 AAVQKSQLETQEKLKRLSD 399 (868)
Q Consensus 381 ~qL~kl~~el~eerkk~ee 399 (868)
.++..++.++.....+|.+
T Consensus 254 ~~l~~l~~~l~~l~~~y~~ 272 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTD 272 (498)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4455555555555555553
No 155
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.13 E-value=3.6 Score=51.74 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=6.2
Q ss_pred ccccccccccc
Q 002902 610 TTEKHDCDIRS 620 (868)
Q Consensus 610 ~~~~~~~~~~~ 620 (868)
|-..||-+.|+
T Consensus 493 ~~~i~d~k~~v 503 (1072)
T KOG0979|consen 493 VKKIKDEKWRV 503 (1072)
T ss_pred HHHhhhcceee
Confidence 44556655555
No 156
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.13 E-value=0.86 Score=56.72 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAEIS 316 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~el~ 316 (868)
=+..|+.+++.++++.+..+....
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666655543
No 157
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=5.3 Score=48.58 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 489 (868)
Q Consensus 427 EdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~ 489 (868)
..++.+++.+..-+....+-.-.++..+++.-..+....+.+..++.++..|..+|....+..
T Consensus 429 ~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l 491 (716)
T KOG4593|consen 429 PQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSL 491 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444555555555555555544433
No 158
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=96.01 E-value=2.9 Score=45.11 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 320 AEQKHEMEDLNDRLSASMQ-SCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLET 390 (868)
Q Consensus 320 ~kLEsEl~EL~~qLe~~e~-~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el 390 (868)
..++..++.+...+...-. ....+...+..|...|..|...+.+++..+....+.....+...|..+...+
T Consensus 66 ~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~ 137 (247)
T PF06705_consen 66 SKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAF 137 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544433 3345566666677777777777777776665555454444445555444433
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.01 E-value=3.3 Score=50.03 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=4.6
Q ss_pred HHHhhhh
Q 002902 805 ALCEMIG 811 (868)
Q Consensus 805 ~~~~~~~ 811 (868)
-|..|||
T Consensus 539 EiArml~ 545 (563)
T TIGR00634 539 ELARMLA 545 (563)
T ss_pred HHHHHhC
Confidence 3677875
No 160
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.98 E-value=0.44 Score=56.16 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhhccccc
Q 002902 513 ERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENTSV 570 (868)
Q Consensus 513 Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a~ 570 (868)
....++.++..++.++..++.+++..++.-...-....++..|+++++..+.....++
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555556666555555555555555666777788887777655444444
No 161
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.97 E-value=3.8 Score=46.12 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 297 QLKVLRDMLDAKQKELAEISRISAEQKHE 325 (868)
Q Consensus 297 QLeELq~kLeE~ek~l~el~~~k~kLEsE 325 (868)
.|+-.+.-..++.+.+.+.......++.+
T Consensus 69 ~Lely~~~c~EL~~~I~egr~~~~~~E~~ 97 (325)
T PF08317_consen 69 MLELYQFSCRELKKYISEGRQIFEEIEEE 97 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666555555555555443
No 162
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.95 E-value=1.1 Score=54.05 Aligned_cols=33 Identities=30% Similarity=0.239 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 475 IKKLREELESEKAAREVAWAKVSGLELDILAAT 507 (868)
Q Consensus 475 IreLeeELe~e~~e~eel~d~i~~Le~ELeka~ 507 (868)
+..|..+++..++.++++......|...++.++
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr 250 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLR 250 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444444444444444444444444433
No 163
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.92 E-value=0.59 Score=46.45 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 439 RLVTSDNKVRLLETQVCK 456 (868)
Q Consensus 439 ~~~~LEkkqr~LE~qLeE 456 (868)
....++.++..|++.|+.
T Consensus 18 e~dsle~~v~~LEreLe~ 35 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEM 35 (140)
T ss_pred hHhhHHHHHHHHHHHHHH
Confidence 333333333333333333
No 164
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.87 E-value=3.6 Score=49.98 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHH
Q 002902 307 AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR--RVDRENAEADLKAAVQ 384 (868)
Q Consensus 307 E~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~--~EElEe~~~eLq~qL~ 384 (868)
+++..++...+.+-.++..+..|..+|+-++..+...-+ ...+..--.+|+..+++..... ....+++...+..+++
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~q 173 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLE 173 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555544444 3333333334444444433222 1124444455555666
Q ss_pred HHHHHHHHHHHHhh
Q 002902 385 KSQLETQEKLKRLS 398 (868)
Q Consensus 385 kl~~el~eerkk~e 398 (868)
+++.++...+.+.+
T Consensus 174 e~naeL~rarqree 187 (916)
T KOG0249|consen 174 ELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555554444
No 165
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.78 E-value=3 Score=43.45 Aligned_cols=33 Identities=9% Similarity=0.267 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIK 476 (868)
Q Consensus 444 Ekkqr~LE~qLeEEk~~~~~lqkel~elE~eIr 476 (868)
...+..+...+++.+.....++.++..++..+.
T Consensus 157 t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 157 TQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666555555555554443
No 166
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.75 E-value=6.4 Score=47.05 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002902 248 QRSNTELRKQLESQVLEIDKLRNENRVV 275 (868)
Q Consensus 248 E~En~eLr~qLEe~~~ei~~Lr~evk~i 275 (868)
..++..+...+.+...+++.++.++..+
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554443
No 167
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=6.6 Score=46.48 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 279 HEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS 349 (868)
Q Consensus 279 ~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~k 349 (868)
|++++.++.+.+ ..+...+.+....+-++......+.+...++.+++.++...|+.-...|.+++.++.+
T Consensus 336 ~~ke~kdLkEkv-~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 336 FRKENKDLKEKV-NALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444 3333444444444444444444444444555555555555555555555555544443
No 168
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.63 E-value=11 Score=48.98 Aligned_cols=9 Identities=0% Similarity=-0.138 Sum_probs=4.3
Q ss_pred ccccccccc
Q 002902 712 CQETVNHSQ 720 (868)
Q Consensus 712 ~~~~~~~~~ 720 (868)
++.|+.+..
T Consensus 579 ~~~Gl~~~H 587 (1109)
T PRK10929 579 RPNGLFIAH 587 (1109)
T ss_pred CCCCeeHHh
Confidence 455554443
No 169
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.61 E-value=10 Score=48.40 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 258 LESQVLEIDKLRNENRVVVER---HEKEMKEMKE-SVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (868)
Q Consensus 258 LEe~~~ei~~Lr~evk~i~er---~E~El~El~E-~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qL 333 (868)
+..+..++.+|++++.+.|++ |.++-.--.+ .-++....+|+++..+++.+++++.++.+...-+......|..++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455566777788887776665 2221111001 011344555666666666666666666666665555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 334 SASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 334 e~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
..++..+..-...+..++..+.+++..|..
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665544
No 170
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.58 E-value=5.1 Score=44.71 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~q 353 (868)
++.+-.-|++.++.+.-+...=..|-.+...|..+.+.++..+....+.+..|+.+
T Consensus 64 idavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHe 119 (306)
T PF04849_consen 64 IDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHE 119 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666665555556666666666666666666665555555554433
No 171
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=95.55 E-value=0.024 Score=65.82 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=66.6
Q ss_pred EEecCCceEeccCCCCCceeeC------CCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeCCeeccCCC
Q 002902 98 ILLTADEHCIGRLVDDAHFQID------SNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNS 171 (868)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~------~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVNg~ki~k~~ 171 (868)
+.+.+.+.+|||....+.|-|| ...|||..+.|..... | .|||+.+.....||||.+|.+ |
T Consensus 443 h~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~-G-----------sF~IkNlGK~~I~vng~~l~~-g 509 (547)
T KOG2293|consen 443 HYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND-G-----------SFFIKNLGKRSILVNGGELDR-G 509 (547)
T ss_pred hhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccC-C-----------cEEeccCcceeEEeCCccccC-C
Confidence 4566788999999875444443 2479999999987653 2 499999999999999999999 8
Q ss_pred CccccCCCCEEEeccCCCCCceEEEEEee
Q 002902 172 SEVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (868)
Q Consensus 172 ~~~~L~~GD~I~~~~~~~~~~~f~fvf~d 200 (868)
..+.|.+..+|.|. .+.|||.-
T Consensus 510 q~~~L~~nclveIr-------g~~FiF~~ 531 (547)
T KOG2293|consen 510 QKVILKNNCLVEIR-------GLRFIFEI 531 (547)
T ss_pred ceEEeccCcEEEEc-------cceEEEee
Confidence 88999999999998 45677754
No 172
>PRK10869 recombination and repair protein; Provisional
Probab=95.53 E-value=8.1 Score=46.69 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002902 403 RRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 443 (868)
Q Consensus 403 ~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~L 443 (868)
.+.+++++.+..+....||....++++-.-++.++..+..+
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 34556666666666667777766666666555555444444
No 173
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.52 E-value=10 Score=47.91 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 002902 540 EISVLFARQQEQL 552 (868)
Q Consensus 540 Ei~e~~k~~~~qL 552 (868)
.|+.+|...|..+
T Consensus 910 ~In~~Fs~~F~~m 922 (1072)
T KOG0979|consen 910 QINERFSQLFSSM 922 (1072)
T ss_pred HHHHHHHHHHhhc
Confidence 5777777766654
No 174
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=8.8 Score=46.92 Aligned_cols=110 Identities=11% Similarity=0.109 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV----SISYLHQLKVLRDMLDAKQ---KELAE 314 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i----~KklE~QLeELq~kLeE~e---k~l~e 314 (868)
++|..|.....-+.....-+...+...+.++..+.++|.+.-+=..-.. --.+..||.+++.+++++. ..++-
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~ 695 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIAI 695 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHHH
Confidence 7799998888888888888899999999998777777543211111111 1134555666666555553 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe 351 (868)
+...+..-+.....|+.++...-..+..+.+.+++.+
T Consensus 696 ~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~ 732 (1104)
T COG4913 696 AKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAA 732 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555444443
No 175
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.40 E-value=8.9 Score=46.35 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002902 404 RELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLV 441 (868)
Q Consensus 404 ~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~ 441 (868)
...++++.+..+....+|....++++...++..+..+.
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELD 339 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555554444443333
No 176
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.35 E-value=5.5 Score=45.40 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKE 311 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~ 311 (868)
+..++..++.++..++..
T Consensus 79 ~~~~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 79 VEADAAELESQVLRLEAE 96 (423)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 177
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=95.31 E-value=0.058 Score=62.39 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=57.1
Q ss_pred CcceEEEecCCceEec-cCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeCC--eeccC
Q 002902 93 HQGINILLTADEHCIG-RLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNC--ERFKK 169 (868)
Q Consensus 93 ~~g~~i~L~~~~~~IG-R~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVNg--~ki~k 169 (868)
..|..+.|..+.|+|| +...| ||++.++.||+.||.|..... .++|.+ +..+.++|| .....
T Consensus 10 ~~G~~~~L~~g~~~iG~~~~~~-di~L~d~~~~~~h~~l~v~~~-------------~~~l~~-~~~~~~~~g~~~~~~~ 74 (410)
T TIGR02500 10 HRGAELPLPEGNLVLGTDAADC-DIVLSDGGIAAVHVSLHVRLE-------------GVTLAG-AVEPAWEEGGVLPDEE 74 (410)
T ss_pred CCCcEEECCCCceEeccCCCCc-EEEeCCCCccchheEEEEcCc-------------eEEEec-CCcceeECCcccccCC
Confidence 4678899999999999 99888 999999999999999988642 355554 356788888 44443
Q ss_pred CCCccccCCCCEEEec
Q 002902 170 NSSEVNIDHGDIISFA 185 (868)
Q Consensus 170 ~~~~~~L~~GD~I~~~ 185 (868)
+ ..|..+-.|.++
T Consensus 75 -g--~~l~~~~~l~~g 87 (410)
T TIGR02500 75 -G--TPLPSGTPLLVA 87 (410)
T ss_pred -C--CccCCCCceecc
Confidence 2 346666666666
No 178
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.19 E-value=12 Score=46.76 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 254 LRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (868)
Q Consensus 254 Lr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qL 333 (868)
++.++..+-..++..=++++.+++..++-+.++.-+..+.++.--.+|+.+|.+..++ +.++..+...|...|
T Consensus 43 ~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~-------l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 43 LEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKR-------LAESAAENSALSKAL 115 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHH
Confidence 3333333344455555666777888888888887777666665555655555555544 444555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHhhHHHHHHHHHH
Q 002902 334 SASMQSCTEANEIMKSQKVTIDELKTQLDEERNL---RRVDRENAEADLK-AAV-QKSQLETQEKLKRLSDAASRRELEQ 408 (868)
Q Consensus 334 e~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~---~~EElEe~~~eLq-~qL-~kl~~el~eerkk~eee~~~~~EEl 408 (868)
.+-...+.+|.+.+...+..+..|...|+.-.+. ++=++--...+|+ +.. ..+..+.++.-.++.-+....+..|
T Consensus 116 ~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakL 195 (769)
T PF05911_consen 116 QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKL 195 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777777777663321 1111101111111 001 1123334444444554555666666
Q ss_pred HHHHHHHHHHH
Q 002902 409 QEVINKLQIAE 419 (868)
Q Consensus 409 ee~l~KLeE~E 419 (868)
+..=.+|+-..
T Consensus 196 EaEC~rLr~l~ 206 (769)
T PF05911_consen 196 EAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHH
Confidence 66655665444
No 179
>PF13514 AAA_27: AAA domain
Probab=95.17 E-value=16 Score=47.89 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 470 ELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 470 elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
.+..++..++.++..+...+.++.+.+..+..+|+.
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 180
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.10 E-value=3.7 Score=40.22 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 320 ~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
..++.++..+..........+..+...+..+.....+.+..+
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444444444444333333333333333333333
No 181
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=95.09 E-value=0.074 Score=65.11 Aligned_cols=91 Identities=23% Similarity=0.307 Sum_probs=67.4
Q ss_pred eEEEEEecccccccCcceEEEecCCceEeccCCCC-CceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCc
Q 002902 79 WGVLTAISNNARKRHQGINILLTADEHCIGRLVDD-AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTST 157 (868)
Q Consensus 79 WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~-~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~St 157 (868)
.-+|+-++.+.. .....|.|..+.+-+|-.... ..|.|..|.|=..||-|..-. ..|.+.=.++
T Consensus 356 lPvLve~s~dG~--~s~~ri~L~~~vtEVGs~~~~~~~iqLfGP~IqprHc~it~me-------------GVvTvTP~~~ 420 (1629)
T KOG1892|consen 356 LPVLVELSPDGS--DSRKRIRLQLSVTEVGSEKLDDNSIQLFGPGIQPRHCDITNME-------------GVVTVTPRSM 420 (1629)
T ss_pred CcEEEEEcCCCC--CcceeEEeccCceeccccccCCcceeeeCCCCCccccchhhcc-------------ceEEeccccc
Confidence 345655543322 111358888899999987742 258899999999999997643 1467777777
Q ss_pred -CCeeeCCeeccCCCCccccCCCCEEEeccC
Q 002902 158 -NGTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (868)
Q Consensus 158 -NGTfVNg~ki~k~~~~~~L~~GD~I~~~~~ 187 (868)
--|||||.+|.. +.+|.+|+.|.||.+
T Consensus 421 DA~t~VnGh~isq---ttiL~~G~~v~fGa~ 448 (1629)
T KOG1892|consen 421 DAETYVNGHRISQ---TTILQSGMKVQFGAS 448 (1629)
T ss_pred chhhhccceecch---hhhhccCCEEEeccc
Confidence 679999999976 679999999999954
No 182
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.08 E-value=10 Score=45.11 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=3.3
Q ss_pred HhhhHHHHh
Q 002902 555 MQKTLEDEE 563 (868)
Q Consensus 555 LQ~eLE~E~ 563 (868)
++.+|..+.
T Consensus 518 v~~~l~eAe 526 (570)
T COG4477 518 VAKSLNEAE 526 (570)
T ss_pred HHHHHHHHH
Confidence 333333333
No 183
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.04 E-value=7.7 Score=43.56 Aligned_cols=114 Identities=22% Similarity=0.241 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH--HHHHHHHHHHHHHHHH-----HHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVE---------EL--ENEIKKLREELESEKA-----AREV 491 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~---------el--E~eIreLeeELe~e~~-----e~ee 491 (868)
.|+..++=..+.....|..+++|+.+|++++.++.++-..+- .. -.+..++.-.++..+. +-+-
T Consensus 150 qL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~ 229 (561)
T KOG1103|consen 150 QLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEA 229 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHH
Confidence 334444444444555677778888899998888876622211 11 1111122112222111 1122
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 002902 492 AWAKVSGL--ELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEI 541 (868)
Q Consensus 492 l~d~i~~L--e~ELeka~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi 541 (868)
+.+..+.| +..+++.+.+++.|+..|+..++|+.-+-+++|.+|+...+|
T Consensus 230 aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkei 281 (561)
T KOG1103|consen 230 AAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEI 281 (561)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333 335688999999999999999999999999998666554443
No 184
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.77 E-value=9 Score=43.08 Aligned_cols=7 Identities=29% Similarity=0.055 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 002902 392 EKLKRLS 398 (868)
Q Consensus 392 eerkk~e 398 (868)
+||.++-
T Consensus 136 eWR~kll 142 (312)
T smart00787 136 EWRMKLL 142 (312)
T ss_pred HHHHHHH
Confidence 3444443
No 185
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.77 E-value=7.1 Score=48.03 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 483 ESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQL 531 (868)
Q Consensus 483 e~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQl 531 (868)
+.++.+...+.+.+..-+.+|-+.+++++.|-.|++-+++.+.+.++.+
T Consensus 465 e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~ 513 (861)
T PF15254_consen 465 ENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSL 513 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444445555555555555555555555444444444
No 186
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.67 E-value=4.6 Score=46.83 Aligned_cols=103 Identities=14% Similarity=0.265 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhchHHHHHH
Q 002902 468 VEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA----ARERIMLRETQLRAFYSTTEEISV 543 (868)
Q Consensus 468 l~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~----erErLq~reqQlkae~ek~EEi~e 543 (868)
+..+..++.+++.++..+...|-+---.+..++.+|+.++.++..+..++.. ....+..+++.+++.++..+..-.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666655555555555555666666666665555554322 222344445555555544433333
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhccccc
Q 002902 544 LFARQQEQLKAMQKTLEDEENYENTSV 570 (868)
Q Consensus 544 ~~k~~~~qLr~LQ~eLE~E~r~rs~a~ 570 (868)
.......++..|+++++..+..-..++
T Consensus 336 ~l~~~~~~~~~L~r~~~~~~~~y~~ll 362 (444)
T TIGR03017 336 ELNRQRDEMSVLQRDVENAQRAYDAAM 362 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677888888887666655555
No 187
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.66 E-value=7.1 Score=41.39 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 310 KELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (868)
Q Consensus 310 k~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq 358 (868)
+........+.++..+...+..-|.+++...++|-+...+++..|..++
T Consensus 62 ~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k 110 (207)
T PF05010_consen 62 KQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYK 110 (207)
T ss_pred hhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555555555555555555544444
No 188
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.66 E-value=4.6 Score=46.88 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~ev 272 (868)
...|+.++..++.++......+...+.+.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55566666666666666666666555553
No 189
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.64 E-value=2.2 Score=46.40 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 391 QEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVE 427 (868)
Q Consensus 391 ~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elE 427 (868)
.+|+.-+-..+++.+.+++.-+.||....+....+++
T Consensus 6 eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQle 42 (307)
T PF10481_consen 6 EEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLE 42 (307)
T ss_pred hHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3555555555666666666666666544333333333
No 190
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.54 E-value=12 Score=43.60 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
|+..+++||.+.-+.+- +..-+.+|..-+++|...--...-...++.+.++.|+..+.+.++.|.+.+
T Consensus 343 Le~kvkeLQ~k~~kQqv----fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr 410 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQV----FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESR 410 (527)
T ss_pred HHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444433322 233333444433333333333333334555555555555555555555544
No 191
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.52 E-value=12 Score=43.56 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKH---EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR 368 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEs---El~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~ 368 (868)
++-+.+|++|+..---+++...+|.-+..+.+- =++.|...++++....-.+-=++..++.-+..|+.-|....+.+
T Consensus 327 ~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~L 406 (527)
T PF15066_consen 327 RKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHL 406 (527)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334555777777766777777777766666554 34555555555555555555555566666667777766666555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002902 369 RVDRENAEADLKAAVQKSQL 388 (868)
Q Consensus 369 ~EElEe~~~eLq~qL~kl~~ 388 (868)
.+-+ ..+.-|+-++.++..
T Consensus 407 qEsr-~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 407 QESR-NEKETLQLELKKIKA 425 (527)
T ss_pred HHHH-hhHHHHHHHHHHHhh
Confidence 4443 233344444444444
No 192
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.50 E-value=13 Score=43.81 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 403 RRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (868)
Q Consensus 403 ~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLe 479 (868)
++.++.......+++....+..++-.++.+...+.+++.++.++.+.+--..++.......+...-+.++.+.++++
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333344444455555566666666666655544444444444333333333333333333
No 193
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.49 E-value=16 Score=44.72 Aligned_cols=12 Identities=8% Similarity=0.039 Sum_probs=7.5
Q ss_pred ccccCCCCCCCC
Q 002902 571 DIDLCVPDGENS 582 (868)
Q Consensus 571 ~~dlnele~~~~ 582 (868)
...|.+||.|.+
T Consensus 645 ~~rlqelerdkN 656 (739)
T PF07111_consen 645 TQRLQELERDKN 656 (739)
T ss_pred HHHHHHHHHhhh
Confidence 467777775443
No 194
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.46 E-value=2.6 Score=39.96 Aligned_cols=66 Identities=26% Similarity=0.332 Sum_probs=30.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAR 489 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~ 489 (868)
..+..|...++.+......|-+.+..|...+...+.......+.+.+++++|.++...|+.++.++
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444333
No 195
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.44 E-value=0.56 Score=48.80 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 422 SSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 422 ~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
++.++..+......+..++..+......++..+......+..++.++..++.++..+..+|.......+.+.+.+.+|..
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555666666666666666666666666666666666666666666666666666666
Q ss_pred HHHH
Q 002902 502 DILA 505 (868)
Q Consensus 502 ELek 505 (868)
++..
T Consensus 159 ~~~~ 162 (194)
T PF08614_consen 159 QLNM 162 (194)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 196
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.43 E-value=12 Score=42.83 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHE 280 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E 280 (868)
+-...|+.++..|+.|++.++...+.+.......++.|.
T Consensus 291 D~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~ 329 (593)
T KOG4807|consen 291 DGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHI 329 (593)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccC
Confidence 346678888889999999888877777766666665554
No 197
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.38 E-value=2.5 Score=52.48 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 415 LQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC 455 (868)
Q Consensus 415 LeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLe 455 (868)
+...|++...+|+.++.++..++..+..+.++......+++
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777777777777777777776666655444444
No 198
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.30 E-value=1.3 Score=46.87 Aligned_cols=66 Identities=26% Similarity=0.342 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
+.+++.++++..+..+++-..+..++.++++++.+|..++..++.|+..++++.....+|+..+++
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 556677778888888888888888888888888888888888888888888887777777776655
No 199
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.25 E-value=13 Score=42.55 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002902 351 KVTIDELKTQLDEERNLRRVDRENAEADL-KAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESL 429 (868)
Q Consensus 351 e~qI~ELq~qLEEEr~~~~EElEe~~~eL-q~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL 429 (868)
+..|++|+++-+-+...++++.+...++. ...|+.+.. .++.+.+++.+..+.-........-..+....+|..+
T Consensus 351 QkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEA----MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsv 426 (593)
T KOG4807|consen 351 QKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEA----MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSV 426 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH----HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHH
Confidence 45567777777766666666654433322 123332222 1222221111111111111112223344555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 430 KLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (868)
Q Consensus 430 ~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLe 479 (868)
+++|+-+..+++..=-..-.|-+.++.++...-+.+.+-.+|-+--.+|.
T Consensus 427 qRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELn 476 (593)
T KOG4807|consen 427 QRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELN 476 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 77777666665554333445555555555555444444444444333333
No 200
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.06 E-value=2.1 Score=41.59 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002902 243 DFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLEe~~~ei~~Lr~ev 272 (868)
.||+++.++..++.++..+....+.++.++
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555544444444
No 201
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=3.4 Score=49.54 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le 500 (868)
.+...|+.+++.++..+..|+.+...|...+.. +.. ...++++++.+|..|+.+|.......++|...+..|.
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~-~~~---~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRD-KVR---KDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444331 111 2455666666666666666666655555555555444
No 202
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=17 Score=43.21 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHh
Q 002902 538 TEEISVLFARQQEQLKAMQKTLEDEE 563 (868)
Q Consensus 538 ~EEi~e~~k~~~~qLr~LQ~eLE~E~ 563 (868)
..+++..++-.-.-++.++.+.+...
T Consensus 579 ~d~~~~~~~~~~~~~~k~~~ev~~~~ 604 (654)
T KOG4809|consen 579 ADMWRETHKPSNETVTKGSTEVTLAE 604 (654)
T ss_pred HHHHHHHhhhhhhHHHhhHHHHHHHH
Confidence 34445555555555566665555533
No 203
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=93.98 E-value=0.16 Score=60.47 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=68.2
Q ss_pred eEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeCCeeccCCCCccc
Q 002902 96 INILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVN 175 (868)
Q Consensus 96 ~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~ 175 (868)
+.|+|.....+|||++. ..|.+..+||....+..+-.. ..+.++-+..|-|-|||.-+++ +..+.
T Consensus 25 ~~~~~~~~~~~~gr~pe---t~i~d~~cs~~qv~l~a~~~~-----------~~v~~k~lg~np~~~~~~~~~~-~~~~~ 89 (526)
T TIGR01663 25 HFIHLDAGALFLGRGPE---TGIRDRKCSKRQIELQADLEK-----------ATVALKQLGVNPCGTGGLELKP-GGEGE 89 (526)
T ss_pred CeeccCCCceEEccCcc---cccchhhhchhhheeeecccC-----------ceEEEEEccCCCcccCceEecC-CCeee
Confidence 46788888899999985 467789999999888765421 2578899999999999999999 77899
Q ss_pred cCCCCEEEeccCCCCCceEEEEEe
Q 002902 176 IDHGDIISFAAPPQHDLAFAFVFR 199 (868)
Q Consensus 176 L~~GD~I~~~~~~~~~~~f~fvf~ 199 (868)
|++||++.+.... + .|.+.|.
T Consensus 90 l~~g~~l~~v~~~-~--~~~~~f~ 110 (526)
T TIGR01663 90 LGHGDLLEIVNGL-H--PLTLQFE 110 (526)
T ss_pred ecCCCEEEEeccc-c--ceeEEee
Confidence 9999999998642 2 3444554
No 204
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.92 E-value=12 Score=44.86 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=7.2
Q ss_pred hhhhhhhhhhh
Q 002902 733 TIRTADLLASE 743 (868)
Q Consensus 733 ~~~~~~~~~~~ 743 (868)
.+-.||-|++-
T Consensus 413 IV~~AD~lsa~ 423 (514)
T TIGR03319 413 LVAAADALSAA 423 (514)
T ss_pred HHHHHHHhcCC
Confidence 67777776543
No 205
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.87 E-value=4.7 Score=38.26 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 299 eELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
.+++.+|..++..++........|-.+..+|...+..+..+....+..+..|+.+|.++.+.|+.++
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444455555555555555555555566666666666666643
No 206
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.84 E-value=22 Score=44.15 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=8.7
Q ss_pred CCCceEEEEeCC
Q 002902 145 SGCSSVCLKDTS 156 (868)
Q Consensus 145 ~~~~~~~L~D~S 156 (868)
.+..+++|.|..
T Consensus 241 fgLPIVtLVDTp 252 (762)
T PLN03229 241 HGFPIVTFIDTP 252 (762)
T ss_pred cCCCEEEEEECC
Confidence 355689999964
No 207
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.80 E-value=9.4 Score=39.49 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELEN 473 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~ 473 (868)
.|-.+.-++.+.-...+.+++.|+.+|.+|.-...-++.+...+++
T Consensus 124 ~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt 169 (178)
T PF14073_consen 124 KLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQT 169 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666677889999999998887777555555554444
No 208
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.80 E-value=8.8 Score=39.12 Aligned_cols=118 Identities=12% Similarity=0.277 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------SISYLHQLKVLRDMLDAKQKELAE 314 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i-------~KklE~QLeELq~kLeE~ek~l~e 314 (868)
.++..+.+++.+++.++...+.+.+.|....+..+.+ +.+..... .|..-.+..+++.+|.-.+..-..
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~r----L~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQR----LAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888888888888888777 44444333 233333344455555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
+..+...|+..+..|..-++-++.....+.-.+.=|...+.++-..+++
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555555544444445444444444444444444444444444433
No 209
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.78 E-value=14 Score=41.46 Aligned_cols=60 Identities=28% Similarity=0.348 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWA 494 (868)
Q Consensus 435 ~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d 494 (868)
.++.++.---.+...|+..|..=...+..+..++..+-..+..|+.+-...+..++....
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~ 272 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNK 272 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444455555555555555555555555555555555555555555444443333
No 210
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=93.69 E-value=11 Score=45.23 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=15.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002902 233 CSPDGPLSLDDFRSLQRSNTELRKQLESQ 261 (868)
Q Consensus 233 g~~~g~vsid~Vr~LE~En~eLr~qLEe~ 261 (868)
+++.+++--+++++|+.-...|..|+.-+
T Consensus 102 s~~~~~~yQerLaRLe~dkesL~LQvsvL 130 (861)
T KOG1899|consen 102 SCPEYPEYQERLARLEMDKESLQLQVSVL 130 (861)
T ss_pred cCCcchHHHHHHHHHhcchhhheehHHHH
Confidence 34445444466777666655555554433
No 211
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.64 E-value=7.7 Score=37.98 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002902 510 LDFERRRL 517 (868)
Q Consensus 510 LE~Ek~rL 517 (868)
.+.++..|
T Consensus 96 w~~qk~~l 103 (132)
T PF07926_consen 96 WEEQKEQL 103 (132)
T ss_pred HHHHHHHH
Confidence 33333333
No 212
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.62 E-value=1.2 Score=46.32 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~q 353 (868)
+..+..++......+..+...+..|+..+.++...|......+..+.+++..++.+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ 159 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444433
No 213
>PRK10698 phage shock protein PspA; Provisional
Probab=93.52 E-value=12 Score=39.94 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 002902 471 LENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQE 550 (868)
Q Consensus 471 lE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~ 550 (868)
....+..|+.++.......+.+...+..|+..|.+++...+.-..|++...-+..++...- -+.....+. .|...-.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~--~~~~~~a~~-~f~rmE~ 173 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD--SGKLDEAMA-RFESFER 173 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchHHH-HHHHHHH
Confidence 4455666666666666666666666666666666666666666666554444333332211 122222222 4444444
Q ss_pred HHHHHhhhHHH
Q 002902 551 QLKAMQKTLED 561 (868)
Q Consensus 551 qLr~LQ~eLE~ 561 (868)
++..|+.+-++
T Consensus 174 ki~~~Ea~aea 184 (222)
T PRK10698 174 RIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHhH
Confidence 55555555554
No 214
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.50 E-value=6.5 Score=42.69 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 436 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR 515 (868)
Q Consensus 436 ~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~ 515 (868)
++.....|++++..++..+............+...|+.++.++..++..+..+.+.-......|..++..++..++.-+.
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445544444444444444555555555566666555555555555555566666666666665555555
Q ss_pred HH
Q 002902 516 RL 517 (868)
Q Consensus 516 rL 517 (868)
+|
T Consensus 125 ~L 126 (246)
T PF00769_consen 125 EL 126 (246)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 215
>PRK10869 recombination and repair protein; Provisional
Probab=93.49 E-value=23 Score=42.92 Aligned_cols=24 Identities=8% Similarity=0.282 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhHHH
Q 002902 538 TEEISVLFARQQEQL-KAMQKTLED 561 (868)
Q Consensus 538 ~EEi~e~~k~~~~qL-r~LQ~eLE~ 561 (868)
...+...|+.....| ..++.+|-+
T Consensus 361 A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 361 AQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333 334444444
No 216
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.41 E-value=12 Score=39.47 Aligned_cols=7 Identities=29% Similarity=0.434 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 002902 499 LELDILA 505 (868)
Q Consensus 499 Le~ELek 505 (868)
++.+|++
T Consensus 194 ~e~~l~~ 200 (221)
T PF04012_consen 194 LEAELEE 200 (221)
T ss_pred HHHHHHH
Confidence 3444433
No 217
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.40 E-value=12 Score=39.44 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 465 KKRVEELENEIKKLREELESEKAAREVA 492 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~~e~eel 492 (868)
++++..+.++...|...+..+..+++++
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 218
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.39 E-value=19 Score=41.60 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 430 KLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKR 467 (868)
Q Consensus 430 ~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqke 467 (868)
..+.......+..++..+..+...|..|...+..++..
T Consensus 328 H~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 328 HEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555566666666666666666666555444
No 219
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.34 E-value=6.2 Score=42.80 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWA 494 (868)
Q Consensus 440 ~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d 494 (868)
.......+..|+..+.+....+..+.......+.+...|+.+|...+........
T Consensus 70 ~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 70 AEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555666666666666666677777777777777666666554443333
No 220
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.33 E-value=6.2 Score=38.36 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 239 LSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 318 (868)
Q Consensus 239 vsid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~ 318 (868)
.++.-|.+|...+..++.++..+...+..+..+ +..+.+++.+ +-...++ +......
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~-----------r~~l~~Eiv~-l~~~~e~-----------~~~~~~~ 69 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAE-----------RDELREEIVK-LMEENEE-----------LRALKKE 69 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH-HHHHHHH-----------HHHHHHH
Confidence 345667777777777777766666665555544 5555555533 1111222 1223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 319 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (868)
Q Consensus 319 k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~ 359 (868)
+..|+.++.+|+.++..+-..+.+-......|+..|.+++.
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655555555555555443
No 221
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=93.18 E-value=23 Score=42.08 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=17.8
Q ss_pred HHHhhhHHHHhhhcccccccccCCCCCCCCcccccc
Q 002902 553 KAMQKTLEDEENYENTSVDIDLCVPDGENSRTIVGE 588 (868)
Q Consensus 553 r~LQ~eLE~E~r~rs~a~~~dlnele~~~~~~~~~~ 588 (868)
+....+..+.+..+++++ ++++=+-++++|.++.+
T Consensus 451 k~R~~eV~~vRqELa~lL-ssvQ~~~e~~~~rkiae 485 (531)
T PF15450_consen 451 KAREREVGAVRQELATLL-SSVQLLKEDNPGRKIAE 485 (531)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhcCCChhhhHHH
Confidence 444555555444444433 33334555777766544
No 222
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.86 E-value=16 Score=39.51 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002902 506 ATRDLDFERRRLKAARERI 524 (868)
Q Consensus 506 a~reLE~Ek~rLq~erErL 524 (868)
.+..|+.=.+||..++||.
T Consensus 131 ti~sleDfeqrLnqAIErn 149 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQAIERN 149 (333)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4444555555565444443
No 223
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.82 E-value=15 Score=39.01 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWK 465 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lq 465 (868)
+..|...+..++..+..|..++..|+.++.+.+.+...+.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555444444333
No 224
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=7.5 Score=46.73 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=4.9
Q ss_pred CCcccceeEE
Q 002902 122 AVSANHCKIY 131 (868)
Q Consensus 122 ~ISr~Hc~I~ 131 (868)
.||+--|++|
T Consensus 194 Gi~~a~F~Vy 203 (652)
T COG2433 194 GISRAEFTVY 203 (652)
T ss_pred ccceeEEEEE
Confidence 3555555554
No 225
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.79 E-value=2.2 Score=53.06 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=55.6
Q ss_pred CCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeCCeeccCCCCccccCCCCE
Q 002902 102 ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDI 181 (868)
Q Consensus 102 ~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~ 181 (868)
.+..+||-..+- +|++....|=.+||+|..... + .+|+.-+..--+||||..+-. +..|.+||.
T Consensus 466 ~~~tlig~~~~~-~i~l~glgi~p~h~vidI~~d-g-----------~l~~~p~~~~R~~VNGs~v~~---~t~L~~GdR 529 (1714)
T KOG0241|consen 466 KDHTLIGLFKSQ-DIQLSGLGIQPKHCVIDIESD-G-----------ELRLTPLLNARSCVNGSLVCS---TTQLWHGDR 529 (1714)
T ss_pred cCceeeccccCc-ceeeecCcccCccceeeeccC-C-----------cEEecccccceeeecCceecc---ccccccCce
Confidence 567789977766 999999999999999987642 1 266666655589999998876 579999999
Q ss_pred EEecc
Q 002902 182 ISFAA 186 (868)
Q Consensus 182 I~~~~ 186 (868)
|-.|.
T Consensus 530 iLwGn 534 (1714)
T KOG0241|consen 530 ILWGN 534 (1714)
T ss_pred EEecc
Confidence 99995
No 226
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.77 E-value=23 Score=41.03 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 427 ESLKLKLDETRERLVTS 443 (868)
Q Consensus 427 EdL~~eLE~~ra~~~~L 443 (868)
++|..+|+.+|-....+
T Consensus 377 eelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 377 EELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555554444333
No 227
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.73 E-value=15 Score=38.72 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQ 257 (868)
Q Consensus 242 d~Vr~LE~En~eLr~q 257 (868)
+-|.+|..++..++..
T Consensus 27 ~lIksLKeei~emkk~ 42 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKK 42 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 228
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.72 E-value=27 Score=43.68 Aligned_cols=23 Identities=9% Similarity=0.184 Sum_probs=12.1
Q ss_pred CCEEEeccCCCCCceEEEEEeecc
Q 002902 179 GDIISFAAPPQHDLAFAFVFRDVS 202 (868)
Q Consensus 179 GD~I~~~~~~~~~~~f~fvf~d~~ 202 (868)
..-|.+..||.+. .-+|+|...+
T Consensus 366 ~cpI~L~~Dp~~~-~ryy~~H~~G 388 (717)
T PF10168_consen 366 SCPIRLHRDPLNP-DRYYCYHNAG 388 (717)
T ss_pred CcceEEEecCCCC-ceEEEEecCc
Confidence 3345555555443 4556666654
No 229
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.70 E-value=25 Score=41.29 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 458 QNVSASWKKRVEELENEIKKLREELESE 485 (868)
Q Consensus 458 k~~~~~lqkel~elE~eIreLeeELe~e 485 (868)
...+..++.++..++.++..++..+...
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444555666666666666665554
No 230
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.58 E-value=17 Score=39.04 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 472 ENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDL 510 (868)
Q Consensus 472 E~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reL 510 (868)
-.++..|+..+..+...+..+.+.+..|...|.++...+
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki 129 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555444444433333
No 231
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.50 E-value=11 Score=37.39 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 508 RDLDFERRRLKAARERIM 525 (868)
Q Consensus 508 reLE~Ek~rLq~erErLq 525 (868)
.+|..+.++-..++++|.
T Consensus 129 tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 232
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.38 E-value=9.3 Score=38.02 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=7.5
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERL 440 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~ 440 (868)
++..+++.|+..++.++..+
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQL 82 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 233
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=92.35 E-value=22 Score=39.77 Aligned_cols=195 Identities=19% Similarity=0.172 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKR 396 (868)
Q Consensus 317 ~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk 396 (868)
....+++.-++++...|+.-......+.....+|...+.+|-.+++.-...+.... +.++ +..++..+.-
T Consensus 109 ea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~-e~ke-l~~ql~~aKl-------- 178 (391)
T KOG1850|consen 109 EAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQI-QKKE-LWEQLGKAKL-------- 178 (391)
T ss_pred HHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHhHHHH--------
Confidence 34456666777777777776666666666666666666666655544222111111 1111 2222221111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 397 LSDAASRRELEQQEVINKLQIAEKQS--------SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRV 468 (868)
Q Consensus 397 ~eee~~~~~EElee~l~KLeE~EKK~--------r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel 468 (868)
....-+......+...+++. +--+++++..=-.++.++.-.-.+...|...|..-...+..+..++
T Consensus 179 ------q~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ 252 (391)
T KOG1850|consen 179 ------QEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEM 252 (391)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 01111111111111111111 1113333333333455555556777888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 469 EELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQL 531 (868)
Q Consensus 469 ~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQl 531 (868)
..+-..|..++.|.-..+..++.+...+- ++.+++ ..++.+...|+..+.+|+--..++
T Consensus 253 ekmtKk~kklEKE~l~wr~K~e~aNk~vL--~la~ek--t~~~k~~~~lq~kiq~LekLcRAL 311 (391)
T KOG1850|consen 253 EKMTKKIKKLEKETLIWRTKWENANKAVL--QLAEEK--TVRDKEYETLQKKIQRLEKLCRAL 311 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888877763 333333 333344445555555555444444
No 234
>PRK00106 hypothetical protein; Provisional
Probab=92.30 E-value=32 Score=41.53 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=5.9
Q ss_pred hhhhhhhhhh
Q 002902 733 TIRTADLLAS 742 (868)
Q Consensus 733 ~~~~~~~~~~ 742 (868)
.+-.||-|++
T Consensus 434 IV~~AD~lsa 443 (535)
T PRK00106 434 IVAAADALSS 443 (535)
T ss_pred HHHHHHHhcc
Confidence 5666666644
No 235
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.28 E-value=9.4 Score=39.23 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 324 HEMEDLNDRLSASMQSCTEANEIMKSQK 351 (868)
Q Consensus 324 sEl~EL~~qLe~~e~~~~eL~k~l~kLe 351 (868)
..+..+..++......+..+.++...+.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 236
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.24 E-value=20 Score=39.03 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 002902 255 RKQLESQVLE 264 (868)
Q Consensus 255 r~qLEe~~~e 264 (868)
...++.....
T Consensus 23 ~~~~e~~~~~ 32 (264)
T PF06008_consen 23 LSSIEDLTNQ 32 (264)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 237
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.23 E-value=21 Score=39.17 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (868)
Q Consensus 312 l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kL 350 (868)
..+|.+-..++++.++.|..++..+.+.+..+.+++.-|
T Consensus 69 k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 69 KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666666666666666555555533
No 238
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.16 E-value=24 Score=39.80 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE 371 (868)
+.+..++.+|+.++.+++..+.-+-.+++++......+..+... .....+..++.++..++..|++.+..-.....+-
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555555555554443333222111 3344555555555555555554443322211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 372 RENAEADLKAAVQKSQLETQEKLK 395 (868)
Q Consensus 372 lEe~~~eLq~qL~kl~~el~eerk 395 (868)
. ...+..+..+.++|.++.....
T Consensus 160 ~-~ERD~yk~K~~RLN~ELn~~L~ 182 (319)
T PF09789_consen 160 V-TERDAYKCKAHRLNHELNYILN 182 (319)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhC
Confidence 1 1123334566666666555443
No 239
>PLN03188 kinesin-12 family protein; Provisional
Probab=92.04 E-value=51 Score=43.25 Aligned_cols=176 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 252 TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 331 (868)
Q Consensus 252 ~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~ 331 (868)
.+|+.+++..+.-..+++.++..-+.- -+|+.+.+.+-++. -..+-..+.+++....+|-++-..+..-+.++..
T Consensus 1068 eelr~eles~r~l~Ekl~~EL~~eK~c----~eel~~a~q~am~g-har~~e~ya~l~ek~~~ll~~hr~i~egi~dvkk 1142 (1320)
T PLN03188 1068 EELRTELDASRALAEKQKHELDTEKRC----AEELKEAMQMAMEG-HARMLEQYADLEEKHIQLLARHRRIQEGIDDVKK 1142 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHHH
Q 002902 332 RLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLE---------TQEKLKRLSDAAS 402 (868)
Q Consensus 332 qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~e---------l~eerkk~eee~~ 402 (868)
.-+.+-..=++ .+-+..|-++|.-|+.+-|.|++.++++=......|....+.++.. +.+...-.+....
T Consensus 1143 aaakag~kg~~-~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~ 1221 (1320)
T PLN03188 1143 AAARAGVRGAE-SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAM 1221 (1320)
T ss_pred HHHHhccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002902 403 RRELEQQEVINKLQIAEKQSSLQVESLKLKL 433 (868)
Q Consensus 403 ~~~EElee~l~KLeE~EKK~r~elEdL~~eL 433 (868)
....+.+.+.+++..+.||...++..|+..|
T Consensus 1222 ~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1222 DAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 240
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.01 E-value=32 Score=40.87 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=7.9
Q ss_pred HHHhhhHHHHhhhccccc
Q 002902 553 KAMQKTLEDEENYENTSV 570 (868)
Q Consensus 553 r~LQ~eLE~E~r~rs~a~ 570 (868)
..|-..|+...+....|+
T Consensus 390 ~klG~~L~~a~~~y~~A~ 407 (475)
T PRK10361 390 SAIGQSLDKAQDNYRQAM 407 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 241
>PRK12704 phosphodiesterase; Provisional
Probab=91.66 E-value=37 Score=40.89 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=9.1
Q ss_pred ccch-hhhhhhhhhhh
Q 002902 729 TMED-TIRTADLLASE 743 (868)
Q Consensus 729 ~~~~-~~~~~~~~~~~ 743 (868)
+++. .+-.||.|++-
T Consensus 414 ~~~a~IV~~ADaLsa~ 429 (520)
T PRK12704 414 SIEAVLVAAADAISAA 429 (520)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 3344 67778866553
No 242
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.65 E-value=29 Score=41.98 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 002902 516 RLKAARERIMLRETQLRAFYSTTEEISVLFAR 547 (868)
Q Consensus 516 rLq~erErLq~reqQlkae~ek~EEi~e~~k~ 547 (868)
+|+..++-++.--.++..|++.....=++|+.
T Consensus 278 ~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k 309 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKDRFIESLRNYLNNYDK 309 (861)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHhhhhhh
Confidence 45555555554444555555555544444444
No 243
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.58 E-value=43 Score=41.42 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 305 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 305 LeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
++..+..++++..++.+...-+++.+.++.+.+......+-+...++.++.+.+..|+-
T Consensus 350 I~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~ 408 (1480)
T COG3096 350 IERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDV 408 (1480)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333444444444444444444555555555555555555555555666665555544
No 244
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.54 E-value=21 Score=38.75 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 469 EELENEIKKLREELESE 485 (868)
Q Consensus 469 ~elE~eIreLeeELe~e 485 (868)
..++.++..++..++..
T Consensus 66 ~~~~~r~~~l~~~i~~~ 82 (302)
T PF10186_consen 66 EELRERLERLRERIERL 82 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 245
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=91.51 E-value=19 Score=37.29 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~ev 272 (868)
|.-++.|+.+|..|+.+...+...+..|..+.
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et 34 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRET 34 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35678888888888888777777777777765
No 246
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.48 E-value=18 Score=36.98 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002902 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (868)
Q Consensus 240 sid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~ev 272 (868)
.+-++.+|..+|..|...+++--.++..++..+
T Consensus 40 ~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 40 HLIDFEQLKIENQQLNEKIEERNKELLKLKKKI 72 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888887777777776665
No 247
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.46 E-value=12 Score=38.37 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (868)
Q Consensus 299 eELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~EL 357 (868)
..+..++++.++.+.++......++.....+...+......+..+....+.+..++.++
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333
No 248
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.40 E-value=40 Score=40.79 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002902 403 RRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSD 444 (868)
Q Consensus 403 ~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LE 444 (868)
.+.++.++.+..|.-..||....++++-.-++..++.+..++
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD 338 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 455666666667777777887777777777776666666654
No 249
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.16 E-value=2.1 Score=45.32 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=6.7
Q ss_pred ccCCCCEEEec
Q 002902 175 NIDHGDIISFA 185 (868)
Q Consensus 175 ~L~~GD~I~~~ 185 (868)
.|..|..|.+.
T Consensus 49 ~l~~G~~v~vl 59 (206)
T PRK10884 49 TLNAGEEVTLL 59 (206)
T ss_pred EEcCCCEEEEE
Confidence 35666666654
No 250
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.08 E-value=47 Score=40.95 Aligned_cols=144 Identities=16% Similarity=0.169 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002902 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREV-AWAKVSGLELDILAATRDLDFE 513 (868)
Q Consensus 435 ~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~ee-l~d~i~~Le~ELeka~reLE~E 513 (868)
.+......|+.....-...+++.......+.+...+.......++.+|......|+. +.+++..++..+..--.+.|..
T Consensus 518 ~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~r 597 (739)
T PF07111_consen 518 QLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKR 597 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555566666666677777777788777777773 3345554444443332333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-----HHHHHHhhhHHHHhhhcccccccccCCCC
Q 002902 514 RRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQ-----EQLKAMQKTLEDEENYENTSVDIDLCVPD 578 (868)
Q Consensus 514 k~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~-----~qLr~LQ~eLE~E~r~rs~a~~~dlnele 578 (868)
..+.+.+--+.-+.+.|+.++.....+-+...+.++ .....|...|-..+|+++-++-.-+..+.
T Consensus 598 LNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l~rl~~~lp 667 (739)
T PF07111_consen 598 LNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNLMLQRLLAVLP 667 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 222222223556667777555533322222222222 23466778888889999988844443333
No 251
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.75 E-value=27 Score=37.60 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 002902 499 LELDILA 505 (868)
Q Consensus 499 Le~ELek 505 (868)
|+.++.+
T Consensus 196 l~~e~a~ 202 (225)
T COG1842 196 LDKEFAQ 202 (225)
T ss_pred HHHHHHH
Confidence 4444443
No 252
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=90.70 E-value=27 Score=37.53 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~ 484 (868)
++.|..+|..+.+.+..+......+...+..-......++..+.+...++.+++..|..
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666666666666666666666666666666666666666655554
No 253
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.50 E-value=35 Score=38.51 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=60.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le 500 (868)
+++.+-+.|..+|-..+.-.+....++..||..+...+.....++..++++..++.+.+++-..+.++..++..-...|-
T Consensus 103 qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 103 QLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777777777777777777788888777766666777888888888888888888888777777777666665
Q ss_pred HHH
Q 002902 501 LDI 503 (868)
Q Consensus 501 ~EL 503 (868)
.|-
T Consensus 183 ~ey 185 (401)
T PF06785_consen 183 DEY 185 (401)
T ss_pred HHh
Confidence 533
No 254
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.36 E-value=15 Score=38.46 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=56.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDE---TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELD 502 (868)
Q Consensus 426 lEdL~~eLE~---~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~E 502 (868)
|.-++.+|.. ++.....+-...+.++.++.+.......+...+.+++.+|.+|+.+...+....+.....+.+|...
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~ 167 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSE 167 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 2333334445556777777777666667777778888888877777766666666666666666665
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 503 ILAATRDLDFERRRL 517 (868)
Q Consensus 503 Leka~reLE~Ek~rL 517 (868)
++++..+++..+-+.
T Consensus 168 ~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 168 AEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
No 255
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.33 E-value=71 Score=41.80 Aligned_cols=9 Identities=33% Similarity=0.239 Sum_probs=4.0
Q ss_pred hhHHHhhhh
Q 002902 803 RQALCEMIG 811 (868)
Q Consensus 803 ~~~~~~~~~ 811 (868)
...|.+-|+
T Consensus 1016 ~~~l~~~i~ 1024 (1047)
T PRK10246 1016 VEAMKERIP 1024 (1047)
T ss_pred HHHHHHhcc
Confidence 344444444
No 256
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.22 E-value=28 Score=36.89 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002902 376 EADLKAAVQKSQLETQEKLKRLS 398 (868)
Q Consensus 376 ~~eLq~qL~kl~~el~eerkk~e 398 (868)
...|...+.+++.++..++.+.+
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHH
Confidence 34455666666666666655555
No 257
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.16 E-value=16 Score=41.98 Aligned_cols=80 Identities=11% Similarity=0.210 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKL 394 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eer 394 (868)
+.........+++++..++..+...+.++..++.++..+++..+.++++-....-+- .-.-..+.+|.+|+.++.+.-
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~--sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG--SPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444455555555555555555555555555555554444322111000 002333567777777666554
Q ss_pred HH
Q 002902 395 KR 396 (868)
Q Consensus 395 kk 396 (868)
-+
T Consensus 349 vr 350 (359)
T PF10498_consen 349 VR 350 (359)
T ss_pred hh
Confidence 33
No 258
>PLN02939 transferase, transferring glycosyl groups
Probab=89.99 E-value=70 Score=41.25 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHH
Q 002902 522 ERIMLRETQLRAFYSTTEEISVLFAR 547 (868)
Q Consensus 522 ErLq~reqQlkae~ek~EEi~e~~k~ 547 (868)
+|++....++.++++.+.+.-..|+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (977)
T PLN02939 365 ERLQASDHEIHSYIQLYQESIKEFQD 390 (977)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333
No 259
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.70 E-value=16 Score=40.16 Aligned_cols=112 Identities=10% Similarity=0.218 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~k 321 (868)
-+|..|+..+..|.++..-..-.++.|+..+...+.+.+.++.+..- |......|- ..+..+...+.+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~-----LkREnq~l~-------e~c~~lek~rqK 85 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSA-----LKRENQSLM-------ESCENLEKTRQK 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh-----hhhhhhhHH-------HHHHHHHHHHHH
Confidence 56667777777776665555555555555544444443332222221 222222222 233334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
|..++.--..++.-++.++....+++.+|++.|.-++.+|+-..
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666666666666666666666666666665444
No 260
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=89.66 E-value=56 Score=39.62 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 449 LLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (868)
Q Consensus 449 ~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~ 484 (868)
.+..+++.|+..+ ...+.++..++..|+.-+..
T Consensus 364 ~i~~~v~~Er~~~---~~~l~~~~~~~~~le~~~~~ 396 (582)
T PF09731_consen 364 EIKEKVEQERNGR---LAKLAELNSRLKALEEALDA 396 (582)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 55555555555555544433
No 261
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.59 E-value=47 Score=38.67 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002902 403 RRELEQQEVINKLQIA 418 (868)
Q Consensus 403 ~~~EElee~l~KLeE~ 418 (868)
..-++|.++++++...
T Consensus 241 ~sPeKL~~~leemk~~ 256 (446)
T KOG4438|consen 241 QSPEKLKEALEEMKDL 256 (446)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3444555555544433
No 262
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.57 E-value=54 Score=39.34 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002902 314 EISRISAEQKHEMEDLNDRLS 334 (868)
Q Consensus 314 el~~~k~kLEsEl~EL~~qLe 334 (868)
....+..+++..+..|..++.
T Consensus 184 ~fl~rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 184 EFLKRTLKKEIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666
No 263
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.42 E-value=5.2 Score=34.43 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 301 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (868)
Q Consensus 301 Lq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq 358 (868)
|+.-|+..-+....+...+.+.....-.+..+|.+++..+.+|..++..|+.++++++
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555666666666677777777777777777777777777776666666654
No 264
>PF14992 TMCO5: TMCO5 family
Probab=89.28 E-value=26 Score=38.73 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEI 475 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eI 475 (868)
+...+.+++.+...++.+++.+.+++................+.+++..+
T Consensus 111 lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 111 LQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777777766666544444444433333333333333
No 265
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=89.14 E-value=10 Score=41.35 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh--------chHHHHHHHHHHHHHHH
Q 002902 484 SEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLR---ETQLRAFY--------STTEEISVLFARQQEQL 552 (868)
Q Consensus 484 ~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~r---eqQlkae~--------ek~EEi~e~~k~~~~qL 552 (868)
.-+.+|+...+.+.+|+.=-=.+..+||.-..+||...++.-++ +.-|+.++ ..+++.++...-+..+|
T Consensus 144 rrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse~~rqeeaensm~~i~ekl 223 (338)
T KOG3647|consen 144 RRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSEPIRQEEAENSMPFIPEKL 223 (338)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhcchhhHHHh
Confidence 33333333334444444433446677777777777776655555 22223333 55666666666666666
Q ss_pred HHHhhh
Q 002902 553 KAMQKT 558 (868)
Q Consensus 553 r~LQ~e 558 (868)
+.=+..
T Consensus 224 ~ee~~~ 229 (338)
T KOG3647|consen 224 IEEDDD 229 (338)
T ss_pred hhhhhh
Confidence 544333
No 266
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.79 E-value=70 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAE 314 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~e 314 (868)
++...+..+++++..+-..+.+
T Consensus 65 ~L~~~ia~~eael~~l~s~l~~ 86 (660)
T KOG4302|consen 65 RLLQEIAVIEAELNDLCSALGE 86 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444444444444443
No 267
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.76 E-value=22 Score=40.81 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002902 411 VINKLQIAEKQSSLQVESLKLKLDETRERLVTS 443 (868)
Q Consensus 411 ~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~L 443 (868)
.+.|+..+||-+..+++.+..++...+..+..+
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEV 285 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555444444433333
No 268
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.66 E-value=19 Score=38.76 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002902 323 KHEMEDLNDRLSASMQSCT 341 (868)
Q Consensus 323 EsEl~EL~~qLe~~e~~~~ 341 (868)
..+++.|+.-+..+.....
T Consensus 59 ~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 269
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.65 E-value=48 Score=37.48 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=55.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 419 EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG 498 (868)
Q Consensus 419 EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~ 498 (868)
.+++|.-++.-+.+-+.++.+...|-+..-....-+..-+.....++.-+..+..+-..++-.|..+.+++-+-.+....
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~ 166 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQT 166 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH
Confidence 45666666666666666666666665555444445555566666666667777777777777777776666666666666
Q ss_pred HHHHHHH
Q 002902 499 LELDILA 505 (868)
Q Consensus 499 Le~ELek 505 (868)
|-+|+..
T Consensus 167 LnrELaE 173 (401)
T PF06785_consen 167 LNRELAE 173 (401)
T ss_pred HHHHHHH
Confidence 6665544
No 270
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.37 E-value=59 Score=38.24 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRIS 319 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k 319 (868)
..+..++..++.++..++.++..+.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444433
No 271
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.77 E-value=74 Score=38.64 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFER 514 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek 514 (868)
.+....+.+|...+...-++...+.++-.-..++.++|..+. .....+..|+.++.++..+|...-
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~----~~~~~~~~Le~~~~~l~~~~~~~A 362 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD----NSEESLEALEKEVKKLKAELLEAA 362 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444445444444444444444444444444444444332 333344444444444444444333
No 272
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.50 E-value=45 Score=36.07 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kL 350 (868)
+.....+++..+...+.++..++.++..+......+
T Consensus 68 L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 68 LEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 273
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.44 E-value=87 Score=39.12 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 464 WKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 516 (868)
Q Consensus 464 lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~r 516 (868)
++-++.+.+++-.-|.-.|.+-.+++..+.+..+.|+.-|.+.-.+|-..-.|
T Consensus 513 ~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar 565 (861)
T PF15254_consen 513 LQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDSAR 565 (861)
T ss_pred HhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 34444444444444444444444455555556666777776666665555444
No 274
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.39 E-value=40 Score=39.48 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 461 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~ 461 (868)
.+..+...+.....++++..+.+++++...+.++
T Consensus 358 ~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~ 391 (493)
T KOG0804|consen 358 LLITEADSLKQESSDLEAEKKIVERKLQQLQTKL 391 (493)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555555544444444444
No 275
>PRK10698 phage shock protein PspA; Provisional
Probab=87.36 E-value=45 Score=35.71 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVE 469 (868)
Q Consensus 425 elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~ 469 (868)
.+..|...++.....+..|......|+.+|.+.+.+...+..+..
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554433333
No 276
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=87.27 E-value=92 Score=39.20 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLET 452 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~ 452 (868)
++.+..+...++..+...+|++.-|++
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344444444444444444444444444
No 277
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.20 E-value=12 Score=39.77 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRER 439 (868)
Q Consensus 426 lEdL~~eLE~~ra~ 439 (868)
+..|+.++..+++.
T Consensus 95 lp~le~el~~l~~~ 108 (206)
T PRK10884 95 VPDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334443333333
No 278
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.05 E-value=68 Score=37.44 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 268 LRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (868)
Q Consensus 268 Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~ 338 (868)
.|.+....-..+...+..+. .+++++.+...++..+++.......+-....++++..+++|...+-....
T Consensus 125 fRe~k~~~~~~~~~q~esll-e~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~ 194 (446)
T KOG4438|consen 125 FREEKMDLYRPFIQQLESLL-ELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFN 194 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444 23355555555555555555554444455555555555555544444333
No 279
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.91 E-value=69 Score=37.39 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC 340 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~ 340 (868)
+..++.-|+.+..+++..-.....+..++..+.-.|..++..++.+.
T Consensus 220 i~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~ 266 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQR 266 (502)
T ss_pred HHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444555555555555555555444433
No 280
>PF13166 AAA_13: AAA domain
Probab=86.81 E-value=90 Score=38.62 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 453 QVCKEQNVSASWKKRVEELENEIKKLREELESE 485 (868)
Q Consensus 453 qLeEEk~~~~~lqkel~elE~eIreLeeELe~e 485 (868)
.+.........++..+..++.++.+|+.++...
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 457 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQLKNT 457 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333334444444444444444444433
No 281
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=86.68 E-value=79 Score=37.83 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 469 EELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 469 ~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
.+.++.+.++++.++.+..+++++.+++....-
T Consensus 408 ~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks 440 (531)
T PF15450_consen 408 NEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKS 440 (531)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344455666666666666667776666665444
No 282
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=83 Score=38.04 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHE 325 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsE 325 (868)
+-++.+|+-++.+.+.+++...-+..++..|+..
T Consensus 335 ~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~ 368 (852)
T KOG4787|consen 335 ELAESQVQHLNTKIERLEKTNDHLNKKIVELEAD 368 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 4466667777777777777666666666666553
No 283
>PLN02939 transferase, transferring glycosyl groups
Probab=86.43 E-value=1.1e+02 Score=39.45 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002902 438 ERLVTSDNKVRLLETQVCK 456 (868)
Q Consensus 438 a~~~~LEkkqr~LE~qLeE 456 (868)
.+..+|.+++..|+..|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 324 DQNQDLRDKVDKLEASLKE 342 (977)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 3445556666666666655
No 284
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.28 E-value=66 Score=36.56 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 450 LETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 450 LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
+...+++........+..+.+.+.++.+++..|..+...|+++...+..|+.+++.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555566666666655665555555555555443
No 285
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=85.90 E-value=74 Score=36.80 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (868)
Q Consensus 448 r~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i 496 (868)
..|.+.+.+.+....+++-.+.....+|..++..+..+..++.+...-+
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~l 295 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPL 295 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4566666666666666666666666666666665555555444444433
No 286
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=85.84 E-value=1.1e+02 Score=38.81 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 002902 277 ERHEKEMKEMKESV 290 (868)
Q Consensus 277 er~E~El~El~E~i 290 (868)
.++++++.+++++.
T Consensus 949 kr~eKeL~~LrKkh 962 (1189)
T KOG1265|consen 949 KRHEKELRDLRKKH 962 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 33445555555444
No 287
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.81 E-value=59 Score=38.67 Aligned_cols=17 Identities=35% Similarity=0.308 Sum_probs=10.9
Q ss_pred CCCCCCCCcCCCCCCCC
Q 002902 646 DIDGVGTGPILEGDPIG 662 (868)
Q Consensus 646 ~~~~~~~~~~~~~~~~~ 662 (868)
|++|+--++..|-++++
T Consensus 560 ~~~~~~~~~~le~~~t~ 576 (596)
T KOG4360|consen 560 DIDVLYRAEDLEEDSTS 576 (596)
T ss_pred cccceeecccccCCCCC
Confidence 44666667777766665
No 288
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=85.74 E-value=53 Score=34.93 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 002902 295 LHQLKVLRDMLDA 307 (868)
Q Consensus 295 E~QLeELq~kLeE 307 (868)
...+.++-.++++
T Consensus 12 ~a~~n~~~dk~ED 24 (219)
T TIGR02977 12 NSNLNALLDKAED 24 (219)
T ss_pred HHHHHHHHHhccC
Confidence 3334444333333
No 289
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.71 E-value=11 Score=33.11 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~q 353 (868)
++..+..|+.+++-+.+.+.-.....+.|-.+......+|..+-..+.+|..++..++.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666555555555555555555555555555444444444444443
No 290
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.55 E-value=62 Score=35.58 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 002902 283 MKEMKES 289 (868)
Q Consensus 283 l~El~E~ 289 (868)
+.+..+.
T Consensus 29 IqdtE~s 35 (258)
T PF15397_consen 29 IQDTEDS 35 (258)
T ss_pred HHhHHhh
Confidence 3333333
No 291
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=84.90 E-value=60 Score=34.86 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l 347 (868)
.|+..|......|...+..+...+..+..+......+..+|.+....+.++...+
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433333333
No 292
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=84.82 E-value=1.2e+02 Score=38.04 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=17.5
Q ss_pred CCccccCCCCCCCCCCCCCcCCCCCCC
Q 002902 635 GDRTCKGGFGSDIDGVGTGPILEGDPI 661 (868)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (868)
|+-+-+|-+---|+|--.+.-+|--|-
T Consensus 1164 p~~~k~gmWyaHFdGq~I~RQm~l~~~ 1190 (1259)
T KOG0163|consen 1164 PDNTKRGMWYAHFDGQWIARQMELHPD 1190 (1259)
T ss_pred CCCCccceEEEecCcHHHHhhheecCC
Confidence 444455666677788777777766553
No 293
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=84.76 E-value=16 Score=34.55 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELe 504 (868)
....-|.+.+-+++++...+...+...+..|+.++.|++.+.=.-+.+.+.|..|+.+|.
T Consensus 12 aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 12 AQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556668899999999999999999999999999998888888888877777775
No 294
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.74 E-value=44 Score=36.12 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 002902 279 HEKEMKEMKESV 290 (868)
Q Consensus 279 ~E~El~El~E~i 290 (868)
|.+|+..|..+.
T Consensus 37 ~~kE~~~L~~Er 48 (230)
T PF10146_consen 37 YRKEMEELLQER 48 (230)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 295
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=84.49 E-value=1.2e+02 Score=38.13 Aligned_cols=45 Identities=27% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 470 ELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 516 (868)
Q Consensus 470 elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~r 516 (868)
.++..+.+.+..|+.+++.+.+-.. .+.-++.. .+.+.+|++..|
T Consensus 769 ~~~e~~~~~ea~leaer~rl~erk~-~R~eerk~-~~~re~EEEr~R 813 (988)
T KOG2072|consen 769 EYEEKLKQFEARLEAERNRLAERKR-ARIEERKQ-AYYREIEEERAR 813 (988)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH-HHHHHHHHHHHH
Confidence 3444455555556555532221111 11122222 566777777664
No 296
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.29 E-value=1.2e+02 Score=37.65 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=12.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 269 RNENRVVVERHEKEMKEMKESVSISYLH 296 (868)
Q Consensus 269 r~evk~i~er~E~El~El~E~i~KklE~ 296 (868)
..+.-+.+.-|+.|++-+....++.++.
T Consensus 829 eqE~~~kkr~~d~EmenlErqQkq~iE~ 856 (1187)
T KOG0579|consen 829 EQEQTNKKRTSDLEMENLERQQKQEIED 856 (1187)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555444443333
No 297
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.08 E-value=1e+02 Score=36.79 Aligned_cols=255 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~ 320 (868)
+...+.+...+..|+.+++....-+..++...-......+.+..=..+.+ |-.+...-+--.++... .++..+...-+
T Consensus 164 le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~erl-k~~~~s~~e~l~kl~~E-qQlq~~~~ehk 241 (613)
T KOG0992|consen 164 LERLRPIESVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENRHLKERL-KIVEESRLESLGKLNSE-QQLQALIREHK 241 (613)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002902 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDA 400 (868)
Q Consensus 321 kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee 400 (868)
-|+..++.|..+++..+..-+.-.-...++..++.++..+---+.+..-.-++..+.++....-.+. .+.++.+.-.
T Consensus 242 llee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~-K~kde~~~n~-- 318 (613)
T KOG0992|consen 242 LLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQVSFELE-KAKDEIKQND-- 318 (613)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccc--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 002902 401 ASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKK-LR 479 (868)
Q Consensus 401 ~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIre-Le 479 (868)
....-++..+..|--+.++.+.+- .....+..+..+....+....+++.....+-.+..+...-..+ ++
T Consensus 319 --~~~~lie~lq~el~~al~~c~eeN--------~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~teqkle 388 (613)
T KOG0992|consen 319 --DKVKLIEELQDELSVALKECREEN--------KIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTEQKLE 388 (613)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 480 EELESEKAAREVAWAKVSGLELDILAATRDL 510 (868)
Q Consensus 480 eELe~e~~e~eel~d~i~~Le~ELeka~reL 510 (868)
+.=...-.........+..|..+++.|++.+
T Consensus 389 elk~~f~a~q~K~a~tikeL~~El~~yrr~i 419 (613)
T KOG0992|consen 389 ELKVQFTAKQEKHAETIKELEIELEEYRRAI 419 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 298
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=83.95 E-value=21 Score=35.12 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 456 KEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL----DILAATRDLDFERRRLKAARERIMLRETQL 531 (868)
Q Consensus 456 EEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~----ELeka~reLE~Ek~rLq~erErLq~reqQl 531 (868)
||+.++.....--+.|+++|.-|++.|+..+..-.+...-++.++. .|..+.++||.++..|..++--...++-|-
T Consensus 5 EWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQE 84 (129)
T PF15372_consen 5 EWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQE 84 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666677777777777777766533333334444333 778899999999999988887777775555
Q ss_pred -HHhhchHHHHHHHHHHHHHHHHHHhhhHH
Q 002902 532 -RAFYSTTEEISVLFARQQEQLKAMQKTLE 560 (868)
Q Consensus 532 -kae~ek~EEi~e~~k~~~~qLr~LQ~eLE 560 (868)
||++ .+++-++..+.+|..+-...+
T Consensus 85 sKAyh----k~ndeRr~ylaEi~~~s~~~~ 110 (129)
T PF15372_consen 85 SKAYH----KANDERRQYLAEISQTSALHQ 110 (129)
T ss_pred HHHHH----HHhHHHHHHHHHHHhhhhhHh
Confidence 6655 444556666666655554433
No 299
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=83.50 E-value=8.1 Score=36.41 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 304 MLDAKQKELAEISRISAEQKHEMEDLNDRL-SASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 304 kLeE~ek~l~el~~~k~kLEsEl~EL~~qL-e~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
.|.+....+..+...+.+++.++.+|...| +++...++...+....++..+..|+.+|.+-.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777778888889999999999887 88888888888887777777777777776543
No 300
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=83.17 E-value=1.1e+02 Score=38.17 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS 349 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~k 349 (868)
+.....++..++..+...|......+.++...+..
T Consensus 173 ~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 173 ALKESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445555555555555555555555554444444
No 301
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.87 E-value=1.4e+02 Score=37.37 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCcCCCC
Q 002902 641 GGFGSDIDGVGTGPILEG 658 (868)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~ 658 (868)
-.|--+.-|-|=+-.++|
T Consensus 395 CIFAYGQTGSGKTyTM~G 412 (670)
T KOG0239|consen 395 CIFAYGQTGSGKTYTMSG 412 (670)
T ss_pred eEEEecccCCCccccccC
Confidence 346666667676666666
No 302
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=82.76 E-value=67 Score=36.47 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=8.0
Q ss_pred CCCCCceEEEEEee
Q 002902 187 PPQHDLAFAFVFRD 200 (868)
Q Consensus 187 ~~~~~~~f~fvf~d 200 (868)
+|.|.....|+++.
T Consensus 27 ~p~Y~s~a~~~v~~ 40 (362)
T TIGR01010 27 SDRYVSESSFVVRS 40 (362)
T ss_pred cccceEEEEEEEec
Confidence 56565555566554
No 303
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.61 E-value=38 Score=36.20 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=13.0
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002902 230 IGICSPDGPLSLDDFRSLQRSNTELRKQLESQ 261 (868)
Q Consensus 230 lg~g~~~g~vsid~Vr~LE~En~eLr~qLEe~ 261 (868)
+.+|-..-++-++=||. +-+|+-.|+-|..+
T Consensus 94 ~PiGHDvEhiD~elvrk-El~nAlvRAGLktL 124 (290)
T COG4026 94 IPIGHDVEHIDVELVRK-ELKNALVRAGLKTL 124 (290)
T ss_pred cCCCCCccccCHHHHHH-HHHHHHHHHHHHHH
Confidence 44555544454433432 33333334444433
No 304
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=1.1e+02 Score=35.73 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccc
Q 002902 536 STTEEISVLFARQQEQLKAMQKTLEDEENYENTS 569 (868)
Q Consensus 536 ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a 569 (868)
...+-..+.|+. .+-.|+..|+.++..+..+
T Consensus 430 ~a~ehv~e~l~~---ei~~L~eqle~e~~~~~~l 460 (542)
T KOG0993|consen 430 DASEHVQEDLVK---EIQSLQEQLEKERQSEQEL 460 (542)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 444444444444 6677888888877666654
No 305
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.32 E-value=1.7e+02 Score=38.06 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLE 264 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~e 264 (868)
+.-|-.++.+|+..|...+.+
T Consensus 406 lKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhh
Confidence 666677777777777766544
No 306
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.18 E-value=63 Score=33.04 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 002902 428 SLKLKLDET 436 (868)
Q Consensus 428 dL~~eLE~~ 436 (868)
=|..+|...
T Consensus 137 yL~~dl~~v 145 (159)
T PF05384_consen 137 YLSGDLQQV 145 (159)
T ss_pred HHHhhHHHH
Confidence 333333333
No 307
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.79 E-value=15 Score=43.28 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVER 278 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er 278 (868)
|-||.|-.+..++|.++..+....+.|+.+++.++.|
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6699998888888888888888877777776655555
No 308
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=81.45 E-value=1.6e+02 Score=37.36 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 472 ENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 472 E~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
+.+...+++.++.+..++.++...+..+..+|+.
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~ 806 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAALSRQIAQ 806 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666666666666666665544
No 309
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=81.39 E-value=1.1e+02 Score=35.34 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHHHHHh
Q 002902 506 ATRDLDFERRRLKAARERIMLRETQL-RAFYSTTEEISVLFARQQEQLKAMQ 556 (868)
Q Consensus 506 a~reLE~Ek~rLq~erErLq~reqQl-kae~ek~EEi~e~~k~~~~qLr~LQ 556 (868)
....|+.....++.++.....-+..+ ..|-+-.+-++.+++.+..++..||
T Consensus 337 ~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 337 TLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45555555555655555555555555 3333556667777777777776665
No 310
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.35 E-value=44 Score=37.95 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAE 314 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~e 314 (868)
++.|+.+++.++.+.+..+.+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544444
No 311
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.30 E-value=1.5e+02 Score=36.93 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~ 341 (868)
|+..|.+|..+|++...-.++++.+..+-+....-.+..+.++.++++
T Consensus 353 YQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLA 400 (1480)
T COG3096 353 YQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLA 400 (1480)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444444444444444333333333333333333333
No 312
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.00 E-value=95 Score=34.34 Aligned_cols=86 Identities=21% Similarity=0.263 Sum_probs=42.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 002902 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELE-------NEIKKLREELESEKAAREVA 492 (868)
Q Consensus 420 KK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE-------~eIreLeeELe~e~~e~eel 492 (868)
+.++.-+..+..+++.++..+.++......|+.+++.-+.-....++++..|+ .++..|+.||..+=..|-+-
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~k 244 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEK 244 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555555555555555554444444444444444333 35555665555555555544
Q ss_pred HHHHHHHHHHHHH
Q 002902 493 WAKVSGLELDILA 505 (868)
Q Consensus 493 ~d~i~~Le~ELek 505 (868)
...+.-|+.+|++
T Consensus 245 fRNl~yLe~qle~ 257 (267)
T PF10234_consen 245 FRNLDYLEHQLEE 257 (267)
T ss_pred HHhHHHHHHHHHH
Confidence 4455555555544
No 313
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.63 E-value=1.1e+02 Score=34.81 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (868)
Q Consensus 317 ~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe 351 (868)
....-|+.+.+.|..|++=...+...++....+++
T Consensus 139 Dlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~ 173 (561)
T KOG1103|consen 139 DLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLE 173 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655555544444444433
No 314
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=80.61 E-value=3.3 Score=50.73 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=8.5
Q ss_pred eCCCCCcccceeEEe
Q 002902 118 IDSNAVSANHCKIYR 132 (868)
Q Consensus 118 i~~~~ISr~Hc~I~~ 132 (868)
|....+|..-+.+..
T Consensus 634 I~p~d~s~~cFWvkv 648 (1102)
T KOG1924|consen 634 IVPRDLSENCFWVKV 648 (1102)
T ss_pred cCccccCccceeeec
Confidence 555567766555533
No 315
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=80.60 E-value=1e+02 Score=34.54 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 002902 245 RSLQRSNTELRKQLESQVLEIDKL---RNENRVVVERHEKEMKEMKESV---------SISYLHQLKVLRDMLDAKQKEL 312 (868)
Q Consensus 245 r~LE~En~eLr~qLEe~~~ei~~L---r~evk~i~er~E~El~El~E~i---------~KklE~QLeELq~kLeE~ek~l 312 (868)
.-|+.+|.+|.+|++=+.++.+=| -++-=.-.+++-+-+.++.+.+ .+-|+.|+.+|+....-++++|
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888776663222 2221122233344455555544 3456666666665555555555
Q ss_pred HH
Q 002902 313 AE 314 (868)
Q Consensus 313 ~e 314 (868)
+.
T Consensus 83 AR 84 (351)
T PF07058_consen 83 AR 84 (351)
T ss_pred HH
Confidence 54
No 316
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.40 E-value=60 Score=31.67 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 305 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (868)
Q Consensus 305 LeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~ 338 (868)
+..++.++..+...+.+++.++.+....|++++.
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444555555555554444444433
No 317
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=80.15 E-value=42 Score=30.40 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 482 LESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 522 (868)
Q Consensus 482 Le~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erE 522 (868)
+.....+.+.+...+-.|+..-.+.+..||.|..+|+.+++
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555666666666777788888887776654
No 318
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.11 E-value=94 Score=33.72 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 388 LETQEKLKRLSDAASRRELEQQEVINKLQIAEKQ------SSLQVESLKLKLDETRERLVTSDNKVRLLE 451 (868)
Q Consensus 388 ~el~eerkk~eee~~~~~EElee~l~KLeE~EKK------~r~elEdL~~eLE~~ra~~~~LEkkqr~LE 451 (868)
.++..|....-+.+..+++.++..+..|....++ ....++.|...+++.+-++..||.-.+-|+
T Consensus 121 ~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~ 190 (233)
T PF04065_consen 121 EEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLD 190 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666666665555543332 233456666666677777666666555543
No 319
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.07 E-value=1.4e+02 Score=35.82 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERI 524 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErL 524 (868)
.++.+|-.++....++...+..+-+.|..++...+.+.+.+..+...+...+..|+.||.-.++-||.+..-|.+.+-.+
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasm 499 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444444444444444555566666666666666666667777777777777788878888888777776666666
Q ss_pred HHHHHHHH
Q 002902 525 MLRETQLR 532 (868)
Q Consensus 525 q~reqQlk 532 (868)
+.++...+
T Consensus 500 NeqL~~Q~ 507 (518)
T PF10212_consen 500 NEQLAKQR 507 (518)
T ss_pred HHHHHHHH
Confidence 65544443
No 320
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.85 E-value=95 Score=33.60 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=3.0
Q ss_pred ccccccc
Q 002902 568 TSVDIDL 574 (868)
Q Consensus 568 ~a~~~dl 574 (868)
.+|.+.|
T Consensus 169 ~~~~~~i 175 (251)
T PF11932_consen 169 EVYQGTI 175 (251)
T ss_pred eEEEEEE
Confidence 3444444
No 321
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=79.61 E-value=85 Score=32.94 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=57.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le 500 (868)
+...-|......|...+..+.....-.+....++.-.+..+..++..+...+.-....+.+|..-..-++.+..++..|.
T Consensus 78 EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~ 157 (188)
T PF05335_consen 78 EAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQ 157 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555555555555566666666666666666666666666666666666667777777
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 501 LDILAATRDLDFERR 515 (868)
Q Consensus 501 ~ELeka~reLE~Ek~ 515 (868)
+.|..++.+|+.-++
T Consensus 158 ~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 158 RQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766655
No 322
>PRK12705 hypothetical protein; Provisional
Probab=79.60 E-value=1.5e+02 Score=35.77 Aligned_cols=128 Identities=19% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 383 VQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSA 462 (868)
Q Consensus 383 L~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~ 462 (868)
+..++.+....+++.. ....++......+++...+..+.++.....++...... ++++...|++.-.....+..
T Consensus 39 ~~~a~~~a~~~~~~~~---~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~---l~~~~~~l~~~~~~l~~~~~ 112 (508)
T PRK12705 39 LQEAQKEAEEKLEAAL---LEAKELLLRERNQQRQEARREREELQREEERLVQKEEQ---LDARAEKLDNLENQLEEREK 112 (508)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002902 463 SWKKRVEELENEIKKLREELESEKA-----AREVAWAKVSG-LELDILAATRDLDFERRR 516 (868)
Q Consensus 463 ~lqkel~elE~eIreLeeELe~e~~-----e~eel~d~i~~-Le~ELeka~reLE~Ek~r 516 (868)
.+..+...++....+...+|+..-. +++.+.+.++. +..++..++++++.+.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~ 172 (508)
T PRK12705 113 ALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADL 172 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 323
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.41 E-value=94 Score=36.21 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 431 LKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA 487 (868)
Q Consensus 431 ~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~ 487 (868)
.++.+++..++.-++++..+-.++.-+++....+.+.+...|.++.+|++|...+..
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555565555555555666666666666666666666666555543
No 324
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.78 E-value=62 Score=30.90 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kL 350 (868)
++..-|.+...+...+.+....-.........++..|..+|..+...+..+...+..+
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666667777777777666666666666665544
No 325
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=78.35 E-value=11 Score=32.89 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEA 343 (868)
Q Consensus 295 E~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL 343 (868)
+..|.+|+.++.=.+..+.+++..+.+.+.++..|..++..+...+.++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555554444444433
No 326
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=78.25 E-value=31 Score=30.55 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEA 343 (868)
Q Consensus 283 l~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL 343 (868)
+--+.+.+.+.+..+.++.+..+..++..........+.|...++.|..++..+......|
T Consensus 8 Ll~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445566666666666666666666666666666555555555555555544433
No 327
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=78.10 E-value=59 Score=30.24 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 458 QNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 458 k~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
..........+..++.++..|..+.....+.|=.+++.+..|..++..+..++.
T Consensus 16 ~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 16 SEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444455666667777777777777777777777777666666655554443
No 328
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=77.90 E-value=2e+02 Score=36.16 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 002902 329 LNDRLSASMQSCTEANEIMK-SQKVTIDELKT 359 (868)
Q Consensus 329 L~~qLe~~e~~~~eL~k~l~-kLe~qI~ELq~ 359 (868)
++..++.+.....++.+.+. +-++++.++++
T Consensus 894 ~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er 925 (1259)
T KOG0163|consen 894 MNSEYDVAVKNYEKLVKRLDSKEQQQIEELER 925 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33344444444444444444 23334444443
No 329
>PRK04406 hypothetical protein; Provisional
Probab=77.77 E-value=18 Score=32.38 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLN 330 (868)
Q Consensus 297 QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~ 330 (868)
.|.+|..++.=.+..+.+|+..+.+.+.++..|.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334434433333333333333333
No 330
>PRK04406 hypothetical protein; Provisional
Probab=77.55 E-value=17 Score=32.43 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 321 kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
.++..+.+|+.++.-.+..+.+|++.+.+++.+|..|+++|.-
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666666655543
No 331
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=77.50 E-value=16 Score=43.66 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 310 KELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 310 k~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
-++.+++.+..+|.+++++++..++++...+-..+-++..|+..|+..++++++-+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455666667777777777777777777777777777777777777777777755
No 332
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.19 E-value=39 Score=36.18 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRK 256 (868)
Q Consensus 242 d~Vr~LE~En~eLr~ 256 (868)
+++..+-.+...++.
T Consensus 114 ~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 114 RRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444444444433
No 333
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.13 E-value=67 Score=32.77 Aligned_cols=99 Identities=23% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 002902 461 SASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLR-------A 533 (868)
Q Consensus 461 ~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQlk-------a 533 (868)
...+...-.+.+.++..|+.+.+.+...|..-....+..+.++..+-..++.+.+.|...++.|+...+++. .
T Consensus 38 Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 38 LESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhhhH
Q 002902 534 FYSTTEEISVLFARQQEQLKAMQKTL 559 (868)
Q Consensus 534 e~ek~EEi~e~~k~~~~qLr~LQ~eL 559 (868)
+...+++-+...+.-+..+.+-++++
T Consensus 118 q~~rlee~e~~l~~e~~~l~er~~e~ 143 (158)
T PF09744_consen 118 QSSRLEEREAELKKEYNRLHEREREL 143 (158)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHH
No 334
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.08 E-value=4 Score=50.07 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhh
Q 002902 31 ASQSSSSHPPHQNPNATSPKKTVVPSHFVFW 61 (868)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (868)
++|-|.|+||.++|+.++|-++..+--++++
T Consensus 538 G~g~pppPppPPlpggag~PPPPpplPg~aG 568 (1102)
T KOG1924|consen 538 GTGPPPPPPPPPLPGGAGPPPPPPPLPGIAG 568 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCcccC
Confidence 4455555556677776555544443333433
No 335
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=76.91 E-value=1.1e+02 Score=33.73 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHH--
Q 002902 475 IKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQL-RAFYSTTEEISVLFARQQEQ-- 551 (868)
Q Consensus 475 IreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQl-kae~ek~EEi~e~~k~~~~q-- 551 (868)
|..+..++++.+..+..+.--...|+..|++-+.+||.-++|| +.|+ -+ =++|..|+..++..+++|..
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRl----e~Lq----siRP~~MdEyE~~EeeLqkly~~Y~ 185 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRL----EALQ----SIRPAHMDEYEDCEEELQKLYQRYF 185 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHH----hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445566666777777777666666 3332 22 34566666666555555443
Q ss_pred -----HHHHhhhHHHHhh
Q 002902 552 -----LKAMQKTLEDEEN 564 (868)
Q Consensus 552 -----Lr~LQ~eLE~E~r 564 (868)
|.-|..+|++-.|
T Consensus 186 l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 186 LRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred HHHhhHHHHHHHHHHHhh
Confidence 4778888888555
No 336
>PRK11519 tyrosine kinase; Provisional
Probab=76.90 E-value=1.5e+02 Score=37.24 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 464 WKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA 519 (868)
Q Consensus 464 lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~ 519 (868)
+..++..+++++.+++.++..+ -........|+++.+-+...|+.-.+++++
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~l----p~~e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRVTAM----PKTQQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433332 233344555666666666666666665543
No 337
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.88 E-value=25 Score=35.70 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 002902 343 ANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 343 L~k~l~kLe~qI~ELq~qL 361 (868)
|...+..++.++..|+..|
T Consensus 114 l~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 338
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=1.6e+02 Score=34.69 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=3.3
Q ss_pred eEEEEEe
Q 002902 193 AFAFVFR 199 (868)
Q Consensus 193 ~f~fvf~ 199 (868)
.|.|+|.
T Consensus 205 df~f~~t 211 (521)
T KOG1937|consen 205 DFNFKLT 211 (521)
T ss_pred cccceec
Confidence 4445444
No 339
>PRK00295 hypothetical protein; Provisional
Probab=76.81 E-value=17 Score=31.82 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 336 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~ 336 (868)
|.+|+.++.=.+..+.+++..+.+.+.++..|.++|..+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443333
No 340
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.65 E-value=1e+02 Score=32.18 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 450 LETQVCKEQNVSASWKKRVEELENEIKKLR 479 (868)
Q Consensus 450 LE~qLeEEk~~~~~lqkel~elE~eIreLe 479 (868)
|..-+..+...+-.+=.++..+.+.+.+++
T Consensus 132 ~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 132 FNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 333333344433333334444444444443
No 341
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=76.63 E-value=1.7e+02 Score=34.63 Aligned_cols=35 Identities=20% Similarity=0.487 Sum_probs=0.0
Q ss_pred eEEEEeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCC
Q 002902 149 SVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPP 188 (868)
Q Consensus 149 ~~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~ 188 (868)
.+||+|-.++ .|.-..- ....-+++|.++.|-.++
T Consensus 41 ~IyI~Dp~~~-v~yELed----~~l~dikd~s~l~l~~~~ 75 (424)
T PF03915_consen 41 EIYIQDPKSG-VFYELED----SNLSDIKDGSVLSLNEEP 75 (424)
T ss_dssp ----------------------------------------
T ss_pred ceEeecCCCC-ceeeecc----cccccccCCeeEEEeccc
Confidence 4777776443 4444333 011245666666666543
No 342
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=76.03 E-value=64 Score=29.55 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002902 474 EIKKLR 479 (868)
Q Consensus 474 eIreLe 479 (868)
.|..++
T Consensus 60 ~i~~~~ 65 (123)
T PF02050_consen 60 AIQQQQ 65 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 343
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.99 E-value=1.4e+02 Score=33.58 Aligned_cols=22 Identities=9% Similarity=-0.083 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 446 KVRLLETQVCKEQNVSASWKKR 467 (868)
Q Consensus 446 kqr~LE~qLeEEk~~~~~lqke 467 (868)
-++...++|.+-+=+..++.++
T Consensus 277 ~qrdanrqisd~KfKl~KaEQe 298 (302)
T PF09738_consen 277 LQRDANRQISDYKFKLQKAEQE 298 (302)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 4455556666655555444443
No 344
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.83 E-value=65 Score=40.34 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 416 QIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQ 453 (868)
Q Consensus 416 eE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~q 453 (868)
+.+......-++=|..+|..++..+...|.+...|.++
T Consensus 259 ~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 259 ARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444557788888888888888888888888775
No 345
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.68 E-value=1.2e+02 Score=35.43 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 436 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAW 493 (868)
Q Consensus 436 ~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~ 493 (868)
..+.+.+++.++.+++++...+.+....+.++.+.+-+.+...+-+|..++.+...+.
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544555555555555555544444444443333
No 346
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.62 E-value=1.2e+02 Score=33.67 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 454 VCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRA 533 (868)
Q Consensus 454 LeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQlka 533 (868)
+...+++....+.++.+.+.+|.+|+.+|..++..--+-+=.....++.|+.|++++. +|+. +-+++.-.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIk----QLkQ------vieTmrss 139 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIK----QLKQ------VIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH------HHHHHHhh
Confidence 3334444444455556666777777777666654332222222222233333333222 2221 11222222
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhhhHHH
Q 002902 534 FYSTTEEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 534 e~ek~EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
-++++..|..-|-.|.-+=++|+.=|-.
T Consensus 140 L~ekDkGiQKYFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 140 LAEKDKGIQKYFVDINIQNKKLESLLQS 167 (305)
T ss_pred hchhhhhHHHHHhhhhhhHhHHHHHHHH
Confidence 2366666666666665555555444444
No 347
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=75.53 E-value=89 Score=31.02 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 486 KAAREVAWAKVSGLELDILAATRDL 510 (868)
Q Consensus 486 ~~e~eel~d~i~~Le~ELeka~reL 510 (868)
+.+.++++-.+.-++..+.+|+..|
T Consensus 83 q~EldDLL~ll~Dle~K~~kyk~rL 107 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKYKERL 107 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344555555555555555554444
No 348
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=75.36 E-value=2e+02 Score=34.98 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=14.7
Q ss_pred CCcccceeEEeeeccCCCCCCCCCCCceEEEEeC
Q 002902 122 AVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (868)
Q Consensus 122 ~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~ 155 (868)
.-||-|.+|...-. -.+....--.....||.|+
T Consensus 205 ~sSRSHsIF~i~Vk-Q~n~e~~~~~~gkLyLVDL 237 (607)
T KOG0240|consen 205 HSSRSHSIFLIHVK-QENVEDKRKLSGKLYLVDL 237 (607)
T ss_pred cccccceEEEEEEE-eccccchhhccccEEEEEc
Confidence 35777776643211 0111111112345788886
No 349
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.26 E-value=1.4e+02 Score=33.07 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=15.0
Q ss_pred CCCEEEeccCCCCCceEEEEEeeccC
Q 002902 178 HGDIISFAAPPQHDLAFAFVFRDVSR 203 (868)
Q Consensus 178 ~GD~I~~~~~~~~~~~f~fvf~d~~~ 203 (868)
..|.|.++.-| ..||.+..-..
T Consensus 148 rpdti~la~ip----~kwf~lkedg~ 169 (445)
T KOG2891|consen 148 RPDTIHLAGIP----CKWFALKEDGS 169 (445)
T ss_pred CCCceeecCCc----ceeeeeccccc
Confidence 56889987643 67887665543
No 350
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=75.14 E-value=1.1e+02 Score=32.31 Aligned_cols=23 Identities=4% Similarity=0.114 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 302 RDMLDAKQKELAEISRISAEQKH 324 (868)
Q Consensus 302 q~kLeE~ek~l~el~~~k~kLEs 324 (868)
...+++.++.+.++...+.+++.
T Consensus 85 ~~~L~~Ae~~~~eA~~~l~e~e~ 107 (205)
T PRK06231 85 EAEINQANELKQQAQQLLENAKQ 107 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333
No 351
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.91 E-value=1.5e+02 Score=33.34 Aligned_cols=12 Identities=25% Similarity=0.083 Sum_probs=6.0
Q ss_pred HHHHHHhhhHHH
Q 002902 550 EQLKAMQKTLED 561 (868)
Q Consensus 550 ~qLr~LQ~eLE~ 561 (868)
.++..++.+|+.
T Consensus 190 a~~~~~~a~l~~ 201 (346)
T PRK10476 190 AQRAAREAALAI 201 (346)
T ss_pred HHHHHHHHHHHH
Confidence 344455555554
No 352
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=74.86 E-value=2.4e+02 Score=35.65 Aligned_cols=30 Identities=27% Similarity=0.260 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 295 LHQLKVLRDMLDAKQKELAEISRISAEQKH 324 (868)
Q Consensus 295 E~QLeELq~kLeE~ek~l~el~~~k~kLEs 324 (868)
+.....+...++++.+.++.....+.++++
T Consensus 1001 E~~mrdhrselEe~kKe~eaiineiee~ea 1030 (1424)
T KOG4572|consen 1001 EIEMRDHRSELEEKKKELEAIINEIEELEA 1030 (1424)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 353
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=74.78 E-value=1.2e+02 Score=31.97 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 433 LDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDF 512 (868)
Q Consensus 433 LE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~ 512 (868)
|.+-+.-+..|+..+++.+..+.++...+...+.-+.....-....+.++..+...+..+...+...+.-...+..+|.+
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777777777777777777777777777777777777777777776666666666666655555555555
Q ss_pred HHHHH
Q 002902 513 ERRRL 517 (868)
Q Consensus 513 Ek~rL 517 (868)
...=|
T Consensus 142 K~qLL 146 (188)
T PF05335_consen 142 KTQLL 146 (188)
T ss_pred HHHHH
Confidence 43333
No 354
>PRK00736 hypothetical protein; Provisional
Probab=74.67 E-value=19 Score=31.54 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 337 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e 337 (868)
|.+|+.++.-.+..+.+++..+.+.+.++..|.++|..+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333
No 355
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.52 E-value=1.3e+02 Score=33.79 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=3.0
Q ss_pred cccccc
Q 002902 628 QEAEFT 633 (868)
Q Consensus 628 ~~~~~~ 633 (868)
|.+.++
T Consensus 263 q~v~i~ 268 (346)
T PRK10476 263 DCATVY 268 (346)
T ss_pred CEEEEE
Confidence 445554
No 356
>PRK04325 hypothetical protein; Provisional
Probab=74.45 E-value=19 Score=32.04 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qL 333 (868)
|.+|+.++.=.+..+.+|+..+.+.+.++..|.++|
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333333333
No 357
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=74.22 E-value=1.9e+02 Score=34.05 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 499 LELDILAATRDLDFERRRLKAARERIM 525 (868)
Q Consensus 499 Le~ELeka~reLE~Ek~rLq~erErLq 525 (868)
.+..|=.|+..|...-..|++.+.|-+
T Consensus 395 VD~kIleak~al~evtt~lrErl~RWq 421 (575)
T KOG4403|consen 395 VDHKILEAKSALSEVTTLLRERLHRWQ 421 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777666655545444
No 358
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=74.07 E-value=3.2 Score=50.76 Aligned_cols=14 Identities=14% Similarity=-0.228 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHHHH
Q 002902 537 TTEEISVLFARQQE 550 (868)
Q Consensus 537 k~EEi~e~~k~~~~ 550 (868)
..++.-..++.||.
T Consensus 334 ~Lk~~~~~~k~Il~ 347 (619)
T PF03999_consen 334 RLKEEYESRKPILE 347 (619)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 359
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=74.05 E-value=1.8e+02 Score=36.54 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLK 518 (868)
Q Consensus 448 r~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq 518 (868)
..+.....+.--.+..++.++..+++++.+++.++..+ -........|+++.+.++..|+.-.+|++
T Consensus 328 ~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~----p~~e~~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 328 AEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAM----PSTQQEVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444555554444433332 23344455566666666666666555543
No 360
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=73.91 E-value=1.3e+02 Score=32.04 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDML 305 (868)
Q Consensus 294 lE~QLeELq~kL 305 (868)
|..++.+|+..|
T Consensus 45 y~~q~~~Lq~qL 56 (206)
T PF14988_consen 45 YAKQTSELQDQL 56 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 361
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=73.89 E-value=1.1e+02 Score=31.15 Aligned_cols=79 Identities=25% Similarity=0.237 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHH
Q 002902 481 ELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLE 560 (868)
Q Consensus 481 ELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE 560 (868)
+|+..+....-+......|+..++.+...++.+...|...+ ...++.....++|.+.......-...+..-+.++|
T Consensus 68 ele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~----~~~~~a~r~~eKf~eL~~~~~~e~~~~~e~~Ee~E 143 (152)
T PF07321_consen 68 ELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEAR----KQLQQARRQQEKFAELAEQEQAEARQQREYQEEQE 143 (152)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777778888888888888888888874433 33344455556667777677766666777777766
Q ss_pred HHh
Q 002902 561 DEE 563 (868)
Q Consensus 561 ~E~ 563 (868)
-|+
T Consensus 144 ~EE 146 (152)
T PF07321_consen 144 QEE 146 (152)
T ss_pred HHH
Confidence 643
No 362
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=73.87 E-value=1.5e+02 Score=32.87 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.8
Q ss_pred HHHHHhhhHHH
Q 002902 551 QLKAMQKTLED 561 (868)
Q Consensus 551 qLr~LQ~eLE~ 561 (868)
++..++..|+.
T Consensus 187 ~~~~~~~~l~~ 197 (327)
T TIGR02971 187 EVKSALEAVQQ 197 (327)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 363
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=73.70 E-value=1.9e+02 Score=33.88 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 488 AREVAWAKVSGLELDILA 505 (868)
Q Consensus 488 e~eel~d~i~~Le~ELek 505 (868)
+..++...+.+|..+|.+
T Consensus 352 EV~~l~~t~~~L~~kL~e 369 (421)
T KOG2685|consen 352 EVHELDDTVAALKEKLDE 369 (421)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444445555555544
No 364
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.55 E-value=96 Score=39.27 Aligned_cols=6 Identities=50% Similarity=0.966 Sum_probs=2.7
Q ss_pred CCCCCC
Q 002902 647 IDGVGT 652 (868)
Q Consensus 647 ~~~~~~ 652 (868)
|||-||
T Consensus 728 IHGkGt 733 (771)
T TIGR01069 728 IHGKGS 733 (771)
T ss_pred EcCCCh
Confidence 444443
No 365
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=73.47 E-value=1.9e+02 Score=33.96 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 325 EMEDLNDRLSASMQSCTEANEIM 347 (868)
Q Consensus 325 El~EL~~qLe~~e~~~~eL~k~l 347 (868)
++.+++.++.........+...+
T Consensus 240 ~~~~ln~ql~~~~~~~~~~~a~l 262 (458)
T COG3206 240 QLSALNTQLQSARARLAQAEARL 262 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 366
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=73.46 E-value=1.2e+02 Score=33.55 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.6
Q ss_pred HHHHhhhHHH
Q 002902 552 LKAMQKTLED 561 (868)
Q Consensus 552 Lr~LQ~eLE~ 561 (868)
|.=|+.+|++
T Consensus 248 l~yLe~qle~ 257 (267)
T PF10234_consen 248 LDYLEHQLEE 257 (267)
T ss_pred HHHHHHHHHH
Confidence 3555666655
No 367
>PRK00295 hypothetical protein; Provisional
Probab=73.43 E-value=21 Score=31.21 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 323 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 323 EsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
+..+.+|+.++.-.+..+.+|++.+.+++.+|..|+++|.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555443
No 368
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.38 E-value=66 Score=40.70 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQL 258 (868)
Q Consensus 244 Vr~LE~En~eLr~qL 258 (868)
+..|..++..|+.+.
T Consensus 224 ~~~ln~~l~~l~~~~ 238 (771)
T TIGR01069 224 IVKLNNKLAQLKNEE 238 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 369
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.27 E-value=98 Score=30.52 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
=|.|..-...+-++|+..-..+...+.+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544444443333333
No 370
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.19 E-value=46 Score=29.35 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 301 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 301 Lq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
|.+....++..+..+..++...+..+..|...=+.....+..+-....+|+.++..|+++|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666666666666666666666666666666666666655555544
No 371
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.09 E-value=1e+02 Score=39.04 Aligned_cols=9 Identities=33% Similarity=0.755 Sum_probs=3.8
Q ss_pred EEEEEeecc
Q 002902 194 FAFVFRDVS 202 (868)
Q Consensus 194 f~fvf~d~~ 202 (868)
|..||.++.
T Consensus 371 ~~~i~~~ig 379 (782)
T PRK00409 371 FKEIFADIG 379 (782)
T ss_pred cceEEEecC
Confidence 334444443
No 372
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.03 E-value=1.1e+02 Score=33.89 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 002902 341 TEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 341 ~eL~k~l~kLe~qI~ELq~qL 361 (868)
.++.+++++|++-|+-++..|
T Consensus 120 KEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555444444
No 373
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=73.00 E-value=24 Score=42.12 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR 515 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~ 515 (868)
+.+..+|..+|.++...++++++.+....-.+.+|.-+|+++.++|++-.+
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444445555566666666655444
No 374
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=72.63 E-value=2e+02 Score=33.77 Aligned_cols=20 Identities=15% Similarity=0.566 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 002902 347 MKSQKVTIDELKTQLDEERN 366 (868)
Q Consensus 347 l~kLe~qI~ELq~qLEEEr~ 366 (868)
++..++.+.+||+.|+.++.
T Consensus 254 Lq~aEqsl~dlQk~Lekar~ 273 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKARE 273 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777766553
No 375
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.60 E-value=80 Score=29.89 Aligned_cols=17 Identities=6% Similarity=0.292 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 312 LAEISRISAEQKHEMED 328 (868)
Q Consensus 312 l~el~~~k~kLEsEl~E 328 (868)
+..+...+..|+.++.+
T Consensus 19 ~~~l~~q~~~le~~~~E 35 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKE 35 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 376
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.55 E-value=1e+02 Score=30.37 Aligned_cols=43 Identities=12% Similarity=0.404 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA 487 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~ 487 (868)
.|+..++.++++-.......+.++.++...+..+..++.....
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444333333
No 377
>PRK02119 hypothetical protein; Provisional
Probab=72.53 E-value=24 Score=31.36 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS 334 (868)
Q Consensus 297 QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe 334 (868)
.|.+|..++.=.+..+.+++..+.+.+.++..|.++|.
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333333
No 378
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.46 E-value=70 Score=33.45 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 002902 343 ANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 343 L~k~l~kLe~qI~ELq~qLE 362 (868)
+-..+..|+.++..|+.+|+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 379
>PRK04325 hypothetical protein; Provisional
Probab=72.41 E-value=24 Score=31.37 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
++..+.+|+.++.-.+..+.+|++.+.+++.+|..|+++|.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666655555555543
No 380
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.38 E-value=1.2e+02 Score=33.54 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 311 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTID 355 (868)
Q Consensus 311 ~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ 355 (868)
.+...+..++.+...+.+...+|..++.....+.+.+..++..+.
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555555555555555544444443
No 381
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=72.29 E-value=2.7e+02 Score=35.07 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 002902 495 KVSGLELDI 503 (868)
Q Consensus 495 ~i~~Le~EL 503 (868)
+|+.|..+|
T Consensus 650 KIe~L~~eI 658 (762)
T PLN03229 650 KIESLNEEI 658 (762)
T ss_pred HHHHHHHHH
Confidence 444444444
No 382
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.08 E-value=1.3e+02 Score=31.50 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.3
Q ss_pred HHHHHH
Q 002902 273 RVVVER 278 (868)
Q Consensus 273 k~i~er 278 (868)
+.++.|
T Consensus 89 ~~l~~R 94 (190)
T PF05266_consen 89 KFLRSR 94 (190)
T ss_pred HHHHHH
Confidence 333333
No 383
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=72.07 E-value=1.1e+02 Score=30.38 Aligned_cols=106 Identities=17% Similarity=0.063 Sum_probs=60.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 002902 391 QEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLET-QVCKEQNVSASWKKRVE 469 (868)
Q Consensus 391 ~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~-qLeEEk~~~~~lqkel~ 469 (868)
.+|+.+|+ .+......|+..+.-|++...+++..- .+.-.-++.+++ .++.....+.+|.++-.
T Consensus 4 nEWktRYE-tQ~E~N~QLekqi~~l~~kiek~r~n~--------------~drl~siR~ye~Ms~~~l~~llkqLEkeK~ 68 (129)
T PF15372_consen 4 NEWKTRYE-TQLELNDQLEKQIIILREKIEKIRGNP--------------SDRLSSIRRYEQMSVESLNQLLKQLEKEKR 68 (129)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCC--------------ccccHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 57888888 344455555554444444443333321 111111122222 12233444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 470 ELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 470 elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
.|+.+++.++=.|+++..+|..+.+..+..-.||..+-..++
T Consensus 69 ~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi~~~s~~~~ 110 (129)
T PF15372_consen 69 SLENQLKDYEWRLEQESKAYHKANDERRQYLAEISQTSALHQ 110 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhHh
Confidence 667777777777888888999888888887777777554333
No 384
>PRK02119 hypothetical protein; Provisional
Probab=71.82 E-value=28 Score=30.98 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
++..+.+|+.++.-.+..+.+|++.+.+++.+|..|+++|.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555554443
No 385
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.68 E-value=90 Score=35.15 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 002902 540 EISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 540 Ei~e~~k~~~~qLr~LQ~eLE~ 561 (868)
.+..-++.++.+++.|+.+|+.
T Consensus 223 Kl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 223 KLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677799999999987
No 386
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.57 E-value=2e+02 Score=34.42 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=7.5
Q ss_pred cCCeeeCCeecc
Q 002902 157 TNGTYVNCERFK 168 (868)
Q Consensus 157 tNGTfVNg~ki~ 168 (868)
.|.+|.+|....
T Consensus 154 ~~~~~~~g~~p~ 165 (508)
T KOG3091|consen 154 GKAPYKFGAPPV 165 (508)
T ss_pred CCCccccCCCCc
Confidence 377777776543
No 387
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=71.47 E-value=1.8e+02 Score=32.74 Aligned_cols=22 Identities=9% Similarity=-0.015 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 484 SEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 484 ~e~~e~eel~d~i~~Le~ELek 505 (868)
.+.+...++.+..+.|++||..
T Consensus 63 dYqrq~~elneEkrtLeRELAR 84 (351)
T PF07058_consen 63 DYQRQVQELNEEKRTLERELAR 84 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566777777755
No 388
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=71.47 E-value=1.8e+02 Score=32.85 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 466 KRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 466 kel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
..-.+++.=+..-.+-...++.+.+.+.+++..|+.|.=-++..+|
T Consensus 229 aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e 274 (391)
T KOG1850|consen 229 AKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWE 274 (391)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444556667777788888888877744444443
No 389
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=71.46 E-value=3.2e+02 Score=35.65 Aligned_cols=50 Identities=12% Similarity=0.308 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 290 VSISYLHQLKVLRDMLDAKQKELA-----EISRISAEQKHEMEDLNDRLSASMQS 339 (868)
Q Consensus 290 i~KklE~QLeELq~kLeE~ek~l~-----el~~~k~kLEsEl~EL~~qLe~~e~~ 339 (868)
+.+-|..|+..++..|+-+++.+. +....+..++.-+.++..++..++..
T Consensus 1064 Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~ 1118 (1439)
T PF12252_consen 1064 ISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKA 1118 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455555555555554432 24555556666666666666665553
No 390
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=71.12 E-value=1.6e+02 Score=32.05 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=55.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLE-TQV-CKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE-~qL-eEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
...+.+..-+..++..+.-+|...-.-. .++ ..|+..++..-.++.+.+.+....+.+-...-..|..+...+..|++
T Consensus 84 ~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek 163 (239)
T PF05276_consen 84 LQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEK 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554443322 111 23677777778888888888888887777777888888888888888
Q ss_pred HHHHHH
Q 002902 502 DILAAT 507 (868)
Q Consensus 502 ELeka~ 507 (868)
++..+|
T Consensus 164 ~lkr~I 169 (239)
T PF05276_consen 164 KLKRAI 169 (239)
T ss_pred HHHHHH
Confidence 776633
No 391
>PRK02793 phi X174 lysis protein; Provisional
Probab=70.92 E-value=25 Score=31.14 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKH 324 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEs 324 (868)
|.+|..++.=.+..+.+++..+.+.+.
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~ 36 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEM 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 392
>PRK00736 hypothetical protein; Provisional
Probab=70.91 E-value=26 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 324 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 324 sEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
..+.+|+.++.-.+..+.+|++.+.+++.+|..|+++|.-
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~ 44 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666665555555555555433
No 393
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=70.62 E-value=44 Score=40.08 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=10.7
Q ss_pred hhhcccccccccCCCCCC
Q 002902 741 ASEVAGSWACSTAPSVHG 758 (868)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~ 758 (868)
.-++...+.+.+.|.++.
T Consensus 348 ~~~~~a~~~~~~vP~~~~ 365 (525)
T TIGR02231 348 SFELPAALNYRAVPSLNS 365 (525)
T ss_pred EEecccceEEEEcccCCc
Confidence 344555666666776653
No 394
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.60 E-value=16 Score=43.05 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 457 EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (868)
Q Consensus 457 Ek~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i 496 (868)
.++++...+.++.+++++|..|+.+++.+.+..+++..++
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KI 106 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRI 106 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3555555566667777777766666665554444444444
No 395
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=70.53 E-value=94 Score=29.05 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 437 RERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIK 476 (868)
Q Consensus 437 ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIr 476 (868)
...+.-|++--+..-....+.......+...+..+..+..
T Consensus 20 ~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~ 59 (99)
T PF10046_consen 20 NEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE 59 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334344444444444333
No 396
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.49 E-value=1.3e+02 Score=33.31 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELE 483 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe 483 (868)
....+++.....+...+++.+.+..++.+.+.+...+..+...+...+.-++..+.
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555555555555444444443
No 397
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=70.49 E-value=2.3e+02 Score=33.43 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 492 AWAKVSGLELDILAATRDLDFERRRLK 518 (868)
Q Consensus 492 l~d~i~~Le~ELeka~reLE~Ek~rLq 518 (868)
..-....|+++++.++.-|+.-..|++
T Consensus 371 ~~~~l~~L~Re~~~~r~~ye~lL~r~q 397 (458)
T COG3206 371 LQVQLRELEREAEAARSLYETLLQRYQ 397 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666666655555554
No 398
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=70.43 E-value=1.4e+02 Score=33.48 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 411 VINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRL 449 (868)
Q Consensus 411 ~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~ 449 (868)
.+.|+..++|-+..+|+.|..+..++...++.+..+.++
T Consensus 260 ~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 260 ALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665555555555444443
No 399
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=70.41 E-value=64 Score=28.61 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 439 RLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGL 499 (868)
Q Consensus 439 ~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~L 499 (868)
.+.+++.=++.+.++..+|+..++.++........+-..|...+..+......+...+..|
T Consensus 8 Ll~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566777777778877777777777776666666666665555555555555443
No 400
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=70.40 E-value=1.7e+02 Score=32.10 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=7.7
Q ss_pred EEeeccCCCCcchhH
Q 002902 197 VFRDVSRSTPTMEGA 211 (868)
Q Consensus 197 vf~d~~~~~~~~~g~ 211 (868)
+|..+.+.++++.|+
T Consensus 39 ~~~s~~~A~~~~tGm 53 (330)
T KOG2991|consen 39 IFGSTTVAPGVRTGM 53 (330)
T ss_pred cccCCCCCCCCccch
Confidence 445555555554443
No 401
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.33 E-value=63 Score=32.75 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 467 RVEELENEIKKLREELESEKA---AREVAWAKVSGLELDILAATRDLDFERR 515 (868)
Q Consensus 467 el~elE~eIreLeeELe~e~~---e~eel~d~i~~Le~ELeka~reLE~Ek~ 515 (868)
++..+..+|.....+|..++. ..+++...+..|+.+...+...|+.+..
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~ 79 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLA 79 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333 3444444444444444444444444444
No 402
>PTZ00121 MAEBL; Provisional
Probab=70.30 E-value=4e+02 Score=36.18 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=7.5
Q ss_pred CCcCcccccccc
Q 002902 606 GEASTTEKHDCD 617 (868)
Q Consensus 606 ~~~~~~~~~~~~ 617 (868)
+++...++|.-.
T Consensus 1844 ~~~~~~~~~~~~ 1855 (2084)
T PTZ00121 1844 EEADAFEKHKFN 1855 (2084)
T ss_pred hhhhHhhhhccc
Confidence 566667777543
No 403
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=70.17 E-value=1.5e+02 Score=31.19 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 500 ELDILAATRDLDFER 514 (868)
Q Consensus 500 e~ELeka~reLE~Ek 514 (868)
..++..+++.++.+-
T Consensus 164 ~~e~a~~ir~~eeea 178 (201)
T PF12072_consen 164 RREAAALIRRIEEEA 178 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455444443
No 404
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=70.14 E-value=60 Score=39.93 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 403 RRELEQQEVINKLQIAEKQS-SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE 481 (868)
Q Consensus 403 ~~~EElee~l~KLeE~EKK~-r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeE 481 (868)
..+..++..+.+|++..++. ..-+++++.+|+.+-..+.-.+..+..|---+.+.-. ..-+..++.+|..|+..
T Consensus 264 ~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-----E~lL~~hE~Ei~~Lk~~ 338 (619)
T PF03999_consen 264 DTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-----EELLELHEEEIERLKEE 338 (619)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHH
Confidence 34445555566665554422 2234666666666544443333333344433333222 22344445555555444
Q ss_pred HHHHH------HHHHHHHHHHHHHHH
Q 002902 482 LESEK------AAREVAWAKVSGLEL 501 (868)
Q Consensus 482 Le~e~------~e~eel~d~i~~Le~ 501 (868)
++..+ ..+..+++....|+.
T Consensus 339 ~~~~k~Il~~v~k~~~l~~~~~~Le~ 364 (619)
T PF03999_consen 339 YESRKPILELVEKWESLWEEMEELEE 364 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 344444444444443
No 405
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.94 E-value=1.1e+02 Score=29.80 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 506 ATRDLDFERRRLKAARERIMLRETQLRAFY 535 (868)
Q Consensus 506 a~reLE~Ek~rLq~erErLq~reqQlkae~ 535 (868)
.+...+....+|....|.|..|++-++.+.
T Consensus 64 vk~~k~~~~~eL~er~E~Le~ri~tLekQe 93 (119)
T COG1382 64 VKVSKEEAVDELEERKETLELRIKTLEKQE 93 (119)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667666777777777775443
No 406
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.90 E-value=28 Score=30.84 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
++..+.+|+.++.-.+..+.+|++.+.+++.+|..|+++|.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555554443
No 407
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=69.48 E-value=1.6e+02 Score=31.33 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSAS 336 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~ 336 (868)
+..++..++.++..|...+...
T Consensus 85 Lrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELACA 106 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHhh
Confidence 4444555555555555555543
No 408
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.98 E-value=25 Score=30.77 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 323 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 323 EsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
+..+.+|+.++.-.+..+.+|++.+.+++.+|..|++++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 409
>PRK11519 tyrosine kinase; Provisional
Probab=68.97 E-value=1.3e+02 Score=37.79 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQ 453 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~q 453 (868)
..+.-++=|..++..++..+...|++..+|..+
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557888888888999999999888888764
No 410
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.93 E-value=1.6e+02 Score=31.07 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred eeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeeccCCCCcchhHHhhhhhhhhcccccccccccccCCCCCC
Q 002902 160 TYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSRSTPTMEGAAAKRKAEEYVSDNKRLKGIGICSPDGPL 239 (868)
Q Consensus 160 TfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~~~~~~~~~g~~~K~~a~~~~s~~~~~k~lg~g~~~g~v 239 (868)
|+.||.-=-. +|.+++...|-+.--....||-||+....
T Consensus 45 TtyNGsYGAS-----LlF~~~eltYYVALfq~k~fWRViKt~d~------------------------------------ 83 (192)
T PF11180_consen 45 TTYNGSYGAS-----LLFYPKELTYYVALFQQKAFWRVIKTQDE------------------------------------ 83 (192)
T ss_pred hhccCCccce-----eeecCCcceeeeeeeecCceeEeeecCCh------------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (868)
Q Consensus 240 sid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k 319 (868)
.+-+.+=..-..--.+|.........|..+. ..++..|..-+.++..++-.+.-....-
T Consensus 84 --~~AE~~Y~~F~~Qt~~LA~~eirR~~LeAQk-------------------a~~eR~ia~~~~ra~~LqaDl~~~~~Q~ 142 (192)
T PF11180_consen 84 --ARAEAIYRDFAQQTARLADVEIRRAQLEAQK-------------------AQLERLIAESEARANRLQADLQIARQQQ 142 (192)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 320 ~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
.+.-..-.....+...++.....+..++..++.+|..|+++.+.
T Consensus 143 ~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 143 QQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 411
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.78 E-value=3.1e+02 Score=34.42 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=26.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 449 LLETQVCKEQ-NVSASWKKRVEELENEIKKLREELESEKA 487 (868)
Q Consensus 449 ~LE~qLeEEk-~~~~~lqkel~elE~eIreLeeELe~e~~ 487 (868)
....-++.+. .....|++++++..+++++++++|-....
T Consensus 765 ~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~ 804 (1104)
T COG4913 765 QHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMS 804 (1104)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3334444444 56667788899888999888887655544
No 412
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.63 E-value=3.7e+02 Score=35.23 Aligned_cols=325 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-----SISYLHQLKVLRDMLDAKQKELAEIS 316 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i-----~KklE~QLeELq~kLeE~ek~l~el~ 316 (868)
++.+.+...+..|+.++.....-.......+.............+.... ......++.++...+......+..+.
T Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1042)
T TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266 (1042)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002902 317 RISAEQKHEMEDLNDRLSASMQSCT-----EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQ---- 387 (868)
Q Consensus 317 ~~k~kLEsEl~EL~~qLe~~e~~~~-----eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~---- 387 (868)
.....+..++..+......+..... .+......+..++..+...+......+...+.. ...++.....+.
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 345 (1042)
T TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK-RAAHVKQQSSIEEQRR 345 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred ----------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHH
Q 002902 388 ----------------LETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQ------VESLKLKLDETRERLVTSDN 445 (868)
Q Consensus 388 ----------------~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~e------lEdL~~eLE~~ra~~~~LEk 445 (868)
..+..|...+. ........+......+......+... +.........+......+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 424 (1042)
T TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISC-QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQG 424 (1042)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002902 446 KVRLLETQVCKEQNVSASWKKRVEELEN-EIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAA---- 520 (868)
Q Consensus 446 kqr~LE~qLeEEk~~~~~lqkel~elE~-eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~e---- 520 (868)
....+...+.- +.....+......+.. .+..+..++......+......+..++.-+....+....+..|.+..
T Consensus 425 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~~~ 503 (1042)
T TIGR00618 425 QLAHAKKQQEL-QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEP 503 (1042)
T ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q ss_pred --------------------------HHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccc
Q 002902 521 --------------------------RERIMLRETQLRAFY----STTEEISVLFARQQEQLKAMQKTLEDEENYENTS 569 (868)
Q Consensus 521 --------------------------rErLq~reqQlkae~----ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~a 569 (868)
..+......++...+ ............+..++..++.+|....+.....
T Consensus 504 cplcgs~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ql~~l~~q~~~lq~ql~ql~~ql~~l~q~wqe~ 582 (1042)
T TIGR00618 504 CPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRS 582 (1042)
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 413
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.57 E-value=87 Score=34.57 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 461 SASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 461 ~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
...++++....-.-|+-|..+|++...++..+...++.|++.+++
T Consensus 18 ~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ea 62 (389)
T KOG4687|consen 18 FSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEA 62 (389)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333333333333345555555555555555555555555554433
No 414
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.46 E-value=1.2e+02 Score=31.65 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERLVTSDNKVRL 449 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~~~LEkkqr~ 449 (868)
.+...++.|+.+++.++..+..++.++..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555444444444433
No 415
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=68.41 E-value=2e+02 Score=31.93 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=4.2
Q ss_pred HHHHhhhHHH
Q 002902 552 LKAMQKTLED 561 (868)
Q Consensus 552 Lr~LQ~eLE~ 561 (868)
+..++..|+.
T Consensus 188 i~~~~~~l~~ 197 (334)
T TIGR00998 188 VQEAKERLKT 197 (334)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 416
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.40 E-value=1.7e+02 Score=31.22 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKH----EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEs----El~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~ 359 (868)
..++..+..++..+...++.+.+++...+..+. ++..|+.+.......+-++......|+.+|..+++
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666555554 33344444444444444444444444444444443
No 417
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.28 E-value=2e+02 Score=31.92 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=4.3
Q ss_pred cccccccC
Q 002902 227 LKGIGICS 234 (868)
Q Consensus 227 ~k~lg~g~ 234 (868)
++++|||.
T Consensus 212 ~~gfg~g~ 219 (445)
T KOG2891|consen 212 FHGFGFGG 219 (445)
T ss_pred eeccccCc
Confidence 35555554
No 418
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.95 E-value=1.6e+02 Score=34.61 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe 351 (868)
..++...++.+..+-..+...+++++.+-.++...|.+.+....++......+-
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~ 231 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYW 231 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555666666666666666666555555554444443
No 419
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.54 E-value=2.8e+02 Score=33.31 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=15.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 002902 535 YSTTEEISVLFARQQEQLKAMQKTLEDEE 563 (868)
Q Consensus 535 ~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~ 563 (868)
+.++.-+...|..+=+.|...+...+...
T Consensus 379 ydkl~~f~~~~~klG~~L~~a~~~y~~A~ 407 (475)
T PRK10361 379 YDKMRLFVDDMSAIGQSLDKAQDNYRQAM 407 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544
No 420
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=67.47 E-value=9.7 Score=42.89 Aligned_cols=7 Identities=0% Similarity=0.178 Sum_probs=1.4
Q ss_pred HHHHHHH
Q 002902 341 TEANEIM 347 (868)
Q Consensus 341 ~eL~k~l 347 (868)
..|+..+
T Consensus 115 S~Lqs~v 121 (326)
T PF04582_consen 115 SDLQSSV 121 (326)
T ss_dssp ---HHHH
T ss_pred HHHHHhh
Confidence 3333333
No 421
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.37 E-value=1.7e+02 Score=30.68 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 328 DLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (868)
Q Consensus 328 EL~~qLe~~e~~~~eL~k~l~kLe~qI~EL 357 (868)
++..++..++..+.+|...+..++..++.+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343444444443333333333
No 422
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.32 E-value=92 Score=27.72 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDR 332 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~q 332 (868)
+...+.-|+.++.+|..+
T Consensus 16 aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 16 AVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 423
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.31 E-value=43 Score=37.93 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 285 EMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (868)
Q Consensus 285 El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l 347 (868)
-..++++.+.+..+..+++..+.+.+.-+++..-+++|+..++.|+.++..+..+++=|.+..
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334455566666677777777777777777777777777777777666666666655554443
No 424
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=67.29 E-value=2.3e+02 Score=32.26 Aligned_cols=8 Identities=13% Similarity=0.032 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 002902 504 LAATRDLD 511 (868)
Q Consensus 504 eka~reLE 511 (868)
.+|+..||
T Consensus 220 ~KYK~~le 227 (319)
T PF09789_consen 220 NKYKSALE 227 (319)
T ss_pred HHHHHHHH
Confidence 34444444
No 425
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.20 E-value=36 Score=32.54 Aligned_cols=46 Identities=28% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 337 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e 337 (868)
..++.++..+...+.++...+.++...-..|..+...|..+|....
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555555555555544443
No 426
>PF15456 Uds1: Up-regulated During Septation
Probab=66.87 E-value=1.1e+02 Score=30.09 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 240 SLDDFRSLQRSNTELRKQLESQVLEID 266 (868)
Q Consensus 240 sid~Vr~LE~En~eLr~qLEe~~~ei~ 266 (868)
++++|..|.++...|..+++....++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567787777777766666666665544
No 427
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.71 E-value=2.3e+02 Score=33.23 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=14.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHh
Q 002902 535 YSTTEEISVLFARQQEQLKAMQ 556 (868)
Q Consensus 535 ~ek~EEi~e~~k~~~~qLr~LQ 556 (868)
.+++.+|.+.....+.++..|+
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 4666666666666666776666
No 428
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=66.66 E-value=1.5e+02 Score=29.82 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002902 305 LDAKQKELAEISRISAEQKH 324 (868)
Q Consensus 305 LeE~ek~l~el~~~k~kLEs 324 (868)
+++.++...++...+.+.+.
T Consensus 62 l~~Ae~~~~ea~~~~~e~e~ 81 (156)
T CHL00118 62 LTKASEILAKANELTKQYEQ 81 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 429
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=66.59 E-value=1.5e+02 Score=30.03 Aligned_cols=7 Identities=0% Similarity=0.003 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002902 330 NDRLSAS 336 (868)
Q Consensus 330 ~~qLe~~ 336 (868)
+.+|..+
T Consensus 68 e~~L~~A 74 (167)
T PRK14475 68 KAEREEA 74 (167)
T ss_pred HHHHHHH
Confidence 3333333
No 430
>PRK00846 hypothetical protein; Provisional
Probab=66.52 E-value=49 Score=29.88 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 332 RLSASMQSCTEANEIMKS 349 (868)
Q Consensus 332 qLe~~e~~~~eL~k~l~k 349 (868)
++.-.+..+.+|++.+.+
T Consensus 21 rlAfQe~tIe~LN~~v~~ 38 (77)
T PRK00846 21 RLSFQEQALTELSEALAD 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 431
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=66.39 E-value=1.6e+02 Score=30.28 Aligned_cols=25 Identities=4% Similarity=0.078 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 300 VLRDMLDAKQKELAEISRISAEQKH 324 (868)
Q Consensus 300 ELq~kLeE~ek~l~el~~~k~kLEs 324 (868)
.+...+.+.++.+.++...+.+.+.
T Consensus 59 ~I~~~l~~Ae~~~~eA~~~~~e~e~ 83 (184)
T CHL00019 59 TILNTIRNSEERREEAIEKLEKARA 83 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 432
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.31 E-value=2e+02 Score=33.70 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
+..+..++.+++.....+...++.|+.+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 433
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.13 E-value=54 Score=30.64 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 444 DNKVRLLETQVCKEQNVS 461 (868)
Q Consensus 444 Ekkqr~LE~qLeEEk~~~ 461 (868)
..+.+.+...++..++..
T Consensus 35 d~~~r~l~~~~e~lr~~r 52 (108)
T PF02403_consen 35 DQERRELQQELEELRAER 52 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 434
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=65.86 E-value=3e+02 Score=33.20 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 349 SQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVES 428 (868)
Q Consensus 349 kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEd 428 (868)
.+..++..|...|+...+.+.. +..........+.+++.++.--+..|++++ .-+-+.+.-|.+...+.+.+++.
T Consensus 438 ~f~~Ec~aL~~rL~~aE~ek~~-l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL----s~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 438 HFYAECRALQKRLESAEKEKES-LEEELKEANQNISRLQDELETTRRNYEEQL----SMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555443222111 212223334567777777777777777433 23333333444444344444444
Q ss_pred HH
Q 002902 429 LK 430 (868)
Q Consensus 429 L~ 430 (868)
|+
T Consensus 513 LK 514 (518)
T PF10212_consen 513 LK 514 (518)
T ss_pred Hh
Confidence 43
No 435
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=65.82 E-value=1.1e+02 Score=28.02 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 429 LKLKLDETRERLVTSDNKVRLLET 452 (868)
Q Consensus 429 L~~eLE~~ra~~~~LEkkqr~LE~ 452 (868)
++.++..+...+..++..++.++.
T Consensus 10 l~~~l~~~~~q~~~l~~~~~~~~~ 33 (106)
T PF01920_consen 10 LNQQLQQLEQQIQQLERQLRELEL 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 436
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=65.81 E-value=1.8e+02 Score=30.43 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 489 REVAWAKVSGLELDILAATRDLDFERRRLK 518 (868)
Q Consensus 489 ~eel~d~i~~Le~ELeka~reLE~Ek~rLq 518 (868)
+-.+|..+..|.+....++..-|..+.+++
T Consensus 143 ll~LWr~v~~lRr~f~elr~~TerdL~~~r 172 (182)
T PF15035_consen 143 LLSLWREVVALRRQFAELRTATERDLSDMR 172 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334455555555544444444444444433
No 437
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.45 E-value=21 Score=42.21 Aligned_cols=8 Identities=0% Similarity=-0.085 Sum_probs=4.0
Q ss_pred eEEEEEee
Q 002902 193 AFAFVFRD 200 (868)
Q Consensus 193 ~f~fvf~d 200 (868)
..||+|..
T Consensus 29 g~~~~~~~ 36 (475)
T PRK13729 29 GALYLSDV 36 (475)
T ss_pred ceEEEecc
Confidence 34555543
No 438
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.45 E-value=2.3e+02 Score=31.54 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 279 HEKEMKEMKESVSIS------YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (868)
Q Consensus 279 ~E~El~El~E~i~Kk------lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~ 352 (868)
|...+..+....... +..-|.+.-......+..+-.+...+...+.++.....+.+.++.....+.......+.
T Consensus 153 ~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~ 232 (297)
T PF02841_consen 153 FLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQ 232 (297)
T ss_dssp HHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH
Q 002902 353 TIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLS-DAASRRELEQQEVINKLQ 416 (868)
Q Consensus 353 qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~e-ee~~~~~EElee~l~KLe 416 (868)
.+.+.++.+++....+.+.++.....+.....++-.....+..++. +........+...+..|+
T Consensus 233 ~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 233 MLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 439
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=65.42 E-value=58 Score=31.39 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 479 REELESEKAAREVAWAKVSGLELDILAATRDLDFERRRL 517 (868)
Q Consensus 479 eeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rL 517 (868)
+.+|+.+++.|-+..+...+|..+|.++...|.+....|
T Consensus 28 ~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkL 66 (111)
T PF12001_consen 28 KTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKL 66 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 356667777777777777777777777666666665555
No 440
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.29 E-value=4e+02 Score=34.33 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=8.2
Q ss_pred CCCcccceeEE
Q 002902 121 NAVSANHCKIY 131 (868)
Q Consensus 121 ~~ISr~Hc~I~ 131 (868)
...||.|+++.
T Consensus 188 ~qssRshAift 198 (913)
T KOG0244|consen 188 AQSSRSHAIFT 198 (913)
T ss_pred hhhhhhhHHHH
Confidence 45789999874
No 441
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.94 E-value=35 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 468 VEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFER 514 (868)
Q Consensus 468 l~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek 514 (868)
+.++|.++-.+...+...+.+.+++.+.+..++.-+.+....||.+-
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666677777777653
No 442
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=64.56 E-value=2e+02 Score=30.67 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (868)
Q Consensus 321 kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~q 353 (868)
.|+..-.++..+.-+.+..+..|..++..++.+
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444333333
No 443
>PRK00846 hypothetical protein; Provisional
Probab=64.44 E-value=58 Score=29.43 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~ 338 (868)
++..|.+|..++.=.+..+.+++..+.+.+..+..|..+|..+..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444444444444433
No 444
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=64.33 E-value=74 Score=29.69 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEI 315 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el 315 (868)
+.+..+++.++++.....+.+..+
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444444444444444444443
No 445
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=64.26 E-value=1.9e+02 Score=30.33 Aligned_cols=11 Identities=27% Similarity=0.172 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 002902 292 ISYLHQLKVLR 302 (868)
Q Consensus 292 KklE~QLeELq 302 (868)
..++..+.+-.
T Consensus 67 ~~~E~E~~~~~ 77 (201)
T PF12072_consen 67 QELERELKERR 77 (201)
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 446
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=63.97 E-value=7.2 Score=36.77 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 272 NRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 345 (868)
Q Consensus 272 vk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k 345 (868)
+...+.+.++|+.++...+ +++.+......++....+..+...|+.++.+....|..+..++..|..
T Consensus 13 ae~~~~~ie~ElEeLTasL-------FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 13 AEQEKEQIESELEELTASL-------FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555 555555555555555555555555555555555554444444444333
No 447
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.95 E-value=1.3e+02 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 466 KRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 466 kel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
.++..++..+.++...+.....++..+...+..|..++.++...|=
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyf 48 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYF 48 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666655555555666666666666666655444443
No 448
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.05 E-value=3e+02 Score=32.20 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHHHHhhhHHHHhhhc
Q 002902 551 QLKAMQKTLEDEENYE 566 (868)
Q Consensus 551 qLr~LQ~eLE~E~r~r 566 (868)
+.=.||++|+.-++.+
T Consensus 515 kv~rlq~eL~~seq~~ 530 (542)
T KOG0993|consen 515 KVCRLQHELLNSEQKP 530 (542)
T ss_pred HHHHHHHHHhhhccCC
Confidence 4456788887755443
No 449
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=63.04 E-value=1.1e+02 Score=27.20 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002902 317 RISAEQKH 324 (868)
Q Consensus 317 ~~k~kLEs 324 (868)
..+++|..
T Consensus 33 ~~IKKLr~ 40 (74)
T PF12329_consen 33 NTIKKLRA 40 (74)
T ss_pred HHHHHHHH
Confidence 33333333
No 450
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=62.97 E-value=2.1e+02 Score=30.33 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV--SISYLHQLKVLRDMLDAKQKELAEISRIS 319 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i--~KklE~QLeELq~kLeE~ek~l~el~~~k 319 (868)
++|-.-.+.+..|...+...... ....-.+.+.+|...+.|+-.++ .+++-.-.=.|-.|...+.+ .....
T Consensus 12 d~l~~Nnr~L~~L~~dl~~~~~~---~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~----~~~~~ 84 (196)
T PF15272_consen 12 DQLDQNNRALSDLNQDLRERDER---YELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKK----SSKQS 84 (196)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhh
Confidence 44444444444454444443222 11222455666666666665555 22333333333344444443 22222
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 320 AEQKHEMEDLND----RLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 320 ~kLEsEl~EL~~----qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
..|+..+..|.. ++......+..+...+-.++.+..+|+...
T Consensus 85 ~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r 130 (196)
T PF15272_consen 85 EDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNER 130 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 223333333332 233334444445555544444444444333
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.97 E-value=3.5e+02 Score=32.89 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002902 417 IAEKQSSLQVESLKLKLDETRERLVTSDNKV 447 (868)
Q Consensus 417 E~EKK~r~elEdL~~eLE~~ra~~~~LEkkq 447 (868)
.+|+.+..++--+-..+..+.+.+..+.++.
T Consensus 655 ~AErdFk~Elq~~~~~~~~L~~~iET~~~~~ 685 (741)
T KOG4460|consen 655 DAERDFKKELQLIPDQLRHLGNAIETVTMKK 685 (741)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455555555444555555555544444333
No 452
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=62.92 E-value=3e+02 Score=32.04 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC 340 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~ 340 (868)
+-.-|+|-.-+.+.++.+++++.. =-+.|+..|...|...+..+
T Consensus 297 i~etLQEERyR~erLEEqLNdlte---LqQnEi~nLKqElasmeerv 340 (455)
T KOG3850|consen 297 IAETLQEERYRYERLEEQLNDLTE---LQQNEIANLKQELASMEERV 340 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333456666666666666555332 12344555554444444444
No 453
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.43 E-value=87 Score=37.21 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 303 DMLDAKQKELAEISRISAEQKHEME 327 (868)
Q Consensus 303 ~kLeE~ek~l~el~~~k~kLEsEl~ 327 (868)
+++.+.++++..+....+.|..+.+
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 454
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.33 E-value=4e+02 Score=33.34 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=6.3
Q ss_pred CCCCCccccccc
Q 002902 18 TPSPSPKEKVNV 29 (868)
Q Consensus 18 ~~~~~~~~~~~~ 29 (868)
.|.|||.+.||.
T Consensus 375 ~p~~p~~~e~~~ 386 (1187)
T KOG0579|consen 375 RPAPPPPQEVNA 386 (1187)
T ss_pred CCCCCCcccchh
Confidence 345555566653
No 455
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=62.20 E-value=3.4e+02 Score=32.53 Aligned_cols=21 Identities=10% Similarity=0.411 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 002902 270 NENRVVVERHEKEMKEMKESV 290 (868)
Q Consensus 270 ~evk~i~er~E~El~El~E~i 290 (868)
...+.+.++|-.++.+..+-.
T Consensus 108 khn~~I~~k~g~~L~~v~~~~ 128 (508)
T PF00901_consen 108 KHNKKIIEKFGNDLEKVYKFM 128 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665555555444
No 456
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=61.92 E-value=1.8e+02 Score=35.24 Aligned_cols=59 Identities=29% Similarity=0.302 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 458 QNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRR 516 (868)
Q Consensus 458 k~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~r 516 (868)
......|-+++++|-.+-.-|+.||+..+.+..++.++++.|+.||.+++.+++.-++.
T Consensus 321 NiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 321 NIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556678889999999999999999999999999999999999999988888776554
No 457
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=61.84 E-value=1.9e+02 Score=29.48 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002902 307 AKQKELAEIS 316 (868)
Q Consensus 307 E~ek~l~el~ 316 (868)
+.++...++.
T Consensus 64 ~Ae~~~~ea~ 73 (167)
T PRK08475 64 EIQEKLKESK 73 (167)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 458
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.77 E-value=3.5e+02 Score=32.47 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002902 326 MEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRE 405 (868)
Q Consensus 326 l~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~ 405 (868)
.++|..|+..-..........++.+...+.+|+ ..+-..-.+.++..++..+|..+|=++--.+.-.+++-. .+.-.+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~-~L~~~E 413 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGY-ALTPDE 413 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cCCccH
Q ss_pred HHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002902 406 LEQQEVINKLQIAEK---QSSLQVESLKLKLDETRERLVTSD------NKVRLLETQVCKEQNVSASWKKRVEELENEI- 475 (868)
Q Consensus 406 EElee~l~KLeE~EK---K~r~elEdL~~eLE~~ra~~~~LE------kkqr~LE~qLeEEk~~~~~lqkel~elE~eI- 475 (868)
++|...+.-|-.... ++..+|..|...+...+..+...+ .+..++..-+..++..+..+-.-+....+.|
T Consensus 414 E~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 414 EELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIK 493 (508)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 476 KKLREELESEKAARE 490 (868)
Q Consensus 476 reLeeELe~e~~e~e 490 (868)
..|.+.++..+...+
T Consensus 494 ~~l~E~~~~~~~~~~ 508 (508)
T KOG3091|consen 494 HQLIEDLEICRKSLE 508 (508)
T ss_pred HHHHhhHHHHhhhcC
No 459
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=61.59 E-value=1.9e+02 Score=29.46 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE-lEe~~~eLq~qL~kl~~el~ee 393 (868)
+..+...+...+.+.......+.....+....+...+.+..++......+.....++ +.++..+.++.+..++.++..+
T Consensus 47 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e 126 (175)
T PRK14472 47 LEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE 126 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHH
Q 002902 394 LKRLSDAASRRELEQ 408 (868)
Q Consensus 394 rkk~eee~~~~~EEl 408 (868)
+.+...+.....-++
T Consensus 127 ~~~a~~~l~~~i~~l 141 (175)
T PRK14472 127 KRRALDVLRNEVADL 141 (175)
T ss_pred HHHHHHHHHHHHHHH
No 460
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=61.56 E-value=2.6e+02 Score=30.94 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAA------------REVAWAK 495 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e------------~eel~d~ 495 (868)
+-+......+.......+....+..++.........++.++..++.++..+...+..+..- +......
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~ 190 (301)
T PF14362_consen 111 DQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQ 190 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 002902 496 VSGLELDILAATRDLDFERRRLK----AARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAM 555 (868)
Q Consensus 496 i~~Le~ELeka~reLE~Ek~rLq----~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~L 555 (868)
+..++.++..++.+++.....+. .++.++......+.+.......-..=|-.....|..|
T Consensus 191 ~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 191 LDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGFLARLEALWEL 254 (301)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHH
No 461
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=61.34 E-value=21 Score=41.09 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLE 323 (868)
+..+.........++.+....+..+..+++.++.-......++.... +++......|..++++++..+..+...+..++
T Consensus 86 ~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~-~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 86 LEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLK-KKLENIDESLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp --------------------------------H--------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 324 HEMEDLNDRLSASMQSCTEANEIMKS 349 (868)
Q Consensus 324 sEl~EL~~qLe~~e~~~~eL~k~l~k 349 (868)
..+..+..++..+...+.++....++
T Consensus 165 ~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 165 QAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
No 462
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=61.30 E-value=1.5e+02 Score=35.34 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 002902 422 SSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA-------AREVAWA 494 (868)
Q Consensus 422 ~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~-------e~eel~d 494 (868)
...+++.|+.+..-.+.++..||.+++.+.+++-+.-+..+..++.+.+...++..-=..|..--+ +|--++-
T Consensus 602 me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv~KKe~t~le~ 681 (790)
T PF07794_consen 602 MEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEG 681 (790)
T ss_pred hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 495 KVSGLEL------DILAATRDLDFERRRLKAARERIMLRETQLR 532 (868)
Q Consensus 495 ~i~~Le~------ELeka~reLE~Ek~rLq~erErLq~reqQlk 532 (868)
....++. .|-++.-+|-.|+-||+.++..+..+-+-++
T Consensus 682 qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~ck~ke 725 (790)
T PF07794_consen 682 QAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARCKSKE 725 (790)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhhhhcc
No 463
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.95 E-value=1.2e+02 Score=26.95 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 438 ERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 438 a~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
..+..|+.++..+=.++.-.+..+..++.+-..+..+...|+.+...++.++......++.|=..|+.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 464
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.58 E-value=1.2e+02 Score=26.91 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 449 LLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKA 519 (868)
Q Consensus 449 ~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~ 519 (868)
.|+..|++-...++.|..+-..|...-..+..-+-.++....++...+..|...++.+...++.-..+|..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 465
>PRK14154 heat shock protein GrpE; Provisional
Probab=60.42 E-value=1.9e+02 Score=30.93 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLE 323 (868)
+..|+.++..|+.++..+.....++..+..+.+.|..+++.++...- ...-+..|-
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a------------------------~e~~~~~LL 109 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFG------------------------SKQLITDLL 109 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 324 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 324 sEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
--+.+|.+.|.........+..-+.-++.-.+.|..-|+.
T Consensus 110 pVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k 149 (208)
T PRK14154 110 PVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAK 149 (208)
T ss_pred hHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
No 466
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=60.42 E-value=1.4e+02 Score=27.52 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 436 TRERLVTSDNKVRLLETQVCK---EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDF 512 (868)
Q Consensus 436 ~ra~~~~LEkkqr~LE~qLeE---Ek~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~ 512 (868)
+.+.+..+++++..|+..+.. -......+..++..+...-..|..+|.........+......+-..|..++..+..
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 002902 513 ERRR 516 (868)
Q Consensus 513 Ek~r 516 (868)
+..|
T Consensus 86 vL~r 89 (89)
T PF13747_consen 86 VLDR 89 (89)
T ss_pred HhcC
No 467
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=60.39 E-value=3e+02 Score=31.20 Aligned_cols=221 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--
Q 002902 329 LNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRREL-- 406 (868)
Q Consensus 329 L~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~E-- 406 (868)
+...++..+..+-.+.+++.+|... -+.....+-+++.++....+..-..+.++.+.-+++. -++..-+
T Consensus 1 ~~~~~Eed~~~l~~I~~eLEkLN~s--------TDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~-k~I~ksrpf 71 (426)
T KOG2008|consen 1 MEQGLEEDEEVLPRIQGELEKLNQS--------TDDINRRETELEDARQKFRETQVEATVKLDELVKKIG-KAIEKSRPF 71 (426)
T ss_pred CccccchhhHHHHHHHHHHHHhccc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccH
Q ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 407 -EQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVR--LLETQVCKEQNVSASWKKRVEELENEIKKLREELE 483 (868)
Q Consensus 407 -Elee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr--~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe 483 (868)
++...-..++....++..+++..+.-|.-++.++.-++.... .--.-...|...+...-..+.+.+.+-...+.=-.
T Consensus 72 ~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Ha 151 (426)
T KOG2008|consen 72 WELKRVERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHA 151 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHH
Q 002902 484 SEKAAREVAWAKVSGLELDILA----------ATRDLDFERRRLKAARERIMLRETQLRAFY-STTEEISVLFARQQEQL 552 (868)
Q Consensus 484 ~e~~e~eel~d~i~~Le~ELek----------a~reLE~Ek~rLq~erErLq~reqQlkae~-ek~EEi~e~~k~~~~qL 552 (868)
.--..|-.++..+++++++... .+..|=.....++.-+.-|+.++++.|-.+ ......+..-..|-.+.
T Consensus 152 s~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeR 231 (426)
T KOG2008|consen 152 STAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEER 231 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHhhhH
Q 002902 553 KAMQKTL 559 (868)
Q Consensus 553 r~LQ~eL 559 (868)
+. |..+
T Consensus 232 ss-qs~~ 237 (426)
T KOG2008|consen 232 SS-QSAM 237 (426)
T ss_pred hh-hhcc
No 468
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=60.33 E-value=3.5e+02 Score=32.07 Aligned_cols=164 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 002902 392 EKLKRLSDAASRRELEQQEVINKL--QIAEKQSSLQVESLKLKLDETRERLVTSDNKVR--LLETQVCKEQNVSASWKKR 467 (868)
Q Consensus 392 eerkk~eee~~~~~EElee~l~KL--eE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr--~LE~qLeEEk~~~~~lqke 467 (868)
+.-..+...++..-+++.+.++.. ++..+-.+.+++.+..++...+..+....++.. .=+.+.+---..+..|+.+
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~q 294 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQ 294 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh-chHHHH
Q 002902 468 VEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDF-----ERRRLKAARERIMLRETQLRAFY-STTEEI 541 (868)
Q Consensus 468 l~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~-----Ek~rLq~erErLq~reqQlkae~-ek~EEi 541 (868)
+..++.++..|..-+..-...+..+...|..|+.+|.+.+..+-. -...+-.+.++|.++..-....+ ......
T Consensus 295 La~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaL 374 (434)
T PRK15178 295 LAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTL 374 (434)
T ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 002902 542 SVLFARQQEQLKAM 555 (868)
Q Consensus 542 ~e~~k~~~~qLr~L 555 (868)
+..+-+-.++++-|
T Consensus 375 E~AR~EA~RQ~~YL 388 (434)
T PRK15178 375 QQGKLQALRERQYL 388 (434)
T ss_pred HHHHHHHHhhhhhe
No 469
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=59.79 E-value=57 Score=31.38 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (868)
Q Consensus 283 l~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~ 338 (868)
+.++...+ .+++.++..+...+.++...+.++.+....|.-+...|..+|.....
T Consensus 3 k~elfd~l-~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 3 KKEIFDAL-DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 470
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=59.74 E-value=1.8e+02 Score=28.38 Aligned_cols=94 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE-lEe~~~eLq~qL~kl~~el~ee 393 (868)
+..+..++...+.+.......++....+....+...+.+..++......+.....+. +.....+....+..++..+..+
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e 113 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQ 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHH
Q 002902 394 LKRLSDAASRRELEQ 408 (868)
Q Consensus 394 rkk~eee~~~~~EEl 408 (868)
+.+...++....-++
T Consensus 114 ~~~a~~~l~~~v~~l 128 (140)
T PRK07353 114 KQAALAQLEQQVDAL 128 (140)
T ss_pred HHHHHHHHHHHHHHH
No 471
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=59.74 E-value=3e+02 Score=31.07 Aligned_cols=149 Identities=10% Similarity=0.192 Sum_probs=0.0
Q ss_pred ccCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 232 ICSPDGPLSL--DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQ 309 (868)
Q Consensus 232 ~g~~~g~vsi--d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~e 309 (868)
+|.+.|-+|+ .-+..+-+.-..-+..--.+...++.++.. +.++...- +...+..+...+.+..
T Consensus 22 vGGp~Gl~ml~AgA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~k-----------l~~Ms~~q---l~~~~~k~~~si~~q~ 87 (301)
T PF06120_consen 22 VGGPPGLVMLGAGAWYYFYQNAEQARQEAIEFADSLDELKEK-----------LKEMSSTQ---LRANIAKAEESIAAQK 87 (301)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------HHhcCHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002902 310 KELAEISRISAEQKHEMEDLNDR------------------LSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (868)
Q Consensus 310 k~l~el~~~k~kLEsEl~EL~~q------------------Le~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE 371 (868)
+.+.++..++..|+..+..+... +......++++...+...+.++......+..-...+...
T Consensus 88 ~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~ 167 (301)
T PF06120_consen 88 RAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDL 167 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 372 RENAEADLKAAVQKSQLETQEKL 394 (868)
Q Consensus 372 lEe~~~eLq~qL~kl~~el~eer 394 (868)
.+....-+....-....-...+.
T Consensus 168 ~~~~~~~ir~~~~e~~~~~~sl~ 190 (301)
T PF06120_consen 168 TEQRIDLIRQKAAEQAGAYNSLK 190 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 472
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.58 E-value=1.8e+02 Score=28.47 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 002902 409 QEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVC--------------------------------- 455 (868)
Q Consensus 409 ee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLe--------------------------------- 455 (868)
+..+..+......++.+++.|...+..+...+.++..-+..++.--.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 456 ------KEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELD 502 (868)
Q Consensus 456 ------EEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~E 502 (868)
....+..-+.+.+..++..+..+...+......++.+...+..+..+
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=59.11 E-value=19 Score=40.60 Aligned_cols=124 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 251 NTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLN 330 (868)
Q Consensus 251 n~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~ 330 (868)
+..++.+|..++.....|...+..+..+ +.++.-.+ ..+...|.+++..|..+...+..+...+..+...+.+|.
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~----iSdLss~L-~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS 104 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSST----ISDLSSDL-QDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLS 104 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002902 331 DRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLK 380 (868)
Q Consensus 331 ~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq 380 (868)
..+......+..|+..+..+...|..|+..+ ......-..++.+...|+
T Consensus 105 ~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdV-St~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 105 STLSDHSSSISDLQSSVSALSTDVSNLKSDV-STQALNITDLESRVKALE 153 (326)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHhhhhhhhhhhhhhhhh-hhhcchHhhHHHHHHHHh
No 474
>PRK14139 heat shock protein GrpE; Provisional
Probab=59.08 E-value=1.8e+02 Score=30.54 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~k 321 (868)
..+..|+.++..|+.++.++.....++..+..+.+.|..+++.++..-- .+.-+.+|-.=++.+++.+.........
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a---~~~~~~~LLpv~DnLerAl~~~~~~~~~ 108 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFA---IESFAESLLPVKDSLEAALADESGDLEK 108 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHhcccchHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 322 QKHEMEDLNDRLSAS 336 (868)
Q Consensus 322 LEsEl~EL~~qLe~~ 336 (868)
+-.-+.-...+|...
T Consensus 109 l~~Gv~mi~k~l~~v 123 (185)
T PRK14139 109 LREGVELTLKQLTSA 123 (185)
T ss_pred HHHHHHHHHHHHHHH
No 475
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.72 E-value=1.4e+02 Score=27.03 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002902 301 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA 375 (868)
Q Consensus 301 Lq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~ 375 (868)
|..-|+-.+.+...+......+...-.++..++..-...+..+...+-.|+..-..++...|+|...++.+++.+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 476
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.04 E-value=1.3e+02 Score=34.20 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 002902 280 EKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS--------MQSCTEANEIMKSQK 351 (868)
Q Consensus 280 E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~--------e~~~~eL~k~l~kLe 351 (868)
+.|-.++.+.. +++++.-.....++++..+....-...+.+....+.++...|... ...++++.+.+++.+
T Consensus 3 ~eEW~eL~~ef-q~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 3 EEEWEELQKEF-QELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhH
Q 002902 352 VTIDELKTQL 361 (868)
Q Consensus 352 ~qI~ELq~qL 361 (868)
..+.+++.-|
T Consensus 82 ~~l~DmEa~L 91 (330)
T PF07851_consen 82 CQLFDMEAFL 91 (330)
T ss_pred hhHHHHHhhC
No 477
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=58.01 E-value=62 Score=34.14 Aligned_cols=122 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhhhcccccccccccccCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 002902 215 RKAEEYVSDNKRLKGIGICSPDGPLSLDD--FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSI 292 (868)
Q Consensus 215 ~~a~~~~s~~~~~k~lg~g~~~g~vsid~--Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~K 292 (868)
+..+.+|..++. ++..|++..| .+ +.+|++++.+|...|............. -...-..+++
T Consensus 72 ~rlG~~~~s~~~-~gTdfS~~~~----~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~-----------~~~~~~lvk~ 135 (195)
T PF12761_consen 72 SRLGRGGKSYKE-KGTDFSATEG----TDWEEVRLKRELAELEEKLSKVEQAAESRRSD-----------TDSKPALVKR 135 (195)
T ss_pred HHhccccCCCCC-CCCCCCCCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------CcchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~ 352 (868)
.++.-|+=.+..|.+.+.........+..+..+|..+..|+..++.-+..-..++..|++
T Consensus 136 e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 136 EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 478
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.81 E-value=3.3e+02 Score=30.96 Aligned_cols=235 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 256 KQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSA 335 (868)
Q Consensus 256 ~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~ 335 (868)
.+++.=..++.....+|...+.........+.+.. +..+.-+..+...-++.++..........+++....++...-..
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~-~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~ 79 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELEEKQ-KEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEE 79 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------------------------------------
Q 002902 336 SMQSCTEANEIMKSQKVTIDELKTQLDEERNLR----------------------------------------------- 368 (868)
Q Consensus 336 ~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~----------------------------------------------- 368 (868)
++..++++.=.+......+..|.+.-=.|.+..
T Consensus 80 a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~~L 159 (344)
T PF12777_consen 80 AEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQRL 159 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHHHH
Q ss_pred -----HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHHHHHHHHHH
Q 002902 369 -----RVDRENAEADLK-------------AAVQKSQLETQEKLKRLSDA----------ASRRELEQQEVINKLQIAEK 420 (868)
Q Consensus 369 -----~EElEe~~~eLq-------------~qL~kl~~el~eerkk~eee----------~~~~~EElee~l~KLeE~EK 420 (868)
...-+.....++ ...+.+=.-+-.|...+. . .....++++..+...+....
T Consensus 160 ~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~-~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~ 238 (344)
T PF12777_consen 160 KNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMV-KYYEVNKEVEPKRQKLEEAEAELEEAEEQLA 238 (344)
T ss_dssp HHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVA 492 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel 492 (868)
..+..+..+..++..++..+....+++..++..+..-+.++..+.+-+..|..+..+=.+.+..+......+
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
No 479
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=57.66 E-value=2e+02 Score=28.40 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
+..+...++.+...+..+-...-.++..|.+.+..+...-..+..+..++..+..++......|. -..|-..|..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s-----~~~l~~~L~~ 103 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYS-----PDALLARLQA 103 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 002902 506 ATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAM 555 (868)
Q Consensus 506 a~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~L 555 (868)
+..+.|.+-..| .+......--+..|+..|-+.-...-....+...|
T Consensus 104 ~~~e~eeeSe~l---ae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~EkL 150 (150)
T PF07200_consen 104 AASEAEEESEEL---AEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEEKL 150 (150)
T ss_dssp HHHHHHHHHHHH---C-S-SSSHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
No 480
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.55 E-value=1.8e+02 Score=31.19 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~EL 503 (868)
.++-.+-.++-.++++ ..+-+....+.++++--.. +..+.+.+..++.-|++++++....++.+...+.+|.+..
T Consensus 114 ~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 114 RRLHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 504 LAATRDLDFERRRLKAARERIM 525 (868)
Q Consensus 504 eka~reLE~Ek~rLq~erErLq 525 (868)
+...++|+.-..+.+.-+++++
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHh
No 481
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=57.46 E-value=3.1e+02 Score=30.45 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002902 423 SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG---- 498 (868)
Q Consensus 423 r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~---- 498 (868)
...+..+...+...+..+..+....+..+............++..+..++.++..++.++...+..|+........
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS 133 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVS 133 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhhhHH
Q 002902 499 ------LELDILAATRDLDFERRRLKAARERIMLRETQLRAFY--STTEEISVLFARQQEQLKAMQKTLE 560 (868)
Q Consensus 499 ------Le~ELeka~reLE~Ek~rLq~erErLq~reqQlkae~--ek~EEi~e~~k~~~~qLr~LQ~eLE 560 (868)
...++..++..|+.-+..+..++..++..+.++.... ...............+|...+..|+
T Consensus 134 ~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 134 ASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.39 E-value=62 Score=30.92 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 312 l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
..++-.++..|+.++..+..+|.++...+.++..+-..|+.+...|...|.+
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=57.03 E-value=2.4e+02 Score=29.05 Aligned_cols=94 Identities=9% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE-lEe~~~eLq~qL~kl~~el~ee 393 (868)
+..+..++...+.+.......+.....+.+..+...+.+..++..+...+.....++ +.+...+...-+..++.++..+
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~e 135 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASA 135 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHH
Q 002902 394 LKRLSDAASRRELEQ 408 (868)
Q Consensus 394 rkk~eee~~~~~EEl 408 (868)
+.+...+.....-++
T Consensus 136 k~~a~~~l~~~i~~l 150 (184)
T PRK13455 136 EAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHH
No 484
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=56.64 E-value=1.5e+02 Score=31.53 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002902 459 NVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA----ATRDLDFERRRLKAARERIMLRETQLRAF 534 (868)
Q Consensus 459 ~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek----a~reLE~Ek~rLq~erErLq~reqQlkae 534 (868)
+.++-.-.+.-..+.+-..+..++..+.....++..+|..+...++. .-.+.+.+.++++++++.|....+|+|++
T Consensus 171 SsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQ 250 (259)
T KOG4001|consen 171 SSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQ 250 (259)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hc
Q 002902 535 YS 536 (868)
Q Consensus 535 ~e 536 (868)
++
T Consensus 251 Le 252 (259)
T KOG4001|consen 251 LE 252 (259)
T ss_pred Hh
No 485
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=56.16 E-value=5.3e+02 Score=32.84 Aligned_cols=304 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 002902 256 KQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND--RL 333 (868)
Q Consensus 256 ~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~--qL 333 (868)
...+..+...+.+..-++..... +-+..--.+...+++-.-+....-+....+++.++--++. |+
T Consensus 839 ~dfe~IIed~dc~~eit~ee~eq-------------kElLele~E~egkldglieakeaeenkihK~egEltcaE~i~q~ 905 (1424)
T KOG4572|consen 839 RDFEIIIEDGDCLKEITKEEGEQ-------------KELLELELENEGKLDGLIEAKEAEENKIHKKEGELTCAECIKQM 905 (1424)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhh-------------HHHHHHhhhcccccchHHHHHHHHhhHHHHhhhhhHHHHHHHHc
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002902 334 SASMQSCTEANEIMK-----SQKVTIDELKTQLDEERNLRRVDRENA---EADLKAAVQKSQLETQEKLKRLSDAASRRE 405 (868)
Q Consensus 334 e~~e~~~~eL~k~l~-----kLe~qI~ELq~qLEEEr~~~~EElEe~---~~eLq~qL~kl~~el~eerkk~eee~~~~~ 405 (868)
...+..+.+..+... .-.+.|.+|+.-|+..--..++.+.+. .++++.--...+.+++.+.+..-+-.....
T Consensus 906 kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~l 985 (1424)
T KOG4572|consen 906 KDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKAL 985 (1424)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 406 LEQQE-----VINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKV-RLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (868)
Q Consensus 406 EElee-----~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkq-r~LE~qLeEEk~~~~~lqkel~elE~eIreLe 479 (868)
+.++. ....++-..+-.+.++|.++.+++.....+..++..+ +.-+.++-+.+-+......-...++-++.-.+
T Consensus 986 e~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~e 1065 (1424)
T KOG4572|consen 986 ECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIE 1065 (1424)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHH
Q 002902 480 EELESEKAAREVAWAKVSGLEL-----DILAATRDLDFERRRLKAARERIMLRETQLRAFY--STTEEISVLFARQQEQL 552 (868)
Q Consensus 480 eELe~e~~e~eel~d~i~~Le~-----ELeka~reLE~Ek~rLq~erErLq~reqQlkae~--ek~EEi~e~~k~~~~qL 552 (868)
.+++..+.-+.+-..+...... +++.++.+.+.-..-.+..-+.-++-+-..+.-| ++.-.+.+.|..|-..-
T Consensus 1066 aemdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheeeS 1145 (1424)
T KOG4572|consen 1066 AEMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEES 1145 (1424)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhhc
Q ss_pred HHHhhhHHHHhhhccccccc
Q 002902 553 KAMQKTLEDEENYENTSVDI 572 (868)
Q Consensus 553 r~LQ~eLE~E~r~rs~a~~~ 572 (868)
-.+-+.+..-.+--..|+++
T Consensus 1146 ~ifdaa~nKiakiHe~AfEi 1165 (1424)
T KOG4572|consen 1146 GIFDAAGNKIAKIHEIAFEI 1165 (1424)
T ss_pred chHHHHHHHHHHHHHHHHHH
No 486
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.97 E-value=65 Score=35.32 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 443 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 443 LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
.+.++..+++++.--......++.++..++.+|.+|+-.++...-+++.+.++-+.+-.+|....+.++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 487
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=55.80 E-value=2.3e+02 Score=31.54 Aligned_cols=94 Identities=15% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH--------
Q 002902 441 VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE-----------ELESEKAAREVAWAKVSGLEL-------- 501 (868)
Q Consensus 441 ~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLee-----------ELe~e~~e~eel~d~i~~Le~-------- 501 (868)
+.-......++.+.-+.+... .+.++..|++++.+|.. .|......+-.....-+.+..
T Consensus 19 ~~~~~e~~~l~~~f~elkeq~--yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe 96 (291)
T KOG4466|consen 19 ANEESEMSNLEKQFSELKEQM--YKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYE 96 (291)
T ss_pred hhhhhhhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 002902 502 -DILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTE 539 (868)
Q Consensus 502 -ELeka~reLE~Ek~rLq~erErLq~reqQlkae~ek~E 539 (868)
||++|+.+||..+.-|+ +.|+..+.++++.++.+.
T Consensus 97 ~E~~aAk~e~E~~~~lLk---e~l~seleeKkrkieeeR 132 (291)
T KOG4466|consen 97 CEIKAAKKEYESKKKLLK---ENLISELEEKKRKIEEER 132 (291)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
No 488
>COG5293 Predicted ATPase [General function prediction only]
Probab=55.38 E-value=4.3e+02 Score=31.53 Aligned_cols=243 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHH-H-HHHHHHHHHHHHHHHHHHHH
Q 002902 310 KELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK---SQKVTIDELKTQLDE-E-RNLRRVDRENAEADLKAAVQ 384 (868)
Q Consensus 310 k~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~---kLe~qI~ELq~qLEE-E-r~~~~EElEe~~~eLq~qL~ 384 (868)
+.++....+..+|++..+..+..-...-..+.-+.+... +.+.++..-+.-|.. . -.....+.++....++.+|.
T Consensus 193 ~~~~~~~dKi~~l~s~kKl~e~~~~~~ig~L~slee~e~~e~~~~~~v~~k~~tln~f~~~a~~y~e~ee~vn~v~~~I~ 272 (591)
T COG5293 193 KCAAEYYDKIQELESKKKLAELLRKTWIGSLDSLEEIETTELRKQDEVNKKQATLNTFDFHAQDYAETEELVNTVDERIA 272 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 002902 385 KSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQV-ESLKLKLDETRERLVTS-DNKVRLLETQVCKEQNVSA 462 (868)
Q Consensus 385 kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~el-EdL~~eLE~~ra~~~~L-Ekkqr~LE~qLeEEk~~~~ 462 (868)
.++++--..+....-.......+..-....++-.....-..+ +..++.++..++-...+ +.+..-|...+.+.+....
T Consensus 273 e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk 352 (591)
T COG5293 273 ELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLK 352 (591)
T ss_pred HHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 002902 463 SWKKRVEELENEIKKLREELESEKA--AREVAWAKVSGLELDILAATRDLDFERR---------RLKAARERIMLRETQL 531 (868)
Q Consensus 463 ~lqkel~elE~eIreLeeELe~e~~--e~eel~d~i~~Le~ELeka~reLE~Ek~---------rLq~erErLq~reqQl 531 (868)
.....++.+-.+..+.=+=|..-.. .|..+.+.+.++..+|.....+.+.-++ .|+.+..++..+.---
T Consensus 353 ~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lkhe~l~~~~r~y~e 432 (591)
T COG5293 353 EVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLKHECLDLEERIYTE 432 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHhh-chHHHHHHHHHHHHHHH
Q 002902 532 RAFY-STTEEISVLFARQQEQL 552 (868)
Q Consensus 532 kae~-ek~EEi~e~~k~~~~qL 552 (868)
.++. +-+.++...|++..+.+
T Consensus 433 ~q~q~~~~~~~~~lF~~~~r~~ 454 (591)
T COG5293 433 VQQQCSLFASIGRLFKEMIREV 454 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 489
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=55.17 E-value=2.4e+02 Score=28.44 Aligned_cols=94 Identities=5% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE-lEe~~~eLq~qL~kl~~el~ee 393 (868)
+..+...+...+.+.......+.....+....+...+.+...+..+...+.....++ ++++..+...-++.++.++..+
T Consensus 37 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~e 116 (164)
T PRK14473 37 LNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQE 116 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHH
Q 002902 394 LKRLSDAASRRELEQ 408 (868)
Q Consensus 394 rkk~eee~~~~~EEl 408 (868)
+.+...++....-++
T Consensus 117 k~~a~~~L~~~i~~l 131 (164)
T PRK14473 117 RQRMLSELKSQIADL 131 (164)
T ss_pred HHHHHHHHHHHHHHH
No 490
>PF15456 Uds1: Up-regulated During Septation
Probab=55.02 E-value=2.2e+02 Score=28.03 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEM----------KESVSISYLHQLKVLRDMLDAKQ 309 (868)
Q Consensus 240 sid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El----------~E~i~KklE~QLeELq~kLeE~e 309 (868)
++++|..|.++...|..+++....++. ++..++..-.. +..+ ......+-+.++.....++++..
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~s----l~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~ 94 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHS----LSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELA 94 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 310 KELAEISRISAEQKHEM 326 (868)
Q Consensus 310 k~l~el~~~k~kLEsEl 326 (868)
..+..++.+...+...+
T Consensus 95 ~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 95 QELWKLENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHHHHHHH
No 491
>PF15294 Leu_zip: Leucine zipper
Probab=54.99 E-value=3.4e+02 Score=30.28 Aligned_cols=238 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002902 319 SAEQKHEMEDLNDRLSA-SMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRL 397 (868)
Q Consensus 319 k~kLEsEl~EL~~qLe~-~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eerkk~ 397 (868)
+.+....+.++..-+.. -.+.+.+.......+...+..|+..+..+.+ .|+.+...--.-.+..+=.++..|.-++
T Consensus 3 r~kr~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~ve---sEL~N~~htn~lllrql~~qAek~~lkl 79 (278)
T PF15294_consen 3 RSKREQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVE---SELINTSHTNVLLLRQLFSQAEKWYLKL 79 (278)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHH-------------HHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 398 SDAASRREL-EQQEVINKLQIAE-------------KQSSLQVES-----LKLKLDETRERLVTSDNKVRLLETQVCKEQ 458 (868)
Q Consensus 398 eee~~~~~E-Elee~l~KLeE~E-------------KK~r~elEd-----L~~eLE~~ra~~~~LEkkqr~LE~qLeEEk 458 (868)
..+...... ++-+.+.+++..+ -++....+. |..++.++++.+..|..+.+.++.+.-..-
T Consensus 80 ~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l 159 (278)
T PF15294_consen 80 QTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSAL 159 (278)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 459 NVSASWKKRVEELEN----------------EIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 522 (868)
Q Consensus 459 ~~~~~lqkel~elE~----------------eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erE 522 (868)
....+++..+.+++. ++..|+..|..++.+++...........-|+......-.+.-+++.++.
T Consensus 160 ~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~ 239 (278)
T PF15294_consen 160 DEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLS 239 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhH
Q 002902 523 RIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTL 559 (868)
Q Consensus 523 rLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eL 559 (868)
...-.+..+=.+-..|..+..-...-..++.+|...|
T Consensus 240 ~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 240 LAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred cchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
No 492
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=54.84 E-value=3.6e+02 Score=31.06 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 002902 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKR-VEELENEIKKLRE----------ELESEKAAREVAWAK 495 (868)
Q Consensus 427 EdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqke-l~elE~eIreLee----------ELe~e~~e~eel~d~ 495 (868)
.+.+..++.+++.+...++..+.++.++...++.+.+.+.. ++....++..... +++.-...+..+...
T Consensus 87 ~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~ 166 (352)
T COG1566 87 RDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAA 166 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002902 496 VSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYS 536 (868)
Q Consensus 496 i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQlkae~e 536 (868)
+..-.....+.+..++.+....+.++..+.....+.+-.++
T Consensus 167 ~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~ 207 (352)
T COG1566 167 LAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLE 207 (352)
T ss_pred HHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhh
No 493
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=54.27 E-value=5.9e+02 Score=32.77 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 002902 252 TELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDM-----------------LDAKQKELAE 314 (868)
Q Consensus 252 ~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~k-----------------LeE~ek~l~e 314 (868)
.+++.....+...++.+...+..+..|+..--..+.+-. ..++.-+.++--. +.++.+...+
T Consensus 553 ~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~-se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~E 631 (984)
T COG4717 553 SRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQ-SEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAE 631 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKL 394 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EElEe~~~eLq~qL~kl~~el~eer 394 (868)
+.-++..|-.+......+++.+-.-+ +....--+.--....+....+......+-.+++.+.--.+..-.++.++..-+
T Consensus 632 L~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~ 710 (984)
T COG4717 632 LTHQVARLREEQAAFEERVEGLLAVL-EAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHR 710 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 002902 395 KRLSDAASRRELEQQE---VINKLQIAEKQSSLQVESLKLKLDETRERLVTS----------DNKVRLLETQVCKEQNVS 461 (868)
Q Consensus 395 kk~eee~~~~~EElee---~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~L----------Ekkqr~LE~qLeEEk~~~ 461 (868)
+++.+-.....-.-+. ...+-....+..++++..+...|++.....-+| |+....++..++..-..+
T Consensus 711 kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~ 790 (984)
T COG4717 711 KEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEV 790 (984)
T ss_pred HHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 002902 462 ASWKKRVEELENEIKKLRE--ELESEKAAREVAWAKVSGLEL---DILAATRDLDFERRRLKAAR 521 (868)
Q Consensus 462 ~~lqkel~elE~eIreLee--ELe~e~~e~eel~d~i~~Le~---ELeka~reLE~Ek~rLq~er 521 (868)
..+...+..+..+|..|+. .+..++..+..+...+...-+ .|.-++.-++.-.+.++..+
T Consensus 791 ~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~r 855 (984)
T COG4717 791 EELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERR 855 (984)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 494
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=54.22 E-value=4.7e+02 Score=31.58 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 404 RELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELE 483 (868)
Q Consensus 404 ~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe 483 (868)
..++.++...+.++..+.+...-.++...-..+......+++.++..+....+.+..-...+........++. +
T Consensus 204 KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe~ae~~~~~edek~a------E 277 (489)
T PF05262_consen 204 KEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPEPAEAQQKKEDEKLA------E 277 (489)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcchhhhhhhhHHHHHH------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002902 484 SEKAAREVAWAKVSGLELDILAATRD-LDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDE 562 (868)
Q Consensus 484 ~e~~e~eel~d~i~~Le~ELeka~re-LE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E 562 (868)
..+.+.+.+...+...+.+..+++.+ .+....+.+.+-....-+....+.+.....+ ++|..++..
T Consensus 278 ~~kkE~EKaq~E~~k~~Eea~kake~~aee~k~Eak~~~~~ae~K~~Eaq~er~~iAk-------------D~qk~~~e~ 344 (489)
T PF05262_consen 278 EEKKEAEKAQEEAKKKQEEAKKAKEQAAEELKQEAKSQEKEAEKKEEEAQQERKEIAK-------------DQQKLIEEQ 344 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH-------------HHHHHHhhh
Q ss_pred h
Q 002902 563 E 563 (868)
Q Consensus 563 ~ 563 (868)
+
T Consensus 345 ~ 345 (489)
T PF05262_consen 345 K 345 (489)
T ss_pred h
No 495
>PRK14151 heat shock protein GrpE; Provisional
Probab=53.93 E-value=2.5e+02 Score=29.23 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLE 323 (868)
+..|+.++..|+.++.++.....++..+..+.+.|.++++.++.+-. ...-...|-
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a------------------------~~~~~~~LL 77 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFA------------------------LEKFAGDLL 77 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 324 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 324 sEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
--+.+|...|.........+..-+..++.-.+.+..-|+.
T Consensus 78 pv~DnlerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~k 117 (176)
T PRK14151 78 PVVDSLERGLELSSADDEAIKPMREGVELTLKMFQDTLKR 117 (176)
T ss_pred hHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
No 496
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.73 E-value=1.7e+02 Score=35.77 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 262 VLEIDKLRNENRVVVERHEKEMKEM--KESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS 339 (868)
Q Consensus 262 ~~ei~~Lr~evk~i~er~E~El~El--~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~ 339 (868)
+....+++..++....++.+.+.++ ...+ ..|..+++++... .=+...++...+.++..-..++..........
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~-~~yk~~v~~i~~~---~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDL-EEYKKRLEAIKKK---DIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002902 340 CTEANEIMKSQKVTIDELKTQLDEERNLRRV 370 (868)
Q Consensus 340 ~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~E 370 (868)
..+++..+..+++++.+|+..-..+-+.++.
T Consensus 239 ~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 239 KNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
No 497
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=53.67 E-value=1.9e+02 Score=26.97 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002902 254 LRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLND-- 331 (868)
Q Consensus 254 Lr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~-- 331 (868)
+..++.......+-|+.-++....+ ..++......+.+.+..+..+...|+.-+..+..
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~k-------------------Y~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie 72 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLK-------------------YKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIE 72 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 332 -RLSASMQSCTEANEIMKSQKVTIDEL 357 (868)
Q Consensus 332 -qLe~~e~~~~eL~k~l~kLe~qI~EL 357 (868)
++..++..+..|..-.++|+..++.|
T Consensus 73 ~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 73 EQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
No 498
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=53.57 E-value=78 Score=30.49 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 312 l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
..++-.++..|+..+..+..+|..+...+.++.++...|+.+...|.+.|.+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.42 E-value=1.3e+02 Score=28.60 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 430 KLKLDETRERLVTSDNKVRLLETQVCKE--QNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK 495 (868)
Q Consensus 430 ~~eLE~~ra~~~~LEkkqr~LE~qLeEE--k~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~ 495 (868)
+.+++.+.+.+...+++...+|.+++.. +..+..++..+.++..++..++..|.......+-+.++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK14143 heat shock protein GrpE; Provisional
Probab=53.42 E-value=2.6e+02 Score=30.51 Aligned_cols=98 Identities=11% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~k 321 (868)
..+..|+.++..|+.++..+.....++..+..+.+.|..+++.++......++-..|=..-..|+..-..+..-......
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~ 146 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQA 146 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 322 QKHEMEDLNDRLSASMQS 339 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~ 339 (868)
|..-+.-+..+|...-..
T Consensus 147 l~~Gve~i~k~l~~~L~k 164 (238)
T PRK14143 147 LHRSYQGLYKQLVDVLKR 164 (238)
T ss_pred HHHHHHHHHHHHHHHHHH
Done!