Query 002902
Match_columns 868
No_of_seqs 344 out of 1472
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gxc_A CHK2, CDS1, serine/thre 99.8 2E-19 6.9E-24 176.3 12.7 110 74-203 25-143 (149)
2 4h87_A Kanadaptin; FHA domain 99.8 2.1E-18 7.2E-23 165.6 14.8 120 66-199 8-129 (130)
3 1lgp_A Cell cycle checkpoint p 99.8 8.3E-19 2.8E-23 164.5 11.4 109 77-202 2-112 (116)
4 2jqj_A DNA damage response pro 99.7 1.3E-17 4.3E-22 163.9 13.9 113 74-203 13-126 (151)
5 3elv_A PRE-mRNA leakage protei 99.7 2.7E-17 9.1E-22 168.3 9.7 132 57-200 44-204 (205)
6 1dmz_A Protein (protein kinase 99.7 8.3E-17 2.8E-21 159.4 12.2 116 77-198 3-122 (158)
7 3els_A PRE-mRNA leakage protei 99.7 5E-17 1.7E-21 161.0 10.6 127 62-200 2-157 (158)
8 1qu5_A Protein kinase SPK1; FH 99.7 2.8E-17 9.5E-22 166.3 7.5 114 69-188 19-136 (182)
9 1g6g_A Protein kinase RAD53; b 99.7 1.4E-16 4.6E-21 152.1 11.6 104 77-201 3-120 (127)
10 2kb3_A Oxoglutarate dehydrogen 99.7 4.1E-16 1.4E-20 152.0 14.5 82 94-200 57-139 (143)
11 3va4_A Mediator of DNA damage 99.7 2.6E-16 9E-21 151.4 12.7 94 77-186 22-118 (132)
12 1g3g_A Protien kinase SPK1; FH 99.7 2.2E-16 7.4E-21 157.2 11.3 108 75-201 29-148 (164)
13 2pie_A E3 ubiquitin-protein li 99.7 3E-16 1E-20 151.8 11.4 104 77-201 8-117 (138)
14 3hx1_A SLR1951 protein; P74513 99.6 4E-16 1.4E-20 149.9 10.8 94 76-187 8-107 (131)
15 2jpe_A Nuclear inhibitor of pr 99.6 1.9E-16 6.4E-21 153.6 7.6 82 94-187 45-128 (140)
16 1r21_A Antigen KI-67; beta san 99.6 7E-16 2.4E-20 147.2 10.7 90 77-186 10-100 (128)
17 2kfu_A RV1827 PThr 22; FHA dom 99.6 2.9E-15 1E-19 148.8 15.5 82 94-200 66-148 (162)
18 2xt9_B Putative signal transdu 99.6 2.2E-15 7.5E-20 141.3 12.5 87 78-186 10-97 (115)
19 3gqs_A Adenylate cyclase-like 99.6 2E-15 7E-20 139.4 11.9 90 76-186 2-94 (106)
20 1uht_A Expressed protein; FHA 99.6 1.8E-15 6.2E-20 142.3 11.1 90 78-186 11-103 (118)
21 3po8_A RV0020C protein, putati 99.6 2.8E-15 9.7E-20 137.0 11.4 74 95-186 15-89 (100)
22 2csw_A Ubiquitin ligase protei 99.6 1.2E-15 3.9E-20 149.0 8.6 90 97-200 29-124 (145)
23 1mzk_A Kinase associated prote 99.6 1.4E-14 4.8E-19 140.3 13.4 93 78-186 6-111 (139)
24 3oun_A Putative uncharacterize 99.6 8.3E-15 2.8E-19 144.7 10.4 80 95-199 77-157 (157)
25 3i6u_A CDS1, serine/threonine- 99.6 1.2E-14 4.1E-19 163.1 12.5 111 74-204 5-124 (419)
26 1wln_A Afadin; beta sandwich, 99.5 5.4E-14 1.8E-18 132.9 11.2 101 78-201 10-114 (120)
27 4ejq_A Kinesin-like protein KI 99.5 1.1E-13 3.6E-18 136.6 12.0 93 81-186 40-135 (154)
28 3fm8_A Kinesin-like protein KI 99.5 1.8E-13 6.3E-18 130.2 11.8 88 81-186 28-115 (124)
29 2ff4_A Probable regulatory pro 99.5 1E-13 3.6E-18 155.0 11.7 87 76-186 286-373 (388)
30 3huf_A DNA repair and telomere 99.2 6.1E-12 2.1E-16 135.6 7.2 103 94-202 12-117 (325)
31 1c1g_A Tropomyosin; contractIl 99.2 2.2E-06 7.5E-11 87.9 46.3 21 251-271 8-28 (284)
32 1c1g_A Tropomyosin; contractIl 99.2 2.3E-06 8E-11 87.7 46.5 25 247-271 11-35 (284)
33 3kt9_A Aprataxin; FHA domain, 99.1 2.5E-10 8.4E-15 105.0 10.9 86 81-187 6-92 (102)
34 1i84_S Smooth muscle myosin he 99.1 1.9E-10 6.5E-15 145.2 11.9 48 458-505 1052-1099(1184)
35 2brf_A Bifunctional polynucleo 99.1 3.6E-10 1.2E-14 105.1 9.6 96 80-199 10-107 (110)
36 1yj5_C 5' polynucleotide kinas 99.0 8.5E-10 2.9E-14 106.2 10.8 99 80-202 10-110 (143)
37 3uv0_A Mutator 2, isoform B; F 99.0 3.9E-10 1.3E-14 102.4 6.5 64 99-181 17-81 (102)
38 4egx_A Kinesin-like protein KI 99.0 2.1E-09 7E-14 108.9 12.5 95 80-186 69-165 (184)
39 1i84_S Smooth muscle myosin he 99.0 9.5E-10 3.3E-14 138.9 11.4 71 294-364 897-967 (1184)
40 1ujx_A Polynucleotide kinase 3 99.0 5.3E-10 1.8E-14 105.2 6.1 97 80-200 17-115 (119)
41 4a0e_A YSCD, type III secretio 98.8 2.5E-08 8.4E-13 94.4 11.0 76 93-186 14-90 (123)
42 1wv3_A Similar to DNA segregat 98.3 6.7E-07 2.3E-11 94.0 6.8 69 100-185 89-160 (238)
43 3o0z_A RHO-associated protein 97.7 0.01 3.4E-07 58.8 23.5 137 292-433 9-145 (168)
44 3tnu_A Keratin, type I cytoske 97.6 0.00048 1.7E-08 65.9 12.7 90 421-513 42-131 (131)
45 1gk4_A Vimentin; intermediate 97.6 0.00061 2.1E-08 60.4 12.0 83 432-517 2-84 (84)
46 3na7_A HP0958; flagellar bioge 97.6 0.013 4.5E-07 61.8 24.5 6 583-588 199-204 (256)
47 3tnu_B Keratin, type II cytosk 97.6 0.00067 2.3E-08 64.7 12.8 90 421-513 40-129 (129)
48 1x8y_A Lamin A/C; structural p 97.6 0.00031 1.1E-08 62.5 9.5 83 432-517 4-86 (86)
49 2fxo_A Myosin heavy chain, car 97.5 0.0061 2.1E-07 58.1 18.6 74 292-365 51-124 (129)
50 3o0z_A RHO-associated protein 97.5 0.021 7.3E-07 56.5 22.4 126 436-565 32-158 (168)
51 2v71_A Nuclear distribution pr 97.5 0.015 5.1E-07 58.8 21.4 116 247-363 22-141 (189)
52 3na7_A HP0958; flagellar bioge 97.5 0.026 9E-07 59.5 24.4 11 428-438 176-186 (256)
53 2v71_A Nuclear distribution pr 97.4 0.039 1.3E-06 55.8 23.9 65 294-361 15-79 (189)
54 3vkg_A Dynein heavy chain, cyt 97.2 0.11 3.6E-06 71.5 31.8 84 448-531 2017-2103(3245)
55 3mov_A Lamin-B1; LMNB1, B-type 97.1 0.00075 2.6E-08 61.2 6.7 82 433-517 14-95 (95)
56 3vkg_A Dynein heavy chain, cyt 96.9 0.24 8.4E-06 68.1 31.0 13 193-205 1705-1717(3245)
57 2dfs_A Myosin-5A; myosin-V, in 96.9 0.011 3.7E-07 74.2 17.1 51 313-363 917-971 (1080)
58 2dfs_A Myosin-5A; myosin-V, in 96.9 0.016 5.5E-07 72.7 18.2 95 465-564 983-1077(1080)
59 2ocy_A RAB guanine nucleotide 96.8 0.14 4.7E-06 50.2 19.7 115 241-364 12-127 (154)
60 2fxo_A Myosin heavy chain, car 96.4 0.34 1.2E-05 46.0 19.3 72 292-363 16-87 (129)
61 2eqb_B RAB guanine nucleotide 96.3 0.11 3.8E-06 47.0 14.3 70 294-363 24-94 (97)
62 2xv5_A Lamin-A/C; structural p 96.2 0.014 4.7E-07 50.6 7.8 57 462-518 8-64 (74)
63 3ol1_A Vimentin; structural ge 96.1 0.18 6E-06 47.4 15.4 93 427-519 23-115 (119)
64 2efr_A General control protein 96.1 1.2 4.2E-05 43.6 25.1 37 322-358 26-62 (155)
65 1gk6_A Vimentin; intermediate 96.0 0.012 4E-07 48.8 6.0 55 463-517 4-58 (59)
66 3bas_A Myosin heavy chain, str 95.4 0.18 6.1E-06 45.0 12.0 71 292-362 17-87 (89)
67 3s84_A Apolipoprotein A-IV; fo 95.3 3.8 0.00013 43.6 26.2 7 298-304 90-96 (273)
68 3oja_B Anopheles plasmodium-re 95.2 0.32 1.1E-05 56.4 16.8 49 317-365 509-557 (597)
69 3ol1_A Vimentin; structural ge 95.2 0.68 2.3E-05 43.4 15.8 47 319-365 64-110 (119)
70 2eqb_B RAB guanine nucleotide 95.1 0.4 1.4E-05 43.4 13.1 64 423-486 4-67 (97)
71 2ocy_A RAB guanine nucleotide 95.0 2.9 0.0001 40.8 19.9 45 442-486 55-99 (154)
72 2v66_B Nuclear distribution pr 94.9 1.9 6.5E-05 40.0 17.5 99 374-476 3-101 (111)
73 2efr_A General control protein 94.7 3.5 0.00012 40.4 24.8 95 424-518 28-122 (155)
74 3q8t_A Beclin-1; autophagy, AT 94.1 1.8 6.1E-05 39.1 15.1 91 242-344 4-94 (96)
75 3oja_B Anopheles plasmodium-re 93.9 0.38 1.3E-05 55.8 13.3 7 449-455 548-554 (597)
76 3tnu_B Keratin, type II cytosk 93.8 1 3.4E-05 42.6 13.6 85 244-329 38-122 (129)
77 3s4r_A Vimentin; alpha-helix, 93.5 0.47 1.6E-05 42.6 10.2 70 241-331 22-91 (93)
78 3tnu_A Keratin, type I cytoske 93.5 1 3.5E-05 42.7 13.2 84 246-330 42-125 (131)
79 3u59_A Tropomyosin beta chain; 93.5 3.1 0.00011 37.6 15.8 67 435-501 27-93 (101)
80 2e7s_A RAB guanine nucleotide 93.4 0.28 9.5E-06 46.9 8.8 73 292-364 42-115 (135)
81 2b9c_A Striated-muscle alpha t 93.3 2 6.7E-05 41.8 14.8 75 287-361 50-124 (147)
82 4gkw_A Spindle assembly abnorm 92.6 7.1 0.00024 36.9 20.8 71 428-498 15-85 (167)
83 2b9c_A Striated-muscle alpha t 92.5 1.9 6.5E-05 41.9 13.5 123 426-558 19-144 (147)
84 3ghg_A Fibrinogen alpha chain; 92.2 2.4 8.1E-05 48.5 15.6 55 635-691 366-420 (562)
85 1f5n_A Interferon-induced guan 92.2 21 0.0007 42.0 24.4 66 430-495 465-530 (592)
86 3u59_A Tropomyosin beta chain; 92.1 6 0.00021 35.7 15.7 15 254-268 14-28 (101)
87 2v66_B Nuclear distribution pr 92.1 7.4 0.00025 36.0 16.6 36 328-363 53-88 (111)
88 3swk_A Vimentin; cytoskeleton, 91.6 2 7E-05 37.9 11.5 77 428-504 4-80 (86)
89 1gk4_A Vimentin; intermediate 91.5 2.5 8.5E-05 37.1 11.9 73 263-336 8-80 (84)
90 2v4h_A NF-kappa-B essential mo 91.2 2.8 9.6E-05 38.6 12.2 21 495-515 63-83 (110)
91 2v4h_A NF-kappa-B essential mo 90.7 5.4 0.00019 36.7 13.5 83 424-510 24-106 (110)
92 3s4r_A Vimentin; alpha-helix, 90.6 4.6 0.00016 36.2 13.0 83 250-360 10-92 (93)
93 3s84_A Apolipoprotein A-IV; fo 90.3 21 0.00072 37.9 32.8 13 321-333 85-97 (273)
94 4gkw_A Spindle assembly abnorm 90.2 13 0.00043 35.2 23.0 17 517-533 145-161 (167)
95 3hnw_A Uncharacterized protein 89.8 3.3 0.00011 39.8 12.1 60 303-362 75-134 (138)
96 1x8y_A Lamin A/C; structural p 89.8 2 6.7E-05 38.0 9.7 69 268-337 15-83 (86)
97 1x79_B RAB GTPase binding effe 89.7 6.2 0.00021 36.6 13.3 30 242-271 6-35 (112)
98 1ic2_A Tropomyosin alpha chain 89.3 2.6 8.8E-05 36.7 10.0 58 293-350 10-67 (81)
99 3mq9_A Bone marrow stromal ant 89.3 7.3 0.00025 43.8 16.7 7 179-185 253-259 (471)
100 3mq7_A Bone marrow stromal ant 89.1 13 0.00044 34.5 14.7 36 317-352 71-106 (121)
101 2i1j_A Moesin; FERM, coiled-co 88.5 1.1 3.7E-05 52.7 9.3 19 543-561 511-529 (575)
102 1x79_B RAB GTPase binding effe 88.1 11 0.00039 34.8 13.8 64 424-490 6-69 (112)
103 3bas_A Myosin heavy chain, str 87.9 6.9 0.00024 34.6 12.0 51 283-334 37-87 (89)
104 3jsv_C NF-kappa-B essential mo 87.2 5.7 0.00019 35.7 10.8 78 456-537 6-86 (94)
105 2b5u_A Colicin E3; high resolu 87.1 47 0.0016 37.9 23.2 27 426-452 351-377 (551)
106 2e7s_A RAB guanine nucleotide 87.1 1.9 6.4E-05 41.3 8.2 61 426-486 27-87 (135)
107 1ic2_A Tropomyosin alpha chain 85.4 12 0.00042 32.3 12.1 31 318-348 21-51 (81)
108 3iv1_A Tumor susceptibility ge 85.2 13 0.00045 32.3 11.8 65 283-347 5-69 (78)
109 2i1j_A Moesin; FERM, coiled-co 85.2 1 3.5E-05 52.9 6.6 9 179-187 213-221 (575)
110 3swk_A Vimentin; cytoskeleton, 84.9 10 0.00035 33.4 11.4 38 318-355 43-80 (86)
111 3oja_A Leucine-rich immune mol 84.9 17 0.00059 40.9 16.5 12 21-32 33-44 (487)
112 3mq9_A Bone marrow stromal ant 84.7 19 0.00065 40.3 16.7 24 465-488 442-465 (471)
113 1wt6_A Myotonin-protein kinase 84.7 8.8 0.0003 33.5 10.4 60 299-358 13-72 (81)
114 3hnw_A Uncharacterized protein 84.7 22 0.00074 34.0 14.5 58 298-355 77-134 (138)
115 2oto_A M protein; helical coil 84.4 31 0.001 33.3 20.2 13 548-560 143-155 (155)
116 3oja_A Leucine-rich immune mol 83.6 16 0.00056 41.1 15.5 46 318-363 422-467 (487)
117 1go4_E MAD1 (mitotic arrest de 82.0 4.9 0.00017 36.5 8.2 58 474-531 13-94 (100)
118 3qh9_A Liprin-beta-2; coiled-c 81.9 9.7 0.00033 33.2 9.6 58 426-483 21-78 (81)
119 3a7p_A Autophagy protein 16; c 80.8 29 0.00099 33.7 13.5 49 458-506 67-115 (152)
120 3mq7_A Bone marrow stromal ant 80.6 36 0.0012 31.6 13.4 13 448-460 56-68 (121)
121 1m1j_B Fibrinogen beta chain; 80.2 68 0.0023 36.6 18.6 6 640-645 275-280 (464)
122 1deq_A Fibrinogen (alpha chain 80.0 63 0.0022 35.7 17.5 8 381-388 67-74 (390)
123 3i00_A HIP-I, huntingtin-inter 79.6 14 0.00049 34.6 10.8 38 292-329 43-80 (120)
124 2k48_A Nucleoprotein; viral pr 78.2 9.2 0.00031 34.9 8.6 74 237-317 30-103 (107)
125 3jsv_C NF-kappa-B essential mo 78.1 20 0.00068 32.2 10.6 82 425-510 3-84 (94)
126 3mov_A Lamin-B1; LMNB1, B-type 77.5 5 0.00017 36.1 6.7 57 276-333 32-88 (95)
127 1l8d_A DNA double-strand break 76.7 42 0.0015 30.2 13.5 13 440-452 26-38 (112)
128 3iox_A AGI/II, PA; alpha helix 73.0 89 0.003 35.7 16.8 35 254-288 7-41 (497)
129 2qyw_A Vesicle transport throu 70.5 48 0.0016 29.9 11.6 51 304-360 50-100 (102)
130 3efg_A Protein SLYX homolog; x 69.9 13 0.00043 32.3 7.2 47 294-340 12-58 (78)
131 1d7m_A Cortexillin I; coiled-c 69.9 59 0.002 28.8 15.5 62 297-365 5-66 (101)
132 1s1c_X RHO-associated, coiled- 69.2 35 0.0012 29.1 9.5 65 477-544 3-68 (71)
133 3a7p_A Autophagy protein 16; c 68.6 61 0.0021 31.5 12.3 13 467-479 104-116 (152)
134 2zqm_A Prefoldin beta subunit 67.9 64 0.0022 29.0 12.1 21 377-397 87-107 (117)
135 3zx6_A HAMP, methyl-accepting 67.7 1.4E+02 0.0047 32.2 39.8 23 242-264 34-56 (341)
136 1m1j_A Fibrinogen alpha subuni 67.2 1.7E+02 0.0059 33.1 17.2 14 548-561 233-246 (491)
137 3cve_A Homer protein homolog 1 67.2 59 0.002 27.8 10.7 17 499-515 40-56 (72)
138 3efg_A Protein SLYX homolog; x 67.1 15 0.00052 31.8 7.1 40 322-361 12-51 (78)
139 2oto_A M protein; helical coil 65.7 97 0.0033 29.7 19.7 15 247-261 27-41 (155)
140 3iox_A AGI/II, PA; alpha helix 65.7 1.2E+02 0.0042 34.6 15.9 17 506-522 60-76 (497)
141 4h22_A Leucine-rich repeat fli 64.9 54 0.0019 29.9 10.4 49 439-487 17-65 (103)
142 1sjj_A Actinin; 3-helix bundle 64.2 2.4E+02 0.0084 33.8 29.2 19 543-561 645-663 (863)
143 3i00_A HIP-I, huntingtin-inter 63.8 52 0.0018 30.7 10.6 14 522-535 43-56 (120)
144 1fxk_A Prefoldin; archaeal pro 63.4 80 0.0027 27.9 12.1 16 380-395 85-100 (107)
145 3cvf_A Homer-3, homer protein 63.2 39 0.0013 29.4 8.9 21 497-517 44-64 (79)
146 2xdj_A Uncharacterized protein 63.1 70 0.0024 28.0 10.6 52 445-496 6-57 (83)
147 3ni0_A Bone marrow stromal ant 62.7 86 0.003 28.1 11.7 51 436-486 37-87 (99)
148 2a01_A Apolipoprotein A-I; fou 62.1 1.4E+02 0.0049 30.6 14.9 18 244-261 50-67 (243)
149 2q6q_A Spindle POLE BODY compo 62.1 27 0.00094 29.4 7.3 62 249-315 3-64 (74)
150 2no2_A HIP-I, huntingtin-inter 61.0 99 0.0034 28.2 14.9 31 428-458 12-42 (107)
151 3etw_A Adhesin A; antiparallel 61.0 1.1E+02 0.0037 28.6 14.6 37 506-542 69-105 (119)
152 1f5n_A Interferon-induced guan 60.5 2.6E+02 0.0087 32.8 25.2 51 433-486 489-539 (592)
153 2ic6_A Nucleocapsid protein; h 59.7 49 0.0017 28.7 8.7 70 241-317 4-73 (78)
154 1uix_A RHO-associated kinase; 59.7 81 0.0028 26.9 9.9 62 480-544 4-68 (71)
155 4h22_A Leucine-rich repeat fli 57.9 60 0.002 29.6 9.4 11 298-308 32-42 (103)
156 1m1j_C Fibrinogen gamma chain; 57.8 1.8E+02 0.0061 32.6 15.4 7 639-645 211-217 (409)
157 2a01_A Apolipoprotein A-I; fou 57.6 97 0.0033 32.0 12.6 9 426-434 222-230 (243)
158 2ke4_A CDC42-interacting prote 57.4 55 0.0019 29.5 9.2 66 292-357 18-88 (98)
159 2ic9_A Nucleocapsid protein; h 55.5 46 0.0016 29.9 8.2 69 242-317 5-73 (96)
160 4fm3_A Uncharacterized hypothe 55.3 65 0.0022 29.1 9.2 65 297-361 30-94 (98)
161 3iyk_A VP5; icosahedral virus; 55.1 2.9E+02 0.0098 31.7 19.8 20 270-289 114-133 (526)
162 1go4_E MAD1 (mitotic arrest de 54.2 1E+02 0.0034 28.0 10.3 31 426-456 14-44 (100)
163 2jee_A YIIU; FTSZ, septum, coi 54.0 1.1E+02 0.0038 26.7 12.4 10 321-330 59-68 (81)
164 2xv5_A Lamin-A/C; structural p 53.8 48 0.0016 28.4 7.8 53 283-336 7-59 (74)
165 3qh9_A Liprin-beta-2; coiled-c 53.1 1.2E+02 0.0039 26.5 10.7 41 322-362 24-64 (81)
166 1wt6_A Myotonin-protein kinase 53.1 1.2E+02 0.004 26.5 10.4 22 464-485 43-64 (81)
167 4fm3_A Uncharacterized hypothe 51.4 62 0.0021 29.2 8.4 40 445-484 57-96 (98)
168 2yy0_A C-MYC-binding protein; 51.2 27 0.00093 28.0 5.5 38 230-271 11-48 (53)
169 4etp_A Kinesin-like protein KA 50.5 36 0.0012 38.0 8.4 8 570-577 197-204 (403)
170 4emc_A Monopolin complex subun 50.0 46 0.0016 33.4 8.1 53 309-361 12-64 (190)
171 2lw1_A ABC transporter ATP-bin 48.8 76 0.0026 27.7 8.6 27 430-456 21-47 (89)
172 3m91_A Proteasome-associated A 48.8 58 0.002 26.0 6.9 37 326-362 11-47 (51)
173 2lw1_A ABC transporter ATP-bin 48.6 65 0.0022 28.1 8.1 26 310-335 22-47 (89)
174 1sjj_A Actinin; 3-helix bundle 46.8 4.5E+02 0.015 31.5 26.9 12 550-561 645-656 (863)
175 1deb_A APC protein, adenomatou 45.6 79 0.0027 25.2 7.0 44 293-336 7-50 (54)
176 4fi5_A Nucleoprotein; structur 44.6 1.1E+02 0.0038 28.2 9.0 68 243-317 23-90 (113)
177 4ani_A Protein GRPE; chaperone 44.3 2.6E+02 0.0088 28.6 12.9 68 242-312 59-126 (213)
178 1ik9_A DNA repair protein XRCC 44.1 2.4E+02 0.0081 28.7 12.6 40 478-517 151-191 (213)
179 2ke4_A CDC42-interacting prote 43.9 1.8E+02 0.0061 26.1 10.3 37 465-501 14-50 (98)
180 2w83_C C-JUN-amino-terminal ki 43.8 1.6E+02 0.0054 25.4 10.2 45 460-504 31-75 (77)
181 1wle_A Seryl-tRNA synthetase; 43.2 1.3E+02 0.0043 34.6 11.6 28 441-468 73-100 (501)
182 1wle_A Seryl-tRNA synthetase; 43.1 1.6E+02 0.0056 33.7 12.5 23 292-314 80-102 (501)
183 2q6q_A Spindle POLE BODY compo 42.8 1.3E+02 0.0045 25.4 8.4 56 510-568 8-63 (74)
184 3iv1_A Tumor susceptibility ge 42.5 1.7E+02 0.0058 25.4 11.7 55 424-478 18-72 (78)
185 1ik9_A DNA repair protein XRCC 42.1 2.9E+02 0.01 28.0 13.2 62 244-309 134-195 (213)
186 1bg1_A Protein (transcription 41.6 4.9E+02 0.017 30.5 16.6 22 521-542 141-162 (596)
187 3ghg_C Fibrinogen gamma chain; 41.3 2E+02 0.0068 32.3 12.4 7 639-645 211-217 (411)
188 1t2k_D Cyclic-AMP-dependent tr 40.9 1.4E+02 0.0049 24.1 9.2 30 328-357 26-55 (61)
189 1ci6_A Transcription factor AT 40.8 1.1E+02 0.0037 25.2 7.8 30 328-357 27-56 (63)
190 3nwc_A SMC protein; structural 40.0 1.8 6.2E-05 43.5 -3.8 74 156-236 86-179 (189)
191 3qne_A Seryl-tRNA synthetase, 40.0 1.1E+02 0.0039 34.9 10.5 28 441-468 36-63 (485)
192 3ghg_B Fibrinogen beta chain; 39.0 4.8E+02 0.016 29.6 15.0 26 506-531 164-189 (461)
193 3m9b_A Proteasome-associated A 39.0 33 0.0011 36.0 5.4 11 688-698 215-225 (251)
194 3lay_A Zinc resistance-associa 38.5 94 0.0032 30.8 8.3 10 499-508 118-127 (175)
195 1gd2_E Transcription factor PA 38.3 50 0.0017 28.0 5.4 10 470-479 33-42 (70)
196 2dq0_A Seryl-tRNA synthetase; 37.9 1.1E+02 0.0039 34.5 10.0 23 443-465 36-58 (455)
197 1vcs_A Vesicle transport throu 37.9 87 0.003 28.1 7.4 51 305-361 40-90 (102)
198 3qne_A Seryl-tRNA synthetase, 37.3 76 0.0026 36.4 8.5 22 292-313 43-64 (485)
199 2no2_A HIP-I, huntingtin-inter 37.0 2.4E+02 0.0083 25.6 16.1 16 249-264 8-23 (107)
200 1gd2_E Transcription factor PA 36.9 1.5E+02 0.0051 25.1 8.1 36 447-482 31-66 (70)
201 4dk0_A Putative MACA; alpha-ha 36.1 1.4E+02 0.0048 31.8 10.1 14 385-398 140-153 (369)
202 3c9i_A Tail needle protein GP2 36.0 3.6E+02 0.012 27.4 13.6 24 294-317 82-105 (242)
203 4fi5_A Nucleoprotein; structur 36.0 2.4E+02 0.008 26.0 9.7 11 444-454 75-85 (113)
204 3cl3_D NF-kappa-B essential mo 35.6 47 0.0016 31.3 5.2 17 467-483 31-47 (130)
205 3ibp_A Chromosome partition pr 34.8 2.8E+02 0.0097 29.7 11.7 27 426-452 226-252 (302)
206 1zww_A SH3-containing GRB2-lik 34.3 3.9E+02 0.013 27.3 17.3 63 499-561 179-242 (256)
207 2v0o_A FCHO2, FCH domain only 33.2 4E+02 0.014 26.9 21.0 16 502-517 171-186 (276)
208 3m91_A Proteasome-associated A 33.0 1.6E+02 0.0054 23.5 7.2 20 464-483 28-47 (51)
209 1bf5_A Signal transducer and a 32.9 6.5E+02 0.022 29.4 19.3 25 518-542 125-149 (575)
210 3vp9_A General transcriptional 31.9 1.5E+02 0.0052 26.4 7.7 35 488-522 51-85 (92)
211 4emc_A Monopolin complex subun 31.8 2.2E+02 0.0074 28.6 9.6 19 573-591 85-103 (190)
212 2dq0_A Seryl-tRNA synthetase; 31.6 1.7E+02 0.006 33.0 10.2 18 294-311 43-60 (455)
213 2wt7_B Transcription factor MA 31.6 2.8E+02 0.0095 24.6 10.7 17 427-443 24-40 (90)
214 2xnx_M M protein, M1-BC1; cell 31.2 2.3E+02 0.0079 27.2 9.3 7 555-561 120-126 (146)
215 2oqq_A Transcription factor HY 30.4 1.6E+02 0.0054 22.6 6.3 22 315-336 8-29 (42)
216 3plt_A Sphingolipid long chain 30.0 4.8E+02 0.017 27.0 19.0 55 242-301 69-123 (234)
217 1ses_A Seryl-tRNA synthetase; 29.8 1.3E+02 0.0045 33.6 8.7 27 441-467 31-57 (421)
218 1t3j_A Mitofusin 1; coiled coi 29.8 1.2E+02 0.004 27.3 6.6 35 528-562 56-90 (96)
219 3lss_A Seryl-tRNA synthetase; 29.8 2.4E+02 0.0081 32.3 10.9 7 817-823 457-463 (484)
220 3s9g_A Protein hexim1; cyclin 29.2 3.2E+02 0.011 24.7 9.7 22 465-486 64-85 (104)
221 2pms_C Pneumococcal surface pr 28.2 2.6E+02 0.0089 26.3 8.9 22 540-561 100-121 (125)
222 3uux_B Mitochondrial division 28.0 4.8E+02 0.016 27.1 11.7 75 420-494 152-226 (242)
223 3u06_A Protein claret segregat 27.8 1.2E+02 0.0043 33.8 8.1 7 571-577 198-204 (412)
224 4dk0_A Putative MACA; alpha-ha 27.8 1.8E+02 0.0062 30.9 9.2 6 628-633 212-217 (369)
225 3tul_A Cell invasion protein S 27.7 4.2E+02 0.014 25.5 12.1 109 383-492 22-133 (158)
226 2w6b_A RHO guanine nucleotide 27.7 1.7E+02 0.0057 23.7 6.4 33 465-497 16-48 (56)
227 2z0v_A SH3-containing GRB2-lik 27.4 5E+02 0.017 26.3 16.4 62 500-561 164-226 (240)
228 2wt7_A Proto-oncogene protein 27.3 2.5E+02 0.0086 22.8 10.2 30 328-357 27-56 (63)
229 1jnm_A Proto-oncogene C-JUN; B 27.2 1.7E+02 0.0057 23.8 6.8 15 337-351 35-49 (62)
230 3ghg_B Fibrinogen beta chain; 27.1 6E+02 0.02 28.8 13.3 22 377-398 166-187 (461)
231 1jnm_A Proto-oncogene C-JUN; B 27.1 2.1E+02 0.0071 23.2 7.3 32 298-329 24-55 (62)
232 1gk6_A Vimentin; intermediate 27.0 2E+02 0.0069 23.3 7.1 40 294-333 12-51 (59)
233 2yko_A LINE-1 ORF1P; RNA-bindi 26.3 1.1E+02 0.0038 31.7 6.7 43 316-358 5-47 (233)
234 4dci_A Uncharacterized protein 26.2 3.9E+02 0.013 25.8 10.1 61 242-303 36-105 (150)
235 3thf_A Protein shroom; coiled- 26.2 5.1E+02 0.017 26.0 22.9 23 535-557 161-183 (190)
236 3lay_A Zinc resistance-associa 26.1 4.8E+02 0.016 25.7 11.1 19 467-485 114-132 (175)
237 1ci6_A Transcription factor AT 25.8 2.7E+02 0.0093 22.7 8.6 34 298-331 25-58 (63)
238 1lwu_C Fibrinogen gamma chain; 25.3 1.4E+02 0.0048 32.4 7.6 6 640-645 134-139 (323)
239 3hhm_B NISH2 P85alpha; PI3KCA, 25.2 7E+02 0.024 27.3 16.1 7 126-132 58-64 (373)
240 3onj_A T-snare VTI1; helix, HA 25.2 3.5E+02 0.012 23.8 12.8 25 305-329 36-60 (97)
241 2p22_A Suppressor protein STP2 25.1 4.1E+02 0.014 26.2 10.3 33 313-345 52-84 (174)
242 1uix_A RHO-associated kinase; 25.0 3.2E+02 0.011 23.2 8.6 12 325-336 12-23 (71)
243 2xzr_A Immunoglobulin-binding 24.7 3.8E+02 0.013 24.0 17.7 37 307-343 52-88 (114)
244 3k29_A Putative uncharacterize 24.7 5.1E+02 0.017 25.5 21.5 21 497-517 88-108 (169)
245 1ses_A Seryl-tRNA synthetase; 24.7 2E+02 0.0069 32.1 9.1 17 294-310 40-56 (421)
246 3a7o_A Autophagy protein 16; c 24.7 3.2E+02 0.011 23.2 7.9 46 457-502 16-61 (75)
247 2odv_A Plectin 1, HD1; plakin 24.5 5.8E+02 0.02 26.1 21.9 26 462-487 168-193 (235)
248 1jad_A PLC-beta, phospholipase 24.5 6.2E+02 0.021 26.4 30.5 52 230-292 10-61 (251)
249 1fxk_C Protein (prefoldin); ar 24.3 4.1E+02 0.014 24.3 12.3 94 244-341 3-133 (133)
250 3cl3_D NF-kappa-B essential mo 23.8 2.5E+02 0.0085 26.5 7.8 70 294-366 7-76 (130)
251 3fpp_A Macrolide-specific effl 23.7 1.4E+02 0.0048 31.5 7.3 7 628-634 211-217 (341)
252 3ajw_A Flagellar FLIJ protein; 23.3 4.4E+02 0.015 24.2 18.8 55 407-461 71-125 (150)
253 2zuo_A MVP, major vault protei 23.1 1.1E+03 0.037 28.8 23.9 7 572-578 817-823 (861)
254 3c9i_A Tail needle protein GP2 22.9 6.1E+02 0.021 25.7 13.4 15 464-478 89-103 (242)
255 3lss_A Seryl-tRNA synthetase; 22.8 2.8E+02 0.0096 31.7 9.9 23 292-314 47-69 (484)
256 1gmj_A ATPase inhibitor; coile 22.8 2.8E+02 0.0096 24.3 7.5 44 309-352 36-79 (84)
257 3k29_A Putative uncharacterize 22.6 5.6E+02 0.019 25.2 20.0 47 310-356 78-124 (169)
258 2b5u_A Colicin E3; high resolu 22.4 9.2E+02 0.032 27.6 20.9 40 377-418 294-333 (551)
259 3iyk_A VP5; icosahedral virus; 22.3 9.2E+02 0.031 27.6 18.0 20 747-767 436-455 (526)
260 2k9x_A Tburm1, uncharacterized 21.6 39 0.0013 30.9 2.0 27 160-186 70-97 (110)
261 3q0x_A Centriole protein; cent 21.4 2.7E+02 0.0094 28.7 8.5 37 312-348 180-216 (228)
262 2aze_A Transcription factor DP 21.4 2E+02 0.0069 28.0 7.0 45 513-557 6-50 (155)
263 1t3j_A Mitofusin 1; coiled coi 21.2 4.5E+02 0.015 23.6 9.4 11 319-329 80-90 (96)
264 1t2k_D Cyclic-AMP-dependent tr 21.2 3.2E+02 0.011 21.9 9.9 34 298-331 24-57 (61)
265 4ani_A Protein GRPE; chaperone 21.0 6.7E+02 0.023 25.5 12.4 36 330-365 65-100 (213)
266 1uii_A Geminin; human, DNA rep 20.7 4E+02 0.014 23.3 8.0 38 444-485 35-72 (83)
267 4e61_A Protein BIM1; EB1-like 20.4 4.9E+02 0.017 23.7 9.8 34 316-349 17-50 (106)
268 2wvr_A Geminin; DNA replicatio 20.3 4.1E+02 0.014 26.9 9.1 39 444-486 104-142 (209)
269 2l52_A Methanosarcina acetivor 20.3 56 0.0019 28.9 2.8 30 156-185 63-93 (99)
No 1
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=2e-19 Score=176.35 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=88.8
Q ss_pred CCCCceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCC---------CcccceeEEeeeccCCCCCCCC
Q 002902 74 YDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNA---------VSANHCKIYRKKFASGDLDHSP 144 (868)
Q Consensus 74 ~~~~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~---------ISr~Hc~I~~~~~~~~d~~~~~ 144 (868)
+.+.+||+|+++.... ..|.|....++|||++.| ||+|+++. |||.||+|++....
T Consensus 25 ~~~~~w~~L~~~~~~~------~~i~L~~~~~~IGR~~~~-di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~-------- 89 (149)
T 1gxc_A 25 PTPAPWARLWALQDGF------ANLECVNDNYWFGRDKSC-EYCFDEPLLKRTDKYRTYSKKHFRIFREVGP-------- 89 (149)
T ss_dssp ----CCEEEEECSTTC------CCEEECSSEEEEESSTTC-SEECCCGGGGGSSGGGGSCTTCEEEEEEECT--------
T ss_pred CCCCeeEEEEEcCCCC------ceEEECCCCEEecCCCCC-CEEECCccccccccCCcCchhheEEEEECCC--------
Confidence 4557899999887532 358899999999999987 99999985 99999999987631
Q ss_pred CCCceEEEEeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeeccC
Q 002902 145 SGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSR 203 (868)
Q Consensus 145 ~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~~~ 203 (868)
.+...|||.|+|+|||||||.+|.+ +.++.|++||+|.||.+ ..+.|+|.+...
T Consensus 90 ~~~~~~~i~D~StNGT~VNg~~i~~-~~~~~L~~GD~I~lG~~----~~~~f~f~d~~~ 143 (149)
T 1gxc_A 90 KNSYIAYIEDHSGNGTFVNTELVGK-GKRRPLNNNSEIALSLS----RNKVFVFFDLTV 143 (149)
T ss_dssp TSSEEEEEEECCSSCEEETTEECCT-TCEEECCTTEEEEESST----TCEEEEEEETTC
T ss_pred CceeEEEEEECCCCCeEECCEECCC-CCeEECCCCCEEEECCC----CCeEEEEEECCc
Confidence 1124799999999999999999998 66789999999999964 257889988754
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=165.58 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=83.8
Q ss_pred ccCCCCCCCCCCceEEEEEecccccccCcceEEEecC-CceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCC
Q 002902 66 YAAQPLQNYDPKVWGVLTAISNNARKRHQGINILLTA-DEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSP 144 (868)
Q Consensus 66 ~a~~p~~~~~~~~WG~L~~~~~~~~~r~~g~~i~L~~-~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~ 144 (868)
+..||-+.+++..|...+..+... ...|.|.. ..|+|||.+.| ||+|+++.|||+||.|++..... .... .
T Consensus 8 y~~P~wa~~p~~~~~L~v~k~g~~-----~~~~~L~~~~~~~IGR~~~~-di~l~~~~VSr~HA~I~~r~~~~-~~~~-~ 79 (130)
T 4h87_A 8 YQEPPWGGPATAPYSLETLKGGTI-----LGTRSLKGTSYCLFGRLSGC-DVCLEHPSVSRYHAVLQHRASGP-DGEC-D 79 (130)
T ss_dssp CCCCTTBCCCCSCCEEEEEETTEE-----EEEEECTTCSEEEEESSTTS-SEECCCTTSCSSCEEEEEBCCCC-CC----
T ss_pred CCCCCCccCCCCCEEEEEEECCee-----eeeEEeCCCceEEEcCCcCC-CEEeCCCCcchhcEEEEEecccC-ccce-e
Confidence 333443444556685545444322 23577765 45899999987 99999999999999997754211 0000 0
Q ss_pred CCCceEEEEeC-CcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEe
Q 002902 145 SGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFR 199 (868)
Q Consensus 145 ~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~ 199 (868)
.....|||.|+ |+|||||||.+|.+ +.++.|++||+|.||.. ...|||+
T Consensus 80 ~~~~~~~l~Dl~StNGT~vNg~ri~~-~~~~~L~~GD~I~~G~s-----tr~yvl~ 129 (130)
T 4h87_A 80 SNGPGFYLYDLGSTHGTFLNKTRIPP-RTYCRVHVGHVVRFGGS-----TRLFILQ 129 (130)
T ss_dssp ---CCEEEEECSCSSCEEETTEECCT-TCCEECCTTCEEEETTC-----SEEEEEE
T ss_pred ccCCcceEeeCCCCCceEECCEECCC-CceeECCCCCEEEECCc-----eEEEEEc
Confidence 11236999998 99999999999998 67789999999999964 3567775
No 3
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.77 E-value=8.3e-19 Score=164.55 Aligned_cols=109 Identities=28% Similarity=0.453 Sum_probs=88.9
Q ss_pred CceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCC-CCcccceeEEeeeccCCCCCCCCCCCceEEEEeC
Q 002902 77 KVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSN-AVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (868)
Q Consensus 77 ~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~-~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~ 155 (868)
.+||+|+++.... .+..|.|....++|||.+.| ||+|++. .||+.||.|++.... ..|||.|.
T Consensus 2 ~~wg~L~~~~~~~----~~~~~~l~~~~~~iGR~~~~-di~l~~~~~vSr~Ha~i~~~~~~-----------~~~~l~D~ 65 (116)
T 1lgp_A 2 QPWGRLLRLGAEE----GEPHVLLRKREWTIGRRRGC-DLSFPSNKLVSGDHCRIVVDEKS-----------GQVTLEDT 65 (116)
T ss_dssp CCCEEECCTTCCS----SSCCEEECSSEEEEESSTTS-SEECTTCTTSCTTCEEEEECTTT-----------CCEEEEEC
T ss_pred CCEEEEEEeCCCC----CccEEEECCCCEEECCCCCC-CEEeCCCCCCChhHeEEEEECCC-----------CeEEEEEC
Confidence 3699999986422 24568899999999999987 9999865 999999999986311 25999999
Q ss_pred CcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCc-eEEEEEeecc
Q 002902 156 STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDL-AFAFVFRDVS 202 (868)
Q Consensus 156 StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~-~f~fvf~d~~ 202 (868)
|+|||||||.+|.+ +.++.|.+||+|.||.++.... .+.|+|.+..
T Consensus 66 S~NGt~vng~~l~~-~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~ 112 (116)
T 1lgp_A 66 STSGTVINKLKVVK-KQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLS 112 (116)
T ss_dssp SSSCCCCCCCCCCC-SSCCCCCTTCEEEEECCSSCGGGCEEEECCCSC
T ss_pred CcCCcEECCEEcCC-CCcEECCCCCEEEEeccCCCCCceEEEEEEccc
Confidence 99999999999998 6678999999999997543222 6889998764
No 4
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.74 E-value=1.3e-17 Score=163.88 Aligned_cols=113 Identities=20% Similarity=0.298 Sum_probs=86.5
Q ss_pred CCCCceEEEEEecccccccCcceEEEec-CCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEE
Q 002902 74 YDPKVWGVLTAISNNARKRHQGINILLT-ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCL 152 (868)
Q Consensus 74 ~~~~~WG~L~~~~~~~~~r~~g~~i~L~-~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L 152 (868)
....+|++|+.+... .+..|.|. ...++|||.+.| ||+|+++.||+.||.|++......+ .....|||
T Consensus 13 ~~~~~~~~L~~~~~~-----~g~~~~l~~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~~~~~~-----~~~~~~~l 81 (151)
T 2jqj_A 13 SEYTCLGHLVNLIPG-----KEQKVEITNRNVTTIGRSRSC-DVILSEPDISTFHAEFHLLQMDVDN-----FQRNLINV 81 (151)
T ss_dssp SSCCEEEEEEEEETT-----EEEEEEEECCSCEEEESSTTS-SEECCCTTCCTTSEEEEEEEEEETT-----EEEEEEEE
T ss_pred CCCCceEEEEEecCC-----CceEEEEcCCCeEEeCCCCCC-CEEECCCCCccccCEEEEecccCCc-----CcCCEEEE
Confidence 334579999988742 35578887 489999999987 9999999999999999984210000 00136999
Q ss_pred EeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeeccC
Q 002902 153 KDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSR 203 (868)
Q Consensus 153 ~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~~~ 203 (868)
.|+|+|||||||.+|.+ + ++.|.+||+|.||.. ..|.|.|.....
T Consensus 82 ~DlS~NGT~VNg~~i~~-~-~~~L~~GD~I~lG~~----~~~~f~~~~~~~ 126 (151)
T 2jqj_A 82 IDKSRNGTFINGNRLVK-K-DYILKNGDRIVFGKS----CSFLFKYASSSS 126 (151)
T ss_dssp EECCSSCEEETTEECCS-S-CEEECSSEEEEETTT----EEEEEEECSSCC
T ss_pred EECCCCCeEECCEEcCC-C-ceECCCCCEEEECCC----cEEEEEEcCCCc
Confidence 99999999999999998 5 789999999999952 256666665543
No 5
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.69 E-value=2.7e-17 Score=168.34 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=90.4
Q ss_pred cchhhhhccccCCCCCCCCCCce-------------EEEEEecccccccCcceEEEec-CCceEeccCCC----------
Q 002902 57 HFVFWVAGTYAAQPLQNYDPKVW-------------GVLTAISNNARKRHQGINILLT-ADEHCIGRLVD---------- 112 (868)
Q Consensus 57 ~~~~~~a~~~a~~p~~~~~~~~W-------------G~L~~~~~~~~~r~~g~~i~L~-~~~~~IGR~~~---------- 112 (868)
..+.+|+.++.+||.+..++..| ..++...+... ...-..|.|. ...|+|||.+.
T Consensus 44 n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~-~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~ 122 (205)
T 3elv_A 44 NNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKD-KGPWKRYDLNGRSCYLVGRELGHSLDTDLDDR 122 (205)
T ss_dssp --------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCT-TCCSEEEECSSCSEEEEEECCCC---------
T ss_pred cccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcc-cccceEEEecCCCceeeccccccccccccccc
Confidence 44567889999999887665545 44555442100 0011257774 57899999963
Q ss_pred ----CCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCccccCCCCEEEeccC
Q 002902 113 ----DAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (868)
Q Consensus 113 ----~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~ 187 (868)
.|||+|+++.||+.||.|.+.... +...|||.|+ |+|||||||.+|.+ +.++.|.+||+|.||.+
T Consensus 123 ~e~~~cDIvL~dp~VSR~HA~I~~~~~~---------~~~~~~l~DLgStNGTfVNG~rI~~-~~~~~L~~GD~I~fG~s 192 (205)
T 3elv_A 123 TEIVVADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIPG-ARYIELRSGDVLTLSEF 192 (205)
T ss_dssp CCCCCCSEEECCTTSCTTCEEEEEEEET---------TEEEEEEEECSCSSCCEETTEECCB-TSCEECCTTCEEESSSS
T ss_pred ccCccceEEeCCCCCCcccEEEEEecCC---------CceeEEEEeCCCCCCCeECCEECCC-CceeECCCCCEEEECCC
Confidence 359999999999999999876531 1135999999 99999999999998 66789999999999976
Q ss_pred CCCCceEEEEEee
Q 002902 188 PQHDLAFAFVFRD 200 (868)
Q Consensus 188 ~~~~~~f~fvf~d 200 (868)
+.. ..+.|+|..
T Consensus 193 ~r~-~~~el~f~~ 204 (205)
T 3elv_A 193 EED-NDYELIFMN 204 (205)
T ss_dssp GGG-CSEEEEEEE
T ss_pred CCC-CCeEEEEEe
Confidence 432 357777753
No 6
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.69 E-value=8.3e-17 Score=159.36 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=86.4
Q ss_pred CceEEEEEecccccccCcceEEEecCCc--eEeccCCCCCceeeCCCCCcccceeEEeeeccCCC--CCCCCCCCceEEE
Q 002902 77 KVWGVLTAISNNARKRHQGINILLTADE--HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGD--LDHSPSGCSSVCL 152 (868)
Q Consensus 77 ~~WG~L~~~~~~~~~r~~g~~i~L~~~~--~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d--~~~~~~~~~~~~L 152 (868)
+.|-.|.|+..... +..|.|..+. ++|||.+.| ||+|+++.||+.||.|++....... ...+..+...|||
T Consensus 3 g~~l~L~p~~~~~~----~~~i~L~~~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l 77 (158)
T 1dmz_A 3 GRFLTLKPLPDSII----QESLEIQQGVNPFFIGRSEDC-NCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWY 77 (158)
T ss_dssp SCCEEEEECTTSSC----CCCEEETTSCSCEEEESSTTS-SEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEE
T ss_pred ceEEEEEeCCCCcc----ceEEEEcCCCceEEECCCCCC-CEEeCCCCcChHHeEEEEecCccccccccccccccccEEE
Confidence 56888888875432 3457887665 999999987 9999999999999999987521100 0111222357999
Q ss_pred EeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEE
Q 002902 153 KDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVF 198 (868)
Q Consensus 153 ~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf 198 (868)
.|+|+|||||||.+|.+ +.++.|.+||+|.|+.++.....+.|.+
T Consensus 78 ~DlStNGT~VNg~ri~~-~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 78 CHTGTNVSYLNNNRMIQ-GTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp EECSTTCCEETTEECCS-SEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred EECCcCCeEECCEEcCC-CceEEcCCCCEEEEeecCCCCEEEEEEE
Confidence 99999999999999998 7778999999999965554334455544
No 7
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5e-17 Score=160.95 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=88.3
Q ss_pred hhccccCCCCCCCCCCc-------------eEEEEEecccccccCcceEEEecC-CceEeccCCC--------------C
Q 002902 62 VAGTYAAQPLQNYDPKV-------------WGVLTAISNNARKRHQGINILLTA-DEHCIGRLVD--------------D 113 (868)
Q Consensus 62 ~a~~~a~~p~~~~~~~~-------------WG~L~~~~~~~~~r~~g~~i~L~~-~~~~IGR~~~--------------~ 113 (868)
|+.++.+||.+..+... |..++..++.. .......|.|.. ..|+|||.+. .
T Consensus 2 ~~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~-~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~ 80 (158)
T 3els_A 2 AMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDK-DKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVV 80 (158)
T ss_dssp ---CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGG-GGCCSEEEECSSCSEEEEEECCCC---------CCCCC
T ss_pred ceeEecCCccccCCchhhhccccCcccCCceEEEEEeCCcc-CcccceEEEecCCCceEecccccccccccccccccccc
Confidence 45667777776655444 44555544320 000123566764 5799999963 3
Q ss_pred CceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCc
Q 002902 114 AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDL 192 (868)
Q Consensus 114 ~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~ 192 (868)
|||+|+++.||+.||.|.+.... +...|||.|+ |+|||||||.+|.+ +.++.|++||+|.||..+. ..
T Consensus 81 ~Di~l~~~~VSr~HA~I~~~~~~---------~~~~~~l~Dl~StNGT~VNg~ri~~-~~~~~L~~GD~I~~G~s~~-~~ 149 (158)
T 3els_A 81 ADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIPG-ARYIELRSGDVLTLSEFEE-DN 149 (158)
T ss_dssp CSEEECCTTSCSSCEEEEEEEET---------TEEEEEEEECSCSSCCEETTEECCT-TCCEECCTTEEEESSSCGG-GC
T ss_pred CCEEcCCCCCCcccEEEEEEccC---------CeeEEEEEeCCCCCccEECCEEcCC-CceEEcCCCCEEEECCCCC-CC
Confidence 59999999999999999987631 1235999999 99999999999998 6678999999999997542 22
Q ss_pred eEEEEEee
Q 002902 193 AFAFVFRD 200 (868)
Q Consensus 193 ~f~fvf~d 200 (868)
.|.|+|..
T Consensus 150 ~~elvF~~ 157 (158)
T 3els_A 150 DYELIFMN 157 (158)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 56666643
No 8
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.68 E-value=2.8e-17 Score=166.32 Aligned_cols=114 Identities=21% Similarity=0.334 Sum_probs=84.9
Q ss_pred CCCCCCCCCceEEEEEecccccccCcceEEEecCCc--eEeccCCCCCceeeCCCCCcccceeEEeeeccCCC--CCCCC
Q 002902 69 QPLQNYDPKVWGVLTAISNNARKRHQGINILLTADE--HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGD--LDHSP 144 (868)
Q Consensus 69 ~p~~~~~~~~WG~L~~~~~~~~~r~~g~~i~L~~~~--~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d--~~~~~ 144 (868)
.|.....+..|..|.+...... +..|.|..+. ++|||++.| ||+|+++.||+.||.|++....... ...+.
T Consensus 19 ~~~~~~~~g~~l~L~~~~~~~~----~~~i~L~~~~~~~~IGR~~~~-di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~ 93 (182)
T 1qu5_A 19 KSSKKKGNGRFLTLKPLPDSII----QESLEIQQGVNPFFIGRSEDC-NCKIEDNRLSRVHCFIFKKRHAVGKSMYESPA 93 (182)
T ss_dssp SCSCCSSSSCCEEECCCTTSSS----CSCCCBTTCCSSEEESSSTTS-SSCCCCTTSCSSCEEEEEECCCCCSSCCSSCC
T ss_pred eecccCCCccEEEEEeCCCCCc----ceEEEEcCCCceEEECCCCCC-CEEECCCCcChHHeEEEEecCccccccccccc
Confidence 3444555667888877764322 3457787665 999999987 9999999999999999987521100 01112
Q ss_pred CCCceEEEEeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCC
Q 002902 145 SGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPP 188 (868)
Q Consensus 145 ~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~ 188 (868)
.+...|||.|+|+|||||||.+|.+ +.++.|.+||+|.|+.++
T Consensus 94 ~~~~~~~l~DlStNGT~VNg~ri~~-~~~~~L~~GD~I~l~~d~ 136 (182)
T 1qu5_A 94 QGLDDIWYCHTGTNVSYLNNNRMIQ-GTKFLLQDGDEIKIIWDK 136 (182)
T ss_dssp CSCCEEEECCCSSSCCEETTEECCS-SEEEECCTTBCCEEEEEG
T ss_pred cccceEEEEECCcCCeEECCEEcCC-CcceEcCCCCEEEEEEcC
Confidence 2335799999999999999999998 777899999999995443
No 9
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.68 E-value=1.4e-16 Score=152.13 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=83.2
Q ss_pred CceEEEEEecccccccCcceEEEecCC-------------ceEeccCCCCCceeeCCC-CCcccceeEEeeeccCCCCCC
Q 002902 77 KVWGVLTAISNNARKRHQGINILLTAD-------------EHCIGRLVDDAHFQIDSN-AVSANHCKIYRKKFASGDLDH 142 (868)
Q Consensus 77 ~~WG~L~~~~~~~~~r~~g~~i~L~~~-------------~~~IGR~~~~~di~i~~~-~ISr~Hc~I~~~~~~~~d~~~ 142 (868)
.+|++|++.... .+.|.|..+ .++|||.+.| ||+|+++ .||+.||.|++...
T Consensus 3 ~~~~~L~~~~~~------~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~-di~l~~~~~vSr~Ha~i~~~~~------- 68 (127)
T 1g6g_A 3 NIVCRVICTTGQ------IPIRDLSADISQVLKEKRSIKKVWTFGRNPAC-DYHLGNISRLSNKHFQILLGED------- 68 (127)
T ss_dssp EEEEEEEESSSS------SCCEEEEECHHHHHHCCSSCCEEEEEESSTTS-SEECCSCTTSCSSCEEEEECTT-------
T ss_pred ceEEEEEECCCC------CCceEeeccccceeeeeecCCCCEEECCCCCC-CEEeCCCCCCChhHeEEEECCC-------
Confidence 578999887753 335666544 8999999997 9999998 69999999998521
Q ss_pred CCCCCceEEEEeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeec
Q 002902 143 SPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDV 201 (868)
Q Consensus 143 ~~~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~ 201 (868)
..|||.|+|+|||||||.+|.+ +.++.|.+||+|.||.... ...+.|+|+..
T Consensus 69 -----g~~~l~DlS~NGT~vNg~~l~~-~~~~~L~~Gd~I~lG~~~~-~~~i~f~~~~~ 120 (127)
T 1g6g_A 69 -----GNLLLNDISTNGTWLNGQKVEK-NSNQLLSQGDEITVGVGVE-SDILSLVIFIN 120 (127)
T ss_dssp -----SCEEEEECCSSCCEETTEECCT-TCCEECCTTCEEEECTTSG-GGCEEEEEEEC
T ss_pred -----CcEEEEECCcCCeEECCEEcCC-CCeEEcCCCCEEEECCCcc-CceEEEEEEeC
Confidence 2599999999999999999998 6778999999999997531 23567777653
No 10
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.67 E-value=4.1e-16 Score=152.02 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=71.5
Q ss_pred cceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCC
Q 002902 94 QGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSS 172 (868)
Q Consensus 94 ~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~ 172 (868)
.+..|.|....++|||.+.| ||+|+++.||+.||.|++.. ..|||.|+ |+|||||||.+|.+
T Consensus 57 ~g~~~~L~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~-------------~~~~l~DlgS~NGT~VNg~~i~~--- 119 (143)
T 2kb3_A 57 AGARFLLDQPTTTAGRHPES-DIFLDDVTVSRRHAEFRINE-------------GEFEVVDVGSLNGTYVNREPRNA--- 119 (143)
T ss_dssp TTCEEEECSSEEEESSCTTC-SBCCCCSSCCSSSEEEEEET-------------TEEEEEESCCSSCCEETTEECSE---
T ss_pred CCeEEEeCCCCeeccCCCCC-CEEeCCCCcChhhEEEEEEC-------------CEEEEEECCCcCCeEECCEEcce---
Confidence 46678998899999999997 99999999999999999854 26999999 89999999999985
Q ss_pred ccccCCCCEEEeccCCCCCceEEEEEee
Q 002902 173 EVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (868)
Q Consensus 173 ~~~L~~GD~I~~~~~~~~~~~f~fvf~d 200 (868)
+.|.+||+|.||. +.|+|..
T Consensus 120 -~~L~~GD~I~iG~-------~~l~f~~ 139 (143)
T 2kb3_A 120 -QVMQTGDEIQIGK-------FRLVFLA 139 (143)
T ss_dssp -EECCTTEEEEETT-------EEEEEEE
T ss_pred -EECCCCCEEEECC-------EEEEEEe
Confidence 7999999999993 5566543
No 11
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.67 E-value=2.6e-16 Score=151.41 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=78.6
Q ss_pred CceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-
Q 002902 77 KVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT- 155 (868)
Q Consensus 77 ~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~- 155 (868)
.+||+|+.+.... ..+..|.|..+.++|||.+.| ||+|+++.||+.||.|++.... ..|||.|+
T Consensus 22 ~p~g~L~v~~g~~---~~g~~~~L~~~~~~IGR~~~~-di~l~d~~VSr~HA~i~~~~~~-----------~~~~l~Dl~ 86 (132)
T 3va4_A 22 EPIGQLRLFSGTH---GPERDFPLYLGKNVVGRSPDC-SVALPFPSISKQHAVIEISAWN-----------KAPILQDCG 86 (132)
T ss_dssp CCSEEEEECCBTT---BSCEEEEECSEEEEEESSTTS-SEECCCTTSCTTCEEEEECSTT-----------SCCEEEECS
T ss_pred CCcEEEEEEeCCC---CCceEEEECCCCEEEccCCCC-CEEeCCCCcChhHEEEEEEcCC-----------CEEEEEECC
Confidence 4699998886532 146689999999999999997 9999999999999999986311 25899999
Q ss_pred CcCCeeeCCee--ccCCCCccccCCCCEEEecc
Q 002902 156 STNGTYVNCER--FKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 156 StNGTfVNg~k--i~k~~~~~~L~~GD~I~~~~ 186 (868)
|+|||||||.+ |.+ +.++.|++||+|.||.
T Consensus 87 S~NGT~vNg~~i~l~~-~~~~~L~~GD~I~lG~ 118 (132)
T 3va4_A 87 SLNGTQIVKPPRVLPP-GVSHRLRDQELILFAD 118 (132)
T ss_dssp CSSCEEETTTTEEECT-TCCEECCTTCEEEETT
T ss_pred CCCCeEECCEEcccCC-CCEEECCCCCEEEECC
Confidence 99999999998 555 5678999999999993
No 12
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.66 E-value=2.2e-16 Score=157.25 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=85.2
Q ss_pred CCCceEEEEEecccccccCcceEEEecCC-----------ceEeccCCCCCceeeCCC-CCcccceeEEeeeccCCCCCC
Q 002902 75 DPKVWGVLTAISNNARKRHQGINILLTAD-----------EHCIGRLVDDAHFQIDSN-AVSANHCKIYRKKFASGDLDH 142 (868)
Q Consensus 75 ~~~~WG~L~~~~~~~~~r~~g~~i~L~~~-----------~~~IGR~~~~~di~i~~~-~ISr~Hc~I~~~~~~~~d~~~ 142 (868)
++..|++|+.+.+. ..+..|.|... .++|||++.| ||+|+++ .||+.||.|++...
T Consensus 29 ~~~~~~~L~v~~G~----~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~-di~l~d~~~vSr~Ha~I~~~~~------- 96 (164)
T 1g3g_A 29 GENIVCRVICTTGQ----IPIRDLSADISQVLKEKRSIKKVWTFGRNPAC-DYHLGNISRLSNKHFQILLGED------- 96 (164)
T ss_dssp CSSCCEEEECSSSS----SCCEEECCCHHHHHHCSSSCCEEEEEESSSSS-SEECCCCTTTTSSCEEEEECST-------
T ss_pred CCCccEEEEEecCC----CCCeEEEeccccccccccccCCcEEECCCCCC-CEEeCCcCCcChhHEEEEECCC-------
Confidence 34567788877642 24566777643 8999999997 9999998 69999999998521
Q ss_pred CCCCCceEEEEeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeec
Q 002902 143 SPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDV 201 (868)
Q Consensus 143 ~~~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~ 201 (868)
..|||.|+|+|||||||.+|.+ +.++.|.+||+|.||.... ...+.|+|...
T Consensus 97 -----g~~~l~DlS~NGT~vNg~~i~~-~~~~~L~~GD~I~iG~~~~-~~~~~f~~~~~ 148 (164)
T 1g3g_A 97 -----GNLLLNDISTNGTWLNGQKVEK-NSNQLLSQGDEITVGVGVE-SDILSLVIFIN 148 (164)
T ss_dssp -----TCEEEEECCSSCEEETTEEECT-TEEEECCTTCEEEESCSST-TSCEEEEEEEC
T ss_pred -----CCEEEEECCCCCeEECCEEcCC-CCceEcCCCCEEEECCCCC-CCcEEEEEEeC
Confidence 2599999999999999999998 6778999999999997531 23677777654
No 13
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.66 E-value=3e-16 Score=151.84 Aligned_cols=104 Identities=24% Similarity=0.393 Sum_probs=81.0
Q ss_pred CceEEEEEecccccccCcceEEEec-CCceEeccCCCCCceeeCCCC----CcccceeEEeeeccCCCCCCCCCCCceEE
Q 002902 77 KVWGVLTAISNNARKRHQGINILLT-ADEHCIGRLVDDAHFQIDSNA----VSANHCKIYRKKFASGDLDHSPSGCSSVC 151 (868)
Q Consensus 77 ~~WG~L~~~~~~~~~r~~g~~i~L~-~~~~~IGR~~~~~di~i~~~~----ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~ 151 (868)
..| +|...+... ..|.|. ...++|||.+.| ||+|+++. ||+.||.|++... ..||
T Consensus 8 ~~w-~l~~~G~~~------~~~~l~~~~~~~IGR~~~~-di~l~~~~~~~~VSr~Ha~i~~~~~------------g~~~ 67 (138)
T 2pie_A 8 RSW-CLRRVGMSA------GWLLLEDGCEVTVGRGFGV-TYQLVSKICPLMISRNHCVLKQNPE------------GQWT 67 (138)
T ss_dssp EEE-EEEETTCSS------CBEEECTTCCEEEESSSSS-SEECCCSSCTTSSCSSCEEEEECTT------------SCEE
T ss_pred ccE-EEEEeCCCC------CEEEecCCCeEEECCCCCC-CEEeCCCCcCCCCChhHeEEEEcCC------------CcEE
Confidence 468 466555322 257776 678999999987 99999998 9999999988421 2599
Q ss_pred EEeC-CcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeec
Q 002902 152 LKDT-STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDV 201 (868)
Q Consensus 152 L~D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~ 201 (868)
|.|+ |+|||||||.+|.+ +.++.|.+||+|.||.+......|.|.|..+
T Consensus 68 l~Dl~S~NGT~vNg~~l~~-~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 68 IMDNKSLNGVWLNRARLEP-LRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp EEECSCSSCEEETTEECCT-TCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred EEECCCCCCeEECCEEcCC-CCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 9999 99999999999998 6778999999999998643323455665543
No 14
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.65 E-value=4e-16 Score=149.88 Aligned_cols=94 Identities=26% Similarity=0.283 Sum_probs=73.6
Q ss_pred CCceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC
Q 002902 76 PKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (868)
Q Consensus 76 ~~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~ 155 (868)
+..|..|+..+.. .+..|.|....++|||.+.| ||+|+++.||+.||.|++.... .+...|||.|+
T Consensus 8 p~~~~~lvv~~~~-----~~~~~~l~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~~~--------~g~~~~~l~Dl 73 (131)
T 3hx1_A 8 PLQEHILIILDDA-----GRREVLLTETFYTIGRSPRA-DIRIKSQFVSRIHAVLVRKSSD--------DVQAAYRIIDG 73 (131)
T ss_dssp -CCEEEEEEEETT-----EEEEEEECSSEEEEESSTTS-SEECCCSSSCTTCEEEEEC--------------CCEEEEES
T ss_pred CCcceEEEEECCC-----CcEEEEECCCCEEECCCCCC-CEEECCCCcChhheEEEEEccC--------CCceEEEEEEC
Confidence 3456666655432 24578899999999999997 9999999999999999886320 11125999998
Q ss_pred ------CcCCeeeCCeeccCCCCccccCCCCEEEeccC
Q 002902 156 ------STNGTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (868)
Q Consensus 156 ------StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~ 187 (868)
|+|||||||.+|.+ +.|.+||+|.||..
T Consensus 74 ~~~~~~S~NGT~vNg~~i~~----~~L~~GD~I~iG~~ 107 (131)
T 3hx1_A 74 DEDGQSSVNGLMINGKKVQE----HIIQTGDEIVMGPQ 107 (131)
T ss_dssp CTTSCCCSSCEEETTEEESE----EECCTTCEEECSTT
T ss_pred CCCCCCCCCceEECCEEeEe----EECCCCCEEEECCE
Confidence 99999999999986 79999999999953
No 15
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.64 E-value=1.9e-16 Score=153.60 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=69.7
Q ss_pred cceEEEecCC-ceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCC
Q 002902 94 QGINILLTAD-EHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNS 171 (868)
Q Consensus 94 ~g~~i~L~~~-~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~ 171 (868)
.+..|.|... .++|||.+..|||+|+++.||+.||.|++.... ..|||.|+ |+|||||||.+|.+ +
T Consensus 45 ~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~-----------~~~~l~Dl~S~NGT~vNg~~l~~-~ 112 (140)
T 2jpe_A 45 LIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHL-----------KRVFLIDLNSTHGTFLGHIRLEP-H 112 (140)
T ss_dssp EEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSS-----------CCEEEECCSCSSCEESSSCEECS-S
T ss_pred cceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCC-----------CcEEEEECCCCCCeEECCEECCC-C
Confidence 3557888875 599999998339999999999999999987521 25999998 99999999999997 6
Q ss_pred CccccCCCCEEEeccC
Q 002902 172 SEVNIDHGDIISFAAP 187 (868)
Q Consensus 172 ~~~~L~~GD~I~~~~~ 187 (868)
.++.|.+||+|.||..
T Consensus 113 ~~~~L~~gd~i~~G~~ 128 (140)
T 2jpe_A 113 KPQQIPIDSTVSFGAS 128 (140)
T ss_dssp SCCEECTTCCBBCSSC
T ss_pred ccEECCCCCEEEECCc
Confidence 6789999999999953
No 16
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.63 E-value=7e-16 Score=147.21 Aligned_cols=90 Identities=28% Similarity=0.357 Sum_probs=76.2
Q ss_pred CceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-
Q 002902 77 KVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT- 155 (868)
Q Consensus 77 ~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~- 155 (868)
.+|+.|+.+.... ..+..|.|....++|||.+.| ||+|+++.||+.||.|++.. ..|||.|+
T Consensus 10 ~~~~~L~v~~~~~---~~g~~~~l~~~~~~IGR~~~~-di~l~d~~VSr~Ha~i~~~~-------------~~~~l~Dl~ 72 (128)
T 1r21_A 10 WPTRRLVTIKRSG---VDGPHFPLSLSTCLFGRGIEC-DIRIQLPVVSKQHCKIEIHE-------------QEAILHNFS 72 (128)
T ss_dssp CCCEEEEEEEETT---EEEEEEECCSSEEEEESSTTS-SEECCCTTSCTTCEEEEECS-------------SCEEECCCC
T ss_pred CCceEEEEEeCCC---CCceEEEECCCCEEECCCCCC-CEEECCCCCChhHEEEEEEC-------------CEEEEEECC
Confidence 4577888766322 246678998899999999987 99999999999999999864 25999999
Q ss_pred CcCCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 156 STNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 156 StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
|+|||||||.+|.. ++.|.+||+|.||.
T Consensus 73 S~nGt~vNg~~i~~---~~~L~~Gd~i~iG~ 100 (128)
T 1r21_A 73 STNPTQVNGSVIDE---PVRLKHGDVITIID 100 (128)
T ss_dssp SSSCCEETTEECSS---CEECCTTEEEECSS
T ss_pred CCCCEEECCEECCC---cEEcCCCCEEEECC
Confidence 89999999999985 57999999999993
No 17
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.63 E-value=2.9e-15 Score=148.84 Aligned_cols=82 Identities=29% Similarity=0.428 Sum_probs=71.5
Q ss_pred cceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCC
Q 002902 94 QGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSS 172 (868)
Q Consensus 94 ~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~ 172 (868)
.+..|.|....++|||++.| ||+|+++.||+.||.|++.. ..|||.|+ |+|||||||.+|.+
T Consensus 66 ~g~~~~L~~~~~~IGR~~~~-di~l~d~~VSr~HA~I~~~~-------------~~~~l~DlgS~NGT~VNg~~i~~--- 128 (162)
T 2kfu_A 66 AGSRFLLDQAITSAGRHPDS-DIFLDDVTVSRRHAEFRLEN-------------NEFNVVDVGSLNGTYVNREPVDS--- 128 (162)
T ss_dssp CSCEEETTSSEEEEESCSSS-SEESTTTSSSSCSEEEEEET-------------TEEEEECCCCSSCEEETTBCCSE---
T ss_pred CCeEEEECCCCEEECCCCCC-CEEECCCCcChhhEEEEEEC-------------CEEEEEECCCCCCeEECCEEcce---
Confidence 46679999899999999987 99999999999999999864 26999999 89999999999975
Q ss_pred ccccCCCCEEEeccCCCCCceEEEEEee
Q 002902 173 EVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (868)
Q Consensus 173 ~~~L~~GD~I~~~~~~~~~~~f~fvf~d 200 (868)
+.|++||+|.||. +.|+|..
T Consensus 129 -~~L~~GD~I~iG~-------~~l~f~~ 148 (162)
T 2kfu_A 129 -AVLANGDEVQIGK-------FRLVFLT 148 (162)
T ss_dssp -EECCSSCEEEETT-------EEEEEEC
T ss_pred -EECCCCCEEEECC-------EEEEEEe
Confidence 7899999999993 4555554
No 18
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.62 E-value=2.2e-15 Score=141.30 Aligned_cols=87 Identities=25% Similarity=0.331 Sum_probs=73.0
Q ss_pred ceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-C
Q 002902 78 VWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-S 156 (868)
Q Consensus 78 ~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-S 156 (868)
.+..|+.+... ..+..|.|....++|||.+.| ||+|+++.||+.||.|++.. ..|||.|+ |
T Consensus 10 ~~~~L~v~~g~----~~g~~~~l~~~~~~IGR~~~~-di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~S 71 (115)
T 2xt9_B 10 GSALLVVKRGP----NAGSRFLLDQPTTSAGRHPDS-DIFLDDVTVSRRHAEFRLEG-------------GEFQVVDVGS 71 (115)
T ss_dssp SCEEEEEEEST----TTTCEEEECSSEEEEESSTTS-SEECCSTTSCSSCEEEEEET-------------TEEEEEECSC
T ss_pred CcEEEEEEeCC----CCCeEEEECCCCEEECCCCCC-CEEeCCcccChhheEEEEEC-------------CEEEEEECCC
Confidence 34455555431 246678998889999999987 99999999999999999864 26999999 8
Q ss_pred cCCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 157 TNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 157 tNGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
+|||||||.+|.+ +.|.+||+|.||.
T Consensus 72 ~nGt~vng~~i~~----~~L~~gd~i~iG~ 97 (115)
T 2xt9_B 72 LNGTYVNREPVDS----AVLANGDEVQIGK 97 (115)
T ss_dssp SSCEEETTEECSE----EEECTTCEEEETT
T ss_pred CCCeEECCEEcce----EECCCCCEEEECC
Confidence 9999999999975 7899999999993
No 19
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.62 E-value=2e-15 Score=139.43 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=71.6
Q ss_pred CCceEEEEEecccccccCcceEEEecCC-ceEeccCC-CCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEE
Q 002902 76 PKVWGVLTAISNNARKRHQGINILLTAD-EHCIGRLV-DDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLK 153 (868)
Q Consensus 76 ~~~WG~L~~~~~~~~~r~~g~~i~L~~~-~~~IGR~~-~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~ 153 (868)
+..|. |..+... ..|..|.|..+ .++|||.+ .| ||+|+++.||+.||.|++... ..|||.
T Consensus 2 ~~~~~-L~v~~G~----~~g~~~~l~~~~~~~iGR~~~~~-di~l~d~~vSr~Ha~i~~~~~------------~~~~l~ 63 (106)
T 3gqs_A 2 PSRFL-LKVLAGA----NIGAEFHLDSGKTYIVGSDPQVA-DIVLSDMSISRQHAKIIIGND------------NSVLIE 63 (106)
T ss_dssp -CEEE-EEECC-C----CTTCEEEECTTCEEEEESCTTTC-SEECCCTTSCSSCEEEEECTT------------SCEEEE
T ss_pred CceEE-EEEEeCC----CCcEEEEECCCCEEEEeECCCcC-CEEeCCCCcchhhcEEEECCC------------CcEEEE
Confidence 45674 4444421 24667888875 58999999 56 999999999999999998631 249999
Q ss_pred eC-CcCCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 154 DT-STNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 154 D~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
|+ |+|||||||.+|.+ ++.|.+||+|.||.
T Consensus 64 Dl~S~nGt~vng~~i~~---~~~L~~Gd~i~~G~ 94 (106)
T 3gqs_A 64 DLGSKNGVIVEGRKIEH---QSTLSANQVVALGT 94 (106)
T ss_dssp ECSCSSCCEETTEECSS---EEECCTTCCEEETT
T ss_pred ECcCCCCeEECCEECCC---CeECCCCCEEEECC
Confidence 99 99999999999986 46899999999993
No 20
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.61 E-value=1.8e-15 Score=142.31 Aligned_cols=90 Identities=21% Similarity=0.359 Sum_probs=74.0
Q ss_pred ceEEEEEecccccccCcceEEEecC-CceEeccC-CCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC
Q 002902 78 VWGVLTAISNNARKRHQGINILLTA-DEHCIGRL-VDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (868)
Q Consensus 78 ~WG~L~~~~~~~~~r~~g~~i~L~~-~~~~IGR~-~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~ 155 (868)
+|.+|..+... ..+..|.|.. ..++|||. ..| ||+|+++.||+.||+|++.. ..|||.|+
T Consensus 11 p~l~L~v~~g~----~~g~~~~l~~~~~~~iGR~~~~~-di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl 72 (118)
T 1uht_A 11 PSLRLVFVKGP----REGDALDYKPGSTIRVGRIVRGN-EIAIKDAGISTKHLRIESDS-------------GNWVIQDL 72 (118)
T ss_dssp CEEEEEESSST----TTTCBCCBCTTCCEEEESSSTTC-SEECCSSSSCTTCEEEEECS-------------SSEEEECC
T ss_pred CeEEEEEEeCC----CCCcEEEECCCCEEEEcCCCCCC-CEEeCCCCCchHHeEEEEEC-------------CEEEEEEC
Confidence 45666665532 2345677876 57999999 666 99999999999999999864 25999999
Q ss_pred -CcCCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 156 -STNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 156 -StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
|+|||||||.+|.+ +.++.|.+||+|.||.
T Consensus 73 ~S~nGT~vng~~l~~-~~~~~L~~gd~i~lG~ 103 (118)
T 1uht_A 73 GSSNGTLLNSNALDP-ETSVNLGDGDVIKLGE 103 (118)
T ss_dssp CCSSCCEESSSBCCT-TCEEECCTTEEEEETT
T ss_pred CCCCCeEECCEECCC-CCeEEcCCCCEEEECC
Confidence 99999999999987 6678999999999994
No 21
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.60 E-value=2.8e-15 Score=137.00 Aligned_cols=74 Identities=31% Similarity=0.422 Sum_probs=66.6
Q ss_pred ceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCc
Q 002902 95 GINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSE 173 (868)
Q Consensus 95 g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~ 173 (868)
+..|.|..+.++|||.+.| ||+|+++.||+.||.|++.. ..|||.|+ |+|||||||.++.+
T Consensus 15 g~~~~l~~~~~~IGR~~~~-di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~S~nGt~vng~~i~~---- 76 (100)
T 3po8_A 15 GRTYQLREGSNIIGRGQDA-QFRLPDTGVSRRHLEIRWDG-------------QVALLADLNSTNGTTVNNAPVQE---- 76 (100)
T ss_dssp CCEEECCSEEEEEESSTTC-SEECCCTTSCSSCEEEEECS-------------SCEEEEECSCSSCCEETTEECSE----
T ss_pred CcEEEECCCCEEEeCCCCC-CEECCCCCcChhhCEEEEeC-------------CEEEEEECCCCCCEEECCEECce----
Confidence 4578998889999999987 99999999999999999864 24999999 89999999999975
Q ss_pred cccCCCCEEEecc
Q 002902 174 VNIDHGDIISFAA 186 (868)
Q Consensus 174 ~~L~~GD~I~~~~ 186 (868)
+.|.+||+|.||.
T Consensus 77 ~~L~~gd~i~iG~ 89 (100)
T 3po8_A 77 WQLADGDVIRLGH 89 (100)
T ss_dssp EECCTTCEEEETT
T ss_pred EECCCCCEEEECC
Confidence 7899999999994
No 22
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.60 E-value=1.2e-15 Score=149.00 Aligned_cols=90 Identities=24% Similarity=0.383 Sum_probs=72.2
Q ss_pred EEEe-cCCceEeccCCCCCceeeCCCC----CcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCC
Q 002902 97 NILL-TADEHCIGRLVDDAHFQIDSNA----VSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKN 170 (868)
Q Consensus 97 ~i~L-~~~~~~IGR~~~~~di~i~~~~----ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~ 170 (868)
.|.| ....++|||.+.| ||+|+++. ||+.||.|++... ..|||.|+ |+|||||||.+|.+
T Consensus 29 ~~~l~~~~~~~IGR~~~~-di~l~~~~~~~~VSr~Ha~i~~~~~------------g~~~l~Dl~S~NGT~vNg~~i~~- 94 (145)
T 2csw_A 29 WLLLEDGCEVTVGRGFGV-TYQLVSKICPLMISRNHCVLKQNPE------------GQWTIMDNKSLNGVWLNRARLEP- 94 (145)
T ss_dssp BEECCTTCCEEEESSTTS-SEECCCSSCGGGSCTTCEEEEECTT------------SCEEEEBSSCSSCEEESSCBCCB-
T ss_pred eEEeCCCCcEEECCCCCC-CEEECCCCcCCCCChhHeEEEEcCC------------CeEEEEECCCCCCeEECCEECCC-
Confidence 4555 4568999999987 99999998 9999999998531 25999998 99999999999998
Q ss_pred CCccccCCCCEEEeccCCCCCceEEEEEee
Q 002902 171 SSEVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (868)
Q Consensus 171 ~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d 200 (868)
+.++.|++||+|.||.+......|.|.|..
T Consensus 95 ~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~ 124 (145)
T 2csw_A 95 LRVYSIHQGDYIQLGVPLENKENAEYEYEV 124 (145)
T ss_dssp TCCEECCSSCCEEESCCCTTCSSCSCCCCE
T ss_pred CccEECCCCCEEEECCCCCCCceEEEEEEe
Confidence 677899999999999753322244555543
No 23
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.57 E-value=1.4e-14 Score=140.28 Aligned_cols=93 Identities=24% Similarity=0.350 Sum_probs=75.8
Q ss_pred ceEEEEEecccccccCcceEEEecCC-----ceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEE
Q 002902 78 VWGVLTAISNNARKRHQGINILLTAD-----EHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCL 152 (868)
Q Consensus 78 ~WG~L~~~~~~~~~r~~g~~i~L~~~-----~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L 152 (868)
.|..|+.+... ..+..|.|... .++|||.+.| ||+|+++.||+.||.|++.... ..|||
T Consensus 6 ~~~~L~v~~G~----~~g~~~~l~~~~~~~~~~~IGR~~~~-di~l~d~~VSr~Ha~i~~~~~~-----------~~~~l 69 (139)
T 1mzk_A 6 SWLFLEVIAGP----AIGLQHAVNSTSSSKLPVKLGRVSPS-DLALKDSEVSGKHAQITWNSTK-----------FKWEL 69 (139)
T ss_dssp EEEEEEECSST----TCSCEEEECTTCSTTCSEEEESSSSC-SEECCCTTSSSEEEEEEEETTT-----------TEEEE
T ss_pred CeEEEEEEeCC----CCCeEEEecCCCCccceEEeeCCCCC-CEEeCCCCCChHHcEEEEECCC-----------CEEEE
Confidence 45677666532 34667888764 7999999997 9999999999999999987520 25999
Q ss_pred EeC-CcCCeeeCCeeccC-------CCCccccCCCCEEEecc
Q 002902 153 KDT-STNGTYVNCERFKK-------NSSEVNIDHGDIISFAA 186 (868)
Q Consensus 153 ~D~-StNGTfVNg~ki~k-------~~~~~~L~~GD~I~~~~ 186 (868)
.|+ |+|||||||.+|.+ .+.++.|++||+|.||.
T Consensus 70 ~DlgS~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~ 111 (139)
T 1mzk_A 70 VDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGT 111 (139)
T ss_dssp EETTCSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSS
T ss_pred EECCCCCCEEECCEECcCcccccccCCceEECCCCCEEEECC
Confidence 999 99999999999983 24568999999999995
No 24
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.56 E-value=8.3e-15 Score=144.69 Aligned_cols=80 Identities=30% Similarity=0.416 Sum_probs=70.2
Q ss_pred ceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCCCCc
Q 002902 95 GINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKNSSE 173 (868)
Q Consensus 95 g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~~~~ 173 (868)
+..|.|....++|||.+.| ||+|+++.||+.||+|.+.. ..|||+|+ |+|||||||.+|.+
T Consensus 77 g~~~~L~~~~~~IGR~~~~-dI~L~d~~VSr~HA~I~~~~-------------~~~~l~DlgStNGT~VNG~~i~~---- 138 (157)
T 3oun_A 77 GRTYQLREGSNIIGRGQDA-QFRLPDTGVSRRHLEIRWDG-------------QVALLADLNSTNGTTVNNAPVQE---- 138 (157)
T ss_dssp CCEEECCSEEEEEESSTTC-SEECCCTTSCTTCEEEEECS-------------SCEEEEECSCSSCCEETTEECSE----
T ss_pred CeEEEECCCcEEEEeCCCC-CEEeCCCCcChhHEEEEEEC-------------CEEEEEECCCCCCeEECCEECce----
Confidence 4578998889999999987 99999999999999999854 25999999 99999999999975
Q ss_pred cccCCCCEEEeccCCCCCceEEEEEe
Q 002902 174 VNIDHGDIISFAAPPQHDLAFAFVFR 199 (868)
Q Consensus 174 ~~L~~GD~I~~~~~~~~~~~f~fvf~ 199 (868)
+.|.+||+|.|+ .+.|+|+
T Consensus 139 ~~L~~GD~I~lG-------~~~l~fr 157 (157)
T 3oun_A 139 WQLADGDVIRLG-------HSEIIVR 157 (157)
T ss_dssp EECCTTCEEEET-------TEEEEEC
T ss_pred EECCCCCEEEEC-------CEEEEEC
Confidence 789999999999 3556664
No 25
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.55 E-value=1.2e-14 Score=163.10 Aligned_cols=111 Identities=24% Similarity=0.352 Sum_probs=89.2
Q ss_pred CCCCceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCC---------cccceeEEeeeccCCCCCCCC
Q 002902 74 YDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAV---------SANHCKIYRKKFASGDLDHSP 144 (868)
Q Consensus 74 ~~~~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~I---------Sr~Hc~I~~~~~~~~d~~~~~ 144 (868)
+.+.+||+|+++.... ..|.|..+.|+|||++.| |++|+++.| |++||.|++....
T Consensus 5 ~~~~~~g~l~~~~~~~------~~~~l~~~~~~iGR~~~~-~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~-------- 69 (419)
T 3i6u_A 5 PTPAPWARLWALQDGF------ANLECVNDNYWFGRDKSC-EYCFDEPLLKRTDKYRTYSKKHFRIFREVGP-------- 69 (419)
T ss_dssp -CCCCSEEEEECSSSS------CCEEECSSEEEEESSTTS-SEETTCTTGGGCSGGGGSCTTCEEEECCEET--------
T ss_pred ccCCCceEeeecCCCC------CceEecCCCEEecCCCcc-CEEECCcccccccccccccccceEEEEEcCC--------
Confidence 3456899999988643 378999999999999987 999999876 9999999886421
Q ss_pred CCCceEEEEeCCcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeeccCC
Q 002902 145 SGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVSRS 204 (868)
Q Consensus 145 ~~~~~~~L~D~StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~~~~ 204 (868)
.+...+||.|.|+|||||||.++++ +....|.+||.|.||... ...|+|.+....
T Consensus 70 ~~~~~~~i~D~S~nGt~vn~~~~~~-~~~~~l~~~d~i~~~~~~----~~~~~~~~~~~~ 124 (419)
T 3i6u_A 70 KNSYIAYIEDHSGNGTFVNTELVGK-GKRRPLNNNSEIALSLSR----NKVFVFFDLTVD 124 (419)
T ss_dssp TTEECCEEEECCSSCEEETTEECCT-TCEEECCTTEEEEESSTT----CEEEEEEESCSS
T ss_pred CCceEEEEEECCcCCceECcccccC-CCcccCCCCCEeeeeccc----cceEEEeccccc
Confidence 1224699999999999999999998 667789999999999754 355777776543
No 26
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.51 E-value=5.4e-14 Score=132.86 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=76.3
Q ss_pred ceEEEEEeccccccc-CcceEEEecCCceEeccC--CCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEe
Q 002902 78 VWGVLTAISNNARKR-HQGINILLTADEHCIGRL--VDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD 154 (868)
Q Consensus 78 ~WG~L~~~~~~~~~r-~~g~~i~L~~~~~~IGR~--~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D 154 (868)
.+.+|+.+..+...- ..+..|.|....++|||. +.| ||+|+++.||+.||.|.+.. ..|||.|
T Consensus 10 ~~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~~-di~l~~~~vSr~Ha~i~~~~-------------~~~~l~d 75 (120)
T 1wln_A 10 KLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDN-SIQLFGPGIQPHHCDLTNMD-------------GVVTVTP 75 (120)
T ss_dssp GCCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCSTT-CCCCCCTTCCSSCEEEEESS-------------SCEEEEE
T ss_pred CcCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCCC-cEEECCCCCchhheEEEEcC-------------CEEEEEE
Confidence 345677665422100 014568888889999974 566 99999999999999998853 2599999
Q ss_pred C-CcCCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeec
Q 002902 155 T-STNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDV 201 (868)
Q Consensus 155 ~-StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~ 201 (868)
+ |+|||||||.+|.. ++.|++||+|.||. ...|.|...
T Consensus 76 l~S~ngt~vNg~~i~~---~~~L~~GD~I~iG~------~~~~~f~~p 114 (120)
T 1wln_A 76 RSMDAETYVDGQRISE---TTMLQSGMRLQFGT------SHVFKFVDP 114 (120)
T ss_dssp SCSSSCEEETSCBCSS---CEEECTTCEEEETT------TEEEEEECS
T ss_pred CCCCCCEEECCEEcCC---CEECCCCCEEEECC------ceEEEEECC
Confidence 9 78999999999975 56899999999994 244555543
No 27
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.49 E-value=1.1e-13 Score=136.56 Aligned_cols=93 Identities=13% Similarity=0.219 Sum_probs=68.9
Q ss_pred EEEEecccccccCcceEEEecCCceEeccCCC--CCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEe-CCc
Q 002902 81 VLTAISNNARKRHQGINILLTADEHCIGRLVD--DAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TST 157 (868)
Q Consensus 81 ~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~--~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D-~St 157 (868)
+|+.++.+.. ......+.|..+.++|||... .|||+|+++.||+.||.|.+..... ...+|+.| .|+
T Consensus 40 hLvnLn~Dp~-ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~---------~~~~~~~d~~S~ 109 (154)
T 4ejq_A 40 HLVNLNEDPL-MSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGG---------SEAVVTLEPCEG 109 (154)
T ss_dssp EEEECCCCTT-CSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTS---------SSCEEEEEECTT
T ss_pred eEEEecCCcc-cCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCC---------ceeEEEEecCCC
Confidence 6666654332 112334667778999999862 2499999999999999999875311 12355555 599
Q ss_pred CCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 158 NGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 158 NGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
|||||||.+|.. ++.|++||+|.||.
T Consensus 110 ngt~VNG~~i~~---~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 110 ADTYVNGKKVTE---PSILRSGNRIIMGK 135 (154)
T ss_dssp CCEEETTEECCS---CEECCTTCEEEETT
T ss_pred CceEECCEEcCC---ceECCCCCEEEECC
Confidence 999999999965 57899999999994
No 28
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.47 E-value=1.8e-13 Score=130.23 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=68.7
Q ss_pred EEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCe
Q 002902 81 VLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGT 160 (868)
Q Consensus 81 ~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGT 160 (868)
+|+.++.+.. -.....+.|. ..++|||.+.| ||+|+++.||+.||.|.+... ..|||.|+++|||
T Consensus 28 hLvnLn~Dp~-~s~~l~y~L~-~~t~IGR~~~~-DI~L~~~~Vs~~Ha~I~~~~~------------g~~~l~dl~~ngt 92 (124)
T 3fm8_A 28 FLVNLNADPA-LNELLVYYLK-EHTLIGSANSQ-DIQLCGMGILPEHCIIDITSE------------GQVMLTPQKNTRT 92 (124)
T ss_dssp EEEETTCCTT-SSCCCEEECC-SEEEEESSTTC-SEECCSTTCCSSCEEEEECTT------------SCEEEEECTTCCE
T ss_pred EEEEeCCCCc-cCceEEEECC-CCeEECCCCCC-CEEECCCCeecceEEEEECCC------------CeEEEEECCCCCE
Confidence 6666654332 1122334554 46999999997 999999999999999987421 2489999999999
Q ss_pred eeCCeeccCCCCccccCCCCEEEecc
Q 002902 161 YVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 161 fVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
||||.+|.. ++.|++||+|.||.
T Consensus 93 ~VNG~~V~~---~~~L~~GD~I~lG~ 115 (124)
T 3fm8_A 93 FVNGSSVSS---PIQLHHGDRILWGN 115 (124)
T ss_dssp EETTEECCS---CEEECTTCEEEETT
T ss_pred EECCEEcCC---cEECCCCCEEEECC
Confidence 999999975 57999999999994
No 29
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.47 E-value=1e-13 Score=155.04 Aligned_cols=87 Identities=31% Similarity=0.447 Sum_probs=74.0
Q ss_pred CCceEEEEEecccccccCcceEEEecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC
Q 002902 76 PKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (868)
Q Consensus 76 ~~~WG~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~ 155 (868)
..+|.+|+... .|..|.|..+.++|||+++| ||+|+++.||+.||.|++.. ..|||.|+
T Consensus 286 ~~~~~~l~~~~-------~g~~~~l~~~~~~iGR~~~~-di~l~~~~vSr~Ha~i~~~~-------------~~~~l~Dl 344 (388)
T 2ff4_A 286 QQAVAYLHDIA-------SGRGYPLQAAATRIGRLHDN-DIVLDSANVSRHHAVIVDTG-------------TNYVINDL 344 (388)
T ss_dssp SBCCCEEEETT-------TCCEEECCSSEEEEESSTTS-SEECCCTTSCTTCEEEEECS-------------SCEEEEEC
T ss_pred CCCeEEEEECC-------CCcEEEECCCCEEEecCCCC-eEEECCCccChhHeEEEEEC-------------CEEEEEEC
Confidence 45677776543 34579999999999999997 99999999999999998854 25999998
Q ss_pred -CcCCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 156 -STNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 156 -StNGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
|+|||||||.+|.. ++.|++||+|.||.
T Consensus 345 ~S~nGt~vng~~i~~---~~~L~~gd~i~~G~ 373 (388)
T 2ff4_A 345 RSSNGVHVQHERIRS---AVTLNDGDHIRICD 373 (388)
T ss_dssp SCSSCCEETTEECSS---EEEECTTCEEEETT
T ss_pred CCCCCeEECCEECCC---ceECCCCCEEEECC
Confidence 89999999999953 57999999999993
No 30
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.24 E-value=6.1e-12 Score=135.56 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=73.8
Q ss_pred cceEEEecCCceEeccCCCC--CceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCeeeCCeeccCC
Q 002902 94 QGINILLTADEHCIGRLVDD--AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGTYVNCERFKKN 170 (868)
Q Consensus 94 ~g~~i~L~~~~~~IGR~~~~--~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGTfVNg~ki~k~ 170 (868)
.|..+.|..+.|+|||...+ ++|++++++|||+||.|........++. +.+...+||+|+ |+|||||||.+|..
T Consensus 12 ~Gkr~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~--~~~~~~l~I~DLgSknGTfVNGerI~~- 88 (325)
T 3huf_A 12 KGKSRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYF--TGGPCEFEVKDLDTKFGTKVNEKVVGQ- 88 (325)
T ss_dssp TTCCEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHH--HCCCCCEEEEECSCSSCEEETTEECCT-
T ss_pred CCeEEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccc--cCCcceEEEEECCCCCCEEECCEECCC-
Confidence 35567888888999999763 2469999999999999987632110110 112246999998 99999999999975
Q ss_pred CCccccCCCCEEEeccCCCCCceEEEEEeecc
Q 002902 171 SSEVNIDHGDIISFAAPPQHDLAFAFVFRDVS 202 (868)
Q Consensus 171 ~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~~ 202 (868)
..+....+||.|.||.-+ ..|.+.|..+.
T Consensus 89 ~~~~L~~dgd~I~fG~~~---~~fRl~W~P~V 117 (325)
T 3huf_A 89 NGDSYKEKDLKIQLGKCP---FTINAYWRSMC 117 (325)
T ss_dssp TCEEECSSEEEEEETTCS---SCEEEEECCCC
T ss_pred ceeeecCCCCEEEecCCc---ceEEEEEeeeE
Confidence 444444689999999643 46666666543
No 31
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.20 E-value=2.2e-06 Score=87.92 Aligned_cols=21 Identities=14% Similarity=0.136 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002902 251 NTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 251 n~eLr~qLEe~~~ei~~Lr~e 271 (868)
+..|..++..+...+..+..+
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEAD 28 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 333444444444443334333
No 32
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.20 E-value=2.3e-06 Score=87.73 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 247 LQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 247 LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
|..++..+..++..+...+..++..
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~ 35 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDR 35 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.12 E-value=2.5e-10 Score=104.99 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=69.6
Q ss_pred EEEEecccccccCcceEEEecCCce-EeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCC
Q 002902 81 VLTAISNNARKRHQGINILLTADEH-CIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNG 159 (868)
Q Consensus 81 ~L~~~~~~~~~r~~g~~i~L~~~~~-~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNG 159 (868)
+|++.+.. ...|.|..+.. +|||++.+ .|.+..+||+||.|...... ..|+|+++++|+
T Consensus 6 ~L~~~~~~------~~~I~L~~g~~v~iGR~p~t---~I~DkrcSR~h~~L~~~~~~-----------g~v~vk~lg~Np 65 (102)
T 3kt9_A 6 WLVRQDSR------HQRIRLPHLEAVVIGRGPET---KITDKKCSRQQVQLKAECNK-----------GYVKVKQVGVNP 65 (102)
T ss_dssp EEEETTST------TCEEECCBTCEEEECSSTTT---CCCCTTSCSSCEEEEEETTT-----------TEEEEEECSSSC
T ss_pred EEEecCCC------CCcEEcCCCCcEEeccCCcc---ccccCcccCcceEEEEecCC-----------CEEEEEECcCCC
Confidence 46666642 23688887765 67999976 44689999999999887521 258999999999
Q ss_pred eeeCCeeccCCCCccccCCCCEEEeccC
Q 002902 160 TYVNCERFKKNSSEVNIDHGDIISFAAP 187 (868)
Q Consensus 160 TfVNg~ki~k~~~~~~L~~GD~I~~~~~ 187 (868)
|||||.+|.+ +..+.|++||+|.+...
T Consensus 66 ~~vng~~l~k-~~~~~L~~GD~l~Ll~~ 92 (102)
T 3kt9_A 66 TSIDSVVIGK-DQEVKLQPGQVLHMVNE 92 (102)
T ss_dssp CEETTEECCB-TCEEEECTTCCEEEETT
T ss_pred CeECCEEcCC-CCeEEeCCCCEEEEccC
Confidence 9999999999 78899999999999854
No 34
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.09 E-value=1.9e-10 Score=145.23 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 458 QNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 458 k~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
+.....+...++.++.++..++.++..+..++..+...+..++.++..
T Consensus 1052 e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~ 1099 (1184)
T 1i84_S 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099 (1184)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444444433
No 35
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.07 E-value=3.6e-10 Score=105.05 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=75.0
Q ss_pred EEEEEecccccccCcceEEEec--CCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCc
Q 002902 80 GVLTAISNNARKRHQGINILLT--ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTST 157 (868)
Q Consensus 80 G~L~~~~~~~~~r~~g~~i~L~--~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~St 157 (868)
.+|+|++... +.|.|. ...++|||++. ..|.+..|||+||.|..+... ..+.++++++
T Consensus 10 c~L~~~~~~~------~~I~Lp~~~g~~viGR~p~---t~I~DkrcSR~hv~L~ad~~~-----------~~v~vk~lG~ 69 (110)
T 2brf_A 10 LWLESPPGEA------PPIFLPSDGQALVLGRGPL---TQVTDRKCSRTQVELVADPET-----------RTVAVKQLGV 69 (110)
T ss_dssp EEEECSTTSS------CCEECCSTTCCEEECSBTT---TTBCCTTSCSSCEEEEEETTT-----------TEEEEEECSS
T ss_pred EEEEeCCCCC------CcEEeccCCCCEEEcCCCC---cccccccceeeeEEEEEecCC-----------CEEEEEEccc
Confidence 4577777532 268885 68999999984 357889999999999876531 3688999999
Q ss_pred CCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEe
Q 002902 158 NGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFR 199 (868)
Q Consensus 158 NGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~ 199 (868)
|+|||||.+|.+ +.++.|++||+|.|.... ..|.|+|.
T Consensus 70 Np~~vng~~l~k-~~~~~L~~GD~leLl~g~---y~~~v~f~ 107 (110)
T 2brf_A 70 NPSTTGTQELKP-GLEGSLGVGDTLYLVNGL---HPLTLRWE 107 (110)
T ss_dssp SCCEEC-CBCCT-TCEEEEETTCEEEEETTE---EEEEEEEE
T ss_pred CCcEECCEEcCC-CCEEEecCCCEEEEccCC---eEEEEEec
Confidence 999999999999 888999999999997431 24666663
No 36
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.03 E-value=8.5e-10 Score=106.18 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=78.7
Q ss_pred EEEEEecccccccCcceEEEec--CCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCc
Q 002902 80 GVLTAISNNARKRHQGINILLT--ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTST 157 (868)
Q Consensus 80 G~L~~~~~~~~~r~~g~~i~L~--~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~St 157 (868)
-+|++++... ..|.|. ...++|||++. ..|.+..|||+||.|..+... ..+.++++++
T Consensus 10 c~L~p~d~~~------~~I~Lp~~~g~vvIGRgPe---t~ItDkRcSR~qv~L~ad~~~-----------g~V~Vk~lG~ 69 (143)
T 1yj5_C 10 LWLQSPTGGP------PPIFLPSDGQALVLGRGPL---TQVTDRKCSRNQVELIADPES-----------RTVAVKQLGV 69 (143)
T ss_dssp EEEECCTTSC------CCEECCTTTCEEEECSBTT---TTBCCSSSCSSCEEEEEETTT-----------TEEEEEECSS
T ss_pred EEEEecCCCC------CcEEeccCCCCEEEcCCCc---cccccccccceeEEEEEecCC-----------CeEEEEEccc
Confidence 3577776432 268885 68999999984 468899999999999876531 2588999999
Q ss_pred CCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEeecc
Q 002902 158 NGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDVS 202 (868)
Q Consensus 158 NGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d~~ 202 (868)
|+|||||.+|.+ +.++.|++||+|.|.... ..|.|+|....
T Consensus 70 NP~~vng~~L~k-~~~~~L~~GD~LeLl~g~---y~f~V~f~e~~ 110 (143)
T 1yj5_C 70 NPSTVGVHELKP-GLSGSLSLGDVLYLVNGL---YPLTLRWEELS 110 (143)
T ss_dssp SCCEETTEECCT-TCEEEECTTCEEESSSSC---SEEEEEEEECC
T ss_pred CCcEECCEEecC-CCEEEecCCCEEEEecCC---ceEEEEecCCC
Confidence 999999999999 888999999999997542 35778886543
No 37
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.00 E-value=3.9e-10 Score=102.36 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=53.1
Q ss_pred EecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCe-eeCCeeccCCCCccccC
Q 002902 99 LLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGT-YVNCERFKKNSSEVNID 177 (868)
Q Consensus 99 ~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGT-fVNg~ki~k~~~~~~L~ 177 (868)
+....-|+|||.+.| +++|++|+||+.||.|.+... -.|+. .|+||| ||||.+++ ++.|.
T Consensus 17 l~~~~~~rIGR~~~~-~l~LddpsVs~~HAti~~~~~-------------G~~~l-~S~nGtVFVNGqrv~----~~~I~ 77 (102)
T 3uv0_A 17 LKADTIYRIGRQKGL-EISIADESMELAHATACILRR-------------GVVRL-AALVGKIFVNDQEET----VVDIG 77 (102)
T ss_dssp CCTTCCEEEESSTTS-TEECCCTTSCTTCEEEEEEET-------------TEEEE-EESSSCEEETTEEES----EEEEC
T ss_pred eecCcEEEEcCCCCC-cEEECCcccccceEEEEecCC-------------ceEEE-EeccCcEEECCEEee----eEEcc
Confidence 334557999999998 999999999999999998763 24553 399995 99999994 47899
Q ss_pred CCCE
Q 002902 178 HGDI 181 (868)
Q Consensus 178 ~GD~ 181 (868)
.||.
T Consensus 78 ~gDt 81 (102)
T 3uv0_A 78 MENA 81 (102)
T ss_dssp GGGC
T ss_pred CCcc
Confidence 9999
No 38
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.00 E-value=2.1e-09 Score=108.93 Aligned_cols=95 Identities=14% Similarity=0.212 Sum_probs=71.9
Q ss_pred EEEEEecccccccCcceEEEecCCceEeccCCC--CCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCc
Q 002902 80 GVLTAISNNARKRHQGINILLTADEHCIGRLVD--DAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTST 157 (868)
Q Consensus 80 G~L~~~~~~~~~r~~g~~i~L~~~~~~IGR~~~--~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~St 157 (868)
-+|+.++.+.. -.....+.|..+.++|||... -+||+|..+.|+..||.|......+ ....++|...+.
T Consensus 69 PhLvnLn~Dp~-ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~--------~~~~vtl~p~~~ 139 (184)
T 4egx_A 69 PHLVNLNEDPL-MSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGG--------SEAVVTLEPCEG 139 (184)
T ss_dssp CEEEECCCCTT-CSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSS--------CSCEEEEEECTT
T ss_pred ceEEeccCCcc-cCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCC--------ceEEEEEeeCCC
Confidence 36776654432 123345677778899999753 2499999999999999998764311 124688888888
Q ss_pred CCeeeCCeeccCCCCccccCCCCEEEecc
Q 002902 158 NGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (868)
Q Consensus 158 NGTfVNg~ki~k~~~~~~L~~GD~I~~~~ 186 (868)
+.|||||.+|.. ++.|++||.|.||.
T Consensus 140 a~t~VNG~~I~~---~~~L~~GDrI~lG~ 165 (184)
T 4egx_A 140 ADTYVNGKKVTE---PSILRSGNRIIMGK 165 (184)
T ss_dssp CCEEETTEECCS---CEECCTTCEEEETT
T ss_pred CeEEEcCEEccc---cEEcCCCCEEEECC
Confidence 999999999976 58999999999994
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.98 E-value=9.5e-10 Score=138.92 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 364 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEE 364 (868)
+..++......+.+.+..+..+...+.+++.++.++..+++.++..+.++...+..++.++..++.++++.
T Consensus 897 l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleel 967 (1184)
T 1i84_S 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967 (1184)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666667777777777777777777777777777777776666666666666553
No 40
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.96 E-value=5.3e-10 Score=105.18 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=76.9
Q ss_pred EEEEEecccccccCcceEEEec--CCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCc
Q 002902 80 GVLTAISNNARKRHQGINILLT--ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTST 157 (868)
Q Consensus 80 G~L~~~~~~~~~r~~g~~i~L~--~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~St 157 (868)
-+|+|++... +.|.|. ...++|||++. ..|.+..|||+||.|..+... ..+.++++++
T Consensus 17 c~L~~~~~~~------~~I~Lp~~~g~~viGRgp~---t~I~DkrcSR~qv~L~ad~~~-----------~~v~vk~lG~ 76 (119)
T 1ujx_A 17 LWLQSPTGGP------PPIFLPSDGQALVLGRGPL---TQVTDRKCSRNQVELIADPES-----------RTVAVKQLGV 76 (119)
T ss_dssp EEEECCSSSC------CCCCCCTTSCCEEESBBTT---TTBCCTTSCTTSEEEEEETTT-----------TEEEEEECSS
T ss_pred EEEEeCCCCC------CcEEeccCCCCEEEcCCCC---cccccccccceeEEEEEecCC-----------CEEEEEEccc
Confidence 4577777532 257775 68999999984 467899999999999876531 3688999999
Q ss_pred CCeeeCCeeccCCCCccccCCCCEEEeccCCCCCceEEEEEee
Q 002902 158 NGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (868)
Q Consensus 158 NGTfVNg~ki~k~~~~~~L~~GD~I~~~~~~~~~~~f~fvf~d 200 (868)
|+|||||.+|.+ +.++.|++||+|.|.... ..|.|+|..
T Consensus 77 NP~~vng~~l~k-~~~~~L~~GD~l~Ll~g~---y~~~v~f~~ 115 (119)
T 1ujx_A 77 NPSTVGVQELKP-GLSGSLSLGDVLYLVNGL---YPLTLRWSG 115 (119)
T ss_dssp SCCBSSSSBCCT-TCEEEEETTCCCBCBTTB---SCCEEEECC
T ss_pred CCcEECCEEecC-CCEEEecCCCEEEEecCC---eEEEEEecc
Confidence 999999999999 888999999999987542 246677765
No 41
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.79 E-value=2.5e-08 Score=94.36 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=66.7
Q ss_pred CcceEEEecCCceEeccCC-CCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeCCcCCeeeCCeeccCCC
Q 002902 93 HQGINILLTADEHCIGRLV-DDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNS 171 (868)
Q Consensus 93 ~~g~~i~L~~~~~~IGR~~-~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~StNGTfVNg~ki~k~~ 171 (868)
..|..+.|..+.++||.++ .| ||+|.++.||+.||.|..... .|+|. -|.|||||||.++.. +
T Consensus 14 ~~G~~l~L~~~~~~IGs~~~~~-DLvL~D~~Vs~~H~~L~~~~~-------------g~~L~-~s~ngt~vdG~~v~~-~ 77 (123)
T 4a0e_A 14 HRGVEVELPHGRCVFGSDPLQS-DIVLSDSEIAPVHLVLMVDEE-------------GIRLT-DSAEPLLQEGLPVPL-G 77 (123)
T ss_dssp GTTCEEEECSEEEEEESCTTTC-SEECCCTTSCSSCEEEEEETT-------------EEEEE-EESSCCEETTEECCT-T
T ss_pred CCCcEEEcCCCcEEECCCCCCC-CEEEeCCCccceeEEEEECCC-------------eEEEE-eccCCEEECCEEccc-c
Confidence 5688899999999999999 77 999999999999999988652 58886 688999999999876 2
Q ss_pred CccccCCCCEEEecc
Q 002902 172 SEVNIDHGDIISFAA 186 (868)
Q Consensus 172 ~~~~L~~GD~I~~~~ 186 (868)
..|..|+.|.+|.
T Consensus 78 --~~L~~g~~l~lG~ 90 (123)
T 4a0e_A 78 --TLLRAGSCLEVGF 90 (123)
T ss_dssp --CBCCTTSCEEETT
T ss_pred --cccCCCCEEEEcc
Confidence 3899999999994
No 42
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.30 E-value=6.7e-07 Score=93.97 Aligned_cols=69 Identities=25% Similarity=0.198 Sum_probs=53.0
Q ss_pred ecCCceEeccCCCCCceeeCCCCCcccceeEEeeeccCCCCCCCCCCCceEEEEeC-CcCCe-eeCCeeccCCCCccccC
Q 002902 100 LTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT-STNGT-YVNCERFKKNSSEVNID 177 (868)
Q Consensus 100 L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~d~~~~~~~~~~~~L~D~-StNGT-fVNg~ki~k~~~~~~L~ 177 (868)
+....++|||.+.| ||+|+++ + |+.|.+.. .. +...|||+|+ |+||| ||||.+|.. ...|.
T Consensus 89 ~~~~~itIG~~~~~-dI~l~~~-~---~~~~~~~~-~~--------~~~~~~l~~l~s~ngtvyvNg~~i~~---~~~L~ 151 (238)
T 1wv3_A 89 SIQDTMTIGPNAYD-DMVIQSL-M---NAIIIKDF-QS--------IQESQYVRIVHDKNTDVYINYELQEQ---LTNKA 151 (238)
T ss_dssp SSCSEEEEESSTTS-SEECTTC-S---SCEEEECG-GG--------HHHHCEEEEECCTTCCEEETTEECCS---SEEEE
T ss_pred cCCceEEEeCCCCC-eEEeCCC-e---eEEEEecc-cC--------cCCcEEEEEccCCCCCEEECCEEecc---ceecc
Confidence 33448999999887 9999988 3 57777761 00 0014899998 78997 999999976 35799
Q ss_pred -CCCEEEec
Q 002902 178 -HGDIISFA 185 (868)
Q Consensus 178 -~GD~I~~~ 185 (868)
.||.|.|+
T Consensus 152 ~~GD~I~ig 160 (238)
T 1wv3_A 152 YIGDHIYVE 160 (238)
T ss_dssp ETTCEEEET
T ss_pred CCcCEEEEC
Confidence 99999998
No 43
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.71 E-value=0.01 Score=58.78 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~~~~EE 371 (868)
..|+.||.+++.+|......-..+-..-+++...+..+...+.++...+..|......|+.++..|+.+|+.|++.+...
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~ 88 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHD 88 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666555444433333344444444444444455555555666666677777788888888888655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002902 372 RENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKL 433 (868)
Q Consensus 372 lEe~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eL 433 (868)
. +.+.+++..+..+..++...+.++. ....+......++...+|+....-=+|.-+|
T Consensus 89 s-e~~~elq~ri~~L~~El~~~k~~~~----k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eL 145 (168)
T 3o0z_A 89 S-EMIGDLQARITSLQEEVKHLKHNLE----KVEGERKEAQDMLNHSEKEKNNLEIDLNYKL 145 (168)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2 3466777777766665544444333 4455555555566666654443333344433
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=97.64 E-value=0.00048 Score=65.88 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=67.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le 500 (868)
+++..+..|..+++.++.....|+..+..++..... ....++..+..++.++..++.++.....+|+++++.+-+|+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld 118 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLE 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555554433 33455889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002902 501 LDILAATRDLDFE 513 (868)
Q Consensus 501 ~ELeka~reLE~E 513 (868)
.||..|++.||+|
T Consensus 119 ~EIatYRkLLEGE 131 (131)
T 3tnu_A 119 QEIATYRRLLEGE 131 (131)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHhHCcC
Confidence 9999999999864
No 45
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=97.61 E-value=0.00061 Score=60.36 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 432 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 432 eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
+++.++.....|+..+..++...... ...++..+..++.++..++.++.....+|+++++.+-+|+.||..|++.||
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~---~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVE---AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34555666666666666666665443 445588999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 002902 512 FERRRL 517 (868)
Q Consensus 512 ~Ek~rL 517 (868)
++..||
T Consensus 79 GEe~Rl 84 (84)
T 1gk4_A 79 GEESRI 84 (84)
T ss_dssp C-----
T ss_pred CCcccC
Confidence 987764
No 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.61 E-value=0.013 Score=61.85 Aligned_cols=6 Identities=17% Similarity=0.075 Sum_probs=2.7
Q ss_pred cccccc
Q 002902 583 RTIVGE 588 (868)
Q Consensus 583 ~~~~~~ 588 (868)
|+-.||
T Consensus 199 ~~C~GC 204 (256)
T 3na7_A 199 QACGGC 204 (256)
T ss_dssp TBCTTT
T ss_pred CccCCC
Confidence 344444
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=97.58 E-value=0.00067 Score=64.68 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=66.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLE 500 (868)
Q Consensus 421 K~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le 500 (868)
+++..+..|..+++.++.....|+..+..++..... ....++..+..++.++..++.++.....+|+++++.+-+|+
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555444332 34456888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002902 501 LDILAATRDLDFE 513 (868)
Q Consensus 501 ~ELeka~reLE~E 513 (868)
.||..|++.||+|
T Consensus 117 ~EIatYRkLLEgE 129 (129)
T 3tnu_B 117 VEIATYRKLLEGE 129 (129)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHhHCcC
Confidence 9999999998764
No 48
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=97.56 E-value=0.00031 Score=62.53 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 432 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLD 511 (868)
Q Consensus 432 eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE 511 (868)
+++.++.+...|+..+..++....- ....++..+..++.++.+++.++.....+|+++++.+-+|+.||..|++.||
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~---~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLAR---ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4555666666677777777665533 4455688999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 002902 512 FERRRL 517 (868)
Q Consensus 512 ~Ek~rL 517 (868)
.+..||
T Consensus 81 GEe~Rl 86 (86)
T 1x8y_A 81 GEEERL 86 (86)
T ss_dssp HHHCC-
T ss_pred CCcccC
Confidence 987653
No 49
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.52 E-value=0.0061 Score=58.07 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
..+..+|..-+..+.+.+..+..+...+..|+..+.++..+++..+..+..|...+++++..+.+|+.+|++..
T Consensus 51 ~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 51 NDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777888889999999999999999999999999999999999999999999999999999999998753
No 50
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.50 E-value=0.021 Score=56.47 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 436 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR 515 (868)
Q Consensus 436 ~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~ 515 (868)
++....++.+....++..+.+.+.++..++.....|+.++..|+..|+.++..+....+.+..|+..|..+..+++.-+.
T Consensus 32 lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677777777778888888888888888888888888888888887777777777777666666665555
Q ss_pred HHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 002902 516 RLKAARERIMLRETQL-RAFYSTTEEISVLFARQQEQLKAMQKTLEDEENY 565 (868)
Q Consensus 516 rLq~erErLq~reqQl-kae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~ 565 (868)
++ .++....+++ .....-..+.++.-=.+.-+|+.||..|+-|.+.
T Consensus 112 ~~----~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~ 158 (168)
T 3o0z_A 112 NL----EKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNE 158 (168)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44 3333333333 1111122222322223446788888888887654
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.47 E-value=0.015 Score=58.77 Aligned_cols=116 Identities=11% Similarity=0.193 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 002902 247 LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKE----LAEISRISAEQ 322 (868)
Q Consensus 247 LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~----l~el~~~k~kL 322 (868)
+......|+..+.+++.....|+.+........++-..++...+ .++...+..++.++.....+ ++.+...+..|
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~-~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l 100 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN-QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666655444444444444444444 33444455554444444333 33344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 323 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 323 EsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
......|..++-.++..+++++...+-....+.+++..|..
T Consensus 101 ~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ 141 (189)
T 2v71_A 101 RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQ 141 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444444444444444444444444444444444433
No 52
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.46 E-value=0.026 Score=59.50 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 002902 428 SLKLKLDETRE 438 (868)
Q Consensus 428 dL~~eLE~~ra 438 (868)
+|-..++.++.
T Consensus 176 ~lL~~Yerir~ 186 (256)
T 3na7_A 176 KIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.43 E-value=0.039 Score=55.76 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
+.....+++.++.+++..+.+....-..|+. +|...|..++..+.+|...+.+|...+..++..+
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777777777777766 4456666666666666666655555555555444
No 54
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.23 E-value=0.11 Score=71.52 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 002902 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA---ATRDLDFERRRLKAARERI 524 (868)
Q Consensus 448 r~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek---a~reLE~Ek~rLq~erErL 524 (868)
..++..++.-+......+.++++++.++..|+.+++....+.+.+...+...+..|.. ++.-|..|+.|=..+...+
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 3333444444444445555666666666666666666666666666666666666654 5556777888876666666
Q ss_pred HHHHHHH
Q 002902 525 MLRETQL 531 (868)
Q Consensus 525 q~reqQl 531 (868)
......+
T Consensus 2097 ~~~~~~L 2103 (3245)
T 3vkg_A 2097 NTQMSTV 2103 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6554444
No 55
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=97.11 E-value=0.00075 Score=61.19 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 433 LDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDF 512 (868)
Q Consensus 433 LE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~ 512 (868)
+..++.....|++.++.++..+..+.. .++..+..++.++.+++.++.....+|+++.+.+-+|+.||..|++.||+
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~---~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLEG 90 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKD---NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEG 90 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444555556667777777766655444 44888999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 002902 513 ERRRL 517 (868)
Q Consensus 513 Ek~rL 517 (868)
+..||
T Consensus 91 Ee~RL 95 (95)
T 3mov_A 91 EEERL 95 (95)
T ss_dssp CC---
T ss_pred CccCC
Confidence 87664
No 56
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.94 E-value=0.24 Score=68.06 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=9.0
Q ss_pred eEEEEEeeccCCC
Q 002902 193 AFAFVFRDVSRST 205 (868)
Q Consensus 193 ~f~fvf~d~~~~~ 205 (868)
.+.|+|.|..+.+
T Consensus 1705 ~~vFL~tD~qi~~ 1717 (3245)
T 3vkg_A 1705 KICFIFDESNVLE 1717 (3245)
T ss_dssp CEEEEEEGGGCSS
T ss_pred CEEEEEecccccc
Confidence 5778888775554
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.94 E-value=0.011 Score=74.20 Aligned_cols=51 Identities=8% Similarity=0.239 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHH
Q 002902 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK----SQKVTIDELKTQLDE 363 (868)
Q Consensus 313 ~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~----kLe~qI~ELq~qLEE 363 (868)
..+...+.+|+..+.+|..+|...+..+.+|...++ .+..++.+|+.++++
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~ 971 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334455667777777777777666666666555543 333444445444444
No 58
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.89 E-value=0.016 Score=72.67 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 002902 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEISVL 544 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~ 544 (868)
+.++..++.++.++++++.....++..+.+....+..+|+.-...|+.+...|+.+++.|+..+.....++. +..
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~--- 1057 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETM--- 1057 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---
Confidence 344555555555555555555555555555555555555555555666666666555555533333222221 111
Q ss_pred HHHHHHHHHHHhhhHHHHhh
Q 002902 545 FARQQEQLKAMQKTLEDEEN 564 (868)
Q Consensus 545 ~k~~~~qLr~LQ~eLE~E~r 564 (868)
.......-..|+.+||+++.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1058 EKKLVEETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 12222355678888888654
No 59
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.77 E-value=0.14 Score=50.18 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~ 320 (868)
|++...|+..+..++.+++.....+..+... +.+ +..+...+ +.+...+..|...+.+....+..++..+.
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~~----r~~----~~~l~~~~-~~~~~e~~~L~~~l~~E~~~R~~aE~~~~ 82 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQL----KED----YNTLKREL-SDRDDEVKRLREDIAKENELRTKAEEEAD 82 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH----HHH----HHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778777777777665554443322 222 22222222 45777788899999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002902 321 EQKHEMEDLNDR-LSASMQSCTEANEIMKSQKVTIDELKTQLDEE 364 (868)
Q Consensus 321 kLEsEl~EL~~q-Le~~e~~~~eL~k~l~kLe~qI~ELq~qLEEE 364 (868)
+++.++++|.+. +++++..++.+......++.....|+.+|.+-
T Consensus 83 ~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 83 KLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 68888888888888778887777787777654
No 60
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.37 E-value=0.34 Score=45.99 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
+.+..++..+..++...+..+.++.....++..+.++|..+|......+.++.....+|...-.+|...|.+
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e 87 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777888888888888888888887777777776666666665554444444433
No 61
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.28 E-value=0.11 Score=46.97 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR-LSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~q-Le~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
+...+..|...|.+....+..+...+.+++.++++|... +++++..++.+......++.....|+.+|.+
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566777888888888999999999999999999988 6788888888887777778777778877765
No 62
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=96.20 E-value=0.014 Score=50.56 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 462 ASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLK 518 (868)
Q Consensus 462 ~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq 518 (868)
..++..+..++.++.+++.++.....+|+++++.+-+|+.||..|++.||.+..||.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~Rl~ 64 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLR 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 345888899999999999999999999999999999999999999999999988763
No 63
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.06 E-value=0.18 Score=47.37 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAA 506 (868)
Q Consensus 427 EdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka 506 (868)
.+|+..++.+......++-.+..+...+++.+.++..-......++..+..|+..+...--.+-++..++..|..||.=.
T Consensus 23 ~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333333344444444444444444444444556667777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 002902 507 TRDLDFERRRLKA 519 (868)
Q Consensus 507 ~reLE~Ek~rLq~ 519 (868)
++-+++|...|+.
T Consensus 103 Kk~heeEl~eLq~ 115 (119)
T 3ol1_A 103 KKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
No 64
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.06 E-value=1.2 Score=43.56 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq 358 (868)
++.++.-...++..++..+.+|...++.+...++.|.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE 62 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLE 62 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 5555655666666666666666666555555544443
No 65
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=95.98 E-value=0.012 Score=48.78 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 463 SWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRL 517 (868)
Q Consensus 463 ~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rL 517 (868)
.++..+..++.++..++.++.....+|+++++.+-+|+.||..|++.||++..||
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgEe~rl 58 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEESRI 58 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCcccc
Confidence 5678889999999999999999999999999999999999999999999887665
No 66
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.42 E-value=0.18 Score=44.99 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
+.++.++..++..++..+..+.++.....+|..+.++|..++..++..+..|.+.+..|+..|.++...|+
T Consensus 17 ~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677777888888888888888999999999999999999999999999998888888888887765
No 67
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=95.28 E-value=3.8 Score=43.63 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002902 298 LKVLRDM 304 (868)
Q Consensus 298 LeELq~k 304 (868)
+++|+.+
T Consensus 90 ~eeLr~~ 96 (273)
T 3s84_A 90 ADSLQAS 96 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.22 E-value=0.32 Score=56.45 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 317 ~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
+...+++.....+...+......+.+..++++.++.++.++++.+++.+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhh
Confidence 3333333344444444444444444444444444455555555444433
No 69
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.20 E-value=0.68 Score=43.36 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 319 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 319 k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
...+++++..|...++.+.-...+|+..+..|+.+|.=|++..++|.
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl 110 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEI 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666655555555444
No 70
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.09 E-value=0.4 Score=43.36 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=53.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 423 SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (868)
Q Consensus 423 r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~ 486 (868)
...++.|+.++..+...+...+.....|...+.+++.....+......++.++..|...||.+-
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888888889889999999998888888888888888888888774
No 71
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.97 E-value=2.9 Score=40.83 Aligned_cols=45 Identities=22% Similarity=0.419 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 442 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (868)
Q Consensus 442 ~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~ 486 (868)
..+.....|...+.+++.....+......++.++..|...||.+-
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA 99 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 99 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666666666666666553
No 72
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.93 E-value=1.9 Score=39.95 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 374 NAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQ 453 (868)
Q Consensus 374 e~~~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~q 453 (868)
++..+|+..+.++..++..|+.++.. ...+.-..+..|+.....++..-+.|+..+..+.....++|+..|..-..
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~----~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~S 78 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEH----QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVS 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhh
Confidence 44566777777788888888888773 22222223344443333444444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 454 VCKEQNVSASWKKRVEELENEIK 476 (868)
Q Consensus 454 LeEEk~~~~~lqkel~elE~eIr 476 (868)
|++...++..+-.+..-|+.++.
T Consensus 79 LeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 79 LEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444444444444333
No 73
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.74 E-value=3.5 Score=40.41 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=67.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~EL 503 (868)
.+|+....+++.....+..|+...+.+...|......-.+...+-..++.+|+.|...|......++.+...+..|++.|
T Consensus 28 ~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i 107 (155)
T 2efr_A 28 KLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555556666666666666666666666777788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 504 LAATRDLDFERRRLK 518 (868)
Q Consensus 504 eka~reLE~Ek~rLq 518 (868)
..+-..|..++..+.
T Consensus 108 d~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 108 DDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777766543
No 74
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=94.09 E-value=1.8 Score=39.07 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~k 321 (868)
+++..|+.++..|..+-..+..++..+..+ ...+...+ ..++.+...+...-...-+..+........
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke-----------~~~l~~el-~~le~E~~~L~~eE~~~w~eyn~~~~ql~e 71 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKN-----------RKVVAENL-EKVQAEAERLDQEEAQYQREYSEFKRQQLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 667777788777777777777776666555 33333333 334444444444444555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEAN 344 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~ 344 (868)
++.++..++.++.....++..|.
T Consensus 72 ~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 72 LDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666666555554
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.94 E-value=0.38 Score=55.83 Aligned_cols=7 Identities=43% Similarity=0.373 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002902 449 LLETQVC 455 (868)
Q Consensus 449 ~LE~qLe 455 (868)
.++++++
T Consensus 548 ~le~~~~ 554 (597)
T 3oja_B 548 ALEKQLD 554 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333333
No 76
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.82 E-value=1 Score=42.64 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLE 323 (868)
+..+...+..|+.+++........|+..+.....+|..++.++...+ ..++.+|..++..+...-+...++...|..|+
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i-~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKL-AELEEALQKAKQDMARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444455555555555555555555555 34555555555555555555555555555555
Q ss_pred HHHHHH
Q 002902 324 HEMEDL 329 (868)
Q Consensus 324 sEl~EL 329 (868)
.+|..+
T Consensus 117 ~EIatY 122 (129)
T 3tnu_B 117 VEIATY 122 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.54 E-value=0.47 Score=42.63 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~ 320 (868)
|++||.|+++|..|+.++..+... ....+... ++..|.+|+..++........+...+.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~------~~~~~~~~---------------ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQ------GKSRLGDL---------------YEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------cCCCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998887665432 11233334 444444444445555555555555555
Q ss_pred HHHHHHHHHHH
Q 002902 321 EQKHEMEDLND 331 (868)
Q Consensus 321 kLEsEl~EL~~ 331 (868)
.|..++.++..
T Consensus 81 nl~~~~~~~k~ 91 (93)
T 3s4r_A 81 NLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 78
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.53 E-value=1 Score=42.72 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 246 SLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHE 325 (868)
Q Consensus 246 ~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsE 325 (868)
.+...+..|+.+++........|+..+.....+|..++.++...+ ..++.+|..++..+...-+...++...|..|+.+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i-~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMI-GSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444555555555555555555 3455555555555555555555555555555555
Q ss_pred HHHHH
Q 002902 326 MEDLN 330 (868)
Q Consensus 326 l~EL~ 330 (868)
|..+.
T Consensus 121 IatYR 125 (131)
T 3tnu_A 121 IATYR 125 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 79
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.49 E-value=3.1 Score=37.63 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 435 ~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
.+...+..++.+...++..+...+.++..++..++.++.++..+...|+.......++...+.+|.+
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333444444444444444443333434444443333
No 80
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.36 E-value=0.28 Score=46.93 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR-LSASMQSCTEANEIMKSQKVTIDELKTQLDEE 364 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~q-Le~~e~~~~eL~k~l~kLe~qI~ELq~qLEEE 364 (868)
+.+...+..|...+.+....+..+...+.+++.++++|.+. +++++..++.+......++..+..|+.+|.+-
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888889999999999999999999999999988 68888888888887778888878888777654
No 81
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.25 E-value=2 Score=41.76 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 287 KESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 287 ~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
.+.....++.||.+.....++..+...++.+++.-++.++.....++..++..+.+|...+..+...|+.|...-
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 333447899999999999999999999999999999999999999999999999999999998888887766543
No 82
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=92.56 E-value=7.1 Score=36.89 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSG 498 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~ 498 (868)
+|..+++.++..+........-.-++|.+++.++.++++.-...+++|..|+.++....+..+.+...+..
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44444444443333333344445567888999999999999999999999998888888777766665554
No 83
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.49 E-value=1.9 Score=41.89 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILA 505 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELek 505 (868)
+..++.+|+.+...+...++.++.|+.+-. ....++..++.++.+.+.-.+.-...|+++..++.-++.+|+.
T Consensus 19 l~~a~~kLeeaek~adE~eR~~k~lE~r~~-------~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLer 91 (147)
T 2b9c_A 19 LATALQKLEEAEKAADESERGMKVIESRAQ-------KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 91 (147)
T ss_dssp TTHHHHHHHHHHHHHHHHTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544322 2344556666666666666666667777777777777777776
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh
Q 002902 506 ATRDLDFERRR---LKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKT 558 (868)
Q Consensus 506 a~reLE~Ek~r---Lq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~e 558 (868)
+...++.=..+ |..++-.+-..++.+...-+++.+-...+.. +|+.|...
T Consensus 92 aeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee---~I~~L~~k 144 (147)
T 2b9c_A 92 AEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLEN---EVARLKKL 144 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH---HHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH---HHHHHHHH
Confidence 65555544443 4433444444566666566666666666666 55555443
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.21 E-value=2.4 Score=48.54 Aligned_cols=55 Identities=27% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCccccCCCCCCCCCCCCCcCCCCCCCCcccccccCCCCCCCcccccCCCCcCCCCC
Q 002902 635 GDRTCKGGFGSDIDGVGTGPILEGDPIGTEQVHETESPGIDGEQNIDLNKPETLAGE 691 (868)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (868)
++.+-.|.|++|.-|-|.+...-.|-=.+|.|.-.-|||..++. +--|...-.||
T Consensus 366 ~~ss~~g~~rp~s~g~g~~rp~npdwg~f~e~~gs~sp~t~~e~--ht~klvtskg~ 420 (562)
T 3ghg_A 366 QWHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREY--HTEKLVTSKGD 420 (562)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCcceecccCCcCCCccccc--cccceeecCCC
Confidence 44455688888888888765555555566888888888777653 44555544554
No 85
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.15 E-value=21 Score=42.03 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 430 KLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAK 495 (868)
Q Consensus 430 ~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~ 495 (868)
....+.....+-..++....-++.+++++.+...++++.+.++...++++.-++...+.|++-..+
T Consensus 465 l~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~q 530 (592)
T 1f5n_A 465 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 530 (592)
T ss_dssp HHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444454555555566778888899888888888888888888888887777666644333
No 86
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.13 E-value=6 Score=35.74 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 254 LRKQLESQVLEIDKL 268 (868)
Q Consensus 254 Lr~qLEe~~~ei~~L 268 (868)
|+.+.+.+......+
T Consensus 14 lk~e~e~a~d~ae~~ 28 (101)
T 3u59_A 14 LKLDKENAIDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.12 E-value=7.4 Score=36.05 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 328 DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 328 EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
.|...+-.++..++++++..+-....+.+++..|..
T Consensus 53 ~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 53 QLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333334444444444444444444444444433
No 88
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.58 E-value=2 Score=37.94 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELe 504 (868)
+|+.+++.+......++-.+..+...+++.+.++..-......++..+..|+..+...--.+-++..++.+|..||.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444455554444445556666666666666665555666666665555553
No 89
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=91.47 E-value=2.5 Score=37.12 Aligned_cols=73 Identities=10% Similarity=0.184 Sum_probs=46.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 263 LEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 336 (868)
Q Consensus 263 ~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~ 336 (868)
.....|+..+.....+|...+.++...+ ..++.+|..++..++..-+...++...|..|+.++.....-|+..
T Consensus 8 ~~~~sLE~~l~e~e~~~~~~~~~~q~~i-~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEGE 80 (84)
T 1gk4_A 8 GTNESLERQMREMEENFAVEAANYQDTI-GRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGE 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 3344455555555666666666666666 457777777777777766777777777777777776666655543
No 90
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.23 E-value=2.8 Score=38.58 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002902 495 KVSGLELDILAATRDLDFERR 515 (868)
Q Consensus 495 ~i~~Le~ELeka~reLE~Ek~ 515 (868)
.|.-|...+.-|+.+...|+.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERa 83 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERH 83 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchh
Confidence 444455555555555555543
No 91
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.67 E-value=5.4 Score=36.72 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=51.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDI 503 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~EL 503 (868)
.++..|+.+|..+...+......+.+|...+.. .......+.-|++++.=.+.....++.+++.+...+..|..+|
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 345566666665555555544444444443333 1112236677777888888888888888888877777777777
Q ss_pred HHHHHHH
Q 002902 504 LAATRDL 510 (868)
Q Consensus 504 eka~reL 510 (868)
+.+++++
T Consensus 100 ~~Lq~q~ 106 (110)
T 2v4h_A 100 EQLQREF 106 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.64 E-value=4.6 Score=36.18 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 250 SNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDL 329 (868)
Q Consensus 250 En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL 329 (868)
++..|..++..++.++..|+.+++. |+.++..++.+ ....-....+.++.+|
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~-------------------Le~~i~~l~~~---------~~~~~~~~ye~~i~~L 61 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKI-------------------LLAELEQLKGQ---------GKSRLGDLYEEEMREL 61 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHhhc---------cCCCcHHHHHHHHHHH
Confidence 3455666777777776666666422 33333333221 0122334467777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002902 330 NDRLSASMQSCTEANEIMKSQKVTIDELKTQ 360 (868)
Q Consensus 330 ~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~q 360 (868)
..++..+....+.+.-++..+...+.+++..
T Consensus 62 r~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 62 RRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888777777777777777777766666654
No 93
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=90.26 E-value=21 Score=37.87 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 002902 321 EQKHEMEDLNDRL 333 (868)
Q Consensus 321 kLEsEl~EL~~qL 333 (868)
++...+++|..+|
T Consensus 85 ~l~~~~eeLr~~L 97 (273)
T 3s84_A 85 VLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 3333444444443
No 94
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.18 E-value=13 Score=35.23 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 517 LKAARERIMLRETQLRA 533 (868)
Q Consensus 517 Lq~erErLq~reqQlka 533 (868)
|+-+.+.+..+++++++
T Consensus 145 LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 145 LSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HhhhhHhHHHHHHHHHH
Confidence 44444455555555543
No 95
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.78 E-value=3.3 Score=39.77 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 303 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 303 ~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
...+.++..+.++...+..|..++..+..+++.+...+.++.+.+..|+.++..|+..|.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444555555555555555555555544443
No 96
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=89.76 E-value=2 Score=37.98 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 268 LRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 337 (868)
Q Consensus 268 Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e 337 (868)
++..+..+..+|..++.++...+ ..++.+|..++..++..-+...++...|..|+.++.....-|+..+
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i-~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEGEe 83 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLL-AEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 34444444445666666666666 4566667777766666666666777777777777766666665443
No 97
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.73 E-value=6.2 Score=36.59 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
+.+..|..+...|+.+|+........|...
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666665554444444
No 98
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.33 E-value=2.6 Score=36.71 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kL 350 (868)
.+..+.+....+++.++..+..+.....+++.++..|..++..++..+..+...+...
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555556666666555555555555555444444333
No 99
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.33 E-value=7.3 Score=43.82 Aligned_cols=7 Identities=0% Similarity=-0.301 Sum_probs=2.7
Q ss_pred CCEEEec
Q 002902 179 GDIISFA 185 (868)
Q Consensus 179 GD~I~~~ 185 (868)
|..+.++
T Consensus 253 ~~~~~~~ 259 (471)
T 3mq9_A 253 KVNYGVT 259 (471)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 3334433
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.07 E-value=13 Score=34.52 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (868)
Q Consensus 317 ~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~ 352 (868)
.++.+|+.+|..|+..|..+...+..|.+....+..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 345556666666665555555555555554444433
No 101
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=88.54 E-value=1.1 Score=52.67 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 002902 543 VLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 543 e~~k~~~~qLr~LQ~eLE~ 561 (868)
++.+.++.+|..|..+|+.
T Consensus 511 ekn~~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 511 ERNERLHNQLKALKQDLAR 529 (575)
T ss_dssp HHCHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3455566688888888876
No 102
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=88.06 E-value=11 Score=34.82 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAARE 490 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~e 490 (868)
.+.+.|+..+..++..+..+.+.+..|+.. |..+.....+++..|..++..-+..|..++..+.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444444444444 4444444455555555555555544444444444
No 103
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.94 E-value=6.9 Score=34.65 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS 334 (868)
Q Consensus 283 l~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe 334 (868)
+.++.... .++..+..+|...+.+++..+..+..++..|+..+.+++.+|+
T Consensus 37 rkele~~~-~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 37 KKELEEQN-VTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444 3455555555555777888888888888888888888877764
No 104
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.19 E-value=5.7 Score=35.67 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002902 456 KEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAATRDLDFERR---RLKAARERIMLRETQLR 532 (868)
Q Consensus 456 EEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~---rLq~erErLq~reqQlk 532 (868)
..+..+..+...+...+..|.+|++++...+.. .+.+.-|...+.-|+.+...|+. ++..+.+.|...+..+.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~----~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV----METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444555555555555555555444432 24556666777777777777765 35555556665555555
Q ss_pred Hhhch
Q 002902 533 AFYST 537 (868)
Q Consensus 533 ae~ek 537 (868)
.++.+
T Consensus 82 ~q~~~ 86 (94)
T 3jsv_C 82 REFNK 86 (94)
T ss_dssp HTTC-
T ss_pred HHHHH
Confidence 55443
No 105
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=87.11 E-value=47 Score=37.93 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLET 452 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~ 452 (868)
+..++..|+.....+.++...+++|..
T Consensus 351 ~~~~~~~~~~~n~~~~~~~~~~~~f~~ 377 (551)
T 2b5u_A 351 YNSRKSELDAANKTLADAIAEIKQFNR 377 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhhHHHHHhhhhHHHHHHHhhhhhhh
Confidence 445556666666667777766767663
No 106
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.10 E-value=1.9 Score=41.26 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~ 486 (868)
++.++.++..+...+...+.....|...+.+++.....+......++.++..|...||.+-
T Consensus 27 le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEA 87 (135)
T 2e7s_A 27 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 87 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666677777777888888887778888888888888877777763
No 107
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.41 E-value=12 Score=32.32 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (868)
Q Consensus 318 ~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~ 348 (868)
+...++..+.+.+.+....+..+..|++.++
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq 51 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLK 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 108
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=85.24 E-value=13 Score=32.28 Aligned_cols=65 Identities=5% Similarity=0.094 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (868)
Q Consensus 283 l~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l 347 (868)
++...+++++++...+...++.++.+.+.-.+|..-..+|+.-+..|...-..+...+.-+.+..
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888889888888888888888887766666655555555444444433
No 109
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=85.19 E-value=1 Score=52.87 Aligned_cols=9 Identities=0% Similarity=-0.031 Sum_probs=4.2
Q ss_pred CCEEEeccC
Q 002902 179 GDIISFAAP 187 (868)
Q Consensus 179 GD~I~~~~~ 187 (868)
|..|.||+.
T Consensus 213 g~~l~LGV~ 221 (575)
T 2i1j_A 213 NTELWLGVD 221 (575)
T ss_dssp CCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 444555543
No 110
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.94 E-value=10 Score=33.45 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTID 355 (868)
Q Consensus 318 ~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ 355 (868)
....+++++..|..-+..+.-...+|+.++..|+.+|.
T Consensus 43 ~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 43 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555444
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.88 E-value=17 Score=40.91 Aligned_cols=12 Identities=0% Similarity=0.138 Sum_probs=5.4
Q ss_pred CCccccccccCC
Q 002902 21 PSPKEKVNVNAS 32 (868)
Q Consensus 21 ~~~~~~~~~~~~ 32 (868)
++-...+++...
T Consensus 33 ~~~L~~L~Ls~n 44 (487)
T 3oja_A 33 AWNVKELDLSGN 44 (487)
T ss_dssp GGGCCEEECCSS
T ss_pred CCCccEEEeeCC
Confidence 334445555443
No 112
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.73 E-value=19 Score=40.34 Aligned_cols=24 Identities=46% Similarity=0.673 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 465 KKRVEELENEIKKLREELESEKAA 488 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~~e 488 (868)
++++.+++.+|..|..+|+....+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544433
No 113
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=84.70 E-value=8.8 Score=33.48 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (868)
Q Consensus 299 eELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq 358 (868)
-+||..|+..-+...-+...+.+....+-.+..+|.+++..+.+|..++..++.++.+|+
T Consensus 13 leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 13 RELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666777777777777777777777777777777777777777766654
No 114
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.69 E-value=22 Score=34.05 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTID 355 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ 355 (868)
...|...+++..+.+..+-..+..++..++.+...+..+...+..|++++.+|+..+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444455555555555555555544443
No 115
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=84.38 E-value=31 Score=33.32 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhHH
Q 002902 548 QQEQLKAMQKTLE 560 (868)
Q Consensus 548 ~~~qLr~LQ~eLE 560 (868)
....+-.+|.+|+
T Consensus 143 ~~~k~~~~e~~~~ 155 (155)
T 2oto_A 143 DYNRANVLEKELE 155 (155)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHhhhcC
Confidence 3345555555553
No 116
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.62 E-value=16 Score=41.12 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002902 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (868)
Q Consensus 318 ~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEE 363 (868)
..++++.++..+.+.++.....+..+.++..+++..+.++..++++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 3333444444444444444444444444444444444444444443
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=81.99 E-value=4.9 Score=36.55 Aligned_cols=58 Identities=22% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 474 EIKKLREELESEKAAREVAWAKVSGLELDILA------------------------ATRDLDFERRRLKAARERIMLRET 529 (868)
Q Consensus 474 eIreLeeELe~e~~e~eel~d~i~~Le~ELek------------------------a~reLE~Ek~rLq~erErLq~req 529 (868)
++..|+.+++.+..+.+.+.+.+..|+.+|+. +..+...+...|+.+.++|..+++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777777777777777777754 555566666677777777776654
Q ss_pred HH
Q 002902 530 QL 531 (868)
Q Consensus 530 Ql 531 (868)
.+
T Consensus 93 ~l 94 (100)
T 1go4_E 93 AM 94 (100)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 118
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.91 E-value=9.7 Score=33.19 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELE 483 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe 483 (868)
.++|-.++..++-.+.++|..+-+-+++|.--+.-++.++..+...+++|+.|..+|-
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4578888888888889999988888888888888888888888888888888887763
No 119
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.77 E-value=29 Score=33.73 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 458 QNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDILAA 506 (868)
Q Consensus 458 k~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELeka 506 (868)
...+..++.++..++.+|..+..+|..-....+.+.+.+.+|..++..+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666677777777666666666666666666666655443
No 120
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.58 E-value=36 Score=31.60 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 002902 448 RLLETQVCKEQNV 460 (868)
Q Consensus 448 r~LE~qLeEEk~~ 460 (868)
..|...|..+++.
T Consensus 56 ~tL~~SL~~ekaq 68 (121)
T 3mq7_A 56 MALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 121
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=80.24 E-value=68 Score=36.57 Aligned_cols=6 Identities=67% Similarity=1.293 Sum_probs=3.0
Q ss_pred cCCCCC
Q 002902 640 KGGFGS 645 (868)
Q Consensus 640 ~~~~~~ 645 (868)
+.|||.
T Consensus 275 k~GFG~ 280 (464)
T 1m1j_B 275 KRGFGN 280 (464)
T ss_dssp HHCEEC
T ss_pred HHHhCC
Confidence 445554
No 122
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.96 E-value=63 Score=35.75 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 002902 381 AAVQKSQL 388 (868)
Q Consensus 381 ~qL~kl~~ 388 (868)
..|.+|+.
T Consensus 67 ~rIe~L~~ 74 (390)
T 1deq_A 67 SRINKLRD 74 (390)
T ss_pred HHHHHHHH
Confidence 33443333
No 123
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.60 E-value=14 Score=34.57 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDL 329 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL 329 (868)
.+|..++..|++.|++....+..+......|..++..+
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666665555444444444444444433
No 124
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=78.24 E-value=9.2 Score=34.85 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 237 GPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEIS 316 (868)
Q Consensus 237 g~vsid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~ 316 (868)
.++++..+..|+.++...+.||-.++.+++.....+ +.-=.+..+..-.+-...+..++.|+.+++++++++.
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~-------E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAV-------EVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999999999988888865555543 3333444444434445556777777777777777655
Q ss_pred H
Q 002902 317 R 317 (868)
Q Consensus 317 ~ 317 (868)
+
T Consensus 103 a 103 (107)
T 2k48_A 103 A 103 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.07 E-value=20 Score=32.19 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (868)
Q Consensus 425 elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELe 504 (868)
+++.|+..|......+......+.+|...+..-+ .....+.-|.+++.-.+.....++.+++.+...+..|..++.
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~----~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK----IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555555555555444444444333222222 222566677777778888888888888877777777777666
Q ss_pred HHHHHH
Q 002902 505 AATRDL 510 (868)
Q Consensus 505 ka~reL 510 (868)
.+++++
T Consensus 79 ~lq~q~ 84 (94)
T 3jsv_C 79 QLQREF 84 (94)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 665543
No 126
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=77.51 E-value=5 Score=36.15 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 276 VERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (868)
Q Consensus 276 ~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qL 333 (868)
..+|..++......+ ..++.+|..++..++..-+...++...|..|+.+|.....-|
T Consensus 32 E~~~~~e~~~~q~~i-~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 32 EDLLAKEKDNSRRML-TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555 446666666666666665666666666666666666555444
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=76.73 E-value=42 Score=30.16 Aligned_cols=13 Identities=31% Similarity=0.274 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 002902 440 LVTSDNKVRLLET 452 (868)
Q Consensus 440 ~~~LEkkqr~LE~ 452 (868)
...++.++..+.+
T Consensus 26 ~~~l~~~i~~l~~ 38 (112)
T 1l8d_A 26 IGELKNKIGDLKT 38 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 128
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=72.95 E-value=89 Score=35.73 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002902 254 LRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKE 288 (868)
Q Consensus 254 Lr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E 288 (868)
.+..|.....++.++...+..++..|++.+.+...
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666666666655555555555554443
No 129
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=70.46 E-value=48 Score=29.87 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002902 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQ 360 (868)
Q Consensus 304 kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~q 360 (868)
.+.+.++.+.++...+.+|+-++..+-. .....+...++..+..+..|+++
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~------s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAPL------TFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555444421 22334444455555555554443
No 130
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=69.90 E-value=13 Score=32.29 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC 340 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~ 340 (868)
++..|.+|..++.=.+..+.+++..+.+.+.++..|.++|..+...+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445455555555555555555555444444444444444433
No 131
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=69.86 E-value=59 Score=28.80 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 297 QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
.|..++..|+-..-...++..++.+|++- |..++.+.+.-++.+..++..|.+.-+.|+.++
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~-------l~~l~~e~~~R~~~i~el~akidd~Lk~l~~Ek 66 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSL-------LASLESEGAEREKRLRELEAKLDETLKNLELEK 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 34455555555555555555555555444 344444455555556666666677666666655
No 132
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=69.18 E-value=35 Score=29.11 Aligned_cols=65 Identities=23% Similarity=0.150 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHH
Q 002902 477 KLREELESEKAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFY-STTEEISVL 544 (868)
Q Consensus 477 eLeeELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erErLq~reqQlkae~-ek~EEi~e~ 544 (868)
.|...|..+..+++++..++..+..++.+++ +.+...++...++....++.+|.+- ++..||-++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~---eee~~~~~~~lek~L~~E~~LK~QAVNKLAEIMNR 68 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK---EEEISNLKAAFEKNINTERTLKTQAVNKLAEIMNR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666677777777777777777655 4444455555666666677776554 777777744
No 133
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.55 E-value=61 Score=31.52 Aligned_cols=13 Identities=15% Similarity=-0.079 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 002902 467 RVEELENEIKKLR 479 (868)
Q Consensus 467 el~elE~eIreLe 479 (868)
++..+..++..++
T Consensus 104 El~aLqlq~n~lE 116 (152)
T 3a7p_A 104 ALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 134
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.86 E-value=64 Score=29.01 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002902 377 ADLKAAVQKSQLETQEKLKRL 397 (868)
Q Consensus 377 ~eLq~qL~kl~~el~eerkk~ 397 (868)
..|+.++..+..++.+++..+
T Consensus 87 ~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 87 NALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433
No 135
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=67.70 E-value=1.4e+02 Score=32.16 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLE 264 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~e 264 (868)
+++-.|..-+..+...+......
T Consensus 34 DEig~l~~~~n~~~~~l~~~i~~ 56 (341)
T 3zx6_A 34 DEIGILAKSIERLRRSLMRTVGD 56 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444433
No 136
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=67.24 E-value=1.7e+02 Score=33.12 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHH
Q 002902 548 QQEQLKAMQKTLED 561 (868)
Q Consensus 548 ~~~qLr~LQ~eLE~ 561 (868)
+|..++.|+=.||.
T Consensus 233 al~dm~Qm~mvLE~ 246 (491)
T 1m1j_A 233 AFNNIKQMQVVLER 246 (491)
T ss_dssp --------------
T ss_pred HHhhhhheEEEEec
Confidence 34455666666666
No 137
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.21 E-value=59 Score=27.79 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 499 LELDILAATRDLDFERR 515 (868)
Q Consensus 499 Le~ELeka~reLE~Ek~ 515 (868)
+..++..+...|+.-..
T Consensus 40 ~~~Elk~~~e~Ld~KI~ 56 (72)
T 3cve_A 40 FRSNLKTLLEILDGKIF 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 33333333333333333
No 138
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.14 E-value=15 Score=31.81 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
|+..+.+|+.++.-.+..+.+|+..+.+++.+|..|++++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555444444
No 139
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=65.74 E-value=97 Score=29.72 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 247 LQRSNTELRKQLESQ 261 (868)
Q Consensus 247 LE~En~eLr~qLEe~ 261 (868)
|..+|..|+.+.+.+
T Consensus 27 l~~eN~~Lk~e~e~l 41 (155)
T 2oto_A 27 LRHENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 140
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=65.72 E-value=1.2e+02 Score=34.64 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 506 ATRDLDFERRRLKAARE 522 (868)
Q Consensus 506 a~reLE~Ek~rLq~erE 522 (868)
++..|+..+.+++..++
T Consensus 60 aka~Ye~~l~kY~~dla 76 (497)
T 3iox_A 60 AKADYEAKLAKYQADLA 76 (497)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 141
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=64.91 E-value=54 Score=29.86 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 439 RLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKA 487 (868)
Q Consensus 439 ~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~ 487 (868)
.++.|++.+..|-=+++-.+..+......+..+.++.++...+++.++.
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr 65 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKH 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333333333333333333333333333
No 142
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=64.24 E-value=2.4e+02 Score=33.81 Aligned_cols=19 Identities=0% Similarity=0.146 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 002902 543 VLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 543 e~~k~~~~qLr~LQ~eLE~ 561 (868)
..++..+..|..+...+..
T Consensus 645 ~~~~~~~~el~~~~~~i~~ 663 (863)
T 1sjj_A 645 NHLRQYEKSIVNYKPKIDQ 663 (863)
T ss_dssp HHHHHHHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444443
No 143
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.80 E-value=52 Score=30.75 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhh
Q 002902 522 ERIMLRETQLRAFY 535 (868)
Q Consensus 522 ErLq~reqQlkae~ 535 (868)
..|..++.+|.+++
T Consensus 43 ~ql~~~i~~Le~eL 56 (120)
T 3i00_A 43 LQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 144
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=63.37 E-value=80 Score=27.91 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002902 380 KAAVQKSQLETQEKLK 395 (868)
Q Consensus 380 q~qL~kl~~el~eerk 395 (868)
+.++..++.++.+++.
T Consensus 85 e~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 85 ERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 145
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.24 E-value=39 Score=29.40 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002902 497 SGLELDILAATRDLDFERRRL 517 (868)
Q Consensus 497 ~~Le~ELeka~reLE~Ek~rL 517 (868)
..+..++..+...|+.-..+|
T Consensus 44 ~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 44 ERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 333444444444444444433
No 146
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.11 E-value=70 Score=28.00 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKV 496 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i 496 (868)
.++..|++.+.-.......++..+..++.+|..|+..++....+++.+...-
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444433333333444555556666666666655555554444444433
No 147
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=62.75 E-value=86 Score=28.10 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 436 TRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (868)
Q Consensus 436 ~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~ 486 (868)
..+++..--.-.-.|...|..+++...+-++++.+++.+|..|...|....
T Consensus 37 ~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 37 AETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445556666666777666666677777777777766665554
No 148
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=62.15 E-value=1.4e+02 Score=30.64 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQ 261 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~ 261 (868)
+..+......|+.++.-.
T Consensus 50 ~~~l~~~~~~l~~~l~p~ 67 (243)
T 2a01_A 50 WDSVTSTFSKLREQLGPV 67 (243)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 444444444444444333
No 149
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=62.15 E-value=27 Score=29.41 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 249 RSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEI 315 (868)
Q Consensus 249 ~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el 315 (868)
++|.+|...+.+...+|.+|.-=+-+++.+ +....+. .|+++.++.-.+.+...+++.+.+.
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~K----LiKYtel-nKKLe~~~~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSK----LEKYVDI-TKKLEDQNLNLQIKISDLEKKLSDA 64 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHhhhhhHHHHhhcccc
Confidence 456667777777777766665555444444 2222222 2455665555555555555554443
No 150
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=61.02 E-value=99 Score=28.22 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQ 458 (868)
Q Consensus 428 dL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk 458 (868)
+....|...+....++++.+++|+.+|.+.+
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544
No 151
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=60.97 E-value=1.1e+02 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 002902 506 ATRDLDFERRRLKAARERIMLRETQLRAFYSTTEEIS 542 (868)
Q Consensus 506 a~reLE~Ek~rLq~erErLq~reqQlkae~ek~EEi~ 542 (868)
++.+|....+.++..+-.|+.+++....=++-|+.|.
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443344444333332334444443
No 152
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.49 E-value=2.6e+02 Score=32.78 Aligned_cols=51 Identities=14% Similarity=0.374 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 433 LDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (868)
Q Consensus 433 LE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~ 486 (868)
++..+.....+++.++.|+.+..+.+..+ +.+-+..+..+++|.+.|+.++
T Consensus 489 ~~~~~~~~e~~~~~~~~l~~~~~~~~~~~---~~~~~~~~e~~~ql~~kme~~~ 539 (592)
T 1f5n_A 489 IEVERVKAESAQASAKMLHEMQRKNEQMM---EQKERSYQEHLKQLTEKMENDR 539 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444333333333 3333444555555555555443
No 153
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=59.70 E-value=49 Score=28.71 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISR 317 (868)
Q Consensus 241 id~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~ 317 (868)
+..+..|+.++...+.||-..+.+++..... |+.-=.+..+..-.+-...+.-|+.|+.++++.++++..
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~-------~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERA-------VELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888888888887777775554444 333333444444334445566677777777777766544
No 154
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=59.70 E-value=81 Score=26.90 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh-chHHHHHHH
Q 002902 480 EELESEKAAREVAWAKVSGLELDILAATRDLDFERR--RLKAARERIMLRETQLRAFY-STTEEISVL 544 (868)
Q Consensus 480 eELe~e~~e~eel~d~i~~Le~ELeka~reLE~Ek~--rLq~erErLq~reqQlkae~-ek~EEi~e~ 544 (868)
..|..+..+++++..++..++.++.+++ +.+.. .++...++....++.+|.+- ++..||-++
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~---eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEIMNR 68 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLK---DEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555566666777777776666655 33322 45555566666666776554 777777643
No 155
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=57.86 E-value=60 Score=29.58 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 002902 298 LKVLRDMLDAK 308 (868)
Q Consensus 298 LeELq~kLeE~ 308 (868)
++-|+.+|++.
T Consensus 32 VdlLKD~LEe~ 42 (103)
T 4h22_A 32 VDTLKDMLLEL 42 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 156
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.80 E-value=1.8e+02 Score=32.62 Aligned_cols=7 Identities=57% Similarity=1.042 Sum_probs=4.2
Q ss_pred ccCCCCC
Q 002902 639 CKGGFGS 645 (868)
Q Consensus 639 ~~~~~~~ 645 (868)
-+.|||.
T Consensus 211 Yk~GFG~ 217 (409)
T 1m1j_C 211 YKEGFGH 217 (409)
T ss_dssp HHHCEEE
T ss_pred HHhhhCC
Confidence 4567765
No 157
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=57.57 E-value=97 Score=31.97 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 002902 426 VESLKLKLD 434 (868)
Q Consensus 426 lEdL~~eLE 434 (868)
+++++..+.
T Consensus 222 ~e~~~~~l~ 230 (243)
T 2a01_A 222 LESFKVSFL 230 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 158
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=57.36 E-value=55 Score=29.52 Aligned_cols=66 Identities=8% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKH-----EMEDLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~el~~~k~kLEs-----El~EL~~qLe~~e~~~~eL~k~l~kLe~qI~EL 357 (868)
++|...|.+|+..++...+.+.-+..-+.=+.. .-..+..+|.+....+..|...+.+++..+.++
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666555555555444443333322 112223344444444444444444444444443
No 159
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=55.49 E-value=46 Score=29.90 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISR 317 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~ 317 (868)
..+..|+.++...+.||-..+.++...... |+.-=.+..+..-.+-...+.-|+.++.++++.++++..
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~-------~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERA-------VELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888887777775554444 333333444444334445566677777777777766554
No 160
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=55.31 E-value=65 Score=29.12 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 297 QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
+|...+.+|...+..+.+-.-...++-.+-.++..+|...........+.+..++..|..|+.+|
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666666666655566666666677777887777777777777777777777777665
No 161
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=55.09 E-value=2.9e+02 Score=31.67 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 002902 270 NENRVVVERHEKEMKEMKES 289 (868)
Q Consensus 270 ~evk~i~er~E~El~El~E~ 289 (868)
...+.+..+|-..+.+...-
T Consensus 114 khn~~I~~k~g~~l~~v~~~ 133 (526)
T 3iyk_A 114 KYNDKIKEKFGKELEEVYNF 133 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444433
No 162
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.22 E-value=1e+02 Score=28.00 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLETQVCK 456 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~qLeE 456 (868)
+..|+.+++.++.....|.+++..|+.+|+.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555543
No 163
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.02 E-value=1.1e+02 Score=26.67 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 002902 321 EQKHEMEDLN 330 (868)
Q Consensus 321 kLEsEl~EL~ 330 (868)
+|..+.....
T Consensus 59 qLk~E~~~wq 68 (81)
T 2jee_A 59 HLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 164
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=53.78 E-value=48 Score=28.41 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 336 (868)
Q Consensus 283 l~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~ 336 (868)
+......+ ..++.+|..++..++..-+...++...|..|+.++.....-|+..
T Consensus 7 ~~~~~~~i-~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 7 RDTSRRLL-AEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344443 345555555555555555555666666666666666665555443
No 165
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=53.14 E-value=1.2e+02 Score=26.55 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 322 LEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
|-.++++|.-++.+++....+.++.++.-+.+|..|+.+|+
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555553
No 166
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.08 E-value=1.2e+02 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 464 WKKRVEELENEIKKLREELESE 485 (868)
Q Consensus 464 lqkel~elE~eIreLeeELe~e 485 (868)
+++++++.+.+.++|..+|+.+
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 167
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=51.38 E-value=62 Score=29.24 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (868)
Q Consensus 445 kkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~ 484 (868)
..+-.++.+|++.+....+.++.+.++++.|..|+.||..
T Consensus 57 AEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 57 AEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456788899999999999999999999999999988753
No 168
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.15 E-value=27 Score=28.03 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=26.0
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002902 230 IGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (868)
Q Consensus 230 lg~g~~~g~vsid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~e 271 (868)
||.+++.+ .++..|..++.+|+..++.+..++..++.+
T Consensus 11 LG~~~p~~----~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 11 LGAATPEN----PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp -----CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554 789999999998888888887777666655
No 169
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.52 E-value=36 Score=37.98 Aligned_cols=8 Identities=0% Similarity=-0.072 Sum_probs=3.8
Q ss_pred cccccCCC
Q 002902 570 VDIDLCVP 577 (868)
Q Consensus 570 ~~~dlnel 577 (868)
|..+|.||
T Consensus 197 YnE~i~DL 204 (403)
T 4etp_A 197 YNENIVDL 204 (403)
T ss_dssp ETTEEEET
T ss_pred ecceeeEc
Confidence 34455554
No 170
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.04 E-value=46 Score=33.43 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 309 QKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 309 ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
+.++..+-..+.+|..++..|+.+|+.....+..|.++++.++.++...+.++
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 33444455667777778888888888777777777777777776665444444
No 171
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.83 E-value=76 Score=27.68 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 430 KLKLDETRERLVTSDNKVRLLETQVCK 456 (868)
Q Consensus 430 ~~eLE~~ra~~~~LEkkqr~LE~qLeE 456 (868)
+++|+.+-..+..|+.++..|+.+|.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445556666666666666666666654
No 172
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.79 E-value=58 Score=26.04 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002902 326 MEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (868)
Q Consensus 326 l~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLE 362 (868)
+.+|..++..+..++..|...++....+|..|..+|+
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554443
No 173
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.60 E-value=65 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.450 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 310 KELAEISRISAEQKHEMEDLNDRLSA 335 (868)
Q Consensus 310 k~l~el~~~k~kLEsEl~EL~~qLe~ 335 (868)
+.+..+...+.+|+.++..|..+|..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555555555555555555543
No 174
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=46.85 E-value=4.5e+02 Score=31.50 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=5.3
Q ss_pred HHHHHHhhhHHH
Q 002902 550 EQLKAMQKTLED 561 (868)
Q Consensus 550 ~qLr~LQ~eLE~ 561 (868)
++++.++.+|..
T Consensus 645 ~~~~~~~~el~~ 656 (863)
T 1sjj_A 645 NHLRQYEKSIVN 656 (863)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 175
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=45.58 E-value=79 Score=25.16 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSAS 336 (868)
Q Consensus 293 klE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~ 336 (868)
++-.|++.|+..-.-+++++.+-...+.+|+.+..++..-+..+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 34455666666666666677777777777777666665554443
No 176
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=44.56 E-value=1.1e+02 Score=28.21 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISR 317 (868)
Q Consensus 243 ~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l~el~~ 317 (868)
.+..|+.++...+.||-..+.++...... |+.-=.+..+....+-...+.-|+.|+.++++.++++..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~-------~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQ-------YEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888777775555444 333333444444334445566777777777777776554
No 177
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.33 E-value=2.6e+02 Score=28.56 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~ek~l 312 (868)
.++..|..++..|+.++..+.....++..+..+.+.|..+++.++..-- ++.-+.+|-.=++.+++.+
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a---~e~~~~~LLpVlDnlerAl 126 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYR---AQSLASDLLPVLDNFERAL 126 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHH
Confidence 5678888999999999999988888888999999999888888877665 3333444444455555444
No 178
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.05 E-value=2.4e+02 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 002902 478 LREELESEKAAREVAWAKVSGLELDI-LAATRDLDFERRRL 517 (868)
Q Consensus 478 LeeELe~e~~e~eel~d~i~~Le~EL-eka~reLE~Ek~rL 517 (868)
++.+...+..++++....+..++.+| .+-..-|.+-+..+
T Consensus 151 l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KI 191 (213)
T 1ik9_A 151 LLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKI 191 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333333333333333333333333 23333333333333
No 179
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.91 E-value=1.8e+02 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 465 KKRVEELENEIKKLREELESEKAAREVAWAKVSGLEL 501 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ 501 (868)
+++...++++|.+|+.+|+.+..+++-+.+.+.....
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455667777777888888887777777666665444
No 180
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.83 E-value=1.6e+02 Score=25.44 Aligned_cols=45 Identities=31% Similarity=0.273 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 460 VSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELDIL 504 (868)
Q Consensus 460 ~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~ELe 504 (868)
....|-+++++|-.+..-|+.|+......+..+..++..|+.++.
T Consensus 31 vk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 31 VKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666777777777777777777777766666666665554
No 181
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.18 E-value=1.3e+02 Score=34.64 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 441 VTSDNKVRLLETQVCKEQNVSASWKKRV 468 (868)
Q Consensus 441 ~~LEkkqr~LE~qLeEEk~~~~~lqkel 468 (868)
.+++.+.+.+..+++..++..+.+.+++
T Consensus 73 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i 100 (501)
T 1wle_A 73 ISTWQELRQLREQIRSLEEEKEAVTEAV 100 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 182
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.06 E-value=1.6e+02 Score=33.73 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAE 314 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~e 314 (868)
+.+..++++|+++.....+++..
T Consensus 80 r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 80 RQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 183
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=42.77 E-value=1.3e+02 Score=25.36 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHHhhhccc
Q 002902 510 LDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDEENYENT 568 (868)
Q Consensus 510 LE~Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E~r~rs~ 568 (868)
|-....+-+.+++||.+-.-.+++-+.+|.+++..... ++..+|.+.-+.++-++.
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~---~~~~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLED---QNLNLQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHhhccc
Confidence 33344455666788888889999999999998865555 667777777666665553
No 184
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.51 E-value=1.7e+02 Score=25.39 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKL 478 (868)
Q Consensus 424 ~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreL 478 (868)
-.+...+.+|+.++..-.+|..-+..++..|.+.+...+.+.+.+.-+..+..+|
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554444444444444444444444333
No 185
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=42.06 E-value=2.9e+02 Score=28.03 Aligned_cols=62 Identities=11% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQ 309 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~kLeE~e 309 (868)
+..++.++..|..+.+.+....+.+..+ .++|...+.++...+-.++-.-|++-+.|+.+++
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~q----lE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGR----FEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555555555555544444444333 3444444555555555555555555555555554
No 186
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=41.56 E-value=4.9e+02 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhchHHHHH
Q 002902 521 RERIMLRETQLRAFYSTTEEIS 542 (868)
Q Consensus 521 rErLq~reqQlkae~ek~EEi~ 542 (868)
-+.+..-+-|.+.++.+.++..
T Consensus 141 ~e~lae~l~q~rqql~~l~~l~ 162 (596)
T 1bg1_A 141 ITSLAESQLQTRQQIKKLEELQ 162 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665555544
No 187
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=41.34 E-value=2e+02 Score=32.26 Aligned_cols=7 Identities=57% Similarity=1.042 Sum_probs=4.5
Q ss_pred ccCCCCC
Q 002902 639 CKGGFGS 645 (868)
Q Consensus 639 ~~~~~~~ 645 (868)
-|.|||.
T Consensus 211 Yk~GFG~ 217 (411)
T 3ghg_C 211 YKEGFGH 217 (411)
T ss_dssp HHHCEEE
T ss_pred HhcccCC
Confidence 4567774
No 188
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.92 E-value=1.4e+02 Score=24.09 Aligned_cols=30 Identities=7% Similarity=0.054 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 328 DLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (868)
Q Consensus 328 EL~~qLe~~e~~~~eL~k~l~kLe~qI~EL 357 (868)
+|..++..++..+..|...+..|..++..|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444333333
No 189
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.83 E-value=1.1e+02 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 328 DLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (868)
Q Consensus 328 EL~~qLe~~e~~~~eL~k~l~kLe~qI~EL 357 (868)
+|..++..++..+.+|...+..|+.++.-|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333333
No 190
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=40.02 E-value=1.8 Score=43.53 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=46.7
Q ss_pred CcCCeeeCCeeccCCCCccccCCCC-----EEEeccCCCCCceEEEEEeeccCCCCcc--------------hhHH-hhh
Q 002902 156 STNGTYVNCERFKKNSSEVNIDHGD-----IISFAAPPQHDLAFAFVFRDVSRSTPTM--------------EGAA-AKR 215 (868)
Q Consensus 156 StNGTfVNg~ki~k~~~~~~L~~GD-----~I~~~~~~~~~~~f~fvf~d~~~~~~~~--------------~g~~-~K~ 215 (868)
..+.|||+..+|.... .....+ .|.+ ++.+...|.|+|+++++++.+. +|+. .++
T Consensus 86 ~GRatflpl~~i~~~~---~~~~~g~~a~dlv~~--d~~~~~a~~~llg~tlvv~dl~~A~~l~~~~r~VTldGd~i~~~ 160 (189)
T 3nwc_A 86 LGRLTFLPLNKIKPKH---VDSSVGLPAVDVIEY--DQKIENAVKFALGDTVIVNSMEEARPHIGKVRMVTIEGELYERS 160 (189)
T ss_dssp CCCCCEEETTTCCCCC---CCSCSSEEGGGGEEC--CGGGHHHHHHHHTTEEEESCSGGGGGGTTTSEEEETTSCEECTT
T ss_pred CCceEEEECCcccccc---CCCCCCcEEeeeecc--CHHHHHHHHHHhCCEEEECCHHHHHHHhCCCeEEeCCCcEEECC
Confidence 3477888887775411 112222 3332 4555567888998888776553 4655 567
Q ss_pred hhhhhcccccccccccccCCC
Q 002902 216 KAEEYVSDNKRLKGIGICSPD 236 (868)
Q Consensus 216 ~a~~~~s~~~~~k~lg~g~~~ 236 (868)
|.++||+... +++.|+...
T Consensus 161 G~~tGG~~~~--~~~~f~~~~ 179 (189)
T 3nwc_A 161 GAITGGHFRA--RGLAVDTTK 179 (189)
T ss_dssp SCEECSCSSC--CCSEECSSC
T ss_pred EEEEeCCCCC--CCceechhh
Confidence 8888887554 577788754
No 191
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=39.97 E-value=1.1e+02 Score=34.90 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 441 VTSDNKVRLLETQVCKEQNVSASWKKRV 468 (868)
Q Consensus 441 ~~LEkkqr~LE~qLeEEk~~~~~lqkel 468 (868)
.+++.+.+.+...++..++....+.+++
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 192
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=39.04 E-value=4.8e+02 Score=29.64 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 506 ATRDLDFERRRLKAARERIMLRETQL 531 (868)
Q Consensus 506 a~reLE~Ek~rLq~erErLq~reqQl 531 (868)
.++.|......+...+..|...+.++
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333334444444444
No 193
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.99 E-value=33 Score=35.95 Aligned_cols=11 Identities=9% Similarity=0.480 Sum_probs=5.5
Q ss_pred CCCCccccccc
Q 002902 688 LAGETMQLEDE 698 (868)
Q Consensus 688 ~~~~~~~~~~~ 698 (868)
-.||++-+|--
T Consensus 215 r~GDsllvD~r 225 (251)
T 3m9b_A 215 RPGDSLLVDTK 225 (251)
T ss_dssp CTTCEEEECTT
T ss_pred CCCCEEEEeCC
Confidence 34555555543
No 194
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.51 E-value=94 Score=30.81 Aligned_cols=10 Identities=0% Similarity=0.082 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002902 499 LELDILAATR 508 (868)
Q Consensus 499 Le~ELeka~r 508 (868)
|-.+|.+++.
T Consensus 118 L~~Ei~~Lr~ 127 (175)
T 3lay_A 118 VAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 195
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.31 E-value=50 Score=28.02 Aligned_cols=10 Identities=30% Similarity=0.601 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002902 470 ELENEIKKLR 479 (868)
Q Consensus 470 elE~eIreLe 479 (868)
+|+.++..|+
T Consensus 33 ~LE~~v~~le 42 (70)
T 1gd2_E 33 ALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 196
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.90 E-value=1.1e+02 Score=34.53 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 443 SDNKVRLLETQVCKEQNVSASWK 465 (868)
Q Consensus 443 LEkkqr~LE~qLeEEk~~~~~lq 465 (868)
++.+.+++..+++..++..+.+.
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~s 58 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIA 58 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333333333333333
No 197
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.87 E-value=87 Score=28.12 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002902 305 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (868)
Q Consensus 305 LeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qL 361 (868)
+.+.++.+.++...+.+|+-++..+-. .....+...++..+..+..|++++
T Consensus 40 i~~ie~~l~EA~ell~qMelE~r~~p~------~~R~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 40 VANVEKQLEEARELLEQMDLEVREIPP------QSRGMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCT------TTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH------HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555444433321 122344444444444444444443
No 198
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.34 E-value=76 Score=36.39 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELA 313 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~ 313 (868)
|.+..++++|+++.....+++.
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~ 64 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIG 64 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555444444443
No 199
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.01 E-value=2.4e+02 Score=25.62 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002902 249 RSNTELRKQLESQVLE 264 (868)
Q Consensus 249 ~En~eLr~qLEe~~~e 264 (868)
+++.+..+++......
T Consensus 8 RK~aE~~KqL~~~~q~ 23 (107)
T 2no2_A 8 RKNAEVTKQVSMARQA 23 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4455555665555444
No 200
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.92 E-value=1.5e+02 Score=25.12 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 447 VRLLETQVCKEQNVSASWKKRVEELENEIKKLREEL 482 (868)
Q Consensus 447 qr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeEL 482 (868)
++.|+.++.+.......+..+...|..++..|..|+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333444444444444444443
No 201
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=36.07 E-value=1.4e+02 Score=31.82 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhh
Q 002902 385 KSQLETQEKLKRLS 398 (868)
Q Consensus 385 kl~~el~eerkk~e 398 (868)
.++.++...+..+.
T Consensus 140 ~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 140 QAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh
Confidence 33334444444454
No 202
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=36.03 E-value=3.6e+02 Score=27.36 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISR 317 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~ 317 (868)
++.++..+...+.+.+.++.....
T Consensus 82 He~rI~a~~a~l~dHE~RIt~~~~ 105 (242)
T 3c9i_A 82 HEARIKQLRIDVDDHESRITANTK 105 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhcccccHHHHhhhhhh
Confidence 344444455555555444443333
No 203
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=36.01 E-value=2.4e+02 Score=26.05 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 002902 444 DNKVRLLETQV 454 (868)
Q Consensus 444 Ekkqr~LE~qL 454 (868)
+.|+.+|.++|
T Consensus 75 q~KiaeLKrqL 85 (113)
T 4fi5_A 75 QAKIDELKRQL 85 (113)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 204
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=35.64 E-value=47 Score=31.29 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 467 RVEELENEIKKLREELE 483 (868)
Q Consensus 467 el~elE~eIreLeeELe 483 (868)
+...++.++..+..+++
T Consensus 31 k~~~~e~~~~~~~~Ele 47 (130)
T 3cl3_D 31 RARAASEQARQLESERE 47 (130)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33333333333333333
No 205
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=34.80 E-value=2.8e+02 Score=29.68 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 426 VESLKLKLDETRERLVTSDNKVRLLET 452 (868)
Q Consensus 426 lEdL~~eLE~~ra~~~~LEkkqr~LE~ 452 (868)
++.|+.+++...+....+.-.++++++
T Consensus 226 le~L~~ere~~~e~~a~~afd~qk~qR 252 (302)
T 3ibp_A 226 IESLHAEREVLSERFATLSFDVQKTQR 252 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455565555555554444433333333
No 206
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=34.34 E-value=3.9e+02 Score=27.28 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHH
Q 002902 499 LELDILAATRDLDFERRRLKAARERIMLR-ETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 499 Le~ELeka~reLE~Ek~rLq~erErLq~r-eqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
++.||+.|...|+.-...+...+..+... ...++.+..-.+..-+-|+.-...|..|+..|++
T Consensus 179 ~eeEle~A~~~fe~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~ 242 (256)
T 1zww_A 179 PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE 242 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665555555544 2333333333334444556666677777777776
No 207
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=33.17 E-value=4e+02 Score=26.94 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002902 502 DILAATRDLDFERRRL 517 (868)
Q Consensus 502 ELeka~reLE~Ek~rL 517 (868)
.+.++..+|..-...+
T Consensus 171 k~~ka~~~Y~~~v~~~ 186 (276)
T 2v0o_A 171 KSKKATDTYKLYVEKY 186 (276)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 208
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.01 E-value=1.6e+02 Score=23.49 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002902 464 WKKRVEELENEIKKLREELE 483 (868)
Q Consensus 464 lqkel~elE~eIreLeeELe 483 (868)
+...+.....+|..|+++|+
T Consensus 28 L~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 28 LMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444443333
No 209
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=32.94 E-value=6.5e+02 Score=29.37 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHH
Q 002902 518 KAARERIMLRETQLRAFYSTTEEIS 542 (868)
Q Consensus 518 q~erErLq~reqQlkae~ek~EEi~ 542 (868)
+.--+.+..-+-|.+.++.+.++..
T Consensus 125 Q~w~e~lae~l~q~rqql~~l~~l~ 149 (575)
T 1bf5_A 125 QNWFTIVAESLQQVRQQLKKLEELE 149 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666676666655544
No 210
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=31.91 E-value=1.5e+02 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 488 AREVAWAKVSGLELDILAATRDLDFERRRLKAARE 522 (868)
Q Consensus 488 e~eel~d~i~~Le~ELeka~reLE~Ek~rLq~erE 522 (868)
+.+.+...+-.|+..=.+.+..||+|..||+.+++
T Consensus 51 Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 51 EMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555556677788888888876665
No 211
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.81 E-value=2.2e+02 Score=28.64 Aligned_cols=19 Identities=5% Similarity=-0.125 Sum_probs=9.8
Q ss_pred ccCCCCCCCCccccccccc
Q 002902 573 DLCVPDGENSRTIVGEKLP 591 (868)
Q Consensus 573 dlnele~~~~~~~~~~~~~ 591 (868)
-+...+.+..|...+|+++
T Consensus 85 ~V~~~~ed~~~~~FDc~Qt 103 (190)
T 4emc_A 85 RVHKSYEDDSGLWFDISQG 103 (190)
T ss_dssp ECCCCCCCSSCEEEEEEES
T ss_pred EEEEEEEcCCCeEEEEEec
Confidence 3444445555555666544
No 212
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.62 E-value=1.7e+02 Score=33.00 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKE 311 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~ 311 (868)
+..++++|+++.....++
T Consensus 43 ~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 213
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.55 E-value=2.8e+02 Score=24.64 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 427 ESLKLKLDETRERLVTS 443 (868)
Q Consensus 427 EdL~~eLE~~ra~~~~L 443 (868)
..++..+..++....+.
T Consensus 24 ~~lKq~RRtlKNRgyAq 40 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQ 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHH
Confidence 34444444444433333
No 214
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.24 E-value=2.3e+02 Score=27.25 Aligned_cols=7 Identities=14% Similarity=0.639 Sum_probs=0.0
Q ss_pred HhhhHHH
Q 002902 555 MQKTLED 561 (868)
Q Consensus 555 LQ~eLE~ 561 (868)
|.+.|++
T Consensus 120 LrRDLeA 126 (146)
T 2xnx_M 120 LRRDLDA 126 (146)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3444444
No 215
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.43 E-value=1.6e+02 Score=22.61 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 315 ISRISAEQKHEMEDLNDRLSAS 336 (868)
Q Consensus 315 l~~~k~kLEsEl~EL~~qLe~~ 336 (868)
++.+.+.|+..+.+|+.+++.+
T Consensus 8 LE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444333443333333
No 216
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.03 E-value=4.8e+02 Score=26.97 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVL 301 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~KklE~QLeEL 301 (868)
++|-.|-.++.++..+ +...++..|..+|.|+.+ |..+...+... .++..+|..|
T Consensus 69 dklgvLl~e~ge~e~~---~a~~~d~yR~~LK~IR~~-E~svqp~R~~R-~~l~~~I~kL 123 (234)
T 3plt_A 69 DKLGVLIYELGELQDQ---FIDKYDQYRVTLKSIRNI-EASVQPSRDRK-EKITDEIAHL 123 (234)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHhhHHHHHH-HHHHHHHHHH
Confidence 3444444443333333 344445577777777776 44444444443 3444544443
No 217
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.85 E-value=1.3e+02 Score=33.64 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 441 VTSDNKVRLLETQVCKEQNVSASWKKR 467 (868)
Q Consensus 441 ~~LEkkqr~LE~qLeEEk~~~~~lqke 467 (868)
.+++.+.+.+..+++..++..+.+.++
T Consensus 31 ~~~~~~~r~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 31 LALDREVQELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 218
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.82 E-value=1.2e+02 Score=27.35 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=17.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002902 528 ETQLRAFYSTTEEISVLFARQQEQLKAMQKTLEDE 562 (868)
Q Consensus 528 eqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~E 562 (868)
++++.+++...+.+....+-+-.+---|+.+|+.-
T Consensus 56 I~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 56 IARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333444444455544444444555566666653
No 219
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.78 E-value=2.4e+02 Score=32.29 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=3.5
Q ss_pred hhhhcCC
Q 002902 817 LKVQFGG 823 (868)
Q Consensus 817 ~~~~~~~ 823 (868)
+|.-|||
T Consensus 457 L~pym~g 463 (484)
T 3lss_A 457 LRPYMMG 463 (484)
T ss_dssp GGGGTTT
T ss_pred hcCccCC
Confidence 4555544
No 220
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.23 E-value=3.2e+02 Score=24.66 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002902 465 KKRVEELENEIKKLREELESEK 486 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~ 486 (868)
-.++++|+.++..|+.|-..++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444443
No 221
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.17 E-value=2.6e+02 Score=26.30 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 002902 540 EISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 540 Ei~e~~k~~~~qLr~LQ~eLE~ 561 (868)
.+...+..-...|...|..|+.
T Consensus 100 ~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 100 GLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555554
No 222
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=27.97 E-value=4.8e+02 Score=27.11 Aligned_cols=75 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKAAREVAWA 494 (868)
Q Consensus 420 KK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d 494 (868)
+.++.+.+.+..+|+-+--+-.-....+++++.+|+..+.....+-.+++.+|..=..|+.+|......++.+.+
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 223
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.83 E-value=1.2e+02 Score=33.77 Aligned_cols=7 Identities=14% Similarity=-0.240 Sum_probs=3.2
Q ss_pred ccccCCC
Q 002902 571 DIDLCVP 577 (868)
Q Consensus 571 ~~dlnel 577 (868)
...|.||
T Consensus 198 nE~i~DL 204 (412)
T 3u06_A 198 NEVLYDL 204 (412)
T ss_dssp TTEEEET
T ss_pred CCeeEEc
Confidence 3444444
No 224
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.78 E-value=1.8e+02 Score=30.94 Aligned_cols=6 Identities=50% Similarity=0.828 Sum_probs=2.5
Q ss_pred cccccc
Q 002902 628 QEAEFT 633 (868)
Q Consensus 628 ~~~~~~ 633 (868)
|.+.++
T Consensus 212 ~~v~v~ 217 (369)
T 4dk0_A 212 QDVTFT 217 (369)
T ss_dssp CCCCEE
T ss_pred CeEEEE
Confidence 344444
No 225
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.73 E-value=4.2e+02 Score=25.55 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 002902 383 VQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCK---EQN 459 (868)
Q Consensus 383 L~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeE---Ek~ 459 (868)
++.|.+.+.-|..-++ ...+.-+.+-..-.-.-+.-.++....++.-..+...+..+.++++|...++.+|.. ..-
T Consensus 22 l~qL~nrla~~~am~~-sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P 100 (158)
T 3tul_A 22 LSQLESRLAVWQAMIE-SQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADP 100 (158)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 460 VSASWKKRVEELENEIKKLREELESEKAAREVA 492 (868)
Q Consensus 460 ~~~~lqkel~elE~eIreLeeELe~e~~e~eel 492 (868)
.+.+++..++.+-.++.++++-++.--.+.+.+
T Consensus 101 ~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~~a 133 (158)
T 3tul_A 101 GYAQAEAAVEQAGKEATEAKEALDKATDATVKA 133 (158)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 226
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.71 E-value=1.7e+02 Score=23.71 Aligned_cols=33 Identities=36% Similarity=0.446 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 465 KKRVEELENEIKKLREELESEKAAREVAWAKVS 497 (868)
Q Consensus 465 qkel~elE~eIreLeeELe~e~~e~eel~d~i~ 497 (868)
.-++.+|.++...|..-|+.+..++..++..++
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 227
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=27.45 E-value=5e+02 Score=26.27 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHHHhhhHHH
Q 002902 500 ELDILAATRDLDFERRRLKAARERIMLR-ETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 561 (868)
Q Consensus 500 e~ELeka~reLE~Ek~rLq~erErLq~r-eqQlkae~ek~EEi~e~~k~~~~qLr~LQ~eLE~ 561 (868)
+.||+.|...|+.-...+...+..+... ...++.+..-.+..-.-|+.-...|.+|+..|++
T Consensus 164 eeEl~~A~~~fe~~~e~~~~~m~~~~~~~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~ 226 (240)
T 2z0v_A 164 DEEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQM 226 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555554444444333 3333333333334444556666677777777776
No 228
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.33 E-value=2.5e+02 Score=22.84 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 328 DLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (868)
Q Consensus 328 EL~~qLe~~e~~~~eL~k~l~kLe~qI~EL 357 (868)
+|..++..++..+..|..++..|..++..|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333
No 229
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.18 E-value=1.7e+02 Score=23.77 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 337 MQSCTEANEIMKSQK 351 (868)
Q Consensus 337 e~~~~eL~k~l~kLe 351 (868)
+..+..|...+..|.
T Consensus 35 ~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 35 KAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 230
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=27.12 E-value=6e+02 Score=28.84 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002902 377 ADLKAAVQKSQLETQEKLKRLS 398 (868)
Q Consensus 377 ~eLq~qL~kl~~el~eerkk~e 398 (868)
..|+..+..++..++.....+.
T Consensus 166 ~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 166 RVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 231
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.06 E-value=2.1e+02 Score=23.22 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDL 329 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL 329 (868)
+.+|..+++.++.....+...+..|..++..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 232
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=27.04 E-value=2e+02 Score=23.26 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qL 333 (868)
++.+|..++..++..-+...++...|..|+.++.....-|
T Consensus 12 le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 12 LLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444444444444444444444444544444444433
No 233
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.29 E-value=1.1e+02 Score=31.70 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (868)
Q Consensus 316 ~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq 358 (868)
+.++..++..+.+|..++++........++.+++++..+.+|.
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 234
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.24 E-value=3.9e+02 Score=25.81 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 242 DDFRSLQRSNTELRKQLESQVLEIDK---------LRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRD 303 (868)
Q Consensus 242 d~Vr~LE~En~eLr~qLEe~~~ei~~---------Lr~evk~i~er~E~El~El~E~i~KklE~QLeELq~ 303 (868)
..+..++.+...|+.+....+.+... +..++..++..|++++.+..+.+ +++..+++.++.
T Consensus 36 ~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k-~~l~~ql~qv~~ 105 (150)
T 4dci_A 36 NGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQK-RNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
No 235
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=26.16 E-value=5.1e+02 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=10.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHhh
Q 002902 535 YSTTEEISVLFARQQEQLKAMQK 557 (868)
Q Consensus 535 ~ek~EEi~e~~k~~~~qLr~LQ~ 557 (868)
+-...+++++.+-...+|..|..
T Consensus 161 l~eqReLddkIklgeEQL~~L~~ 183 (190)
T 3thf_A 161 IADARDLAVRIKGSEEQLSSLSD 183 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHhhHHHHHHHHH
Confidence 34444444444444444444433
No 236
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.12 E-value=4.8e+02 Score=25.67 Aligned_cols=19 Identities=16% Similarity=0.548 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002902 467 RVEELENEIKKLREELESE 485 (868)
Q Consensus 467 el~elE~eIreLeeELe~e 485 (868)
+++++..++.+|+.++..+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 237
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.83 E-value=2.7e+02 Score=22.73 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 331 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~ 331 (868)
..++..++.+++....+|...+..|+.++.-|..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555444455555555554444433
No 238
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.27 E-value=1.4e+02 Score=32.42 Aligned_cols=6 Identities=50% Similarity=1.121 Sum_probs=2.8
Q ss_pred cCCCCC
Q 002902 640 KGGFGS 645 (868)
Q Consensus 640 ~~~~~~ 645 (868)
+.|||.
T Consensus 134 k~GFG~ 139 (323)
T 1lwu_C 134 REGFGY 139 (323)
T ss_dssp HHCEEE
T ss_pred hhhhCC
Confidence 345553
No 239
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=25.22 E-value=7e+02 Score=27.30 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=4.7
Q ss_pred cceeEEe
Q 002902 126 NHCKIYR 132 (868)
Q Consensus 126 ~Hc~I~~ 132 (868)
+|++|.+
T Consensus 58 ~H~rI~~ 64 (373)
T 3hhm_B 58 KLIKIFH 64 (373)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 6777764
No 240
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.20 E-value=3.5e+02 Score=23.82 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 305 LDAKQKELAEISRISAEQKHEMEDL 329 (868)
Q Consensus 305 LeE~ek~l~el~~~k~kLEsEl~EL 329 (868)
+.+.++.+.++...+.+|+-++..+
T Consensus 36 i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555555554444
No 241
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.07 E-value=4.1e+02 Score=26.23 Aligned_cols=33 Identities=3% Similarity=-0.055 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANE 345 (868)
Q Consensus 313 ~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k 345 (868)
.++..-+.+|+..+..|..++..++..+..+..
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 242
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.99 E-value=3.2e+02 Score=23.25 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 002902 325 EMEDLNDRLSAS 336 (868)
Q Consensus 325 El~EL~~qLe~~ 336 (868)
+.++|..++...
T Consensus 12 E~eel~~klk~~ 23 (71)
T 1uix_A 12 EKEELNNKLKEA 23 (71)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 243
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.75 E-value=3.8e+02 Score=24.04 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 307 AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEA 343 (868)
Q Consensus 307 E~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL 343 (868)
...+.+.+..+++..++.++++-..+|..++.+.++|
T Consensus 52 anTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaL 88 (114)
T 2xzr_A 52 ANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEI 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333
No 244
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=24.74 E-value=5.1e+02 Score=25.48 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002902 497 SGLELDILAATRDLDFERRRL 517 (868)
Q Consensus 497 ~~Le~ELeka~reLE~Ek~rL 517 (868)
..++..+.++.+.++.+.+.|
T Consensus 88 a~lEqkVaeq~e~Ve~e~q~L 108 (169)
T 3k29_A 88 SEEEEKVNKQKENVLAASKEL 108 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445444444
No 245
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.72 E-value=2e+02 Score=32.08 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQK 310 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek 310 (868)
+..++++|+++.....+
T Consensus 40 ~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444333333333
No 246
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.66 E-value=3.2e+02 Score=23.21 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 457 EQNVSASWKKRVEELENEIKKLREELESEKAAREVAWAKVSGLELD 502 (868)
Q Consensus 457 Ek~~~~~lqkel~elE~eIreLeeELe~e~~e~eel~d~i~~Le~E 502 (868)
+......+++++...+.+|+.|++.+.--.+.++.+.+.+-.|--|
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIE 61 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIE 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHH
No 247
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=24.52 E-value=5.8e+02 Score=26.07 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 462 ASWKKRVEELENEIKKLREELESEKA 487 (868)
Q Consensus 462 ~~lqkel~elE~eIreLeeELe~e~~ 487 (868)
..+...+..++.+|+.|......+..
T Consensus 168 e~ie~dL~~~e~~i~~l~~~a~~L~~ 193 (235)
T 2odv_A 168 GEVERDLDKADSMIRLLFNDVQTLKD 193 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555554444443
No 248
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=24.45 E-value=6.2e+02 Score=26.41 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=29.8
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 002902 230 IGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSI 292 (868)
Q Consensus 230 lg~g~~~g~vsid~Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~K 292 (868)
.++=..+-|++++.++.-.... ..++....+++.++.+|-++...+....+.
T Consensus 10 ~~~l~e~epitlEeLkq~K~f~-----------Kl~KKQqKEl~~LkKKH~Ke~~~lqK~~~~ 61 (251)
T 1jad_A 10 VTQLPEPQTASLAELQQMKLFL-----------KLLKKQEKELKELERKGSKRREELLQKYSV 61 (251)
T ss_dssp TSCCCCCCCCCHHHHTTSHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888887754443 233334455555566666666666654443
No 249
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.28 E-value=4.1e+02 Score=24.27 Aligned_cols=94 Identities=7% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 002902 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSI------------------------------- 292 (868)
Q Consensus 244 Vr~LE~En~eLr~qLEe~~~ei~~Lr~evk~i~er~E~El~El~E~i~K------------------------------- 292 (868)
+..|......++.+++.+...+..++..+..+..- ++.+.....+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~----~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEIL----EKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 293 ------SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (868)
Q Consensus 293 ------klE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~ 341 (868)
.+...+.-+..|++.+++.+..+...+..+...+..+...|..+....+
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~~ 133 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAVA 133 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 250
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=23.80 E-value=2.5e+02 Score=26.50 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002902 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 366 (868)
Q Consensus 294 lE~QLeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr~ 366 (868)
+...|++-+.+|++.+.....+..+..-++..+..+..++++... .+.-.+.+|..++..++..|.=|+.
T Consensus 7 L~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kq---q~~~~~d~L~lQ~esmeaalkmEr~ 76 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQ---QHSVQVDQLRMQGQSVEAALRMERQ 76 (130)
T ss_dssp --------------------------------------------C---TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777776666555555444444444333333333222 1223344555555555555544443
No 251
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.74 E-value=1.4e+02 Score=31.46 Aligned_cols=7 Identities=57% Similarity=0.501 Sum_probs=3.2
Q ss_pred ccccccC
Q 002902 628 QEAEFTS 634 (868)
Q Consensus 628 ~~~~~~~ 634 (868)
|.+.++.
T Consensus 211 ~~v~v~~ 217 (341)
T 3fpp_A 211 QKAWFTV 217 (341)
T ss_dssp CCCEECC
T ss_pred CEEEEEE
Confidence 3444443
No 252
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=23.26 E-value=4.4e+02 Score=24.18 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 407 EQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS 461 (868)
Q Consensus 407 Elee~l~KLeE~EKK~r~elEdL~~eLE~~ra~~~~LEkkqr~LE~qLeEEk~~~ 461 (868)
....++..|...-......|..+...++..+..+....++.+.|+...+......
T Consensus 71 ~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~ 125 (150)
T 3ajw_A 71 NYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAA 125 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666777777777777777777777766555544433
No 253
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=23.07 E-value=1.1e+03 Score=28.78 Aligned_cols=7 Identities=0% Similarity=0.135 Sum_probs=0.0
Q ss_pred cccCCCC
Q 002902 572 IDLCVPD 578 (868)
Q Consensus 572 ~dlnele 578 (868)
.|.+=|+
T Consensus 817 ~q~kll~ 823 (861)
T 2zuo_A 817 MQVKLLQ 823 (861)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444444
No 254
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=22.89 E-value=6.1e+02 Score=25.74 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002902 464 WKKRVEELENEIKKL 478 (868)
Q Consensus 464 lqkel~elE~eIreL 478 (868)
+..++...+.+|..-
T Consensus 89 ~~a~l~dHE~RIt~~ 103 (242)
T 3c9i_A 89 LRIDVDDHESRITAN 103 (242)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHhhhh
Confidence 333333333333333
No 255
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.85 E-value=2.8e+02 Score=31.69 Aligned_cols=23 Identities=4% Similarity=0.049 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002902 292 ISYLHQLKVLRDMLDAKQKELAE 314 (868)
Q Consensus 292 KklE~QLeELq~kLeE~ek~l~e 314 (868)
|.+..++++|+++.....+++..
T Consensus 47 r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665554
No 256
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.83 E-value=2.8e+02 Score=24.34 Aligned_cols=44 Identities=7% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 309 QKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (868)
Q Consensus 309 ek~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~ 352 (868)
+++.+.|...+.+|+.++..-..+|..++..+....+.++.|+.
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 257
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.63 E-value=5.6e+02 Score=25.20 Aligned_cols=47 Identities=6% Similarity=0.124 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 310 KELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (868)
Q Consensus 310 k~l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~kLe~qI~E 356 (868)
..+.-+..+...++..+.+...++..+...+......+.....+...
T Consensus 78 ~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eK 124 (169)
T 3k29_A 78 AYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEK 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666655544444443
No 258
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=22.38 E-value=9.2e+02 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002902 377 ADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIA 418 (868)
Q Consensus 377 ~eLq~qL~kl~~el~eerkk~eee~~~~~EElee~l~KLeE~ 418 (868)
.+++++++.-++..++|+.+...+ ...++++.+...|.+.
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~~--~Aer~~e~a~ael~~a 333 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPVE--AAERNYERARAELNQA 333 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcHH--HHHHHHHHHHHHHHHH
Confidence 444555555555667776665532 2334455444444443
No 259
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=22.33 E-value=9.2e+02 Score=27.61 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=12.0
Q ss_pred ccccccCCCCCCCCCCCCCCC
Q 002902 747 SWACSTAPSVHGENESPRSRD 767 (868)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~ 767 (868)
||-...+|.+|-+- =-||++
T Consensus 436 a~~~~~st~iH~~R-l~RS~~ 455 (526)
T 3iyk_A 436 AISNAFGTQMHTRR-LVRSKT 455 (526)
T ss_pred HhcCCCCcHHHHHH-HHhccc
Confidence 57777777777543 235554
No 260
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=21.57 E-value=39 Score=30.94 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=21.4
Q ss_pred eeeCCeeccC-CCCccccCCCCEEEecc
Q 002902 160 TYVNCERFKK-NSSEVNIDHGDIISFAA 186 (868)
Q Consensus 160 TfVNg~ki~k-~~~~~~L~~GD~I~~~~ 186 (868)
.+|||+.+.- ++..+.|++||+|.|..
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 7889987742 36678999999999964
No 261
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.44 E-value=2.7e+02 Score=28.67 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (868)
Q Consensus 312 l~el~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~ 348 (868)
+..+...+.+.+.+++.+.++|+....+.+++.....
T Consensus 180 l~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 180 CHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444555555555555555555544443
No 262
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.42 E-value=2e+02 Score=27.97 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhh
Q 002902 513 ERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQK 557 (868)
Q Consensus 513 Ek~rLq~erErLq~reqQlkae~ek~EEi~e~~k~~~~qLr~LQ~ 557 (868)
+.++|+.++.+++.|++++++++........-|+++.++=+.+..
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777788888899988888888888888888777666553
No 263
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.22 E-value=4.5e+02 Score=23.58 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 002902 319 SAEQKHEMEDL 329 (868)
Q Consensus 319 k~kLEsEl~EL 329 (868)
-.-|+++|+..
T Consensus 80 A~~L~~eLe~F 90 (96)
T 1t3j_A 80 AVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 264
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.21 E-value=3.2e+02 Score=21.92 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLND 331 (868)
Q Consensus 298 LeELq~kLeE~ek~l~el~~~k~kLEsEl~EL~~ 331 (868)
+.+|+.+.+.++.....+...+..|..++..|..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555545455555555544444433
No 265
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.00 E-value=6.7e+02 Score=25.48 Aligned_cols=36 Identities=6% Similarity=0.095 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002902 330 NDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (868)
Q Consensus 330 ~~qLe~~e~~~~eL~k~l~kLe~qI~ELq~qLEEEr 365 (868)
..++..+...+.++...+.++.+.+..+++..+.++
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~ 100 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEM 100 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444455555555555444444
No 266
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.71 E-value=4e+02 Score=23.33 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESE 485 (868)
Q Consensus 444 Ekkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e 485 (868)
++++..|...|.+-+..+ ..+..++.++..|+.+++.+
T Consensus 35 E~RR~AL~eaL~EN~~Lh----~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 35 EKRRKALYEALKENEKLH----KEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 566667777666654433 33444444444444444443
No 267
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.39 E-value=4.9e+02 Score=23.73 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKS 349 (868)
Q Consensus 316 ~~~k~kLEsEl~EL~~qLe~~e~~~~eL~k~l~k 349 (868)
...+..|..++.+|...++.++..++-.-..++.
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433333333
No 268
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.31 E-value=4.1e+02 Score=26.94 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002902 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (868)
Q Consensus 444 Ekkqr~LE~qLeEEk~~~~~lqkel~elE~eIreLeeELe~e~ 486 (868)
|+++..|...|.+-+..+ ..+..++.+|..|++++..++
T Consensus 104 E~RR~AL~eaLeEN~~Lh----~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 104 EKRRKALYEALKENEKLH----KEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666544433 334445555555554444443
No 269
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=20.31 E-value=56 Score=28.92 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=22.1
Q ss_pred CcCCeeeCCeeccC-CCCccccCCCCEEEec
Q 002902 156 STNGTYVNCERFKK-NSSEVNIDHGDIISFA 185 (868)
Q Consensus 156 StNGTfVNg~ki~k-~~~~~~L~~GD~I~~~ 185 (868)
|++-.+|||..+.+ .+..+.|++||+|.|.
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 44568889987743 1335689999999997
Done!