Query 002904
Match_columns 868
No_of_seqs 268 out of 579
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a31_A Protein (topoisomerase 100.0 4E-168 1E-172 1401.2 33.0 477 377-858 19-506 (591)
2 2b9s_A Topoisomerase I-like pr 100.0 2E-161 5E-166 1315.6 38.7 425 384-812 1-432 (432)
3 1ois_A DNA topoisomerase I; DN 100.0 2.1E-95 7E-100 735.5 18.3 215 398-615 1-223 (223)
4 3m4a_A Putative type I topoiso 100.0 5.7E-80 2E-84 661.2 13.6 267 537-823 8-297 (346)
5 2h7g_X DNA topoisomerase 1; ty 100.0 3.1E-76 1.1E-80 626.7 13.2 260 542-817 4-273 (314)
6 1vcc_A DNA topoisomerase I; DN 97.4 4E-05 1.4E-09 66.6 1.9 63 546-616 2-76 (77)
7 4a8e_A XER A, probable tyrosin 95.5 0.04 1.4E-06 54.4 8.9 120 659-811 122-254 (292)
8 1a0p_A Site-specific recombina 94.6 0.052 1.8E-06 53.2 6.7 103 659-777 133-254 (290)
9 1z1b_A Integrase; protein-DNA 94.2 0.062 2.1E-06 55.0 6.5 102 659-777 199-319 (356)
10 1ae9_A Lambda integrase; DNA r 94.1 0.079 2.7E-06 49.1 6.4 100 659-777 23-143 (179)
11 3nkh_A Integrase; alpha-fold, 93.6 0.2 6.9E-06 48.8 8.5 121 659-810 57-214 (244)
12 1xo0_A Recombinase CRE; CRE re 92.9 0.22 7.4E-06 49.5 7.7 122 660-810 142-297 (324)
13 1z19_A Integrase; protein-DNA 92.3 0.2 7E-06 49.0 6.4 99 659-776 126-245 (283)
14 1aih_A HP1 integrase; DNA inte 87.7 0.88 3E-05 42.1 6.3 96 657-776 25-124 (170)
15 2a3v_A Site-specific recombina 86.5 0.78 2.7E-05 46.5 5.7 103 660-777 123-279 (320)
16 2cto_A Novel protein; high mob 38.1 13 0.00046 33.3 1.9 56 462-524 21-76 (93)
17 3mq7_A Bone marrow stromal ant 30.9 33 0.0011 32.6 3.3 31 819-849 71-101 (121)
18 3mq9_A Bone marrow stromal ant 27.1 29 0.001 37.9 2.7 106 725-846 357-463 (471)
19 1avy_A Fibritin, gpwac M; bact 23.4 1.7E+02 0.0059 25.7 6.2 45 815-860 11-56 (74)
No 1
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=100.00 E-value=4.3e-168 Score=1401.19 Aligned_cols=477 Identities=50% Similarity=0.822 Sum_probs=393.7
Q ss_pred hhhhhcccCcccccccCCCCCCcccccceeeeccccCCCCCC--CCcceEEEcCEeccCChhhHHHHHHHHHhcCCCCCc
Q 002904 377 TKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYL--PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQ 454 (868)
Q Consensus 377 ~k~~~~~~~~~kww~~~~~~~~g~~kW~tLeHnGv~Fpp~Y~--P~~V~~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~ 454 (868)
.++++++++.|+||+++. .++|+ ||+|||||||+|||||+ ||||+|||||+||+|||+|||||||||+||+|+|++
T Consensus 19 ~~~~~~~~~~~~wwe~~~-~~~~~-kW~tLeHnG~~Fpp~YeplP~~V~~~Ydg~pv~L~~~~EEvAtf~a~ml~t~~~~ 96 (591)
T 1a31_A 19 KKPKKEEEQKWKWWEEER-YPEGI-KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTT 96 (591)
T ss_dssp -----------------------C-CCSCEEECCCBCCCCCCCCCTTCCCEETTEECCCCHHHHHHHHHHHTTTTSGGGG
T ss_pred cccccchhhhhhcccccC-CCCCc-ceeEeeecceecCCcccCCCCCCceeECCEeccCCHHHHHHHHHHHHhcCCcccc
Confidence 345667788999999644 67888 99999999999999999 799999999999999999999999999999999999
Q ss_pred hhhHHhhhHHHHHHHhCc--CCCcccCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCeEEEcCceeee
Q 002904 455 KPKFRENFWNDWRKLLGK--NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKV 532 (868)
Q Consensus 455 ~~~F~~NFf~d~~~~l~~--~~~I~~~~kcDF~~i~~~~~~~ke~kk~~s~eEKk~~K~e~~~~~~~yg~~~vDg~~ekv 532 (868)
+++||+|||+||+++|++ ++.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+|||++|+|
T Consensus 97 ~~~F~~NFf~df~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~s~eEK~~~k~~~~~~~~~y~~~~~DG~~ekv 176 (591)
T 1a31_A 97 KEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERI 176 (591)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHCCCGGGEECHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHSEEEETTEEEEB
T ss_pred cHHHHHHHHHHHHHHhhhcCCcccCchhhCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCEEEECCeEEec
Confidence 999999999999999964 589999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccCCCCCCCCCccccccCCChhHHhccCCCCCCCCCCCCCCcceeecCCCCcEEEEeecCCCCceeeeee
Q 002904 533 GNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVF 612 (868)
Q Consensus 533 gNfrvEpPGLfRGRGfhpk~GklK~RI~PdditInrik~l~IPP~P~~GhaWkeV~hD~~vhwlAtw~D~igrkQyKYvy 612 (868)
|||||||||||||||+||+||+||+||+|+||||||+++++||+ |||||+|++|+||++|+|||+|.|.++++ .||+|
T Consensus 177 gnfriEPPgLFrGRG~HPk~G~lK~RV~pedvtiNi~k~a~iP~-pp~GhaWkdV~hd~tvtWia~w~~hIqGR-kQY~Y 254 (591)
T 1a31_A 177 ANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPS-PPPGHKWKEVRHDNKVTWLVSWTENIQGS-IKYIM 254 (591)
T ss_dssp SCCBCCCSEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCC-CSTTCCCSEEECCTTSCCSEEEECTTTCC-EEEEC
T ss_pred CCcccCCCccccCCCCCCCCCccccccChhhhhhhhccCCCCCc-CCCCCCcceeccCCceEEEEeChHHhcCC-eeEEE
Confidence 99999999999999999999999999999999999999999999 88999999999999999999999999876 89999
Q ss_pred ccCCchhhcCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhcccccCCCCCccC-CCceeeccCC
Q 002904 613 LAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLK 691 (868)
Q Consensus 613 l~ahs~wk~~rD~~Kyerar~Lk~~Lp~IR~~y~kDLksk~~~~RqlAvAlyLIDklALRvGNEKy~de-adTvG~cTLR 691 (868)
++++|+|++++|+.||++|++|+.+||+||++|++||++++|++||+||||||||++|||||||+|+++ |+||||||||
T Consensus 255 h~~~s~wk~~rD~~Kfe~ar~l~~~Lp~IR~~~~~dL~s~~~r~rqlAval~LID~~alRvGnekya~e~ndTvGl~TLR 334 (591)
T 1a31_A 255 LNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLR 334 (591)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCCCCCCCCCTTTSCCCCCGGGCB
T ss_pred ecCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhhhcCCcccccccCCCeeeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCceEEcC-----CCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcCCCCCCcccccCChhHHHHHHHhhCCCCccee
Q 002904 692 VGNVECIP-----PNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKV 766 (868)
Q Consensus 692 ~eHV~l~~-----~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~PGd~LFd~L~ss~LN~yLkelM~glTAKd 766 (868)
++||+|++ +++|+|+|+|||||+|+++|.||++||++|+.|++++.||++||+.|++++||+||+++|+||||||
T Consensus 335 ~eHV~l~~~~~g~~~~V~FdF~GKdgir~~~~V~vD~~v~k~L~~f~~~K~Pg~~LF~~l~s~~lN~yLkelmgglTAKd 414 (591)
T 1a31_A 335 VEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKV 414 (591)
T ss_dssp GGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTTTCCTTSBTTTTCCHHHHHHHHHHHSTTCCHHH
T ss_pred ccceEEeccccCCCCeEEEEEecCCceEEEEEEccCHHHHHHHHHHHhCCCCchHhhccCCHHHHHHHHHHHcCCCceee
Confidence 99999995 3899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002904 767 FRTYNASITLDGMLNKGTGDG-DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRA 845 (868)
Q Consensus 767 FRTynASvta~~~L~~~~~~~-s~~eK~~~yn~Anr~VAilCNHqR~V~K~~~~sm~kl~~ki~~lk~q~~~~~~~l~~~ 845 (868)
|||||||+||+++|.+++..+ ++++++++||+|||+|||||||||+|||+|+.||++|+++|+++++|+.+|+.+|+++
T Consensus 415 FRTwnASvta~~~L~~~~~~~~s~~ek~~~yn~Anr~VAiLCNHqR~vpK~~~~~m~kl~~ki~~~~~~~~~~~~~l~~~ 494 (591)
T 1a31_A 415 FRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA 494 (591)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------------------------------------
T ss_pred eccCchHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988777 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCc
Q 002904 846 KKGKPPLMKDSDG 858 (868)
Q Consensus 846 k~~~~~~~~~~~~ 858 (868)
+++++.. .+.++
T Consensus 495 ~~~~~~~-~~~~~ 506 (591)
T 1a31_A 495 KADAKVM-KDAKT 506 (591)
T ss_dssp -------------
T ss_pred hhccccc-ccccc
Confidence 9988765 44443
No 2
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=100.00 E-value=1.6e-161 Score=1315.61 Aligned_cols=425 Identities=53% Similarity=0.917 Sum_probs=411.3
Q ss_pred cCcccccccCCCCC----CcccccceeeeccccCCCCCCCCcceEEEcCEeccCChhhHHHHHHHHHhcCCCCCchhhHH
Q 002904 384 SQYSKSTKMLPGSG----DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFR 459 (868)
Q Consensus 384 ~~~~kww~~~~~~~----~g~~kW~tLeHnGv~Fpp~Y~P~~V~~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~~~~F~ 459 (868)
++.|+||+++. .+ +|+ ||+|||||||+|||||+||||+|+|||+||+|||+|||||||||+||+|+|+++++||
T Consensus 1 ~~~~~ww~~~~-~~~~~~~~~-kW~tL~HnG~~Fpp~y~p~~v~~~ydg~~v~l~~~~EEva~f~a~~l~~~~~~~~~F~ 78 (432)
T 2b9s_A 1 EEDLNWWEQEN-LRIAMKGER-RWETLAHNGVLFPPEYEPHGIPIFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVFR 78 (432)
T ss_dssp --CCCTTSCSS-CCCCCTTSC-CCSCEECCCCBCCCCCCCCCCCEEETTEEECCCHHHHHHHHHHHTTTTSGGGGCHHHH
T ss_pred CcccccccccC-cccccCCCc-ceeEeeecccccCCCcCCCCceeeECCEeccCCHHHHHHHHHHHHhcCCccccchHHH
Confidence 45799999754 34 777 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHh-CcCCCcccCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCeEEEcCceeeecccccC
Q 002904 460 ENFWNDWRKLL-GKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVE 538 (868)
Q Consensus 460 ~NFf~d~~~~l-~~~~~I~~~~kcDF~~i~~~~~~~ke~kk~~s~eEKk~~K~e~~~~~~~yg~~~vDg~~ekvgNfrvE 538 (868)
+|||+||+++| ++++.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+|||++|+|||||||
T Consensus 79 ~NFf~d~~~~l~~~~~~i~~~~~cdF~~i~~~~~~~~e~kk~~~~eek~~~k~~~~~~~~~y~~~~~Dg~~ekvgnf~~e 158 (432)
T 2b9s_A 79 RNFFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVE 158 (432)
T ss_dssp HHHHHHHHHHHTTSCCCCCCGGGEECHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHGGGSEEEETTEEEEBSCCBCC
T ss_pred HHHHHHHHHHhccCCcccCchhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCEEEECCeEEecCCcccC
Confidence 99999999999 77899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCccccccCCChhHHhccCCCCCCCCCCCCCCcceeecCCCCcEEEEeecCCCCceeeeeeccCCch
Q 002904 539 PPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 618 (868)
Q Consensus 539 pPGLfRGRGfhpk~GklK~RI~PdditInrik~l~IPP~P~~GhaWkeV~hD~~vhwlAtw~D~igrkQyKYvyl~ahs~ 618 (868)
|||||||||+||+||+||+||+|+||||||+++++||+ |||||+|++|+||++|+|||+|.|.++++ +||+|++++|.
T Consensus 159 pPglfrgRG~hpk~G~lK~RV~pedv~iNi~k~a~iP~-p~~ghaWkdV~hd~~vtWia~w~~~IqGr-~qYvy~~~~s~ 236 (432)
T 2b9s_A 159 PPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVPV-PPAGHKWAAVQHDHTVTWLAMWRDSVAGN-MKYVMLAPSSS 236 (432)
T ss_dssp CCEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCC-CCTTCCCSEEECCTTCCCSEEEECTTTCC-EEEECBCTTSH
T ss_pred CCccccCCCCCCCCCccccccChhhhhhhhccCCCCCc-CCCCCCcceeccCCceEEEeeChHHhcCC-eeEEEecCcHH
Confidence 99999999999999999999999999999999999999 88999999999999999999999999876 89999999999
Q ss_pred hhcCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEc
Q 002904 619 LKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECI 698 (868)
Q Consensus 619 wk~~rD~~Kyerar~Lk~~Lp~IR~~y~kDLksk~~~~RqlAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~ 698 (868)
|+++||+.||++|++|+.+||+||++|++||+++++++||+||||||||.++||||||+|+++|+||||||||++||+|+
T Consensus 237 w~~~rd~~Kfer~~~f~~~Lp~IR~~~~~dL~~~~~r~rqlAvav~LiD~~alRvGnekYa~endTvGl~TLR~eHV~l~ 316 (432)
T 2b9s_A 237 VKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLM 316 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEEC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcccCCccccccCCCEeecccccccEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcCCCCCCcccccCChhHHHHHHHhhCCCCcceeeccccchHHHHH
Q 002904 699 PPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDG 778 (868)
Q Consensus 699 ~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~PGd~LFd~L~ss~LN~yLkelM~glTAKdFRTynASvta~~ 778 (868)
++++|+|+|+|||||+|+++|+||++||++|+.|+++|.||++||++|++++||+||+++|+|||||||||||||+||++
T Consensus 317 ~~~~V~FdF~GKdgir~~~~V~vD~~l~k~L~~~~~~K~Pg~~LF~~l~s~~lN~yL~elmgg~TAKdFRTw~aSvta~~ 396 (432)
T 2b9s_A 317 PDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDR 396 (432)
T ss_dssp TTSEEEEEEECGGGCEEEEEEECCHHHHHHHHHHHTTCCTTSBTTTTCCHHHHHHHHTTTSTTCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecCCceEEEEEEecCHHHHHHHHHHHhCCCChhHhcccCCHHHHHHHHHHHhCCCceeeeccCchHHHHHH
Confidence 55999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHhcCC--CCCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 002904 779 MLNKGT--GDGDVAVKIDVYQRANKEVAIICNHQRT 812 (868)
Q Consensus 779 ~L~~~~--~~~s~~eK~~~yn~Anr~VAilCNHqR~ 812 (868)
+|.+++ ...++++|+.+||+|||+|||||||||+
T Consensus 397 ~L~~~~~~~~~t~~~K~~~yn~Anr~VAilCnHqr~ 432 (432)
T 2b9s_A 397 WFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKS 432 (432)
T ss_dssp HHHHCC----CCTTHHHHHHHHHHHHHHHHHTCEEC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999987 3459999999999999999999999996
No 3
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=100.00 E-value=2.1e-95 Score=735.51 Aligned_cols=215 Identities=52% Similarity=0.984 Sum_probs=206.5
Q ss_pred CcccccceeeeccccCCCCCC--CCcceEEEcCEeccCChhhHHHHHHHHHhcCCCCCchhhHHhhhHHHHHHHhCc---
Q 002904 398 DGQKKWTTLVHNGVIFPPPYL--PHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK--- 472 (868)
Q Consensus 398 ~g~~kW~tLeHnGv~Fpp~Y~--P~~V~~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~~~~F~~NFf~d~~~~l~~--- 472 (868)
+|+ ||+|||||||+|||+|+ ||||+|+|||+||+|||+|||||||||+||+|+|+++++||+|||+||+++|++
T Consensus 1 ~~~-KW~tLeHnGv~FpP~YeplP~~Vk~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~~~~F~kNFf~Df~~~l~~~~~ 79 (223)
T 1ois_A 1 DTI-KWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGG 79 (223)
T ss_dssp CCC-CCSCEECCCCBCCCCCCCCCTTCCEEETTEEECCCHHHHHHHHHHHHTTTSSGGGCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCc-ceeEeeecceecCCccccCCCCCceeECCEECcCCHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhhccc
Confidence 466 99999999999999999 799999999999999999999999999999999999999999999999999973
Q ss_pred ---CCCcccCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCeEEEcCceeeecccccCCCccccCCCCC
Q 002904 473 ---NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 549 (868)
Q Consensus 473 ---~~~I~~~~kcDF~~i~~~~~~~ke~kk~~s~eEKk~~K~e~~~~~~~yg~~~vDg~~ekvgNfrvEpPGLfRGRGfh 549 (868)
.+.|++|++|||++||+||++++|+||+||+|||+++|+++++++++||||+|||++||||||||||||||||||.|
T Consensus 80 ~~~~~~I~~~~kcDFs~i~~~~~~~~e~kk~~skEEKk~~Keek~~~~~~y~~~~vDG~kekVGNFriEPPgLFrGRG~H 159 (223)
T 1ois_A 80 PLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAH 159 (223)
T ss_dssp CTTCCCCCCGGGEECHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHEEEETTEEEEEECCBCCCCEECCCCTTC
T ss_pred cccCcccCchhhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCEEEECCEEEeeCCcccCCCccccCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCChhHHhccCCCCCCCCCCCCCCcceeecCCCCcEEEEeecCCCCceeeeeeccC
Q 002904 550 PKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAA 615 (868)
Q Consensus 550 pk~GklK~RI~PdditInrik~l~IPP~P~~GhaWkeV~hD~~vhwlAtw~D~igrkQyKYvyl~a 615 (868)
|+||+||+||+|+||||||+++++||+ |||||.|++|+||++|||||+|+|+|++. +|||||+|
T Consensus 160 PK~G~lK~RV~PeDVtIN~gkda~vP~-pp~Gh~WkeV~HDntvtWLA~W~enI~~~-~KYV~Laa 223 (223)
T 1ois_A 160 PKTGKLKRRVNPEDIVLNLSKDAPVPP-APEGHKWGEIRHDNTVQWLAMWRENIFNS-FKYVRLAA 223 (223)
T ss_dssp TTTTCEECCCCGGGCEEECCSSSCCCC-CSTTCCCSEEECCTTCCCSEEEECTTTCC-EEEEEECC
T ss_pred CCccccccccCHhHeEEecCCCCCCCc-cCCCCCcceeecCCCceEEEEeeeccCCc-eeEEEecC
Confidence 999999999999999999999999999 56999999999999999999999999985 99999986
No 4
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=100.00 E-value=5.7e-80 Score=661.16 Aligned_cols=267 Identities=19% Similarity=0.248 Sum_probs=230.8
Q ss_pred cCCCcccc---CC-CCCC--CCCc-cccccCCChhHHhccCCCCCCCCCCCCCCcceee--cCCCCcEEEEeecCCCCce
Q 002904 537 VEPPGLFR---GR-GEHP--KMGK-LKKRIQPSDITINIGKDVPIPECPIPGESWKEVK--HDNTVTWLAFWNDPINPKE 607 (868)
Q Consensus 537 vEpPGLfR---GR-Gfhp--k~Gk-lK~RI~PdditInrik~l~IPP~P~~GhaWkeV~--hD~~vhwlAtw~D~igrkQ 607 (868)
+..|||.| |+ ||+| .+|+ |+ |..+|+||+.|+||| ||+||| ++++||+||||+|++||+|
T Consensus 8 ~~~pgi~R~r~g~~gf~Y~~~~G~~i~-----d~~~~~Ri~~LaIPP------Aw~dVwI~p~~nghlQAtG~Da~GRkQ 76 (346)
T 3m4a_A 8 LAEEYLRREGHDPQKFRYVHPDGTPYT-----DADGLARIARLAVPP------AYQDVYVSPDAENELQAFGRDAAGRLQ 76 (346)
T ss_dssp HC----CC-----------------------------CHHHHHCCCT------TCEEEEECSSSSCSEEEEEECCC-CEE
T ss_pred CCCCCcEEeecCCCCeEEECCCCCEec-----CHHHHHHHHhcCCCC------CcceEEEeeCCCCceEEEEecCCCCcc
Confidence 46899999 99 9999 5786 55 889999999999999 999999 9999999999999999999
Q ss_pred eeeeeccCCchhhcCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHhcccccCCCCCccCCCcee
Q 002904 608 FKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDG-TRRQIAVATYLIDKLALRAGNEKDDDEADTVG 686 (868)
Q Consensus 608 yKYvyl~ahs~wk~~rD~~Kyerar~Lk~~Lp~IR~~y~kDLksk~~-~~RqlAvAlyLIDklALRvGNEKy~deadTvG 686 (868)
|+| ||.|++++|.+||+++++|+.+||+||++|.+||+++++ ++||+|+|+||||.++||||||+|+++|+|||
T Consensus 77 YrY-----H~~w~~~rd~~Kfer~~~f~~~Lp~IR~~v~~dL~~~~~~r~rvlA~av~LlD~~~lRvGne~Ya~en~T~G 151 (346)
T 3m4a_A 77 YRY-----HPDFVQAGALKKWQRLTRFAGALPTLKVATTADLRASGLPPRKVMALMTRLLHVARFRVGSDIYARQHKTYG 151 (346)
T ss_dssp EEE-----CGGGC---CCCHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC
T ss_pred ccc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhcccCCChhhhhhcCCcc
Confidence 999 999999999999999999999999999999999998888 89999999999999999999999999999999
Q ss_pred eccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcCCCCCCcccccCCh----------hHHHHHHH
Q 002904 687 CCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDT----------AKLNAHLK 756 (868)
Q Consensus 687 ~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~PGd~LFd~L~s----------s~LN~yLk 756 (868)
|||||++||+++ ++.|+|+|+|||||+|+++|+ |++||++|+.|+ +.||++||+|+|+ ++||+||+
T Consensus 152 ltTLr~~HV~~~-~~~v~f~F~GK~gi~~~~~v~-D~~l~~~l~~~~--~~pg~~LF~~~d~~g~~~~~v~s~~vN~yL~ 227 (346)
T 3m4a_A 152 LSTLRQRHVVVD-GNTVTFRFKGKHGVSQHKATS-DRTLAANMQKLL--DLPGPWLFQTVDAGGGERRRIHSTELNAYLR 227 (346)
T ss_dssp GGGCBGGGEEEE-TTEEEEEEECGGGCEEEEEEC-CHHHHHHHHHHH--TSCSSBSCEEECCCC-CEEECCHHHHHHHHH
T ss_pred cccccHhheeee-CCEEEEEEecCCCCEEEEEEC-cHHHHHHHHHHH--hCchhhhcceEcCCCCccccCCHHHHHHHHH
Confidence 999999999999 799999999999999999999 999999999999 6899999998764 88999999
Q ss_pred hhCCCCcceeeccccchHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcccccc---hHHHHHH
Q 002904 757 ELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKT---HSAQMSR 823 (868)
Q Consensus 757 elM~glTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn~Anr~VAilCNHqR~V~K~---~~~sm~k 823 (868)
++|+|||||||||||||++|+++|.+++...+..++.+.|+.||++||++||||++||++ |-.-++.
T Consensus 228 e~~g~~TAKdFRTw~aSv~a~~~L~~~~~~~~~~~~kk~i~~a~k~VA~~LgNTpaV~R~sYIhP~vi~~ 297 (346)
T 3m4a_A 228 EVIGPFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCVKFVADDLGNTPAVTRGSYICPVIFDR 297 (346)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHTSCHHHHHH
T ss_pred HHcCCCchhhccCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCCccchhhhccCHHHHHH
Confidence 999889999999999999999999998888899999999999999999999999999996 4444444
No 5
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=100.00 E-value=3.1e-76 Score=626.65 Aligned_cols=260 Identities=20% Similarity=0.259 Sum_probs=235.3
Q ss_pred cccCCCCCCCCCccccccCCChhHHhccCCCCCCCCCCCCCCcceee--cC----CCCcEEEEeecCCCCceeeeeeccC
Q 002904 542 LFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVK--HD----NTVTWLAFWNDPINPKEFKYVFLAA 615 (868)
Q Consensus 542 LfRGRGfhpk~GklK~RI~PdditInrik~l~IPP~P~~GhaWkeV~--hD----~~vhwlAtw~D~igrkQyKYvyl~a 615 (868)
++.-.|..+.++.++.||.|++++|+||+.|+||| ||++|| ++ +++||||+|+|++||+||+|
T Consensus 4 ~~~~~G~~~~d~~~~~rv~~~~~~~~ri~~l~IPP------Aw~dVwi~~~~~e~~~~~lqAtG~Da~GRkQY~Y----- 72 (314)
T 2h7g_X 4 LFYKDGKLFTDNNFLNPVSDNNPAYEVLQHVKIPT------HLTDVVVYGQTWEEALTRLIFVGSDSKGRRQYFY----- 72 (314)
T ss_dssp EEEETTEEESSTTSCSBCCTTCTHHHHHHHCCCCT------TCEEEEEESSCHHHHTTSEEEEEECTTCCEEEEE-----
T ss_pred eecCCCccccCccccccCCchhHHHHHHHhCCCCC------chheEEEecccccCCCCCeEEEeeccccCcceee-----
Confidence 44456777889999999999999999999999999 999999 43 58889999999999998888
Q ss_pred CchhhcCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHh-cccccCCCCCccCCCceeeccCCCC
Q 002904 616 SSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDG-TRRQIAVATYLIDK-LALRAGNEKDDDEADTVGCCTLKVG 693 (868)
Q Consensus 616 hs~wk~~rD~~Kyerar~Lk~~Lp~IR~~y~kDLksk~~-~~RqlAvAlyLIDk-lALRvGNEKy~deadTvG~cTLR~e 693 (868)
||.|+++||+.||+++++|+.+||+||++|++||+..++ +++|+| +++|||. ++||||||+|+++|+||||||||+|
T Consensus 73 h~~w~~~rd~~Kfe~~~~~~~~Lp~IR~~v~~dL~~~~~~r~~~aa-v~~lld~~~alRvGnekya~en~T~GltTLr~e 151 (314)
T 2h7g_X 73 GKMHVQNRNAKRDRIFVRVYNVMKRINSFINKNIKKSSTDSNYQLA-VFMLMETMFFIRFGKMKYLKENETVGLLTLKNK 151 (314)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHH-HHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHH-HHHHHHhcCceecCChhhhhhcCCEeeeccchh
Confidence 999999999999999999999999999999999966555 777755 5555555 8999999999999999999999999
Q ss_pred ceEEcCCCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcCCCCCCcccccCChhHHHHHHHhhCCCCcceeeccccch
Q 002904 694 NVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNAS 773 (868)
Q Consensus 694 HV~l~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K~PGd~LFd~L~ss~LN~yLkelM~glTAKdFRTynAS 773 (868)
||+++ +++|+|+|+|||||+|+++|++|++||++|+.|++++.||++||+|+++++||+||+++ |||||||||||||
T Consensus 152 HV~l~-~~~v~fdF~GKdgi~~~~~v~dd~~l~k~l~~~~~~k~pg~~LF~~ld~~~vN~yL~e~--~~TAKdFRTw~aS 228 (314)
T 2h7g_X 152 HIEIS-PDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYESIKQF--GIRIKDLRTYGVN 228 (314)
T ss_dssp GEEEE-TTEEEEEEECGGGCEEEEEEETTSTTHHHHHHHCCTTCTTSBSSTTCCHHHHHHHHGGG--TSCHHHHHHHHHH
T ss_pred heEEE-CCEEEEEEeCCCCcEEEEEEeccHHHHHHHHHHHhCCCChHHhhcccChHHHHHHHHHC--CCeeeeecCcchH
Confidence 99999 69999999999999999999977999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHh-cCCC-CCCHHHHHHHHHHHHHHHHHHcCCCcccccch
Q 002904 774 ITLDGMLN-KGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTH 817 (868)
Q Consensus 774 vta~~~L~-~~~~-~~s~~eK~~~yn~Anr~VAilCNHqR~V~K~~ 817 (868)
+||+++|. ++.. ..+..+|+..|+.++ +||++|||||+|||+|
T Consensus 229 v~a~~~L~~~l~~~~~~~~~K~~i~~~~~-~VA~~lgnTpaV~R~~ 273 (314)
T 2h7g_X 229 YTFLYNFWTNVKSISPLPSPKKLIALTIK-QTAEVVGHTPSISKRA 273 (314)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHHHH-HHHHHHTCCTTTHHHH
T ss_pred HHHHHHHHHhccccCchHHHHHHHHHHHH-HHHHHhCCCCCCCccc
Confidence 99999994 2211 125577888888888 9999999999999973
No 6
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=97.43 E-value=4e-05 Score=66.63 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=53.4
Q ss_pred CCCCCCCCc------cccccCCChhHHhccCCCCCCCCCCCCCCcceee------cCCCCcEEEEeecCCCCceeeeeec
Q 002904 546 RGEHPKMGK------LKKRIQPSDITINIGKDVPIPECPIPGESWKEVK------HDNTVTWLAFWNDPINPKEFKYVFL 613 (868)
Q Consensus 546 RGfhpk~Gk------lK~RI~PdditInrik~l~IPP~P~~GhaWkeV~------hD~~vhwlAtw~D~igrkQyKYvyl 613 (868)
|+++|++|+ +++||.-|..+.++++...||+ ..++|. ......++..|.|+.||+ ||+|.
T Consensus 2 ~~l~y~dgkLf~D~~~t~~V~~~Np~yeil~~~kiP~------hL~dV~vyeqt~eea~~~lIfvG~DSKgrk--QYFYG 73 (77)
T 1vcc_A 2 RALFYKDGKLFTDNNFLNPVSDDNPAYEVLQHVKIPT------HLTDVVVYEQTWEEALTRLIFVGSDSKGRR--QYFYG 73 (77)
T ss_dssp CEEEEETTEEESSTTSCSBCCTTCTHHHHHHHCCCCT------TCEEEEEECCCHHHHTTSEEEEEECTTSCE--EEEEC
T ss_pred cceEecCCeEEechhhccccCCCChHHHHHHhccCCc------ccceEEEeeecHHHhhCceEEEeecCCCce--eeeec
Confidence 457777776 7899999999999999999999 899998 566778999999999999 66665
Q ss_pred cCC
Q 002904 614 AAS 616 (868)
Q Consensus 614 ~ah 616 (868)
..|
T Consensus 74 k~h 76 (77)
T 1vcc_A 74 KMH 76 (77)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 7
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=95.51 E-value=0.04 Score=54.39 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcC-CC
Q 002904 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG-KK 737 (868)
Q Consensus 659 lAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~-K~ 737 (868)
..+++.|+-.+.||+|- +|.|+.++|.+. ++.|.+. .+|.+..+ .|.+.+.+...|..+... ..
T Consensus 122 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~-~~~i~i~-~~K~~~~r--~vpl~~~~~~~l~~~~~~~~~ 186 (292)
T 4a8e_A 122 DRLILLLLYGAGLRVSE-----------LCNLRVEDVNFE-YGVIVVR-GGKGGKDR--VVPISESLLSEIKRYLESRND 186 (292)
T ss_dssp HHHHHHHHHHSCCCHHH-----------HHHCBGGGEETT-TTEEEEC-CCSSSCCE--EEECCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhCCCHHH-----------HHhCcHHhhhcc-CCEEEEE-ecCCCcee--EEEcCHHHHHHHHHHHHHhCc
Confidence 35667777789999986 899999999988 5666554 47776655 577789999999998755 45
Q ss_pred CCCccc--------ccCChhHHHHHHHhhC--CC--CcceeeccccchHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 002904 738 QNDDLF--------DKLDTAKLNAHLKELM--PG--LTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAI 805 (868)
Q Consensus 738 PGd~LF--------d~L~ss~LN~yLkelM--~g--lTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn~Anr~VAi 805 (868)
+++.|| ..++...++.+|+.++ .| +|..+||-.-||.++. .+. + ...|+.
T Consensus 187 ~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~H~lRht~at~l~~-----~g~--~-----------~~~i~~ 248 (292)
T 4a8e_A 187 DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLE-----RGI--D-----------IRIIQE 248 (292)
T ss_dssp CCSBSCEECCSSCSEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----TTC--C-----------HHHHHH
T ss_pred CCCcEEeecCCCCCCCCCHHHHHHHHHHHHHHcCCCcCcccchhHHHHHHHH-----cCC--C-----------HHHHHH
Confidence 778899 5688899999999987 34 6777777666665433 221 1 346788
Q ss_pred HcCCCc
Q 002904 806 ICNHQR 811 (868)
Q Consensus 806 lCNHqR 811 (868)
+++|..
T Consensus 249 ~lGH~~ 254 (292)
T 4a8e_A 249 LLGHSN 254 (292)
T ss_dssp HHCC--
T ss_pred HcCCCC
Confidence 889964
No 8
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=94.62 E-value=0.052 Score=53.23 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcC---
Q 002904 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG--- 735 (868)
Q Consensus 659 lAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~--- 735 (868)
..+++.|+-.+.||+|- +|.|+.++|.+. ++.|.+. ||.+..+ .|.+.+.+...|..+...
T Consensus 133 ~~~~~~l~~~tGlR~~E-----------i~~L~~~di~~~-~~~i~i~--~K~~~~r--~vpl~~~~~~~l~~~~~~~~~ 196 (290)
T 1a0p_A 133 DKAMLEVLYATGLRVSE-----------LVGLTMSDISLR-QGVVRVI--GKGNKER--LVPLGEEAVYWLETYLEHGRP 196 (290)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HTTCBGGGEETT-TTEEEEE--CSSSCEE--EEECCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCCCHHH-----------HHcCCHHHcCcc-cCeEEEe--ccCCCce--EEECCHHHHHHHHHHHHhccc
Confidence 34556666778999985 899999999988 5676665 8888655 667789999999988753
Q ss_pred ----CCCCCcccc-----cCChhHHHHHHHhhC-----C--CCcceeeccccchHHHH
Q 002904 736 ----KKQNDDLFD-----KLDTAKLNAHLKELM-----P--GLTAKVFRTYNASITLD 777 (868)
Q Consensus 736 ----K~PGd~LFd-----~L~ss~LN~yLkelM-----~--glTAKdFRTynASvta~ 777 (868)
..+++.||- .++...++.+++.++ + ++|..+||-.-||.++.
T Consensus 197 ~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~h~lRht~at~l~~ 254 (290)
T 1a0p_A 197 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLN 254 (290)
T ss_dssp HHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred cccccCCCCceeeCCCCCCCCHHHHHHHHHHHHHHcCCCcCCCCchhhhhHHHHHHHH
Confidence 256788994 478889999999886 2 37778888766665544
No 9
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=94.22 E-value=0.062 Score=55.01 Aligned_cols=102 Identities=11% Similarity=0.184 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEe-----eChHHHHHHHhhh
Q 002904 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVE-----VELPVYKAIGQFQ 733 (868)
Q Consensus 659 lAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~-----VD~~V~knLk~f~ 733 (868)
...++.|+=.+.||+|- +|.|+.++|. ++.|.+. .+|.+..+...+. +.+.+...|+.+.
T Consensus 199 ~~~~~~l~~~tG~R~~E-----------~~~L~~~did---~~~i~i~-~~K~~~~r~vpl~~~~~~l~~~l~~~l~~~~ 263 (356)
T 1z1b_A 199 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV---DGYLYVE-QSKTGVKIAIPTALHIDALGISMKETLDKCK 263 (356)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HTTCBGGGEE---TTEEEEE-CTTTCCEEEEETTCEETTTTEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHH-----------HhcCcHHHcc---CCeEEEE-ecCCCCceecccchhhhhhhHHHHHHHHHHH
Confidence 44567777788999986 8999999995 4566654 4788765533322 1245677777765
Q ss_pred cCCCCCCcccc-----cCChhHHHHHHHhhC---------CCCcceeeccccchHHHH
Q 002904 734 TGKKQNDDLFD-----KLDTAKLNAHLKELM---------PGLTAKVFRTYNASITLD 777 (868)
Q Consensus 734 k~K~PGd~LFd-----~L~ss~LN~yLkelM---------~glTAKdFRTynASvta~ 777 (868)
. ..+++.||. .++...++.+++.++ +.+|..+|||| ||.++.
T Consensus 264 ~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~H~lR~~-at~l~~ 319 (356)
T 1z1b_A 264 E-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYE 319 (356)
T ss_dssp H-HTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHH-HHHHHH
T ss_pred h-cCCCCceeeCCCCCcCChhHHHHHHHHHHHhcCCCcCCCCCChhhHHHH-HHHHHH
Confidence 3 245677884 578889999998885 25799999986 665443
No 10
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=94.09 E-value=0.079 Score=49.09 Aligned_cols=100 Identities=12% Similarity=0.211 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeCh-------HHHHHHHh
Q 002904 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEL-------PVYKAIGQ 731 (868)
Q Consensus 659 lAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~VD~-------~V~knLk~ 731 (868)
..+++.|+-.+.+|+|- +|.|+.++|. ++.|.+. .+|.+..+ .|.+.+ .+...|+.
T Consensus 23 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~---~~~i~i~-~~K~~~~r--~vpl~~~~~~l~~~l~~~l~~ 85 (179)
T 1ae9_A 23 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV---DGYLYVE-QSKTGVKI--AIPTALHIDALGISMKETLDK 85 (179)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HHHCBGGGEE---TTEEEEE-CTTTCCEE--EEETTCEEGGGTEEHHHHHHH
T ss_pred HHHHHHHHHHhCchHHH-----------HhcCcHHHee---CCeEEEE-EcCCCcee--eeeCcHHHHHHHHHHHHHHHH
Confidence 45667777788999986 8999999997 4566663 48888755 455555 45666666
Q ss_pred hhcCCCCCCcccc-----cCChhHHHHHHHhhC-----C----CCcceeeccccchHHHH
Q 002904 732 FQTGKKQNDDLFD-----KLDTAKLNAHLKELM-----P----GLTAKVFRTYNASITLD 777 (868)
Q Consensus 732 f~k~K~PGd~LFd-----~L~ss~LN~yLkelM-----~----glTAKdFRTynASvta~ 777 (868)
+.. ..+++.||. .++...++..++.++ + ++|..+|||| |+..+.
T Consensus 86 ~~~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~H~lR~~-at~l~~ 143 (179)
T 1ae9_A 86 CKE-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYE 143 (179)
T ss_dssp HHH-HTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHH-HHHHHH
T ss_pred hcc-cCCCCeEEEcCCCCcCChhHHHHHHHHHHHHcCCCCCCCCCCcchHHHH-HHHHHH
Confidence 543 245778994 478888999998885 2 6899999986 565443
No 11
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=93.58 E-value=0.2 Score=48.80 Aligned_cols=121 Identities=13% Similarity=0.156 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEee----------------CCCCeEEEEEEeeC
Q 002904 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFL----------------GKDSIQYVNTVEVE 722 (868)
Q Consensus 659 lAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFl----------------GKdgir~~~tV~VD 722 (868)
..+++.|+-.+.||+|- +|.|+.++|.+. ++.|.+.-. .|.+- -...|.+.
T Consensus 57 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~Kt~~-~~r~vpl~ 123 (244)
T 3nkh_A 57 VALMTEFQALNGMRIGE-----------MLAIQNEDIDFD-NKSLNINGTIHWFHDESGGFGVKDTTKTES-SYRTIGLS 123 (244)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HHTCBGGGEETT-TTEEEECCEEEEEECTTSCEEEEECC---C-CCEEEECC
T ss_pred HHHHHHHHHHhCchHHH-----------HhcCcHHHcCcc-CCeEEEeeEeeeccCCCccccccCCCCCCC-CceeEecC
Confidence 45667777789999985 899999999987 566666431 11110 03468889
Q ss_pred hHHHHHHHhhhcCC----------CCCCcccc-----cCChhHHHHHHHhhC-----C-CCcceeeccccchHHHHHHHh
Q 002904 723 LPVYKAIGQFQTGK----------KQNDDLFD-----KLDTAKLNAHLKELM-----P-GLTAKVFRTYNASITLDGMLN 781 (868)
Q Consensus 723 ~~V~knLk~f~k~K----------~PGd~LFd-----~L~ss~LN~yLkelM-----~-glTAKdFRTynASvta~~~L~ 781 (868)
+.+...|..+.... .+++.||- .++...++.+++.++ + ++|..+||-.-||.++.
T Consensus 124 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~H~lRht~at~l~~---- 199 (244)
T 3nkh_A 124 SRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQ---- 199 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCSHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCeEEECCCCCCCchhhHHHHHHHHHHHcCCCCCceeecchHHHHHHHHH----
Confidence 99999999886321 57788995 588999999999986 2 56777787666664433
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q 002904 782 KGTGDGDVAVKIDVYQRANKEVAIICNHQ 810 (868)
Q Consensus 782 ~~~~~~s~~eK~~~yn~Anr~VAilCNHq 810 (868)
.+. + ...|+.+++|.
T Consensus 200 -~g~--~-----------~~~i~~~lGH~ 214 (244)
T 3nkh_A 200 -QGV--S-----------LKAIMDRVGHS 214 (244)
T ss_dssp -TTC--C-----------HHHHHHHHCST
T ss_pred -cCC--C-----------HHHHHHHhCCC
Confidence 211 1 34678888996
No 12
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=92.89 E-value=0.22 Score=49.52 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=82.2
Q ss_pred HHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeC-CCCeE-EEEEEeeChHHHHHHHhhhcC--
Q 002904 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLG-KDSIQ-YVNTVEVELPVYKAIGQFQTG-- 735 (868)
Q Consensus 660 AvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlG-Kdgir-~~~tV~VD~~V~knLk~f~k~-- 735 (868)
.+++.|+-.+.||+|- +|.|+.+||.+..++.|.+...| |.... -...|.+.+.+...|..+...
T Consensus 142 ~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~~~~~i~i~~k~~K~~~~~~~r~vpl~~~~~~~L~~~~~~~~ 210 (324)
T 1xo0_A 142 LAFLGIAYNTLLKIAE-----------IARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSG 210 (324)
T ss_dssp HHHHHHHHHHCCCHHH-----------HHHCBGGGEEEEETTEEEEEECCCCSSSSCSCEEEEECHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhHHH-----------HHhccHHHeeeccCCeEEEEeecCCcCcCCCceEEecCccHHHHHHHHHHhcC
Confidence 3445666678999986 89999999999843677765432 22211 013577889999999888743
Q ss_pred --CCCCCcccc--------------cCChhHHHHHHHhhC-----C---------CCcceeeccccchHHHHHHHhcCCC
Q 002904 736 --KKQNDDLFD--------------KLDTAKLNAHLKELM-----P---------GLTAKVFRTYNASITLDGMLNKGTG 785 (868)
Q Consensus 736 --K~PGd~LFd--------------~L~ss~LN~yLkelM-----~---------glTAKdFRTynASvta~~~L~~~~~ 785 (868)
..+++.||- .++...++..++.++ + ++|..+||-..||.++.. +.
T Consensus 211 ~~~~~~~~lF~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~H~lRht~at~l~~~-----g~ 285 (324)
T 1xo0_A 211 VADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARA-----GV 285 (324)
T ss_dssp GGGSTTSBSSCEECTTSCEECCSSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCSSCCTTHHHHHHHHHHHHT-----TC
T ss_pred CccCCCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccccccccccccchhhHHHHHHHHHC-----CC
Confidence 246677992 577888999988875 2 577888886666654432 11
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC
Q 002904 786 DGDVAVKIDVYQRANKEVAIICNHQ 810 (868)
Q Consensus 786 ~~s~~eK~~~yn~Anr~VAilCNHq 810 (868)
+ ...|+.+++|.
T Consensus 286 --~-----------~~~i~~~lGH~ 297 (324)
T 1xo0_A 286 --S-----------IPEIMQAGGWT 297 (324)
T ss_dssp --C-----------HHHHHHHHTCS
T ss_pred --C-----------HHHHHHHcCCC
Confidence 2 23678888996
No 13
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=92.25 E-value=0.2 Score=48.96 Aligned_cols=99 Identities=12% Similarity=0.193 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChH-------HHHHHHh
Q 002904 659 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELP-------VYKAIGQ 731 (868)
Q Consensus 659 lAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~VD~~-------V~knLk~ 731 (868)
..+++.|+=.+.||+|- +|.|+.++|. ++.|.+. .+|.+..+. |.+.+. +...|..
T Consensus 126 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~---~~~i~i~-~~K~~~~r~--vpl~~~~~~l~~~l~~~l~~ 188 (283)
T 1z19_A 126 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV---DGYLYVE-QSKTGVKIA--IPTALHIDALGISMKETLDK 188 (283)
T ss_dssp HHHHHHHHHHSCCCHHH-----------HTTCBGGGEE---TTEEEEE-CTTTCCEEE--EETTCEETTTTEEHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHH-----------HhcCCHHHhc---CCeEEEe-ecCCCCcee--eecChhhhhhhHHHHHHHHH
Confidence 34566777789999986 8999999996 4566654 588877654 555543 4556665
Q ss_pred hhcCCCCCCcccc-----cCChhHHHHHHHhhC---------CCCcceeeccccchHHH
Q 002904 732 FQTGKKQNDDLFD-----KLDTAKLNAHLKELM---------PGLTAKVFRTYNASITL 776 (868)
Q Consensus 732 f~k~K~PGd~LFd-----~L~ss~LN~yLkelM---------~glTAKdFRTynASvta 776 (868)
+.. ..+++.||- .++...++.+++.++ +.+|..+|||| ||.++
T Consensus 189 ~~~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~H~lR~~-at~l~ 245 (283)
T 1z19_A 189 CKE-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLY 245 (283)
T ss_dssp HHH-HHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHHH-HHHHH
T ss_pred HHH-hCCCCceEeCCCCCcCChhhHHHHHHHHHHHcCCCccCCCCCcchHHHH-HHHHH
Confidence 542 235677884 578889999999875 25789999987 66543
No 14
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=87.69 E-value=0.88 Score=42.12 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcCC
Q 002904 657 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGK 736 (868)
Q Consensus 657 RqlAvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~K 736 (868)
+..++++.|+-.+.+|+|. +|.|+.++|. .+.|.+. .+|.+.. ..|.+.+.+...|+.+
T Consensus 25 ~~~~~~~~l~~~tG~R~~E-----------~~~L~~~di~---~~~i~~~-~~K~~~~--r~vpl~~~~~~~l~~~---- 83 (170)
T 1aih_A 25 PDLGLIVRICLATGARWSE-----------AETLTQSQVM---PYKITFT-NTKSKKN--RTVPISDELFDMLPKK---- 83 (170)
T ss_dssp TTHHHHHHHHHHHCCCHHH-----------HHTCBTTTEE---TTEEEEE-SSSSSCE--EEEECCHHHHHHSCCC----
T ss_pred hhHHHHHHHHHHhCCcHHH-----------HHhCCHHHcC---CCeEEee-cccCCCc--ceeeCCHHHHHHHHHH----
Confidence 4566777888889999986 8999999994 3566553 5788764 4677788888888766
Q ss_pred CCCCcccccCChhHHHHHHHhhC---C-CCcceeeccccchHHH
Q 002904 737 KQNDDLFDKLDTAKLNAHLKELM---P-GLTAKVFRTYNASITL 776 (868)
Q Consensus 737 ~PGd~LFd~L~ss~LN~yLkelM---~-glTAKdFRTynASvta 776 (868)
.+.||.. ....++.+++.+- + ++|..+||-.-||.++
T Consensus 84 --~~~lF~~-~~~~~~~~~~~~g~~~~~~~~~H~lRht~at~l~ 124 (170)
T 1aih_A 84 --RGRLFND-AYESFENAVLRAEIELPKGQLTHVLRHTFASHFM 124 (170)
T ss_dssp --SSBSSCC-CHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHH
T ss_pred --hhhccCc-cHHHHHHHHHHhccCCCCCCcchHhHHHHHHHHH
Confidence 2578875 4567888888874 2 6888888876666544
No 15
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=86.54 E-value=0.78 Score=46.49 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=71.1
Q ss_pred HHHHHHHHhcccccCCCCCccCCCceeeccCCCCceEEcCCCeEEEEeeCCCCeEEEEEEeeChHHHHHHHhhhcC----
Q 002904 660 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTG---- 735 (868)
Q Consensus 660 AvAlyLIDklALRvGNEKy~deadTvG~cTLR~eHV~l~~~~~V~FdFlGKdgir~~~tV~VD~~V~knLk~f~k~---- 735 (868)
.+++.|+-.+.||+|- +|.|+.++|.+. .+.|.+. .||.+..+ .|.+.+.+...|+.+.+.
T Consensus 123 ~~~~~l~~~tGlR~~E-----------l~~L~~~did~~-~~~i~i~-~~K~~k~R--~vpl~~~~~~~L~~~~~~~~~~ 187 (320)
T 2a3v_A 123 QLPIKLLYGSGLRLME-----------CMRLRVQDIDFD-YGAIRIW-QGKGGKNR--TVTLAKELYPHLKEQIALAKRY 187 (320)
T ss_dssp HHHHHHHHHSCCCHHH-----------HHTCBGGGEETT-TTEEEEE-EETTTEEE--EEECCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHH-----------HHcCcHHHCCCC-CCeEEEe-cCCCCCce--eeeCCHHHHHHHHHHHHHhhhh
Confidence 3455666779999987 999999999998 5677664 47877544 577788888888765310
Q ss_pred --------C-----CC---------------CCcccc----------------cCChhHHHHHHHhhC------CCCcce
Q 002904 736 --------K-----KQ---------------NDDLFD----------------KLDTAKLNAHLKELM------PGLTAK 765 (868)
Q Consensus 736 --------K-----~P---------------Gd~LFd----------------~L~ss~LN~yLkelM------~glTAK 765 (868)
. .| .+.||. .++...+|.+++.++ ..+|..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lF~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~agi~~~~~~H 267 (320)
T 2a3v_A 188 YDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCH 267 (320)
T ss_dssp HHHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEETTTTEEECCBCCHHHHHHHHHHHHHTTCCCSCCCHH
T ss_pred hcccccccccccccccchhhcccccccccccccceeeccccccCcccCccccccCCHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 0 01 145774 267788999999875 246777
Q ss_pred eeccccchHHHH
Q 002904 766 VFRTYNASITLD 777 (868)
Q Consensus 766 dFRTynASvta~ 777 (868)
+||--.||.++.
T Consensus 268 ~lRHT~At~l~~ 279 (320)
T 2a3v_A 268 TLRHSFATHLLE 279 (320)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 777766665443
No 16
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.12 E-value=13 Score=33.33 Aligned_cols=56 Identities=14% Similarity=-0.000 Sum_probs=40.3
Q ss_pred hHHHHHHHhCcCCCcccCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCeEE
Q 002904 462 FWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKNKQEEKYMWAI 524 (868)
Q Consensus 462 Ff~d~~~~l~~~~~I~~~~kcDF~~i~~~~~~~ke~kk~~s~eEKk~~K~e~~~~~~~yg~~~ 524 (868)
|.+++|..+... .+.|++|-.-+..--|.-++||.+||+.=.+..+++.+.|+--.
T Consensus 21 F~~e~R~~ik~e-------~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 21 FVQEKIPELRRR-------GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp HHHTTHHHHHHH-------TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 566666665432 46677776665445788899999999988888888888876543
No 17
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.92 E-value=33 Score=32.59 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002904 819 AQMSRLTEKIEDLKGVLKDLRVDLDRAKKGK 849 (868)
Q Consensus 819 ~sm~kl~~ki~~lk~q~~~~~~~l~~~k~~~ 849 (868)
.+++.|+..|..|..+|.++..++.+++++.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3477788888888888888888888877654
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.12 E-value=29 Score=37.85 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=52.2
Q ss_pred HHHHHHhhhcCCCCCCcccccCChhHHHHHHHhhCCCCcceeeccccchHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 002904 725 VYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVA 804 (868)
Q Consensus 725 V~knLk~f~k~K~PGd~LFd~L~ss~LN~yLkelM~glTAKdFRTynASvta~~~L~~~~~~~s~~eK~~~yn~Anr~VA 804 (868)
+...|..+..+...-++..+.+ ...+|+.|.++. +.....|....|+++|.+. ++. +-.+ +.-|
T Consensus 357 ~~~~~~~vl~G~~t~eeal~~~-~~~i~~~l~~~~-----~~~e~~~~~~~~~~~~~~~-------~~~--~~~~-~~~~ 420 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEALKDA-QTRITAARDGLR-----AVMEARNVTHLLQQELTEA-------QKG--FQDV-EAQA 420 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-------HHH--HHHH-HHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHhhH-----HHHHhhhHHHHHHHHHHHH-------hhh--HHHH-HHHh
Confidence 4445555554433223333322 344566666552 2334557777788888552 222 2222 3445
Q ss_pred HHcCCCccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002904 805 IICNHQRTV-SKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK 846 (868)
Q Consensus 805 ilCNHqR~V-~K~~~~sm~kl~~ki~~lk~q~~~~~~~l~~~k 846 (868)
..|||+-.. -.+++.-...-+.+|++|+.++.+|.++|+.+.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 421 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567775321 222333222233457777777776666666543
No 19
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.41 E-value=1.7e+02 Score=25.66 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCccc
Q 002904 815 KTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAK-KGKPPLMKDSDGKR 860 (868)
Q Consensus 815 K~~~~sm~kl~~ki~~lk~q~~~~~~~l~~~k-~~~~~~~~~~~~~~ 860 (868)
|+++.++..+...+..++..|.+|+.+.+.+. .|.+|. --+||++
T Consensus 11 k~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~-AP~DG~~ 56 (74)
T 1avy_A 11 KAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPE-APRDGQA 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-CCCSSCC
T ss_pred cccccchhhhheeeccccchhhhhhhhhHHHHhcCCCCC-CCCCCce
Confidence 57899999999999999999999999999887 666666 4467775
Done!