Query 002903
Match_columns 868
No_of_seqs 156 out of 811
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 13:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2352 Ppc Phosphoenolpyruvat 100.0 4E-254 8E-259 2151.4 83.7 813 1-868 79-910 (910)
2 PRK00009 phosphoenolpyruvate c 100.0 2E-236 4E-241 2097.0 89.6 814 1-868 79-911 (911)
3 PTZ00398 phosphoenolpyruvate c 100.0 2E-234 4E-239 2090.2 91.2 835 1-868 121-974 (974)
4 PF00311 PEPcase: Phosphoenolp 100.0 6E-236 1E-240 2078.1 63.5 774 63-868 1-794 (794)
5 PRK13655 phosphoenolpyruvate c 100.0 1.1E-82 2.5E-87 717.3 33.1 317 418-773 116-450 (494)
6 TIGR02751 PEPCase_arch phospho 100.0 2.7E-51 5.8E-56 463.4 27.0 282 420-741 117-427 (506)
7 PF14010 PEPcase_2: Phosphoeno 99.5 1.3E-12 2.7E-17 149.0 18.4 274 420-742 117-426 (491)
8 COG1892 Phosphoenolpyruvate ca 98.9 6.4E-08 1.4E-12 108.3 18.5 298 403-742 95-424 (488)
9 PF03328 HpcH_HpaI: HpcH/HpaI 96.5 0.011 2.3E-07 62.4 8.8 160 333-529 12-186 (221)
10 PRK10558 alpha-dehydro-beta-de 95.9 0.019 4.2E-07 62.3 7.5 158 335-533 33-216 (256)
11 TIGR03239 GarL 2-dehydro-3-deo 95.4 0.031 6.7E-07 60.4 6.9 157 336-533 27-209 (249)
12 TIGR01064 pyruv_kin pyruvate k 94.3 0.13 2.8E-06 60.6 8.5 111 413-545 177-294 (473)
13 PRK09206 pyruvate kinase; Prov 91.5 0.64 1.4E-05 54.8 8.7 99 413-532 178-276 (470)
14 PRK08187 pyruvate kinase; Vali 91.4 0.5 1.1E-05 56.0 7.8 112 424-547 325-438 (493)
15 PLN02623 pyruvate kinase 91.2 0.62 1.4E-05 56.0 8.2 87 427-532 295-381 (581)
16 PRK05826 pyruvate kinase; Prov 90.7 0.69 1.5E-05 54.5 7.9 96 416-532 182-277 (465)
17 PTZ00300 pyruvate kinase; Prov 89.8 1.1 2.3E-05 52.7 8.5 97 414-532 154-250 (454)
18 cd00288 Pyruvate_Kinase Pyruva 88.9 1.4 2.9E-05 52.3 8.5 88 426-532 190-277 (480)
19 TIGR01588 citE citrate lyase, 88.5 0.79 1.7E-05 50.7 6.0 97 424-530 86-189 (288)
20 PRK06354 pyruvate kinase; Prov 88.3 1.5 3.2E-05 53.3 8.5 97 414-532 185-282 (590)
21 PRK06247 pyruvate kinase; Prov 88.2 1.5 3.3E-05 51.7 8.3 94 414-532 180-273 (476)
22 TIGR02311 HpaI 2,4-dihydroxyhe 88.1 0.96 2.1E-05 49.0 6.2 97 425-532 86-209 (249)
23 PRK06739 pyruvate kinase; Vali 78.9 9.6 0.00021 43.5 9.4 99 413-532 171-269 (352)
24 PF00224 PK: Pyruvate kinase, 76.4 4.4 9.6E-05 46.1 5.9 89 426-533 192-280 (348)
25 PRK14725 pyruvate kinase; Prov 74.3 9.8 0.00021 46.2 8.1 108 427-547 448-555 (608)
26 PRK10128 2-keto-3-deoxy-L-rham 71.5 14 0.00029 40.8 7.9 71 452-533 144-216 (267)
27 PLN02765 pyruvate kinase 68.1 21 0.00046 42.9 9.0 86 428-531 225-310 (526)
28 COG1242 Predicted Fe-S oxidore 65.9 2.9 6.4E-05 46.0 1.3 13 645-657 114-126 (312)
29 PLN02461 Probable pyruvate kin 65.6 25 0.00054 42.2 9.0 87 427-532 211-297 (511)
30 PTZ00066 pyruvate kinase; Prov 62.5 27 0.00058 42.0 8.4 87 427-532 227-313 (513)
31 COG2301 CitE Citrate lyase bet 59.7 7.1 0.00015 43.3 2.9 100 423-535 80-184 (283)
32 PLN02762 pyruvate kinase compl 56.1 53 0.0011 39.5 9.4 89 427-532 220-308 (509)
33 PF02585 PIG-L: GlcNAc-PI de-N 55.5 33 0.00073 32.6 6.5 55 487-551 66-120 (128)
34 cd00480 malate_synt Malate syn 53.9 29 0.00063 41.7 6.9 109 412-530 172-303 (511)
35 PF01373 Glyco_hydro_14: Glyco 52.6 14 0.00031 42.8 3.9 73 453-542 5-84 (402)
36 TIGR01417 PTS_I_fam phosphoeno 46.4 31 0.00068 41.9 5.7 101 424-537 384-505 (565)
37 cd00727 malate_synt_A Malate s 44.9 44 0.00095 40.1 6.4 95 426-529 187-302 (511)
38 PRK09255 malate synthase; Vali 44.0 50 0.0011 39.9 6.7 94 426-528 208-322 (531)
39 PF12897 Aminotran_MocR: Alani 41.4 14 0.00031 42.6 1.6 63 423-485 343-421 (425)
40 TIGR01418 PEP_synth phosphoeno 39.4 53 0.0011 41.6 6.3 93 427-532 633-740 (782)
41 TIGR03191 benz_CoA_bzdO benzoy 39.4 2E+02 0.0043 34.0 10.6 133 55-194 125-272 (430)
42 PRK06464 phosphoenolpyruvate s 39.4 64 0.0014 40.9 7.0 93 427-532 640-747 (795)
43 PLN00197 beta-amylase; Provisi 39.3 27 0.00058 42.0 3.4 33 508-543 161-196 (573)
44 TIGR01344 malate_syn_A malate 39.2 35 0.00077 40.9 4.5 94 426-528 188-302 (511)
45 PLN02803 beta-amylase 38.9 28 0.0006 41.7 3.5 34 508-544 141-177 (548)
46 PF02526 GBP_repeat: Glycophor 37.8 25 0.00054 26.8 1.9 17 470-486 7-23 (38)
47 PLN02801 beta-amylase 37.3 30 0.00065 41.2 3.5 34 508-544 71-107 (517)
48 KOG3831 Uncharacterized conser 37.0 24 0.00052 35.5 2.2 48 461-522 61-108 (196)
49 PLN02905 beta-amylase 35.9 32 0.0007 41.9 3.4 34 508-544 320-356 (702)
50 PLN02705 beta-amylase 34.8 35 0.00075 41.5 3.4 32 508-542 302-336 (681)
51 PF12133 Sars6: Open reading f 34.7 14 0.0003 31.0 0.2 44 334-382 15-58 (62)
52 PLN02161 beta-amylase 33.6 38 0.00082 40.4 3.5 54 508-570 151-212 (531)
53 PLN02389 biotin synthase 32.5 1.4E+02 0.003 34.7 7.8 45 405-449 211-255 (379)
54 COG3294 HD supefamily hydrolas 32.4 42 0.00091 36.2 3.3 123 458-596 12-158 (269)
55 PRK10076 pyruvate formate lyas 32.1 3.4E+02 0.0073 28.9 10.1 139 300-459 17-167 (213)
56 PF04852 DUF640: Protein of un 32.1 85 0.0018 31.1 5.0 38 152-221 94-131 (132)
57 TIGR02493 PFLA pyruvate format 27.9 4.1E+02 0.0088 27.9 9.9 130 301-450 45-188 (235)
58 PF05524 PEP-utilisers_N: PEP- 27.6 1.3E+02 0.0028 28.6 5.6 51 720-771 54-105 (123)
59 PF08671 SinI: Anti-repressor 24.6 1E+02 0.0022 23.1 3.1 24 39-63 5-28 (30)
60 TIGR01093 aroD 3-dehydroquinat 23.8 2.5E+02 0.0053 29.9 7.4 45 402-448 130-174 (228)
61 TIGR01766 tspaseT_teng_C trans 20.2 1.6E+02 0.0035 25.8 4.3 37 499-535 42-78 (82)
No 1
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=3.8e-254 Score=2151.40 Aligned_cols=813 Identities=44% Similarity=0.751 Sum_probs=762.5
Q ss_pred CcchhhHHHHhHHHHHHHHHhhhcCCCCCcCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeecCCCcchhh
Q 002903 1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRR 80 (868)
Q Consensus 1 ~f~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rr 80 (868)
|++|+||||+.|..|+++. .... ....+||..++++| |+.|++++++.++|.++.|+|||||||||++||
T Consensus 79 f~~L~NiaEd~~~~~r~~~-~~~~--------~~~~~sL~~~~~~L-k~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~Rr 148 (910)
T COG2352 79 FLLLANIAEDYHRIRRRQI-HEAA--------GDSDGSLAATLKKL-KEQGLSPETVARALENLNVELVLTAHPTEVQRR 148 (910)
T ss_pred HhhhhhHHHHhhhHhhhhh-hhcc--------CCCcchHHHHHHHH-HhcCCCHHHHHHHHHhCceeEEEecCchHHHHH
Confidence 6899999999999976653 2111 22349999999999 899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002903 81 SLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVD 160 (868)
Q Consensus 81 tvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~eir~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~ 160 (868)
||++++++|..+|.+++...+++. ++.++++|++.|..+|||++||..||||.|||+||++||++|||++||++|++++
T Consensus 149 Tv~~~~~~I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~ 227 (910)
T COG2352 149 TVIDKQREINRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELN 227 (910)
T ss_pred HHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777666 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCCHHHH
Q 002903 161 TALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSM----WRCSDELR 236 (868)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~----~~~s~~l~ 236 (868)
.+++++++ ...|+.++|++|||||||||||||||||+||++++..+|++++++|..+|++|..+||+ ++||++|.
T Consensus 228 ~~~~~~~~-~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ 306 (910)
T COG2352 228 EALQETFG-ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELL 306 (910)
T ss_pred HHHHHhcc-cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHH
Confidence 99999875 44566678999999999999999999999999999999999999999999999999999 68999999
Q ss_pred HhHHHhhhhchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHH
Q 002903 237 HRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYR 316 (868)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~ 316 (868)
++++.-. +... .+.+||||++|.+|+.||.+|..++.+...+.. ......+|.+++||++||..|++
T Consensus 307 ala~~~~----d~~~--------~r~~EPYR~al~~i~~rL~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~ 373 (910)
T COG2352 307 ALAGESQ----DQSI--------RRADEPYRRALKYIRSRLMATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQ 373 (910)
T ss_pred HHHhcCc----cccc--------hhccccHHHHHHHHHHHHHHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHH
Confidence 9776522 1111 245899999999999999999988765543221 22335589999999999999999
Q ss_pred HHHhcCCccchhhHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHhHhcCCCCC
Q 002903 317 SLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIG-SYREWSEEKRQEWLLSELSGKRPL 395 (868)
Q Consensus 317 sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl 395 (868)
||.+||++.+|+|.|.+++++|++|||||++|||||||++|++||+||++++|++ +|.+|+|++|++||.+||.++|||
T Consensus 374 SL~~~G~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL 453 (910)
T COG2352 374 SLHACGMEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPL 453 (910)
T ss_pred HHHhcCCceeccchHHHHHHHHHhcCceeeccccccccchHHHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhC----CCCchhHHHhhcCCChhhHHHHHHHHHHcCCC----CCCccccccCChHHHh
Q 002903 396 FGPDLPKTEEIADVLETFHVIAEL----PADNFGAYIISMATAPSDVLAVELLQRECHVK----QPLRVVPLFEKLADLE 467 (868)
Q Consensus 396 ~~~~~~~s~~~~e~l~~f~~i~~~----~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~----~~l~VvPLFETi~DL~ 467 (868)
+++.+++|+.++++|+||++++++ |+++|++||||||+++||||||++|+||+|+. .+++|||||||||||+
T Consensus 454 ~p~~~~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~ 533 (910)
T COG2352 454 LPPFWQPSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLD 533 (910)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHh
Confidence 999999999999999999999975 57789999999999999999999999999997 7899999999999999
Q ss_pred cHHHHHHHHhccHHHHhhc---CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCC
Q 002903 468 AAPAALARLFSVDWYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGG 544 (868)
Q Consensus 468 ~a~~il~~Ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGG 544 (868)
||+.||++||++|+||+.| +|.||||||||||||||||++|||++|+||.+|+++|+++||+++|||||||||||||
T Consensus 534 na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGG 613 (910)
T COG2352 534 NAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGG 613 (910)
T ss_pred ccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCC
Confidence 9999999999999999999 3599999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhcCCCCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCC-CCCChhHHHHHHHHHHHHHHHH
Q 002903 545 GPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPP-ISPKPEWRTMMDEMAVIATEEY 623 (868)
Q Consensus 545 GPt~~aI~aqP~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~-~~~~~~~~~~m~~ls~~s~~~Y 623 (868)
||+|.||+|||||||+|+||+|||||||+.|||+|++|.||||.+++|+|++++.|+ +.|+++|+.+|+++|+.||++|
T Consensus 614 GPa~~AILsQP~gsv~g~iRiTEQGE~I~~Kyg~p~~A~~nLe~l~sAvLeAsllp~~~dp~~~~~~iMd~ls~~S~~~Y 693 (910)
T COG2352 614 GPAYAAILSQPPGSVKGRIRITEQGEMIAFKYGLPEVARRNLETLVSAVLEASLLPPKPDPKESWRAIMDELSDISCDAY 693 (910)
T ss_pred chHHHHHhcCCCcccCCceEeehhHHHHHHhhCChHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876 6777889999999999999999
Q ss_pred HHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCC-CCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCCC
Q 002903 624 RSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPS-GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIR 702 (868)
Q Consensus 624 r~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~-~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~ 702 (868)
|+|||++|+|++||+++|||.||++|||||||||||.. ++++|||||||||||||+|+|||||||+|+||+++++++|+
T Consensus 694 R~lV~~~pdFvdyF~~~TPi~EIs~LniGSRPA~Rk~~~~~ie~LRAIPWVFSWsQnR~mLP~WyG~Gsal~~~i~~g~~ 773 (910)
T COG2352 694 RGLVRENPDFVDYFRQATPIQEISKLNIGSRPASRKPTTGGIESLRAIPWVFSWTQNRLMLPAWYGVGSALQRFIEEGPE 773 (910)
T ss_pred HHHhcCCCcHHHHHHhcCcHHHHhcCCCCCCCcCCCCCCCccccccccchhhhhhhhhhcchhhhhhhHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999987 55999999999999999999999999999999999999988
Q ss_pred cHHHHHHHHhcCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHhCCCCcccCCch
Q 002903 703 NLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLW-SFGEKLRVNYEETKGLLLQIAGHKDLLEGDPY 781 (868)
Q Consensus 703 ~~~~L~~my~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~l~~d~~~~-~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~ 781 (868)
+.+.|++||++||||+++|+||+|||+|+||.||.+|+++++|+++. ++|+.|++||+.|+++|+.|+|+++||+++|+
T Consensus 774 ~~~~L~~m~~~WPFF~s~Lsn~emvlaKsd~~iA~~Y~qll~d~~~~~~lf~~i~~e~~~T~~~vl~I~~~~~LL~d~p~ 853 (910)
T COG2352 774 NLALLRDMYQNWPFFSSRLSNMEMVLAKSDLWLAEHYAQLLVDPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPW 853 (910)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhcCCHH
Confidence 89999999999999999999999999999999999999999999965 89999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCccchhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHH
Q 002903 782 LKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIA 861 (868)
Q Consensus 782 l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lTIngIA 861 (868)
|++||.+||||+||||++|||||+|+|+...+ + . .+.++++|++||||||
T Consensus 854 La~Si~lRn~Y~dPLn~LQvELLkR~R~~~~~---------~--~-------------------~~~~er~i~lTInGIA 903 (910)
T COG2352 854 LAESIALRNPYLDPLNVLQVELLKRSRQSKRG---------D--P-------------------DPEVERALLLTINGIA 903 (910)
T ss_pred HHHHHHHhccccChhHHHHHHHHHHHhhcccC---------C--C-------------------CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999964310 0 0 2669999999999999
Q ss_pred hhhccCC
Q 002903 862 AGLQNTG 868 (868)
Q Consensus 862 aGlrnTG 868 (868)
|||||||
T Consensus 904 aGlRNTG 910 (910)
T COG2352 904 AGLRNTG 910 (910)
T ss_pred HhhccCC
Confidence 9999999
No 2
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.8e-236 Score=2097.05 Aligned_cols=814 Identities=45% Similarity=0.773 Sum_probs=754.0
Q ss_pred CcchhhHHHHhHHHHHHHHHhhhcCCCCCcCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeecCCCcchhh
Q 002903 1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRR 80 (868)
Q Consensus 1 ~f~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rr 80 (868)
||+|+|||||+|++|++|. ....+ .+.++||+.++.+| +++|+++++|+++|+++.|+|||||||||++||
T Consensus 79 ~~~L~NiAEe~~~~r~~r~-~~~~~-------~~~~~sl~~~~~~l-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~Rr 149 (911)
T PRK00009 79 FLNLANIAEDYHHIRRRRE-HASGS-------QPQPGSLAETLRRL-KAAGVSPEELARALEELDIEPVLTAHPTEVQRR 149 (911)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhccC-------CCCCCcHHHHHHHH-HHcCCCHHHHHHHHhhCcceeeeecCCcccchH
Confidence 7999999999999988775 22222 25679999999999 799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002903 81 SLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVD 160 (868)
Q Consensus 81 tvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~eir~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~ 160 (868)
|||++|++|+.+|.++|+..+|+.|+++++++|+++|+.||||+++|++||||.||++||++||+++||++||.+|++++
T Consensus 150 tvL~~~~~I~~~L~~~d~~~~t~~e~~~~~~~l~~~i~~LW~T~eiR~~KPtv~DE~~~gl~y~~~~l~~aiP~~~~~l~ 229 (911)
T PRK00009 150 TLLDKQREIAALLRQLDDVDLTPRERAKIERRLRRLIAQLWQTDEIRQFRPTVVDEIKNGLAYYENSLWQAVPKLYRELE 229 (911)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhCcchhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCCHHHH
Q 002903 161 TALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSM----WRCSDELR 236 (868)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~----~~~s~~l~ 236 (868)
++|..+++ ..+|..+++|+|||||||||||||||||+||++|+.++|++|+++|+++|++|.++||+ ..||+++.
T Consensus 230 ~al~~~~~-~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~Y~~~l~~L~~~LS~S~~~~~~s~~l~ 308 (911)
T PRK00009 230 EALEEHFG-LQLPLDAAPLRFGSWIGGDRDGNPNVTAEVTREVLLLQRWVALDLYLKELHALGSELSMSTRLVEVSPELR 308 (911)
T ss_pred HHHHHhcC-ccCCCCCceeeeccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHH
Confidence 99999863 44555568999999999999999999999999999999999999999999999999999 68999998
Q ss_pred HhHHHhhhhchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHH
Q 002903 237 HRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYR 316 (868)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~ 316 (868)
++.+.... . ...+++||||++|..|++||.+|......... +....+...+|.+++||++||..|++
T Consensus 309 ~l~~~~~~----~--------~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~-~~~~~~~~~~Y~~~~ell~dL~~i~~ 375 (911)
T PRK00009 309 ALAGASPD----Q--------SPHRRDEPYRRALKGIRARLAATADWLEARLA-GEEAPPPADPYASAEELLADLDLIYQ 375 (911)
T ss_pred HHhhcccc----c--------ccccCCCcHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCcccccCCCHHHHHHHHHHHHH
Confidence 75543211 1 12356899999999999999999987654332 11111123479999999999999999
Q ss_pred HHHhcCCccchhhHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCC
Q 002903 317 SLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLF 396 (868)
Q Consensus 317 sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~ 396 (868)
||.++|++.+|+|.|.+||++|++||||||+|||||||++|++||+||++++|+++|.+|||++|++||.++|.++||++
T Consensus 376 SL~~~~~~~~A~~~L~~lir~v~~FGfhla~LDiRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~ 455 (911)
T PRK00009 376 SLRACGMGILANGRLLDLLRRVEVFGFHLARLDIRQESSRHEDAVAELTRYLGLGDYASLSEAEKQAFLLRELNSRRPLI 455 (911)
T ss_pred HHHhCCCccchhhHHHHHHHHHHhhCcccCCcccccChHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999879999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH----HHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCC------CCccccccCChHHH
Q 002903 397 GPDLPKTEEIADVLETFHV----IAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQ------PLRVVPLFEKLADL 466 (868)
Q Consensus 397 ~~~~~~s~~~~e~l~~f~~----i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~------~l~VvPLFETi~DL 466 (868)
++...+|+++.+++++|.+ ++.+++++|++||||||+++||||+|++|+|++|+.. +++|||||||++||
T Consensus 456 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL 535 (911)
T PRK00009 456 PPNWEYSELTSKELAEFLAARRLIAEFGAEAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDL 535 (911)
T ss_pred CcccccChhhHHHHHHHHHHHHHHHHhCchhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHH
Confidence 9988786666666555554 5566899999999999999999999999999999853 89999999999999
Q ss_pred hcHHHHHHHHhccHHHHhhc---CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCC
Q 002903 467 EAAPAALARLFSVDWYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRG 543 (868)
Q Consensus 467 ~~a~~il~~Ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRG 543 (868)
+|||+||++||++|+||+|+ ++.|||||||||||||||+++|+|+||+||++|+++|++|||+++||||||||||||
T Consensus 536 ~~a~~il~~l~~~p~yr~~l~~~~~~qeVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RG 615 (911)
T PRK00009 536 RNAADVMRQLLSLPWYRGLIAGRGNLQEVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRG 615 (911)
T ss_pred HhHHHHHHHHHcChHHHHHHhcCCCeEEEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCC
Confidence 99999999999999999999 468999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhcCCCCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHH
Q 002903 544 GGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEY 623 (868)
Q Consensus 544 GGPt~~aI~aqP~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Y 623 (868)
|||+|+||+||||||++|+||+|||||||++|||+|.+|.+|||++++|+|++++.+++++.++|+++|+.||+.|+++|
T Consensus 616 Ggp~~~ai~~qp~g~~~g~iR~TeQGEvI~~kY~~~~~a~~nLE~~~~a~l~~~~~~~~~~~~~~~~~m~~ls~~s~~~Y 695 (911)
T PRK00009 616 GGPAYAAILSQPPGSVKGRIRVTEQGEVIRSKYGLPEVARRNLELLTAATLEASLLPPPEPKPEWREIMDELSDRSCKAY 695 (911)
T ss_pred CChHHHHHHhCCCccccCceEEEeechhHHHhcCChHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987655567889999999999999999
Q ss_pred HHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhC-CC
Q 002903 624 RSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKD-IR 702 (868)
Q Consensus 624 r~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~-~~ 702 (868)
|++|+++|+|++||+++||+.+|+.|||||||+||+++++++|||||||||||||+|+++|||||+|+||+++++++ ++
T Consensus 696 r~lv~~~~~F~~yf~~~tP~~e~~~l~IGSRP~~R~~~~~i~~lRAIPwvfsW~Q~R~~lP~w~G~Gsal~~~~~~~~~~ 775 (911)
T PRK00009 696 RGLVRENPDFVDYFRAATPIQEIGKLNIGSRPASRKPTGGIESLRAIPWVFSWSQNRLMLPGWYGVGSALQAAIDDEPPG 775 (911)
T ss_pred HHHHhcCCCHHHHHHHhChHHHHHhccccCCCCCCCCCCCccccccchhhhhHHhhhccchHHhhHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999999773 34
Q ss_pred cHHHHHHHHhcCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhHH-HHHHHHHHHHHHHHHHHHHhCCCCcccCCch
Q 002903 703 NLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWS-FGEKLRVNYEETKGLLLQIAGHKDLLEGDPY 781 (868)
Q Consensus 703 ~~~~L~~my~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~l~~d~~~~~-i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~ 781 (868)
+++.||+||++||||+++|||++|+|+||||.||++|+++|+|++++. ||++|++||++|+++|++|||+++||+++|+
T Consensus 776 ~~~~L~~my~~WPFF~~~ldn~em~LaKaD~~Ia~~Y~~ll~d~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~ 855 (911)
T PRK00009 776 RLALLREMYQDWPFFRTLLSNLEMVLAKADLNIAERYAQLLVDKELRPRLFERIRDELELTIKVVLAITGQDELLADNPW 855 (911)
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChH
Confidence 789999999999999999999999999999999999999999999885 9999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCccchhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHH
Q 002903 782 LKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIA 861 (868)
Q Consensus 782 l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lTIngIA 861 (868)
+++||++|||||||||++||+||+|+|+.+. + + .+.+.++|++||||||
T Consensus 856 l~~si~~R~pyvdpLn~lQvelL~r~R~~~~----------~--~-------------------~~~l~~~l~~TInGIA 904 (911)
T PRK00009 856 LARSIRLRNPYLDPLNHLQVELLKRLRAQEG----------D--P-------------------DEEVERAIHLTINGIA 904 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------C--C-------------------CHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997421 0 1 2669999999999999
Q ss_pred hhhccCC
Q 002903 862 AGLQNTG 868 (868)
Q Consensus 862 aGlrnTG 868 (868)
|||||||
T Consensus 905 aGlrNTG 911 (911)
T PRK00009 905 AGLRNTG 911 (911)
T ss_pred HHhccCC
Confidence 9999999
No 3
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=1.9e-234 Score=2090.16 Aligned_cols=835 Identities=44% Similarity=0.740 Sum_probs=762.0
Q ss_pred CcchhhHHHHhHHHHHHHHHhhhcCCCCCcCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeecCCCcchhh
Q 002903 1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRR 80 (868)
Q Consensus 1 ~f~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rr 80 (868)
||+|+|||||+|++|++|. ..+.+... ..+.++||+.++.+| +++|+++++|+++|+++.|+|||||||||++||
T Consensus 121 ~~~L~NiAE~~~~~r~~r~-~~~~~~~~---~~~~~~sl~~~l~~L-~~~g~~~e~i~~~L~~~~i~pVlTAHPTE~~Rr 195 (974)
T PTZ00398 121 MCVLSNYAEWAHRIRRRRA-FERSFTDN---DRIFTESLKNTIEML-LQAGFDKEEIYKQLCNQEIDLVLTAHPTQAQRI 195 (974)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhcccccc---CCCccCcHHHHHHHH-HHcCCCHHHHHHHHhcCceeeeeccCCccccHH
Confidence 6999999999999988775 22211000 125689999999999 799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002903 81 SLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVD 160 (868)
Q Consensus 81 tvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~eir~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~ 160 (868)
|||+||++|+.+|.++|+.++|+.|++++.++|+++|+.||||+++|+.||||.||++|||+||++|||++||.+|++++
T Consensus 196 TvL~~~~~I~~~L~~ld~~~~t~~e~~~~~~~L~~~I~~LW~TdeiR~~KPtv~DE~~~gl~y~~~sl~~aiP~~~~~l~ 275 (974)
T PTZ00398 196 SVLKNCQRLGELLLSLDNTDLTPFEIKDLKKNLQRLLAMLWKTDTIRRAKPTPLDEAQNLINTIENTIFDALPNFIRYID 275 (974)
T ss_pred HHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhCcchhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCHHHHHhHH
Q 002903 161 TALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240 (868)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~~~~s~~l~~~~~ 240 (868)
++|.++|. +.+|..+++|+|||||||||||||||||+||++|+.++|++|+++|+++|++|+++||++.||+++.++.+
T Consensus 276 ~al~~~~~-~~~~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~L~~~~~ 354 (974)
T PTZ00398 276 NVLYEYNL-DPLPPTKKLFTFSSWVGGDRDGNPFVTAEVTRQVVYFNRIRACELFIHMIEKLMYDLPLKSCTEKLKEYVD 354 (974)
T ss_pred HHHHHhcC-CCCCCCCCceeccCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHh
Confidence 99999864 34555678999999999999999999999999999999999999999999999999999999999998765
Q ss_pred Hhhh-hc--------hhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCccCCCCChHHhhh
Q 002903 241 VLHR-SS--------KKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISD--IPEEAVFTNVEQFLE 309 (868)
Q Consensus 241 ~~~~-~~--------~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~--~~~~~~y~~~~ell~ 309 (868)
...+ .. +...+. +.....++||||++|..|++||.+|+.++...+.....+ ......|.+++||++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~~~Y~~~~ell~ 431 (974)
T PTZ00398 355 NLPDEISFYITDKDATYLLRE---FMGFIPEKELYRRALLHVRAKLIATRDYYKDLISNHSVDPEFRRELAYHSTDEILE 431 (974)
T ss_pred hhhhhhccccccchhhhhhhh---hcccCCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 5321 00 001111 000112689999999999999999998775432211000 112346999999999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHh
Q 002903 310 PLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSEL 389 (868)
Q Consensus 310 dL~~i~~sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL 389 (868)
||..|++||++||+..+|+|.|.+|||+|++||||||+|||||||++|++||+||++++|+++|.+|||++|++||.++|
T Consensus 432 dL~~i~~SL~~~g~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~Y~~l~E~er~~~L~~eL 511 (974)
T PTZ00398 432 PLIECYNSLEDVGNTILARGRLLDVIRQVKTFGLHLMKLDIRQESSKHEKAMDEICEYLGLGNYSELSEEEKQDFLLDIL 511 (974)
T ss_pred HHHHHHHHHHHCCChhhHhhHHHHHHHHHHHhCccccccccccCcHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHH
Q 002903 390 SGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVK---QPLRVVPLFEKLADL 466 (868)
Q Consensus 390 ~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~---~~l~VvPLFETi~DL 466 (868)
.++||++++..++|++++++|+||++++++++++||+||||||+++||||+|++|+|++|+. ++|+|||||||++||
T Consensus 512 ~~~rpl~~~~~~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL 591 (974)
T PTZ00398 512 PSKRPLIPHDLNWPSEVNEVLDTFKVCSELENEALGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESL 591 (974)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHccccccceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998863 689999999999999
Q ss_pred hcHHHHHHHHhccHHHHhhc----CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCC
Q 002903 467 EAAPAALARLFSVDWYRNRI----NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGR 542 (868)
Q Consensus 467 ~~a~~il~~Ll~~p~yr~~l----~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgR 542 (868)
+||+.||++||++|+||+|+ +++|||||||||||||||+++|+|+||+||++|+++|++|||+++|||||||||||
T Consensus 592 ~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgR 671 (974)
T PTZ00398 592 NSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSR 671 (974)
T ss_pred HhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Confidence 99999999999999999999 56899999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCCCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCCCCC-ChhHHHHHHHHHHHHHH
Q 002903 543 GGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISP-KPEWRTMMDEMAVIATE 621 (868)
Q Consensus 543 GGGPt~~aI~aqP~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~~~~-~~~~~~~m~~ls~~s~~ 621 (868)
||||+|+||+|||+|+++|.+|+|||||||++|||+|++|.+|||++++|++++++.+++.+ .++|+++|+.||+.|++
T Consensus 672 GGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~~~~~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~ 751 (974)
T PTZ00398 672 GGGPQHLAILSQPPNTIKSYLRITIQGETITQNFGLKGICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMK 751 (974)
T ss_pred CCCChHHHHhcCCCccccCeeEEeeechhhHHhcCChHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765555 77899999999999999
Q ss_pred HHHHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCC
Q 002903 622 EYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDI 701 (868)
Q Consensus 622 ~Yr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~ 701 (868)
+||++|+++|+|++||+++||+.+|+.|||||||+||+ ..+++|||||||||||||+|++||+|||+|+||+++++++
T Consensus 752 ~Yr~lv~~~~~fv~yf~~atP~~e~~~L~iGSRP~~R~-~~~i~~LRAIPwvfaW~Q~r~~LP~w~G~G~al~~~~~~~- 829 (974)
T PTZ00398 752 EYRKVVRENPDFVPYFRSVTPEKEIGELNIGSRPSKRK-EGGIETLRAIPWVFAWTQNRLHLPVWLGLEDALEELKKKG- 829 (974)
T ss_pred HHHHHHhcCCCHHHHHHHhChHHHHHhcccCCCCCCCC-CCCCCcccccchhhHHHhccCCchHHHhHHHHHHHHHhcC-
Confidence 99999999999999999999999999999999999997 4789999999999999999999999999999999999765
Q ss_pred CcHHHHHHHHhcCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCch
Q 002903 702 RNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPY 781 (868)
Q Consensus 702 ~~~~~L~~my~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~l~~d~~~~~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~ 781 (868)
+++.|++||++||||+++|||++|+|+||||.||++|+++++|+++++||++|++||++|+++|++|||+++||+++|+
T Consensus 830 -~~~~L~~m~~~wpff~~~l~~~~m~LaKaDl~IA~~Y~~~l~~~~~~~i~~~I~~E~~~T~~~ll~itg~~~Ll~~~p~ 908 (974)
T PTZ00398 830 -KLNLIADMYKNWPFCKSFFNLVSMVLLKTDVQITEEYNKMLVPEQLQYIGNLLRNKLKKTTNLILLVTKEKQLLDNDIV 908 (974)
T ss_pred -hHHHHHHHHHhCHHHHHHHhHHHHHHHccCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccChH
Confidence 7999999999999999999999999999999999999989999988899999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCccchhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHH
Q 002903 782 LKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIA 861 (868)
Q Consensus 782 l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lTIngIA 861 (868)
+++||++|||||||||++||+||+|+|+.+.... + ++ ..++++.+.++++|++||||||
T Consensus 909 l~~Si~~R~pyvdpLn~lQvelL~r~R~~~~~~~-------~--~~------------~~~~~~~~~l~~~l~~TInGIA 967 (974)
T PTZ00398 909 TKRSILLRFKWVAPCNLIQIEALKRLRKINDSTY-------D--ED------------TKNEIEDTSLEDALIISIKAIA 967 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------c--cc------------ccccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995321000 0 00 0000113679999999999999
Q ss_pred hhhccCC
Q 002903 862 AGLQNTG 868 (868)
Q Consensus 862 aGlrnTG 868 (868)
|||||||
T Consensus 968 aGlrNTG 974 (974)
T PTZ00398 968 AGMQNTG 974 (974)
T ss_pred HHcccCC
Confidence 9999999
No 4
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=100.00 E-value=6.2e-236 Score=2078.12 Aligned_cols=774 Identities=47% Similarity=0.786 Sum_probs=640.6
Q ss_pred cCceeEeeecCCCcchhhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHHH
Q 002903 63 NQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMS 142 (868)
Q Consensus 63 ~~~i~pVlTAHPTEa~RrtvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~eir~~kPtv~DE~~~~l~ 142 (868)
++.|+|||||||||++|||||++|++|+.+|.++|+.++|+.|+.+++++|+++|+.||||+++|.+||||.||++|||+
T Consensus 1 ~l~i~pVlTAHPTEa~RrtvL~~~~~I~~lL~~~d~~~lt~~e~~~~~~~L~~~I~~LWqT~eiR~~KPtv~DE~~~~L~ 80 (794)
T PF00311_consen 1 ELEIEPVLTAHPTEAKRRTVLDKHRRIAELLDQLDNPDLTPRERAELEERLRREITALWQTDEIRREKPTVLDEARNGLY 80 (794)
T ss_dssp --EEEEEEE--TT--SSCHHHHHHHHHHHHHHHCT-TT--HHHHHHHHHHHHHHHHHHHCS--C-SS---HHHHHHHHHH
T ss_pred CceEEEEeccCCCcCcHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCccccccCCChHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002903 143 YFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDL 222 (868)
Q Consensus 143 y~~~~l~~avP~~~~~l~~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L 222 (868)
||+++||++||.+|+++++++.++|++...+ .+|+|+|||||||||||||||||+||++|+.++|++|+++|++++++|
T Consensus 81 y~~~~l~~aiP~l~~~l~~al~~~~~~~~~~-~~~~i~fGSWiGGDRDGNP~VTa~vT~~~l~~~r~~al~~y~~~l~~L 159 (794)
T PF00311_consen 81 YFENSLFDAIPQLYRRLERALREHYPDPRLP-VPPFIRFGSWIGGDRDGNPFVTAEVTREALRLQREAALRLYLRELDEL 159 (794)
T ss_dssp HHCCTCCCCHHHHHHHHHHHHHCCTS-S----T--SEEEEE-TTTB-TT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCC-CCCeeEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998633333 479999999999999999999999999999999999999999999999
Q ss_pred HhhccC----ccCCHHHHHhHHHhhhhchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 002903 223 MFEMSM----WRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEE 298 (868)
Q Consensus 223 ~~~LS~----~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~ 298 (868)
.++||+ .++|+++.+.++...+..+..... ...++++||||++|..|++||.+|+.......... .....
T Consensus 160 ~~~LS~S~~~~~~s~~L~~~l~~~~~~~~~~~~~----~~~~~~~EPYR~~l~~i~~RL~at~~~~~~~~~~~--~~~~~ 233 (794)
T PF00311_consen 160 RRELSLSDRRVPVSDELRARLEDDREALPEVAEE----FSRRNPDEPYRRKLRLIRARLEATLRRLEAGLSGR--ADPAA 233 (794)
T ss_dssp HHH-------S---HHHHHCCHCCCH---TT-SS----SS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHTS--SS-ST
T ss_pred HHHHHHhhcccccHHHHHHHHhhccccccccccc----ccccccccHHHHHHHHHHHHHHHHHHHHhhccccc--CCCcc
Confidence 999999 478999988766533322222111 13457799999999999999999998766554322 12235
Q ss_pred CCCCChHHhhhHHHHHHHHHHhcCCccchhhHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCC-CCCCCC
Q 002903 299 AVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIG-SYREWS 377 (868)
Q Consensus 299 ~~y~~~~ell~dL~~i~~sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~-~Y~~l~ 377 (868)
.+|.+++||++||..|++||.++++..+|++.|.+||++|++||||||+|||||||++|++||++|++++|++ +|.+|+
T Consensus 234 ~~Y~~~~Ell~dL~~i~~SL~~~g~~~lA~~~L~~lir~V~~FGfhLa~LDIRQnS~~H~~av~el~~~~g~~~~Y~~l~ 313 (794)
T PF00311_consen 234 EAYRSAEELLADLRLIRDSLIANGAERLADGRLRDLIRQVETFGFHLASLDIRQNSTVHEEAVAELLRHAGIPDDYAELS 313 (794)
T ss_dssp TS--SHHHHHHHHHHHHHHHHHTT-HCCCTTHHHHHHHHHHHCTTTSSEEEEEEECHHHHHHHHHHHHCCTS---CCCS-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHCCCchHHHhhHHHHHHHHhccCcceecccccccHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999994 899999
Q ss_pred HHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhC----CCCchhHHHhhcCCChhhHHHHHHHHHHcCCC--
Q 002903 378 EEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAEL----PADNFGAYIISMATAPSDVLAVELLQRECHVK-- 451 (868)
Q Consensus 378 E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~----~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~-- 451 (868)
|++|+++|.++|+++||+.+++.++|+++++++++|++++++ |+++|++||||||+++||||+|++|+|++|+.
T Consensus 314 e~~r~~~L~~eL~~~rpl~~~~~~~~~~~~~~l~~f~~~~~~~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~ 393 (794)
T PF00311_consen 314 EEERIALLTRELKSPRPLIPPFAPLSEETREVLDTFRVIAEIQKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLADG 393 (794)
T ss_dssp HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS-----CCCEEEEEECT--SCHHHHHHHHHHHCTT---S
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999987 57999999999999999999999999999994
Q ss_pred ----CCCccccccCChHHHhcHHHHHHHHhccHHHHhhc---CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHH
Q 002903 452 ----QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAK 524 (868)
Q Consensus 452 ----~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~ 524 (868)
++|+||||||||+||+|||.||++||++|+||+|| +++||||||||||||||||++|||+||+||++|++||+
T Consensus 394 ~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~ 473 (794)
T PF00311_consen 394 GDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVAR 473 (794)
T ss_dssp S---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999 56999999999999999999999999999999999999
Q ss_pred HhCCeEEEecCCCCCCCCCCCchhhhhhcCCCCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCCCCC
Q 002903 525 QYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISP 604 (868)
Q Consensus 525 ~~gV~l~~FHGRGGsvgRGGGPt~~aI~aqP~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~~~~ 604 (868)
+|||+++|||||||||||||||+|+||+|||+||++|+||+|||||||++|||+|++|.||||++++|++++++.++..+
T Consensus 474 ~~gV~l~~FHGRGGsvgRGGGp~~~ai~aqP~gtv~g~ir~TeQGEvI~~ky~~~~~A~~~LE~~~~a~l~~~~~~~~~~ 553 (794)
T PF00311_consen 474 KHGVKLRFFHGRGGSVGRGGGPTHRAILAQPPGTVNGRIRITEQGEVISAKYGNPEIAQRNLEQLTAAVLEASLRPPPEP 553 (794)
T ss_dssp CCT-EEEEEEESSTCGGCTHHHHHHHHHTS-TTTTTTEEEEEEECHHHHHHHSSHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HcCCeEEEEeCCCCcccCCCChHHHHHHhCCCCccCCceEEeechHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999866555
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccc
Q 002903 605 K-PEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHL 683 (868)
Q Consensus 605 ~-~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~l 683 (868)
. ++|+++|++||+.|+++||+|||++|+|++||+++|||+||+.||||||||||++..+++|||||||||||||+|++|
T Consensus 554 ~~~~~~~~m~~ls~~s~~~Yr~Lv~~~p~F~~yf~~aTPi~ei~~lnIGSRPa~R~~~~~l~dLRAIPWVFsWtQ~R~~l 633 (794)
T PF00311_consen 554 PPPEWRELMEELSEASFKAYRALVYENPGFLEYFRQATPIDEIGKLNIGSRPAKRKGERSLEDLRAIPWVFSWTQSRFNL 633 (794)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHS-HHHHHHCS-SSS---------GCTS-CHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHhcCHHHHHHhccccCCCccCCCCCCCCcCCcCceeeeeecccccc
Confidence 5 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhCCCcHHHHHHHHhcCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhh-HHHHHHHHHHHHHH
Q 002903 684 PVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDL-WSFGEKLRVNYEET 762 (868)
Q Consensus 684 PgWyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~l~~d~~~-~~i~~~I~~E~~~T 762 (868)
|||||+||||++++.+++++++.||+||++||||+++|||++|+|+||||.||++|+++++|+++ .+||+.|++||++|
T Consensus 634 pgWyG~Gsal~~~~~~~~~~~~~L~~my~~wpfF~~~idn~~m~laK~d~~ia~~Y~~l~~~~~~~~~i~~~i~~E~~~T 713 (794)
T PF00311_consen 634 PGWYGVGSALEEFIQEDPGGLEQLQEMYREWPFFRTLIDNVEMSLAKADMDIAKRYAELVPDKELRQRIFEQIRDEYERT 713 (794)
T ss_dssp HHCTTHHHHHHHHHHCTTCCHHHHHHHHHH-HHHHHHHHHHHHHHCC--HHHHHHCHHHCS-CC-CHHHHHHHHHHHHHH
T ss_pred ceeecccHHHHHHHccCcchHHHHHHHHhcCcHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999999999999999999999999999999999984 58999999999999
Q ss_pred HHHHHHHhCCCCcccCCchHHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCccchhhhhcccCCchhHHhhhccC
Q 002903 763 KGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLS 842 (868)
Q Consensus 763 ~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (868)
+++|++|||+++||+++|+|++||++|||||||||++||+||+|+|+.+.+.. .+
T Consensus 714 ~~~~l~itg~~~ll~~~p~l~~si~~R~pyv~pLn~~Qv~lL~r~R~~~~~~~-------------------------~~ 768 (794)
T PF00311_consen 714 KEMLLAITGQKELLDNNPVLQRSIQLRNPYVDPLNYLQVELLKRLREGDDQQP-------------------------AD 768 (794)
T ss_dssp HHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------------------------TT
T ss_pred HHHHHHHhCCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-------------------------cC
Confidence 99999999999999999999999999999999999999999999998642100 01
Q ss_pred CCCCcchHHHHHHHHHHHHhhhccCC
Q 002903 843 SEYAPGLEDTLILTMKGIAAGLQNTG 868 (868)
Q Consensus 843 ~~~~~~~~~al~lTIngIAaGlrnTG 868 (868)
+++.+.+.++|++|||||||||||||
T Consensus 769 ~~~~~~~~~~l~~tingIAaglrnTG 794 (794)
T PF00311_consen 769 PEEDERLEDALLLTINGIAAGLRNTG 794 (794)
T ss_dssp -SS-CCHHHHHHHHHHHHHHHHT---
T ss_pred cccchHHHHHHHHHHHHHHHHcccCC
Confidence 11247799999999999999999999
No 5
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=100.00 E-value=1.1e-82 Score=717.32 Aligned_cols=317 Identities=21% Similarity=0.233 Sum_probs=276.1
Q ss_pred hCCCCchhHHHhhcCCChhhHHHHHHHHHHcC--CC----------CCCccccccCChHHHhcHHHHHHHHhccHHHHhh
Q 002903 418 ELPADNFGAYIISMATAPSDVLAVELLQRECH--VK----------QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNR 485 (868)
Q Consensus 418 ~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~G--l~----------~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~ 485 (868)
..++++|+.||||||+++||||+|++|+|++| +. +.|+|||||||++||.||++||++||++|.++.
T Consensus 116 ~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~- 194 (494)
T PRK13655 116 SFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHG- 194 (494)
T ss_pred hcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcC-
Confidence 44689999999999999999999999999998 52 479999999999999999999999999976653
Q ss_pred cCCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCc--hhhhhhcCCCCcccCce
Q 002903 486 INGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGP--THLAILSQPPDTIHGSL 563 (868)
Q Consensus 486 l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGP--t~~aI~aqP~gtv~g~i 563 (868)
+.|||||||||||||||+++|+|+||+||++|+++|+++||++++|||||||||||||| ++++|++||+ |.+
T Consensus 195 --~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhGrGg~~~RGGgpp~~~~ail~q~~----g~~ 268 (494)
T PRK13655 195 --KYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPILGVGSLPFRGHLSPENLENVLEEYP----GVY 268 (494)
T ss_pred --CeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCCChHHHHHHHhCCC----CCe
Confidence 78999999999999999999999999999999999999999999999999999999998 8899999997 669
Q ss_pred EeeccchhhHhhcCChhHHHHHHHHHHHHH---HHccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhh
Q 002903 564 RVTVQGEVIEQSFGEEHLCFRTLQRFTAAT---LEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLA 640 (868)
Q Consensus 564 rvTeQGEvI~~kYg~~~~A~r~LE~~~aa~---l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~a 640 (868)
|+|||| +.||+.|. |++++|+ +++...++..++++|+++|+.+++.|+++||++|+++|+|++||+++
T Consensus 269 r~TeQg---a~rY~~~~------e~~~~av~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~~V~~~~~fv~yf~~~ 339 (494)
T PRK13655 269 TFTVQS---AFRYDYPY------EEVKKAIEEINEKLIAPPRILSEEDKEELLEIIEKYSERYQSQIEKLADTINRVAKL 339 (494)
T ss_pred EEEecc---ccccCCCH------HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHc
Confidence 999999 49999996 4444444 47776666777899999999999999999999999999999999999
Q ss_pred CchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCCCcHHHHHHHHhcCchHHHH
Q 002903 641 TPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT 720 (868)
Q Consensus 641 TPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~~ 720 (868)
||..+++.|||||||+||+. +++++||||||||||+|+| ++|+|||+|+||+.++++ +++.|.++|..
T Consensus 340 tP~~r~r~L~iGsrp~~R~~-~gie~lRAIpwvfAw~q~r-~~P~wlG~g~aL~~~~~~---~ld~l~~~yp~------- 407 (494)
T PRK13655 340 IPKRRDRKLHIGLFGYSRSV-GGVSLPRAISFTGALYSIG-LPPELIGAGRLLELAKED---DLDILLENYPN------- 407 (494)
T ss_pred CcHHHHhhccccCCCCCCCC-CCCCCCCccCchhhhhhCC-CChHHHhHHHHHHHHHHh---HHHHHHHHhhh-------
Confidence 99999999999999999995 7799999999999999999 999999999999998874 48999998876
Q ss_pred HHHHHHHHHhccHHHHHHHHhccCChhhHHH-HHHHHHHHHHHHHHHHHHhCCC
Q 002903 721 IDLVEMVFAKGNHKIAALYDQLLVSKDLWSF-GEKLRVNYEETKGLLLQIAGHK 773 (868)
Q Consensus 721 idnvem~LaKaD~~Ia~~Y~~l~~d~~~~~i-~~~I~~E~~~T~~~vl~itg~~ 773 (868)
.|.|+..|.+|.+.- .+..+ -+.+.+|.....+.+.++.|-+
T Consensus 408 --------l~~dl~~a~~y~n~~---~~~~~~~~~~~~~~~~di~~~~~~~~~~ 450 (494)
T PRK13655 408 --------LKKDLEFAARFFNPE---VAEKLIDEETIAEIKEDIDEAKEILGLE 450 (494)
T ss_pred --------HHHHHHHHHHhcCHH---HHHHhccchhHHHHHHHHHHHHHHhCCC
Confidence 666777777666421 11111 1223456666666677776653
No 6
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=100.00 E-value=2.7e-51 Score=463.44 Aligned_cols=282 Identities=21% Similarity=0.273 Sum_probs=234.2
Q ss_pred CCC--chhHHHhhcCCChhhHHHHHHHHHHcCC---------------------CCCCccccccCChHHHhcHHHHHHHH
Q 002903 420 PAD--NFGAYIISMATAPSDVLAVELLQRECHV---------------------KQPLRVVPLFEKLADLEAAPAALARL 476 (868)
Q Consensus 420 ~~~--a~g~yIISmt~s~sDvL~V~~L~ke~Gl---------------------~~~l~VvPLFETi~DL~~a~~il~~L 476 (868)
+.. .|--.|||||+++||||+|+.|+|++|+ .+.|+|||||||++||.||++||+++
T Consensus 117 ~~~~~pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~ 196 (506)
T TIGR02751 117 DERIAPIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEY 196 (506)
T ss_pred CCCCCceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHH
Confidence 445 7778899999999999999999999985 14789999999999999999999999
Q ss_pred hccHHHHhhc-CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCC-chhhh-hhc
Q 002903 477 FSVDWYRNRI-NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGG-PTHLA-ILS 553 (868)
Q Consensus 477 l~~p~yr~~l-~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGG-Pt~~a-I~a 553 (868)
|+ ++ .+.|+||||||||+||+|+++|+|++|+||++|.++|+++||++++||||||++||||| |.+.+ |++
T Consensus 197 l~------~~~~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgspfRGGg~P~n~a~il~ 270 (506)
T TIGR02751 197 AE------AHEPEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSLPFRGHLSPENIERVLD 270 (506)
T ss_pred HH------hcCcCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCCCcCCCCChhhHHHHHh
Confidence 98 44 66799999999999999999999999999999999999999999999999999999999 99999 999
Q ss_pred CCCCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHH---ccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcC
Q 002903 554 QPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLE---HGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKE 630 (868)
Q Consensus 554 qP~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~---~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~ 630 (868)
||| |.+|+|||| +.||++|. |++++|++. +...+++.+.++|+++|+.+++.|+++||++|..-
T Consensus 271 qpp----G~~t~TeQs---afRYd~p~------e~v~~Av~~~~~a~~~~~~~~~~e~~e~m~~ia~~s~~~Yr~~V~~l 337 (506)
T TIGR02751 271 EYP----GVYTFTVQS---AFKYDYPR------EEVVAAIRRINEKLPNAPPILIDEEEEIIVEIIEIYAKRYQKIIEKL 337 (506)
T ss_pred cCC----CceEEeeec---hhhcCCCH------HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 889999999 99999999 999999994 44445556678899999999999999999998655
Q ss_pred CchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCCCcHHHHHHH
Q 002903 631 PRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEM 710 (868)
Q Consensus 631 p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~~L~~m 710 (868)
-+.+......-|=.==-.+-||-===+|. .++++=-|||-++.|| -+=-+-|-..|+| +|.++.++ .++.|.+.
T Consensus 338 a~~in~ia~~iP~rR~RklhiGlfgYsR~-~~~~~lPRAI~Ft~al-YSiG~PPeliG~~-~L~~~~~~---~l~~l~~~ 411 (506)
T TIGR02751 338 APTINRIASYIPKRRDRKLHVGLFGYSRS-VGGVSLPRAIKFTGAL-YSIGLPPELIGIG-SLSELDED---DLEVIKEL 411 (506)
T ss_pred HHHHHHHHHhCCCchhhhhhccCcccccC-CCCCCCCchhhhhhhh-hhcCCChHHhChh-hhhhcchh---HHHHHHHH
Confidence 55554444444433323333321112222 1346778999999999 6777889999999 89987654 47888887
Q ss_pred HhcCchHHHHHHHHHHHHHhccHHHHHHHHh
Q 002903 711 YNNWPFFRVTIDLVEMVFAKGNHKIAALYDQ 741 (868)
Q Consensus 711 y~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~ 741 (868)
|.. .|.|+.-|.+|.+
T Consensus 412 yp~---------------l~~dl~~a~~y~n 427 (506)
T TIGR02751 412 YPN---------------LRSDLSFAARYLN 427 (506)
T ss_pred hhh---------------HHHHHHHHHHhcC
Confidence 766 5666666666654
No 7
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=99.47 E-value=1.3e-12 Score=148.95 Aligned_cols=274 Identities=23% Similarity=0.246 Sum_probs=184.8
Q ss_pred CCCchhHHHhhcCCChhhHHHHHHHHH----------------HcCCC---CCCccccccCChHHHhcHHHHHHHHhccH
Q 002903 420 PADNFGAYIISMATAPSDVLAVELLQR----------------ECHVK---QPLRVVPLFEKLADLEAAPAALARLFSVD 480 (868)
Q Consensus 420 ~~~a~g~yIISmt~s~sDvL~V~~L~k----------------e~Gl~---~~l~VvPLFETi~DL~~a~~il~~Ll~~p 480 (868)
+..+|--.|.-||+|+.+|..|+-..+ |.+.. ..++|+||||+.+.+-|+++|+++++
T Consensus 117 ~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~--- 193 (491)
T PF14010_consen 117 DVQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYL--- 193 (491)
T ss_dssp SS-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHH---
T ss_pred cCcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHH---
Confidence 556777789999999999999965433 23322 48999999999999999999999988
Q ss_pred HHHhhc---CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch--hhhhhcCC
Q 002903 481 WYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPT--HLAILSQP 555 (868)
Q Consensus 481 ~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGPt--~~aI~aqP 555 (868)
++. -..|.|+||-|||.--.|.++|..+.=-|-.+|.++.++.||++--.=|-|.++-|||=.- -..++.+=
T Consensus 194 ---~~~g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~GS~PFRG~l~p~~~~~~~~EY 270 (491)
T PF14010_consen 194 ---KDKGRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVGSPPFRGGLSPPNVERVLEEY 270 (491)
T ss_dssp ---HHTT---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTGHHHHHHHT
T ss_pred ---HHhcCCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccCCCCcCCCCChHhHHHHHHhc
Confidence 333 3679999999999999999999999999999999999999999999999999999999321 11122221
Q ss_pred CCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 002903 556 PDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVE 635 (868)
Q Consensus 556 ~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~ 635 (868)
.|--.+|.|-- .||..|.--..+.=.. +.......+.....+..+.+-.+.+.+.+.|++.|..--+.
T Consensus 271 ----~gv~T~TIQSA---frYD~p~~~v~~ai~~---l~~~~~~~p~~~~~ee~~~~~~ii~~~s~~Y~~~i~~la~~-- 338 (491)
T PF14010_consen 271 ----PGVYTFTIQSA---FRYDYPYEEVIKAIEK---LNEAPRKKPRIIDEEEEEILLEIIEKYSAEYRSQIEKLAPT-- 338 (491)
T ss_dssp ----TT-SEEEE-HH---HHHTTHHHHHHHHHHH---HHHGGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ----CCeeEEEeeeh---hhcCCCHHHHHHHHHH---HHhcccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 26678999985 8999987654443221 11211122333456667889999999999999987443333
Q ss_pred HHHhhCchhHhhhCCCCCCCCccCCC------------CCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCCCc
Q 002903 636 YFRLATPELEYGRMNIGSRPSKRKPS------------GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRN 703 (868)
Q Consensus 636 yF~~aTPi~ei~~lnIGSRPakR~~~------------~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~ 703 (868)
|++++.+= |.+|.-. +++.=-|||.++.|| -+=-+-|...|+|+.++...+ .
T Consensus 339 -------In~va~~v----P~rR~RklhiGlfgYsR~~~~~~LPRAI~Ftaal-YSiGlPPEllg~~~ll~l~~~----~ 402 (491)
T PF14010_consen 339 -------INRVARYV----PKRRDRKLHIGLFGYSRSVGGVNLPRAITFTAAL-YSIGLPPELLGLGRLLELSKE----E 402 (491)
T ss_dssp -------HHHHHTTS-------S-B----------EEE--HE---HHHHHHHH-HHTT--GGGTTHHHHHHHHHH----H
T ss_pred -------HHHHHHhC----CchhhHHhhhcccccccccCCccCcchhhhhhhH-HhcCCCHHHhchHHHHHHhHH----H
Confidence 33444332 4444321 234567999999999 677788999999999976542 5
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHhccHHHHHHHHhc
Q 002903 704 LHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQL 742 (868)
Q Consensus 704 ~~~L~~my~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~l 742 (868)
++.|.+.|.. -|.|+.-|..|.+.
T Consensus 403 l~~l~~~yp~---------------l~~Dl~~a~~y~n~ 426 (491)
T PF14010_consen 403 LDVLLEYYPN---------------LKEDLEFAARYFNP 426 (491)
T ss_dssp HHHHHHHSTT---------------HHHHHHHHHTT--S
T ss_pred HHHHHHHHHh---------------HHHHHHHHHHhcCh
Confidence 8888888887 78899999988874
No 8
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.89 E-value=6.4e-08 Score=108.31 Aligned_cols=298 Identities=22% Similarity=0.238 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHHhC---------CCCchhHHHhhcCCChhhHHHHHHHHH---------HcCCC---------C-CC
Q 002903 403 TEEIADVLETFHVIAEL---------PADNFGAYIISMATAPSDVLAVELLQR---------ECHVK---------Q-PL 454 (868)
Q Consensus 403 s~~~~e~l~~f~~i~~~---------~~~a~g~yIISmt~s~sDvL~V~~L~k---------e~Gl~---------~-~l 454 (868)
.-+.+-.+.++.+|... ....|--.|.-||+|+..|+.|+-..+ +.|.. + -+
T Consensus 95 ~~erkll~e~l~~i~~s~d~a~~f~~d~~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~I 174 (488)
T COG1892 95 NAERKLLLETLESIARSYDYARVFYGDVAPIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLI 174 (488)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHhhccccccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHH
Confidence 34455556677776632 134666779999999999999975433 33331 2 58
Q ss_pred ccccccCChHHHhcHHHHHHHHhccHHHHhhc-CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002903 455 RVVPLFEKLADLEAAPAALARLFSVDWYRNRI-NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMF 533 (868)
Q Consensus 455 ~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l-~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~F 533 (868)
.|+||||+++.|.+|..|..+. +.-- -..|.|-||-||+.-.-|.++|....=+|-.+|.++.++-||++--.
T Consensus 175 eviPl~e~~~~ll~a~~i~~~y------~~g~~~e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~PI 248 (488)
T COG1892 175 EVIPLFEDRESLLKAALIVGEY------AEGRDPEYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIYPI 248 (488)
T ss_pred hhhHhHhhHHHHHHHHHHHHHH------HhcCCchhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcccce
Confidence 8999999999999999987752 2211 34689999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchhh--hhhcCCCCcccCceEeeccchhhHhhcCChh-HHHHHHHHHHHHHHHccCCCCCCCChhHHH
Q 002903 534 HGRGGTVGRGGGPTHL--AILSQPPDTIHGSLRVTVQGEVIEQSFGEEH-LCFRTLQRFTAATLEHGMRPPISPKPEWRT 610 (868)
Q Consensus 534 HGRGGsvgRGGGPt~~--aI~aqP~gtv~g~irvTeQGEvI~~kYg~~~-~A~r~LE~~~aa~l~~sl~~~~~~~~~~~~ 610 (868)
-|-|..+-|||=--+. ..+.+= .|--..|.|.- .||..+- .+.+-.+.+- .... + ...+...+
T Consensus 249 ~G~Gs~PFRG~l~P~n~e~~~~EY----~gv~T~TvQSa---fkYD~~~~~v~~~i~~i~-----~~~~-~-~~s~~~~e 314 (488)
T COG1892 249 LGVGSLPFRGHLRPENAENVLEEY----AGVYTYTVQSA---FKYDHEYGDVVKAIERIK-----SVKR-E-RLSAYEEE 314 (488)
T ss_pred ecCCCCCcCCCCChhhhHHHHHHc----CCceEEEEeec---ccccCCHHHHHHHHHHHH-----hhcc-c-ccccccHH
Confidence 9999999999754333 234433 35578899986 8998763 4444444422 1111 1 13333445
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHH
Q 002903 611 MMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFG 690 (868)
Q Consensus 611 ~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvG 690 (868)
..-.+...-++.||..|..--+-+.=....-|-.---+|.||++==+|.- +.++=-|||-++.|| -+=-+-|...|+|
T Consensus 315 ~~~~~i~~~~~~Y~~~i~~la~~Inrla~~iP~rR~RklHvGlfGYsR~~-g~~~LPRAI~fTasl-YsiG~PPeLlG~~ 392 (488)
T COG1892 315 ELLAVITIYEEEYRRQIRILAGTINRLADRIPDRRDRKLHVGLFGYSRSI-GELSLPRAIKFTASL-YSIGVPPELLGTG 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhcCcccccccC-CcccCcchheeehhh-hhcCCCHHHhcch
Confidence 55666777788999876333233322333333333334667776666643 357778999999999 5677889999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhcCchHHHHHHHHHHHHHhccHHHHHHHHhc
Q 002903 691 AAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQL 742 (868)
Q Consensus 691 sAL~~~~~~~~~~~~~L~~my~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~l 742 (868)
.... +++ .++.+.+.|.+ ..-|+..|.+|.+.
T Consensus 393 ~ls~---~d~--~~~~v~e~yp~---------------~~~dL~fA~ry~~~ 424 (488)
T COG1892 393 ALSN---DDA--DLDVVSEYYPN---------------LVEDLEFAARYFNP 424 (488)
T ss_pred hccc---ccc--hHHHHHHHhhh---------------HHHHHHHHHHhcCH
Confidence 8875 122 57888888876 56677777777764
No 9
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=96.46 E-value=0.011 Score=62.39 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=105.7
Q ss_pred HHHHHHHHhCCcccccccccccc-hHH-----HHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhc--CCCCCCCCCCCCCH
Q 002903 333 DFLRQVSTFGLSLVRLDIRQESD-RHT-----DVIDAITKHLEIGSYREWSEEKRQEWLLSELS--GKRPLFGPDLPKTE 404 (868)
Q Consensus 333 ~lir~v~~FGfhla~LDIRQ~S~-~H~-----~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~--~~rpl~~~~~~~s~ 404 (868)
.++..+...||...-+|+ +|+. .++ .-+.+++.. +. ..+ ...+++......+.
T Consensus 12 ~~~~~a~~~g~D~vilDl-Ed~~~~~~K~~ar~~~~~~~~~-----------------~~-~~~~~~~~~~VRvn~~~~~ 72 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDL-EDGVPPDEKDEAREDLAEALRS-----------------IR-AARAAGSEIIVRVNSLDSP 72 (221)
T ss_dssp HHHHHHHTTCSSEEEEES-STTSSGGGHHHHHHHHHHHHHH-----------------HH-HHTTSSSEEEEE-SSTTCH
T ss_pred HHHHHHHhcCCCEEEEeC-cccCCcccchhhHHHHHHHHHh-----------------hc-ccccccccceecCCCCCcc
Confidence 466777788999999998 5554 111 111111110 00 011 12233332333344
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCC-----CCCCccccccCChHHHhcHHHHHHHHhcc
Q 002903 405 EIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHV-----KQPLRVVPLFEKLADLEAAPAALARLFSV 479 (868)
Q Consensus 405 ~~~e~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl-----~~~l~VvPLFETi~DL~~a~~il~~Ll~~ 479 (868)
...+-|. +...+.+ ..+|.|++++.|+..+.-+++..-. ...+.|+|+.||.+.++|+++|+. .
T Consensus 73 ~~~~Dl~----~l~~g~~---gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a----~ 141 (221)
T PF03328_consen 73 HIERDLE----ALDAGAD---GIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAA----V 141 (221)
T ss_dssp HHHHHHH----HHHTTSS---EEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHT----S
T ss_pred hhhhhhh----hcccCCC---eeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcc----c
Confidence 4444343 4444544 4589999999999999999886522 246899999999999999999983 2
Q ss_pred HHHHhhcCCeeEEEEeeccCCCchhhhh--HHHHHHHHHHHHHHHHHHhCCe
Q 002903 480 DWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIK 529 (868)
Q Consensus 480 p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~ 529 (868)
.+.--+++|..|=+.|-|.-. ....++.|..+++..|+++|+.
T Consensus 142 -------~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~ 186 (221)
T PF03328_consen 142 -------PGVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKP 186 (221)
T ss_dssp -------TTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEE
T ss_pred -------CCeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 367889999999999988874 5678999999999999999984
No 10
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.92 E-value=0.019 Score=62.26 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=100.5
Q ss_pred HHHHHHhCCcccccccccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHH
Q 002903 335 LRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFH 414 (868)
Q Consensus 335 ir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~ 414 (868)
...+..-||.++-+|. ||+..-.+.+..++..+.. .+.-|+...........+.+|
T Consensus 33 ~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~~-------------------~g~~~lVRvp~~~~~~i~r~L---- 88 (256)
T PRK10558 33 TEVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALKG-------------------SASAPVVRVPTNEPVIIKRLL---- 88 (256)
T ss_pred HHHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHh----
Confidence 3345567999999998 7887777777776654321 111222221111111111111
Q ss_pred HHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHc--CC----------------------CCCCccccccCChHHHhcHH
Q 002903 415 VIAELPADNFGAYIISMATAPSDVLAVELLQREC--HV----------------------KQPLRVVPLFEKLADLEAAP 470 (868)
Q Consensus 415 ~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~--Gl----------------------~~~l~VvPLFETi~DL~~a~ 470 (868)
+.|..++ |+.|.+++.|+-++.-.+|.. |. ...+.|+|+.||.+.++|++
T Consensus 89 ---D~Ga~gi---ivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~ 162 (256)
T PRK10558 89 ---DIGFYNF---LIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVD 162 (256)
T ss_pred ---CCCCCee---eecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHH
Confidence 2233332 666666666666655555442 10 13677999999999999999
Q ss_pred HHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhhh--HHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002903 471 AALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIKLTMF 533 (868)
Q Consensus 471 ~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~l~~F 533 (868)
+|+.. .+.--||+|..|=+.+-|... ..=++..+..++...|+++|+.+-+|
T Consensus 163 eI~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~ 216 (256)
T PRK10558 163 AIAAT-----------EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL 216 (256)
T ss_pred HHhCC-----------CCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc
Confidence 99852 367789999999888887643 22368889999999999999987544
No 11
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=95.44 E-value=0.031 Score=60.44 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=99.1
Q ss_pred HHHHHhCCcccccccccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHH
Q 002903 336 RQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHV 415 (868)
Q Consensus 336 r~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~ 415 (868)
..+...||.++-+|. ||+..-.+.+..++..+.. .+.-|+...........+.+|
T Consensus 27 e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~~~-------------------~g~~~~VRvp~~~~~~i~r~L----- 81 (249)
T TIGR03239 27 EVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMALKG-------------------SASAPVVRPPWNEPVIIKRLL----- 81 (249)
T ss_pred HHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHHhh-------------------cCCCcEEECCCCCHHHHHHHh-----
Confidence 334566899998988 7887777777777654321 112223221111111112221
Q ss_pred HHhCCCCchhHHHhhcCCChhhHHHHHHHHHHc--C----------------------CCCCCccccccCChHHHhcHHH
Q 002903 416 IAELPADNFGAYIISMATAPSDVLAVELLQREC--H----------------------VKQPLRVVPLFEKLADLEAAPA 471 (868)
Q Consensus 416 i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~--G----------------------l~~~l~VvPLFETi~DL~~a~~ 471 (868)
+.|..+| |+.|++++.|+-++.-.+|.. | ....+.|+|+.||.+.++|+++
T Consensus 82 --D~Ga~gI---ivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~e 156 (249)
T TIGR03239 82 --DIGFYNF---LIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDE 156 (249)
T ss_pred --cCCCCEE---EecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHH
Confidence 2233332 566666666666555444432 1 0135679999999999999999
Q ss_pred HHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhhh--HHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002903 472 ALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIKLTMF 533 (868)
Q Consensus 472 il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~l~~F 533 (868)
|+.. .+.--||+|-.|=+.+-|... ..=++..|..++...|+++|+.+-+|
T Consensus 157 I~av-----------~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~ 209 (249)
T TIGR03239 157 IAAV-----------DGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL 209 (249)
T ss_pred HhCC-----------CCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 9852 456789999999888777643 22368889999999999999988654
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=94.29 E-value=0.13 Score=60.60 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=87.5
Q ss_pred HHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEE
Q 002903 413 FHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEV 492 (868)
Q Consensus 413 f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeV 492 (868)
++.+...+. ....+|.++++.||-.+--+..++|. ..+.|+|+.||.+.++|+.+|+.. . --|
T Consensus 177 l~~~~~~~~---d~I~lskV~sa~dv~~l~~~l~~~~~-~~~~Iia~IEt~~av~nl~eI~~~-~------------dgi 239 (473)
T TIGR01064 177 LKFGVEQGV---DMVAASFVRTAEDVLEVREVLGEKGA-KDVKIIAKIENQEGVDNIDEIAEA-S------------DGI 239 (473)
T ss_pred HHHHHHCCC---CEEEECCCCCHHHHHHHHHHHHhcCC-CCceEEEEECCHHHHHhHHHHHhh-C------------CcE
Confidence 344444443 44789999999999999777766663 257899999999999999999976 1 179
Q ss_pred EEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecC-------CCCCCCCCCC
Q 002903 493 MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHG-------RGGTVGRGGG 545 (868)
Q Consensus 493 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHG-------RGGsvgRGGG 545 (868)
|+|-.|=+.+-|. =.+..+|.+++..|+++|+.+.. ++ .-..+-|.-.
T Consensus 240 ~iG~gDL~~~lg~----~~l~~~~~~ii~aaraag~pvi~-atqmLeSM~~~p~PTRAe~ 294 (473)
T TIGR01064 240 MVARGDLGVEIPA----EEVPIAQKKMIRKCNRAGKPVIT-ATQMLDSMIKNPRPTRAEV 294 (473)
T ss_pred EEchHHHHhhcCc----HHHHHHHHHHHHHHHHcCCCEEE-EChhhhhhhcCCCCCcccH
Confidence 9999999999993 36788999999999999998665 44 4456666654
No 13
>PRK09206 pyruvate kinase; Provisional
Probab=91.52 E-value=0.64 Score=54.80 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=81.7
Q ss_pred HHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEE
Q 002903 413 FHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEV 492 (868)
Q Consensus 413 f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeV 492 (868)
++...+.+-+. +-.|+.++++||.++--+..+.|. ..+.|++-.||.+.++|.++|++. .=-|
T Consensus 178 i~f~~~~~vD~---ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~iiaKIEt~eav~nldeIl~~-------------~DgI 240 (470)
T PRK09206 178 LIFGCEQGVDF---VAASFIRKRSDVLEIREHLKAHGG-ENIQIISKIENQEGLNNFDEILEA-------------SDGI 240 (470)
T ss_pred HHHHHHcCCCE---EEEcCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHhHHHHHHh-------------CCEE
Confidence 44444454443 346999999999999877777763 357799999999999999999997 2369
Q ss_pred EEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 493 MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 493 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
|+|-.|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 241 mVaRGDLgvelg----~e~vp~~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 241 MVARGDLGVEIP----VEEVIFAQKMMIEKCNRARKVVIT 276 (470)
T ss_pred EECcchhhhhcC----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999988 788889999999999999998775
No 14
>PRK08187 pyruvate kinase; Validated
Probab=91.44 E-value=0.5 Score=55.97 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=83.2
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHHcCC--CCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCC
Q 002903 424 FGAYIISMATAPSDVLAVELLQRECHV--KQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGK 501 (868)
Q Consensus 424 ~g~yIISmt~s~sDvL~V~~L~ke~Gl--~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~K 501 (868)
+....+|+++++.||..+.-+..+.|. ...+.|+|..||...++|.++|+..--. ...--||+|--|=+-
T Consensus 325 vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~--------~~v~GImiARGDLgv 396 (493)
T PRK08187 325 ADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAG--------RQPFGVMIARGDLAV 396 (493)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCc--------CCCcEEEEEchHhhh
Confidence 334789999999999999877777652 2478899999999999999999964211 123479999999988
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002903 502 DAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPT 547 (868)
Q Consensus 502 DgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGPt 547 (868)
+-|+-. +-..|++++..|+.+|+.+..===-=.|+-..+=||
T Consensus 397 Eig~e~----~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PT 438 (493)
T PRK08187 397 EIGFER----LAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPS 438 (493)
T ss_pred hcCccc----ChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCc
Confidence 888633 444599999999999999875322223444444465
No 15
>PLN02623 pyruvate kinase
Probab=91.15 E-value=0.62 Score=55.96 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=77.0
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhh
Q 002903 427 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 506 (868)
Q Consensus 427 yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 506 (868)
+-+|+.++++||.++--+.+.+|- .+.|++-.||.+.++|.++|++. .=-||||-.|=+-.-|.
T Consensus 295 ialSFVr~a~DV~~~r~~l~~~~~--~~~iiakIEt~eaVeNldeIl~g-------------~DgImIgrgDLgvelg~- 358 (581)
T PLN02623 295 YAVSFVKDAQVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIITA-------------SDGAMVARGDLGAELPI- 358 (581)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC--cceEEEEECCHHHHHhHHHHHHh-------------CCEEEECcchhhhhcCc-
Confidence 567999999999999888887764 57799999999999999999983 34699999999999997
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 507 SAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 507 aa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
..+-.+|+++.+.|+++|+.+..
T Consensus 359 ---~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 359 ---EEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCEEE
Confidence 78889999999999999998863
No 16
>PRK05826 pyruvate kinase; Provisional
Probab=90.66 E-value=0.69 Score=54.51 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=79.7
Q ss_pred HHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEe
Q 002903 416 IAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIG 495 (868)
Q Consensus 416 i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlG 495 (868)
+-+.+.+ -.++||.+++.|+-++--+..++|- ..+.|++-.||.+.++|.++|+.. .=-||+|
T Consensus 182 ald~g~d---~I~~sfV~saedv~~l~~~l~~~~~-~~~~iiakIEt~eav~nldeI~~~-------------~DgImIg 244 (465)
T PRK05826 182 AAEQGVD---YIAVSFVRSAEDVEEARRLLREAGC-PHAKIIAKIERAEAVDNIDEIIEA-------------SDGIMVA 244 (465)
T ss_pred HHHCCCC---EEEECCCCCHHHHHHHHHHHHHcCC-cCceEEEEEcCHHHHHhHHHHHHH-------------cCEEEEC
Confidence 4445443 4578999999999999877777663 267899999999999999999997 2359999
Q ss_pred eccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 496 YSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 496 YSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
-.|=+-+-| .-.+..+|+++.+.|+++|..+..
T Consensus 245 rgDLg~elg----~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 245 RGDLGVEIP----DEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred cchhhhhcC----cHhHHHHHHHHHHHHHHcCCCEEE
Confidence 999999988 457899999999999999987654
No 17
>PTZ00300 pyruvate kinase; Provisional
Probab=89.79 E-value=1.1 Score=52.73 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=81.1
Q ss_pred HHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEE
Q 002903 414 HVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVM 493 (868)
Q Consensus 414 ~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVM 493 (868)
+..-+.+-+. ..+||.+++.|+-++--++...|- .+.|+.-.||.+.++|.++|++. .=-||
T Consensus 154 ~~ald~gvd~---I~~SfVrsaeDv~~vr~~l~~~~~--~~~IiaKIEt~eav~nldeI~~~-------------~DgIm 215 (454)
T PTZ00300 154 QFGVEQGVDM---IFASFIRSAEQVGEVRKALGAKGG--DIMIICKIENHQGVQNIDSIIEE-------------SDGIM 215 (454)
T ss_pred HHHHHCCCCE---EEECCCCCHHHHHHHHHHHHhcCC--CceEEEEECCHHHHHhHHHHHHh-------------CCEEE
Confidence 3344555554 458999999999999888876663 67899999999999999999964 34699
Q ss_pred EeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 494 IGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 494 lGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
+|--|=+-.-| ...+-.+|+++.+.|+++|+.+..
T Consensus 216 VaRGDLgvei~----~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 216 VARGDLGVEIP----AEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred EecchhhhhcC----hHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999988888 788889999999999999988765
No 18
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=88.86 E-value=1.4 Score=52.30 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=75.4
Q ss_pred HHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhh
Q 002903 426 AYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGR 505 (868)
Q Consensus 426 ~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 505 (868)
-+-+|+.++++||-++--+.+..| ..+.|++-.||.+.++|.++|++. .=-||+|-.|=+-.-|.
T Consensus 190 ~ia~SFV~~~~di~~~r~~l~~~~--~~~~iiakIEt~~av~nldeI~~~-------------~DgImIargDLg~e~g~ 254 (480)
T cd00288 190 MIFASFVRKASDVLEIREVLGEKG--KDIKIIAKIENQEGVNNFDEILEA-------------SDGIMVARGDLGVEIPA 254 (480)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEEEECcchhhhhcCh
Confidence 345799999999999987777765 367799999999999999999997 24699999999888883
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 506 FSAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 506 laa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
=.+-.+|+++.+.|+++|+.+..
T Consensus 255 ----~~v~~~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 255 ----EEVFLAQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCEEE
Confidence 67788999999999999987654
No 19
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=88.54 E-value=0.79 Score=50.66 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=75.5
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHH----cCCC-CCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeecc
Q 002903 424 FGAYIISMATAPSDVLAVELLQRE----CHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSD 498 (868)
Q Consensus 424 ~g~yIISmt~s~sDvL~V~~L~ke----~Gl~-~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSD 498 (868)
+..+++.|++++.|+-.+.-+++. .|.. ..+.|+|+.||...+.|+.+|+.. ..+.--+++|-.|
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a----------~~rv~~l~~G~~D 155 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARA----------SKRLMGIALGAED 155 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhc----------CCcceEEEeCHHH
Confidence 344999999999999999756554 2332 367899999999999999999841 1345679999988
Q ss_pred CCCchhhhh-HH-HHHHHHHHHHHHHHHHhCCeE
Q 002903 499 SGKDAGRFS-AA-WQLYKAQEELIKVAKQYGIKL 530 (868)
Q Consensus 499 S~KDgG~la-a~-W~Ly~Aq~~L~~v~~~~gV~l 530 (868)
=+-|-|.-. .. -+++.+..+++..|+.+|+..
T Consensus 156 ls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~ 189 (288)
T TIGR01588 156 YVTDMKTSRSPDGTELFYARCAILHAARAAGIAA 189 (288)
T ss_pred HHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCc
Confidence 777777543 22 369999999999999999875
No 20
>PRK06354 pyruvate kinase; Provisional
Probab=88.31 E-value=1.5 Score=53.28 Aligned_cols=97 Identities=25% Similarity=0.260 Sum_probs=78.6
Q ss_pred HHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHH-cCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEE
Q 002903 414 HVIAELPADNFGAYIISMATAPSDVLAVELLQRE-CHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEV 492 (868)
Q Consensus 414 ~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke-~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeV 492 (868)
+...+.+-+. +-+|+.++++||.++--+..+ .| ..+.|+.-.||.+.|+|.++|++. .=-|
T Consensus 185 ~f~~~~~vD~---ia~SFVr~~~dv~~~r~~l~~~~~--~~~~iiaKIEt~eav~nldeI~~~-------------~DgI 246 (590)
T PRK06354 185 IFGLEQGVDW---IALSFVRNPSDVLEIRELIEEHNG--KHIPIIAKIEKQEAIDNIDAILEL-------------CDGL 246 (590)
T ss_pred HHHHHcCCCE---EEEcCCCCHHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHh-------------cCEE
Confidence 3334444443 447999999999999776644 34 367899999999999999999987 2359
Q ss_pred EEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 493 MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 493 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
|+|-.|=+-.-| ...+..+|+++.+.|+++|..+..
T Consensus 247 mVaRGDLgve~g----~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 247 MVARGDLGVEIP----AEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred EEccchhhcccC----cHHHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999988 778888999999999999998764
No 21
>PRK06247 pyruvate kinase; Provisional
Probab=88.18 E-value=1.5 Score=51.70 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=77.6
Q ss_pred HHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEE
Q 002903 414 HVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVM 493 (868)
Q Consensus 414 ~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVM 493 (868)
+...+.+-+. +-+|+.++++||.++--+.. ..+.|++-.||.+.++|.++|++. .=.||
T Consensus 180 ~f~~~~~vD~---ia~SFVr~a~Di~~~r~~l~-----~~~~iiaKIEt~eav~nldeI~~~-------------~DgIm 238 (476)
T PRK06247 180 EFALELGVDW---VALSFVQRPEDVEEVRKIIG-----GRVPVMAKIEKPQAIDRLEAIVEA-------------SDAIM 238 (476)
T ss_pred HHHHHcCCCE---EEECCCCCHHHHHHHHHHhh-----hcCeEEEEECCHHHHHhHHHHHHH-------------cCEEE
Confidence 3344444443 45799999999999866652 257799999999999999999997 24699
Q ss_pred EeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 494 IGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 494 lGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
+|-.|=+-.-|+ ..+-.+|+++.+.|+++|..+..
T Consensus 239 VaRGDLgve~g~----~~v~~~qk~ii~~~~~~gkpvI~ 273 (476)
T PRK06247 239 VARGDLGVEVPL----EQVPLIQKRIIRAARRAGKPVVV 273 (476)
T ss_pred EccchhccccCH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999997 89999999999999999998765
No 22
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.12 E-value=0.96 Score=48.99 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=70.5
Q ss_pred hHHHhhcCCChhhHHHHHHHHHHc--CCC-----------------------CCCccccccCChHHHhcHHHHHHHHhcc
Q 002903 425 GAYIISMATAPSDVLAVELLQREC--HVK-----------------------QPLRVVPLFEKLADLEAAPAALARLFSV 479 (868)
Q Consensus 425 g~yIISmt~s~sDvL~V~~L~ke~--Gl~-----------------------~~l~VvPLFETi~DL~~a~~il~~Ll~~ 479 (868)
...||.|.+|+.|+-++.-.+|.. |.. ..+-|+|+.||.+.++|+++|+..
T Consensus 86 ~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~---- 161 (249)
T TIGR02311 86 QTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAV---- 161 (249)
T ss_pred CEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCC----
Confidence 344666677777766666666642 211 145699999999999999999852
Q ss_pred HHHHhhcCCeeEEEEeeccCCCchhhhh-HH-HHHHHHHHHHHHHHHHhCCeEEE
Q 002903 480 DWYRNRINGKQEVMIGYSDSGKDAGRFS-AA-WQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 480 p~yr~~l~~~QeVMlGYSDS~KDgG~la-a~-W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
.+.=-||+|-+|=+.+-|... .. -.+..|-.++.+.|+++|+..-+
T Consensus 162 -------~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi 209 (249)
T TIGR02311 162 -------EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI 209 (249)
T ss_pred -------CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee
Confidence 345679999999888888633 23 36777888899999999987743
No 23
>PRK06739 pyruvate kinase; Validated
Probab=78.91 E-value=9.6 Score=43.55 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=79.4
Q ss_pred HHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEE
Q 002903 413 FHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEV 492 (868)
Q Consensus 413 f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeV 492 (868)
++.....+-+.+. +|+.++++||.++--+.++.|. ..+.|+.=.||.+.++|-++|++. ---|
T Consensus 171 i~f~~~~~vD~ia---~SFVr~~~Dv~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eI~~~-------------sDgi 233 (352)
T PRK06739 171 IQFLLEEDVDFIA---CSFVRKPSHIKEIRDFIQQYKE-TSPNLIAKIETMEAIENFQDICKE-------------ADGI 233 (352)
T ss_pred HHHHHHcCCCEEE---ECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHh-------------cCEE
Confidence 4444455545443 5999999999999888888775 467899999999999999999997 3468
Q ss_pred EEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 493 MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 493 MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
|+.--|=+ .=..-+.+...|+++...|+++|..+..
T Consensus 234 mVARGDLg----ve~~~e~vp~~Qk~Ii~~c~~~gkPvIv 269 (352)
T PRK06739 234 MIARGDLG----VELPYQFIPLLQKMMIQECNRTNTYVIT 269 (352)
T ss_pred EEECcccc----cccCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 88877654 4455689999999999999999988774
No 24
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=76.44 E-value=4.4 Score=46.07 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=72.4
Q ss_pred HHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhh
Q 002903 426 AYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGR 505 (868)
Q Consensus 426 ~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~ 505 (868)
-+.+|+.++++||.++--+.++.| ..+.|+.=.||.+.++|-++|++. -=-||+.--| =|.
T Consensus 192 ~IalSFVrsa~dV~~lr~~l~~~~--~~~~iiaKIE~~~~v~nl~eI~~~-------------sDgimiaRGD----Lg~ 252 (348)
T PF00224_consen 192 FIALSFVRSAEDVKELRKILGEKG--KDIKIIAKIETKEAVENLDEILEA-------------SDGIMIARGD----LGV 252 (348)
T ss_dssp EEEETTE-SHHHHHHHHHHHTCTT--TTSEEEEEE-SHHHHHTHHHHHHH-------------SSEEEEEHHH----HHH
T ss_pred EEEecCCCchHHHHHHHHHhhhcC--cccceeeccccHHHHhhHHHHhhh-------------cCeEEEecCC----cce
Confidence 345799999999999988888877 578899999999999999999986 2368887665 455
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002903 506 FSAAWQLYKAQEELIKVAKQYGIKLTMF 533 (868)
Q Consensus 506 laa~W~Ly~Aq~~L~~v~~~~gV~l~~F 533 (868)
=..-..+..+|+.+...|+++|..+.+=
T Consensus 253 e~~~e~v~~~Qk~ii~~~~~~~kpvi~A 280 (348)
T PF00224_consen 253 EIPFEKVPIIQKRIIKKCNAAGKPVIVA 280 (348)
T ss_dssp HSTGGGHHHHHHHHHHHHHHHT-EEEEE
T ss_pred eeeHHHHHHHHHHHHHHHHHhCCCeeeh
Confidence 5566789999999999999999988763
No 25
>PRK14725 pyruvate kinase; Provisional
Probab=74.27 E-value=9.8 Score=46.23 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=82.0
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhh
Q 002903 427 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 506 (868)
Q Consensus 427 yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 506 (868)
+-+|+.++++||.++.-+.++.|. ..+.|+.=.||.+.++|-++|+..-..++ .--|||.-=|=+-.-|
T Consensus 448 ValSFVrs~~DV~~lr~~L~~~g~-~~~~IiaKIEt~~av~nL~eIl~~am~~~--------~DGIMIARGDLgvEi~-- 516 (608)
T PRK14725 448 VALSFVRSPEDVRLLLDALEKLGA-DDLGVVLKIETRRAFENLPRILLEAMRHP--------RFGVMIARGDLAVEVG-- 516 (608)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhhccCC--------CcEEEEECCccccccC--
Confidence 346999999999999888887775 45789999999999999999998643322 2458888766555544
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCch
Q 002903 507 SAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPT 547 (868)
Q Consensus 507 aa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGPt 547 (868)
-..+...|+++...|+++|+.++.===-=.|+-..+=||
T Consensus 517 --~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PT 555 (608)
T PRK14725 517 --FERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPS 555 (608)
T ss_pred --HHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCC
Confidence 478999999999999999998886333233444444455
No 26
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=71.50 E-value=14 Score=40.76 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=56.5
Q ss_pred CCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhhh--HHHHHHHHHHHHHHHHHHhCCe
Q 002903 452 QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFS--AAWQLYKAQEELIKVAKQYGIK 529 (868)
Q Consensus 452 ~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~ 529 (868)
..+-|++..||.+.++|+.+|+.. .+.--|++|=.|=+.+-|+.. -.=.+..|-+++.+.|+++|+.
T Consensus 144 ~~~~vi~qiEt~~a~~n~~~I~~~-----------~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~ 212 (267)
T PRK10128 144 DSLCLLVQVESKTALDNLDEILDV-----------EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKA 212 (267)
T ss_pred cccEEEEEECCHHHHHhHHHHhCC-----------CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCe
Confidence 357789999999999999999853 567789999998877777532 1235667999999999999998
Q ss_pred EEEe
Q 002903 530 LTMF 533 (868)
Q Consensus 530 l~~F 533 (868)
+-+|
T Consensus 213 ~G~~ 216 (267)
T PRK10128 213 AGFL 216 (267)
T ss_pred EEEc
Confidence 7543
No 27
>PLN02765 pyruvate kinase
Probab=68.08 E-value=21 Score=42.92 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=72.2
Q ss_pred HhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhhh
Q 002903 428 IISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFS 507 (868)
Q Consensus 428 IISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~la 507 (868)
-+|+.++++||.++--+.++.|. ..+.|+.=.||.+.++|-++|++. ---||+.--|=+ .=.
T Consensus 225 a~SFVr~a~DI~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eIi~~-------------sDgIMVARGDLG----vEi 286 (526)
T PLN02765 225 SLSYTRHAEDVREAREFLSSLGL-SQTQIFAKIENVEGLTHFDEILQE-------------ADGIILSRGNLG----IDL 286 (526)
T ss_pred EECCCCCHHHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHHHHHh-------------cCEEEEecCccc----ccc
Confidence 46999999999999888888775 467899999999999999999986 246888877654 445
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEE
Q 002903 508 AAWQLYKAQEELIKVAKQYGIKLT 531 (868)
Q Consensus 508 a~W~Ly~Aq~~L~~v~~~~gV~l~ 531 (868)
.-..+..+|+++...|+++|..+.
T Consensus 287 p~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 287 PPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred CHHHhHHHHHHHHHHHHHhCCCeE
Confidence 668899999999999999987654
No 28
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=65.91 E-value=2.9 Score=45.97 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.4
Q ss_pred HhhhCCCCCCCCc
Q 002903 645 EYGRMNIGSRPSK 657 (868)
Q Consensus 645 ei~~lnIGSRPak 657 (868)
.+-.|.||.||-=
T Consensus 114 ~VVGLsIgTRPDC 126 (312)
T COG1242 114 GVVGLSIGTRPDC 126 (312)
T ss_pred CeeEEeecCCCCC
Confidence 3445999999953
No 29
>PLN02461 Probable pyruvate kinase
Probab=65.57 E-value=25 Score=42.18 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=73.2
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhh
Q 002903 427 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 506 (868)
Q Consensus 427 yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 506 (868)
+-+|+.++++||.++--+....|. .+.|+.=.||.+.++|-++|++. ---||+..-|=+-.-|
T Consensus 211 ia~SFVr~a~DV~~~r~~l~~~~~--~~~IiAKIE~~~av~nl~eIi~~-------------sDgIMVARGDLGvEip-- 273 (511)
T PLN02461 211 IALSFVRKGSDLVEVRKVLGEHAK--SILLISKVENQEGLDNFDDILAE-------------SDAFMVARGDLGMEIP-- 273 (511)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCC--CCCEEEEECCHHHHHHHHHHHHh-------------cCEEEEeccccccccC--
Confidence 457999999999999888876663 67899999999999999999997 3469998887655544
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 507 SAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 507 aa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
-..+..+|+++.+.|+++|..+..
T Consensus 274 --~e~vp~~Qk~II~~c~~~gkPVIv 297 (511)
T PLN02461 274 --IEKIFLAQKMMIYKCNLAGKPVVT 297 (511)
T ss_pred --HHHhHHHHHHHHHHHHHcCCCeEE
Confidence 578899999999999999987764
No 30
>PTZ00066 pyruvate kinase; Provisional
Probab=62.48 E-value=27 Score=41.96 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=73.5
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhh
Q 002903 427 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 506 (868)
Q Consensus 427 yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 506 (868)
+-+|+.++++||.++--+.++.|- .+.|+.=.||.+.++|-++|++. -=-||+..-|=+ .=
T Consensus 227 IalSFVr~a~DI~~~r~~l~~~g~--~~~IiAKIE~~~av~NldeIl~~-------------sDGIMVARGDLG----vE 287 (513)
T PTZ00066 227 IALSFVQSADDVRLCRQLLGERGR--HIKIIPKIENIEGLINFDEILAE-------------SDGIMVARGDLG----ME 287 (513)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCC--CceEEEEECCHHHHHHHHHHHHh-------------cCEEEEEccccc----cc
Confidence 457999999999999888888774 67889999999999999999996 356899887654 44
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 507 SAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 507 aa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
..-..+..+|+++.+.|+++|..+..
T Consensus 288 ip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 288 IPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred cChHHcchHHHHHHHHHHHhCCCEEE
Confidence 55678999999999999999987764
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=59.72 E-value=7.1 Score=43.27 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=75.0
Q ss_pred chhHHHhhcCCChhhHHHHHHHHHHcCCCCCCc-cccccCChHHHhcHHHHHHHHhccHHHHhhcCCe-eEEEEeeccCC
Q 002903 423 NFGAYIISMATAPSDVLAVELLQRECHVKQPLR-VVPLFEKLADLEAAPAALARLFSVDWYRNRINGK-QEVMIGYSDSG 500 (868)
Q Consensus 423 a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~-VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~-QeVMlGYSDS~ 500 (868)
++...++..+++++|+..+-.+.....-.+++. +..++||..-+.|+.+|... .++ .-+++|=.|=.
T Consensus 80 ~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a-----------~~~l~~l~~Ga~Dl~ 148 (283)
T COG2301 80 AVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAA-----------SGRLVGLAFGANDLA 148 (283)
T ss_pred CCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcC-----------ccceeeeEecHHHHH
Confidence 366778999999999999877766544333444 89999999999999999875 334 66777777755
Q ss_pred CchhhhhHH---HHHHHHHHHHHHHHHHhCCeEEEecC
Q 002903 501 KDAGRFSAA---WQLYKAQEELIKVAKQYGIKLTMFHG 535 (868)
Q Consensus 501 KDgG~laa~---W~Ly~Aq~~L~~v~~~~gV~l~~FHG 535 (868)
+|-|--.+. =.|+-+...++..|+.+|+.. |+|
T Consensus 149 ~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a--~D~ 184 (283)
T COG2301 149 ADLGARRSPDGTDPLRYARAMIVLAARAAGLAA--IDG 184 (283)
T ss_pred HHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCc--ccc
Confidence 555543332 267888889999999999887 565
No 32
>PLN02762 pyruvate kinase complex alpha subunit
Probab=56.12 E-value=53 Score=39.52 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=73.8
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhh
Q 002903 427 YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRF 506 (868)
Q Consensus 427 yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~l 506 (868)
.-+|+.++++||.++--+.++.|....+.|+.=.||.+.++|-++|++. -=-||+.--|=+-+
T Consensus 220 ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~-------------sDgiMVARGDLGvE---- 282 (509)
T PLN02762 220 IAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRA-------------SDGAMVARGDLGAQ---- 282 (509)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHh-------------cCEEEEecCccccc----
Confidence 4579999999999998888887753467899999999999999999986 23689887765544
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 507 SAAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 507 aa~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
..-..+..+|+++...|+++|..+..
T Consensus 283 ip~e~vp~~QK~II~~c~~~gKPVIv 308 (509)
T PLN02762 283 IPLEQVPSVQEKIVRLCRQLNKPVIV 308 (509)
T ss_pred cCHHHhHHHHHHHHHHHHHhCCCEEE
Confidence 45578999999999999999987764
No 33
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=55.55 E-value=33 Score=32.59 Aligned_cols=55 Identities=13% Similarity=0.331 Sum_probs=44.5
Q ss_pred CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCchhhhh
Q 002903 487 NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAI 551 (868)
Q Consensus 487 ~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGPt~~aI 551 (868)
|-.+-+.++|.|+.-.. |......+.|.++.+++...++|-|-..|. |.|-|.++
T Consensus 66 Gv~~~~~l~~~D~~~~~------~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~----gH~DH~~~ 120 (128)
T PF02585_consen 66 GVENVIFLDFPDGQLPG------WSWEELVRDLEDLIREFRPDVVFTPDPDDG----GHPDHRAV 120 (128)
T ss_dssp T-EEEEEEEECTTSCTC------HHHHHHHHHHHHHHHHH-ESEEEEE-STTS-----SHHHHHH
T ss_pred CCceEEEeecCCCCccc------ccHHHHHHHHHHHHHHcCCCEEEECCCCCC----CcHHHHHH
Confidence 44588999999999887 999999999999999999888888876666 88988864
No 34
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=53.94 E-value=29 Score=41.71 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=72.8
Q ss_pred HHHHHHhCCCCchhH-HHhhcCCChhhHHHHHHH----HHHcCCC-CCCccccccCChHHHhcHHHHHHHHhccHHHHhh
Q 002903 412 TFHVIAELPADNFGA-YIISMATAPSDVLAVELL----QRECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNR 485 (868)
Q Consensus 412 ~f~~i~~~~~~a~g~-yIISmt~s~sDvL~V~~L----~ke~Gl~-~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~ 485 (868)
.|...+.+....-|- ++|..++++.|+..+--+ .+..|+. .++.++||.||+..+.|..+|+.++= .+
T Consensus 172 ~fhn~~~l~~~g~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr------~r 245 (511)
T cd00480 172 FFHNAHALKARGSGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELR------DH 245 (511)
T ss_pred HHHhHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhcc------Cc
Confidence 444444443333343 478999999999888433 3456775 47999999999999999999997641 12
Q ss_pred cCCeeEEEEeeccCCCchhhh-----------------hHHHHHHHHHHHHHHHHHHhCCeE
Q 002903 486 INGKQEVMIGYSDSGKDAGRF-----------------SAAWQLYKAQEELIKVAKQYGIKL 530 (868)
Q Consensus 486 l~~~QeVMlGYSDS~KDgG~l-----------------aa~W~Ly~Aq~~L~~v~~~~gV~l 530 (868)
+ --+..|.-|=..|-|.- ++-| ++-.+..++..|+++|+..
T Consensus 246 v---~gLn~G~~Dy~~sli~~~~~~~~~~~pd~~~~~m~~~~-l~ay~~~lv~aa~a~G~~A 303 (511)
T cd00480 246 S---AGLNCGRWDYIFSEIKTFRNHPDFVLPDRAKVTMTSPF-MRAYEKLLVKTCHRRGAHA 303 (511)
T ss_pred c---eeeecChHHHHHHhccccccCccccCCcccccccccHH-HHHHHHHHHHHHHHcCCCc
Confidence 2 33566666655544321 2233 5556778999999999875
No 35
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=52.55 E-value=14 Score=42.79 Aligned_cols=73 Identities=33% Similarity=0.516 Sum_probs=42.4
Q ss_pred CCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEee----ccCCCchhhhhHHHHHHHHHHHHHHHHHHhCC
Q 002903 453 PLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGY----SDSGKDAGRFSAAWQLYKAQEELIKVAKQYGI 528 (868)
Q Consensus 453 ~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGY----SDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV 528 (868)
||++|.--.+...|++.=..|.. .+.--||+=- =.+.. .-.=+|+-|+ +|.+++++.|.
T Consensus 5 PLd~v~~~~~~~~~~~~L~~LK~-----------~GV~GVmvdvWWGiVE~~~---p~~ydWs~Y~---~l~~~vr~~GL 67 (402)
T PF01373_consen 5 PLDTVTDDNDWNALEAQLRALKS-----------AGVDGVMVDVWWGIVEGEG---PQQYDWSGYR---ELFEMVRDAGL 67 (402)
T ss_dssp -TTSSCTTSECHHHHHHHHHHHH-----------TTEEEEEEEEEHHHHTGSS---TTB---HHHH---HHHHHHHHTT-
T ss_pred eeeeecCCCcHHHHHHHHHHHHH-----------cCCcEEEEEeEeeeeccCC---CCccCcHHHH---HHHHHHHHcCC
Confidence 67777665555544444333332 4677777732 22221 2234788887 67888999999
Q ss_pred eEEE---ecCCCCCCCC
Q 002903 529 KLTM---FHGRGGTVGR 542 (868)
Q Consensus 529 ~l~~---FHGRGGsvgR 542 (868)
|+.. ||+.||.||-
T Consensus 68 k~~~vmsfH~cGgNvgD 84 (402)
T PF01373_consen 68 KLQVVMSFHQCGGNVGD 84 (402)
T ss_dssp EEEEEEE-S-BSSSTTS
T ss_pred eEEEEEeeecCCCCCCC
Confidence 9877 9999999985
No 36
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=46.43 E-value=31 Score=41.94 Aligned_cols=101 Identities=17% Similarity=0.074 Sum_probs=73.9
Q ss_pred hhHHHhhcCCChhhHHHHHHHHHHcC-------C--CCCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEE
Q 002903 424 FGAYIISMATAPSDVLAVELLQRECH-------V--KQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMI 494 (868)
Q Consensus 424 ~g~yIISmt~s~sDvL~V~~L~ke~G-------l--~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMl 494 (868)
--..++-|.++++++.++.-++++++ . ...+.|.+..||+..+.+++.|+.. .--|+|
T Consensus 384 ~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~-------------vDf~sI 450 (565)
T TIGR01417 384 KLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE-------------VDFFSI 450 (565)
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh-------------CCEEEE
Confidence 34568899999999999988888643 2 1468899999999999999999872 344566
Q ss_pred eeccCCC-----c-----hhh--hhHHHHHHHHHHHHHHHHHHhCCeEEEecCCC
Q 002903 495 GYSDSGK-----D-----AGR--FSAAWQLYKAQEELIKVAKQYGIKLTMFHGRG 537 (868)
Q Consensus 495 GYSDS~K-----D-----gG~--laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRG 537 (868)
|..|=+- | -|+ =.-.=++.++-.++++.|+++|+.+.+.+.-.
T Consensus 451 GtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a 505 (565)
T TIGR01417 451 GTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA 505 (565)
T ss_pred ChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC
Confidence 6555433 2 221 12234788899999999999999887655443
No 37
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=44.91 E-value=44 Score=40.14 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=66.9
Q ss_pred HHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002903 426 AYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG 500 (868)
Q Consensus 426 ~yIISmt~s~sDvL~V~~L~----ke~Gl~-~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~ 500 (868)
-++|..++++.|+-.+--+. +..|+. .++.+.+|.||+..+-|+.+|+.++ |.|+ .-++.|.-|=.
T Consensus 187 yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~Dy~ 257 (511)
T cd00727 187 YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYEL------RDHS---AGLNCGRWDYI 257 (511)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChHHHH
Confidence 67899999999998774333 355775 5799999999999999999999775 2233 34666766655
Q ss_pred Cchhhhh---------------HHHHHHHH-HHHHHHHHHHhCCe
Q 002903 501 KDAGRFS---------------AAWQLYKA-QEELIKVAKQYGIK 529 (868)
Q Consensus 501 KDgG~la---------------a~W~Ly~A-q~~L~~v~~~~gV~ 529 (868)
+|-|.-. -.=.+..| +..++..|+++|+.
T Consensus 258 ~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~ 302 (511)
T cd00727 258 FSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAH 302 (511)
T ss_pred HHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 4442221 11145666 66699999999863
No 38
>PRK09255 malate synthase; Validated
Probab=44.02 E-value=50 Score=39.89 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=66.3
Q ss_pred HHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002903 426 AYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG 500 (868)
Q Consensus 426 ~yIISmt~s~sDvL~V~~L~----ke~Gl~-~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~ 500 (868)
.++|..++++.|+-.+--+. +..|+. .++.+.+|.||+..+-|..+|+.++ |.|+ .-++.|.-|=.
T Consensus 208 ~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~------r~Rl---~gLn~G~~Dy~ 278 (531)
T PRK09255 208 YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---AGLNCGRWDYI 278 (531)
T ss_pred EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhc------cCce---EEEEcChHHhh
Confidence 77899999999998774443 356775 5799999999999999999999765 2333 44667766655
Q ss_pred Cchh--------hh-------hHHHHHHHH-HHHHHHHHHHhCC
Q 002903 501 KDAG--------RF-------SAAWQLYKA-QEELIKVAKQYGI 528 (868)
Q Consensus 501 KDgG--------~l-------aa~W~Ly~A-q~~L~~v~~~~gV 528 (868)
.|-+ +. +-.=.+..| +..++..|+++|+
T Consensus 279 ~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~ 322 (531)
T PRK09255 279 FSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGA 322 (531)
T ss_pred hhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCC
Confidence 3322 11 111145666 6677799999886
No 39
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=41.36 E-value=14 Score=42.64 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=42.8
Q ss_pred chhHHHhhcCCChhhHHHHHHHHHHcCCC----------------CCCccccccCChHHHhcHHHHHHHHhccHHHHhh
Q 002903 423 NFGAYIISMATAPSDVLAVELLQRECHVK----------------QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNR 485 (868)
Q Consensus 423 a~g~yIISmt~s~sDvL~V~~L~ke~Gl~----------------~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~ 485 (868)
--|.|.||...-.-.--.|.-|||++|+. ..|+|.|=|-++++|+.|-+++-.....-...+.
T Consensus 343 P~GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~ekl 421 (425)
T PF12897_consen 343 PKGGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVEKL 421 (425)
T ss_dssp -SBSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888776555556777899999973 3699999999999999999988766554444433
No 40
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=39.45 E-value=53 Score=41.59 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=71.3
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCC--
Q 002903 427 YIISMATAPSDVLAVELLQRECHVK---QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGK-- 501 (868)
Q Consensus 427 yIISmt~s~sDvL~V~~L~ke~Gl~---~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~K-- 501 (868)
.++-|.+++.++.++.-.++..|+. ..+.|....||++.+.++++|+.. ..-|+||-.|=+-
T Consensus 633 Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~-------------vDfisIGtnDLtq~~ 699 (782)
T TIGR01418 633 VMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKE-------------FDGFSIGSNDLTQLT 699 (782)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999998888888874 237899999999999999999986 2345666555332
Q ss_pred --------chhhhh--HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 502 --------DAGRFS--AAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 502 --------DgG~la--a~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
.-|.+- -+=++.++-+++.+.|+++|+.+.+
T Consensus 700 lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgi 740 (782)
T TIGR01418 700 LGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGI 740 (782)
T ss_pred hCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 112111 1246888999999999999999876
No 41
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=39.41 E-value=2e+02 Score=33.96 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=74.9
Q ss_pred HHHHHHhhcCcee--EeeecCC-------CcchhhhHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccc
Q 002903 55 EEIFDALKNQTVD--LVLTAHP-------TQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDE 125 (868)
Q Consensus 55 e~i~~~L~~~~i~--pVlTAHP-------TEa~RrtvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~e 125 (868)
...++.+.+..=. .+| -+| ++..+.=+.+-++++...|++.-...+|.+...+..+.-.+....+.+--+
T Consensus 125 ~k~~e~la~~~~vP~~~i-d~P~~~~~~~~~~~~~Y~~~ql~~l~~~LEe~tG~kit~e~L~eaI~n~nr~~~~~~e~~~ 203 (430)
T TIGR03191 125 AKWYQHVAKEEKIPDFYL-DVGVGAYKDLTDARLDYVANQLHDGIEFVEKASGRKCDDELFIKAIKNEMRSTARWADICA 203 (430)
T ss_pred HHHHHHHHHhcCCCeEEE-ECCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555443322 233 666 456666777778888888888877777877655555433333333336688
Q ss_pred cccCCCChHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhc---CCCCCCCCCCCccccCcCCCCCCCCCCC
Q 002903 126 IRRTQPTPQDEMRAGMSYFHETIWKG---VPKFLRRVDTALKNI---GINERVPYNAPLIQFSSWMGGDRDGNPR 194 (868)
Q Consensus 126 ir~~kPtv~DE~~~~l~y~~~~l~~a---vP~~~~~l~~~l~~~---~~~~~~~~~~~~i~fgSWiGGDRDGNP~ 194 (868)
+|..+|+|.+-..-...|....+... .-.+++.|-+-+++. |. ...|.. .+ |+ |++|-- |-|+
T Consensus 204 l~~~~P~Pisg~dl~~~~~~~~~~~~~~~~~~~~~~L~~el~~r~~~G~-~~~~~e-~~-Ri--l~~g~p-~~~~ 272 (430)
T TIGR03191 204 LNKAKPAPLDEKTMYSLYVLAILHKSSQWCADFMDELYEEVKDRVARGI-AAVPNE-RC-RL--MSDTQP-PWPF 272 (430)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHcCC-CcCCCC-Cc-eE--EEeCCC-CCch
Confidence 99999999985533333333333333 344555555555542 21 122322 22 55 888765 4443
No 42
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=39.39 E-value=64 Score=40.93 Aligned_cols=93 Identities=20% Similarity=0.118 Sum_probs=70.8
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCC---CCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCC---
Q 002903 427 YIISMATAPSDVLAVELLQRECHVK---QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG--- 500 (868)
Q Consensus 427 yIISmt~s~sDvL~V~~L~ke~Gl~---~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~--- 500 (868)
.++-|-++++++.++.-.+|..|+. ..+.|.+..||++.+.++++|+.. ..-|+||-.|=+
T Consensus 640 ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~-------------vDfi~IGtnDLtq~~ 706 (795)
T PRK06464 640 VMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEY-------------FDGFSIGSNDLTQLT 706 (795)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHh-------------CCEEEECchHHHHHH
Confidence 7899999999999999999888874 367899999999999999999986 223444444322
Q ss_pred -------Cchhhhh--HHHHHHHHHHHHHHHHHHhCCeEEE
Q 002903 501 -------KDAGRFS--AAWQLYKAQEELIKVAKQYGIKLTM 532 (868)
Q Consensus 501 -------KDgG~la--a~W~Ly~Aq~~L~~v~~~~gV~l~~ 532 (868)
..-|.+- -+=++.++-+++.+.|+++|+.+-+
T Consensus 707 lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgi 747 (795)
T PRK06464 707 LGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGI 747 (795)
T ss_pred hCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1112211 1237888999999999999998875
No 43
>PLN00197 beta-amylase; Provisional
Probab=39.30 E-value=27 Score=42.02 Aligned_cols=33 Identities=42% Similarity=0.811 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCC
Q 002903 508 AAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRG 543 (868)
Q Consensus 508 a~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGsvgRG 543 (868)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.
T Consensus 161 YdWsgY~---~L~~mvr~~GLKlq~VmSFHqCGGNVGD~ 196 (573)
T PLN00197 161 YNWGGYN---ELLEMAKRHGLKVQAVMSFHQCGGNVGDS 196 (573)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCc
Confidence 3788886 688899999999875 99999998864
No 44
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=39.24 E-value=35 Score=40.90 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=66.6
Q ss_pred HHHhhcCCChhhHHHHHHHH----HHcCCC-CCCccccccCChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCC
Q 002903 426 AYIISMATAPSDVLAVELLQ----RECHVK-QPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSG 500 (868)
Q Consensus 426 ~yIISmt~s~sDvL~V~~L~----ke~Gl~-~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~ 500 (868)
.++|...+++.|+-.+--+. +..|+. .++.+.+|.||+-.+-|.++|+.++ |.|+ .-+.+|.-|=.
T Consensus 188 ~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~al------r~Rl---~gLn~G~~Dy~ 258 (511)
T TIGR01344 188 YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYEL------REHI---SGLNCGRWDYI 258 (511)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhc------cCce---eEEEcChHHhh
Confidence 66889999999998774433 345775 5799999999999999999999775 3333 44677777776
Q ss_pred Cchh--------hhhHH-H------HHHHH-HHHHHHHHHHhCC
Q 002903 501 KDAG--------RFSAA-W------QLYKA-QEELIKVAKQYGI 528 (868)
Q Consensus 501 KDgG--------~laa~-W------~Ly~A-q~~L~~v~~~~gV 528 (868)
++-+ +.... . .+..| +..++..|+++|+
T Consensus 259 ~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~ 302 (511)
T TIGR01344 259 FSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGA 302 (511)
T ss_pred hhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCC
Confidence 3222 12111 1 45666 6677799999986
No 45
>PLN02803 beta-amylase
Probab=38.92 E-value=28 Score=41.74 Aligned_cols=34 Identities=38% Similarity=0.793 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002903 508 AAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRGG 544 (868)
Q Consensus 508 a~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGsvgRGG 544 (868)
=+|+=|+ +|.++++++|.|+.. ||..||.||-.-
T Consensus 141 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 177 (548)
T PLN02803 141 YNWEGYA---ELVQMVQKHGLKLQVVMSFHQCGGNVGDSC 177 (548)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 688899999999875 999999998754
No 46
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=37.80 E-value=25 Score=26.81 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=16.0
Q ss_pred HHHHHHHhccHHHHhhc
Q 002903 470 PAALARLFSVDWYRNRI 486 (868)
Q Consensus 470 ~~il~~Ll~~p~yr~~l 486 (868)
.+||..+-.+|.||+||
T Consensus 7 gqimk~yaadpeyrkh~ 23 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHL 23 (38)
T ss_pred hHHHHHHhcCHHHHHHH
Confidence 58999999999999998
No 47
>PLN02801 beta-amylase
Probab=37.30 E-value=30 Score=41.20 Aligned_cols=34 Identities=32% Similarity=0.791 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEE---EecCCCCCCCCCC
Q 002903 508 AAWQLYKAQEELIKVAKQYGIKLT---MFHGRGGTVGRGG 544 (868)
Q Consensus 508 a~W~Ly~Aq~~L~~v~~~~gV~l~---~FHGRGGsvgRGG 544 (868)
=+|+-|+ +|.++++++|.|+. =||..||.||-.-
T Consensus 71 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 107 (517)
T PLN02801 71 YDWSAYR---SLFELVQSFGLKIQAIMSFHQCGGNVGDAV 107 (517)
T ss_pred cCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788887 68888999999985 4999999998763
No 48
>KOG3831 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.00 E-value=24 Score=35.47 Aligned_cols=48 Identities=33% Similarity=0.548 Sum_probs=39.7
Q ss_pred CChHHHhcHHHHHHHHhccHHHHhhcCCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHH
Q 002903 461 EKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKV 522 (868)
Q Consensus 461 ETi~DL~~a~~il~~Ll~~p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v 522 (868)
..-+||+|-|.-.-..+.|-|. |||-|..-.-++.|++-||++++...
T Consensus 61 dafedlenppaav~av~kn~~l--------------s~s~k~sal~t~~wsiikakrq~l~~ 108 (196)
T KOG3831|consen 61 DAFEDLENPPAAVLAVLKNRFL--------------SDSFKESALATACWSIIKAKRQLLKN 108 (196)
T ss_pred HHHHhccCChHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999877777666653 89999999999999999999998653
No 49
>PLN02905 beta-amylase
Probab=35.87 E-value=32 Score=41.92 Aligned_cols=34 Identities=35% Similarity=0.713 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCC
Q 002903 508 AAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRGG 544 (868)
Q Consensus 508 a~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGsvgRGG 544 (868)
=+|+=|+ +|.+++++.|.|+.. ||.+||.||-.-
T Consensus 320 YdWsgY~---~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 320 YNWNGYK---RLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 3788886 688899999999875 999999987654
No 50
>PLN02705 beta-amylase
Probab=34.77 E-value=35 Score=41.53 Aligned_cols=32 Identities=31% Similarity=0.768 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCC
Q 002903 508 AAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGR 542 (868)
Q Consensus 508 a~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGsvgR 542 (868)
=+|+=|+ +|.++++++|.|+.. ||..||.||-
T Consensus 302 YdWsgY~---~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 302 YVWSGYR---ELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 3788886 688899999998875 9999998883
No 51
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=34.66 E-value=14 Score=30.95 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=33.6
Q ss_pred HHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 002903 334 FLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQ 382 (868)
Q Consensus 334 lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~ 382 (868)
||--.++||..+-.+||---| .+..+++.+.-.+|++|||+|-.
T Consensus 15 li~im~sf~~a~~~~~i~i~s-----~~~~l~~~l~k~~ys~ld~ee~m 58 (62)
T PF12133_consen 15 LIIIMRSFRIAIWNIQIIISS-----IVRQLFNPLDKKNYSELDDEEPM 58 (62)
T ss_pred HHHHHHHHHHHHHhHHhHHHH-----HHHHHhcccccccccccCccccc
Confidence 566789999999999986544 46667776665589999997643
No 52
>PLN02161 beta-amylase
Probab=33.60 E-value=38 Score=40.45 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCeEEE---ecCCCCCCCCCCCchhhhhhcCCCCcc-----cCceEeeccch
Q 002903 508 AAWQLYKAQEELIKVAKQYGIKLTM---FHGRGGTVGRGGGPTHLAILSQPPDTI-----HGSLRVTVQGE 570 (868)
Q Consensus 508 a~W~Ly~Aq~~L~~v~~~~gV~l~~---FHGRGGsvgRGGGPt~~aI~aqP~gtv-----~g~irvTeQGE 570 (868)
=+|+-|+ +|.+++++.|.|+.. ||..||.||--.+ ...|.... +-.|-.|.|-.
T Consensus 151 YdWsgY~---~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~------IpLP~WV~~~g~~~pDi~ftDr~G 212 (531)
T PLN02161 151 FKWSLYE---ELFRLISEAGLKLHVALCFHSNMHLFGGKGG------ISLPLWIREIGDVNKDIYYRDKNG 212 (531)
T ss_pred CCcHHHH---HHHHHHHHcCCeEEEEEEecccCCCCCCccC------ccCCHHHHhhhccCCCceEEcCCC
Confidence 3898887 688889999999875 9999999987655 23444333 33466666654
No 53
>PLN02389 biotin synthase
Probab=32.53 E-value=1.4e+02 Score=34.66 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcC
Q 002903 405 EIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECH 449 (868)
Q Consensus 405 ~~~e~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~G 449 (868)
...+.+++++.+++.|-..+...||.+-++..|+.+.+...++.+
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~ 255 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLP 255 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcc
Confidence 457889999999998877888899999999999999998888764
No 54
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=32.39 E-value=42 Score=36.24 Aligned_cols=123 Identities=22% Similarity=0.245 Sum_probs=82.0
Q ss_pred cccCChHHHhcH-HHHHHHHhccHHHHhhc--CCeeEE-EEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEe
Q 002903 458 PLFEKLADLEAA-PAALARLFSVDWYRNRI--NGKQEV-MIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMF 533 (868)
Q Consensus 458 PLFETi~DL~~a-~~il~~Ll~~p~yr~~l--~~~QeV-MlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~F 533 (868)
-.|||..|+++- -.|.+.|.+++...+|+ .|.--| =+||-|-++=--++.++=+| +|.++..+.||+..+.
T Consensus 12 l~~e~~~~se~~p~~vy~~l~~D~ev~A~l~maNv~av~RlgYNDHG~vHa~Iva~~Al-----~i~~lL~~~Gv~ps~v 86 (269)
T COG3294 12 LIEETLADSEAFPKDVYELLLNDEEVQAYLKMANVMAVGRLGYNDHGPVHARIVANSAL-----AIYKLLLEKGVKPSGV 86 (269)
T ss_pred cccccchhhhhchHHHHHHHhcCHHHHHHHHHhhhhhhhhhcccCCCceeeeeccchHH-----HHHHHHHhcCCCcccc
Confidence 368999999999 58999999999999999 332221 28999999988888887665 6778889999998754
Q ss_pred --------------------cCCCCCCCCCCCchhhhhhcCCCCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHH
Q 002903 534 --------------------HGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAAT 593 (868)
Q Consensus 534 --------------------HGRGGsvgRGGGPt~~aI~aqP~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~ 593 (868)
|-=|-||-|--++.|-+.++.+- ---.++--|.+|.-|.+-=.-.+.|+
T Consensus 87 ~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~~I-----------ldrIL~kiy~~~~k~~~~rsevlhAI 155 (269)
T COG3294 87 TDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLALDI-----------LDRILSKIYPDPEKAVRVRSEVLHAI 155 (269)
T ss_pred cccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhHHH-----------HHHHhhhhcCCHHHHHhHHHHHHHHh
Confidence 44444555555555555555430 11233444566555555444444444
Q ss_pred HHc
Q 002903 594 LEH 596 (868)
Q Consensus 594 l~~ 596 (868)
.-+
T Consensus 156 ~ch 158 (269)
T COG3294 156 YCH 158 (269)
T ss_pred hcc
Confidence 433
No 55
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=32.10 E-value=3.4e+02 Score=28.88 Aligned_cols=139 Identities=9% Similarity=0.136 Sum_probs=84.7
Q ss_pred CCCChHHhhhHHHHHHH-------HHHhcCCccchhhH-HHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCC
Q 002903 300 VFTNVEQFLEPLELCYR-------SLCSCGDRAIADGS-LLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIG 371 (868)
Q Consensus 300 ~y~~~~ell~dL~~i~~-------sL~~~~~~~~a~~~-L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~ 371 (868)
.+.+++|+++.+..-.. .+.-.|++.+.... +.++++.++..|+|.+ +| -|-....+++.+++..+...
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~-le--TnG~~~~~~~~~l~~~~D~~ 93 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCA-IE--TAGDAPASKLLPLAKLCDEV 93 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEE-EE--CCCCCCHHHHHHHHHhcCEE
Confidence 35688888887544322 22234555545444 7899999999999875 22 23333446777887776553
Q ss_pred --CCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC-chhHHHhh-cCCChhhHHHHHHHHHH
Q 002903 372 --SYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPAD-NFGAYIIS-MATAPSDVLAVELLQRE 447 (868)
Q Consensus 372 --~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~~~~-a~g~yIIS-mt~s~sDvL~V~~L~ke 447 (868)
|+-.+|++. -..++- -....+++.++.+++.+.. -+..-||. ++.+..++-++.-+.+.
T Consensus 94 l~DiK~~d~~~-~~~~tG----------------~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 94 LFDLKIMDATQ-ARDVVK----------------MNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred EEeeccCCHHH-HHHHHC----------------CCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 677777632 222221 0136788888888887643 22333444 46788888888777777
Q ss_pred cCCCCCCccccc
Q 002903 448 CHVKQPLRVVPL 459 (868)
Q Consensus 448 ~Gl~~~l~VvPL 459 (868)
.++. ++.+.|-
T Consensus 157 l~~~-~~~llpy 167 (213)
T PRK10076 157 LGIK-QIHLLPF 167 (213)
T ss_pred cCCc-eEEEecC
Confidence 7653 5555553
No 56
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=32.07 E-value=85 Score=31.08 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002903 152 VPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIED 221 (868)
Q Consensus 152 vP~~~~~l~~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~ 221 (868)
+=.+.-+|..+++++| |+-++|||.. .+++.|++++++
T Consensus 94 lDalIGrLraafee~G-------------------g~pe~NPf~~-------------~~vr~yLr~vr~ 131 (132)
T PF04852_consen 94 LDALIGRLRAAFEEHG-------------------GHPEANPFAA-------------RAVRLYLREVRD 131 (132)
T ss_pred HHHHHHHHHHHHHHhC-------------------CCCCCCchhh-------------HHHHHHHHHHhc
Confidence 3355567777776664 5567999954 456788888763
No 57
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=27.90 E-value=4.1e+02 Score=27.89 Aligned_cols=130 Identities=12% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCChHHhhhHHHHHHHH-------HHhcCCccchhhH-HHHHHHHHHHhCCcccccccccccchH--HHHHHHHHHhcCC
Q 002903 301 FTNVEQFLEPLELCYRS-------LCSCGDRAIADGS-LLDFLRQVSTFGLSLVRLDIRQESDRH--TDVIDAITKHLEI 370 (868)
Q Consensus 301 y~~~~ell~dL~~i~~s-------L~~~~~~~~a~~~-L~~lir~v~~FGfhla~LDIRQ~S~~H--~~al~el~~~~g~ 370 (868)
+.+++++++.+..+.+- +.-.|++.+.... +.++++.++.-|+.+ -|=-|.... .+.+.++++..+.
T Consensus 45 ~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~g~~~---~i~TNG~~~~~~~~~~~ll~~~d~ 121 (235)
T TIGR02493 45 EVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKELGIHT---CLDTSGFLGGCTEAADELLEYTDL 121 (235)
T ss_pred ECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHCCCCE---EEEcCCCCCccHHHHHHHHHhCCE
Confidence 45777777766655432 2224555555544 568888888878643 232333211 3455666654432
Q ss_pred C--CCCCCCHHHHHHHHHhHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCchhHHHhhc--CCChhhHHHHHHHHH
Q 002903 371 G--SYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISM--ATAPSDVLAVELLQR 446 (868)
Q Consensus 371 ~--~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~e~l~~f~~i~~~~~~a~g~yIISm--t~s~sDvL~V~~L~k 446 (868)
. +-..++++.... +.+. ....+++.++.+.+.+....-.+++.. ..+..|+.++.-+++
T Consensus 122 v~isl~~~~~~~~~~-----~~g~------------~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~ 184 (235)
T TIGR02493 122 VLLDIKHFNPEKYKK-----LTGV------------SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVK 184 (235)
T ss_pred EEEeCCCCCHHHHHH-----HHCC------------CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHH
Confidence 1 334444443211 1111 114577778878777654434555533 457889999999999
Q ss_pred HcCC
Q 002903 447 ECHV 450 (868)
Q Consensus 447 e~Gl 450 (868)
..|.
T Consensus 185 ~l~~ 188 (235)
T TIGR02493 185 TLPN 188 (235)
T ss_pred hCCC
Confidence 8884
No 58
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=27.65 E-value=1.3e+02 Score=28.63 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHhC
Q 002903 720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLW-SFGEKLRVNYEETKGLLLQIAG 771 (868)
Q Consensus 720 ~idnvem~LaKaD~~Ia~~Y~~l~~d~~~~-~i~~~I~~E~~~T~~~vl~itg 771 (868)
+.+.+.-.+...+-.|...|..++.|+.+. .+...|+++. .+..+|..+..
T Consensus 54 l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~~~~-~Ae~Av~~~~~ 105 (123)
T PF05524_consen 54 LAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIREGK-NAEYAVQEVIE 105 (123)
T ss_dssp HHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 334455555677779999999999999976 8999999999 77777777764
No 59
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.62 E-value=1e+02 Score=23.08 Aligned_cols=24 Identities=33% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhhc
Q 002903 39 IEETFKRLVGELNKSPEEIFDALKN 63 (868)
Q Consensus 39 ~~~~~~~L~~~~g~~~e~i~~~L~~ 63 (868)
|-.-+... ++.|+|+++|.+.|..
T Consensus 5 W~~Li~eA-~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 5 WVELIKEA-KESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHH-HHTT--HHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHh
Confidence 56677777 7999999999999864
No 60
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=23.80 E-value=2.5e+02 Score=29.92 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHc
Q 002903 402 KTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQREC 448 (868)
Q Consensus 402 ~s~~~~e~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~ 448 (868)
.+|...+++..++.+...|.+.+. |+.|+++.+|++.++-+.+++
T Consensus 130 ~tp~~~~l~~~~~~~~~~gaDivK--ia~~a~~~~D~~~ll~~~~~~ 174 (228)
T TIGR01093 130 KTPSWEEIVERLEKALSYGADIVK--IAVMANSKEDVLTLLEITNKV 174 (228)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEE--EEeccCCHHHHHHHHHHHHHH
Confidence 345566778888888888876555 788999999999999888665
No 61
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=20.24 E-value=1.6e+02 Score=25.82 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=31.0
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecC
Q 002903 499 SGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHG 535 (868)
Q Consensus 499 S~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHG 535 (868)
.+|.-.+.-+.|.-++-+..|.-.|+++||.+..-.-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~yka~~~Gi~v~~v~~ 78 (82)
T TIGR01766 42 KSKYLRRKLHQWSFRKLISKIKYKAEEYGIEVIEVNP 78 (82)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHcCCeEEEeCc
Confidence 3455566778999999999999999999999987543
Done!