BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002904
(868 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30181|TOP1_ARATH DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1
Length = 916
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/795 (62%), Positives = 580/795 (72%), Gaps = 60/795 (7%)
Query: 129 AKASPSK--SPMRSPVKSP---VRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEE 183
+KA P+ SPMRSPV SP S S V +S SS +SP N + K+
Sbjct: 46 SKAVPTTKVSPMRSPVTSPNGTTPSNKTSIVKSSMPSSSSKASPAKSPLRNDMPSTVKDR 105
Query: 184 I---KDGNGLKSDDNDSEDDKPLSARLKGN-----SKNVN--QGIGASKADAAISEVNVK 233
KD + K + DSEDD+PLS+ L GN S+ V+ Q + D + + +
Sbjct: 106 SQLQKDQSECKIEHEDSEDDRPLSSILSGNKGPTSSRQVSSPQPEKKNNGDRPLDRAS-R 164
Query: 234 TDPEDSDDEVPLSSRFPKS-NAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVP 292
++SDDE P+SS F K ++G SG + +DEKKPL K+ QNGST + + + V
Sbjct: 165 IIKDESDDETPISSMFRKKIDSGMSGGNQLSNDEKKPLVQKLHQNGSTVK-NEVPNGKVL 223
Query: 293 VKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHI------------- 339
KRPL+K SS+ SS KK K+S + VK+KQ +VK K+ DD +
Sbjct: 224 GKRPLEKNSSADQSSLKKAKISASPTSVKMKQDSVK--KEIDDKGRVLVSPKMKAKQLST 281
Query: 340 -------------PISQRMKNSAP----------SVKKSVTNTA---KATKSVSSSSNKI 373
PIS+R K+ + +VK + T++A KA VS S +
Sbjct: 282 REDGTDDDDDDDVPISKRFKSDSSNSNTSSAKPKAVKLNSTSSAAKPKARNVVSPRSRAM 341
Query: 374 NKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNL 433
K TKKV K+S+YS S+K P SGDGQKKWTTLVHNGVIFPPPY PHG+K+LYKGK V+L
Sbjct: 342 TKNTKKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDL 401
Query: 434 TPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQE 493
T EQEEVATMFAVM +TDY KP+FRENFWNDWR+LLGK HVIQ L+ CDF PIY+WH E
Sbjct: 402 TIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLE 461
Query: 494 QKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMG 553
+KEKKKQMS+EEKKALKEEK KQEEKYMWA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMG
Sbjct: 462 EKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMG 521
Query: 554 KLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFL 613
KLKKRI P +IT+NIGK PIPECPI GE WKEVKHDNTVTWLAFW DPINPKEFKYVFL
Sbjct: 522 KLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFL 581
Query: 614 AASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRA 673
A SSLKG SD+EKYEKAR L D+I +IR YTK+F ++D RQIAVATYLIDKLALRA
Sbjct: 582 GAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRA 641
Query: 674 GNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQ 733
GNEKDDDEADTVGCCTLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ
Sbjct: 642 GNEKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQ 701
Query: 734 TGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKI 793
GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI
Sbjct: 702 AGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKI 761
Query: 794 DVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLM 853
VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +IE+LK VLK+L+ +LDRAKKGKPPL
Sbjct: 762 VVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL- 820
Query: 854 KDSDGKRKRNLAPEA 868
+ SDGK+ R+L P A
Sbjct: 821 EGSDGKKIRSLEPNA 835
>sp|P93119|TOP1_DAUCA DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1
Length = 790
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/711 (59%), Positives = 509/711 (71%), Gaps = 53/711 (7%)
Query: 172 QHNALAVVKKEEIKDGNGLKSDDNDSEDDKPLSARL-----KGNSKNVNQGIGASKADAA 226
+ NA V++K ++G +S+ DS+DDKPLS +L GNS ++ G S
Sbjct: 11 KQNASNVMEKTLKEEGQS-RSNSEDSDDDKPLSHKLSSGALNGNSHHIRMGSNLSCPSPY 69
Query: 227 IS-EVNVKTDPEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQ 285
S + + PE DE+ LSS + NAG S A+ DSDE KPLAS E +
Sbjct: 70 TSPKPRIIKGPE---DEMLLSSEL-QLNAGASNAESSDSDESKPLAS----------ELE 115
Query: 286 QKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRM 345
SSS+ KRPL + +S S +KK K+S+ S K T + E+ A DDD ++
Sbjct: 116 DPSSSLN-KRPLIQPKNSDPSPSKKAKLSEPSAPTNRKLKTAEQEEAAADDDPSISNRNK 174
Query: 346 KNSAPSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTK---MLPGSGDGQKK 402
K++ P+ K S K VS+S NK++ +SKS K +L +GQ
Sbjct: 175 KSTTPASKVS---DKKKRPDVSASVNKVD-----------FSKSLKVPLVLVKGRNGQ-- 218
Query: 403 WTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENF 462
LVHNGVIFPP Y PHGVKMLY+ V+LTPEQEEVATMFAVML+T+YM KPKFRENF
Sbjct: 219 --PLVHNGVIFPPLYKPHGVKMLYRENPVDLTPEQEEVATMFAVMLETEYMTKPKFRENF 276
Query: 463 WNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNK-QEEKYM 521
+DWRK+LG+ H+IQNLE CDF PIY+WHQ +KEKKKQMS++EKKA+KE K++ ++EKYM
Sbjct: 277 MSDWRKILGEKHIIQNLEDCDFTPIYEWHQREKEKKKQMSTDEKKAIKEGKDETRKEKYM 336
Query: 522 WAIVDGV-KEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPS-DITINIGKDVPIPECPI 579
WA+VDG+ +EKVGNFRV + + K ++KK + DITINIGKD PIPE PI
Sbjct: 337 WAVVDGMSREKVGNFRVGTTRVVQRSWRASKDPQVKKNVYSQIDITINIGKDAPIPEPPI 396
Query: 580 PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIH 639
PGE WKE++HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKG+ REKYEK+RKLKDYI
Sbjct: 397 PGERWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGKVTREKYEKSRKLKDYIE 456
Query: 640 SIR-AAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECI 698
IR AAYTKDF S+D +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE
Sbjct: 457 GIRAAAYTKDFASKDSKKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVETK 516
Query: 699 PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKEL 758
PN LKFDFLGKDSI+Y N VEVE V+ AI QF++GK+ DDLFD+LDT+KLNAHLKEL
Sbjct: 517 RPNILKFDFLGKDSIRYQNEVEVEPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKEL 576
Query: 759 MPGLTAKVFRTYNASITLDGM-----LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTV 813
MPGLTAKVFRTYNASITLD M L++ T GDVA K+ VYQ ANKEVAIICNHQRTV
Sbjct: 577 MPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTV 636
Query: 814 SKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNL 864
SK+HSAQM RL EKIE+LKG+LK+L+ DL R KGKPPL K+SDGK KRNL
Sbjct: 637 SKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL-KNSDGKPKRNL 686
>sp|P07799|TOP1_SCHPO DNA topoisomerase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top1 PE=1 SV=2
Length = 814
Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/471 (54%), Positives = 327/471 (69%), Gaps = 12/471 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D +KWTTL HNGVIF PPY LP VK++Y G VNL PE EEVA +A ML+TD+ +
Sbjct: 190 DDTQKWTTLEHNGVIFAPPYEPLPKNVKLIYDGNPVNLPPEAEEVAGFYAAMLETDHAKN 249
Query: 456 PKFRENFWNDWRKLLGK---NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEE 512
P F++NF+ D+ K+ + NH I+ CDF ++ ++++E+KK M E+KKA+K++
Sbjct: 250 PVFQDNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQK 309
Query: 513 KNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDV 572
K+++EEKY W I+DG KEKVGNFR+EPPGLFRGRG HPK G LK+R+ P ITINIG+ V
Sbjct: 310 KDEEEEKYKWCILDGRKEKVGNFRIEPPGLFRGRGSHPKTGSLKRRVYPEQITINIGEGV 369
Query: 573 PIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKAR 632
P+PE P+PG W EVKHDNTVTWLA W++ IN KYVFLAA SSLKGQSD +KYEK+R
Sbjct: 370 PVPE-PLPGHQWAEVKHDNTVTWLATWHENIN-NNVKYVFLAAGSSLKGQSDLKKYEKSR 427
Query: 633 KLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV 692
KLKDYI IR Y KD S RQ A YLID ALRAGNEK +DEADTVGCC+L+
Sbjct: 428 KLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLIDVFALRAGNEKGEDEADTVGCCSLRY 487
Query: 693 GNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT-GKKQNDDLFDKLDTAKL 751
+V PP + FDFLGKDSI+Y N VEV+ V+K + F+ KK+ D +FD+L T L
Sbjct: 488 EHVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKRPPKKEGDLIFDRLSTNSL 547
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQR 811
N +L LM GL+AKVFRTYNAS T+ L K + +A KI Y RAN+ VAI+CNHQR
Sbjct: 548 NKYLTSLMDGLSAKVFRTYNASYTMAEELKKMPKNLTLADKILFYNRANRTVAILCNHQR 607
Query: 812 TVSKTHSAQMSRLTEKIEDL---KGVLKDLRVDLD-RAKKGKPPLMKDSDG 858
+V+K H QM R E+I+ L + L+ + ++L+ + K KP L+ +G
Sbjct: 608 SVTKNHDVQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEG 658
>sp|Q54RC3|TOP1_DICDI DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1
Length = 893
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/460 (51%), Positives = 320/460 (69%), Gaps = 10/460 (2%)
Query: 402 KWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFREN 461
KWTTL+HNG +FPP Y+PHG+K +Y GK V LTP+QEEVAT +A L+TD+++K F++N
Sbjct: 311 KWTTLIHNGPVFPPAYVPHGIKFMYDGKVVKLTPKQEEVATFYANYLETDHVKKQAFKDN 370
Query: 462 FWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEK 519
F+ +++ LL + +++ ++ CDF I+ + +KE++K S EEK A EK K +EK
Sbjct: 371 FFKEFKGLLTSEQKEIVKKMDKCDFSHIHTHLKTKKEQRKARSKEEKDAETAEKKKIQEK 430
Query: 520 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPI 579
+ +A +DG KEKVGN+ +EPPGLF GRG+HPK G LK+RI PSD+T+NIG+ IP PI
Sbjct: 431 HGFATIDGFKEKVGNYMIEPPGLFLGRGQHPKTGMLKQRIMPSDVTLNIGEGEVIPPSPI 490
Query: 580 PGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIH 639
PGE WKE+ H+NTVTWLAFW + +N FKYV+LA SS +KGQ+DR+K+E AR LK+ I
Sbjct: 491 PGEKWKEIVHNNTVTWLAFWRESVN-GGFKYVWLAPSSKIKGQADRKKFEVARGLKNCIG 549
Query: 640 SIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP 699
IR Y K F +RQ+AVA YLID LALR GNEK +D+ADTVGCC+L+V +++
Sbjct: 550 DIRKGYQKSFNDESTEKRQLAVALYLIDFLALRVGNEKGEDQADTVGCCSLRVEHIKLES 609
Query: 700 PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELM 759
N + DFLGKDS++Y+NTV++ YK + F GKK D LFD L +LN HLK+ M
Sbjct: 610 NNTITLDFLGKDSMRYLNTVQIREDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQM 669
Query: 760 PGLTAKVFRTYNASITLDGMLNKGTGDGDVAV--KIDVYQRANKEVAIICNHQRTVSKTH 817
GL+AKVFRTYNASITL L+K ++ KI Y R N+EVAI+CNHQ+ K
Sbjct: 670 TGLSAKVFRTYNASITLQKELDKMDTKEFQSIDEKILFYNRCNREVAILCNHQKAPPKNL 729
Query: 818 SAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSD 857
+ MS++ EKI++ L+DL+ DL R K GK P + D
Sbjct: 730 AETMSKIDEKIQE----LRDLQ-DLCRIKIGKTPKSQQED 764
>sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP1 PE=1 SV=2
Length = 769
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/444 (52%), Positives = 307/444 (69%), Gaps = 11/444 (2%)
Query: 398 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQK 455
D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ +
Sbjct: 140 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKN 199
Query: 456 PKFRENFWNDWRKLLGK-----NHV-IQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKAL 509
P F++NF+ND+ ++L + N + I+ CDF ++D+ Q QKE+KKQ++S+EKK +
Sbjct: 200 PVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 259
Query: 510 KEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIG 569
+ E+ K EE Y + +DG +E+VGNF+VEPP LFRGRG HPK GKLK+R+ P DI +N+
Sbjct: 260 RLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLS 319
Query: 570 KDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYE 629
KD P+P P G W E++HDNTV WLA W + I FKYV LAA+SSLKGQSD +K+E
Sbjct: 320 KDAPVPPAP-EGHKWGEIRHDNTVQWLAMWRENIF-NSFKYVRLAANSSLKGQSDYKKFE 377
Query: 630 KARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 689
KAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGCC+
Sbjct: 378 KARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCS 437
Query: 690 LKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDT 748
L+ +V PPN + FDFLGKDSI++ VEV+ V+K + F+ KQ LFD+LD
Sbjct: 438 LRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDP 497
Query: 749 AKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICN 808
+ LN +L+ MPGLTAKVFRTYNAS T+ L+ G VA KI Y AN+ VAI+CN
Sbjct: 498 SILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCN 557
Query: 809 HQRTVSKTHSAQMSRLTEKIEDLK 832
HQRTV+K H+ + + +I++L+
Sbjct: 558 HQRTVTKGHAQTVEKANNRIQELE 581
>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2
SV=1
Length = 601
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/439 (50%), Positives = 289/439 (65%), Gaps = 13/439 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+G+ V L+ EEVAT + MLD +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEEVATFYGRMLDHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 QEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 231 PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 349
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T L
Sbjct: 350 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSL 409
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQ
Sbjct: 410 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 469
Query: 811 RTVSKTHSAQMSRLTEKIE 829
R T M L KI+
Sbjct: 470 RATPSTFEKSMQNLQTKIQ 488
>sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1
Length = 972
Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/437 (51%), Positives = 290/437 (66%), Gaps = 12/437 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW+TL H G +F P Y +P V+ Y GK + L+ E EE AT +A ML+ DY K F
Sbjct: 439 KWSTLEHKGPVFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN 498
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF+ D+RK + + +I++ C+F+ ++++ Q + EK+K S EEK K E
Sbjct: 499 NNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKLIKKNENEALM 558
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG KEK+GNFR+EPPGLFRGRGEHPKMG +K+RIQ SD++IN GKD +P
Sbjct: 559 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVP-S 617
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWLA W + + + KY+ L SS LKG+ D KYE AR+L
Sbjct: 618 PPPGSRWKEVRHDNTVTWLASWIENVQG-QVKYIMLNPSSKLKGEKDHIKYETARRLDKV 676
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVEC 697
I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +V+
Sbjct: 677 IDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQL 736
Query: 698 I-----PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLN 752
N + FDF GKDSI+Y N VEVE V+K + F KK+ DDLFD+L+T LN
Sbjct: 737 HKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLN 796
Query: 753 AHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQR 811
HLKELM GLTAKVFRTYNAS TL L+ T V K+ Y RAN+ VAI+CNHQR
Sbjct: 797 EHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAVAILCNHQR 856
Query: 812 TVSKTHSAQMSRLTEKI 828
+V K+H M L EKI
Sbjct: 857 SVPKSHEKSMENLKEKI 873
>sp|A9Q1D5|TOP1M_PANTR DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT
PE=2 SV=1
Length = 601
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/439 (50%), Positives = 287/439 (65%), Gaps = 13/439 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F PPY LP GV+ Y+GK V L+ EEVAT + ML +Y K FR
Sbjct: 52 KWRQLEHKGPYFAPPYEPLPDGVRFFYEGKPVRLSVAAEEVATFYGRMLGHEYTTKEVFR 111
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+NDWRK + + VI++L+ CDF I+ + ++ +K +S EEK+ LKEE K +
Sbjct: 112 KNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQ 171
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++ + I+DG +EK+GNF++EPPGLFRGRG+HPKMG LK+RI P D+ IN +D IPE
Sbjct: 172 REFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRIMPEDVVINCSRDSKIPE- 230
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTVTWLA W + + KY+ L S LKG++ +K+E AR+L+ +
Sbjct: 231 PPAGHQWKEVRSDNTVTWLAAWTESVQ-NSIKYIMLNPCSKLKGETAWQKFETARRLRGF 289
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGCC+L+V +V+
Sbjct: 290 VDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQ 349
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++FDFLGKD I+Y N V VE PVYK + F K D+LFD+L T L
Sbjct: 350 LHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRDNLFDRLTTTSL 409
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQ 810
N HL+ELM GLTAKVFRTYNASITL L T D +A KI Y RAN+ VAI+CNHQ
Sbjct: 410 NKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQ 469
Query: 811 RTVSKTHSAQMSRLTEKIE 829
R T M L KI+
Sbjct: 470 RATPSTFEKSMQNLQTKIQ 488
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2
Length = 765
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/470 (50%), Positives = 301/470 (64%), Gaps = 14/470 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 216 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 275
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 276 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 335
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 336 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 394
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 395 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 453
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 454 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 513
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 514 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 573
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 574 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 633
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL A K +MKD+ K+
Sbjct: 634 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK 682
>sp|Q7YR26|TOP1_CHLAE DNA topoisomerase 1 OS=Chlorocebus aethiops GN=TOP1 PE=2 SV=1
Length = 767
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/470 (50%), Positives = 301/470 (64%), Gaps = 14/470 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPDSVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + ++I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL A K +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDAKTKK 684
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/456 (50%), Positives = 292/456 (64%), Gaps = 13/456 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY +P VK Y G V L+P+ EEVAT FA MLD +Y K FR
Sbjct: 272 KWKFLEHKGPVFAPPYEPVPDNVKFYYDGNLVKLSPKAEEVATFFAKMLDHEYTTKDIFR 331
Query: 460 ENFWNDWRKLL--GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DW+K + + ++I NL CDF + + +EQ E +K M+ EEK +K E +
Sbjct: 332 KNFFKDWKKEMTTDERNLITNLSKCDFNAMSLYFKEQSEARKNMTKEEKLKIKAENERLL 391
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + I+D KE++ NFR+EPPGLFRGRG+HPKMGKLKKRI P DI IN KD IP
Sbjct: 392 QEYGYCIMDNHKERIANFRIEPPGLFRGRGDHPKMGKLKKRIMPEDIIINCSKDSKIPVA 451
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+HD VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 452 P-AGHKWKEVRHDGKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKMC 509
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 510 VEKIRNTYKEDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 569
Query: 697 CIPPNK-----LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
++FDF GKDSI+Y N V VE V+K + F K+ +DDLFD+L+T+ L
Sbjct: 570 LFQELDGQEFVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPDDDLFDRLNTSIL 629
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L++ T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 630 NKHLQDLMEGLTAKVFRTYNASITLQQQLDELTNSDDNVPAKILSYNRANRAVAILCNHQ 689
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
R KT M L KI+ K L D R + AK
Sbjct: 690 RAPPKTFEKSMMNLQGKIDAKKDQLADARREFKSAK 725
>sp|O17966|TOP1_CAEEL DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1
Length = 806
Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/443 (52%), Positives = 291/443 (65%), Gaps = 20/443 (4%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW +L H G +F PPY LP V Y G+++ LT E EE+A +A +LD +Y K F
Sbjct: 258 KWNSLQHCGPLFAPPYIPLPSHVHFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFN 317
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF DWRK++ + I +L+ CDF+ I + +EQ+E +K M+ EEK +KEEK +
Sbjct: 318 KNFMKDWRKVMTVEERERIHDLKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEV 377
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+ Y AI+DG ++KV NFR+EPPG+FRGRG HPKMG +KKRI P D+ IN GKD IP+
Sbjct: 378 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 437
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDNTVTWL W + + + KY+ L SS +KG+ D EKYE AR+LK
Sbjct: 438 P-PGHKWKEVRHDNTVTWLCSWTESVLGQN-KYIMLNPSSKIKGEKDFEKYETARRLKKK 495
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
I IR YT DF S++ RQ A A Y IDKLALRAGNEKD DE ADTVGCC+L+V +++
Sbjct: 496 IGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIK 555
Query: 697 CIPPNKL------------KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFD 744
KL +FDFLGKDSI+Y N V VE VYK + F GK +DDLFD
Sbjct: 556 LFDSAKLNEDDKKEKEFVVEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFD 615
Query: 745 KLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEV 803
+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++V
Sbjct: 616 RLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQV 675
Query: 804 AIICNHQRTVSKTHSAQMSRLTE 826
AI+CNHQR VSK M +L +
Sbjct: 676 AILCNHQRAVSKGFDESMQKLEQ 698
>sp|Q00313|TOP1_CANAX DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE=3 SV=1
Length = 778
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/439 (51%), Positives = 297/439 (67%), Gaps = 9/439 (2%)
Query: 397 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454
GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ +
Sbjct: 151 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAK 210
Query: 455 KPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALK 510
P F++NF+ND+ ++L G I+ E DF +Y ++ +E+KK MS EEKK +K
Sbjct: 211 NPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMYAHFEKLREEKKAMSREEKKRIK 270
Query: 511 EEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGK 570
EEK K+EE Y ++G KE VGNFR+EPPGLFRGRG HPK GKLK+R+ +T+N+GK
Sbjct: 271 EEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFRGRGAHPKTGKLKRRVVSEQVTLNLGK 330
Query: 571 DVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEK 630
D IPE P G W E++HDN VTWLA W + I+ KYV A +SS+KGQSD +K+E
Sbjct: 331 DAKIPEPP-AGHQWGEIRHDNEVTWLAMWKENISD-SLKYVRFANNSSVKGQSDFKKFET 388
Query: 631 ARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 690
ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGCC+L
Sbjct: 389 ARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSL 448
Query: 691 KVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQ-NDDLFDKLDTA 749
+ +V PPNK+ FD LGKDSI++ VEV+ V+K + F+ KQ DDLFD+++ +
Sbjct: 449 RYEHVTLKPPNKVIFDLLGKDSIRFYQEVEVDKQVFKNLRIFKKSPKQPGDDLFDRINPS 508
Query: 750 KLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNH 809
+N L+ M GLTAKVFRTYNAS T+ ++ +G VA K+ + AN+ VAI+CNH
Sbjct: 509 LVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEGTVAEKVAKFNAANRTVAILCNH 568
Query: 810 QRTVSKTHSAQMSRLTEKI 828
QRTVSKTH + R+ +K+
Sbjct: 569 QRTVSKTHGDSVQRINDKL 587
>sp|Q07050|TOP1_CRIGR DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1
Length = 767
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/470 (50%), Positives = 301/470 (64%), Gaps = 14/470 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + +VI NL CDF + + ++Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDEKNVITNLSKCDFTQMSQYFKDQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTV CC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVSCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL A K +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK 684
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1
Length = 767
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/470 (50%), Positives = 300/470 (63%), Gaps = 14/470 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL A K +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARKDLKSA-KADAKVMKDAKTKK 684
>sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2
Length = 767
Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/470 (50%), Positives = 299/470 (63%), Gaps = 14/470 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR
Sbjct: 218 KWKFLEHKGPVFAPPYEPLPESVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFR 277
Query: 460 ENFWNDWRKLLGKN--HVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
+NF+ DWRK + + + I NL CDF + + + Q E +KQMS EEK +KEE K
Sbjct: 278 KNFFKDWRKEMTNDEKNTITNLSKCDFTQMSQYFKAQSEARKQMSKEEKLKIKEENEKLL 337
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
++Y + ++D +E++ NF++EPPGLFRGRG HPKMG LK+RI P DI IN KD +P
Sbjct: 338 KEYGFCVMDNHRERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVP-S 396
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P PG WKEV+HDN VTWL W + I KY+ L SS +KG+ D +KYE AR+LK
Sbjct: 397 PPPGHKWKEVRHDNKVTWLVSWTENIQG-SIKYIMLNPSSRIKGEKDWQKYETARRLKKC 455
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IR Y +D+ S++ RQ AVA Y IDKLALRAGNEK++ E ADTVGCC+L+V ++
Sbjct: 456 VDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIN 515
Query: 697 CIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T L
Sbjct: 516 LHPELDGQEYVVEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL 575
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQ
Sbjct: 576 NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQ 635
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKR 860
R KT M L KI+ K L D R DL A K +MKD+ K+
Sbjct: 636 RAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDAKTKK 684
>sp|Q8R4U6|TOP1M_MOUSE DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2
SV=1
Length = 593
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/456 (47%), Positives = 290/456 (63%), Gaps = 13/456 (2%)
Query: 402 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459
KW L H G F P Y LP GV LY GK + L+ EEVAT + ML + K FR
Sbjct: 45 KWRQLEHKGPYFTPAYEPLPDGVHFLYDGKPLKLSLAAEEVATFYGKMLHLECTSKEVFR 104
Query: 460 ENFWNDWRKLLG--KNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQE 517
NF++DWRK + + +I +L+ CDF I+ E+ E ++ + E+K+ LKEE K +
Sbjct: 105 RNFFSDWRKEMTPEERRLITHLDKCDFTEIHKHFLERAEARRTLPREQKQKLKEEAEKLQ 164
Query: 518 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPEC 577
+++ + ++DG +EK+GNF+ EPPGLFRGRG+HPKMG LK+R+ P D+ IN +D IPE
Sbjct: 165 QEFGYCVLDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVMPEDVVINCSRDSKIPE- 223
Query: 578 PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDY 637
P G WKEV+ DNTV WLA W + I FKYV L SS KG+ D +KYE AR+LK
Sbjct: 224 PPAGHQWKEVRSDNTVMWLAAWVEHIQ-NSFKYVILNPSSKPKGEMDWQKYEVARRLKGV 282
Query: 638 IHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVGNVE 696
+ IRA Y D+ S + +RQ+AVA Y IDKLALR GNEK++ E ADTVGCC+L+V ++
Sbjct: 283 VDKIRAQYQADWKSPEMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIR 342
Query: 697 CIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKL 751
P + ++ DFLGKDSI+Y N V VE V++ + F K DDLFD L T+ L
Sbjct: 343 LHAPAGGQEHVVELDFLGKDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSL 402
Query: 752 NAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQ 810
N HL++LM GLTAKVFRTYNAS+TL L T + V K+ Y RAN+ VA++CNHQ
Sbjct: 403 NKHLQDLMEGLTAKVFRTYNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQ 462
Query: 811 RTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846
R V KT M L +KIE K + + +V+L +A+
Sbjct: 463 RAVPKTFEKSMQTLQKKIETKKAQVAEAQVELQKAE 498
>sp|Q6IM78|TOP1M_RAT DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt
PE=2 SV=1
Length = 593
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/484 (46%), Positives = 304/484 (62%), Gaps = 21/484 (4%)
Query: 377 TKKVIKNSQYSKSTKMLPGSGDGQK---KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEV 431
+++V + S+ S++ G G+ K KW L H G F P Y LP GV+ Y GK V
Sbjct: 22 SRQVSRGSKASRA-----GWGETSKSSVKWKQLEHKGPCFAPAYEPLPDGVRFFYDGKPV 76
Query: 432 NLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLG--KNHVIQNLEGCDFKPIYD 489
L+ EEVAT + ML + K FR NF++DW+K + + +I +L+ CDF I+
Sbjct: 77 RLSLAAEEVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFSEIHR 136
Query: 490 WHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 549
E+ E ++ + E+K+ LKEE K ++++ + I+DG +EK+GNF+ EPPGLFRGRG+H
Sbjct: 137 HFMERAEARRTLPREQKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGDH 196
Query: 550 PKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFK 609
PKMG LK+R+ P D+ IN +D IPE P G WKEV+ DNTV WLA W + I FK
Sbjct: 197 PKMGMLKRRVMPEDVVINCSRDSKIPE-PPAGHQWKEVRSDNTVMWLAAWVENIQ-NSFK 254
Query: 610 YVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKL 669
Y+ L SS KG+ D +KYE AR+LK + IRA Y D+ S + +RQ+AVA Y IDKL
Sbjct: 255 YIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFIDKL 314
Query: 670 ALRAGNEKDDDE-ADTVGCCTLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVEL 723
ALR GNEK++ E ADTVGCC+L+V +V P + ++ DFLGKDSI+Y N V VE
Sbjct: 315 ALRTGNEKEEGETADTVGCCSLRVEHVRLHTPADGQEHVVELDFLGKDSIRYKNHVTVEK 374
Query: 724 PVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG 783
V++ + F K DDLFD L T+ LN HL++LM GLTAKVFRTYNASITL L
Sbjct: 375 LVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASITLQEQLRVL 434
Query: 784 TGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDL 842
T D + K+ Y RAN+ VA++CNHQR + KT M L +KIE K + + +V+L
Sbjct: 435 TRAEDSLTCKVLAYNRANRAVAVLCNHQRAIPKTFEESMQTLQKKIETKKAQVAEAQVEL 494
Query: 843 DRAK 846
+A+
Sbjct: 495 QKAE 498
>sp|P41511|TOP1_USTMA DNA topoisomerase 1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=TOP1 PE=3 SV=2
Length = 1019
Score = 329 bits (843), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 187/469 (39%), Positives = 269/469 (57%), Gaps = 46/469 (9%)
Query: 391 KMLPGSGDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVML 448
K + +G G+KKW L+H G FP PY LP VK+ Y G+ V+L + EE+A +AV L
Sbjct: 151 KTMSITGSGEKKWDVLIHKGPRFPDPYQPLPKDVKLKYDGRPVDLPWQTEEIAMFYAVKL 210
Query: 449 DTDYMQKPKFRENFWNDWRKLLGK-----NHVIQNLEGCDFKPIYDWHQEQK----EKKK 499
+T + Q F NF++D++ L K I++ + DF+ +Y++ + K E+KK
Sbjct: 211 ETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKLDFRDMYNYWRSLKDAELERKK 270
Query: 500 QMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI 559
++ +K EE+ +E K+ +VDGV+++VGN VEPPGLF GRG HPK GK+K+RI
Sbjct: 271 ALAPSARKREIEERKAEETKWKICLVDGVEQRVGNVNVEPPGLFLGRGAHPKAGKVKRRI 330
Query: 560 QPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 619
P DITIN D P P+ P W EV VTWLA+W + IN ++KYVFL A+S+
Sbjct: 331 SPGDITINHSADHPAPQPPAGMGDWAEVVEKKDVTWLAYWKENING-QYKYVFLDATSNF 389
Query: 620 KGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDD 679
K SDREK+EKARKL + IR K+ S+ RQIA +LID +LRAGNEK +
Sbjct: 390 KTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQIATIVWLIDNFSLRAGNEKGE 449
Query: 680 DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-VYKAIGQF------ 732
DEA+T G C+L+ + + P+ + +FLGKDS+++ +++ P V+K I F
Sbjct: 450 DEAETYGVCSLRCEHAQIKMPDTIHLEFLGKDSMKFEEDLKITNPDVFKNIAMFLKSNGM 509
Query: 733 --QTG----KKQNDDLF----------DKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
++G KK +D +F L +N L + M GL+AKVFRTYNAS+T
Sbjct: 510 KDKSGNYVRKKPSDPIFCAPESGSGKMQPLQPNSVNQFLSKYMKGLSAKVFRTYNASVTF 569
Query: 777 DGML-----------NKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVS 814
G+L N + + Y AN++VAI+CNHQ+TV+
Sbjct: 570 QGLLEQTEEWLKSRPNAAEREINQTNLRLAYNEANRQVAILCNHQKTVN 618
>sp|P32989|TOP1_VAR67 DNA topoisomerase 1 OS=Variola virus (isolate
Human/India/Ind3/1967) GN=TOP1 PE=1 SV=1
Length = 314
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 658 QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVN 717
Q+AV + +R G K E +TVG TLK ++E I P+K+ F+GKD + +
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIE-ISPDKIVIKFVGKDKVSHEF 174
Query: 718 TVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
V +YK + + + LF+KL K+ +K+ G+ K RTY + T
Sbjct: 175 VVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGVNYTF 231
>sp|P68698|TOP1_VACCW DNA topoisomerase 1B OS=Vaccinia virus (strain Western Reserve)
GN=TOP1 PE=1 SV=1
Length = 314
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 658 QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVN 717
Q+AV + +R G K E +TVG TLK ++E I P+++ F+GKD + +
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIE-ISPDEIVIKFVGKDKVSHEF 174
Query: 718 TVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
V +YK + + + LF+KL K+ +K+ G+ K RTY + T
Sbjct: 175 VVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGVNYTF 231
>sp|P68697|TOP1_VACCC DNA topoisomerase 1B OS=Vaccinia virus (strain Copenhagen) GN=TOP1
PE=2 SV=1
Length = 314
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 658 QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVN 717
Q+AV + +R G K E +TVG TLK ++E I P+++ F+GKD + +
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIE-ISPDEIVIKFVGKDKVSHEF 174
Query: 718 TVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
V +YK + + + LF+KL K+ +K+ G+ K RTY + T
Sbjct: 175 VVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGVNYTF 231
>sp|Q76ZS7|TOP1_VACCA DNA topoisomerase 1B OS=Vaccinia virus (strain Ankara) GN=TOP1 PE=2
SV=1
Length = 314
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 658 QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVN 717
Q+AV + +R G K E +TVG TLK ++E I P+++ F+GKD + +
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIE-ISPDEIVIKFVGKDKVSHEF 174
Query: 718 TVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITL 776
V +YK + + + LF+KL K+ +K+ G+ K RTY + T
Sbjct: 175 VVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGVNYTF 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,806,793
Number of Sequences: 539616
Number of extensions: 14759361
Number of successful extensions: 81156
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 1929
Number of HSP's that attempted gapping in prelim test: 67954
Number of HSP's gapped (non-prelim): 11073
length of query: 868
length of database: 191,569,459
effective HSP length: 126
effective length of query: 742
effective length of database: 123,577,843
effective search space: 91694759506
effective search space used: 91694759506
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)