Your job contains 1 sequence.
>002904
MLRIFSCNNNSVKLLQMCINCNFGTLIFVRNWCHIHANIVSGGIMAVEASSKPSRVYDFD
DDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDKTTVSSSKVLPVKSPPP
SQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVK
KEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSD
DEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKA
SSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTA
KATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPH
GVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLE
GCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPP
GLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWN
DPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIA
VATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE
VELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML
NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRV
DLDRAKKGKPPLMKDSDGKRKRNLAPEA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002904
(868 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2173862 - symbol:TOP1BETA "DNA topoisomerase 1... 2062 2.3e-213 1
UNIPROTKB|Q84ZL5 - symbol:OJ1066_B03.125 "Os08g0154600 pr... 1938 1.4e-212 3
UNIPROTKB|A8IDM1 - symbol:TOP1 "DNA topoisomerase I" spec... 1337 3.1e-138 2
POMBASE|SPBC1703.14c - symbol:top1 "DNA topoisomerase I" ... 1169 5.1e-128 3
DICTYBASE|DDB_G0283205 - symbol:top1 "DNA topoisomerase I... 1138 8.4e-121 2
ASPGD|ASPL0000055668 - symbol:top1 species:162425 "Emeric... 1110 4.7e-118 2
UNIPROTKB|Q5BGS7 - symbol:AN0253.2 "Topoisomerase I [Sour... 1110 4.7e-118 2
CGD|CAL0000708 - symbol:TOP1 species:5476 "Candida albica... 1060 7.3e-115 3
UNIPROTKB|Q59XR0 - symbol:TOP1 "Likely DNA topoisomerase ... 1060 7.3e-115 3
FB|FBgn0004924 - symbol:Top1 "Topoisomerase 1" species:72... 1042 8.2e-114 3
SGD|S000005366 - symbol:TOP1 "Topoisomerase I" species:49... 1062 2.6e-113 2
WB|WBGene00006595 - symbol:top-1 species:6239 "Caenorhabd... 1052 6.2e-112 2
UNIPROTKB|O17966 - symbol:top-1 "DNA topoisomerase 1" spe... 1052 6.2e-112 2
UNIPROTKB|P11387 - symbol:TOP1 "DNA topoisomerase 1" spec... 1051 2.7e-111 2
UNIPROTKB|Q75CB7 - symbol:AGOS_ACL008C "ACL008Cp" species... 1071 9.0e-111 2
UNIPROTKB|Q7YR26 - symbol:TOP1 "DNA topoisomerase 1" spec... 1051 1.1e-110 2
UNIPROTKB|F1SDV7 - symbol:TOP1 "Uncharacterized protein" ... 1045 2.4e-110 2
UNIPROTKB|I3LHM3 - symbol:TOP1 "Uncharacterized protein" ... 1045 2.4e-110 2
UNIPROTKB|F1MN93 - symbol:TOP1 "Uncharacterized protein" ... 1045 3.0e-110 2
UNIPROTKB|Q7S0F7 - symbol:NCU09118 "DNA topoisomerase I" ... 1019 4.9e-110 2
RGD|621246 - symbol:Top1 "topoisomerase (DNA) I" species:... 1048 6.3e-110 2
UNIPROTKB|Q07050 - symbol:TOP1 "DNA topoisomerase 1" spec... 1044 5.6e-109 2
MGI|MGI:98788 - symbol:Top1 "topoisomerase (DNA) I" speci... 1041 5.6e-109 2
UNIPROTKB|F1PUE0 - symbol:TOP1 "Uncharacterized protein" ... 1037 7.1e-109 2
UNIPROTKB|F1M1S6 - symbol:F1M1S6 "Uncharacterized protein... 1025 5.0e-108 2
ZFIN|ZDB-GENE-060616-217 - symbol:top1l "topoisomerase (D... 1023 1.3e-107 2
UNIPROTKB|F1NPT1 - symbol:TOP1 "Uncharacterized protein" ... 1021 1.7e-107 2
UNIPROTKB|Q90WS1 - symbol:top1beta "Topoisomerase I beta"... 1021 2.7e-107 2
UNIPROTKB|Q24BB2 - symbol:TTHERM_01299650 "Eukaryotic DNA... 665 7.2e-107 3
UNIPROTKB|F1NXP4 - symbol:TOP1MT "Uncharacterized protein... 1055 1.2e-106 1
UNIPROTKB|Q90WS0 - symbol:top1alpha "Topoisomerase I alph... 1019 1.9e-106 2
UNIPROTKB|I3LTP0 - symbol:LOC100628093 "Uncharacterized p... 1052 2.5e-106 1
UNIPROTKB|Q969P6 - symbol:TOP1MT "DNA topoisomerase I, mi... 1050 4.0e-106 1
ZFIN|ZDB-GENE-040624-2 - symbol:top1mt "mitochondrial top... 1049 5.1e-106 1
UNIPROTKB|A9Q1D5 - symbol:TOP1MT "DNA topoisomerase I, mi... 1041 3.6e-105 1
MGI|MGI:1920210 - symbol:Top1mt "DNA topoisomerase 1, mit... 986 2.4e-99 1
RGD|1303177 - symbol:Top1mt "topoisomerase (DNA) I, mitoc... 984 3.9e-99 1
UNIPROTKB|F1SEV4 - symbol:F1SEV4 "Uncharacterized protein... 980 1.0e-98 1
ZFIN|ZDB-GENE-030131-5390 - symbol:top1 "topoisomerase (D... 924 2.3e-95 2
UNIPROTKB|Q7RE42 - symbol:PY05226 "Eukaryotic DNA topoiso... 606 2.8e-84 3
UNIPROTKB|E5RIC7 - symbol:TOP1MT "DNA topoisomerase I, mi... 714 1.6e-70 1
UNIPROTKB|E5RFS0 - symbol:TOP1MT "DNA topoisomerase I, mi... 493 9.9e-47 1
UNIPROTKB|E5RJ95 - symbol:TOP1MT "DNA topoisomerase I, mi... 449 8.0e-42 1
UNIPROTKB|E5RGE7 - symbol:TOP1MT "DNA topoisomerase I, mi... 216 1.3e-16 1
UNIPROTKB|E5RGR2 - symbol:TOP1MT "DNA topoisomerase I, mi... 216 1.3e-16 1
UNIPROTKB|E5RGR4 - symbol:TOP1MT "DNA topoisomerase I, mi... 216 1.3e-16 1
UNIPROTKB|H0YC03 - symbol:TOP1MT "DNA topoisomerase I, mi... 202 4.1e-15 1
UNIPROTKB|E5RFE3 - symbol:TOP1MT "DNA topoisomerase I, mi... 137 3.8e-08 1
>TAIR|locus:2173862 [details] [associations]
symbol:TOP1BETA "DNA topoisomerase 1 beta" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;ISS;IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA;IC;IBA] [GO:0031490
"chromatin DNA binding" evidence=IBA] [GO:0016020 "membrane"
evidence=IDA] [GO:0001676 "long-chain fatty acid metabolic process"
evidence=RCA] [GO:0002213 "defense response to insect"
evidence=RCA] [GO:0006633 "fatty acid biosynthetic process"
evidence=RCA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 EMBL:CP002688
GO:GO:0005694 GO:GO:0016020 GO:GO:0031490 GO:GO:0006265
EMBL:AB015479 SUPFAM:SSF56349 GO:GO:0003918 HOGENOM:HOG000105469
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 HSSP:P11387 OMA:LGKNHII
ProtClustDB:CLSN2686978 EMBL:AK226832 IPI:IPI00524700
RefSeq:NP_200342.1 UniGene:At.6889 ProteinModelPortal:Q9FJ79
SMR:Q9FJ79 STRING:Q9FJ79 PRIDE:Q9FJ79 EnsemblPlants:AT5G55310.1
GeneID:835624 KEGG:ath:AT5G55310 TAIR:At5g55310 InParanoid:Q9FJ79
PhylomeDB:Q9FJ79 Genevestigator:Q9FJ79 Uniprot:Q9FJ79
Length = 917
Score = 2062 (730.9 bits), Expect = 2.3e-213, P = 2.3e-213
Identities = 444/845 (52%), Positives = 536/845 (63%)
Query: 45 MAVEASSKP-----SRVYDFDDDEDGPAVFKRNT-AASRQNLANPEVKRPSSSTANGQNS 98
MA EA KP Y+ +D++D P VFKRN+ A+ N +P + ++A G
Sbjct: 1 MATEAFVKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSP-INNAMRNSAIGSTK 59
Query: 99 NAPKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRSPVKSPVRSPV-------- 150
++P ++SP++ RS V
Sbjct: 60 SSPPMRSPLTSPNRSASSSTRSSMMKPALPSSSSVQRSTLKSPLRDD-RSVVAKERNGFG 118
Query: 151 KSP-VANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
K+P V+ S + DD+ P L + KE K + K + R +G
Sbjct: 119 KAPSVSKSDDEDSEDDK----PLSARLKLDSKEVTKQPSSSGRGSTQQAVQKS-NMRPQG 173
Query: 210 NSKNVNQGIGASKADAAISEVNVKTDPEDSDDE-VPLSSRFPK-SNAGTSGAKP-IDSDE 266
S + + +A + S V KT S + V + + P +N +G KP +
Sbjct: 174 LSDYTKKKVLDERAPMS-STVQTKTSVGTSSSKPVHIEQKRPLVNNIDRNGLKPKTEGHS 232
Query: 267 KKPLASKVQQNGSTSRETQQKSS--SVPVKRPLQXXXXXXXXXXXXXXXXDTSXXX-XXX 323
+ A + + GS+S ++ K S P RP++ +
Sbjct: 233 SQAPAKRPLEKGSSSNQSSVKRPKLSEPA-RPVKVEQGSHISATQDAKGKNLDASKPLRA 291
Query: 324 XXXXXXXXXADDDDHIPISQRMKNSAPSVKKSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 383
+D DDH+PI+ RMK+ + S KS
Sbjct: 292 NQATVKEDNSDGDDHVPIASRMKSDS-SNNKSSSAKPSSSKMIASSSRTIAQKPNKWVKD 350
Query: 384 XQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATM 443
+YSKS+K LP SGDGQKKW TL HNGVIFPPPY HGVK+L++GK V+LTPEQEEVATM
Sbjct: 351 SKYSKSSKSLP-SGDGQKKWKTLQHNGVIFPPPYKRHGVKILFQGKPVDLTPEQEEVATM 409
Query: 444 FAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXX 503
FAVM +T+Y +KPKFRENFWNDWRKLLGKNH+I++L+ CDF PIY+W+
Sbjct: 410 FAVMRETEYYKKPKFRENFWNDWRKLLGKNHMIKSLDDCDFTPIYEWYMQEKETKKQMTA 469
Query: 504 XXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSD 563
YMWA++DGV+E++GNFRVEPPGLFRGRGEHPKMGKLKKRI+P D
Sbjct: 470 EEKRIVKEEKLKQEEKYMWAVLDGVRERIGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCD 529
Query: 564 ITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 623
ITINIGK+ PIPECPIPGE WKEVKHDNTVTWLAFW+DPINPKEFKYVFLAASSSLKGQS
Sbjct: 530 ITINIGKEAPIPECPIPGERWKEVKHDNTVTWLAFWSDPINPKEFKYVFLAASSSLKGQS 589
Query: 624 DREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEAD 683
D+EKYEKARKL ++I SIRAAYTKDF ++D T+RQIAVATYLIDKLALRAGNEKDDDEAD
Sbjct: 590 DKEKYEKARKLHNHIGSIRAAYTKDFNNKDVTKRQIAVATYLIDKLALRAGNEKDDDEAD 649
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLF 743
TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLF
Sbjct: 650 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLF 709
Query: 744 DKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEV 803
D+LDT+KLN HLKELM GLTAKVFRTYNASITLD ML+K T DGDV K+ VYQ+ANKEV
Sbjct: 710 DELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLMLSKETRDGDVPEKVVVYQQANKEV 769
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRN 863
AIICNHQRTVSK+H AQ+ +L KIE+L+ +K+L +DLDRAKKG+ PLM SDGKRKRN
Sbjct: 770 AIICNHQRTVSKSHGAQVEKLAVKIEELREQIKELNIDLDRAKKGRTPLM-GSDGKRKRN 828
Query: 864 LAPEA 868
L PEA
Sbjct: 829 LTPEA 833
>UNIPROTKB|Q84ZL5 [details] [associations]
symbol:OJ1066_B03.125 "Os08g0154600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0016020 GO:GO:0006260 GO:GO:0009793
GO:GO:0006338 GO:GO:0009965 EMBL:AP008214 GO:GO:0048645
GO:GO:0009933 GO:GO:0019827 GO:GO:0010075 EMBL:CM000145
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
GO:GO:0048439 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
HSSP:P11387 ProtClustDB:CLSN2686978 EMBL:AP003940
RefSeq:NP_001061015.1 UniGene:Os.21861
EnsemblPlants:LOC_Os08g05840.1 GeneID:4344685 KEGG:osa:4344685
Uniprot:Q84ZL5
Length = 916
Score = 1938 (687.3 bits), Expect = 1.4e-212, Sum P(3) = 1.4e-212
Identities = 385/637 (60%), Positives = 452/637 (70%)
Query: 237 EDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSV-PVKR 295
+DS+DE PL++RF K S + I S + K L++ ++ + S+ S+S +KR
Sbjct: 212 DDSEDEKPLAARFSKVTGNASAS--ISSSKDKVLSASIKASSSSKMSNNDASTSRNSIKR 269
Query: 296 PLQXXXXXXXXXXXXXXXXDTSXXXXXXXXXXXXXXXADDDDHIPISQRMKNSAPSVKK- 354
P+ D S ADD+D++P+SQR+K S K
Sbjct: 270 PIDNNNQTSSALKKARPS-DVSASASVKREPK-----ADDNDNVPLSQRLKMGESSKSKP 323
Query: 355 ---SVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYSKSTKMLPGSGDGQKKWTTLVHNGV 411
++ Q+SK+ K+ PGSG GQK WTTLVH+GV
Sbjct: 324 PAKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQK-WTTLVHSGV 382
Query: 412 IFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG 471
IFPPPY PHGVKMLY G+ V+LTPEQEEVATMFAVM DTDY K F +NF+ DWRK+LG
Sbjct: 383 IFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILG 442
Query: 472 KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEK 531
KNHVI+ E CDF PIY+WH YMWAIVDGVKEK
Sbjct: 443 KNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEK 502
Query: 532 VGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDN 591
VGNFRVEPPGLFRGRGEHPKMGKLK+RI+PSDITINIGK PIPECPIPGESWKEVKHDN
Sbjct: 503 VGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDN 562
Query: 592 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVS 651
TVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSD+EKYEK+RKLK ++H IR YTKDF S
Sbjct: 563 TVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRS 622
Query: 652 RDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKD 711
+D T++QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTLKV NV C+PPNKL+FDFLGKD
Sbjct: 623 KDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKD 682
Query: 712 SIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYN 771
SI+Y NTVEVEL VYKAI +F+ GKK DLFDKLDT +LNAHLK+LMPGLTAKVFRTYN
Sbjct: 683 SIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYN 742
Query: 772 ASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL 831
ASITLD +L+K T DG + KI VYQRANKEVAIICNHQR+VSK+H +QM+RL EKI++L
Sbjct: 743 ASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDEL 802
Query: 832 KGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEA 868
K +L+ DL + +KGK L D DGK KRNLAPEA
Sbjct: 803 KAQRDELKADLSKVRKGKN-LGNDKDGKPKRNLAPEA 838
Score = 147 (56.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 65/231 (28%), Positives = 92/231 (39%)
Query: 147 RSPVKSPVANSKESSPLDDR----LKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
+S +K P K DD L++ + L KK + G NDS+DDKP
Sbjct: 103 KSKLKRPFVEDKSDDSEDDHKPIGLRRKVEDRNL---KKPAVGSGTA-----NDSDDDKP 154
Query: 203 LSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPI 262
LS LK NS A+KA + ++ +DS+D+ PL+SR P + A G
Sbjct: 155 LS--LKINSTKTPSS-SANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGNVS 211
Query: 263 D-SDEKKPLA---SKVQQNGSTS-RETQQKSSSVPVKRPLQXXXXXXXXXXXXXXXX--- 314
D S+++KPLA SKV N S S ++ K S +K
Sbjct: 212 DDSEDEKPLAARFSKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSRNSIKRPI 271
Query: 315 ----DTSXXXXXXXXXXXXXXX-------ADDDDHIPISQRMKNSAPSVKK 354
TS ADD+D++P+SQR+K S K
Sbjct: 272 DNNNQTSSALKKARPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSK 322
Score = 95 (38.5 bits), Expect = 1.4e-212, Sum P(3) = 1.4e-212
Identities = 39/149 (26%), Positives = 69/149 (46%)
Query: 146 VRSPVKS-PVANSKESSPLD----DRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDD 200
V P++ P ++S PL + K+ HN+ +V K + + KSDD++ +D
Sbjct: 64 VSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSE-DDH 122
Query: 201 KPLSARLKGNSKNVNQ-GIGASKA-----DAAIS-EVNVKTDPEDSDDEVPLSSRFPKSN 253
KP+ R K +N+ + +G+ A D +S ++N P S ++ + PK
Sbjct: 123 KPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPKIE 182
Query: 254 AGTSGAKPIDSDEKKPLASKVQQNGSTSR 282
DS++ KPLAS++ N + R
Sbjct: 183 QPGD-----DSEDDKPLASRLPTNAALKR 206
Score = 61 (26.5 bits), Expect = 1.4e-212, Sum P(3) = 1.4e-212
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 59 FD-DDEDGPAVFKRNTAASRQNLANPEVKRPSSSTA 93
FD DDE+GP FKR++ S +N P + SS A
Sbjct: 9 FDNDDEEGPISFKRSST-SVKNRPTPTKQEGSSGNA 43
Score = 49 (22.3 bits), Expect = 5.0e-203, Sum P(2) = 5.0e-203
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 238 DSDDEV-PLSSRFPKSNAGTSGAK-PIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKR 295
D+DDE P+S F +S+ P + A ++ + + QQK+ V R
Sbjct: 10 DNDDEEGPIS--FKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVA-SNQQKNGLTGVSR 66
Query: 296 PLQ 298
PLQ
Sbjct: 67 PLQ 69
Score = 39 (18.8 bits), Expect = 5.7e-202, Sum P(2) = 5.7e-202
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 60 DDDEDGPAVFKRNTAASRQNLANPEV 85
D D+D P K N+ + + AN +
Sbjct: 148 DSDDDKPLSLKINSTKTPSSSANKAI 173
>UNIPROTKB|A8IDM1 [details] [associations]
symbol:TOP1 "DNA topoisomerase I" species:3055
"Chlamydomonas reinhardtii" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 EMBL:DS496116 RefSeq:XP_001703256.1
STRING:A8IDM1 EnsemblPlants:EDP05938 GeneID:5728813
KEGG:cre:CHLREDRAFT_114171 ProtClustDB:CLSN2686978
BioCyc:CHLAMY:CHLREDRAFT_114171-MONOMER Uniprot:A8IDM1
Length = 586
Score = 1337 (475.7 bits), Expect = 3.1e-138, Sum P(2) = 3.1e-138
Identities = 267/477 (55%), Positives = 329/477 (68%)
Query: 387 SKSTKMLPGSG-DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFA 445
+K +K PGS GQ W TL H GV+FPP Y PHGVK LY GK V+LTP+QEEVATMFA
Sbjct: 14 AKRSKKEPGSSKSGQVMWKTLKHAGVLFPPEYEPHGVKPLYDGKPVDLTPDQEEVATMFA 73
Query: 446 VMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXX 505
VM +TDYM K F +NFW ++++LGK HVI++L+ CDF PIYDWH
Sbjct: 74 VMKETDYMNKKVFLDNFWEGFKEVLGKGHVIKDLKKCDFTPIYDWHMAQREAKKGISKEE 133
Query: 506 XXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDIT 565
Y A VDG E VGNFRVEPPGLFRGRGEHPKMGK+KKR+ P DIT
Sbjct: 134 KDRIKKEKDEKEAKYKVAYVDGRPEPVGNFRVEPPGLFRGRGEHPKMGKIKKRVYPRDIT 193
Query: 566 INIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDR 625
INIG++ P+PE P PG++WKEVKHD+TVTWLA+W D I+ K++KYVFL A+S+ K SD
Sbjct: 194 INIGENEPVPEHPYPGQTWKEVKHDHTVTWLAYWKDTISTKDYKYVFLGATSTFKADSDL 253
Query: 626 EKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTV 685
KYEKARKLK+ I +R Y +D+ S D +RQ+ VA Y IDKLALRAG+EKD+DEADTV
Sbjct: 254 AKYEKARKLKEIIVDVRKNYERDWDSSDQRKRQMGVAMYFIDKLALRAGHEKDEDEADTV 313
Query: 686 GCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ----TGKK--QN 739
GCCTLKV N+E + NK+KFDFLGKDSI+Y N VEV+ VYK + +F+ TGK+ Q
Sbjct: 314 GCCTLKVENIEIMGDNKVKFDFLGKDSIRYENIVEVDPRVYKNLEKFKRIDHTGKRKQQG 373
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK--GTGDG-DVAVKIDV- 795
D LF+ D LN LK +M GL+ KVFRTYNASI LD +L++ T G A +D
Sbjct: 374 DQLFETFDAQDLNKELKNIMDGLSVKVFRTYNASIVLDRLLSEWEATKKGHSTAQTVDQK 433
Query: 796 ---YQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK 849
Y ANKEVAI+CNHQR+V KTH+ QM ++ EK+ + L +L +L A+KGK
Sbjct: 434 KVDYDIANKEVAILCNHQRSVPKTHTNQMEKIQEKLAGMNKELAELEDELRAAQKGK 490
Score = 37 (18.1 bits), Expect = 3.1e-138, Sum P(2) = 3.1e-138
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 70 KRNTAASRQNLANPEVKRPSSSTANGQ 96
KR T +++ A K P SS + GQ
Sbjct: 3 KRATTPKKESSAKRSKKEPGSSKS-GQ 28
>POMBASE|SPBC1703.14c [details] [associations]
symbol:top1 "DNA topoisomerase I" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003917
"DNA topoisomerase type I activity" evidence=ISO;IMP] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006265 "DNA topological
change" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IGI] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0007076 "mitotic chromosome condensation"
evidence=ISO] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IGI]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 PomBase:SPBC1703.14c GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0000790 GO:GO:0006333 GO:GO:0007076 GO:GO:0042790
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741 EMBL:X06201
PIR:S03329 PIR:T50327 RefSeq:NP_596209.1 ProteinModelPortal:P07799
SMR:P07799 STRING:P07799 EnsemblFungi:SPBC1703.14c.1 GeneID:2540032
KEGG:spo:SPBC1703.14c OMA:EQVGNFR OrthoDB:EOG4BK8C3
NextBio:20801174 Uniprot:P07799
Length = 814
Score = 1169 (416.6 bits), Expect = 5.1e-128, Sum P(3) = 5.1e-128
Identities = 242/471 (51%), Positives = 302/471 (64%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D +KWTTL HNGVIF PPY LP VK++Y G VNL PE EEVA +A ML+TD+ +
Sbjct: 190 DDTQKWTTLEHNGVIFAPPYEPLPKNVKLIYDGNPVNLPPEAEEVAGFYAAMLETDHAKN 249
Query: 456 PKFRENFWNDWRKLLGK---NHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXX 512
P F++NF+ D+ K+ + NH I+ CDF ++
Sbjct: 250 PVFQDNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQK 309
Query: 513 XXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
Y W I+DG KEKVGNFR+EPPGLFRGRG HPK G LK+R+ P ITINIG+ V
Sbjct: 310 KDEEEEKYKWCILDGRKEKVGNFRIEPPGLFRGRGSHPKTGSLKRRVYPEQITINIGEGV 369
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
P+PE P+PG W EVKHDNTVTWLA W++ IN KYVFLAA SSLKGQSD +KYEK+R
Sbjct: 370 PVPE-PLPGHQWAEVKHDNTVTWLATWHENIN-NNVKYVFLAAGSSLKGQSDLKKYEKSR 427
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
KLKDYI IR Y KD S RQ A YLID ALRAGNEK +DEADTVGCC+L+
Sbjct: 428 KLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLIDVFALRAGNEKGEDEADTVGCCSLRY 487
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQNDDLFDKLDTAKL 751
+V PP + FDFLGKDSI+Y N VEV+ V+K + F+ KK+ D +FD+L T L
Sbjct: 488 EHVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKRPPKKEGDLIFDRLSTNSL 547
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQR 811
N +L LM GL+AKVFRTYNAS T+ L K + +A KI Y RAN+ VAI+CNHQR
Sbjct: 548 NKYLTSLMDGLSAKVFRTYNASYTMAEELKKMPKNLTLADKILFYNRANRTVAILCNHQR 607
Query: 812 TVSKTHSAQMSRLTEKIEDLKGV---LKDLRVDLD-RAKKGKPPLMKDSDG 858
+V+K H QM R E+I+ L+ L+ + ++L+ + K KP L+ +G
Sbjct: 608 SVTKNHDVQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEG 658
Score = 69 (29.3 bits), Expect = 7.2e-124, Sum P(2) = 7.2e-124
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 190 LKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAA----ISE-VNVKTDPEDSDDEVP 244
+ S D+DS + +G+SK ++ ++D++ +SE +N K+ E +D++P
Sbjct: 1 MSSSDSDSVSLSIRRRQRRGSSKRISMKESDEESDSSENHPLSESLNKKSKSESDEDDIP 60
Query: 245 LSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNG 278
+ R S S +S KK +KV NG
Sbjct: 61 IRKRRASSKKNMS-----NSSSKK--RAKVMGNG 87
Score = 64 (27.6 bits), Expect = 5.1e-128, Sum P(3) = 5.1e-128
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 158 KESSPLDDRLKQSPQHNALAVVKKEEIKDG--NGLKSDDNDSEDDKPLSARLKGNSKNVN 215
KE ++ K SP+H ++ K K+G + +K +++D++D PL A ++ ++
Sbjct: 99 KEEEDFNEIAKPSPKHKRVS--KANGSKNGAKSAVKKEESDTDDSVPLRAV---STVSLT 153
Query: 216 QGIGASKADAAISEVNVKTDPEDSDDE 242
+ A+ ++ D ED D++
Sbjct: 154 PYKSELPSGASTTQNRSPNDEEDEDED 180
Score = 59 (25.8 bits), Expect = 5.1e-128, Sum P(3) = 5.1e-128
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 60 DDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPK 102
+ DED + KR A+S++N++N K+ + NG N K
Sbjct: 53 ESDEDDIPIRKRR-ASSKKNMSNSSSKKRAKVMGNGGLKNGKK 94
Score = 58 (25.5 bits), Expect = 1.1e-122, Sum P(2) = 1.1e-122
Identities = 25/96 (26%), Positives = 36/96 (37%)
Query: 191 KSDDNDSEDDKPLSARLKGNSKNVNQ----------GIGASKADAAISEVNVKTDPEDSD 240
KS EDD P+ R + KN++ G G K + V + D +
Sbjct: 49 KSKSESDEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEEEDFNEIA 108
Query: 241 DEVPLSSRFPKSNAGTSGAKPI------DSDEKKPL 270
P R K+N +GAK D+D+ PL
Sbjct: 109 KPSPKHKRVSKANGSKNGAKSAVKKEESDTDDSVPL 144
Score = 52 (23.4 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 16/78 (20%), Positives = 34/78 (43%)
Query: 210 NSKNVNQGIGASKADAAISEVNVKTDPEDSD--DEVPLSSRFPKSNAGTSGAKPIDSDEK 267
+S +V+ I + + +++K E+SD + PLS K + S I ++
Sbjct: 5 DSDSVSLSIRRRQRRGSSKRISMKESDEESDSSENHPLSESLNKKSKSESDEDDIPIRKR 64
Query: 268 KPLASKVQQNGSTSRETQ 285
+ + K N S+ + +
Sbjct: 65 RASSKKNMSNSSSKKRAK 82
Score = 40 (19.1 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 335 DDDHIPISQRMKNSAPSVKKS 355
D+D IPI +R +S ++ S
Sbjct: 55 DEDDIPIRKRRASSKKNMSNS 75
>DICTYBASE|DDB_G0283205 [details] [associations]
symbol:top1 "DNA topoisomerase I" species:44689
"Dictyostelium discoideum" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS;IBA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006260 "DNA
replication" evidence=ISS;IBA] [GO:0031298 "replication fork
protection complex" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 dictyBase:DDB_G0283205 GO:GO:0005524 GO:GO:0007059
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0006260 GO:GO:0006338
EMBL:AAFI02000051 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
HSSP:P11387 RefSeq:XP_639222.1 ProteinModelPortal:Q54RC3 SMR:Q54RC3
STRING:Q54RC3 EnsemblProtists:DDB0234191 GeneID:8623995
KEGG:ddi:DDB_G0283205 OMA:EHQAFLV Uniprot:Q54RC3
Length = 893
Score = 1138 (405.7 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 228/464 (49%), Positives = 305/464 (65%)
Query: 398 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPK 457
DG K WTTL+HNG +FPP Y+PHG+K +Y GK V LTP+QEEVAT +A L+TD+++K
Sbjct: 308 DGTK-WTTLIHNGPVFPPAYVPHGIKFMYDGKVVKLTPKQEEVATFYANYLETDHVKKQA 366
Query: 458 FRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXX 515
F++NF+ +++ LL + +++ ++ CDF I+
Sbjct: 367 FKDNFFKEFKGLLTSEQKEIVKKMDKCDFSHIHTHLKTKKEQRKARSKEEKDAETAEKKK 426
Query: 516 XXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIP 575
+ +A +DG KEKVGN+ +EPPGLF GRG+HPK G LK+RI PSD+T+NIG+ IP
Sbjct: 427 IQEKHGFATIDGFKEKVGNYMIEPPGLFLGRGQHPKTGMLKQRIMPSDVTLNIGEGEVIP 486
Query: 576 ECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLK 635
PIPGE WKE+ H+NTVTWLAFW + +N FKYV+LA SS +KGQ+DR+K+E AR LK
Sbjct: 487 PSPIPGEKWKEIVHNNTVTWLAFWRESVNGG-FKYVWLAPSSKIKGQADRKKFEVARGLK 545
Query: 636 DYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNV 695
+ I IR Y K F +RQ+AVA YLID LALR GNEK +D+ADTVGCC+L+V ++
Sbjct: 546 NCIGDIRKGYQKSFNDESTEKRQLAVALYLIDFLALRVGNEKGEDQADTVGCCSLRVEHI 605
Query: 696 ECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHL 755
+ N + DFLGKDS++Y+NTV++ YK + F GKK D LFD L +LN HL
Sbjct: 606 KLESNNTITLDFLGKDSMRYLNTVQIREDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHL 665
Query: 756 KELMPGLTAKVFRTYNASITLDGMLNK-GTGD-GDVAVKIDVYQRANKEVAIICNHQRTV 813
K+ M GL+AKVFRTYNASITL L+K T + + KI Y R N+EVAI+CNHQ+
Sbjct: 666 KKQMTGLSAKVFRTYNASITLQKELDKMDTKEFQSIDEKILFYNRCNREVAILCNHQKAP 725
Query: 814 SKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
K + MS++ EKI++L+ DL+ DL R K GK P + D
Sbjct: 726 PKNLAETMSKIDEKIQELR----DLQ-DLCRIKIGKTPKSQQED 764
Score = 71 (30.1 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 37/171 (21%), Positives = 64/171 (37%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
K P+ P K PV +S +S D S ++ + + S D+D KP
Sbjct: 81 KKPI--PKKKPVDSSSDSDSSDSS-SDSDSDSS----DSDSDSSSSDSSSSDSDVPKKKP 133
Query: 203 LSA---RLKGNSKNVNQGIGASKADAAISEVNVKTDP------------EDSDDEVPLSS 247
+S + G ++ + + VK+ P + S D SS
Sbjct: 134 ISKIPNKPSGTVSKTSKNSPKTTTTTTTTTTTVKSKPAPKVKPEQSSSDDSSSDSSDDSS 193
Query: 248 RFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQ 298
S++ + KP KKP A V++ + +ET + PVK+ ++
Sbjct: 194 DDSSSDSSSEEEKPKKKPSKKPAA--VKKEITVKKETTTTTKKTPVKKEVE 242
Score = 62 (26.9 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 25/108 (23%), Positives = 45/108 (41%)
Query: 140 SPVKSPVRSPVKSPVANSKESSPLDDRL---KQSPQHNALAVVKKEEIKDGNGLKSD--D 194
S + P + P K P A KE + + K++P + V K+ + +K + D
Sbjct: 202 SEEEKPKKKPSKKPAAVKKEITVKKETTTTTKKTPVKKEVEVKKETKTTTTKKVKKEESD 261
Query: 195 NDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDE 242
+D ED+K + + K + + + VN D ED +D+
Sbjct: 262 DDGEDEKTTTKKKTTTRKRKLKEEEEGEEEEE-EGVNKWWDKEDDEDD 308
Score = 58 (25.5 bits), Expect = 2.0e-119, Sum P(2) = 2.0e-119
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 250 PKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSS 290
PK A +G KPI +KKP+ S + S S SS
Sbjct: 72 PKPTAAVNGKKPIP--KKKPVDSSSDSDSSDSSSDSDSDSS 110
Score = 57 (25.1 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 32/142 (22%), Positives = 59/142 (41%)
Query: 150 VKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKG 209
+K+ + K+ +P +P+ A KK K S D+DS D S
Sbjct: 51 LKAENGSIKKLTPTPKPAPVTPKPTAAVNGKKPIPKKKPVDSSSDSDSSDSSSDSDSDSS 110
Query: 210 NSKNVNQGIGASKADAAISEVN-VKTDPEDSDDEVPLSSR-FPKSNAGTSGAKPIDSDEK 267
+S + + +S +D+ + + + P V +S+ PK+ T+ + +
Sbjct: 111 DSDSDSSSSDSSSSDSDVPKKKPISKIPNKPSGTVSKTSKNSPKTTTTTTTTTT--TVKS 168
Query: 268 KPLASKVQQNGSTSRETQQKSS 289
KP A KV+ S+S ++ SS
Sbjct: 169 KP-APKVKPEQSSSDDSSSDSS 189
Score = 42 (19.8 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 291 VPVKRPLQXXXXXXXXXXXXXXXXDTSXXXXXXXXXXXXXXXADDDDHIPISQRMKNSAP 350
+P K+P+ D+S +D PIS+ +
Sbjct: 84 IPKKKPVDSSSDSDSSDSSSDSDSDSSDSDSDSSSSDSSSSDSDVPKKKPISKIPNKPSG 143
Query: 351 SVKKS 355
+V K+
Sbjct: 144 TVSKT 148
Score = 38 (18.4 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 60 DDDEDGPAVFKRNTAASRQNLANPE 84
DD ED K+ T ++ L E
Sbjct: 262 DDGEDEKTTTKKKTTTRKRKLKEEE 286
>ASPGD|ASPL0000055668 [details] [associations]
symbol:top1 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0031298 "replication fork protection
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0006333 "chromatin assembly or disassembly"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000019 "regulation of mitotic recombination"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007097 "nuclear migration" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0007059 GO:GO:0005730 EMBL:BN001308
GO:GO:0006260 GO:GO:0006338 GO:GO:0031298 EMBL:AACD01000005
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 HOGENOM:HOG000105469
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3 RefSeq:XP_657857.1
ProteinModelPortal:Q5BGS7 SMR:Q5BGS7 STRING:Q5BGS7
EnsemblFungi:CADANIAT00002471 GeneID:2876031 KEGG:ani:AN0253.2
OMA:QGQVKYI Uniprot:Q5BGS7
Length = 871
Score = 1110 (395.8 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 236/484 (48%), Positives = 305/484 (63%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-T 450
P GDG KWTTL HNGV+FPPPY LP VKM Y G V+L PE EEVA F ML+ T
Sbjct: 232 PTKGDGTIKWTTLEHNGVVFPPPYEPLPKHVKMKYDGIPVDLHPEAEEVAGFFGSMLNST 291
Query: 451 DYMQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHXXXXXXXXX 500
+ + P F++NF+ D++++L K N V I+ CDF+PI+ ++
Sbjct: 292 QHTENPTFQKNFFADFKEILKKTGGAKDQKGNKVDIKEFSKCDFQPIFQYYDAQRQEKKA 351
Query: 501 XXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++K R+Q
Sbjct: 352 LPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVKARVQ 411
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +K
Sbjct: 412 PEQITINIGKEARVPPPP-EGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDVK 469
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K+ RQ A A YLID+ ALRAGNEK +D
Sbjct: 470 GQSDYKKFEKARELKKHIARIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGNEKGED 529
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EA+TVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F+ KK+
Sbjct: 530 EAETVGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKKEG 589
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL + MPGLTAKVFRTYNAS T+ +L G+ A K+ Y A
Sbjct: 590 DEIFDRLTTSALNKHLSQYMPGLTAKVFRTYNASHTMSELLKSMHATGNNAEKVKAYNDA 649
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLM 853
N++VAI+CNH+RTV H+ QM +++E+I+ K LK + +DLD + KKG
Sbjct: 650 NRKVAILCNHKRTVGAAHAHQMEKMSERIKGQRYQKWRLKQMMLDLDPSLKKKKGAQFFE 709
Query: 854 KDSD 857
D D
Sbjct: 710 LDED 713
Score = 73 (30.8 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 29/114 (25%), Positives = 49/114 (42%)
Query: 194 DNDSEDDKPLSARL----KGNSKNVNQGIGAS----KADAAISEVNVKTDPEDSDDEVPL 245
D + D +S R K +N GAS KA ++ ++ +PE S+++ PL
Sbjct: 31 DTNGHVDPGVSIRFGPVQKDEDVEMNDANGASASKRKARSSANQAQSYAEPESSEEDEPL 90
Query: 246 SSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRET--QQKSSSVPVKRPL 297
S R P ++D+ PLA ++ S ++ S VP++R L
Sbjct: 91 SKR---RRTSVKHEDP-ETDDDVPLALNGRKLPKASETAIGEESDSDVPIERKL 140
Score = 71 (30.1 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 31/132 (23%), Positives = 53/132 (40%)
Query: 174 NALAVVKKEEIKDGNGLKS--DDNDSEDDKPLSARLKGNSKN----VNQGIGASKADAAI 227
N + K++ N +S + SE+D+PLS R + + K+ + + + +
Sbjct: 59 NGASASKRKARSSANQAQSYAEPESSEEDEPLSKRRRTSVKHEDPETDDDVPLALNGRKL 118
Query: 228 SEVNVKTDPEDSDDEVPLSSRFP--KSNAGTSGAKPIDSDEK--KPLAS-KVQQNGSTSR 282
+ + E+SD +VP+ + K G K D + K AS K Q NG
Sbjct: 119 PKASETAIGEESDSDVPIERKLAAEKKKIQVKGEKDADPSAQATKSAASGKKQANGVKKE 178
Query: 283 ETQQKSSSVPVK 294
K + VK
Sbjct: 179 PASAKQTLKQVK 190
Score = 67 (28.6 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 184 IKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIG-----ASKADAAISE---VNVKTD 235
I+ G K +D + D SA + + NQ +S+ D +S+ +VK +
Sbjct: 42 IRFGPVQKDEDVEMNDANGASASKRKARSSANQAQSYAEPESSEEDEPLSKRRRTSVKHE 101
Query: 236 PEDSDDEVPLS---SRFPKSNAGTSGAKPIDSD---EKKPLASK--VQQNGSTSRETQQK 287
++DD+VPL+ + PK++ G + DSD E+K A K +Q G + +
Sbjct: 102 DPETDDDVPLALNGRKLPKASETAIGEES-DSDVPIERKLAAEKKKIQVKGEKDADPSAQ 160
Query: 288 SS 289
++
Sbjct: 161 AT 162
Score = 45 (20.9 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 30/122 (24%), Positives = 48/122 (39%)
Query: 156 NSKESSPLDDRLKQSPQHNALAVVKKEEIK-DGNGL-KSDDN----DSEDDKPLSARLKG 209
+S+E PL R + S +H + +G L K+ + +S+ D P+ +L
Sbjct: 83 SSEEDEPLSKRRRTSVKHEDPETDDDVPLALNGRKLPKASETAIGEESDSDVPIERKLAA 142
Query: 210 NSKNVNQGIGASKAD-------AAIS---EVN-VKTDPEDSDDEVPLSSRFPKSNAGTSG 258
K + Q G AD +A S + N VK +P + + PKS T
Sbjct: 143 EKKKI-QVKGEKDADPSAQATKSAASGKKQANGVKKEPASAKQTLKQVKAEPKSAQSTPA 201
Query: 259 AK 260
K
Sbjct: 202 KK 203
Score = 41 (19.5 bits), Expect = 1.1e-114, Sum P(2) = 1.1e-114
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 239 SDDEVPLSSRFPKSNAGTSGAK 260
SDD+ PL +S+ G S K
Sbjct: 4 SDDDTPLVKMNGRSSGGQSDVK 25
Score = 38 (18.4 bits), Expect = 2.3e-114, Sum P(2) = 2.3e-114
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 60 DDDEDGPAVFKRNTAASRQNLANPEVKRPSSS 91
+ D D P+ +AAS + AN K P+S+
Sbjct: 152 EKDAD-PSAQATKSAASGKKQANGVKKEPASA 182
>UNIPROTKB|Q5BGS7 [details] [associations]
symbol:AN0253.2 "Topoisomerase I
[Source:UniProtKB/TrEMBL;Acc:Q875K2]" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0007059 GO:GO:0005730
EMBL:BN001308 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
EMBL:AACD01000005 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3
RefSeq:XP_657857.1 ProteinModelPortal:Q5BGS7 SMR:Q5BGS7
STRING:Q5BGS7 EnsemblFungi:CADANIAT00002471 GeneID:2876031
KEGG:ani:AN0253.2 OMA:QGQVKYI Uniprot:Q5BGS7
Length = 871
Score = 1110 (395.8 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 236/484 (48%), Positives = 305/484 (63%)
Query: 394 PGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-T 450
P GDG KWTTL HNGV+FPPPY LP VKM Y G V+L PE EEVA F ML+ T
Sbjct: 232 PTKGDGTIKWTTLEHNGVVFPPPYEPLPKHVKMKYDGIPVDLHPEAEEVAGFFGSMLNST 291
Query: 451 DYMQKPKFRENFWNDWRKLLGK---------NHV-IQNLEGCDFKPIYDWHXXXXXXXXX 500
+ + P F++NF+ D++++L K N V I+ CDF+PI+ ++
Sbjct: 292 QHTENPTFQKNFFADFKEILKKTGGAKDQKGNKVDIKEFSKCDFQPIFQYYDAQRQEKKA 351
Query: 501 XXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQ 560
YM+ + DG K+KVGNFRVEPP LFRGRGEHPK G++K R+Q
Sbjct: 352 LPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKVGNFRVEPPSLFRGRGEHPKTGRVKARVQ 411
Query: 561 PSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK 620
P ITINIGK+ +P P G WKEVKHD TWLA W + IN +KYV LAA+S +K
Sbjct: 412 PEQITINIGKEARVPPPP-EGHKWKEVKHDQEGTWLAMWQENINGN-YKYVMLAANSDVK 469
Query: 621 GQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDD 680
GQSD +K+EKAR+LK +I IR Y K+ RQ A A YLID+ ALRAGNEK +D
Sbjct: 470 GQSDYKKFEKARELKKHIARIRKDYQKNLKHELMVERQKATAVYLIDQFALRAGNEKGED 529
Query: 681 EADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KKQN 739
EA+TVGCC+LK NV PPNK+ FDFLGKDSI++ + VEV+ V+K + F+ KK+
Sbjct: 530 EAETVGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKPPKKEG 589
Query: 740 DDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRA 799
D++FD+L T+ LN HL + MPGLTAKVFRTYNAS T+ +L G+ A K+ Y A
Sbjct: 590 DEIFDRLTTSALNKHLSQYMPGLTAKVFRTYNASHTMSELLKSMHATGNNAEKVKAYNDA 649
Query: 800 NKEVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLM 853
N++VAI+CNH+RTV H+ QM +++E+I+ K LK + +DLD + KKG
Sbjct: 650 NRKVAILCNHKRTVGAAHAHQMEKMSERIKGQRYQKWRLKQMMLDLDPSLKKKKGAQFFE 709
Query: 854 KDSD 857
D D
Sbjct: 710 LDED 713
Score = 73 (30.8 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 29/114 (25%), Positives = 49/114 (42%)
Query: 194 DNDSEDDKPLSARL----KGNSKNVNQGIGAS----KADAAISEVNVKTDPEDSDDEVPL 245
D + D +S R K +N GAS KA ++ ++ +PE S+++ PL
Sbjct: 31 DTNGHVDPGVSIRFGPVQKDEDVEMNDANGASASKRKARSSANQAQSYAEPESSEEDEPL 90
Query: 246 SSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRET--QQKSSSVPVKRPL 297
S R P ++D+ PLA ++ S ++ S VP++R L
Sbjct: 91 SKR---RRTSVKHEDP-ETDDDVPLALNGRKLPKASETAIGEESDSDVPIERKL 140
Score = 71 (30.1 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 31/132 (23%), Positives = 53/132 (40%)
Query: 174 NALAVVKKEEIKDGNGLKS--DDNDSEDDKPLSARLKGNSKN----VNQGIGASKADAAI 227
N + K++ N +S + SE+D+PLS R + + K+ + + + +
Sbjct: 59 NGASASKRKARSSANQAQSYAEPESSEEDEPLSKRRRTSVKHEDPETDDDVPLALNGRKL 118
Query: 228 SEVNVKTDPEDSDDEVPLSSRFP--KSNAGTSGAKPIDSDEK--KPLAS-KVQQNGSTSR 282
+ + E+SD +VP+ + K G K D + K AS K Q NG
Sbjct: 119 PKASETAIGEESDSDVPIERKLAAEKKKIQVKGEKDADPSAQATKSAASGKKQANGVKKE 178
Query: 283 ETQQKSSSVPVK 294
K + VK
Sbjct: 179 PASAKQTLKQVK 190
Score = 67 (28.6 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 184 IKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIG-----ASKADAAISE---VNVKTD 235
I+ G K +D + D SA + + NQ +S+ D +S+ +VK +
Sbjct: 42 IRFGPVQKDEDVEMNDANGASASKRKARSSANQAQSYAEPESSEEDEPLSKRRRTSVKHE 101
Query: 236 PEDSDDEVPLS---SRFPKSNAGTSGAKPIDSD---EKKPLASK--VQQNGSTSRETQQK 287
++DD+VPL+ + PK++ G + DSD E+K A K +Q G + +
Sbjct: 102 DPETDDDVPLALNGRKLPKASETAIGEES-DSDVPIERKLAAEKKKIQVKGEKDADPSAQ 160
Query: 288 SS 289
++
Sbjct: 161 AT 162
Score = 45 (20.9 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 30/122 (24%), Positives = 48/122 (39%)
Query: 156 NSKESSPLDDRLKQSPQHNALAVVKKEEIK-DGNGL-KSDDN----DSEDDKPLSARLKG 209
+S+E PL R + S +H + +G L K+ + +S+ D P+ +L
Sbjct: 83 SSEEDEPLSKRRRTSVKHEDPETDDDVPLALNGRKLPKASETAIGEESDSDVPIERKLAA 142
Query: 210 NSKNVNQGIGASKAD-------AAIS---EVN-VKTDPEDSDDEVPLSSRFPKSNAGTSG 258
K + Q G AD +A S + N VK +P + + PKS T
Sbjct: 143 EKKKI-QVKGEKDADPSAQATKSAASGKKQANGVKKEPASAKQTLKQVKAEPKSAQSTPA 201
Query: 259 AK 260
K
Sbjct: 202 KK 203
Score = 41 (19.5 bits), Expect = 1.1e-114, Sum P(2) = 1.1e-114
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 239 SDDEVPLSSRFPKSNAGTSGAK 260
SDD+ PL +S+ G S K
Sbjct: 4 SDDDTPLVKMNGRSSGGQSDVK 25
Score = 38 (18.4 bits), Expect = 2.3e-114, Sum P(2) = 2.3e-114
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 60 DDDEDGPAVFKRNTAASRQNLANPEVKRPSSS 91
+ D D P+ +AAS + AN K P+S+
Sbjct: 152 EKDAD-PSAQATKSAASGKKQANGVKKEPASA 182
>CGD|CAL0000708 [details] [associations]
symbol:TOP1 species:5476 "Candida albicans" [GO:0003917 "DNA
topoisomerase type I activity" evidence=IGI;ISS;IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0030448 "hyphal growth" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031298 "replication fork protection complex"
evidence=IEA] [GO:0006333 "chromatin assembly or disassembly"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000019 "regulation of mitotic recombination"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0007097
"nuclear migration" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 CGD:CAL0000708 GO:GO:0005634 GO:GO:0005694
GO:GO:0009405 GO:GO:0030448 GO:GO:0006265 EMBL:AACQ01000106
SUPFAM:SSF56349 GO:GO:0003918 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
RefSeq:XP_714305.1 ProteinModelPortal:Q59XR0 SMR:Q59XR0
STRING:Q59XR0 GeneID:3644034 KEGG:cal:CaO19.96 Uniprot:Q59XR0
Length = 780
Score = 1060 (378.2 bits), Expect = 7.3e-115, Sum P(3) = 7.3e-115
Identities = 223/479 (46%), Positives = 296/479 (61%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ +
Sbjct: 153 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAK 212
Query: 455 KPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXX 510
P F++NF+ND+ ++L G I+ E DF +Y
Sbjct: 213 NPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIK 272
Query: 511 XXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+GK
Sbjct: 273 EEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVPEQVTLNLGK 332
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IPE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E
Sbjct: 333 DAKIPEPPA-GHQWGEIRHDNEVTWLAMWKENISDS-LKYVRFANNSSVKGQSDFKKFET 390
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L
Sbjct: 391 ARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL 450
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTA 749
+ +V PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 451 RYEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPS 510
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNH
Sbjct: 511 LVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNH 570
Query: 810 QRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDGKRKRNL 864
QRTVSKTH + R+ +K+++ K LK + + L+ + KK P ++ D K ++
Sbjct: 571 QRTVSKTHGDSVQRINDKLKEFMWQKIRLKKMILQLEPKLKKKDPKYFEEIDDLIKEDI 629
Score = 69 (29.3 bits), Expect = 7.3e-115, Sum P(3) = 7.3e-115
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 232 VKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSV 291
V++D E+ +DEVPL R SN ++ KK S + ++ ++T+ K
Sbjct: 46 VESDYEEDEDEVPLKKR-KLSNGRAKKQVKTETKVKKEPKSANKSKSTSKKDTKVKKEKT 104
Query: 292 PVKR 295
VK+
Sbjct: 105 TVKK 108
Score = 64 (27.6 bits), Expect = 2.4e-114, Sum P(3) = 2.4e-114
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 211 SKNVNQGIGASK-ADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKP 269
S + + I S+ A + S + T +D DD++PL+ + K + + D DE P
Sbjct: 2 SSSDEEDIALSRLAKKSSSITSASTYEDDEDDDIPLAKKSRKKRVESDYEE--DEDEV-P 58
Query: 270 LASKVQQNGSTSRE--TQQKSSSVP 292
L + NG ++ T+ K P
Sbjct: 59 LKKRKLSNGRAKKQVKTETKVKKEP 83
Score = 64 (27.6 bits), Expect = 2.4e-114, Sum P(3) = 2.4e-114
Identities = 30/133 (22%), Positives = 53/133 (39%)
Query: 158 KESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQG 217
K SS + + + + + KK K ++SD + ED+ PL R N
Sbjct: 17 KSSSITSASTYEDDEDDDIPLAKKSRKKR---VESDYEEDEDEVPLKKRKLSN------- 66
Query: 218 IGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQN 277
G +K +E VK +P+ ++ S + K + K E K ++KV++
Sbjct: 67 -GRAKKQVK-TETKVKKEPKSANKSKSTSKKDTKVKKEKTTVKK----ESKATSTKVKEE 120
Query: 278 GSTSRETQQKSSS 290
T ++Q S
Sbjct: 121 SKTQSDSQASVKS 133
Score = 59 (25.8 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 51 SKPSRVY-DFDDDEDGPAVFKR---NTAASRQNLANPEVKRPSSSTANGQNSNAPKD 103
S+ RV D+++DED + KR N A +Q +VK+ S AN S + KD
Sbjct: 41 SRKKRVESDYEEDEDEVPLKKRKLSNGRAKKQVKTETKVKKEPKS-ANKSKSTSKKD 96
Score = 57 (25.1 bits), Expect = 1.3e-113, Sum P(3) = 1.3e-113
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 SDDEVPLSSRFPKSNAGTSGAKPIDSDEKK--PLASKVQQNGSTSRETQQKSSSVPVKR 295
SD+E SR K ++ + A + DE PLA K ++ S + ++ VP+K+
Sbjct: 4 SDEEDIALSRLAKKSSSITSASTYEDDEDDDIPLAKKSRKKRVES-DYEEDEDEVPLKK 61
Score = 49 (22.3 bits), Expect = 9.3e-113, Sum P(3) = 9.3e-113
Identities = 23/102 (22%), Positives = 37/102 (36%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRL----KQSPQHNALAVVKKEEIKDGNGLKSDDNDSE 198
K + V+S ++ PL R + Q VKKE K N KS
Sbjct: 39 KKSRKKRVESDYEEDEDEVPLKKRKLSNGRAKKQVKTETKVKKEP-KSANKSKSTSKKDT 97
Query: 199 DDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSD 240
K +K SK + + + S+ +VK++ + D
Sbjct: 98 KVKKEKTTVKKESKATSTKVKEESKTQSDSQASVKSETPEED 139
Score = 40 (19.1 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 334 DDDDHIPISQRMKNSAPSVKKSV 356
+D+D +P+ +R K S KK V
Sbjct: 52 EDEDEVPLKKR-KLSNGRAKKQV 73
Score = 38 (18.4 bits), Expect = 7.3e-115, Sum P(3) = 7.3e-115
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 836 KDLRVDLDRAK-KGKPPLMKDSDGKRK 861
K L D ++ K +GKP L+ +SD K K
Sbjct: 646 KKLERDNEKLKLEGKP-LLTESDIKDK 671
Score = 37 (18.1 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 334 DDDDHIPISQRMK 346
D+DD IP++++ +
Sbjct: 30 DEDDDIPLAKKSR 42
Score = 37 (18.1 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 142 VKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIK---DGNGLKSDDNDSE 198
VK +S KS + K++ ++ + A + KEE K D + E
Sbjct: 79 VKKEPKSANKSKSTSKKDTKVKKEKTTVKKESKATSTKVKEESKTQSDSQASVKSETPEE 138
Query: 199 D 199
D
Sbjct: 139 D 139
>UNIPROTKB|Q59XR0 [details] [associations]
symbol:TOP1 "Likely DNA topoisomerase I" species:237561
"Candida albicans SC5314" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IGI;ISS;IMP] [GO:0005634 "nucleus" evidence=ISS]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030448 "hyphal
growth" evidence=IMP] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 CGD:CAL0000708
GO:GO:0005634 GO:GO:0005694 GO:GO:0009405 GO:GO:0030448
GO:GO:0006265 EMBL:AACQ01000106 SUPFAM:SSF56349 GO:GO:0003918
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 RefSeq:XP_714305.1
ProteinModelPortal:Q59XR0 SMR:Q59XR0 STRING:Q59XR0 GeneID:3644034
KEGG:cal:CaO19.96 Uniprot:Q59XR0
Length = 780
Score = 1060 (378.2 bits), Expect = 7.3e-115, Sum P(3) = 7.3e-115
Identities = 223/479 (46%), Positives = 296/479 (61%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ +
Sbjct: 153 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAK 212
Query: 455 KPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXX 510
P F++NF+ND+ ++L G I+ E DF +Y
Sbjct: 213 NPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIK 272
Query: 511 XXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ P +T+N+GK
Sbjct: 273 EEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVPEQVTLNLGK 332
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IPE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E
Sbjct: 333 DAKIPEPPA-GHQWGEIRHDNEVTWLAMWKENISDS-LKYVRFANNSSVKGQSDFKKFET 390
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L
Sbjct: 391 ARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL 450
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTA 749
+ +V PPNK+ FDFLGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 451 RYEHVTLKPPNKVIFDFLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPS 510
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNH
Sbjct: 511 LVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNH 570
Query: 810 QRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDGKRKRNL 864
QRTVSKTH + R+ +K+++ K LK + + L+ + KK P ++ D K ++
Sbjct: 571 QRTVSKTHGDSVQRINDKLKEFMWQKIRLKKMILQLEPKLKKKDPKYFEEIDDLIKEDI 629
Score = 69 (29.3 bits), Expect = 7.3e-115, Sum P(3) = 7.3e-115
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 232 VKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSV 291
V++D E+ +DEVPL R SN ++ KK S + ++ ++T+ K
Sbjct: 46 VESDYEEDEDEVPLKKR-KLSNGRAKKQVKTETKVKKEPKSANKSKSTSKKDTKVKKEKT 104
Query: 292 PVKR 295
VK+
Sbjct: 105 TVKK 108
Score = 64 (27.6 bits), Expect = 2.4e-114, Sum P(3) = 2.4e-114
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 211 SKNVNQGIGASK-ADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKP 269
S + + I S+ A + S + T +D DD++PL+ + K + + D DE P
Sbjct: 2 SSSDEEDIALSRLAKKSSSITSASTYEDDEDDDIPLAKKSRKKRVESDYEE--DEDEV-P 58
Query: 270 LASKVQQNGSTSRE--TQQKSSSVP 292
L + NG ++ T+ K P
Sbjct: 59 LKKRKLSNGRAKKQVKTETKVKKEP 83
Score = 64 (27.6 bits), Expect = 2.4e-114, Sum P(3) = 2.4e-114
Identities = 30/133 (22%), Positives = 53/133 (39%)
Query: 158 KESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQG 217
K SS + + + + + KK K ++SD + ED+ PL R N
Sbjct: 17 KSSSITSASTYEDDEDDDIPLAKKSRKKR---VESDYEEDEDEVPLKKRKLSN------- 66
Query: 218 IGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQN 277
G +K +E VK +P+ ++ S + K + K E K ++KV++
Sbjct: 67 -GRAKKQVK-TETKVKKEPKSANKSKSTSKKDTKVKKEKTTVKK----ESKATSTKVKEE 120
Query: 278 GSTSRETQQKSSS 290
T ++Q S
Sbjct: 121 SKTQSDSQASVKS 133
Score = 59 (25.8 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 51 SKPSRVY-DFDDDEDGPAVFKR---NTAASRQNLANPEVKRPSSSTANGQNSNAPKD 103
S+ RV D+++DED + KR N A +Q +VK+ S AN S + KD
Sbjct: 41 SRKKRVESDYEEDEDEVPLKKRKLSNGRAKKQVKTETKVKKEPKS-ANKSKSTSKKD 96
Score = 57 (25.1 bits), Expect = 1.3e-113, Sum P(3) = 1.3e-113
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 SDDEVPLSSRFPKSNAGTSGAKPIDSDEKK--PLASKVQQNGSTSRETQQKSSSVPVKR 295
SD+E SR K ++ + A + DE PLA K ++ S + ++ VP+K+
Sbjct: 4 SDEEDIALSRLAKKSSSITSASTYEDDEDDDIPLAKKSRKKRVES-DYEEDEDEVPLKK 61
Score = 49 (22.3 bits), Expect = 9.3e-113, Sum P(3) = 9.3e-113
Identities = 23/102 (22%), Positives = 37/102 (36%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRL----KQSPQHNALAVVKKEEIKDGNGLKSDDNDSE 198
K + V+S ++ PL R + Q VKKE K N KS
Sbjct: 39 KKSRKKRVESDYEEDEDEVPLKKRKLSNGRAKKQVKTETKVKKEP-KSANKSKSTSKKDT 97
Query: 199 DDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSD 240
K +K SK + + + S+ +VK++ + D
Sbjct: 98 KVKKEKTTVKKESKATSTKVKEESKTQSDSQASVKSETPEED 139
Score = 40 (19.1 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 334 DDDDHIPISQRMKNSAPSVKKSV 356
+D+D +P+ +R K S KK V
Sbjct: 52 EDEDEVPLKKR-KLSNGRAKKQV 73
Score = 38 (18.4 bits), Expect = 7.3e-115, Sum P(3) = 7.3e-115
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 836 KDLRVDLDRAK-KGKPPLMKDSDGKRK 861
K L D ++ K +GKP L+ +SD K K
Sbjct: 646 KKLERDNEKLKLEGKP-LLTESDIKDK 671
Score = 37 (18.1 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 334 DDDDHIPISQRMK 346
D+DD IP++++ +
Sbjct: 30 DEDDDIPLAKKSR 42
Score = 37 (18.1 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 142 VKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIK---DGNGLKSDDNDSE 198
VK +S KS + K++ ++ + A + KEE K D + E
Sbjct: 79 VKKEPKSANKSKSTSKKDTKVKKEKTTVKKESKATSTKVKEESKTQSDSQASVKSETPEE 138
Query: 199 D 199
D
Sbjct: 139 D 139
>FB|FBgn0004924 [details] [associations]
symbol:Top1 "Topoisomerase 1" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IMP]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0002168
"instar larval development" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0006468 "protein
phosphorylation" evidence=IMP] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
[GO:0006338 "chromatin remodeling" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
GO:GO:0007059 GO:GO:0005730 GO:GO:0008283 GO:GO:0006260
EMBL:AE014298 GO:GO:0048477 GO:GO:0006338 GO:GO:0009790
GO:GO:0004672 GO:GO:0005719 GO:GO:0030261 GO:GO:0002168
GO:GO:0005703 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 CTD:7150 EMBL:M74557 EMBL:U80064 PIR:S35521
RefSeq:NP_001014742.1 RefSeq:NP_511161.2 UniGene:Dm.2912
ProteinModelPortal:P30189 SMR:P30189 IntAct:P30189 MINT:MINT-748832
STRING:P30189 PaxDb:P30189 PRIDE:P30189 GeneID:32458
KEGG:dme:Dmel_CG6146 FlyBase:FBgn0004924 InParanoid:P30189
OrthoDB:EOG4MCVFF ChiTaRS:TOP1 GenomeRNAi:32458 NextBio:778562
Bgee:P30189 GermOnline:CG6146 Uniprot:P30189
Length = 972
Score = 1042 (371.9 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 220/464 (47%), Positives = 287/464 (61%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K
Sbjct: 436 DGVK-WSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTK 494
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXX 513
F NF+ D+RK + + +I++ C+F+ ++++
Sbjct: 495 EVFNNNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNEN 554
Query: 514 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GKD
Sbjct: 555 EALMKEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSK 614
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
+P P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+
Sbjct: 615 VPSPP-PGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARR 672
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVG 693
L I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V
Sbjct: 673 LDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVE 732
Query: 694 NVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT 748
+V+ N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T
Sbjct: 733 HVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNT 792
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIIC 807
LN HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+C
Sbjct: 793 QVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILC 852
Query: 808 NHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRA--KKGK 849
NHQR+V K+H M L EKI+ + ++ + KKGK
Sbjct: 853 NHQRSVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGK 896
Score = 67 (28.6 bits), Expect = 2.2e-113, Sum P(3) = 2.2e-113
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 165 DRLKQSPQHNALAVVK-KEEIKD--GNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGAS 221
D + + LA+ K K+E D G+ DND +DD PL AR K + + + S
Sbjct: 321 DEMNDDEEDVPLAMRKRKQEATDRPDGGM---DNDDDDDIPLLARKKVKKEKIKK---ES 374
Query: 222 KADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLA-SKVQQ 276
K S+ VK +P D V PK +P S K+ A +KV++
Sbjct: 375 KEK---SKKRVKEEPSDDYGNVK-----PKKKKMKKEPEPAVSPGKRQKAKAKVEE 422
Score = 65 (27.9 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 26/121 (21%), Positives = 48/121 (39%)
Query: 170 SPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISE 229
S +H + + K + K D D E D ++ G+S + G+S + S
Sbjct: 72 SKEHKSSSRDKDRHKSSSSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSS 131
Query: 230 VNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSS 289
+ K +D + R ++ +S K S K +S ++ S+S ++ K S
Sbjct: 132 GHHKRSSKDKERRDKDKDR---GSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHS 188
Query: 290 S 290
S
Sbjct: 189 S 189
Score = 64 (27.6 bits), Expect = 1.0e-113, Sum P(3) = 1.0e-113
Identities = 37/138 (26%), Positives = 55/138 (39%)
Query: 155 ANSKE--SSPLD-DRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNS 211
++SKE SS D DR K S + KE N +S + S DK S+ K S
Sbjct: 70 SSSKEHKSSSRDKDRHKSSSSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKS 129
Query: 212 KNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLA 271
+ G K + E + D +D D SSR S++ + S + +
Sbjct: 130 SS-----GHHKRSSKDKE---RRD-KDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSS 180
Query: 272 SKVQQNGSTSRETQQKSS 289
S + S+SR + SS
Sbjct: 181 SSSKSKHSSSRHSSSSSS 198
Score = 58 (25.5 bits), Expect = 1.9e-112, Sum P(3) = 1.9e-112
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 238 DSDDEVPLSSRFPKSNAGT--SGAKPIDSDEKKPL-ASKVQQNGSTSRETQQKSSSVPVK 294
D +++VPL+ R K A G D D+ PL A K + +E+++KS +
Sbjct: 325 DDEEDVPLAMRKRKQEATDRPDGGMDNDDDDDIPLLARKKVKKEKIKKESKEKSKKRVKE 384
Query: 295 RP 296
P
Sbjct: 385 EP 386
Score = 52 (23.4 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 48 EASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKD 103
EA+ +P D DDD+D P + +R+ + ++K+ S + + P D
Sbjct: 340 EATDRPDGGMDNDDDDDIPLL-------ARKKVKKEKIKKESKEKSKKRVKEEPSD 388
Score = 50 (22.7 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 334 DDDDHIPISQRMKNSAPSVKK 354
DDDD IP+ R K +KK
Sbjct: 352 DDDDDIPLLARKKVKKEKIKK 372
Score = 44 (20.5 bits), Expect = 2.2e-113, Sum P(3) = 2.2e-113
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 48 EASSKPSRVYDFDDDEDGPAVFKRN-TAASRQNLANPEVKRPSSSTANGQNSNAPKD 103
++SS S+ D D + DG + R+ +++S ++ + SS+ + + S+ K+
Sbjct: 86 KSSSSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSSGHHKRSSKDKE 142
Score = 43 (20.2 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 20/98 (20%), Positives = 36/98 (36%)
Query: 191 KSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP 250
KS D D+ + +S + + +S+ + + D D E SS
Sbjct: 49 KSSSKDKHRDREREHKSSNSSSSSKEHKSSSRDKDRHKSSSSSSKHRDKDKERDGSSNSH 108
Query: 251 KSNAGTSGA-KPIDSDEKKPLASKVQQNGSTSRETQQK 287
+S + +S K S K +S + S +E + K
Sbjct: 109 RSGSSSSHKDKDGSSSSKHKSSSGHHKRSSKDKERRDK 146
Score = 41 (19.5 bits), Expect = 2.8e-111, Sum P(3) = 2.8e-111
Identities = 39/230 (16%), Positives = 74/230 (32%)
Query: 62 DEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDXXXXXXXXXXXXXXXXXX 121
D+DG + K +++ ++ + +R G +S++
Sbjct: 118 DKDGSSSSKHKSSSGHHKRSSKDKERRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSS 177
Query: 122 XXXXXXXXXXXXXXXXMRSPVKS-PVRSPV---KSPVANS-KESSPLDD-RLKQSPQHNA 175
S K P V PV+ S +D +++Q + A
Sbjct: 178 SSSSSSKSKHSSSRHSSSSSSKDHPSYDGVFVKPEPVSQQLMHSGSVDAFQMQQLGSYEA 237
Query: 176 LAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
A +GNG + N + +K ++ N AS D ++S+
Sbjct: 238 AAAGTNF---NGNGNVAGANYKNGYEESIVDIKKEEESFNNLSQASSCDYSMSQFRADEP 294
Query: 236 PEDSDDEVPLSSRFPKSNAGT--SGAKPIDSDEKK-PLASKVQQNGSTSR 282
P E + N A ++ DE+ PLA + ++ +T R
Sbjct: 295 PFVVKHEQSYAEEDSTMNYNDHDDDADEMNDDEEDVPLAMRKRKQEATDR 344
Score = 39 (18.8 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 179 VKKEEIKDGNGLKSDDNDSE---DD----KPLSARLKGNSKN-VNQGIGASKADAAISEV 230
VKKE+IK + KS E DD KP ++K + V+ G KA A + E
Sbjct: 365 VKKEKIKKESKEKSKKRVKEEPSDDYGNVKPKKKKMKKEPEPAVSPG-KRQKAKAKVEEE 423
Query: 231 NV 232
V
Sbjct: 424 EV 425
Score = 38 (18.4 bits), Expect = 9.3e-113, Sum P(3) = 9.3e-113
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 50 SSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNS 98
SSK D D D + + +++S ++ SSS+++ S
Sbjct: 137 SSKDKERRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKS 185
Score = 38 (18.4 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 252 SNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSS 290
S++ +S K D+ + + + + S+S + KSSS
Sbjct: 41 SSSSSSKHKSSSKDKHRDREREHKSSNSSSSSKEHKSSS 79
>SGD|S000005366 [details] [associations]
symbol:TOP1 "Topoisomerase I" species:4932 "Saccharomyces
cerevisiae" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA;IMP;IDA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA;IMP;IDA] [GO:0031490
"chromatin DNA binding" evidence=IBA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IPI] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0000183 "chromatin silencing at
rDNA" evidence=IMP] [GO:0000019 "regulation of mitotic
recombination" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IGI;IMP] [GO:0007097 "nuclear migration"
evidence=IGI;IMP] [GO:0006333 "chromatin assembly or disassembly"
evidence=IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0031298 "replication fork
protection complex" evidence=IDA] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 SGD:S000005366
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 EMBL:BK006948
GO:GO:0006357 GO:GO:0006333 GO:GO:0000183 GO:GO:0006368
GO:GO:0007076 GO:GO:0031490 GO:GO:0007097 GO:GO:0006271
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
GO:GO:0000019 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 GeneTree:ENSGT00390000016347
OrthoDB:EOG4BK8C3 EMBL:K03077 EMBL:Z74748 PIR:A23161
RefSeq:NP_014637.1 PDB:1OIS PDBsum:1OIS ProteinModelPortal:P04786
SMR:P04786 DIP:DIP-1705N IntAct:P04786 MINT:MINT-386768
STRING:P04786 PaxDb:P04786 PeptideAtlas:P04786 EnsemblFungi:YOL006C
GeneID:854156 KEGG:sce:YOL006C CYGD:YOL006c OMA:HIDNIRT
ChEMBL:CHEMBL5948 EvolutionaryTrace:P04786 NextBio:975920
Genevestigator:P04786 GermOnline:YOL006C Uniprot:P04786
Length = 769
Score = 1062 (378.9 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
Identities = 227/482 (47%), Positives = 301/482 (62%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ +
Sbjct: 140 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKN 199
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXX 509
P F++NF+ND+ ++L + N + I+ CDF ++D+
Sbjct: 200 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 259
Query: 510 XXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
Y + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 260 RLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLS 319
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD P+P P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 320 KDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 377
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 378 KARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 437
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 438 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 497
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CN
Sbjct: 498 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCN 557
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKD--LRVDLDRAKKGKPPLMKDSDGKRKRN 863
HQRTV+K H+ + + +I++L K K L++D D KK +P ++ D K +
Sbjct: 558 HQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKK-EPKYFEEIDDLTKED 616
Query: 864 LA 865
A
Sbjct: 617 EA 618
Score = 76 (31.8 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 185 KDGNGLKSDDNDSEDDKPLSARLKG------NSKNVNQGIGASKADAAISEVNVKTDPED 238
K + L SDD +DD PLS LK NS ++ +D AIS+++ K +
Sbjct: 8 KVNHELSSDD---DDDVPLSQTLKKRKVASMNSASLQDEAEPYDSDEAISKISKKKTKKI 64
Query: 239 SDDEVPLSS--RFPKSNAGTSGAKPI---DSDEK-KPLASKVQQNGSTSRETQQK 287
+ V SS P + TS K I D D K K + Q+N RE +++
Sbjct: 65 KTEPVQSSSLPSPPAKKSATSKPKKIKKEDGDVKVKTTKKEEQENEKKKREEEEE 119
Score = 71 (30.1 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 223 ADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSG-------AKPIDSDEKKPLASKVQ 275
ADA S+VN + +D DD+VPLS K + A+P DSDE SK+
Sbjct: 4 ADA--SKVNHELSSDD-DDDVPLSQTLKKRKVASMNSASLQDEAEPYDSDEA---ISKIS 57
Query: 276 QNGSTSRETQQ-KSSSVP 292
+ + +T+ +SSS+P
Sbjct: 58 KKKTKKIKTEPVQSSSLP 75
Score = 51 (23.0 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 333 ADDDDHIPISQRMK 346
+DDDD +P+SQ +K
Sbjct: 15 SDDDDDVPLSQTLK 28
Score = 45 (20.9 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 45 MAVEASSKPSRVYDFDDDEDGPA--VFKRNTAASRQNLANPEVKRPSSS 91
M + +SK + DDD+D P K+ AS + + + P S
Sbjct: 1 MTIADASKVNHELSSDDDDDVPLSQTLKKRKVASMNSASLQDEAEPYDS 49
>WB|WBGene00006595 [details] [associations]
symbol:top-1 species:6239 "Caenorhabditis elegans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0008406
"gonad development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0031616 "spindle pole centrosome"
evidence=IDA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0006260
GO:GO:0018996 GO:GO:0010171 GO:GO:0040011 GO:GO:0048477
GO:GO:0006338 GO:GO:0045132 GO:GO:0031616 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 GeneTree:ENSGT00390000016347 EMBL:X96762 EMBL:Z93385
PIR:S65469 PIR:T23647 PIR:T23648 RefSeq:NP_001021578.1
RefSeq:NP_493337.1 ProteinModelPortal:O17966 SMR:O17966
STRING:O17966 PaxDb:O17966 PRIDE:O17966 EnsemblMetazoa:M01E5.5a
GeneID:266847 KEGG:cel:CELE_M01E5.5 UCSC:M01E5.5b CTD:266847
WormBase:M01E5.5a WormBase:M01E5.5b InParanoid:O17966 OMA:DESEYST
NextBio:953260 Uniprot:O17966
Length = 806
Score = 1052 (375.4 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
Identities = 228/463 (49%), Positives = 283/463 (61%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F PPY LP V Y G+++ LT E EE+A +A +LD +Y K F
Sbjct: 258 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFN 317
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF DWRK++ + I +L+ CDF+ I +
Sbjct: 318 KNFMKDWRKVMTVEERERIHDLKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEV 377
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y AI+DG ++KV NFR+EPPG+FRGRG HPKMG +KKRI P D+ IN GKD IP+
Sbjct: 378 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 437
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 438 P-PGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDFEKYETARRLKKK 495
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEA-DTVGCCTLKVGNVE 696
I IR YT DF S++ RQ A A Y IDKLALRAGNEKD DEA DTVGCC+L+V +++
Sbjct: 496 IGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIK 555
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL +FDFLGKDSI+Y N V VE VYK + F GK +DDLFD
Sbjct: 556 LFDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFD 615
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 616 RLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQV 675
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
AI+CNHQR VSK M +L +KI+D K +K+ L A+
Sbjct: 676 AILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSAR 718
Score = 73 (30.8 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
Identities = 36/153 (23%), Positives = 59/153 (38%)
Query: 141 PVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSED 199
P+ S P + K+ R +S +K + NG K D +DSED
Sbjct: 34 PMASDSEVPFGELMKRDKKEKKQKKRKAESGSDEDDYKPEKRKSSAKNGKKKDVGSDSED 93
Query: 200 D-KPLSARLKGNSKNVNQGIGAS---KADAAISEVNVKTDPE-DSDDEVPLSSRFPKSNA 254
D KP + K N+K Q +++ +SE +VK P+ SDDE+ P ++
Sbjct: 94 DYKPEKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVK--PQIHSDDELEEEDEAPTTDD 151
Query: 255 GTSGAKPIDSDEKKPLASKVQQNGSTSRETQQK 287
+ KK K ++ E + +
Sbjct: 152 EEEQKRKEKERRKKEKREKKERKEKKRLEKENR 184
Score = 60 (26.2 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 27/127 (21%), Positives = 53/127 (41%)
Query: 151 KSPVANSKESSPLDDRLKQ---SPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL 207
K+ ++ESS DD + S + + +E+++ + + D++ E + R
Sbjct: 104 KNNKKKAQESSEDDDEESEGDVSEEDVKPQIHSDDELEEEDEAPTTDDEEEQKRKEKERR 163
Query: 208 KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNA-GTSGAKPIDSDE 266
K + + + + ++ + D EDSDDE ++ K + G +KP S
Sbjct: 164 KKEKREKKERKEKKRLEKENRKIK-EEDDEDSDDEDDEKAKKKKRKSKGAEKSKP--STS 220
Query: 267 KKPLASK 273
KK K
Sbjct: 221 KKDAGGK 227
Score = 56 (24.8 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 21/99 (21%), Positives = 38/99 (38%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
++P + KE + R K+ + + +IK+ + SDD D E K
Sbjct: 145 EAPTTDDEEEQKRKEKERRKKEKREKKERKEKKRLEKENRKIKEEDDEDSDDEDDEKAKK 204
Query: 203 LSARLKGNSKN---VNQGIGASKADAAISEVNVKTDPED 238
+ KG K+ ++ K + +V + D ED
Sbjct: 205 KKRKSKGAEKSKPSTSKKDAGGKKEPPKKKVKKEEDIED 243
Score = 45 (20.9 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 22/105 (20%), Positives = 40/105 (38%)
Query: 186 DGNGLKSDDNDSED-DKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
+GN D N +++ K + + V G K D + K E DE
Sbjct: 12 NGNSTVYDTNGNDEIKKEVKDEPMASDSEVPFG-ELMKRDKK-EKKQKKRKAESGSDEDD 69
Query: 245 LSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSS 289
KS+A K + SD + + +++ +++ Q+SS
Sbjct: 70 YKPEKRKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESS 114
Score = 42 (19.8 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 52 KPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTAN-GQNSNAPK 102
K +R +DDED ++ E +PS+S + G PK
Sbjct: 181 KENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSKPSTSKKDAGGKKEPPK 232
Score = 41 (19.5 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 27/149 (18%), Positives = 56/149 (37%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
KS ++ K V + E ++ K+S ++N K +E + + +S+ + SE+D
Sbjct: 76 KSSAKNGKKKDVGSDSEDDYKPEK-KKSKKNNKK---KAQESSEDDDEESEGDVSEEDVK 131
Query: 203 LSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDD-EVPLSSRFPKSNAGTSGAKP 261
+ ++ + + + E + E R K N
Sbjct: 132 PQIHSDDELEEEDEAPTTDDEEEQKRKEKERRKKEKREKKERKEKKRLEKENRKIKEEDD 191
Query: 262 IDSDEKKPLASKVQQNGSTSRETQQKSSS 290
DSD++ +K ++ S E + S+S
Sbjct: 192 EDSDDEDDEKAKKKKRKSKGAEKSKPSTS 220
>UNIPROTKB|O17966 [details] [associations]
symbol:top-1 "DNA topoisomerase 1" species:6239
"Caenorhabditis elegans" [GO:0031298 "replication fork protection
complex" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0005730 GO:GO:0008406 GO:GO:0002119
GO:GO:0006260 GO:GO:0018996 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0006338 GO:GO:0045132 GO:GO:0031616
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 HSSP:P11387 GeneTree:ENSGT00390000016347
EMBL:X96762 EMBL:Z93385 PIR:S65469 PIR:T23647 PIR:T23648
RefSeq:NP_001021578.1 RefSeq:NP_493337.1 ProteinModelPortal:O17966
SMR:O17966 STRING:O17966 PaxDb:O17966 PRIDE:O17966
EnsemblMetazoa:M01E5.5a GeneID:266847 KEGG:cel:CELE_M01E5.5
UCSC:M01E5.5b CTD:266847 WormBase:M01E5.5a WormBase:M01E5.5b
InParanoid:O17966 OMA:DESEYST NextBio:953260 Uniprot:O17966
Length = 806
Score = 1052 (375.4 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
Identities = 228/463 (49%), Positives = 283/463 (61%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F PPY LP V Y G+++ LT E EE+A +A +LD +Y K F
Sbjct: 258 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFN 317
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF DWRK++ + I +L+ CDF+ I +
Sbjct: 318 KNFMKDWRKVMTVEERERIHDLKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEV 377
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y AI+DG ++KV NFR+EPPG+FRGRG HPKMG +KKRI P D+ IN GKD IP+
Sbjct: 378 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 437
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 438 P-PGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDFEKYETARRLKKK 495
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEA-DTVGCCTLKVGNVE 696
I IR YT DF S++ RQ A A Y IDKLALRAGNEKD DEA DTVGCC+L+V +++
Sbjct: 496 IGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIK 555
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL +FDFLGKDSI+Y N V VE VYK + F GK +DDLFD
Sbjct: 556 LFDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFD 615
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 616 RLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQV 675
Query: 804 AIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
AI+CNHQR VSK M +L +KI+D K +K+ L A+
Sbjct: 676 AILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSAR 718
Score = 73 (30.8 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
Identities = 36/153 (23%), Positives = 59/153 (38%)
Query: 141 PVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSED 199
P+ S P + K+ R +S +K + NG K D +DSED
Sbjct: 34 PMASDSEVPFGELMKRDKKEKKQKKRKAESGSDEDDYKPEKRKSSAKNGKKKDVGSDSED 93
Query: 200 D-KPLSARLKGNSKNVNQGIGAS---KADAAISEVNVKTDPE-DSDDEVPLSSRFPKSNA 254
D KP + K N+K Q +++ +SE +VK P+ SDDE+ P ++
Sbjct: 94 DYKPEKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVK--PQIHSDDELEEEDEAPTTDD 151
Query: 255 GTSGAKPIDSDEKKPLASKVQQNGSTSRETQQK 287
+ KK K ++ E + +
Sbjct: 152 EEEQKRKEKERRKKEKREKKERKEKKRLEKENR 184
Score = 60 (26.2 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 27/127 (21%), Positives = 53/127 (41%)
Query: 151 KSPVANSKESSPLDDRLKQ---SPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL 207
K+ ++ESS DD + S + + +E+++ + + D++ E + R
Sbjct: 104 KNNKKKAQESSEDDDEESEGDVSEEDVKPQIHSDDELEEEDEAPTTDDEEEQKRKEKERR 163
Query: 208 KGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNA-GTSGAKPIDSDE 266
K + + + + ++ + D EDSDDE ++ K + G +KP S
Sbjct: 164 KKEKREKKERKEKKRLEKENRKIK-EEDDEDSDDEDDEKAKKKKRKSKGAEKSKP--STS 220
Query: 267 KKPLASK 273
KK K
Sbjct: 221 KKDAGGK 227
Score = 56 (24.8 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
Identities = 21/99 (21%), Positives = 38/99 (38%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
++P + KE + R K+ + + +IK+ + SDD D E K
Sbjct: 145 EAPTTDDEEEQKRKEKERRKKEKREKKERKEKKRLEKENRKIKEEDDEDSDDEDDEKAKK 204
Query: 203 LSARLKGNSKN---VNQGIGASKADAAISEVNVKTDPED 238
+ KG K+ ++ K + +V + D ED
Sbjct: 205 KKRKSKGAEKSKPSTSKKDAGGKKEPPKKKVKKEEDIED 243
Score = 45 (20.9 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 22/105 (20%), Positives = 40/105 (38%)
Query: 186 DGNGLKSDDNDSED-DKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
+GN D N +++ K + + V G K D + K E DE
Sbjct: 12 NGNSTVYDTNGNDEIKKEVKDEPMASDSEVPFG-ELMKRDKK-EKKQKKRKAESGSDEDD 69
Query: 245 LSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSS 289
KS+A K + SD + + +++ +++ Q+SS
Sbjct: 70 YKPEKRKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESS 114
Score = 42 (19.8 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 52 KPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTAN-GQNSNAPK 102
K +R +DDED ++ E +PS+S + G PK
Sbjct: 181 KENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSKPSTSKKDAGGKKEPPK 232
Score = 41 (19.5 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 27/149 (18%), Positives = 56/149 (37%)
Query: 143 KSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
KS ++ K V + E ++ K+S ++N K +E + + +S+ + SE+D
Sbjct: 76 KSSAKNGKKKDVGSDSEDDYKPEK-KKSKKNNKK---KAQESSEDDDEESEGDVSEEDVK 131
Query: 203 LSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDD-EVPLSSRFPKSNAGTSGAKP 261
+ ++ + + + E + E R K N
Sbjct: 132 PQIHSDDELEEEDEAPTTDDEEEQKRKEKERRKKEKREKKERKEKKRLEKENRKIKEEDD 191
Query: 262 IDSDEKKPLASKVQQNGSTSRETQQKSSS 290
DSD++ +K ++ S E + S+S
Sbjct: 192 EDSDDEDDEKAKKKKRKSKGAEKSKPSTS 220
>UNIPROTKB|P11387 [details] [associations]
symbol:TOP1 "DNA topoisomerase 1" species:9606 "Homo
sapiens" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0043204 "perikaryon"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006338
"chromatin remodeling" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0031298 "replication fork protection
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0012501 "programmed cell death" evidence=NAS] [GO:0016310
"phosphorylation" evidence=NAS] [GO:0042493 "response to drug"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IDA;IMP] [GO:0000228
"nuclear chromosome" evidence=IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 EMBL:CH471077
GO:GO:0019048 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0016310 GO:GO:0043204
Pathway_Interaction_DB:caspase_pathway GO:GO:0003682 GO:GO:0040016
DrugBank:DB01030 GO:GO:0006338 GO:GO:0000932 DrugBank:DB04967
GO:GO:0012501 GO:GO:0031298 DrugBank:DB00762 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AL022394 eggNOG:COG3569
HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
CTD:7150 ChiTaRS:TOP1 EMBL:J03250 EMBL:M60706 EMBL:M60688
EMBL:M60689 EMBL:M60690 EMBL:M60691 EMBL:M60692 EMBL:M60693
EMBL:M60694 EMBL:M60695 EMBL:M60696 EMBL:M60697 EMBL:M60698
EMBL:M60699 EMBL:M60700 EMBL:M60701 EMBL:M60702 EMBL:M60703
EMBL:M60704 EMBL:M60705 EMBL:AK292943 EMBL:AL035652 EMBL:X52601
EMBL:U07804 EMBL:U07806 EMBL:X16479 EMBL:M27913 IPI:IPI00413611
PIR:A30887 RefSeq:NP_003277.1 UniGene:Hs.472737 PDB:1A31 PDB:1A35
PDB:1A36 PDB:1EJ9 PDB:1K4S PDB:1K4T PDB:1LPQ PDB:1NH3 PDB:1R49
PDB:1RR8 PDB:1RRJ PDB:1SC7 PDB:1SEU PDB:1T8I PDB:1TL8 PDBsum:1A31
PDBsum:1A35 PDBsum:1A36 PDBsum:1EJ9 PDBsum:1K4S PDBsum:1K4T
PDBsum:1LPQ PDBsum:1NH3 PDBsum:1R49 PDBsum:1RR8 PDBsum:1RRJ
PDBsum:1SC7 PDBsum:1SEU PDBsum:1T8I PDBsum:1TL8 DisProt:DP00075
ProteinModelPortal:P11387 SMR:P11387 IntAct:P11387 MINT:MINT-94018
STRING:P11387 PhosphoSite:P11387 DMDM:12644118 SWISS-2DPAGE:P11387
PaxDb:P11387 PeptideAtlas:P11387 PRIDE:P11387
Ensembl:ENST00000361337 GeneID:7150 KEGG:hsa:7150 UCSC:uc002xjl.3
GeneCards:GC20P039657 H-InvDB:HIX0015818 H-InvDB:HIX0040702
HGNC:HGNC:11986 HPA:CAB009058 HPA:HPA019039 MIM:126420
neXtProt:NX_P11387 PharmGKB:PA353 InParanoid:P11387 OMA:ESVKFYY
OrthoDB:EOG4V170F PhylomeDB:P11387 BindingDB:P11387
ChEMBL:CHEMBL1781 EvolutionaryTrace:P11387 GenomeRNAi:7150
NextBio:27982 PMAP-CutDB:P11387 ArrayExpress:P11387 Bgee:P11387
CleanEx:HS_TOP1 Genevestigator:P11387 GermOnline:ENSG00000198900
Uniprot:P11387
Length = 765
Score = 1051 (375.0 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 225/470 (47%), Positives = 283/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 275
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + ++I NL CDF + +
Sbjct: 276 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 335
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 336 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 395
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 396 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 454 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 513
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 514 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 573
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 574 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 633
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK +MKD+ K+
Sbjct: 634 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK-ADAKVMKDAKTKK 682
Score = 68 (29.0 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 32/123 (26%), Positives = 49/123 (39%)
Query: 180 KKEEIKDGNGLK-SD---DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
+K + KDG+ K D D D E K R G++K I K + S +K +
Sbjct: 65 EKTKHKDGSSEKHKDKHKDRDKEKRKEEKVRASGDAK-----IKKEKENGFSSPPQIKDE 119
Query: 236 PEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEK--KPLASKVQQNGSTSRETQQKSSSVPV 293
PED VP PK + +P D D+ KP K + + ++ +
Sbjct: 120 PEDDGYFVP-----PKEDIKPL-KRPRDEDDADYKPKKIKTEDTKKEKKRKLEEEEDGKL 173
Query: 294 KRP 296
K+P
Sbjct: 174 KKP 176
Score = 62 (26.9 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 28/103 (27%), Positives = 44/103 (42%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDDK 201
VR+ + + KE SSP ++K P+ + V KE+IK LK D D D K
Sbjct: 94 VRASGDAKIKKEKENGFSSP--PQIKDEPEDDGYFVPPKEDIKP---LKRPRDEDDADYK 148
Query: 202 PLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
P + + K + + + D + K +D D +VP
Sbjct: 149 PKKIKTEDTKKEKKRKL-EEEEDGKLK----KPKNKDKDKKVP 186
>UNIPROTKB|Q75CB7 [details] [associations]
symbol:AGOS_ACL008C "ACL008Cp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
EMBL:AE016816 GenomeReviews:AE016816_GR GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 HOGENOM:HOG000105469 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3 RefSeq:NP_983396.2
STRING:Q75CB7 EnsemblFungi:AAS51220 GeneID:4619521
KEGG:ago:AGOS_ACL008C Uniprot:Q75CB7
Length = 732
Score = 1071 (382.1 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 225/471 (47%), Positives = 292/471 (61%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGV+FPP Y LP V++ Y GK V L E EEVA FA +L +D+ Q
Sbjct: 103 DDSVKWVTLRHNGVMFPPEYTPLPSHVRLYYGGKAVELPAEAEEVAGFFAALLQSDHAQN 162
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXX 509
P F++NF+ D+ +L K N + IQ CDF ++ +
Sbjct: 163 PVFQKNFFEDFLSVLNKHGGARNGIDIQEFSKCDFSKMHAYIQQQKDQKKQLSSHEKKLL 222
Query: 510 XXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
Y + +DG KE+VGNF++EPP LFRGRG HPK GKLK+R+QP D+ +N+
Sbjct: 223 KQEKDKQEEPYKFCYLDGRKEQVGNFKIEPPDLFRGRGAHPKTGKLKRRVQPEDVVLNLD 282
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD PIPE P G W E++HDNTV WL W + I+ FKYV LAA+SSLKG SD +K+E
Sbjct: 283 KDAPIPEPPA-GHKWGEIRHDNTVQWLCMWRENIS-NSFKYVRLAANSSLKGMSDFKKFE 340
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
K+R+LK+YI IRA Y K+ S+ RQIAVATYLID ALRAG EK +DEADTVGCC+
Sbjct: 341 KSRELKNYIDIIRADYRKNLKSKVMLDRQIAVATYLIDVFALRAGGEKSEDEADTVGCCS 400
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ ++ PPN + FDFLGKDSI+Y VEV+ V+K + F+ K+ LFD+LD
Sbjct: 401 LRYEHISLKPPNTVVFDFLGKDSIRYYQEVEVDKQVFKNLSIFKRPPKEPGHQLFDRLDP 460
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN HL+ MPGLTAKVFRTYNAS T+ L+ +G V K+ Y AN+ VAI+CN
Sbjct: 461 SILNKHLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNEGSVTEKMVRYNAANRAVAILCN 520
Query: 809 HQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLDRAK-KGKPPLMKD 855
HQRTV ++H+ M + TEKIE+ K K + LD ++ K P K+
Sbjct: 521 HQRTVGRSHAQSMQKATEKIEEYQWQKIRYKKAILQLDESELKANPKFFKE 571
Score = 43 (20.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 18/64 (28%), Positives = 26/64 (40%)
Query: 141 PVKSPVRSPVKSPVANSKESSP-LDDRLKQSP---QHNALAVVKKEEIKDGNGLKSDDND 196
P + R VK ++S E L +K+ + A A KEE D + K D
Sbjct: 26 PARGSKRRAVKEEESSSGEQEEVLSQEVKKRKTVSKRRAPARKVKEEEGDRDAKKESSVD 85
Query: 197 SEDD 200
E+D
Sbjct: 86 GEED 89
Score = 42 (19.8 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 230 VNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSS 289
V +K D S+DE P N G A+P +++ V++ S+S E Q++
Sbjct: 3 VKLKND-SSSEDE-------PLGNGGRKAARPARGSKRRA----VKEEESSSGE-QEEVL 49
Query: 290 SVPVKR 295
S VK+
Sbjct: 50 SQEVKK 55
>UNIPROTKB|Q7YR26 [details] [associations]
symbol:TOP1 "DNA topoisomerase 1" species:9534 "Chlorocebus
aethiops" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003917 "DNA topoisomerase
type I activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0000228 "nuclear chromosome" evidence=ISS] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0003682 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 HOVERGEN:HBG007988 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 EMBL:AB089321 ProteinModelPortal:Q7YR26 SMR:Q7YR26
PRIDE:Q7YR26 BindingDB:Q7YR26 ChEMBL:CHEMBL5265 Uniprot:Q7YR26
Length = 767
Score = 1051 (375.0 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 225/470 (47%), Positives = 283/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPDSVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + ++I NL CDF + +
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 337
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 397
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 398 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSAK-ADAKVMKDAKTKK 684
Score = 62 (26.9 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 31/123 (25%), Positives = 49/123 (39%)
Query: 180 KKEEIKDGNGLK-SD---DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
+K + KDG+ K D D D E K R G++K I K + S +K +
Sbjct: 67 EKTKHKDGSSEKHKDKHKDRDKEKRKEEKVRASGDAK-----IKKEKENGFSSPPQIKDE 121
Query: 236 PEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEK--KPLASKVQQNGSTSRETQQKSSSVPV 293
PED VP PK + +P D D+ KP K + + ++ +
Sbjct: 122 PEDDGYFVP-----PKEDIKPL-KRPRDEDDADYKPKKIKTEDIKKEKKRKLEEEEDGKL 175
Query: 294 KRP 296
++P
Sbjct: 176 RKP 178
Score = 58 (25.5 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 28/103 (27%), Positives = 44/103 (42%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDDK 201
VR+ + + KE SSP ++K P+ + V KE+IK LK D D D K
Sbjct: 96 VRASGDAKIKKEKENGFSSP--PQIKDEPEDDGYFVPPKEDIKP---LKRPRDEDDADYK 150
Query: 202 PLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
P + + K + + + D + K +D D +VP
Sbjct: 151 PKKIKTEDIKKEKKRKL-EEEEDGKLR----KPKNKDKDKKVP 188
>UNIPROTKB|F1SDV7 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 EMBL:CU062531
Ensembl:ENSSSCT00000008047 Uniprot:F1SDV7
Length = 769
Score = 1045 (372.9 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 223/470 (47%), Positives = 283/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 220 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 279
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + ++I NL CDF + +
Sbjct: 280 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 339
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 340 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 399
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 400 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 457
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 458 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 517
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 518 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 577
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 578 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 637
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK ++KD+ K+
Sbjct: 638 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK-ADAKVLKDAKTKK 686
Score = 65 (27.9 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 27/103 (26%), Positives = 44/103 (42%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDDK 201
+R+ + + KE SSP R+K P+ + KE+IK LK D D D K
Sbjct: 96 IRASGDAKIKKEKENGFSSP--PRIKDEPEDDGYFAPPKEDIKP---LKRPRDEDDADYK 150
Query: 202 PLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
P + + K + + + D + + K +D D +VP
Sbjct: 151 PKKIKTEDIKKEKKRKL-EEEEDGKLKKT--KNKDKDKDKKVP 190
Score = 58 (25.5 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 34/129 (26%), Positives = 51/129 (39%)
Query: 180 KKEEIKDGNGLK-SD---DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
+K + KDG+ K D D D E K R G++K I K + S +K +
Sbjct: 67 EKTKHKDGSSEKHKDKHKDRDKEKRKEEKIRASGDAK-----IKKEKENGFSSPPRIKDE 121
Query: 236 PEDS-------DDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQ--NGS---TSRE 283
PED +D PL + +A K D KK K+++ +G T +
Sbjct: 122 PEDDGYFAPPKEDIKPLKRPRDEDDADYKPKKIKTEDIKKEKKRKLEEEEDGKLKKTKNK 181
Query: 284 TQQKSSSVP 292
+ K VP
Sbjct: 182 DKDKDKKVP 190
Score = 45 (20.9 bits), Expect = 3.1e-108, Sum P(2) = 3.1e-108
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 144 SPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKK--EEIKDGNGLKSDDNDSEDDK 201
+P + +K P+ ++ D + K+ + K+ EE +DG K+ + D + DK
Sbjct: 129 APPKEDIK-PLKRPRDEDDADYKPKKIKTEDIKKEKKRKLEEEEDGKLKKTKNKDKDKDK 187
Score = 38 (18.4 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 154 VANS-KESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSK 212
VA+S K DR + +H +E+ K N D +K + G+S+
Sbjct: 18 VADSHKHKDKHKDREHRHKEHKKDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSE 77
>UNIPROTKB|I3LHM3 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043204 "perikaryon" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0043204 GO:GO:0003682
GO:GO:0040016 GO:GO:0000932 GO:GO:0000228 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 OMA:ESVKFYY EMBL:CU062531
Ensembl:ENSSSCT00000029351 Uniprot:I3LHM3
Length = 820
Score = 1045 (372.9 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 223/470 (47%), Positives = 283/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 286 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 345
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + ++I NL CDF + +
Sbjct: 346 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 405
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + I+D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 406 KEYGFCIMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 465
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 466 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 523
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 524 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 583
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 584 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 643
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 644 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 703
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK ++KD+ K+
Sbjct: 704 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAK-ADAKVLKDAKTKK 752
Score = 65 (27.9 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 27/103 (26%), Positives = 44/103 (42%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDDK 201
+R+ + + KE SSP R+K P+ + KE+IK LK D D D K
Sbjct: 162 IRASGDAKIKKEKENGFSSP--PRIKDEPEDDGYFAPPKEDIKP---LKRPRDEDDADYK 216
Query: 202 PLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
P + + K + + + D + + K +D D +VP
Sbjct: 217 PKKIKTEDIKKEKKRKL-EEEEDGKLKKT--KNKDKDKDKKVP 256
Score = 54 (24.1 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 28/120 (23%), Positives = 52/120 (43%)
Query: 180 KKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAIS-EV-NVKTDPE 237
KK++I+ G K +D + D P NS + ++ D + EV + ++ +
Sbjct: 64 KKKKIEKGTSHKWNDGSKKKDSPAWINRDRNSTSQLDCEERTRQDYKLHLEVTSFSSEHK 123
Query: 238 DSDDEVPLSSRFPKSNAGTSGA---KPIDSDEKKPLASKVQQNGSTS--RETQQKSSSVP 292
DS+ + + K G+S K D D++K K++ +G +E + SS P
Sbjct: 124 DSEKKHKEKEK-TKHKDGSSEKHKDKHKDRDKEKRKEEKIRASGDAKIKKEKENGFSSPP 182
Score = 45 (20.9 bits), Expect = 3.1e-108, Sum P(2) = 3.1e-108
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 144 SPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKK--EEIKDGNGLKSDDNDSEDDK 201
+P + +K P+ ++ D + K+ + K+ EE +DG K+ + D + DK
Sbjct: 195 APPKEDIK-PLKRPRDEDDADYKPKKIKTEDIKKEKKRKLEEEEDGKLKKTKNKDKDKDK 253
>UNIPROTKB|F1MN93 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043204 "perikaryon" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0043204 GO:GO:0003682
GO:GO:0040016 GO:GO:0000932 GO:GO:0000228 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 CTD:7150 OMA:ESVKFYY
EMBL:DAAA02036643 EMBL:DAAA02036644 IPI:IPI00701632
RefSeq:NP_001193416.1 UniGene:Bt.39255 PRIDE:F1MN93
Ensembl:ENSBTAT00000010466 GeneID:534799 KEGG:bta:534799
NextBio:20876536 ArrayExpress:F1MN93 Uniprot:F1MN93
Length = 769
Score = 1045 (372.9 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 222/470 (47%), Positives = 283/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 220 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 279
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + ++I NL CDF + +
Sbjct: 280 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 339
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 340 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 399
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 400 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 457
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 458 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 517
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 518 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 577
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 578 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 637
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK ++KD+ K+
Sbjct: 638 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSAK-ADAKVLKDAKTKK 686
Score = 64 (27.6 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 26/104 (25%), Positives = 43/104 (41%)
Query: 142 VKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDD 200
+K+ + +K N S P R+K P+ + KE+IK LK D D D
Sbjct: 96 IKASGDAKIKKEKENGFSSPP---RIKDEPEDDGYFAPPKEDIKP---LKRPRDEDDADY 149
Query: 201 KPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
KP + + K + + + D + + K +D D +VP
Sbjct: 150 KPKKIKTEDIKKEKKRKL-EEEEDGKLKKP--KNKDKDKDKKVP 190
Score = 59 (25.8 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 27/119 (22%), Positives = 45/119 (37%)
Query: 180 KKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDS 239
+K + KDG+ K D + DK K + + I K + S +K +PED
Sbjct: 67 EKTKHKDGSSEKHKDKHKDRDKEKRKEEKIKASG-DAKIKKEKENGFSSPPRIKDEPEDD 125
Query: 240 DDEVPLSSRFPKSNAGTSGAKPIDSDEK--KPLASKVQQNGSTSRETQQKSSSVPVKRP 296
P PK + +P D D+ KP K + + ++ +K+P
Sbjct: 126 GYFAP-----PKEDIKPL-KRPRDEDDADYKPKKIKTEDIKKEKKRKLEEEEDGKLKKP 178
>UNIPROTKB|Q7S0F7 [details] [associations]
symbol:NCU09118 "DNA topoisomerase I" species:367110
"Neurospora crassa OR74A" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
SMART:SM00435 GO:GO:0007059 GO:GO:0005730 GO:GO:0006260
GO:GO:0006338 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3 EMBL:AABX02000029
RefSeq:XP_958033.2 UniGene:Ncr.25536 ProteinModelPortal:Q7S0F7
SMR:Q7S0F7 STRING:Q7S0F7 EnsemblFungi:EFNCRT00000006491
GeneID:3874180 KEGG:ncr:NCU09118 OMA:LGKNHII Uniprot:Q7S0F7
Length = 874
Score = 1019 (363.8 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 225/482 (46%), Positives = 292/482 (60%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLD-TDYMQ 454
D KWTTL HNGVIFP Y LP VK+LY G V L E EE AT F ML+ T ++
Sbjct: 235 DDSIKWTTLEHNGVIFPEDYQRLPKDVKLLYDGTPVELDIEAEEAATFFGFMLNSTVNVE 294
Query: 455 KPKFRENFWNDWRKLL----------GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXX 504
P F++NF+ D++++L GK I+ E DF ++ +
Sbjct: 295 NPTFQKNFFRDFKEILDRTGGAKDKNGKKVDIKEFEKLDFSQLWAYKDAQTKAKNARSSA 354
Query: 505 XXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
Y++ DG KEKVGN RVE PGLFRGRG+HPK G +KKR+ P I
Sbjct: 355 EKKAEKAERDKRDAPYLYCKWDGRKEKVGNPRVEIPGLFRGRGDHPKTGCIKKRVLPEQI 414
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
TINIGK+ +PE P G WK V+HDN TWLA W + IN +KYV LAA+S++KG++D
Sbjct: 415 TINIGKEAKVPEPPA-GHKWKAVQHDNKATWLAMWQENING-HYKYVMLAANSTVKGKAD 472
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEAD 683
+K+EKAR+LK YI IRA YTKD S RQ A A YLIDK ALRAGNEKD ++EA+
Sbjct: 473 FKKFEKARELKKYIDRIRADYTKDLKSEVMADRQRATAMYLIDKFALRAGNEKDTENEAE 532
Query: 684 TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQN-DDL 742
TVGCC+LK +V PN + FDFLGKDSI++ N V+ V+K + F+ K++ DD+
Sbjct: 533 TVGCCSLKYEHVTLREPNTVIFDFLGKDSIRFYNEFTVDRQVFKNLKMFKKPPKEDGDDI 592
Query: 743 FDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANK 801
FD+L T +LN HL MPGLTAKVFRTYNAS T+ +L + + V K+ +Y N+
Sbjct: 593 FDRLTTTQLNKHLSSYMPGLTAKVFRTYNASYTMSKLLQELKVTNATVHEKVKLYNDCNR 652
Query: 802 EVAIICNHQRTVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD---RAKKGKPPLMKD 855
+VAI+CNH+RTV +H QM +L E+I+ L K K + +DLD + KKG D
Sbjct: 653 QVAILCNHKRTVGASHEQQMKKLVEQIKGLRYQKWRTKMMMLDLDPKLKKKKGAAYFELD 712
Query: 856 SD 857
D
Sbjct: 713 ED 714
Score = 88 (36.0 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 38/136 (27%), Positives = 59/136 (43%)
Query: 152 SPVANSKESSPLD-DRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGN 210
+PV S + P+D DR+ + A K D + D+ S+D+ PL A K N
Sbjct: 41 APVGVSIRNGPVDQDRMDVDSSVSGQAKRKSRTSID-QSINYKDDSSDDEAPLIAAKKAN 99
Query: 211 -----SKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTS-----GAK 260
+K +KA ++ VK E SDDE PL+ + GT+ G K
Sbjct: 100 IEKEAAKEAKSIRAGTKAKKPAAKKAVKD--ESSDDE-PLAKPTKRQVNGTAAKKTNGVK 156
Query: 261 PIDSDEKKPLASKVQQ 276
+SD P+A + ++
Sbjct: 157 KEESDSDVPIAKRAKK 172
Score = 81 (33.6 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 191 KSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFP 250
K+ ++S DD+PL+ K + VN G A K + VK E+SD +VP++ R
Sbjct: 124 KAVKDESSDDEPLA---KPTKRQVN-GTAAKKTNG------VKK--EESDSDVPIAKRAK 171
Query: 251 KSNAGTSGAKPIDSDEKKPLASKVQQNGSTS 281
K+ A AKP K A+K G +
Sbjct: 172 KAPAAKPAAKPAAKPAAKA-ATKAAPKGKVA 201
Score = 66 (28.3 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 197 SEDDKPLSARLKGN------SKNVNQGIGA--SKADAAISEVNVKTDPEDSDD-EVPLS- 246
SEDDKPL A++ G+ SK ++ + A SK A V+++ P D D +V S
Sbjct: 5 SEDDKPL-AKVNGHASAPTISKADDRAMDAADSKVHMAPVGVSIRNGPVDQDRMDVDSSV 63
Query: 247 SRFPKSNAGTSGAKPID-----SDEKKPL--ASKVQQNGSTSRETQQKSSSVPVKRP 296
S K + TS + I+ SD++ PL A K ++E + + K+P
Sbjct: 64 SGQAKRKSRTSIDQSINYKDDSSDDEAPLIAAKKANIEKEAAKEAKSIRAGTKAKKP 120
Score = 64 (27.6 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 194 DNDSED-DKPLSARLKGNSK-NVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPK 251
D D D D +S + K S+ +++Q I K D++ E + + ++ E +
Sbjct: 53 DQDRMDVDSSVSGQAKRKSRTSIDQSINY-KDDSSDDEAPLIA-AKKANIEKEAAKEAKS 110
Query: 252 SNAGTSGAKPI-------DSDEKKPLA--SKVQQNGSTSRET-----QQKSSSVPVKR 295
AGT KP +S + +PLA +K Q NG+ +++T ++ S VP+ +
Sbjct: 111 IRAGTKAKKPAAKKAVKDESSDDEPLAKPTKRQVNGTAAKKTNGVKKEESDSDVPIAK 168
Score = 53 (23.7 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 141 PV-KSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVK--KEEIKDGNGLKSDDNDS 197
P+ K ++P P A K +P+ AV K KEE KD + +D++
Sbjct: 165 PIAKRAKKAPAAKPAAKPAAKPAAKAATKAAPKGKVAAVKKSVKEESKD---ITDEDDEE 221
Query: 198 EDDK 201
E+ K
Sbjct: 222 EEYK 225
Score = 44 (20.5 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 49 ASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPK 102
A+ K + V + D D P + KR A + A P K + A APK
Sbjct: 148 AAKKTNGVKKEESDSDVP-IAKR---AKKAPAAKPAAKPAAKPAAKAATKAAPK 197
>RGD|621246 [details] [associations]
symbol:Top1 "topoisomerase (DNA) I" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0001651 "dense fibrillar component" evidence=IDA]
[GO:0003677 "DNA binding" evidence=ISO;IDA] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISO;IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654
"nucleoplasm" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260
"DNA replication" evidence=ISO;IBA] [GO:0006265 "DNA topological
change" evidence=ISO;IDA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0009266 "response to temperature stimulus" evidence=IEP]
[GO:0009303 "rRNA transcription" evidence=IMP] [GO:0031100 "organ
regeneration" evidence=IEP] [GO:0031298 "replication fork
protection complex" evidence=IBA] [GO:0031490 "chromatin DNA
binding" evidence=IDA] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IEP] [GO:0040016 "embryonic cleavage" evidence=ISO]
[GO:0042493 "response to drug" evidence=ISO] [GO:0043204
"perikaryon" evidence=ISO] [GO:0051591 "response to cAMP"
evidence=IEP] [GO:0071373 "cellular response to luteinizing hormone
stimulus" evidence=IEP] [GO:0000228 "nuclear chromosome"
evidence=ISO] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 RGD:621246 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0032403 GO:GO:0033554 GO:GO:0071373
GO:GO:0006260 GO:GO:0031100 GO:GO:0006338 GO:GO:0051591
GO:GO:0009303 GO:GO:0031490 GO:GO:0009266 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 CTD:7150 OrthoDB:EOG4V170F EMBL:AF140782
IPI:IPI00204133 RefSeq:NP_072137.1 UniGene:Rn.91572
ProteinModelPortal:Q9WUL0 SMR:Q9WUL0 IntAct:Q9WUL0 STRING:Q9WUL0
PhosphoSite:Q9WUL0 PRIDE:Q9WUL0 Ensembl:ENSRNOT00000034781
GeneID:64550 KEGG:rno:64550 UCSC:RGD:621246 BindingDB:Q9WUL0
ChEMBL:CHEMBL1075164 NextBio:613440 ArrayExpress:Q9WUL0
Genevestigator:Q9WUL0 GermOnline:ENSRNOG00000030310 Uniprot:Q9WUL0
Length = 767
Score = 1048 (374.0 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 224/470 (47%), Positives = 282/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + + I NL CDF + +
Sbjct: 278 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 397
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 398 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARKDLKSAK-ADAKVMKDAKTKK 684
Score = 58 (25.5 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 31/123 (25%), Positives = 48/123 (39%)
Query: 180 KKEEIKDGNGLK-SD---DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
+K + KDG+ K D D D E K R G++K I K + S +K +
Sbjct: 67 EKTKHKDGSSDKHKDKHKDRDKEKRKEEKIRAAGDAK-----IKKEKENGFSSPPRIKDE 121
Query: 236 PEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEK--KPLASKVQQNGSTSRETQQKSSSVPV 293
PED P PK + +P D D+ KP K + + ++ +
Sbjct: 122 PEDDGYFAP-----PKEDIKPL-KRPRDEDDADYKPKKIKTEDIKKEKKRKLEEEEDGKL 175
Query: 294 KRP 296
K+P
Sbjct: 176 KKP 178
Score = 52 (23.4 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDDK 201
+R+ + + KE SSP R+K P+ + KE+IK LK D D D K
Sbjct: 96 IRAAGDAKIKKEKENGFSSP--PRIKDEPEDDGYFAPPKEDIKP---LKRPRDEDDADYK 150
Query: 202 P 202
P
Sbjct: 151 P 151
Score = 43 (20.2 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 29/113 (25%), Positives = 45/113 (39%)
Query: 177 AVVKKEEIKDGNGLKSDDN--DSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKT 234
A +KKE K+ NG S D +D A K + K + + + DA +KT
Sbjct: 102 AKIKKE--KE-NGFSSPPRIKDEPEDDGYFAPPKEDIKPLKRP--RDEDDADYKPKKIKT 156
Query: 235 DPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQK 287
ED E + + G KP + D+ K +A + +E +QK
Sbjct: 157 --EDIKKEK--KRKLEEEEDGKL-KKPKNKDKDKKVAEPDNKKKKAKKEEEQK 204
>UNIPROTKB|Q07050 [details] [associations]
symbol:TOP1 "DNA topoisomerase 1" species:10029 "Cricetulus
griseus" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003917 "DNA topoisomerase
type I activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0000228 "nuclear chromosome" evidence=ISS] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0003682 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 HOVERGEN:HBG007988 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 EMBL:Z21624 EMBL:Z21625 PIR:A49546
RefSeq:NP_001230963.1 ProteinModelPortal:Q07050 SMR:Q07050
PRIDE:Q07050 GeneID:100689046 CTD:7150 Uniprot:Q07050
Length = 767
Score = 1044 (372.6 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 224/470 (47%), Positives = 282/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + +VI NL CDF + +
Sbjct: 278 KNFFKDWRKEMTNDEKNVITNLSKCDFTQMSQYFKDQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 397
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 398 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTV CC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVSCCSLRVEHIN 515
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAK-ADAKVMKDAKTKK 684
Score = 53 (23.7 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 27/110 (24%), Positives = 43/110 (39%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSD-DNDSEDDK 201
+R+ + + KE SSP R+K P + KE+IK LK D D D K
Sbjct: 96 IRASGDAKIKKEKENGFSSP--PRIKDEPDDDGYFAPPKEDIKP---LKRPRDEDDADYK 150
Query: 202 PLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPK 251
P + + K + + + D + + K D + E + PK
Sbjct: 151 PKKIKTEDIKKEKKRKL-EEEEDGKLKKTKNK-DKDKKGAESDNKKKKPK 198
Score = 51 (23.0 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
Identities = 28/112 (25%), Positives = 45/112 (40%)
Query: 180 KKEEIKDGNGLK-SD---DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
+K + KDG+ K D D D E K R G++K I K + S +K +
Sbjct: 67 EKTKHKDGSSEKHKDKHKDRDKEKRKEEKIRASGDAK-----IKKEKENGFSSPPRIKDE 121
Query: 236 PEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQK 287
P+D P PK + +P D D+ K++ +E ++K
Sbjct: 122 PDDDGYFAP-----PKEDIKPL-KRPRDEDDADYKPKKIKTE-DIKKEKKRK 166
>MGI|MGI:98788 [details] [associations]
symbol:Top1 "topoisomerase (DNA) I" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISO;IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006265 "DNA
topological change" evidence=ISO;IDA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031298 "replication fork
protection complex" evidence=IBA] [GO:0031490 "chromatin DNA
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0040016 "embryonic cleavage" evidence=IMP]
[GO:0043204 "perikaryon" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 MGI:MGI:98788 GO:GO:0005524
GO:GO:0005737 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0043204 GO:GO:0003682
GO:GO:0040016 GO:GO:0006338 GO:GO:0000932 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 CTD:7150 ChiTaRS:TOP1
OMA:ESVKFYY OrthoDB:EOG4V170F EMBL:D10061 EMBL:L20632 EMBL:AL590414
EMBL:AL591673 IPI:IPI00109764 PIR:JU0144 RefSeq:NP_033434.2
UniGene:Mm.217233 ProteinModelPortal:Q04750 SMR:Q04750
MINT:MINT-1868161 STRING:Q04750 PhosphoSite:Q04750 PaxDb:Q04750
PRIDE:Q04750 Ensembl:ENSMUST00000109468 GeneID:21969 KEGG:mmu:21969
UCSC:uc008nqy.1 InParanoid:Q04750 BindingDB:Q04750
ChEMBL:CHEMBL2814 NextBio:301666 PMAP-CutDB:Q04750 Bgee:Q04750
CleanEx:MM_TOP1 Genevestigator:Q04750 GermOnline:ENSMUSG00000070544
Uniprot:Q04750
Length = 767
Score = 1041 (371.5 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 223/470 (47%), Positives = 281/470 (59%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + + I NL CDF + +
Sbjct: 278 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 397
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 398 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAK-ADAKVMKDAKTKK 684
Score = 56 (24.8 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKP 202
+R+ + + KE SSP R+K P+ + KE+IK L+ D D D KP
Sbjct: 96 IRAAGDAKIKKEKENGFSSP--PRIKDEPEDDGYFAPPKEDIKPLKRLR--DEDDADYKP 151
Score = 54 (24.1 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
Identities = 25/118 (21%), Positives = 43/118 (36%)
Query: 180 KKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDS 239
+K + KDG+ K D + DK K + + I K + S +K +PED
Sbjct: 67 EKTKHKDGSSEKHKDKHKDRDKERRKEEKIRAAG-DAKIKKEKENGFSSPPRIKDEPEDD 125
Query: 240 DDEVPLSSRFPKSNAGT-SGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRP 296
P PK + + D + KP K + + ++ +K+P
Sbjct: 126 GYFAP-----PKEDIKPLKRLRDEDDADYKPKKIKTEDIKKEKKRKSEEEEDGKLKKP 178
Score = 41 (19.5 bits), Expect = 2.1e-107, Sum P(2) = 2.1e-107
Identities = 30/113 (26%), Positives = 45/113 (39%)
Query: 177 AVVKKEEIKDGNGLKSDDN--DSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKT 234
A +KKE K+ NG S D +D A K + K + + + DA +KT
Sbjct: 102 AKIKKE--KE-NGFSSPPRIKDEPEDDGYFAPPKEDIKPLKRL--RDEDDADYKPKKIKT 156
Query: 235 DPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQK 287
ED E S + G KP + D+ K +A + +E +QK
Sbjct: 157 --EDIKKEKKRKSE--EEEDGKL-KKPKNKDKDKKVAEPDNKKKKPKKEEEQK 204
>UNIPROTKB|F1PUE0 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005694 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 CTD:7150 OMA:ESVKFYY EMBL:AAEX03013937
EMBL:AAEX03013938 EMBL:AAEX03013939 RefSeq:XP_534420.3
Ensembl:ENSCAFT00000014397 GeneID:477229 KEGG:cfa:477229
Uniprot:F1PUE0
Length = 770
Score = 1037 (370.1 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 221/470 (47%), Positives = 282/470 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 221 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 280
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + ++I NL CDF + +
Sbjct: 281 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 340
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 341 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 400
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 401 PT-GHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 458
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 459 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 518
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 519 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 578
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 579 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 638
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL AK ++KD+ K+
Sbjct: 639 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSAK-ADAKVLKDAKTKK 687
Score = 59 (25.8 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 33/132 (25%), Positives = 55/132 (41%)
Query: 180 KKEEIKDGNGLK-SD---DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
+K + KDG+ K D D D E K R G++K I K + S +K +
Sbjct: 67 EKTKHKDGSSEKHKDKHKDRDKEKRKEEKVRASGDAK-----IKKEKENGFSSPPRIKDE 121
Query: 236 PEDS-------DDEVPLSSRFPKSNAGTSGAKPIDSDE-KKPLASKVQQ--NGSTSR-ET 284
PED +D PL + +A K I +++ KK K+++ +G + +
Sbjct: 122 PEDDGYFAPPKEDIKPLKRPREEDDADYKPNKKIKAEDIKKEKKRKLEEEEDGKLKKPKN 181
Query: 285 QQKSSSVPVKRP 296
++K V P
Sbjct: 182 KEKEKDKKVPEP 193
Score = 54 (24.1 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 146 VRSPVKSPVANSKE---SSPLDDRLKQSPQHNALAVVKKEEIKD-GNGLKSDDNDSEDDK 201
VR+ + + KE SSP R+K P+ + KE+IK + DD D + +K
Sbjct: 96 VRASGDAKIKKEKENGFSSP--PRIKDEPEDDGYFAPPKEDIKPLKRPREEDDADYKPNK 153
Query: 202 PLSAR-LKGNSK 212
+ A +K K
Sbjct: 154 KIKAEDIKKEKK 165
Score = 43 (20.2 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 144 SPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKK---EEIKDGNGLKSDDNDSEDD 200
+P + +K P+ +E D + + + + KK EE +DG K + + E D
Sbjct: 129 APPKEDIK-PLKRPREEDDADYKPNKKIKAEDIKKEKKRKLEEEEDGKLKKPKNKEKEKD 187
Query: 201 K 201
K
Sbjct: 188 K 188
>UNIPROTKB|F1M1S6 [details] [associations]
symbol:F1M1S6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 IPI:IPI00361978 Ensembl:ENSRNOT00000016719
Uniprot:F1M1S6
Length = 760
Score = 1025 (365.9 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 220/467 (47%), Positives = 278/467 (59%)
Query: 402 KWTTLVHNGVIFPPPYLP--HGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY P GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWKFLEHKGPVFAPPYEPLQEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 275
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + + + I NL CDF + +
Sbjct: 276 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 335
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 336 KEYGFCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSP 395
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 396 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 454 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 513
Query: 697 CIPP---NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNA 753
P + ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN
Sbjct: 514 LHPELDGHVVEFDFPGKDSIRYYNKVPVEKRVFKNLQPFMENKQPEDDLFDRLNTGILNK 573
Query: 754 HLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTV 813
HL+ LM GLTAKVFRTYNASITL L + T + I Y RAN+ VAI+CNHQR
Sbjct: 574 HLQGLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAILSYNRANRAVAILCNHQRAP 633
Query: 814 SKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
KT M + KI+ K L D R DL AK +MKD+ K+
Sbjct: 634 PKTFEKSMMNQS-KIDAKKDQLADARKDLKSAK-ADAKVMKDAKTKK 678
Score = 63 (27.2 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 32/123 (26%), Positives = 48/123 (39%)
Query: 180 KKEEIKDGNGLK-SD---DNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTD 235
+K + KDGN K D D D E K R+ G++K I K + S +K +
Sbjct: 65 EKTKHKDGNSDKHKDKHKDRDKEKRKEEKIRVAGDAK-----IKKEKENGFSSPPRIKDE 119
Query: 236 PEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEK--KPLASKVQQNGSTSRETQQKSSSVPV 293
PED P PK + +P D D+ KP K + ++ +
Sbjct: 120 PEDDGYFAP-----PKEDIKPL-KRPRDEDDADYKPKKIKTEDIKKEKERKLEEEEDGKL 173
Query: 294 KRP 296
K+P
Sbjct: 174 KKP 176
Score = 48 (22.0 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 35/153 (22%), Positives = 54/153 (35%)
Query: 140 SPVKSPVRSPVKSPVANS-KESSPLDDRLKQSPQHNALAVVKKEEIKDG--NGLKSDDN- 195
S K + K NS K DR K+ + + V +IK NG S
Sbjct: 57 SEKKHKEKEKTKHKDGNSDKHKDKHKDRDKEKRKEEKIRVAGDAKIKKEKENGFSSPPRI 116
Query: 196 -DSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNA 254
D +D A K + K + + + DA +KT+ + E L +
Sbjct: 117 KDEPEDDGYFAPPKEDIKPLKRP--RDEDDADYKPKKIKTEDIKKEKERKLE----EEED 170
Query: 255 GTSGAKPIDSDEKKPLASKVQQNGSTSRETQQK 287
G KP + D+ K +A +E +QK
Sbjct: 171 GKL-KKPKNKDKDKKVAEPDNNKKKAKKEEEQK 202
Score = 37 (18.1 bits), Expect = 2.8e-105, Sum P(2) = 2.8e-105
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 165 DRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNS 211
DR + +H +E+ K N D +K + GNS
Sbjct: 28 DREHRHKEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGNS 74
>ZFIN|ZDB-GENE-060616-217 [details] [associations]
symbol:top1l "topoisomerase (DNA) I, like"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IBA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA;IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0031298 "replication
fork protection complex" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006338 "chromatin remodeling" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IBA] [GO:0016853 "isomerase activity"
evidence=IEA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 ZFIN:ZDB-GENE-060616-217 GO:GO:0007059 GO:GO:0005730
GO:GO:0006260 GO:GO:0006338 GO:GO:0031298 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569 HOGENOM:HOG000105469
HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 OMA:ESVKFYY OrthoDB:EOG4V170F
EMBL:CR548630 EMBL:BC117588 IPI:IPI00860024 RefSeq:NP_001037789.1
UniGene:Dr.67676 SMR:Q1ED17 STRING:Q1ED17
Ensembl:ENSDART00000065949 GeneID:553496 KEGG:dre:553496 CTD:553496
InParanoid:Q1ED17 NextBio:20880241 Uniprot:Q1ED17
Length = 758
Score = 1023 (365.2 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 225/474 (47%), Positives = 282/474 (59%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G +F PPY LP VK Y GK + L+P EEVAT F+ MLD +Y K
Sbjct: 206 DGVK-WKFLEHKGPVFAPPYEPLPSNVKFYYDGKHMKLSPNAEEVATFFSKMLDHEYTTK 264
Query: 456 PKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXX 513
FR+NF+ DWRK + I +L CDF + ++
Sbjct: 265 DIFRKNFFKDWRKEMTSEEKSKITDLNKCDFSNMSEYFKAQSEARKAMTKEEKLKIKEEN 324
Query: 514 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
Y + I+D KE++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD
Sbjct: 325 ERILQEYGFCIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSK 384
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
P P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+
Sbjct: 385 HPTPP-PGTKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARR 442
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKV 692
LK + IR+ Y D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V
Sbjct: 443 LKKCVDRIRSQYRDDWKSKEMKIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRV 502
Query: 693 GNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
++ P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+
Sbjct: 503 EHLTLHPEMDGQEFVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMEDKEPEDDLFDRLN 562
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAII 806
T+ LN HL+ELM GLTAKVFRTYNASITL LN+ T D V KI Y RAN+ VAI+
Sbjct: 563 TSILNKHLQELMDGLTAKVFRTYNASITLQQQLNELTNSEDNVPAKILSYNRANRAVAIL 622
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
CNHQR KT M L KI+ K L + + +L AK + KD K+
Sbjct: 623 CNHQRAPPKTFEKSMQNLQTKIDAKKEQLVEAKRELKGAK-ADAKVRKDEKFKK 675
Score = 61 (26.5 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 27/130 (20%), Positives = 49/130 (37%)
Query: 165 DRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKAD 224
++ K S + + KK KD K D S+ K + ++ + K +
Sbjct: 45 EKSKYSNSEHRDSSEKKHRDKDKERQKLKDGSSDKQKDKHKEKRKEERSSDDRPKKEKQN 104
Query: 225 AAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRET 284
S ++K++P DSDD PK + D + KP K + + S +
Sbjct: 105 GFASP-HIKSEP-DSDDFY----HSPKLEKSLKRERDDDDGDYKPKKIKTEDDRSEKKAK 158
Query: 285 QQKSSSVPVK 294
++K +K
Sbjct: 159 KRKQEEEDIK 168
>UNIPROTKB|F1NPT1 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0043204 "perikaryon" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0006260 GO:GO:0043204
GO:GO:0003682 GO:GO:0000932 GO:GO:0000228 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 OMA:ESVKFYY EMBL:AADN02019362
IPI:IPI00596648 Ensembl:ENSGALT00000005832 ArrayExpress:F1NPT1
Uniprot:F1NPT1
Length = 747
Score = 1021 (364.5 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 219/470 (46%), Positives = 279/470 (59%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+ + EEVAT FA MLD +Y K FR
Sbjct: 198 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSTKAEEVATFFAKMLDHEYTTKEIFR 257
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + I +L CDF + +
Sbjct: 258 KNFFKDWRKEMTSEEKSTITSLSKCDFTHMSQYFKAQTEARKQMSKEEKQKIKEENERLL 317
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
Y + ++D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 318 KEYGYCVMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDSKVPPP 377
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 378 P-PGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARRLKKC 435
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +++
Sbjct: 436 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIK 495
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T+ L
Sbjct: 496 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTSIL 555
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 556 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTNPDDNIPAKILSYNRANRAVAILCNHQ 615
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R +L AK + +D K+
Sbjct: 616 RAPPKTFEKSMMNLQSKIDAKKEQLADARRELKSAK-ADAKVRRDEKSKK 664
Score = 62 (26.9 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 180 KKEEIKDGNGLKSDDN--DSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPE 237
+K + KDG+ K D D + +K ++K +S ++ I K + S +K +P+
Sbjct: 49 EKTKHKDGSSEKHKDKHKDKDKEKRKEEKIKLSSGDIK--IKKEKENGFSSPPRIKDEPD 106
Query: 238 DS-------DDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQN-GSTSRETQQKSS 289
D +D PL +A K D KK K ++ S +++ + K
Sbjct: 107 DDGFYASPKEDSKPLKRPREDDDADYKPKKIKTEDVKKAKKRKQEEEEDSKAKKAKNKDK 166
Query: 290 SVP 292
P
Sbjct: 167 KSP 169
Score = 45 (20.9 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 24/96 (25%), Positives = 37/96 (38%)
Query: 150 VKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDN-DSEDDKPLSARLK 208
+K N S P R+K P + KE+ K + DD+ D + K + +K
Sbjct: 87 IKKEKENGFSSPP---RIKDEPDDDGFYASPKEDSKPLKRPREDDDADYKPKKIKTEDVK 143
Query: 209 GNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 244
K + SKA A ++ K PE + P
Sbjct: 144 KAKKRKQEEEEDSKAKKAKNKD--KKSPEADKRKKP 177
>UNIPROTKB|Q90WS1 [details] [associations]
symbol:top1beta "Topoisomerase I beta" species:31033
"Takifugu rubripes" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 OrthoDB:EOG4V170F EMBL:AL035358 RefSeq:XP_003973717.1
ProteinModelPortal:Q90WS1 SMR:Q90WS1 GeneID:101069232
InParanoid:Q90WS1 Uniprot:Q90WS1
Length = 753
Score = 1021 (364.5 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 222/474 (46%), Positives = 282/474 (59%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G +F PPY LP VK Y GK L EEVAT FA MLD +Y K
Sbjct: 201 DGVK-WKFLEHKGPVFAPPYEPLPSNVKFYYDGKAFMLRAGAEEVATFFAKMLDHEYTTK 259
Query: 456 PKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXX 513
FR+NF+ DWRK + I +L+ CDF ++ +
Sbjct: 260 DVFRKNFFKDWRKEMTSEEKAKITDLKKCDFSEMHQYFKAQSEARKAMTKEEKLKIKEEN 319
Query: 514 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
Y + I+D KE++ NFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD
Sbjct: 320 ERLLQQYGFCIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPQDIIINCSKDSK 379
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
PE P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+
Sbjct: 380 YPEPP-PGTKWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARR 437
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKV 692
LK + IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V
Sbjct: 438 LKKCVDRIRNQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRV 497
Query: 693 GNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
+++ P ++FDFLGKDSI+Y N V VE V+K + F K+ +DDLFD+L+
Sbjct: 498 EHIKLYPEIDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKEPDDDLFDRLN 557
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAII 806
T+ LN HL+ELM GLTAKVFRTYNASITL L + T + ++ KI Y RAN+ VAI+
Sbjct: 558 TSILNKHLQELMDGLTAKVFRTYNASITLQAQLKELTSAEENIPAKILSYNRANRAVAIL 617
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
CNHQR KT M L KI+ K L + +L AK + +D K+
Sbjct: 618 CNHQRAPPKTFEKSMQNLQTKIDAKKAQLSAAKRELKSAK-ADAKVRRDEKSKK 670
Score = 60 (26.2 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 180 KKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDS 239
KK + K+ K D DK R + K+ + + + K + S +++K++P D
Sbjct: 60 KKHKDKEKMKHKDGSTDKYKDKYKEKRKEEKIKSFDYKVKSEKENGFASLLHMKSEP-DE 118
Query: 240 DDEVPLSSRFPKSNAGTSGAKPIDSD-EKKPLASKVQ-QNGSTSRETQQKSSSVPVK 294
D S PK++ + D+D E KP K + + + R+ + +V K
Sbjct: 119 D-----SYHCPKNDKTLKRERDDDNDYEFKPKKIKTENEKKAKKRKPDENIKAVKTK 170
Score = 42 (19.8 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 210 NSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKP 269
+S N +Q G S+ + K E ++ KS G S K SD+K
Sbjct: 5 HSHNEDQVDGGSRFSDSHKHHKDKFKKEHKQKDLRKEKERDKSKHGNSDHKDF-SDKKHK 63
Query: 270 LASKVQ-QNGSTSR 282
K++ ++GST +
Sbjct: 64 DKEKMKHKDGSTDK 77
>UNIPROTKB|Q24BB2 [details] [associations]
symbol:TTHERM_01299650 "Eukaryotic DNA topoisomerase I,
catalytic core family protein" species:312017 "Tetrahymena
thermophila SB210" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 SMART:SM00435
GO:GO:0007059 GO:GO:0005730 GO:GO:0006260 GO:GO:0006338
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 EMBL:GG662422 RefSeq:XP_001025304.1
UniGene:Tth.28266 ProteinModelPortal:Q24BB2 SMR:Q24BB2
EnsemblProtists:EAS05059 GeneID:7824310 KEGG:tet:TTHERM_01299650
ProtClustDB:CLSZ2499870 Uniprot:Q24BB2
Length = 713
Score = 665 (239.2 bits), Expect = 7.2e-107, Sum P(3) = 7.2e-107
Identities = 136/292 (46%), Positives = 187/292 (64%)
Query: 581 GESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHS 640
G W E+ H VTWLA + D K+ KY+FL+A S LK ++D++KYEKAR+LK+ I
Sbjct: 332 GHGWSEIVHKQDVTWLASYKDDSVKKQHKYIFLSAESKLKAENDKKKYEKARRLKNLIGQ 391
Query: 641 IRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPP 700
IR Y + S D RQ+ ATYLIDKLALR GNEK ++EADTVGCC+L+V +++ I
Sbjct: 392 IRENYERKLRSSDPVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRVEHIQVIED 451
Query: 701 NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMP 760
++ FDFLGKDS++Y NTV+V V+K + F KK DDLFD++D + LN +LK M
Sbjct: 452 TQIGFDFLGKDSMRYQNTVKVTEIVWKNMQSFIKNKKPGDDLFDRIDASSLNEYLKSQME 511
Query: 761 GLTAKVFRTYNASITLDGMLNKGTGDG----DVAVKIDVYQRANKEVAIICNHQRTVSKT 816
GLTAKVFRTYNAS TL L+K +G D+ K++ Y AN+ VAI+CNHQ+TV K
Sbjct: 512 GLTAKVFRTYNASHTLQKELDKADEEGLDKMDLKDKLNFYDEANRNVAILCNHQKTVGKN 571
Query: 817 HSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG------KPPLMKDSD-GKRK 861
+ ++ ++I K K+L L++ KK K ++++ D GK K
Sbjct: 572 FDVMVGKMEQRINVYKDYEKELHTHLNKCKKNGVNAYEKEVILEEKDDGKHK 623
Score = 357 (130.7 bits), Expect = 7.2e-107, Sum P(3) = 7.2e-107
Identities = 73/179 (40%), Positives = 97/179 (54%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KW L H+GV+FP + H V+ Y GK ++L QEE+AT ++ L TD+ KPK+REN
Sbjct: 135 KWKYLEHHGVLFPDYWQKHNVRPRYDGKPIDLNLLQEEMATYWSQTLGTDWEHKPKYREN 194
Query: 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXYM 521
F + GK+ + + DF PI Y
Sbjct: 195 FSKQFLDTFGKDKGKYDFDKFDFTPIKIHLEEQKEIRKNRSKEEKNQEKQKKERLSDYYA 254
Query: 522 WAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIP 580
AI+DG +EKVG F +EPP LF+GRGEHPKMG +K RIQP + INI KD P+P+C +P
Sbjct: 255 GAILDGFREKVGQFMIEPPTLFKGRGEHPKMGMMKGRIQPEAVVINISKDAPVPKCSVP 313
Score = 69 (29.3 bits), Expect = 7.2e-107, Sum P(3) = 7.2e-107
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 181 KEEIKDGNGLKSDDNDSEDDKP-LSARLKGNSKNVNQGIGASKA--------DAAISEVN 231
K E+KD N DD + E+ KP ++ + N V + G S A DA V
Sbjct: 63 KIEVKDEN---EDDEEEEEFKPSINGNKRKNDTPVEKAAGLSNAKQVKTSGGDAVKKPVQ 119
Query: 232 VKTDPEDSDDE 242
+ D +D DDE
Sbjct: 120 KQQDSDDEDDE 130
Score = 51 (23.0 bits), Expect = 5.6e-105, Sum P(3) = 5.6e-105
Identities = 24/109 (22%), Positives = 45/109 (41%)
Query: 191 KSDDNDSEDDKPLSARLKGNSKNVNQGIGASKA-DAAISEVNVKTDPEDSDDEV---PLS 246
+S+ + ED S + + + + G K D A +++ VK + ED ++E P
Sbjct: 24 ESEGSGEEDSAENSVKEEEDEEEEENGDNEIKEEDNADTKIEVKDENEDDEEEEEFKPSI 83
Query: 247 SRFPKSN-------AGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKS 288
+ + N AG S AK + + + VQ+ + E + S
Sbjct: 84 NGNKRKNDTPVEKAAGLSNAKQVKTSGGDAVKKPVQKQQDSDDEDDENS 132
Score = 37 (18.1 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 142 VKSPVRSPVKSPVANSKESSPLDD 165
VK+ VK PV ++S DD
Sbjct: 106 VKTSGGDAVKKPVQKQQDSDDEDD 129
>UNIPROTKB|F1NXP4 [details] [associations]
symbol:TOP1MT "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0042645 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
OMA:PEADGCQ GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 EMBL:AADN02037381 EMBL:AADN02037382
IPI:IPI00584288 Ensembl:ENSGALT00000026012 Uniprot:F1NXP4
Length = 593
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 228/483 (47%), Positives = 294/483 (60%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
+ DG K W L H G F P Y LP V+ Y GK + L+ EE+AT +A MLD +Y
Sbjct: 39 TNDGVK-WKQLEHKGPYFVPLYEPLPDDVQFYYDGKPLKLSLATEEIATFYAKMLDHEYT 97
Query: 454 QKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXX 511
K F+ NF+NDWRK + + +I+ L+ CDF+ I+ +
Sbjct: 98 TKEIFQNNFFNDWRKEMTPQEQEIIKQLDKCDFREIHKYFVDKNEARKALSKEEKQKLKE 157
Query: 512 XXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
Y + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LKKRI P D+ IN KD
Sbjct: 158 EADKIQEEYGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKKRIMPEDVIINCSKD 217
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
IPE P+ G WKEV+ DNTVTWLA W + I KY+ L SS LKG+ D +K+E A
Sbjct: 218 SKIPEPPV-GHKWKEVRFDNTVTWLASWTENIQ-NSLKYIMLNPSSKLKGEKDWQKFEVA 275
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTL 690
RKLKD +H IRA Y D+ S++ +RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L
Sbjct: 276 RKLKDVVHKIRAQYQADWKSKEMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSL 335
Query: 691 KVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDK 745
+V +++ + ++FDFLGKDSI+Y N V VE PV+K + F K DDLFD+
Sbjct: 336 RVEHIKLHSKLDGQEHVVEFDFLGKDSIRYYNKVSVEKPVFKNLQLFMKNKDPGDDLFDR 395
Query: 746 LDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVA 804
L TA LN HL++LM GLTAKVFRTYNASITL L T D VA K+ Y RAN+ VA
Sbjct: 396 LSTAVLNKHLQKLMNGLTAKVFRTYNASITLQEQLKALTNPEDSVAGKLLSYNRANRAVA 455
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK---KGKPPLMKDSDGKRK 861
I+CNHQR+ KT M L KI+ K L+ + +L+ A+ K K + ++K
Sbjct: 456 ILCNHQRSTPKTFEKSMQNLQTKIDAKKEQLEKAQQELEEAEDEFKDKKDAKAAGNVQKK 515
Query: 862 RNL 864
+ L
Sbjct: 516 KKL 518
>UNIPROTKB|Q90WS0 [details] [associations]
symbol:top1alpha "Topoisomerase I alpha" species:31033
"Takifugu rubripes" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 EMBL:AL035357 ProteinModelPortal:Q90WS0 SMR:Q90WS0
OrthoDB:EOG48GW2T Uniprot:Q90WS0
Length = 767
Score = 1019 (363.8 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 224/476 (47%), Positives = 281/476 (59%)
Query: 396 SGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 453
S DG K W L H G +F PPY LP VK Y GK + L EEVAT FA MLD +Y
Sbjct: 213 STDGSK-WRFLEHKGPVFAPPYEPLPDKVKFYYDGKLMKLAAPAEEVATFFAKMLDHEYT 271
Query: 454 QKPKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXX 511
K FR+NF+ DWRK + I +L C+F + D+
Sbjct: 272 TKDVFRKNFFKDWRKEMTSEEKSKITDLNKCNFAGMNDYFKAQSEARKQMSKEEKQKIKE 331
Query: 512 XXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKD 571
Y + I+D KE++GNFR+EPPGLFRGRG+HPKMG LK+RI+P DI IN KD
Sbjct: 332 DNERILQEYGFCIMDNHKERIGNFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKD 391
Query: 572 VPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKA 631
P+ P PG WKEV+HDN VTWLA W + I KY+ L SS +KG+ D +KYE A
Sbjct: 392 SKHPKPP-PGTKWKEVRHDNKVTWLASWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETA 449
Query: 632 RKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTL 690
R+LK + IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L
Sbjct: 450 RRLKKCVDRIRNQYREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSL 509
Query: 691 KVGNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDK 745
+V ++ P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+
Sbjct: 510 RVEHINLYPKLDDQEYVVEFDFLGKDSIRYYNRIPVEKRVFKNLQLFLENKQPGDDLFDR 569
Query: 746 LDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNK-GTGDGDVAVKIDVYQRANKEVA 804
L+T+ LN HL+ELM GLTAKVFRTYNASITL L + D V KI Y RAN+ VA
Sbjct: 570 LNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLKELSCSDDSVPAKILSYNRANRAVA 629
Query: 805 IICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
I+CNHQR KT M L KI++ + L R L +A K + D K+
Sbjct: 630 ILCNHQRAPPKTFEKSMQNLQTKIDEKQKQLSAARKQL-KAAKAEHKASHDDKSKK 684
Score = 54 (24.1 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 25/88 (28%), Positives = 36/88 (40%)
Query: 152 SPVANSKESSPLDDRLKQSPQHNALA--------------VVKKEEIKDGNGLKSD-DND 196
SP A E D+ L SPQHN + VK E K K + + +
Sbjct: 116 SPAAIKNEPEE-DNGLYSSPQHNKTSRRECDDEEFDCKPKKVKTEHDKKSKKRKHEYEEE 174
Query: 197 SEDDKPLSARLKGNSKNVNQGIGASKAD 224
E+++ + + K KNV +G SK D
Sbjct: 175 DEEEEDIKPKKKKKDKNVTEG-KKSKKD 201
>UNIPROTKB|I3LTP0 [details] [associations]
symbol:LOC100628093 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 EMBL:CU655901
Ensembl:ENSSSCT00000029650 OMA:VVINCSX Uniprot:I3LTP0
Length = 605
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 219/458 (47%), Positives = 281/458 (61%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
+WT L H G F PPY LP GV+ Y GK + L+ EEVAT + ML+ +Y K FR
Sbjct: 56 RWTQLEHRGPCFAPPYEPLPDGVRFYYDGKPMKLSLAAEEVATFYGKMLEHEYTTKEVFR 115
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
NF+ DWRK + + VI+ L CDF I+
Sbjct: 116 HNFFRDWRKEMTAAERKVIKRLSKCDFTEIHRHFADRAAARRALPREEKQRLKEEAEKLQ 175
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+TIN G+D +PE
Sbjct: 176 QEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVLPEDVTINCGRDSKVPEP 235
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ D TVTWLA W + + KYV L SS LKG+ D EKYE AR+LK
Sbjct: 236 PA-GHQWKEVRSDRTVTWLAAWTENVQ-NATKYVMLNPSSKLKGERDWEKYEVARRLKGV 293
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V +V+
Sbjct: 294 VDEIRSRYRADWKSREMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQ 353
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P P ++FDFLGKDSI+Y N V VE PVY+ + F K ++LFD+L TA L
Sbjct: 354 LHPEADGCPYVVEFDFLGKDSIRYYNKVPVEKPVYRNLQLFLENKDPGEELFDRLTTASL 413
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL G L T + +A K+ Y RAN+ VA++CNHQ
Sbjct: 414 NKHLQDLMDGLTAKVFRTYNASITLQGQLRALTRAEDSIAAKLLSYNRANRAVAVLCNHQ 473
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKG 848
R KT M L KIE K + + + +L++A+ G
Sbjct: 474 RAPPKTFEKSMQALRSKIEAKKQQVAEAKAELEKARAG 511
>UNIPROTKB|Q969P6 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005524 GO:GO:0005694 GO:GO:0006260
DrugBank:DB01030 GO:GO:0042645 DrugBank:DB00762 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AF349031 EMBL:AF349018
EMBL:AF349019 EMBL:AF349020 EMBL:AF349021 EMBL:AF349022
EMBL:AF349023 EMBL:AF349024 EMBL:AF349025 EMBL:AF349026
EMBL:AF349027 EMBL:AF349028 EMBL:AF349029 EMBL:AF349030
EMBL:AF349017 EMBL:AK316380 EMBL:AC087793 EMBL:BC044646
EMBL:BC052285 EMBL:BC071914 IPI:IPI00465141 IPI:IPI00984931
RefSeq:NP_001245375.1 RefSeq:NP_001245376.1 RefSeq:NP_443195.1
UniGene:Hs.528574 ProteinModelPortal:Q969P6 SMR:Q969P6
STRING:Q969P6 PhosphoSite:Q969P6 DMDM:20140694 PaxDb:Q969P6
PRIDE:Q969P6 Ensembl:ENST00000329245 Ensembl:ENST00000519148
GeneID:116447 KEGG:hsa:116447 UCSC:uc003yxz.3 CTD:116447
GeneCards:GC08M144391 HGNC:HGNC:29787 HPA:HPA001915 HPA:HPA021542
MIM:606387 neXtProt:NX_Q969P6 PharmGKB:PA134922772 eggNOG:COG3569
HOGENOM:HOG000105469 HOVERGEN:HBG007988 InParanoid:Q969P6 KO:K03163
OMA:PEADGCQ OrthoDB:EOG49S667 PhylomeDB:Q969P6 GenomeRNAi:116447
NextBio:79927 ArrayExpress:Q969P6 Bgee:Q969P6 CleanEx:HS_TOP1MT
Genevestigator:Q969P6 GermOnline:ENSG00000184428 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 Uniprot:Q969P6
Length = 601
Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
Identities = 220/460 (47%), Positives = 282/460 (61%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K
Sbjct: 49 DGVK-WRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTK 107
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXX 513
FR+NF+NDWRK + + VI++L+ CDF I+ +
Sbjct: 108 EVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEA 167
Query: 514 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D
Sbjct: 168 EKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSK 227
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+
Sbjct: 228 IPEPPA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARR 285
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEA-DTVGCCTLKV 692
L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D EA DTVGCC+L+V
Sbjct: 286 LRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRV 345
Query: 693 GNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
+V+ P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L
Sbjct: 346 EHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLT 405
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAII 806
T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+
Sbjct: 406 TTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAIL 465
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
CNHQR T M L KI+ K + + R +L RA+
Sbjct: 466 CNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRAR 505
>ZFIN|ZDB-GENE-040624-2 [details] [associations]
symbol:top1mt "mitochondrial topoisomerase I"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 ZFIN:ZDB-GENE-040624-2 GO:GO:0005694 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 CTD:116447 HOVERGEN:HBG007988
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741 HSSP:P11387
eggNOG:NOG317235 EMBL:BC096851 EMBL:AY429655 IPI:IPI00513305
RefSeq:NP_001001838.1 UniGene:Dr.79693 SMR:Q6T721 GeneID:415098
KEGG:dre:415098 NextBio:20818783 Uniprot:Q6T721
Length = 600
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 223/468 (47%), Positives = 282/468 (60%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW++L H G F P Y LP + Y G++V L+P EE+AT +A MLD +Y K F+
Sbjct: 52 KWSSLEHKGPYFAPDYEPLPANICFYYDGQQVKLSPLTEEIATFYAKMLDHEYTTKEVFQ 111
Query: 460 ENFWNDWRKLLGKNH--VIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
+NF+ DWRK + K +I L CDF I+ +
Sbjct: 112 KNFFKDWRKEMTKEERKLITTLSKCDFTHIHKYFVEKAEEKKNMTKEEKQVLKDEAARLM 171
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ + ++DG +EK+GNF++EPPGLFRGRGEHPKMG+LKKRIQP D+ IN KD IPE
Sbjct: 172 EEFGYCLLDGHREKIGNFKLEPPGLFRGRGEHPKMGRLKKRIQPEDVAINCSKDSKIPEP 231
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WK V+HDNTVTWLA W + I PK KY+ L SS LKG+ D +KYE AR+LK+
Sbjct: 232 PA-GHKWKRVQHDNTVTWLASWLENI-PKRPKYIMLNPSSKLKGEKDWQKYETARRLKEC 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
+ SIR Y +D+ SR+ RQ VA Y IDKLALRAGNEKDD+ ADTVGCC+L+V ++
Sbjct: 290 VKSIRKRYMQDWKSREMKSRQRGVAIYFIDKLALRAGNEKDDESADTVGCCSLRVEHIRL 349
Query: 698 IP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
+ ++FDFLGKDSI+Y N V VE V+K + F K DDLFD++ T LN
Sbjct: 350 HKHLDGLDHVVEFDFLGKDSIRYYNKVPVEKQVFKNLKLFIKHKDPEDDLFDRISTVNLN 409
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQR 811
L E M GLTAKVFRT+NAS TL LNK T D V KI Y RAN+ VAI+CNHQR
Sbjct: 410 KALTESMSGLTAKVFRTFNASTTLQDQLNKLTSDDCTVEEKILSYNRANRAVAILCNHQR 469
Query: 812 TVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGK 859
KT M L EKI+ K +++ R +L AK+ D K
Sbjct: 470 AAPKTFEKSMQLLQEKIQKKKEQIEEARKELKEAKQVDKDTPSDKSSK 517
>UNIPROTKB|A9Q1D5 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9598 "Pan troglodytes" [GO:0003917 "DNA topoisomerase type
I activity" evidence=IBA] [GO:0006260 "DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0042645 "mitochondrial nucleoid" evidence=IBA] [GO:0005730
"nucleolus" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005524
GO:GO:0005694 GO:GO:0006260 GO:GO:0042645 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 CTD:116447 eggNOG:COG3569
HOGENOM:HOG000105469 KO:K03163 OrthoDB:EOG49S667 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 EMBL:EF421830 RefSeq:NP_001106268.1
UniGene:Ptr.6282 ProteinModelPortal:A9Q1D5 SMR:A9Q1D5 GeneID:472883
KEGG:ptr:472883 InParanoid:A9Q1D5 NextBio:20849513 Uniprot:A9Q1D5
Length = 601
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 219/460 (47%), Positives = 281/460 (61%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G F PPY LP GV+ Y+GK V L+ EEVAT + ML +Y K
Sbjct: 49 DGVK-WRQLEHKGPYFAPPYEPLPDGVRFFYEGKPVRLSVAAEEVATFYGRMLGHEYTTK 107
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXX 513
FR+NF+NDWRK + + VI++L+ CDF I+ +
Sbjct: 108 EVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEA 167
Query: 514 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
+ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D
Sbjct: 168 EKLQREFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRIMPEDVVINCSRDSK 227
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+
Sbjct: 228 IPEPPA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARR 285
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEA-DTVGCCTLKV 692
L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D EA DTVGCC+L+V
Sbjct: 286 LRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRV 345
Query: 693 GNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
+V+ P + ++FDFLGKD I+Y N V VE PVYK + F K D+LFD+L
Sbjct: 346 EHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRDNLFDRLT 405
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAII 806
T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+
Sbjct: 406 TTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAIL 465
Query: 807 CNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
CNHQR T M L KI+ K + + R +L RA+
Sbjct: 466 CNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRAR 505
>MGI|MGI:1920210 [details] [associations]
symbol:Top1mt "DNA topoisomerase 1, mitochondrial"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003916
"DNA topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=ISO;IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 MGI:MGI:1920210
GO:GO:0005524 GO:GO:0005694 GO:GO:0006260 EMBL:CH466545
GO:GO:0042645 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
CTD:116447 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
OMA:PEADGCQ OrthoDB:EOG49S667 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
EMBL:AF362952 EMBL:AK147119 EMBL:BC138582 EMBL:BC138583
IPI:IPI00454114 RefSeq:NP_082680.1 UniGene:Mm.182401 HSSP:P11387
ProteinModelPortal:Q8R4U6 SMR:Q8R4U6 PhosphoSite:Q8R4U6
PaxDb:Q8R4U6 PRIDE:Q8R4U6 Ensembl:ENSMUST00000000958 GeneID:72960
KEGG:mmu:72960 UCSC:uc007whb.1 GeneTree:ENSGT00390000016347
InParanoid:Q8R4U6 NextBio:337229 Bgee:Q8R4U6 Genevestigator:Q8R4U6
Uniprot:Q8R4U6
Length = 593
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 209/456 (45%), Positives = 272/456 (59%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP GV LY GK + L+ EEVAT + ML + K FR
Sbjct: 45 KWRQLEHKGPYFTPAYEPLPDGVHFLYDGKPLKLSLAAEEVATFYGKMLHLECTSKEVFR 104
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXX 517
NF++DWRK + + +I +L+ CDF I+
Sbjct: 105 RNFFSDWRKEMTPEERRLITHLDKCDFTEIHKHFLERAEARRTLPREQKQKLKEEAEKLQ 164
Query: 518 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ + ++DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IPE
Sbjct: 165 QEFGYCVLDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPEP 224
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I FKYV L SS KG+ D +KYE AR+LK
Sbjct: 225 PA-GHQWKEVRSDNTVMWLAAWVEHIQ-NSFKYVILNPSSKPKGEMDWQKYEVARRLKGV 282
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y D+ S + +RQ+AVA Y IDKLALR GNEK++ E ADTVGCC+L+V ++
Sbjct: 283 VDKIRAQYQADWKSPEMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIR 342
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++ DFLGKDSI+Y N V VE V++ + F K DDLFD L T+ L
Sbjct: 343 LHAPAGGQEHVVELDFLGKDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSL 402
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNAS+TL L T + V K+ Y RAN+ VA++CNHQ
Sbjct: 403 NKHLQDLMEGLTAKVFRTYNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQ 462
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
R V KT M L +KIE K + + +V+L +A+
Sbjct: 463 RAVPKTFEKSMQTLQKKIETKKAQVAEAQVELQKAE 498
>RGD|1303177 [details] [associations]
symbol:Top1mt "topoisomerase (DNA) I, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003917 "DNA topoisomerase
type I activity" evidence=IBA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0006260 "DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=IBA] [GO:0006338 "chromatin remodeling" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0031298
"replication fork protection complex" evidence=IBA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO;IBA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 RGD:1303177 GO:GO:0005524 GO:GO:0005694 GO:GO:0006260
GO:GO:0042645 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
CTD:116447 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
OMA:PEADGCQ OrthoDB:EOG49S667 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 GeneTree:ENSGT00390000016347 EMBL:BK001786
IPI:IPI00366432 RefSeq:NP_001002798.1 UniGene:Rn.31307
ProteinModelPortal:Q6IM78 SMR:Q6IM78 PRIDE:Q6IM78
Ensembl:ENSRNOT00000009965 GeneID:300029 KEGG:rno:300029
UCSC:RGD:1303177 InParanoid:Q6IM78 NextBio:646149
Genevestigator:Q6IM78 Uniprot:Q6IM78
Length = 593
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 214/477 (44%), Positives = 281/477 (58%)
Query: 385 QYSKSTKML-PGSGDGQK---KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQE 438
Q S+ +K G G+ K KW L H G F P Y LP GV+ Y GK V L+ E
Sbjct: 24 QVSRGSKASRAGWGETSKSSVKWKQLEHKGPCFAPAYEPLPDGVRFFYDGKPVRLSLAAE 83
Query: 439 EVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXX 496
EVAT + ML + K FR NF++DW+K + + +I +L+ CDF I+
Sbjct: 84 EVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFSEIHRHFMERAE 143
Query: 497 XXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK 556
+ + I+DG +EK+GNF+ EPPGLFRGRG+HPKMG LK
Sbjct: 144 ARRTLPREQKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLK 203
Query: 557 KRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAAS 616
+R+ P D+ IN +D IPE P G WKEV+ DNTV WLA W + I FKY+ L S
Sbjct: 204 RRVMPEDVVINCSRDSKIPEPPA-GHQWKEVRSDNTVMWLAAWVENIQ-NSFKYIILNPS 261
Query: 617 SSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNE 676
S KG+ D +KYE AR+LK + IRA Y D+ S + +RQ+AVA Y IDKLALR GNE
Sbjct: 262 SKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFIDKLALRTGNE 321
Query: 677 KDDDE-ADTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIG 730
K++ E ADTVGCC+L+V +V P + ++ DFLGKDSI+Y N V VE V++ +
Sbjct: 322 KEEGETADTVGCCSLRVEHVRLHTPADGQEHVVELDFLGKDSIRYKNHVTVEKLVFQNLQ 381
Query: 731 QFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDV 789
F K DDLFD L T+ LN HL++LM GLTAKVFRTYNASITL L T + +
Sbjct: 382 HFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASITLQEQLRVLTRAEDSL 441
Query: 790 AVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
K+ Y RAN+ VA++CNHQR + KT M L +KIE K + + +V+L +A+
Sbjct: 442 TCKVLAYNRANRAVAVLCNHQRAIPKTFEESMQTLQKKIETKKAQVAEAQVELQKAE 498
>UNIPROTKB|F1SEV4 [details] [associations]
symbol:F1SEV4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 EMBL:FP085504
Ensembl:ENSSSCT00000007623 Uniprot:F1SEV4
Length = 522
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 205/430 (47%), Positives = 265/430 (61%)
Query: 428 GKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFK 485
GK + L+ EEVAT + ML+ +Y K FR NF+ DWRK + + VI+ L CDF
Sbjct: 1 GKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAAERKVIKRLSKCDFT 60
Query: 486 PIYDWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRG 545
I+ + + I+DG +EK+GNF+ EPPGLFRG
Sbjct: 61 EIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 120
Query: 546 RGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINP 605
RG+HPKMG LK+R+ P D+TIN G+D +PE P G WKEV+ D TVTWLA W + +
Sbjct: 121 RGDHPKMGMLKRRVLPEDVTINCGRDSKVPEPPA-GHQWKEVRSDRTVTWLAAWTENVQ- 178
Query: 606 KEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYL 665
KYV L SS LKG+ D EKYE AR+LK + IR+ Y D+ SR+ RQ AVA Y
Sbjct: 179 NATKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSREMKARQRAVALYF 238
Query: 666 IDKLALRAGNEKDDDE-ADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTV 719
IDKLALRAGNEK++ E ADTVGCC+L+V +V+ P P ++FDFLGKDSI+Y N V
Sbjct: 239 IDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEFDFLGKDSIRYYNKV 298
Query: 720 EVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM 779
VE PVY+ + F K ++LFD+L TA LN HL++LM GLTAKVFRTYNASITL G
Sbjct: 299 PVEKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAKVFRTYNASITLQGQ 358
Query: 780 LNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDL 838
L T + +A K+ Y RAN+ VA++CNHQR KT M L KIE K + +
Sbjct: 359 LRALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQALRSKIEAKKQQVAEA 418
Query: 839 RVDLDRAKKG 848
+ +L++A+ G
Sbjct: 419 KAELEKARAG 428
>ZFIN|ZDB-GENE-030131-5390 [details] [associations]
symbol:top1 "topoisomerase (DNA) I" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 SMART:SM00435 ZFIN:ZDB-GENE-030131-5390
GO:GO:0005694 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 EMBL:CU633907 EMBL:CU929044
IPI:IPI00899011 Ensembl:ENSDART00000133524 Uniprot:F1QTQ7
Length = 555
Score = 924 (330.3 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 192/397 (48%), Positives = 249/397 (62%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G +FPPPY LP +K Y G + L+P EEVAT +A ML+ +Y
Sbjct: 120 DGSK-WRFLEHKGPVFPPPYEPLPGHIKFYYDGNAMKLSPAAEEVATFYAKMLEHEYTTN 178
Query: 456 PKFRENFWNDWRKLLGKNHV--IQNLEGCDFKPIYDWHXXXXXXXXXXXXXXXXXXXXXX 513
FR+NF+ DWRK + I L+ CDF ++++
Sbjct: 179 EIFRKNFFKDWRKEMTSEEKSKITELKKCDFTQMHEYFKAQSEARKQMSKEEKQKNKEEN 238
Query: 514 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVP 573
Y + ++D +E++GNFR+EPPGLFRGRG+HPKMGKLK+RI+P DI IN KD
Sbjct: 239 ERILQEYGFCLMDNHRERIGNFRIEPPGLFRGRGDHPKMGKLKRRIRPEDIIINCSKDSV 298
Query: 574 IPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARK 633
P+ P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+
Sbjct: 299 QPKAP-PGTRWKEVRHDNKVTWLVSWTENIQGS-IKYIMLNPSSRIKGEKDWQKYETARR 356
Query: 634 LKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKV 692
LK + IRA Y +D+ S++ RQ AVA Y IDKLALRAGNEKD+ E ADTVGCC+L+V
Sbjct: 357 LKKCVERIRAQYREDWRSKEMRIRQRAVALYFIDKLALRAGNEKDEGETADTVGCCSLRV 416
Query: 693 GNVECIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLD 747
+++ P ++FDFLGKDSI+Y N + VE V+K + F K+ DDLFD+L+
Sbjct: 417 EHIKLHPQLDGQDYVVEFDFLGKDSIRYYNKIPVEKRVFKNLQLFLENKQSEDDLFDRLN 476
Query: 748 TAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT 784
T+ LN +L+ELM GLTAKVFRTYNASITL LN+ T
Sbjct: 477 TSILNKYLQELMDGLTAKVFRTYNASITLQQQLNELT 513
Score = 44 (20.5 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 158 KESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDK 201
+E S ++R+++ P+ KEE KD G K + ++K
Sbjct: 71 EEDSDFEERVEKKPKKKI-----KEEKKDTTGGKKKAKNQPEEK 109
Score = 42 (19.8 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 222 KADAAISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTS 281
K + +S ++K + ED+D+ + P + D E KP KV+
Sbjct: 12 KENGFVSPSSIKVE-EDTDNHHTVKHEKPLKRE-----RDEDEYEHKPKKVKVENEKKVK 65
Query: 282 RETQQKSSS 290
+ Q++ S
Sbjct: 66 KRKQEEEDS 74
Score = 39 (18.8 bits), Expect = 7.8e-95, Sum P(2) = 7.8e-95
Identities = 17/81 (20%), Positives = 30/81 (37%)
Query: 158 KESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARLKGNSKNVNQG 217
K PL + + VK E K K ++ DS+ ++ + + K K + +
Sbjct: 35 KHEKPLKRERDEDEYEHKPKKVKVENEKKVKKRKQEEEDSDFEERVEKKPK---KKIKE- 90
Query: 218 IGASKADAAISEVNVKTDPED 238
K D + K PE+
Sbjct: 91 ---EKKDTTGGKKKAKNQPEE 108
>UNIPROTKB|Q7RE42 [details] [associations]
symbol:PY05226 "Eukaryotic DNA topoisomerase I, DNA
binding, putative" species:73239 "Plasmodium yoelii yoelii"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IBA]
[GO:0005730 "nucleolus" evidence=IBA] [GO:0006260 "DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0006338 "chromatin remodeling" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0031298 "replication
fork protection complex" evidence=IBA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0007059 GO:GO:0005730 GO:GO:0006260
GO:GO:0006338 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
HSSP:P11387 EMBL:AABL01001646 RefSeq:XP_725660.1
ProteinModelPortal:Q7RE42 SMR:Q7RE42 STRING:Q7RE42 GeneID:3790999
KEGG:pyo:PY05226 EuPathDB:PlasmoDB:PY05226 Uniprot:Q7RE42
Length = 886
Score = 606 (218.4 bits), Expect = 2.8e-84, Sum P(3) = 2.8e-84
Identities = 128/310 (41%), Positives = 174/310 (56%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
+W L H G+IF PPY+ H + + YK ++ L P+ EE+AT + ++ TDY K KF N
Sbjct: 207 QWNYLEHRGIIFSPPYVQHNIPIFYKSIKIELNPKAEELATYWCSVIGTDYCTKDKFILN 266
Query: 462 FWNDWRKLLGKNHVIQ-------------NLEGCDFKPIYDWHXXXXXXXXXXXXXXXXX 508
F+ + L K+++I+ N + DF I +
Sbjct: 267 FFKTFINNLEKDNIIRRENENKIKNGDISNFKFIDFMTIKEHLIKLREERLNKTKEEKEE 326
Query: 509 XXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINI 568
Y +A+VD ++EK+ + + EPPGLFRGRGEHPK G LKKRI P D+ INI
Sbjct: 327 EKKIRMEKELPYTFALVDWIREKISSNKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINI 386
Query: 569 GKDVPIPEC--PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDRE 626
KD P P + G +W ++ HDN VTWLA++ D IN + KY FL+A S KG D
Sbjct: 387 SKDAPAPRLYDDMCGHNWGDIYHDNKVTWLAYYKDSIND-QIKYTFLSAQSKFKGYKDFL 445
Query: 627 KYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKD-DDEADTV 685
KYE ARKLK +H IR Y +++ +Q+ A YLID LALR G EKD D+EADTV
Sbjct: 446 KYENARKLKSCVHKIRKDYQNKMKNKNIVNKQLGTAVYLIDFLALRVGGEKDIDEEADTV 505
Query: 686 GCCTLKVGNV 695
GCC+L+V +V
Sbjct: 506 GCCSLRVEHV 515
Score = 221 (82.9 bits), Expect = 2.8e-84, Sum P(3) = 2.8e-84
Identities = 62/166 (37%), Positives = 92/166 (55%)
Query: 675 NEKDDDEADT-VGCCTLKVGNVECIPPNK--LKFDFLGKDSIQYVNTVEVELPVYKAIGQ 731
NE +DE D + L N+E I + + DFLGKDSI+Y NTV+++ Y +
Sbjct: 525 NENTNDENDNKISKIPLPK-NLEDILEDDCYITLDFLGKDSIRYFNTVKIDKQAYINMII 583
Query: 732 FQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLN-----KGTGD 786
F K +++ +FD++ +KLN +LKE+MP L+AKVFRTYNASITLD L KG D
Sbjct: 584 FCKNKNKDEGVFDQITCSKLNEYLKEIMPTLSAKVFRTYNASITLDQQLRRLKEIKGKND 643
Query: 787 GDVAVKIDVYQRANKEVAI--ICNHQRTVSKTHSAQMSRLTEKIED 830
D + D+ R K++ + + +S + A + EK E+
Sbjct: 644 -DSLLSCDIDIRKPKKIKLENATSSSNVLSDYNDAPNNEKIEKKEN 688
Score = 111 (44.1 bits), Expect = 9.9e-73, Sum P(3) = 9.9e-73
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 793 IDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK 847
I+ + AN+EVAI+CNHQR++ K H MS++ ++IE +++ + L KK
Sbjct: 721 INFFNNANREVAILCNHQRSIPKQHDTTMSKIKKQIEIYNEDMQEYKKYLQYLKK 775
Score = 57 (25.1 bits), Expect = 2.8e-84, Sum P(3) = 2.8e-84
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 188 NGLKSDDNDSEDDKPLSARLKGN--SKNVNQG-IGASKA-DAAISEVNVKTDPEDSDDEV 243
N + DD+ S+DD L +K N S +N I +K D I++ + D + +D ++
Sbjct: 6 NNYRGDDSTSDDDI-LIDNIKKNVYSTKLNDTQINDAKINDTKINDSKIN-DSKINDTQI 63
Query: 244 PLSSR-FP-KSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKR 295
++ P K N T+ +K + EK +V +T R+ ++ + +K+
Sbjct: 64 NDNTTCIPNKENVITNNSKS-SAKEKCSTIRRVGSKLNTKRKNEENLNVCKIKK 116
Score = 45 (20.9 bits), Expect = 5.2e-83, Sum P(3) = 5.2e-83
Identities = 27/128 (21%), Positives = 54/128 (42%)
Query: 177 AVVKKEEIKDGNGLKSDDNDSE-DDKPLSARLKGNSKNVNQGIGASKADAAI----SEVN 231
A + +I D S ND++ +D K N N A + + I S++N
Sbjct: 41 AKINDTKINDSKINDSKINDTQINDNTTCIPNKENVITNNSKSSAKEKCSTIRRVGSKLN 100
Query: 232 VKTDPEDSDDEVPLSSRFPKSNAGTSG--AKPIDSDEKKPLASKVQQNGSTSRETQQKSS 289
K E++ + + + +A + S+ KK L ++++ T +E+ +KSS
Sbjct: 101 TKRKNEENLNVCKIKKKQKSISADNDNLNSNNTTSEGKKTL-KHLKESVKTKKESGEKSS 159
Query: 290 SVPVKRPL 297
V ++ +
Sbjct: 160 RVKEEKKI 167
Score = 39 (18.8 bits), Expect = 2.2e-82, Sum P(3) = 2.2e-82
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 252 SNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKR 295
SN TS K K+ + +K + +SR ++K + VK+
Sbjct: 130 SNNTTSEGKKTLKHLKESVKTKKESGEKSSRVKEEKKIANKVKK 173
Score = 39 (18.8 bits), Expect = 2.2e-82, Sum P(3) = 2.2e-82
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 226 AISEVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQ---NGSTSR 282
+I E N + D SDD++ + + K N ++ ++ K +K+ N S
Sbjct: 2 SIVENNYRGDDSTSDDDILIDNI--KKNVYSTKLNDTQINDAKINDTKINDSKINDSKIN 59
Query: 283 ETQ--QKSSSVPVK 294
+TQ ++ +P K
Sbjct: 60 DTQINDNTTCIPNK 73
Score = 39 (18.8 bits), Expect = 3.5e-65, Sum P(3) = 3.5e-65
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 737 KQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGML 780
K+ +++++ D + +L+ L K F + +TLDG L
Sbjct: 753 KKQIEIYNE-DMQEYKKYLQYLKKNNNEKEFTFVSKVVTLDGSL 795
>UNIPROTKB|E5RIC7 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
SMART:SM00435 GO:GO:0005739 GO:GO:0005694 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AC087793 HGNC:HGNC:29787
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
Gene3D:3.90.15.10 SUPFAM:SSF56741 IPI:IPI00974556
ProteinModelPortal:E5RIC7 SMR:E5RIC7 Ensembl:ENST00000519139
UCSC:uc010mfd.1 ArrayExpress:E5RIC7 Bgee:E5RIC7 Uniprot:E5RIC7
Length = 328
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 145/308 (47%), Positives = 192/308 (62%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXX 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ +
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 XXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
+ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPEPPA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEA-D 683
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D EA D
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAAD 238
Query: 684 TVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ 738
TVGCC+L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K
Sbjct: 239 TVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDP 298
Query: 739 NDDLFDKL 746
DDLFD+L
Sbjct: 299 RDDLFDRL 306
>UNIPROTKB|E5RFS0 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
SMART:SM00435 GO:GO:0005739 GO:GO:0005694 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AC087793 HGNC:HGNC:29787
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
Gene3D:3.90.15.10 SUPFAM:SSF56741 IPI:IPI00979115
ProteinModelPortal:E5RFS0 SMR:E5RFS0 Ensembl:ENST00000522041
ArrayExpress:E5RFS0 Bgee:E5RFS0 Uniprot:E5RFS0
Length = 221
Score = 493 (178.6 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 97/223 (43%), Positives = 133/223 (59%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXX 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ +
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 XXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
+ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPEPPA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLID 667
+K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y ID
Sbjct: 179 WQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 221
>UNIPROTKB|E5RJ95 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR008336 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR014711
Pfam:PF02919 SMART:SM00435 GO:GO:0005739 GO:GO:0005694
GO:GO:0006265 EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:2.170.11.10 Gene3D:3.90.15.10
SUPFAM:SSF56741 IPI:IPI00984236 ProteinModelPortal:E5RJ95
SMR:E5RJ95 Ensembl:ENST00000519591 ArrayExpress:E5RJ95 Bgee:E5RJ95
Uniprot:E5RJ95
Length = 201
Score = 449 (163.1 bits), Expect = 8.0e-42, P = 8.0e-42
Identities = 86/201 (42%), Positives = 120/201 (59%)
Query: 447 MLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHXXXXXXXXXXXXX 504
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF I+ +
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 505 XXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDI 564
+ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 565 TINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSD 624
IN +D IPE P G WKEV+ DNTVTWLA W + + KY+ L S LKG++
Sbjct: 121 VINCSRDSKIPEPPA-GHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETA 178
Query: 625 REKYEKARKLKDYIHSIRAAY 645
+K+E AR+L+ ++ IR+ Y
Sbjct: 179 WQKFETARRLRGFVDEIRSQY 199
>UNIPROTKB|E5RGE7 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013030 InterPro:IPR013034
Pfam:PF02919 GO:GO:0005694 GO:GO:0006265 EMBL:AC087793
HGNC:HGNC:29787 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
SUPFAM:SSF56741 IPI:IPI00974511 ProteinModelPortal:E5RGE7
SMR:E5RGE7 Ensembl:ENST00000518007 ArrayExpress:E5RGE7 Bgee:E5RGE7
Uniprot:E5RGE7
Length = 134
Score = 216 (81.1 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 45/95 (47%), Positives = 59/95 (62%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K
Sbjct: 18 DGVK-WRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTK 76
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIY 488
FR+NF+NDWRK + + VI++L+ CDF I+
Sbjct: 77 EVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIH 111
>UNIPROTKB|E5RGR2 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013030 InterPro:IPR013034
Pfam:PF02919 GO:GO:0005694 GO:GO:0006265 EMBL:AC087793
HGNC:HGNC:29787 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
SUPFAM:SSF56741 IPI:IPI00976362 ProteinModelPortal:E5RGR2
SMR:E5RGR2 Ensembl:ENST00000518951 ArrayExpress:E5RGR2 Bgee:E5RGR2
Uniprot:E5RGR2
Length = 167
Score = 216 (81.1 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 45/95 (47%), Positives = 59/95 (62%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K
Sbjct: 49 DGVK-WRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTK 107
Query: 456 PKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIY 488
FR+NF+NDWRK + + VI++L+ CDF I+
Sbjct: 108 EVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIH 142
>UNIPROTKB|E5RGR4 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013030 InterPro:IPR013034
Pfam:PF02919 GO:GO:0005694 GO:GO:0006265 EMBL:AC087793
HGNC:HGNC:29787 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
SUPFAM:SSF56741 IPI:IPI00974139 ProteinModelPortal:E5RGR4
SMR:E5RGR4 Ensembl:ENST00000518760 ArrayExpress:E5RGR4 Bgee:E5RGR4
Uniprot:E5RGR4
Length = 164
Score = 216 (81.1 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 47/102 (46%), Positives = 61/102 (59%)
Query: 394 PGSGDGQK-------KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMF 444
PGSG +K KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT +
Sbjct: 63 PGSGRWEKEKHEDGVKWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFY 122
Query: 445 AVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDF 484
MLD +Y K FR+NF+NDWRK + + VI++L+ CDF
Sbjct: 123 GRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDF 164
>UNIPROTKB|H0YC03 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013034 Pfam:PF02919 GO:GO:0005694
GO:GO:0006265 EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917
Gene3D:1.10.10.41 SUPFAM:SSF56741 Ensembl:ENST00000523417
Uniprot:H0YC03
Length = 123
Score = 202 (76.2 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
DG K W L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K
Sbjct: 44 DGVK-WRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTK 102
Query: 456 PKFRENFWNDWRKLLGKNHVI 476
FR+NF+NDWRK+L + H++
Sbjct: 103 EVFRKNFFNDWRKVLCQTHML 123
>UNIPROTKB|E5RFE3 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013034 Pfam:PF02919 GO:GO:0005694
GO:GO:0006265 EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917
Gene3D:1.10.10.41 SUPFAM:SSF56741 IPI:IPI00974575
ProteinModelPortal:E5RFE3 SMR:E5RFE3 Ensembl:ENST00000522043
ArrayExpress:E5RFE3 Bgee:E5RFE3 Uniprot:E5RFE3
Length = 164
Score = 137 (53.3 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 32/71 (45%), Positives = 39/71 (54%)
Query: 394 PGSGDGQK-------KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMF 444
PGSG +K KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT +
Sbjct: 94 PGSGRWEKEKHEDGVKWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFY 153
Query: 445 AVMLDTDYMQK 455
MLD +Y K
Sbjct: 154 GRMLDHEYTTK 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 868 747 0.00089 121 3 11 23 0.47 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 626 (67 KB)
Total size of DFA: 392 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 74.57u 0.11s 74.68t Elapsed: 00:00:04
Total cpu time: 74.59u 0.11s 74.70t Elapsed: 00:00:04
Start: Fri May 10 00:04:18 2013 End: Fri May 10 00:04:22 2013