BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002903
(868 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 1560 bits (4038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/868 (85%), Positives = 798/868 (91%), Gaps = 2/868 (0%)
Query: 1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
MLNLANLAEE+QIA+RRRIK LK+GDFADE +ATTESDIEETFK+LV +LNKSPEE+FDA
Sbjct: 107 MLNLANLAEEVQIAYRRRIK-LKRGDFADEANATTESDIEETFKKLVLKLNKSPEEVFDA 165
Query: 61 LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
LKNQTVDLVLTAHPTQSVRRSLLQKH RIRNCLAQLYAKDITPDDKQELDEAL REIQAA
Sbjct: 166 LKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAA 225
Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
FRTDEIRRT PTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ
Sbjct: 226 FRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 285
Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
FSSWMGGDRDGNPRVTPEVTRDVCLLARMMA+N+Y+SQIEDLMFEMSMWRC+ ELR RA+
Sbjct: 286 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMASNMYFSQIEDLMFEMSMWRCNSELRVRAE 345
Query: 241 VLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAV 300
L+R++++D KHYIEFWKQ+PP EPYRVILGDVRDKLY TRER R LLAHGISDIPEEAV
Sbjct: 346 ELYRTARRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERSRHLLAHGISDIPEEAV 405
Query: 301 FTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDV 360
+TNVEQFLEPLELCYRSLC CGDR IADGSLLDFLRQVSTFGLSLV+LDIRQESDRHTDV
Sbjct: 406 YTNVEQFLEPLELCYRSLCDCGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDV 465
Query: 361 IDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELP 420
+DAIT+HLEIGSYREWSEEKRQEWLL+ELSGKRPLFG DLPKTEE+ DVL+TF+V+AELP
Sbjct: 466 LDAITQHLEIGSYREWSEEKRQEWLLAELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELP 525
Query: 421 ADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSVD 480
+D FGAYIISMAT+PSDVLAVELLQRECHVK PLRVVPLFEK FS+D
Sbjct: 526 SDCFGAYIISMATSPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAAMARLFSID 585
Query: 481 WYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXXX 540
WYRNRI+GKQEVMIGYSDSGKDAGRFSAAWQLYKAQEE+IKVAK++G+KL +FH
Sbjct: 586 WYRNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTV 645
Query: 541 XXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRP 600
PTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM P
Sbjct: 646 GRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNP 705
Query: 601 PISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 660
PISP+PEWR +MD+MAV+ATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP
Sbjct: 706 PISPRPEWRELMDQMAVVATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 765
Query: 661 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT 720
SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKH I+KD +NL MLQEMY WPFFRVT
Sbjct: 766 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIKKDSKNLQMLQEMYKTWPFFRVT 825
Query: 721 IDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDP 780
IDLVEMVFAKG+ IAAL D+LLVS+DLW FGE LR NYEETK LL+IAGH+DLLEGDP
Sbjct: 826 IDLVEMVFAKGDPGIAALNDKLLVSEDLWPFGESLRANYEETKDYLLKIAGHRDLLEGDP 885
Query: 781 YLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLN 840
YLKQR+RLRD+YITTLNVCQAYTLKRIRDPNYHV +RPHIS+E +E KPADEL+ LN
Sbjct: 886 YLKQRIRLRDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYA-AEPSKPADELIHLN 944
Query: 841 LSSEYAPGLEDTLILTMKGIAAGLQNTG 868
+SEYAPGLEDTLILTMKGIAAG+QNTG
Sbjct: 945 PTSEYAPGLEDTLILTMKGIAAGMQNTG 972
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 1513 bits (3917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/868 (83%), Positives = 781/868 (89%), Gaps = 2/868 (0%)
Query: 1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
MLNLANLAEELQIA+RRRIK LK GDFADE +ATTESDIEETFKRLV +LNKSPEE+FDA
Sbjct: 125 MLNLANLAEELQIAYRRRIK-LKSGDFADEANATTESDIEETFKRLVHKLNKSPEEVFDA 183
Query: 61 LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
LKNQTV+LVLTAHPTQSVRRSLLQKH RIRNCLAQLYAKDITPDDKQELDEAL REIQAA
Sbjct: 184 LKNQTVELVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAA 243
Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
FRTDEIRRT PTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINER PYNAPLIQ
Sbjct: 244 FRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERFPYNAPLIQ 303
Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
FSSWMGGDRDGNPRVTPEVTRDVCLLARMM +N+Y+SQIEDLM EMSMWRC+ ELR RA+
Sbjct: 304 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMTSNMYFSQIEDLMIEMSMWRCNSELRVRAE 363
Query: 241 VLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAV 300
L+R+++KD KHYIEFWK+IPPN+PYRVILGDVRDKLY TRER R LL G SDIP+EAV
Sbjct: 364 ELYRTARKDVKHYIEFWKRIPPNQPYRVILGDVRDKLYNTRERSRHLLVDGKSDIPDEAV 423
Query: 301 FTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDV 360
+TNVEQ LEPLELCYRSLC CGD IADGSLLDFLRQVSTFGLSLV+LDIRQESDRHT+V
Sbjct: 424 YTNVEQLLEPLELCYRSLCDCGDHVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTEV 483
Query: 361 IDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELP 420
+DAIT+HL IGSYREWSEEKRQEWLL+ELSGKRPL GPDLPKTEE+ D L+TF V+AELP
Sbjct: 484 LDAITQHLGIGSYREWSEEKRQEWLLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELP 543
Query: 421 ADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSVD 480
+D FGAYIISMAT+ SDVLAVELLQRE H+K PLRVVPLFEK FS+D
Sbjct: 544 SDCFGAYIISMATSTSDVLAVELLQREYHIKHPLRVVPLFEKLADLEAAPAAMTRLFSMD 603
Query: 481 WYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXXX 540
WYRNRI+GKQEVMIGYSDSGKDAGRFSAAWQLYK QE+++K+AK++G+KL +FH
Sbjct: 604 WYRNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTV 663
Query: 541 XXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRP 600
PTHLA+LSQPPDTI+GSLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM P
Sbjct: 664 GRGGGPTHLALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNP 723
Query: 601 PISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 660
PISP+PEWR +MD+MAV+ATEEYRS+VFKEPRFVEYFRLATPELE+GRMNIGSRPSKRKP
Sbjct: 724 PISPRPEWRELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKP 783
Query: 661 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT 720
SGGIESLRAIPWIF+WTQTRFHLPVWLGFGAAFKH IQKD +NL MLQEMY WPFFRVT
Sbjct: 784 SGGIESLRAIPWIFSWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVT 843
Query: 721 IDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDP 780
IDLVEMVFAKGN IAAL D+LLVS+DL FGE LR NYEETK LL+IAGHKDLLEGDP
Sbjct: 844 IDLVEMVFAKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDP 903
Query: 781 YLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLN 840
YLKQ +RLRD YITTLNVCQAYTLKRIRDPNYHV +RPHIS+E +E KPADEL+ LN
Sbjct: 904 YLKQGIRLRDPYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYA-AEPSKPADELIHLN 962
Query: 841 LSSEYAPGLEDTLILTMKGIAAGLQNTG 868
+SEYAPGLEDTLILTMKGIAAG+QNTG
Sbjct: 963 PTSEYAPGLEDTLILTMKGIAAGMQNTG 990
>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
pdb|1JQO|B Chain B, Crystal Structure Of C4-Form Phosphoenolpyruvate
Carboxylase From Maize
Length = 970
Score = 1393 bits (3606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/869 (77%), Positives = 746/869 (85%), Gaps = 4/869 (0%)
Query: 1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
MLNLANLAEE+QIAHRRR KLKKG FADE SATTESDIEET KRLV E+ KSPEE+F+A
Sbjct: 105 MLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEA 164
Query: 61 LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
LKNQTVDLV TAHPTQS RRSLLQK+ARIRNCL QL AKDIT DDKQELDEALQREIQAA
Sbjct: 165 LKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAA 224
Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
FRTDEIRR QPTPQ EMR GMSY HET+WKGVPKFLRRVDTALKNIGINER+PYN LI+
Sbjct: 225 FRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIR 284
Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLY QIE+LMFE+SMWRC+DELR RA+
Sbjct: 285 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAE 344
Query: 241 VLHRSS-KKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEA 299
LH SS K K+YIEFWKQIPPNEPYRVILG VRDKLY TRER R LLA G+S+I E+
Sbjct: 345 ELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAES 404
Query: 300 VFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTD 359
FT++E+FLEPLELCY+SLC CGD+AIADGSLLD LRQV TFGLSLV+LDIRQES+RHTD
Sbjct: 405 SFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTD 464
Query: 360 VIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAEL 419
VIDAIT HL IGSYREW E+KRQEWLLSEL GKRPL PDLP+T+EIADV+ FHV+AEL
Sbjct: 465 VIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAEL 524
Query: 420 PADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSV 479
P D+FG YIISMATAPSDVLAVELLQREC V+QPL VVPLFE+ FSV
Sbjct: 525 PPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSV 584
Query: 480 DWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXX 539
DWY +RI GKQ+VM+GYSDSGKDAGR SAAWQLY+AQEE+ +VAK+YG+KLT+FH
Sbjct: 585 DWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGT 644
Query: 540 XXXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMR 599
PTHLAILSQPPDTI+GS+RVTVQGEVIE FGEEHLCF+TLQRFTAATLEHGM
Sbjct: 645 VGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMH 704
Query: 600 PPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRK 659
PP+SPKPEWR +MDEMAV+ATEEYRS+V KE RFVEYFR ATPE EYGRMNIGSRP+KR+
Sbjct: 705 PPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRR 764
Query: 660 PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRV 719
P GGI +LRAIPWIF+WTQTRFHLPVWLG GAAFK I KD+RN +L+EMYN WPFFRV
Sbjct: 765 PGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRV 824
Query: 720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGD 779
T+DL+EMVFAKG+ IA LYD+LLV+++L FG++LR Y ET+ LLLQIAGHKD+LEGD
Sbjct: 825 TLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGD 884
Query: 780 PYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKL 839
P+LKQ L LR+ YITTLNV QAYTLKRIRDPN+ V +P +S+E + KPA LVKL
Sbjct: 885 PFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEFADEN--KPAG-LVKL 941
Query: 840 NLSSEYAPGLEDTLILTMKGIAAGLQNTG 868
N +SEY PGLEDTLILTMKGIAAG+QNTG
Sbjct: 942 NPASEYPPGLEDTLILTMKGIAAGMQNTG 970
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 623 bits (1606), Expect = e-178, Method: Compositional matrix adjust.
Identities = 350/869 (40%), Positives = 501/869 (57%), Gaps = 66/869 (7%)
Query: 2 LNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDAL 61
LNLAN AE+ KG+ +A+ I T ++L + S + I A+
Sbjct: 79 LNLANTAEQYHSIS-------PKGE-----AASNPEVIARTLRKLKNQPELSEDTIKKAV 126
Query: 62 KNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAF 121
++ +++LVLTAHPT+ RR+L+ K + CL QL KDI + +L L++ I ++
Sbjct: 127 ESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSW 186
Query: 122 RTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALK-NIGINERVPYNAPLIQ 180
TDEIR+ +P+P DE + G + ++W+GVP +LR ++ L+ N+G ++P ++
Sbjct: 187 HTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGY--KLPVEFVPVR 244
Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
F+SWMGGDRDGNP VT ++TR V LL+R A +L+ I+ L+ E+SM + EL
Sbjct: 245 FTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPEL----- 299
Query: 241 VLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPE-EA 299
L ++ A EPYR ++ ++R +L T+ + L ++P+ E
Sbjct: 300 -LALVGEEGAA------------EPYRYLMKNLRSRLMATQAWLEARLKG--EELPKPEG 344
Query: 300 VFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTD 359
+ T E+ EPL CY+SL +CG IA+G LLD LR+V FG+ LVR+DIRQES RHT+
Sbjct: 345 LLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTE 404
Query: 360 VIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAEL 419
+ +T++L IG Y WSE +Q +L+ EL+ KRPL + + E +VL+T VIAE
Sbjct: 405 ALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEA 464
Query: 420 PADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSV 479
P + AY+ISMA PSDVLAV LL +E + + V PLFE ++
Sbjct: 465 PQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNI 524
Query: 480 DWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXX 539
DWYR I GKQ VMIGYSDS KDAG +A+W Y+AQ+ LIK ++ GI+LT+FH
Sbjct: 525 DWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGS 584
Query: 540 XXXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMR 599
P H A+LSQPP ++ G LRVT QGE+I +G + +L +T A LE +
Sbjct: 585 IGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLL 644
Query: 600 PPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRK 659
PP PK WR +MDE++VI+ + YR V + FV YFR ATPE E G++ +GSRP+KR+
Sbjct: 645 PPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRR 704
Query: 660 PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRV 719
P+GG+ESLRAIPWIFAWTQ R LP WLG G A + V++ ++ L+ M +WPFF
Sbjct: 705 PTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQS--ELEAMCRDWPFFST 762
Query: 720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGD 779
+ ++EMVFAK + +A YDQ LV K LW G++LR EE ++L IA L+
Sbjct: 763 RLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADL 822
Query: 780 PYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKL 839
P++ + ++LR+ Y LNV QA L R R E E +P
Sbjct: 823 PWIAESIQLRNIYTDPLNVLQAELLHRSRQ---------------AEKEGQEP------- 860
Query: 840 NLSSEYAPGLEDTLILTMKGIAAGLQNTG 868
P +E L++T+ GIAAG++NTG
Sbjct: 861 ------DPRVEQALMVTIAGIAAGMRNTG 883
>pdb|3EJK|A Chain A, Crystal Structure Of Dtdp Sugar Isomerase (yp_390184.1)
From Desulfovibrio Desulfuricans G20 At 1.95 A
Resolution
Length = 174
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 167 GINERVPYNAPLIQFSSWMGGDRDGNP 193
G +ER P +AP I F SW G D G P
Sbjct: 147 GESERAPQDAPFIPF-SWAGADLSGTP 172
>pdb|2GU1|A Chain A, Crystal Structure Of A Zinc Containing Peptidase From
Vibrio Cholerae
Length = 361
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 552 LSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTM 611
+S P IH ++V G+ + F + + + LQ+ + L+H I P E M
Sbjct: 1 MSLQPKRIHYMVKV---GDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELM 57
Query: 612 MDEMAVIATEEYR-SIVFK 629
MD+M ++ Y SIV K
Sbjct: 58 MDDMGQLSRLIYHMSIVEK 76
>pdb|1BML|C Chain C, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|D Chain D, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 362
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 813 HVKVRPHISREIM---ESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAG 863
HV+VRP+ + I +S V+ + LN ++ PGL+DT +L K +A G
Sbjct: 129 HVRVRPYKEKPIQNQAKSVDVEYTVQFTPLNPDDDFRPGLKDTKLL--KTLAIG 180
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 39 IEETFKRL----VGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKH 86
I +TF ++ +GE+N PEE+F A DL+ +A S + L++ H
Sbjct: 344 IGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTH 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,098,507
Number of Sequences: 62578
Number of extensions: 1028364
Number of successful extensions: 2415
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2394
Number of HSP's gapped (non-prelim): 15
length of query: 868
length of database: 14,973,337
effective HSP length: 107
effective length of query: 761
effective length of database: 8,277,491
effective search space: 6299170651
effective search space used: 6299170651
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)