Query 002905
Match_columns 867
No_of_seqs 292 out of 1327
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 5.6E-66 1.9E-70 616.7 37.8 433 17-466 35-513 (621)
2 1w63_A Adapter-related protein 100.0 1.7E-62 5.8E-67 586.8 37.8 431 17-465 34-493 (618)
3 2vgl_B AP-2 complex subunit be 100.0 2.6E-61 8.8E-66 573.7 40.7 441 14-474 10-469 (591)
4 3tjz_B Coatomer subunit gamma; 100.0 6.9E-52 2.3E-56 459.0 14.0 318 18-346 27-354 (355)
5 1b3u_A Protein (protein phosph 99.7 4.5E-14 1.5E-18 164.8 31.5 423 22-465 92-551 (588)
6 2vgl_B AP-2 complex subunit be 99.6 3.5E-13 1.2E-17 159.8 32.6 416 19-459 51-529 (591)
7 1oyz_A Hypothetical protein YI 99.6 5E-14 1.7E-18 150.2 22.1 253 97-419 24-277 (280)
8 1b3u_A Protein (protein phosph 99.6 3.7E-13 1.3E-17 157.0 29.1 432 16-464 9-511 (588)
9 2jdq_A Importin alpha-1 subuni 99.6 5.8E-13 2E-17 150.4 29.8 353 97-463 21-444 (450)
10 1w63_A Adapter-related protein 99.6 2.8E-13 9.7E-18 161.6 28.1 424 20-467 73-545 (618)
11 2z6g_A B-catenin; FULL-length, 99.5 3E-12 1E-16 156.8 28.1 355 98-464 117-520 (780)
12 4fdd_A Transportin-1; heat rep 99.5 2E-11 6.9E-16 150.4 35.4 380 93-479 10-452 (852)
13 4fdd_A Transportin-1; heat rep 99.5 8.9E-11 3.1E-15 144.6 39.6 428 18-458 11-511 (852)
14 1wa5_B Importin alpha subunit; 99.5 5.8E-12 2E-16 146.8 26.3 316 98-427 89-460 (530)
15 4b8j_A Importin subunit alpha- 99.4 2.3E-11 7.7E-16 141.5 26.8 355 97-465 75-499 (528)
16 2jdq_A Importin alpha-1 subuni 99.4 4.7E-11 1.6E-15 134.7 28.6 283 97-388 65-391 (450)
17 3now_A UNC-45 protein, SD10334 99.4 1.4E-10 4.7E-15 140.9 34.0 420 20-455 250-775 (810)
18 1ibr_B P95, importin beta-1 su 99.4 1.6E-11 5.4E-16 138.7 24.2 353 100-465 5-440 (462)
19 2bpt_A Importin beta-1 subunit 99.4 6.9E-10 2.4E-14 135.6 40.4 440 18-465 5-532 (861)
20 2z6h_A Catenin beta-1, beta-ca 99.3 7.2E-09 2.5E-13 123.8 42.7 455 16-481 13-549 (644)
21 1wa5_B Importin alpha subunit; 99.3 2.2E-10 7.6E-15 133.3 28.5 317 131-462 87-457 (530)
22 2vgl_A Adaptor protein complex 99.3 3.3E-10 1.1E-14 135.1 30.1 422 20-465 77-553 (621)
23 1u6g_C TIP120 protein, CAND1; 99.3 6.9E-10 2.4E-14 142.0 33.7 434 16-461 5-547 (1230)
24 4b8j_A Importin subunit alpha- 99.3 1.6E-09 5.5E-14 125.8 32.8 315 133-461 76-442 (528)
25 2bpt_A Importin beta-1 subunit 99.3 1.2E-08 3.9E-13 124.8 41.6 401 50-461 131-626 (861)
26 1jdh_A Beta-catenin; beta-cate 99.3 1E-09 3.5E-14 126.6 29.5 348 97-459 18-423 (529)
27 1qgr_A Protein (importin beta 99.3 2.1E-09 7.1E-14 131.6 33.6 437 21-462 176-722 (876)
28 1oyz_A Hypothetical protein YI 99.3 5.3E-10 1.8E-14 118.9 24.4 252 55-342 25-279 (280)
29 2z6g_A B-catenin; FULL-length, 99.3 5.7E-09 1.9E-13 127.8 36.2 447 19-479 152-683 (780)
30 3ltm_A Alpha-REP4; protein eng 99.2 4.4E-10 1.5E-14 114.4 20.7 185 97-309 20-204 (211)
31 1qgr_A Protein (importin beta 99.2 1.6E-08 5.5E-13 123.7 38.2 433 18-460 2-535 (876)
32 3ul1_B Importin subunit alpha- 99.2 1E-08 3.5E-13 119.3 33.9 353 98-461 59-477 (510)
33 1jdh_A Beta-catenin; beta-cate 99.2 2.4E-09 8.2E-14 123.5 26.9 330 124-466 10-389 (529)
34 3ltj_A Alpharep-4; protein eng 99.2 1.1E-09 3.6E-14 110.6 20.5 182 97-306 15-196 (201)
35 2z6h_A Catenin beta-1, beta-ca 99.2 4.5E-09 1.5E-13 125.6 27.9 328 126-466 9-386 (644)
36 3tpo_A Importin subunit alpha- 99.2 1.3E-08 4.5E-13 118.8 30.5 352 98-460 78-495 (529)
37 1u6g_C TIP120 protein, CAND1; 99.1 3.4E-09 1.2E-13 135.6 27.3 377 99-479 9-485 (1230)
38 3now_A UNC-45 protein, SD10334 99.1 2.5E-08 8.5E-13 121.2 32.7 354 97-463 291-738 (810)
39 1ibr_B P95, importin beta-1 su 99.1 1.2E-08 4.2E-13 114.9 26.6 361 18-391 2-441 (462)
40 3ltm_A Alpha-REP4; protein eng 99.1 1E-08 3.4E-13 104.3 21.8 187 52-272 18-204 (211)
41 3ltj_A Alpharep-4; protein eng 99.0 1.2E-08 4.1E-13 102.8 20.6 184 53-270 14-197 (201)
42 3ul1_B Importin subunit alpha- 99.0 4.6E-07 1.6E-11 105.3 36.4 318 17-344 57-429 (510)
43 3tpo_A Importin subunit alpha- 99.0 1.1E-06 3.9E-11 102.3 38.9 316 18-343 77-447 (529)
44 4hxt_A De novo protein OR329; 98.9 9.2E-08 3.1E-12 98.7 22.5 205 133-344 4-240 (252)
45 3tjz_B Coatomer subunit gamma; 98.9 3E-08 1E-12 109.8 19.5 274 131-418 68-347 (355)
46 4hxt_A De novo protein OR329; 98.8 5.5E-07 1.9E-11 92.7 24.4 208 98-312 4-245 (252)
47 1xm9_A Plakophilin 1; armadill 98.8 9.1E-07 3.1E-11 101.4 27.0 349 99-465 5-452 (457)
48 4db8_A Armadillo-repeat protei 98.8 1.6E-07 5.6E-12 97.5 18.7 215 98-345 14-251 (252)
49 4ady_A RPN2, 26S proteasome re 98.7 2.7E-05 9.3E-10 95.2 37.6 355 14-408 320-701 (963)
50 3l6x_A Catenin delta-1; cateni 98.7 5.5E-06 1.9E-10 97.5 30.3 341 98-464 50-478 (584)
51 4db8_A Armadillo-repeat protei 98.6 1.3E-06 4.4E-11 90.6 19.5 209 52-270 11-250 (252)
52 1xm9_A Plakophilin 1; armadill 98.5 3.9E-05 1.3E-09 87.8 29.2 320 18-348 3-452 (457)
53 3b2a_A TON_1937, putative unch 98.5 2.7E-06 9.2E-11 87.4 17.1 185 171-358 34-231 (265)
54 3nmz_A APC variant protein; pr 98.5 2.7E-05 9.1E-10 89.3 27.2 242 99-344 35-362 (458)
55 1te4_A Conserved protein MTH18 98.4 1.6E-07 5.5E-12 88.7 4.1 117 97-230 13-129 (131)
56 3l6x_A Catenin delta-1; cateni 98.4 0.00013 4.5E-09 85.8 29.5 329 15-352 46-483 (584)
57 4db6_A Armadillo repeat protei 98.4 1.3E-05 4.4E-10 80.7 17.9 176 99-307 15-208 (210)
58 4db6_A Armadillo repeat protei 98.3 2E-05 6.7E-10 79.3 17.6 187 48-270 7-208 (210)
59 2qk2_A LP04448P; mini spindles 98.3 1.3E-05 4.3E-10 83.4 15.9 185 126-344 10-204 (242)
60 2x19_B Importin-13; nuclear tr 98.2 0.00014 4.9E-09 90.3 26.2 394 57-465 28-521 (963)
61 2db0_A 253AA long hypothetical 98.2 0.00041 1.4E-08 68.7 23.0 202 131-336 32-237 (253)
62 4ady_A RPN2, 26S proteasome re 98.2 0.00019 6.6E-09 87.8 25.3 326 29-387 370-721 (963)
63 1te4_A Conserved protein MTH18 98.1 5.8E-06 2E-10 77.9 8.8 118 55-198 14-131 (131)
64 2qk2_A LP04448P; mini spindles 98.1 3.5E-05 1.2E-09 80.0 15.1 174 246-426 19-207 (242)
65 2x1g_F Cadmus; transport prote 98.1 0.00029 9.9E-09 87.8 25.9 399 65-478 18-555 (971)
66 3nmw_A APC variant protein; AR 98.1 0.0001 3.4E-09 81.8 19.1 127 218-344 97-246 (354)
67 2db0_A 253AA long hypothetical 98.0 0.00047 1.6E-08 68.3 20.3 199 177-386 39-245 (253)
68 3opb_A SWI5-dependent HO expre 98.0 0.00066 2.3E-08 81.6 25.6 308 110-424 308-728 (778)
69 1wa5_C Importin alpha RE-expor 98.0 0.0012 4E-08 82.4 28.7 362 20-390 363-794 (960)
70 3nmw_A APC variant protein; AR 98.0 0.00019 6.4E-09 79.6 19.1 236 105-346 41-335 (354)
71 3nmz_A APC variant protein; pr 97.9 0.0011 3.9E-08 75.8 24.9 228 113-346 165-451 (458)
72 3opb_A SWI5-dependent HO expre 97.9 0.02 6.7E-07 69.0 35.6 431 17-461 132-730 (778)
73 1wa5_C Importin alpha RE-expor 97.9 0.0058 2E-07 76.2 32.0 329 127-462 81-525 (960)
74 2qk1_A Protein STU2; STU2P, XM 97.8 0.00075 2.6E-08 70.9 18.3 196 134-340 19-245 (249)
75 2qk1_A Protein STU2; STU2P, XM 97.5 0.00099 3.4E-08 70.0 14.8 174 21-199 20-219 (249)
76 3ibv_A Exportin-T; karyopherin 97.5 0.04 1.4E-06 68.9 31.2 391 64-466 18-528 (980)
77 2x19_B Importin-13; nuclear tr 97.5 0.17 5.9E-06 62.5 35.9 344 64-426 459-848 (963)
78 1xqr_A HSPBP1 protein; armadil 97.4 0.0013 4.4E-08 71.0 13.8 150 133-314 83-244 (296)
79 1xqr_A HSPBP1 protein; armadil 97.3 0.0038 1.3E-07 67.3 16.0 136 321-463 86-239 (296)
80 3m1i_C Exportin-1; heat repeat 97.2 0.078 2.7E-06 66.7 28.8 149 317-465 345-532 (1049)
81 3grl_A General vesicular trans 97.2 0.037 1.3E-06 65.1 23.6 293 142-468 33-400 (651)
82 2x1g_F Cadmus; transport prote 97.1 0.045 1.6E-06 68.0 25.8 308 108-427 365-763 (971)
83 1lrv_A LRV, leucine-rich repea 97.0 0.00027 9.2E-09 74.2 3.2 184 105-383 59-242 (244)
84 3a6p_A Exportin-5; exportin-5, 96.9 0.6 2.1E-05 59.6 33.3 402 65-479 24-582 (1204)
85 3u0r_A Apoptosis inhibitor 5; 96.9 0.53 1.8E-05 53.3 28.3 278 105-393 37-364 (507)
86 3tt9_A Plakophilin-2; cell adh 96.6 0.094 3.2E-06 54.4 18.6 103 244-346 54-181 (233)
87 3hs8_A Adaptor protein complex 96.5 0.0091 3.1E-07 63.5 10.7 110 737-849 66-179 (273)
88 1lsh_A Lipovitellin (LV-1N, LV 96.5 0.17 5.9E-06 63.7 24.1 261 33-309 289-577 (1056)
89 3b2a_A TON_1937, putative unch 96.5 0.081 2.8E-06 54.6 16.5 96 99-199 78-178 (265)
90 3m1i_C Exportin-1; heat repeat 96.5 1.3 4.4E-05 55.6 31.4 434 16-463 12-570 (1049)
91 2iw3_A Elongation factor 3A; a 96.4 0.25 8.6E-06 61.2 23.4 240 131-385 54-322 (986)
92 4ffb_C Protein STU2; tubulin f 96.2 0.079 2.7E-06 55.9 15.8 177 22-200 14-212 (278)
93 3o2t_A Symplekin; heat repeat, 96.2 1.2 4.2E-05 49.4 25.7 93 112-208 41-136 (386)
94 3u0r_A Apoptosis inhibitor 5; 96.1 0.27 9.4E-06 55.6 19.7 118 218-341 41-159 (507)
95 1r4x_A Gamma1-COP, coatomer ga 96.0 0.033 1.1E-06 59.0 11.5 127 718-848 37-180 (275)
96 2of3_A ZYG-9; multifunctional 96.0 0.026 9E-07 59.7 10.5 176 290-481 57-249 (266)
97 4hat_C Exportin-1; heat repeat 96.0 3 0.0001 52.3 30.7 185 69-269 31-261 (1023)
98 1lsh_A Lipovitellin (LV-1N, LV 95.8 0.25 8.4E-06 62.3 19.9 181 15-202 354-545 (1056)
99 1pzd_A Coatomer gamma subunit; 95.7 0.044 1.5E-06 59.5 11.0 126 719-848 85-227 (322)
100 3ibv_A Exportin-T; karyopherin 95.6 0.84 2.9E-05 57.0 23.7 92 108-201 455-567 (980)
101 4ffb_C Protein STU2; tubulin f 95.6 0.41 1.4E-05 50.2 17.9 167 136-307 14-211 (278)
102 4hat_C Exportin-1; heat repeat 95.2 1.4 4.7E-05 55.3 23.7 101 100-201 455-570 (1023)
103 3l9t_A Putative uncharacterize 95.2 0.88 3E-05 47.0 18.0 144 240-401 69-218 (240)
104 3gs3_A Symplekin, LD45768P; he 95.2 1.8 6.1E-05 45.4 20.9 106 97-207 17-125 (257)
105 1lrv_A LRV, leucine-rich repea 95.2 0.015 5.1E-07 60.9 4.9 186 59-339 55-240 (244)
106 3tt9_A Plakophilin-2; cell adh 95.2 0.16 5.4E-06 52.7 12.7 103 96-200 8-124 (233)
107 3grl_A General vesicular trans 95.0 0.15 5.1E-06 60.0 13.1 203 239-460 18-239 (651)
108 2iw3_A Elongation factor 3A; a 95.0 1.8 6.3E-05 53.6 23.3 195 245-451 98-313 (986)
109 3l9t_A Putative uncharacterize 94.9 0.5 1.7E-05 48.8 15.1 130 99-239 74-212 (240)
110 1kyf_A Alpha-adaptin C; protei 94.8 0.15 5.2E-06 53.3 11.2 110 737-849 40-153 (247)
111 2of3_A ZYG-9; multifunctional 94.2 0.59 2E-05 49.3 14.1 175 21-200 50-236 (266)
112 3o2t_A Symplekin; heat repeat, 93.8 3.9 0.00013 45.4 20.4 102 18-160 26-129 (386)
113 3gs3_A Symplekin, LD45768P; he 92.9 10 0.00035 39.6 24.0 144 290-436 64-255 (257)
114 3gjx_A Exportin-1; transport, 92.2 11 0.00036 47.5 23.3 135 114-249 500-661 (1073)
115 1ho8_A Vacuolar ATP synthase s 90.4 27 0.00091 39.7 22.0 55 420-474 383-446 (480)
116 3a6p_A Exportin-5; exportin-5, 90.2 17 0.00059 46.2 23.0 71 371-441 315-401 (1204)
117 3dad_A FH1/FH2 domain-containi 86.7 15 0.00053 39.7 16.2 172 251-458 127-318 (339)
118 2g30_A AP-2 complex subunit be 85.9 5.2 0.00018 41.9 11.8 111 738-855 54-172 (258)
119 3oc3_A Helicase MOT1, MOT1; re 85.7 5.1 0.00017 46.4 12.2 228 64-303 184-431 (800)
120 4gmo_A Putative uncharacterize 83.9 7.6 0.00026 46.3 13.6 60 101-160 39-105 (684)
121 3oc3_A Helicase MOT1, MOT1; re 83.7 4.8 0.00016 46.6 10.8 173 256-440 242-414 (800)
122 2kzb_A Autophagy-related prote 82.4 1.9 6.7E-05 37.7 5.4 71 732-802 13-97 (118)
123 2b6c_A Hypothetical protein EF 81.6 17 0.00057 36.8 13.3 85 133-227 126-213 (220)
124 3jxy_A Alkylpurine DNA glycosy 81.2 20 0.0007 36.5 13.9 24 19-42 6-29 (232)
125 3gjx_A Exportin-1; transport, 79.5 21 0.00071 44.9 15.7 127 247-405 33-160 (1073)
126 1t06_A Hypothetical protein; s 79.3 2.7 9.4E-05 43.3 6.5 72 105-178 117-196 (235)
127 3s4w_B Protein FACD2, fanconi 76.1 1.8E+02 0.0062 37.1 23.9 129 241-377 399-539 (1323)
128 4gmo_A Putative uncharacterize 75.9 12 0.00041 44.5 11.7 62 136-201 39-106 (684)
129 1x5b_A Signal transducing adap 74.8 27 0.00093 33.7 11.9 86 253-342 30-122 (163)
130 2r39_A FIXG-related protein; s 74.2 6.4 0.00022 35.9 6.8 53 742-796 34-86 (118)
131 1upk_A MO25 protein; transfera 74.1 1E+02 0.0035 33.3 19.9 114 290-439 175-297 (341)
132 2b6c_A Hypothetical protein EF 73.3 6.2 0.00021 40.0 7.2 83 101-192 129-212 (220)
133 3ldz_A STAM-1, signal transduc 72.6 27 0.00091 32.8 10.9 85 254-342 21-111 (140)
134 3g2s_A C-terminal fragment of 71.3 26 0.00088 33.4 10.5 86 254-343 27-124 (149)
135 3dad_A FH1/FH2 domain-containi 69.4 1.3E+02 0.0044 32.5 17.4 61 135-198 122-187 (339)
136 1t06_A Hypothetical protein; s 69.2 1E+02 0.0035 31.3 17.6 188 18-253 2-199 (235)
137 1elk_A Target of MYB1; superhe 68.9 60 0.002 31.0 12.7 88 252-342 30-127 (157)
138 2kzk_A Uncharacterized protein 68.8 2.6 8.8E-05 36.2 2.5 65 733-802 10-91 (107)
139 1mhq_A ADP-ribosylation factor 66.6 27 0.00092 33.2 9.6 85 254-342 17-113 (148)
140 1juq_A ADP-ribosylation factor 66.6 34 0.0012 33.3 10.5 84 255-342 30-125 (171)
141 3s51_A Protein FACI, fanconi a 64.3 3.1E+02 0.01 35.0 21.4 143 299-441 271-448 (1308)
142 3jxy_A Alkylpurine DNA glycosy 63.5 8.1 0.00028 39.5 5.6 152 59-231 66-224 (232)
143 3fga_B Serine/threonine-protei 62.5 1.9E+02 0.0065 32.0 20.8 65 132-198 130-198 (403)
144 3s4w_B Protein FACD2, fanconi 60.6 3.3E+02 0.011 34.8 20.2 117 241-361 156-272 (1323)
145 3zyq_A Hepatocyte growth facto 56.2 93 0.0032 31.5 12.1 51 255-309 25-75 (226)
146 1ho8_A Vacuolar ATP synthase s 51.2 3.1E+02 0.011 31.0 18.4 65 279-343 396-474 (480)
147 1vsy_4 Proteasome activator BL 47.4 3.1E+02 0.011 33.1 16.5 18 393-410 633-650 (799)
148 1dvp_A HRS, hepatocyte growth 46.3 95 0.0033 31.1 10.2 65 277-342 41-112 (220)
149 1z5h_A Tricorn protease intera 45.4 2.5E+02 0.0085 33.8 15.4 183 15-211 489-675 (780)
150 3rru_A TOM1L1 protein; structu 43.8 1E+02 0.0035 29.3 9.3 87 255-344 33-129 (152)
151 1vsy_4 Proteasome activator BL 41.0 5.5E+02 0.019 30.9 17.9 250 190-443 253-569 (799)
152 1vsy_5 Proteasome activator BL 40.6 1.4E+02 0.0049 37.0 12.4 132 274-406 797-946 (997)
153 2npp_B PP2A, B subunit, serine 40.3 4.4E+02 0.015 29.5 22.4 36 131-168 162-197 (449)
154 4flb_A Regulation of nuclear P 39.2 69 0.0024 29.3 7.2 70 376-445 21-95 (132)
155 3tj1_A RNA polymerase I-specif 38.6 4.3E+02 0.015 31.1 15.2 124 335-465 120-248 (649)
156 1vsy_5 Proteasome activator BL 37.1 3E+02 0.01 34.2 14.5 203 240-446 131-369 (997)
157 3g2s_A C-terminal fragment of 36.8 2.6E+02 0.0088 26.3 10.9 62 95-160 47-126 (149)
158 4atg_A TAF6; transcription, TF 36.6 2.8E+02 0.0097 27.4 11.6 127 332-462 24-162 (196)
159 1upk_A MO25 protein; transfera 36.5 4.4E+02 0.015 28.4 20.3 136 130-269 77-236 (341)
160 3ebb_A Phospholipase A2-activa 34.8 1.6E+02 0.0054 31.3 10.1 100 97-198 148-261 (304)
161 3ldz_A STAM-1, signal transduc 33.5 72 0.0024 29.8 6.4 62 95-160 41-114 (140)
162 1elk_A Target of MYB1; superhe 28.1 3.4E+02 0.012 25.6 10.3 64 94-160 51-130 (157)
163 1mhq_A ADP-ribosylation factor 27.4 1.1E+02 0.0038 28.9 6.6 66 95-160 37-116 (148)
164 1dvp_A HRS, hepatocyte growth 26.7 1.3E+02 0.0045 30.0 7.5 63 95-160 41-115 (220)
165 3ut4_A CTHE_2751, putative unc 26.6 3.9E+02 0.013 24.8 11.1 73 115-198 16-88 (134)
166 3zyq_A Hepatocyte growth facto 25.5 5.2E+02 0.018 25.8 11.8 64 94-160 43-118 (226)
167 3fga_B Serine/threonine-protei 25.4 7.1E+02 0.024 27.4 19.3 114 340-456 278-398 (403)
168 1vdy_A Hypothetical protein (R 22.9 1.5E+02 0.0053 27.8 6.5 46 312-358 45-90 (140)
169 2fv2_A RCD1 required for cell 22.0 6.8E+02 0.023 25.9 13.9 32 98-131 5-38 (268)
170 3idu_A Uncharacterized protein 20.0 62 0.0021 29.9 3.1 43 752-796 4-46 (127)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=5.6e-66 Score=616.66 Aligned_cols=433 Identities=16% Similarity=0.278 Sum_probs=387.4
Q ss_pred ccHHHHHHHhcC---CChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch
Q 002905 17 AIANEIKEALEG---NDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (867)
Q Consensus 17 ~~~~eIr~~L~s---~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E 93 (867)
.++++||+.|++ .+.++|+++|+|+||++++|+|++++||+|++ +++|+|+++||+||+|++.+++.++ +.
T Consensus 35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvk-l~~s~~~~~Krl~YL~l~~~~~~~~-----e~ 108 (621)
T 2vgl_A 35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVN-LLSSNRYTEKQIGYLFISVLVNSNS-----EL 108 (621)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHH-GGGCSCHHHHHHHHHHHHHSCCCCH-----HH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHH-HhcCCCHHHHHHHHHHHHHHccCCc-----HH
Confidence 467899999995 37889999999999999999999999999999 7799999999999999999955442 23
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhccCCCccccc--
Q 002905 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNL--QHRHPYIRRNAILAVMAIYKLPQGEQLLV-- 169 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L--~d~~pyVRK~A~lal~kI~~l~~~p~li~-- 169 (867)
++|+||+|+|||+||||++||+|||+||+|++|++++.+.|.|+++| .|++|||||+|++|++++|+ .+|++++
T Consensus 109 ~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~--~~p~~~~~~ 186 (621)
T 2vgl_A 109 IRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR--TSPDLVPMG 186 (621)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH--HCGGGCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH--hChhhcCch
Confidence 69999999999999999999999999999999999999999999999 99999999999999999999 8999999
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcchhhH------HHHHHHHhhhc---C-----------ccchHHHHHHHHHH
Q 002905 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA------INYLLTHVDRV---S-----------EWGELLQMVVLELI 229 (867)
Q Consensus 170 d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a------l~~L~~~l~~i---~-----------~~~p~lQ~~iL~ll 229 (867)
++.+.+.++| .|+|++|+.+|+.+|+++++++. ++.+.+.+.++ + ..+||+|+.+|+++
T Consensus 187 ~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 187 DWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp SCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred hHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 8999999987 89999999999999999987552 22233333322 1 23799999999999
Q ss_pred HHhhhc-CchhHHHHHHHHHHHHcC------------CCh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHH
Q 002905 230 RKVCRT-NKGEKGKYIKIIISLLNA------------PST--AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNN 294 (867)
Q Consensus 230 ~~~~~~-~p~~~~~li~~L~~lL~s------------~s~--aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~N 294 (867)
+.|++. +|+.+..+.+.+..++++ .|+ +|+|||+++++++.+.++.++.++.++..++ .++|+|
T Consensus 266 ~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L-~~~~~n 344 (621)
T 2vgl_A 266 QCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFL-QHRETN 344 (621)
T ss_dssp GGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS-SCSCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-cCCCcc
Confidence 999985 578888888888776632 233 9999999999999988888888888877665 689999
Q ss_pred HHHHHHHHHHHHHhhCh--hhHHHHHHhheeccc-CCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCC
Q 002905 295 VKLIVLDRLNELRSSHR--DIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKN 371 (867)
Q Consensus 295 vk~ivL~~L~~L~~~~p--~~l~~~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d 371 (867)
+||++|+.|..+...+| .++++|...|+.||. |+|.+||++||++++.|+|++|++.|+.+|++++.. .|
T Consensus 345 iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~-------~d 417 (621)
T 2vgl_A 345 LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET-------AD 417 (621)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------CC
T ss_pred hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh-------cC
Confidence 99999999999998886 789999999999999 999999999999999999999999999999988764 36
Q ss_pred HHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchH-hHH
Q 002905 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAA-RVC 450 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~-~v~ 450 (867)
.+||++++++|+.||.+||+.+.||+++|++++...++++..|++..+++++.++|++|.+++.+|++.+.+.... .+.
T Consensus 418 ~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li 497 (621)
T 2vgl_A 418 YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLV 497 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999876543 578
Q ss_pred HHHhhHhhccCCCCCc
Q 002905 451 TCALWIIGEYCQSLSE 466 (867)
Q Consensus 451 ~~alWiLGEY~~~~~~ 466 (867)
++++|++||||+..++
T Consensus 498 ~~~~wilGEy~~~~~~ 513 (621)
T 2vgl_A 498 KVGGYILGEFGNLIAG 513 (621)
T ss_dssp HHHHHHHHHHTHHHHS
T ss_pred HHHHHHhcchHHHhcc
Confidence 8999999999987765
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.7e-62 Score=586.83 Aligned_cols=431 Identities=16% Similarity=0.268 Sum_probs=387.4
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch-HH
Q 002905 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE-MI 95 (867)
Q Consensus 17 ~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E-mi 95 (867)
.+.++||+.|++++.+.|+++|+|++|++++|+|++++||+|+++ ++|+|+++||+||+|+..+. +++ +| ++
T Consensus 34 ~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~-~~s~~~~~Krl~Yl~~~~~~--~~~----~e~~~ 106 (618)
T 1w63_A 34 KECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKL-IASQKFTDKRIGYLGAMLLL--DER----QDVHL 106 (618)
T ss_dssp HHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHH-HHSSSHHHHHHHHHHHHHHC--CCC----HHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHH-HcCCchHHHHHHHHHHHHHh--CCC----cHHHH
Confidence 467899999999999999999999999999999999999999994 58999999999999999994 432 56 59
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHH
Q 002905 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll 175 (867)
|+||+|+|||+||||++||+|||+||+|+.+++++.+++.|.++|.|++|||||+|++|++++|+ .+|++++.+.+.+
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~--~~p~~v~~~~~~l 184 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR--KVPELMEMFLPAT 184 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH--HCGGGGGGGGGGT
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--HChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 8999999888888
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchhhH---------HHHHHHHhhhc------------CccchHHHHHHHHHHHHhhh
Q 002905 176 EKVLSTEQDPSAKRNAFLMLFTCDQDRA---------INYLLTHVDRV------------SEWGELLQMVVLELIRKVCR 234 (867)
Q Consensus 176 ~~lL~~D~D~~v~~~A~~~L~ei~~~~a---------l~~L~~~l~~i------------~~~~p~lQ~~iL~ll~~~~~ 234 (867)
..+| .|.|++|+.+|+.+|.++.+... ++.|.+.+.++ ...+||+|+.++++++.+++
T Consensus 185 ~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 185 KNLL-NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TTST-TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHh-CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 8866 89999999999999999875431 23344544442 14689999999999999999
Q ss_pred cCchhHHHHHHHHHHHHcC------CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002905 235 TNKGEKGKYIKIIISLLNA------PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 235 ~~p~~~~~li~~L~~lL~s------~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
.+|+....+++.|..++.+ .+++|+|||+++++.+.+.+.....++..+.+++ .++|+|+||++|+.|..+..
T Consensus 264 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~ 342 (618)
T 1w63_A 264 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFL-LNNDKNIRYVALTSLLKTVQ 342 (618)
T ss_dssp TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-TCSSTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHHh
Confidence 9998888888888888753 3568999999999999887766666777777764 67899999999999999999
Q ss_pred hChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc
Q 002905 309 SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (867)
Q Consensus 309 ~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k 388 (867)
.+|.++++|...++.|++|+|.+||++|+++++.|++++|++.|+.+|.+++.. .+.+||+.++.+|+.||.+
T Consensus 343 ~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~-------~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 343 TDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS-------CEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHS
T ss_pred hCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877653 4689999999999999999
Q ss_pred CCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcc-cchHhHHHHHhhHhhccCCCCC
Q 002905 389 FPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQ-IRAARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 389 f~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~-i~~~~v~~~alWiLGEY~~~~~ 465 (867)
|++...||++.|+++|++.++++..+++..++++++++|+++.+++..|++.+.+ +....+.++++|++|||++...
T Consensus 416 ~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~ 493 (618)
T 1w63_A 416 YAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLV 493 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHT
T ss_pred hCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhc
Confidence 9999999999999999999999999999999999999999999999999999985 4555666789999999997543
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=2.6e-61 Score=573.72 Aligned_cols=441 Identities=21% Similarity=0.354 Sum_probs=393.1
Q ss_pred CCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch
Q 002905 14 GTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (867)
Q Consensus 14 ~~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E 93 (867)
..+.++++||+.|++++.++|+++|+|++|++++|+|++++||+|++ +++++|+.+||+||+|++.+.+.+ +|
T Consensus 10 ~~~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~~~------~e 82 (591)
T 2vgl_B 10 NKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQ------PD 82 (591)
T ss_dssp CSSSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHHHS------HH
T ss_pred ccCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcccC------ch
Confidence 34578999999999999999999999999999999999999999999 789999999999999999996654 45
Q ss_pred H-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc--
Q 002905 94 M-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-- 170 (867)
Q Consensus 94 m-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d-- 170 (867)
+ +|++|+|+|||+||||++||+|||+||+++.+++.+.++|.+++++.|++|||||+|+.|++++|+ .+|+.+++
T Consensus 83 ~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~--~~p~~~~~~~ 160 (591)
T 2vgl_B 83 MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD--INAQMVEDQG 160 (591)
T ss_dssp HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH--SSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh--hChhhccccc
Confidence 5 899999999999999999999999999999999999999999999999999999999999999999 89998874
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhhH--------HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHH
Q 002905 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--------INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK 242 (867)
Q Consensus 171 ~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a--------l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~ 242 (867)
+.+.+..+| .|+|+.|+.+|+.+|+++.++.+ ...+..+++.+...+||+|+.++++++++++.++.....
T Consensus 161 ~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~ 239 (591)
T 2vgl_B 161 FLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS 239 (591)
T ss_dssp HHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH
Confidence 668888876 89999999999999999987543 122333334344578999999999999999988888999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhcCC----ChHHHH----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH
Q 002905 243 YIKIIISLLNAPSTAVIYECAGTLVSLSS----APTAIR----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM 314 (867)
Q Consensus 243 li~~L~~lL~s~s~aV~~eaa~tL~~Ls~----~p~~lk----~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l 314 (867)
+++.+..+|++.+++|++||++++..+.+ +++.++ .++.+++.++ ++|+|+||++|+.|..+...+|+++
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~--~~d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL--SGEPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT--TSCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhChHHH
Confidence 99999999999999999999999999863 444454 3445555543 5899999999999999999999999
Q ss_pred HHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH
Q 002905 315 VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS 394 (867)
Q Consensus 315 ~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~ 394 (867)
++|...|+ |+.++|.+||++|+++++.+++++|++.++.+|..++. +.+.+||+.++++|+.|+.+||+.+.
T Consensus 318 ~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~-------~~d~~~r~~~v~aI~~la~~~~~~~~ 389 (591)
T 2vgl_B 318 KQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT-------EVDVDFVRKAVRAIGRCAIKVEQSAE 389 (591)
T ss_dssp TTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTT-------SSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHhChhHHH
Confidence 99988876 66566699999999999999999999999998875432 35789999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHHH
Q 002905 395 TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATI 474 (867)
Q Consensus 395 ~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i 474 (867)
|++++|++++.+.++++..+++.+++++++++|+.++.++..|++.++++..+.++++++|++|||++..++..+.++.+
T Consensus 390 ~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l 469 (591)
T 2vgl_B 390 RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF 469 (591)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998866554444
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=6.9e-52 Score=458.99 Aligned_cols=318 Identities=15% Similarity=0.284 Sum_probs=223.7
Q ss_pred cHHHHHHHhcCC-Ch-HHHHHHHHHHHHHHhCCCCC-----CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCC
Q 002905 18 IANEIKEALEGN-DV-PAKVDAMKKAIMLLLNGETL-----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (867)
Q Consensus 18 ~~~eIr~~L~s~-~~-~~K~~alkklI~l~~~G~d~-----s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l 90 (867)
-++|.| .|+++ .+ .+++++|+|+||+|++|+++ +++|++|++ +++|+|+++|||+|+||+.+++.
T Consensus 27 v~qe~r-~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~k-l~~s~d~~lKrLvYLyl~~~~~~------ 98 (355)
T 3tjz_B 27 VLQEAR-VFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTK-LFQSNDPTLRRMCYLTIKEMSCI------ 98 (355)
T ss_dssp HHHHGG-GTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGGCCCHHHHHHHHHHHHHHTTT------
T ss_pred HHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhCCC------
Confidence 457754 56555 34 44457999999999999995 578999999 78999999999999999999766
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc
Q 002905 91 LPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (867)
Q Consensus 91 ~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d 170 (867)
.+|++|+||+|+||++||||++||+|||+||+|+++++++++.+.++++|.|+||||||+|++|.+++|. ..|+++..
T Consensus 99 ~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~--~~pe~v~~ 176 (355)
T 3tjz_B 99 AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLK--CSFDVVKR 176 (355)
T ss_dssp SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT--TCHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc--cCHHHHHH
Confidence 2579999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcch-hh-HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcC-chhHHHHHHHH
Q 002905 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQ-DR-AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN-KGEKGKYIKII 247 (867)
Q Consensus 171 ~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~-~~-al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~-p~~~~~li~~L 247 (867)
|.+.+..++ .|.||.|+.+|+.+|+++.. ++ ++.+|...+...+..+||.|+.++++++++++.+ |+.+.++++.+
T Consensus 177 ~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l 255 (355)
T 3tjz_B 177 WVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFI 255 (355)
T ss_dssp THHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------
T ss_pred HHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 988888876 89999999999999999986 33 6777777777655668999999999999999998 88899999999
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccC
Q 002905 248 ISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNS 327 (867)
Q Consensus 248 ~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d 327 (867)
.++|++.+++|+|||+++++.+.+.+..+...+...+++|++++|||+||++|++|..+..++|++++.|.++|.+|++|
T Consensus 256 ~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 256 ESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335 (355)
T ss_dssp -CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred HHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccC
Confidence 99999999999999999999998765555556667788888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 002905 328 PNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 328 ~d~~IR~kaLelL~~Lv~~ 346 (867)
+|.+|+..|+..|++.+++
T Consensus 336 ~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 336 ANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp -------------------
T ss_pred CcHhHHHHHHHHhhhccCC
Confidence 9999999999999988775
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.65 E-value=4.5e-14 Score=164.81 Aligned_cols=423 Identities=11% Similarity=0.090 Sum_probs=284.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhCCCC---CCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchH-HHH
Q 002905 22 IKEALEGNDVPAKVDAMKKAIMLLLNGET---LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILI 97 (867)
Q Consensus 22 Ir~~L~s~~~~~K~~alkklI~l~~~G~d---~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em-iLv 97 (867)
+...+.+.+...+..++.-+-.+.. ..+ +...++.++..+..+++...|..+...+..+...-+ +.. --+
T Consensus 92 L~~l~~~~~~~vR~~a~~~L~~l~~-~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-----~~~~~~l 165 (588)
T 1b3u_A 92 LESLATVEETVVRDKAVESLRAISH-EHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-----SAVKAEL 165 (588)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHT-TSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----HHHHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----HHHHHHH
Confidence 3344455566666666544433322 111 112344555445567777777776665555532211 111 123
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCC----chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc--cccch
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--LLVDA 171 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~----~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~--li~d~ 171 (867)
...+.+-++|+++.+|..|+++|+.+. .+...+.++|.+.+++.|.++.||+.|+.++..+.. ..+. ..+.+
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~~ 243 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ--LLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH--HSCHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--hCCHHHHHHHH
Confidence 456666778999999999999999883 445567889999999999999999999999999987 3332 22334
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcchh--------hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCch-----
Q 002905 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--------RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG----- 238 (867)
Q Consensus 172 ~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~--------~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~----- 238 (867)
.+.+..++ .|.++.|+.+|+.+|..+... ..++.+...+ .+.++..+....+.+..++..-+.
T Consensus 244 ~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 319 (588)
T 1b3u_A 244 MPTLRQAA-EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM---KDCEAEVRAAASHKVKEFCENLSADCREN 319 (588)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHhChhhhhh
Confidence 56676765 889999999999998877542 1233444443 356677888888888887764332
Q ss_pred -hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCh-h-
Q 002905 239 -EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PT-AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR-D- 312 (867)
Q Consensus 239 -~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~-~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p-~- 312 (867)
....+++.+..++++.++.|+..++.++..+... +. ....+...+..++ ++.+++||..++..+..+....+ .
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~ 398 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVIGIRQ 398 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhcCHHH
Confidence 2456788888999999999999999999887531 11 1223344445544 67889999999999998876432 1
Q ss_pred hHHHHHHhheecccCCCHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc
Q 002905 313 IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP----RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (867)
Q Consensus 313 ~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~----~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k 388 (867)
........+..++.|+++.+|..+++.+..++.. .....+++.+.+-+ . |.+.++|..++.+++.++..
T Consensus 399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~---d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL----V---DHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG----G---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----c---CCcHHHHHHHHHHHHHHHHH
Confidence 2233445566678899999999999988876531 11234555554322 2 45789999999999999987
Q ss_pred CCcc--HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCC
Q 002905 389 FPEV--ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK--LRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSL 464 (867)
Q Consensus 389 f~~~--a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~--lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~ 464 (867)
+++. .+.+++.|.+++.+.+..++..++..+..+....+. ....++..|...+.+ ..+.++..++|.+|+++...
T Consensus 472 ~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 472 FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD-PVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGC-SCHHHHHHHHHHHHHHGGGS
T ss_pred hCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHHHHHHh
Confidence 7653 234555566666666667777777777777654321 224566667766655 45789999999999998765
Q ss_pred C
Q 002905 465 S 465 (867)
Q Consensus 465 ~ 465 (867)
.
T Consensus 551 ~ 551 (588)
T 1b3u_A 551 D 551 (588)
T ss_dssp C
T ss_pred c
Confidence 4
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=3.5e-13 Score=159.83 Aligned_cols=416 Identities=11% Similarity=0.159 Sum_probs=244.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCch---hHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchH-
Q 002905 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQL---FITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM- 94 (867)
Q Consensus 19 ~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l---~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em- 94 (867)
.-++-+.+.+++...|+-+-.-+. ..++.-+.. ....++.-+.++|..+|.++.-.+..+ . -+|+
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~---~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~-----~~~~~ 119 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLM---NYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---R-----VDKIT 119 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH---HHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---C-----SGGGH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---HHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---C-----hHHHH
Confidence 345666788877766644332222 122222333 233333346889999998886555444 2 1455
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHH--HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc--c
Q 002905 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIE--PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL--L 168 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e--~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l--i 168 (867)
--++..+.+-|.|+||+||-.|..+++++. .|++++ .+++.+.++|.|++|.||..|+.++..+.. ..|+. .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~--~~~~~~~~ 197 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE--SHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT--SCCSCCSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh--hCCCccch
Confidence 345688999999999999999999999884 588887 489999999999999999999999999998 66643 1
Q ss_pred c---c-hHHHHHHHHccCCChhHHHHHHHHHHhcchhh---HHHHHHHHhhhcCccchHHHHHHHHHHHHhhh---cCch
Q 002905 169 V---D-APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR---AINYLLTHVDRVSEWGELLQMVVLELIRKVCR---TNKG 238 (867)
Q Consensus 169 ~---d-~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~---al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~---~~p~ 238 (867)
+ . +..++.. | .+.|+-.+...+.+|..+.+.. .-..+..+...+...++-.....++.+..+.+ .+|+
T Consensus 198 ~l~~~~~~~Ll~~-l-~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~ 275 (591)
T 2vgl_B 198 DLNPQNINKLLTA-L-NECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 275 (591)
T ss_dssp CCHHHHHHHHHHH-H-HHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred hccHHHHHHHHHc-C-CCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHH
Confidence 1 1 1222222 2 3455555555555555544321 11111112222223333334444444444332 1222
Q ss_pred hHH----HHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHhcCCChHHHHH
Q 002905 239 EKG----KYIKIIISLLNAPS------------------------------------TAVIYECAGTLVSLSSAPTAIRA 278 (867)
Q Consensus 239 ~~~----~li~~L~~lL~s~s------------------------------------~aV~~eaa~tL~~Ls~~p~~lk~ 278 (867)
... ++...+..++ +++ ..|+.++..++..+.+.. .++.
T Consensus 276 ~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~-nv~~ 353 (591)
T 2vgl_B 276 YYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA-NIAQ 353 (591)
T ss_dssp SHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS-THHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh-hHHH
Confidence 111 2222222222 233 345555555555544321 2333
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccC--CCCcHHHHHHHH
Q 002905 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI--TPRNINEVVLML 356 (867)
Q Consensus 279 aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv--~~~Nv~~IV~~L 356 (867)
+...+.+. +++.|..+|-.++..+..+..++|.....++..++..+.+.+.+++..++..+..++ .+.-.+.++..|
T Consensus 354 iv~~L~~~-l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L 432 (591)
T 2vgl_B 354 VLAELKEY-ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATL 432 (591)
T ss_dssp HHHHHHHH-TTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHH
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 34444443 356778888888888888888887777777777777788888888888877666654 232223344444
Q ss_pred HHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHH
Q 002905 357 KKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITR 436 (867)
Q Consensus 357 ~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~ 436 (867)
.+.+.. ..+++.+..++-.||+.+...++ ...++..+++-+.+.+..+...++..+.++..+.|+.....+..
T Consensus 433 ~~~l~~------~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ 505 (591)
T 2vgl_B 433 CENLDS------LDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQ 505 (591)
T ss_dssp HHTTTT------CCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHH
T ss_pred HHHHHh------ccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 322211 34567788888888877765543 45666666655555556677777788888888888766566777
Q ss_pred HHHHh-cccchHhHHHHHhhHhhc
Q 002905 437 LLDNF-YQIRAARVCTCALWIIGE 459 (867)
Q Consensus 437 L~~~L-~~i~~~~v~~~alWiLGE 459 (867)
+++.. .+..+++++-.+...++-
T Consensus 506 ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 506 VLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHhhhcCCChHHHHHHHHHHHH
Confidence 77764 344556775555444333
No 7
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.60 E-value=5e-14 Score=150.21 Aligned_cols=253 Identities=13% Similarity=0.026 Sum_probs=182.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
.++.+.+.|.|+|+.+|..|++.|++++.++. ++.+.++|.|+++.||+.|+.++.++.. .+..++...+++.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDA----VRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH----HHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchH----HHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHHHHHH
Confidence 45888899999999999999999999998765 5566778999999999999999999865 2223343445555
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCCh
Q 002905 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (867)
+.+..|.|+.|+.+|+.+|..+.... |.....+++.+...+++.++
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~----------------------------------~~~~~~~~~~L~~~l~d~~~ 142 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKN----------------------------------PIYSPKIVEQSQITAFDKST 142 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHC----------------------------------GGGHHHHHHHHHHHTTCSCH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccC----------------------------------CcccHHHHHHHHHHhhCCCH
Confidence 43448899999999998887765321 11122455667777888888
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHH
Q 002905 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~ka 336 (867)
.|+..|+.+|..+... . +...++.++ +++|+.||..++..|..+....+.++.. ++..|.|++..||..+
T Consensus 143 ~vR~~a~~aL~~~~~~-~----~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~~----L~~~l~d~~~~vR~~A 212 (280)
T 1oyz_A 143 NVRRATAFAISVINDK-A----TIPLLINLL-KDPNGDVRNWAAFAININKYDNSDIRDC----FVEMLQDKNEEVRIEA 212 (280)
T ss_dssp HHHHHHHHHHHTC----C----CHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCCHHHHHH----HHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH-H----HHHHHHHHH-cCCCHHHHHHHHHHHHhhccCcHHHHHH----HHHHhcCCCHHHHHHH
Confidence 9999999999888652 1 344555554 6788899999999998886445555443 5567788999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCC-cccHHHH
Q 002905 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN-VASAIDV 415 (867)
Q Consensus 337 LelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~-~~v~~ev 415 (867)
+..|..+.+++.+..++..|. ++++|..++.+++.++.. .+++.|.+++.+.. +....++
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~-------------d~~vr~~a~~aL~~i~~~------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELK-------------KNTVYDDIIEAAGELGDK------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHT-------------SSSCCHHHHHHHHHHCCG------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred HHHHHHhCCHhhHHHHHHHhc-------------CccHHHHHHHHHHhcCch------hhhHHHHHHHhcCCCcHHHHHH
Confidence 999999998777666555331 123888999999988752 45777888776543 3344444
Q ss_pred HHHH
Q 002905 416 IIFV 419 (867)
Q Consensus 416 i~~l 419 (867)
+..+
T Consensus 274 ~~~l 277 (280)
T 1oyz_A 274 IDKL 277 (280)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.58 E-value=3.7e-13 Score=157.05 Aligned_cols=432 Identities=14% Similarity=0.139 Sum_probs=250.1
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHh-CCCC--CCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCc
Q 002905 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLL-NGET--LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (867)
Q Consensus 16 ~~~~~eIr~~L~s~~~~~K~~alkklI~l~~-~G~d--~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~ 92 (867)
...+..+-+.|.+++...|..+++.+-.+.. .|.+ ...+.+.+.. .. +++.++++.+--.+..+...- |. +
T Consensus 9 ~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~-~~-d~~~~vr~~~~~~L~~~~~~~--~~--~ 82 (588)
T 1b3u_A 9 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTD-TI-YDEDEVLLALAEQLGTFTTLV--GG--P 82 (588)
T ss_dssp SHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHH-TC-CCCHHHHHHHHHHHTTCSGGG--TS--G
T ss_pred cCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHH-hc-CCcHHHHHHHHHHHHHHHhcc--Cc--H
Confidence 3467889999999999999888877644322 3421 1223333333 32 556667666544433321110 11 1
Q ss_pred h-HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc----hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-c
Q 002905 93 E-MILICQNLRNNLQHPNEYIRGVTLRFLCRLNE----TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-Q 166 (867)
Q Consensus 93 E-miLv~NsL~KDL~~pNe~IRglALr~Ls~I~~----~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~ 166 (867)
+ .--+...|.+-+.++++.+|..|...|+++.. ..+.+.++|.+.++..+.++.+|..|+.++..++. ..+ .
T Consensus 83 ~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~--~~~~~ 160 (588)
T 1b3u_A 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP--RVSSA 160 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT--TSCHH
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--hcCHH
Confidence 1 11223445555678999999999988888653 23445567777777777788888888888888777 333 2
Q ss_pred cccchHHHHHHHHccCCChhHHHHHHHHHHhcchh----hH----HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCch
Q 002905 167 LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD----RA----INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG 238 (867)
Q Consensus 167 li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~----~a----l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~ 238 (867)
..+.+.+.+..++ .|.|+.|+.+|+.+|..+... .. ++.|...+ .+.++..+...++.+..++...+.
T Consensus 161 ~~~~l~~~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~---~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 161 VKAELRQYFRNLC-SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHH---TCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHhCCH
Confidence 2233445555544 678888888888887776421 11 22222222 334455555666666665543222
Q ss_pred --hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hHH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh-
Q 002905 239 --EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTA-IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD- 312 (867)
Q Consensus 239 --~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~~-lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~- 312 (867)
....+++.+..++++.+..|+..++.++..+... +.. ...+...++.++ +++++.+|-.+...|..+....+.
T Consensus 237 ~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChh
Confidence 2344566666666666667777777776665421 111 122333444443 456667776666666666543211
Q ss_pred -----hHHH---------------------------------------HHHhheecccCCCHHHHHHHHHHHhccCCCCc
Q 002905 313 -----IMVD---------------------------------------LIMDVLRALNSPNLDIRRKTLDIVLELITPRN 348 (867)
Q Consensus 313 -----~l~~---------------------------------------~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~N 348 (867)
.+.. ....++.++.|++..||..+++.+..++..-.
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence 1111 12223344556666666666655554443222
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc--HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhC
Q 002905 349 INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV--ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN 426 (867)
Q Consensus 349 v~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~--a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~ 426 (867)
.+...+.+...+..... +.+..+|..++.+++.++..++.. .+.+++.++.++.+....++..++..+..++...
T Consensus 396 ~~~~~~~~lp~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 396 IRQLSQSLLPAIVELAE---DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 21222222222323222 457788999999998888655432 3567888888898888888888888888887754
Q ss_pred cc--cHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCC
Q 002905 427 PK--LRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSL 464 (867)
Q Consensus 427 p~--lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~ 464 (867)
+. ....++..|...+.+ .+..++..++|++|+.+...
T Consensus 473 ~~~~~~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~ 511 (588)
T 1b3u_A 473 GKEWAHATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVC 511 (588)
T ss_dssp CHHHHHHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhc
Confidence 32 123455555554433 45678999999999876543
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.58 E-value=5.8e-13 Score=150.44 Aligned_cols=353 Identities=13% Similarity=0.131 Sum_probs=252.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcC----Cchh---hHH--HHHHHHHHhcCCC-ChHHHHHHHHHHHHhhccCCCcc
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRL----NETE---IIE--PLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQ 166 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I----~~~e---l~e--~L~~~V~~~L~d~-~pyVRK~A~lal~kI~~l~~~p~ 166 (867)
++..+.+.|+++++.+|-.|++.|.++ ..+. +++ .++|.+.+.|.+. ++.||..|+.++.++.. ..++
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~--~~~~ 98 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS--GNSL 98 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS--SCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHH
Confidence 456677788899999999999999886 2332 333 5889999999998 99999999999999987 5443
Q ss_pred cc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhcCccchHHHHHHHHHHH
Q 002905 167 LL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIR 230 (867)
Q Consensus 167 li-----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~ 230 (867)
.. ..+.+.+-.+| .+.|+.++..|+.+|..+..+. +++.|..++.. ..++-.+..++..+.
T Consensus 99 ~~~~~~~~~~i~~L~~lL-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALS 175 (450)
T ss_dssp HHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 22 23445555655 7889999999999999886532 24455555442 356677889999999
Q ss_pred HhhhcC-ch----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCh-HHHH-----HHHHHHHHHHccCCCHHHHHHH
Q 002905 231 KVCRTN-KG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAP-TAIR-----AAANTYSQLLLSQSDNNVKLIV 299 (867)
Q Consensus 231 ~~~~~~-p~----~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p-~~lk-----~aa~~li~ll~~~sD~Nvk~iv 299 (867)
.++... |. .....++.+..++.+.++.|+..++.+|.++.... ...+ .+...++.++ .++++.++..+
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a 254 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPA 254 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHH
Confidence 998654 32 23567899999999999999999999999997642 2222 2456677766 57889999999
Q ss_pred HHHHHHHHhhChhhHH-----HHHHhheecccCCCHHHHHHHHHHHhccCC--CCcHHH-----HHHHHHHHHHHhhcCC
Q 002905 300 LDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINE-----VVLMLKKEVVKTQSGE 367 (867)
Q Consensus 300 L~~L~~L~~~~p~~l~-----~~~~~il~~L~d~d~~IR~kaLelL~~Lv~--~~Nv~~-----IV~~L~kel~~~~~~~ 367 (867)
+..|..+....+...+ ..+..++.+|.+++..+|+.++..+..++. +.+... +++.|.+-+.
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~------ 328 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ------ 328 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH------
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh------
Confidence 9999999875554221 244556778899999999999999999984 333332 3444443332
Q ss_pred ccCCHHHHHHHHHHHHHhHccCC-ccH-----HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccH-----------
Q 002905 368 LEKNGEYRQMLIQAIHSCAIKFP-EVA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR----------- 430 (867)
Q Consensus 368 ~d~d~e~r~~lI~aI~~la~kf~-~~a-----~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr----------- 430 (867)
+.++++|..++.+|+.++.... +.. ..+++.|++++.+....+...++..+..++...+...
T Consensus 329 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~ 407 (450)
T 2jdq_A 329 -TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYC 407 (450)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHH
T ss_pred -cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHH
Confidence 2468899999999999987532 222 2478889999998888888888888888887544311
Q ss_pred HHH-----HHHHHHHhcccchHhHHHHHhhHhhccCCC
Q 002905 431 VSI-----ITRLLDNFYQIRAARVCTCALWIIGEYCQS 463 (867)
Q Consensus 431 ~~i-----l~~L~~~L~~i~~~~v~~~alWiLGEY~~~ 463 (867)
..+ +++|.....+ .+..++..++++++.|-..
T Consensus 408 ~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 408 ALIEEAYGLDKIEFLQSH-ENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHCHHHHHHHHCH-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHCCc
Confidence 111 2334333322 4567888888888877543
No 10
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=2.8e-13 Score=161.60 Aligned_cols=424 Identities=11% Similarity=0.104 Sum_probs=290.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHh---hcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH-
Q 002905 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRY---VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI- 95 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~---v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi- 95 (867)
-++-+.+.+++.+.|+-+-- +++.....-+.+.+-+++. -+.++|...+-++.-++..+ .+ +++.
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl---~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i--~~------~~~~~ 141 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYL---GAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM--GS------SEMCR 141 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH--CC------HHHHH
T ss_pred HHHHHHHcCCchHHHHHHHH---HHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc--CC------HHHHH
Confidence 45666777777654432221 2233333334544433332 35788999998887777766 22 3553
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc------
Q 002905 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL------ 167 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l------ 167 (867)
-+...+.+-|.|+||+||-.|+.+++++. .|++++.+++.+.++|.|++|.|+-.|+.++..+.. .+|+.
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~--~~~~~~~~~~~ 219 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE--RSPDMLAHFRK 219 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC--SHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH--hChHHHHHHHH
Confidence 35688889999999999999999999985 699999999999999999999999999999999998 66642
Q ss_pred -ccchHHHHHHHHc----------cCCChhHHHHHHHHHHhcchhh------HHHHHHHHhhhc---CccchHHHHHHHH
Q 002905 168 -LVDAPEMIEKVLS----------TEQDPSAKRNAFLMLFTCDQDR------AINYLLTHVDRV---SEWGELLQMVVLE 227 (867)
Q Consensus 168 -i~d~~~ll~~lL~----------~D~D~~v~~~A~~~L~ei~~~~------al~~L~~~l~~i---~~~~p~lQ~~iL~ 227 (867)
+|.+.+++.+++. ...||..+...+.+|..+.+.. ..++|..++... ...++.....+++
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~ 299 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVL 299 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 2222233333221 1357888887887777765432 134555554322 2234455666777
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002905 228 LIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (867)
Q Consensus 228 ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L 306 (867)
.+..+.. +|..+....+.+..+|.+.++.|+|-|..+|..+.. .|..++.....++..+ +++|..||..+|+.|..+
T Consensus 300 ~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l-~d~d~~Ir~~alelL~~l 377 (618)
T 1w63_A 300 TIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL-KDLDVSIKRRAMELSFAL 377 (618)
T ss_dssp HHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-GSSCHHHHHHHHHHHHHH
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-cCCChhHHHHHHHHHHHH
Confidence 7766533 455556678899999999999999999999988853 3444444444445544 688999999999999999
Q ss_pred HhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHH
Q 002905 307 RSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHS 384 (867)
Q Consensus 307 ~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~--~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~ 384 (867)
.... -+...+..++..+.+.|.++|+.++..+..++.. .+....++.|.+-+.. .+..++.+++..+..
T Consensus 378 ~~~~--nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~-------~~~~v~~~~~~~l~~ 448 (618)
T 1w63_A 378 VNGN--NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT-------AGSYVRDDAVPNLIQ 448 (618)
T ss_dssp CCSS--STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH-------TGGGSCSSHHHHHHH
T ss_pred cccc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh-------ccchhHHHHHHHHHH
Confidence 7532 1344445566667788999999999999999873 7888889988855443 234577788899999
Q ss_pred hHccCCccHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHHhCcc----------c-HHHHHHHHHHHhcc-cchHhHH
Q 002905 385 CAIKFPEVASTVVHLLMDFLGDS--NVASAIDVIIFVREIIEMNPK----------L-RVSIITRLLDNFYQ-IRAARVC 450 (867)
Q Consensus 385 la~kf~~~a~~~v~~Ll~lL~~~--~~~v~~evi~~l~~ii~~~p~----------l-r~~il~~L~~~L~~-i~~~~v~ 450 (867)
+..++|+....++..|.+++.+. .+....-++..+.+....-++ . -..++..|...+.. -.++.++
T Consensus 449 ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 449 LITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp HHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 98999999889999999999852 334444566777777643211 1 12233334343332 3467889
Q ss_pred HHHhhHhhccCCCCCcH
Q 002905 451 TCALWIIGEYCQSLSEV 467 (867)
Q Consensus 451 ~~alWiLGEY~~~~~~i 467 (867)
..++|.++.++...++.
T Consensus 529 ~~~lta~~Kl~~~~~~~ 545 (618)
T 1w63_A 529 GYALTAIMKLSTRFTCT 545 (618)
T ss_dssp HHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhCcch
Confidence 99999998887766543
No 11
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.49 E-value=3e-12 Score=156.81 Aligned_cols=355 Identities=10% Similarity=0.081 Sum_probs=249.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc--cc---cchH
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--LL---VDAP 172 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~--li---~d~~ 172 (867)
+..+.++|.+|++.+|..|++.++.+...++....+|.+.++|.+.++.||++|+.++.++.. ..+. .+ +.+.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~--~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK--KEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT--SHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC--CChhHHHHHhccChH
Confidence 467889999999999999999999887788888899999999999999999999999999987 3321 11 1233
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHH-
Q 002905 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKG- 241 (867)
Q Consensus 173 ~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~- 241 (867)
+.+-.+|..+.|+.++.+|+.+|..+.... +++.|..+++ ..++-+|...+..|..++..++..+.
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~---~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG---SPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 334445645669999999999999875332 3445555543 45688899999999999876555433
Q ss_pred ----HHHHHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC-
Q 002905 242 ----KYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIR-----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH- 310 (867)
Q Consensus 242 ----~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk-----~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~- 310 (867)
..++.+..+|.+.+..|+..|+.+|..+.. +++... ..+..+++++...++...+..+...|..|....
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 356789999999888888888777776653 232211 245677887765555666767777777776421
Q ss_pred --hhhHH-HHHHhheecccCCCHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHH
Q 002905 311 --RDIMV-DLIMDVLRALNSPNLDIRRKTLDIVLELITPR----NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIH 383 (867)
Q Consensus 311 --p~~l~-~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~----Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~ 383 (867)
+.+++ ..+..++.++.+++..+++.++..+..|+... ....++..|.+-+. ..+.++|..++.+|+
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~-------~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG-------SDDINVVTCAAGILS 424 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT-------CSCHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence 12222 23455777888999999999999999887533 45667777764332 347899999999999
Q ss_pred HhHccCCccH-----HHHHHHHHHHHcCCC--cccHHHHHHHHHHHHHhCccc---H-----HHHHHHHHHHhcccchHh
Q 002905 384 SCAIKFPEVA-----STVVHLLMDFLGDSN--VASAIDVIIFVREIIEMNPKL---R-----VSIITRLLDNFYQIRAAR 448 (867)
Q Consensus 384 ~la~kf~~~a-----~~~v~~Ll~lL~~~~--~~v~~evi~~l~~ii~~~p~l---r-----~~il~~L~~~L~~i~~~~ 448 (867)
.++...+... ...++.|+++|.+.+ +.+...++..|+.+....++. + ..++..|++.|.+-..+.
T Consensus 425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~ 504 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504 (780)
T ss_dssp HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence 9986543222 236788899887643 267788888999887655552 1 234778888887655568
Q ss_pred HHHHHhhHhhccCCCC
Q 002905 449 VCTCALWIIGEYCQSL 464 (867)
Q Consensus 449 v~~~alWiLGEY~~~~ 464 (867)
++..++|+||..+...
T Consensus 505 v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 505 LIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHhcCH
Confidence 9999999999987643
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.49 E-value=2e-11 Score=150.37 Aligned_cols=380 Identities=13% Similarity=0.143 Sum_probs=263.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch
Q 002905 93 EMILICQNLRNNLQHPNEYIRGVTLRFLCRLNE-TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA 171 (867)
Q Consensus 93 EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~-~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~ 171 (867)
+.+--...+.+...|||.-+|..|-..|..+.. |+....+. .+...+.+.++.||..|+..+.+..+. ....+-++.
T Consensus 10 ~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~-~il~~~~~~~~~vR~~a~~~Lkn~i~~-~w~~~~~~~ 87 (852)
T 4fdd_A 10 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLI-FVLTKLKSEDEPTRSLSGLILKNNVKA-HFQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHTCTTSCHHHHHHHHHHHHHHTTT-SGGGCCHHH
T ss_pred hhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHH-HHHhccCCCChHHHHHHHHHHHHHHHH-ccCCCCHHH
Confidence 444444556667789999999999999999875 76655444 444455788999999999999887762 223222222
Q ss_pred HHHHHHHH---ccCCChhHHHHHHHHHHhcchhh-------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchh--
Q 002905 172 PEMIEKVL---STEQDPSAKRNAFLMLFTCDQDR-------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE-- 239 (867)
Q Consensus 172 ~~ll~~lL---~~D~D~~v~~~A~~~L~ei~~~~-------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~-- 239 (867)
.+.|+..| +.|.++.++..+..++..+.... .++.|...+ .+.++..+...+..++.++...|..
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l---~~~~~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL---DSEDYNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH---SCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHhHHHhc
Confidence 23333222 37889999999998888875321 244444443 4456777888888888877654433
Q ss_pred -------HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-hHH----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 002905 240 -------KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTA----IRAAANTYSQLLLSQSDNNVKLIVLDRLNELR 307 (867)
Q Consensus 240 -------~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~~----lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~ 307 (867)
...++..+.+.+++.++.|+.+|+.++..+... +.. +..+...++.++ .++|+.+|..+++.|..+.
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 345677777788888999999999999876532 222 234555555554 6789999999999999999
Q ss_pred hhChhhHHHHHHhh----eecccCCCHHHHHHHHHHHhccCCCC--------cHHHHHHHHHHHHH----------Hhh-
Q 002905 308 SSHRDIMVDLIMDV----LRALNSPNLDIRRKTLDIVLELITPR--------NINEVVLMLKKEVV----------KTQ- 364 (867)
Q Consensus 308 ~~~p~~l~~~~~~i----l~~L~d~d~~IR~kaLelL~~Lv~~~--------Nv~~IV~~L~kel~----------~~~- 364 (867)
..+|..+.+|...+ +.++.+++..+|..+++.+..++... .+..++..|.+.+. ...
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 99998887765444 45678999999999999999998643 34456666654331 000
Q ss_pred cCCcc----CCHHHHHHHHHHHHHhHccCCc-cHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcc----cHHHHHH
Q 002905 365 SGELE----KNGEYRQMLIQAIHSCAIKFPE-VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK----LRVSIIT 435 (867)
Q Consensus 365 ~~~~d----~d~e~r~~lI~aI~~la~kf~~-~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~----lr~~il~ 435 (867)
+.+.+ .+..+|+.+..+++.++..+++ ....+++.+.+++.+.+..++..++..+..+.+..++ .-..++.
T Consensus 324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 00001 2335799999999999987664 3467888888889888888888999999988764432 2356777
Q ss_pred HHHHHhcccchHhHHHHHhhHhhccCCCCC------cHHHHHHHHHHhhC
Q 002905 436 RLLDNFYQIRAARVCTCALWIIGEYCQSLS------EVENGIATIKQCLG 479 (867)
Q Consensus 436 ~L~~~L~~i~~~~v~~~alWiLGEY~~~~~------~i~~~~~~i~~~l~ 479 (867)
.|+..+.+ ..+.++.+++|.+|.|+.... ....++..+...+.
T Consensus 404 ~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~ 452 (852)
T 4fdd_A 404 HLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452 (852)
T ss_dssp HHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 77777766 468899999999999987432 23344555554443
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.48 E-value=8.9e-11 Score=144.62 Aligned_cols=428 Identities=15% Similarity=0.117 Sum_probs=289.8
Q ss_pred cHHHHHHHh---cCCChHHHHHHHHHHHHHHhCCC-CCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch
Q 002905 18 IANEIKEAL---EGNDVPAKVDAMKKAIMLLLNGE-TLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (867)
Q Consensus 18 ~~~eIr~~L---~s~~~~~K~~alkklI~l~~~G~-d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E 93 (867)
.+++|.+.| .++|...+..|-+.+-.. ... +....+..++.. +.+.+..+|.++-+++...-+..= .++-++
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~--~~~p~~~~~l~~il~~-~~~~~~~vR~~a~~~Lkn~i~~~w-~~~~~~ 86 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQL--NQYPDFNNYLIFVLTK-LKSEDEPTRSLSGLILKNNVKAHF-QNFPNG 86 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHHHTTTSG-GGCCHH
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HhCCCHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHcc-CCCCHH
Confidence 455565555 477888888888877543 221 122245555552 367888999999998887632210 112123
Q ss_pred H-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc
Q 002905 94 M-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (867)
Q Consensus 94 m-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~---~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~ 169 (867)
. -.+-+.+.+-|.++++.+|..+..+++.|.. +.-.+.++|.+.+++.+.++.+|..|+.+++++++ ..+....
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~--~~~~~~~ 164 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICE--DSAEILD 164 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHH--HHTTHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--HhHHHhc
Confidence 2 4556777777899999999999999888853 34556688999999999999999999999999998 5554321
Q ss_pred ------chHHHHHHHH--ccCCChhHHHHHHHHHHhcchhh--H----H-HHHHHHhhhcCccchHHHHHHHHHHHHhhh
Q 002905 170 ------DAPEMIEKVL--STEQDPSAKRNAFLMLFTCDQDR--A----I-NYLLTHVDRVSEWGELLQMVVLELIRKVCR 234 (867)
Q Consensus 170 ------d~~~ll~~lL--~~D~D~~v~~~A~~~L~ei~~~~--a----l-~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~ 234 (867)
....++..++ ..+.++.|+.+|+.+|..+.... . + .++..++..+.+.++-.+..+++.|..++.
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 1223333322 27889999999999998765321 1 1 233333333455677778888888888877
Q ss_pred cCchh----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHHHc----------cC---
Q 002905 235 TNKGE----KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAP-------TAIRAAANTYSQLLL----------SQ--- 290 (867)
Q Consensus 235 ~~p~~----~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p-------~~lk~aa~~li~ll~----------~~--- 290 (867)
..|.. ...+++.+..++++.++.|+.+|+..+..+...+ ..+..+...++..+. .+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~e 324 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEG 324 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----
T ss_pred hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccc
Confidence 66543 3467888888889989999999999988886432 122334444444441 22
Q ss_pred --------CCHHHHHHHHHHHHHHHhhChh-hHHHHHHhheecccCCCHHHHHHHHHHHhccCCCC------cHHHHHHH
Q 002905 291 --------SDNNVKLIVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR------NINEVVLM 355 (867)
Q Consensus 291 --------sD~Nvk~ivL~~L~~L~~~~p~-~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~------Nv~~IV~~ 355 (867)
.+.++|..+...|..+....++ ++......+...+.++++.+|..++..+..++..- .+..+++.
T Consensus 325 d~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 325 GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3457899999888888765443 44444444556678999999999999999998643 23445554
Q ss_pred HHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccC-----CccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcc--
Q 002905 356 LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF-----PEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK-- 428 (867)
Q Consensus 356 L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf-----~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~-- 428 (867)
|.+ ..+ |.++.+|..+..+++.++.-. ......+++.|++.+.+.+..+...+...+..+.+..+.
T Consensus 405 l~~----~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l 477 (852)
T 4fdd_A 405 LIQ----CLS---DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477 (852)
T ss_dssp HHH----HTT---CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHH----HcC---CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh
Confidence 443 332 567899999999999988642 345678899999999988888888888888888764321
Q ss_pred --cHHHHHHHHHHHhcccchHh--HHHHHhhHhh
Q 002905 429 --LRVSIITRLLDNFYQIRAAR--VCTCALWIIG 458 (867)
Q Consensus 429 --lr~~il~~L~~~L~~i~~~~--v~~~alWiLG 458 (867)
.-..++..|+..+.+.+... +...+++.+.
T Consensus 478 ~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp GGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 23567778888776543322 3344555544
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.46 E-value=5.8e-12 Score=146.78 Aligned_cols=316 Identities=14% Similarity=0.138 Sum_probs=230.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCc----h---hhH-HHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhccCCCcccc
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNE----T---EII-EPLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~~----~---el~-e~L~~~V~~~L~d~-~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
+..+.+.|+++|+.+|-.|+..|.++.. + .++ ..++|.+.++|.+. ++.||..|+.++.++.. ..++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~--~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS--GTSAQT 166 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHHHH
Confidence 4566677889999999999999988732 2 122 23688999999997 99999999999999988 544322
Q ss_pred -----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhcCccchHHHHHHHHHHHHh
Q 002905 169 -----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKV 232 (867)
Q Consensus 169 -----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~ 232 (867)
..+.+.+-.+| .+.++.++..|+.+|..+..+. +++.|..++.. .++-++..++..|..+
T Consensus 167 ~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHH
Confidence 23344555656 6789999999999999886431 24455555543 5666788899999999
Q ss_pred hhcC-ch----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-hHHHHH-----HHHHHHHHHccCCCHHHHHHHHH
Q 002905 233 CRTN-KG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLD 301 (867)
Q Consensus 233 ~~~~-p~----~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~ 301 (867)
+... |. ....+++.|..+|.+.++.|+..|+.+|..+... +...+. +...++.++ .++++.++..++.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALR 321 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHH
Confidence 8654 32 2345788999999999999999999999999754 333332 345666665 5788999999999
Q ss_pred HHHHHHhhChhhHH-----HHHHhheecccCCCHHHHHHHHHHHhccCC--CCcHHH-----HHHHHHHHHHHhhcCCcc
Q 002905 302 RLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINE-----VVLMLKKEVVKTQSGELE 369 (867)
Q Consensus 302 ~L~~L~~~~p~~l~-----~~~~~il~~L~d~d~~IR~kaLelL~~Lv~--~~Nv~~-----IV~~L~kel~~~~~~~~d 369 (867)
.|..|....+...+ ..+..++.+|.+++..+|+.|+..+..++. +..+.. +++.|.+-+. +
T Consensus 322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~-------~ 394 (530)
T 1wa5_B 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE-------V 394 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-------H
T ss_pred HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-------c
Confidence 99999865544222 234556778899999999999999999985 233332 3344443332 2
Q ss_pred CCHHHHHHHHHHHHHhHccCCc---cH-----HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCc
Q 002905 370 KNGEYRQMLIQAIHSCAIKFPE---VA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNP 427 (867)
Q Consensus 370 ~d~e~r~~lI~aI~~la~kf~~---~a-----~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p 427 (867)
.+.++|..++.+|+.++....+ .. ..+++.|++++.+.++.+...++..+..++...+
T Consensus 395 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4679999999999999875433 11 2368889999998888888888888888887544
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.42 E-value=2.3e-11 Score=141.45 Aligned_cols=355 Identities=13% Similarity=0.126 Sum_probs=249.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCC--ch-h-----hHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhhccCCCccc
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLN--ET-E-----IIEPLIPSVLQNLQHRH-PYIRRNAILAVMAIYKLPQGEQL 167 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~--~~-e-----l~e~L~~~V~~~L~d~~-pyVRK~A~lal~kI~~l~~~p~l 167 (867)
.+..+.+-|+++|+.+|-.|++.|+++. .+ + +-..++|.+.++|.+.+ +.||..|+.|+.++.. ..++.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~~~~ 152 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS--GTSEN 152 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHHH
Confidence 3566777889999999999999998872 11 1 11236888899999887 9999999999999988 55543
Q ss_pred cc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhcCccchHHHHHHHHHHHH
Q 002905 168 LV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRK 231 (867)
Q Consensus 168 i~-----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~ 231 (867)
.. .+.+.+-.+| .+.++.++.+|+.+|..+..+. +++.|..++. ...++-.+..++..|..
T Consensus 153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--EHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--TTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 22 2344455555 7789999999999999986432 2334444442 34567788899999999
Q ss_pred hhhcCchh----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChH-HHHH-----HHHHHHHHHccCCCHHHHHHHHH
Q 002905 232 VCRTNKGE----KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPT-AIRA-----AANTYSQLLLSQSDNNVKLIVLD 301 (867)
Q Consensus 232 ~~~~~p~~----~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~-~lk~-----aa~~li~ll~~~sD~Nvk~ivL~ 301 (867)
++...|.. ....++.|..+|.+.++.|+..|+.+|..+...+. ..+. +...++.++ .++++.++.-++.
T Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 230 FCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALR 308 (528)
T ss_dssp HHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHH
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHH
Confidence 98765432 34578899999999999999999999999976543 2222 345677766 6778999999999
Q ss_pred HHHHHHhhChhhHH-----HHHHhheecccCC-CHHHHHHHHHHHhccCCC--CcHHH-----HHHHHHHHHHHhhcCCc
Q 002905 302 RLNELRSSHRDIMV-----DLIMDVLRALNSP-NLDIRRKTLDIVLELITP--RNINE-----VVLMLKKEVVKTQSGEL 368 (867)
Q Consensus 302 ~L~~L~~~~p~~l~-----~~~~~il~~L~d~-d~~IR~kaLelL~~Lv~~--~Nv~~-----IV~~L~kel~~~~~~~~ 368 (867)
.|..|....+...+ ..+..++.+|.++ +..+|+.|+..+..++.. ..+.. ++..|.+-+.
T Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~------- 381 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ------- 381 (528)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH-------
T ss_pred HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh-------
Confidence 99999875544322 1244566778888 999999999999998752 22222 2334443332
Q ss_pred cCCHHHHHHHHHHHHHhHcc-CCccH-----HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccH----------HH
Q 002905 369 EKNGEYRQMLIQAIHSCAIK-FPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR----------VS 432 (867)
Q Consensus 369 d~d~e~r~~lI~aI~~la~k-f~~~a-----~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr----------~~ 432 (867)
+.+.++|..++.+|+.++.. -+... ..+++.|+++|......+...++..+..+++..+... ..
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 461 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ 461 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHH
Confidence 23679999999999999875 23222 2467889999999888888888888888887544311 11
Q ss_pred ------HHHHHHHHhcccchHhHHHHHhhHhhccCCCCC
Q 002905 433 ------IITRLLDNFYQIRAARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 433 ------il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~ 465 (867)
.+.++... ..-.+++++..+.|++..|....+
T Consensus 462 ~i~~~~~~~~l~~L-~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 462 MIDEAEGLEKIENL-QSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCcc
Confidence 23333333 333567899999999988866543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.42 E-value=4.7e-11 Score=134.71 Aligned_cols=283 Identities=11% Similarity=0.087 Sum_probs=204.8
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHhhcCCc--hhhH-----HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc
Q 002905 97 ICQNLRNNLQHP-NEYIRGVTLRFLCRLNE--TEII-----EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 97 v~NsL~KDL~~p-Ne~IRglALr~Ls~I~~--~el~-----e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
++..|.+-|+++ |+.+|-.|+++|+++.. ++.. ..++|.+.++|.++++.||..|+.++.++.. ..++..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~--~~~~~~ 142 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG--DSTMCR 142 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc--CCHHHH
Confidence 456666777788 89999999999998864 3322 3478999999999999999999999999988 554322
Q ss_pred -----cchHHHHHHHHccCCChhHHHHHHHHHHhcchh-----------hHHHHHHHHhhhcCccchHHHHHHHHHHHHh
Q 002905 169 -----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD-----------RAINYLLTHVDRVSEWGELLQMVVLELIRKV 232 (867)
Q Consensus 169 -----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~-----------~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~ 232 (867)
..+.+.+-.+|..+.++.++.+|+.+|..+... .+++.|...+. ..++..+..++..++.+
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF---VSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHH
Confidence 133455556664468899999999999987622 24566666654 46788889999999999
Q ss_pred hhcCchhH-----HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH-HH-----HHHHHHHHHHccCCCHHHHHHHHH
Q 002905 233 CRTNKGEK-----GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-IR-----AAANTYSQLLLSQSDNNVKLIVLD 301 (867)
Q Consensus 233 ~~~~p~~~-----~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~-lk-----~aa~~li~ll~~~sD~Nvk~ivL~ 301 (867)
+...+... ...++.+..+|.+.++.|+..|+.+|..+...... .+ .+...++.++ +++++.+|.-++.
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~ 298 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACW 298 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHH
Confidence 87654432 23678889999999999999999999999764322 22 2455666665 5678999999999
Q ss_pred HHHHHHhhChhhHH-----HHHHhheecccCCCHHHHHHHHHHHhccCCC---CcHHHHHH-HHHHHHHHhhcCCccCCH
Q 002905 302 RLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELITP---RNINEVVL-MLKKEVVKTQSGELEKNG 372 (867)
Q Consensus 302 ~L~~L~~~~p~~l~-----~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~---~Nv~~IV~-~L~kel~~~~~~~~d~d~ 372 (867)
.|..|....+...+ ..+..++.+|.+++..+|+.+...+..++.. .++..++. .+...|....+ +.+.
T Consensus 299 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~ 375 (450)
T 2jdq_A 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT---VMDS 375 (450)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGG---SSCH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhc---CCCH
Confidence 99999865444332 3445567778899999999999999998743 44443332 12222333322 3478
Q ss_pred HHHHHHHHHHHHhHcc
Q 002905 373 EYRQMLIQAIHSCAIK 388 (867)
Q Consensus 373 e~r~~lI~aI~~la~k 388 (867)
++|..++.+|..++..
T Consensus 376 ~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 376 KIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.41 E-value=1.4e-10 Score=140.93 Aligned_cols=420 Identities=15% Similarity=0.112 Sum_probs=287.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCC--------CCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCC
Q 002905 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGET--------LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~G~d--------~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~ 91 (867)
+-|+..|.+++.++++.+++- +.....|.. .......+++ ++.|++...++-++.++.... .++ ..+
T Consensus 250 ~~~~~~~~~~~~~~~~~a~~a-lt~i~~g~~~~~~~~~~~~G~v~~li~-Ll~s~~~~~q~~A~~al~~aa-~~~--~~R 324 (810)
T 3now_A 250 EYIKDKLLAPDMESKVRVTVA-ITALLNGPLDVGNQVVAREGILQMILA-MATTDDELQQRVACECLIAAS-SKK--DKA 324 (810)
T ss_dssp HHHHHHHSSCCHHHHHHHHHH-HHHHHSSSHHHHHHHHHTTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHT-TSH--HHH
T ss_pred HHHHHHhccCChHhHHHHHHH-HHHHhcCCHHHHHHHHhccchHHHHHH-HhCCCCHHHHHHHHHHHHHHc-CCc--HHH
Confidence 347778889999999999864 455555642 1344556777 558899999988887777652 221 112
Q ss_pred chHH-HHHHHHHHhcCCCCHHHHHHHHHHhhcCCc--------hhh----HHHHHHHHHHhcCCC--ChHHHHHHHHHHH
Q 002905 92 PEMI-LICQNLRNNLQHPNEYIRGVTLRFLCRLNE--------TEI----IEPLIPSVLQNLQHR--HPYIRRNAILAVM 156 (867)
Q Consensus 92 ~Emi-Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~--------~el----~e~L~~~V~~~L~d~--~pyVRK~A~lal~ 156 (867)
.-++ .-+..|.+=++++++.+|..|+-.||+++. +.+ ++++++.+++.|.|+ ++-||+.|+.|+.
T Consensus 325 ~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLa 404 (810)
T 3now_A 325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404 (810)
T ss_dssp HTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 2221 224566666678899999999999999862 222 468899999999998 8999999999999
Q ss_pred HhhccCCCccc----ccc--hHHHHHHHHccCCChhHHHHHHHHHHhcchhh----------------------------
Q 002905 157 AIYKLPQGEQL----LVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR---------------------------- 202 (867)
Q Consensus 157 kI~~l~~~p~l----i~d--~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~---------------------------- 202 (867)
.+-. +++. +.+ +.+.+-.+| ...|+.+...|..+|..+....
T Consensus 405 yLS~---~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 405 YLTL---DAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHTT---SHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHhC---CcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 8765 3322 222 223333555 6789999999999999886410
Q ss_pred ---------------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHHcCCChHHHHHH
Q 002905 203 ---------------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLLNAPSTAVIYEC 262 (867)
Q Consensus 203 ---------------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~l-----i~~L~~lL~s~s~aV~~ea 262 (867)
+++.|..++ .+.+|-.|..+...|..++. +++.+..+ +++|..+|.+.++.++..|
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL---~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~A 556 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALA---KTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHA 556 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHH---TCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHH---cCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHH
Confidence 233444444 35678889999999999984 55555443 5889999999999999999
Q ss_pred HHHHHhcC--CChHH------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh----hHH-HHHHhheecccCCC
Q 002905 263 AGTLVSLS--SAPTA------IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD----IMV-DLIMDVLRALNSPN 329 (867)
Q Consensus 263 a~tL~~Ls--~~p~~------lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~----~l~-~~~~~il~~L~d~d 329 (867)
+.+|.++. .+|.. ...+..+|+.+|-.+++...++-++..|..|....++ +++ ..+..++.+|.+++
T Consensus 557 a~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~ 636 (810)
T 3now_A 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH 636 (810)
T ss_dssp HHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 99998873 34432 2346788899875444555678899999998864432 222 23455677788899
Q ss_pred HHHHHHHHHHHhccCCCCcH-HHHHH--HHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH------HHHHHH
Q 002905 330 LDIRRKTLDIVLELITPRNI-NEVVL--MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS------TVVHLL 400 (867)
Q Consensus 330 ~~IR~kaLelL~~Lv~~~Nv-~~IV~--~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~------~~v~~L 400 (867)
..||+.|++++.+|+..... ..++. ...+.|....+ ..+.+.|+.+..+|+.++.-.+.... ..++.|
T Consensus 637 ~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~---s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 637 LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE---DEDEETATACAGALAIITSVSVKCCEKILAIASWLDIL 713 (810)
T ss_dssp TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHH
Confidence 99999999999999875322 22221 01223333333 24678999999999998864444332 356699
Q ss_pred HHHHcCCCcccHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHhccc--chHhHHHHHhh
Q 002905 401 MDFLGDSNVASAIDVIIFVREIIEMNPKLRVS-----IITRLLDNFYQI--RAARVCTCALW 455 (867)
Q Consensus 401 l~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~-----il~~L~~~L~~i--~~~~v~~~alW 455 (867)
+++|..++..+...++..+.++....++.... +++.|++.+..- +.++++..++-
T Consensus 714 v~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~ 775 (810)
T 3now_A 714 HTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQ 775 (810)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHH
Confidence 99999998899999999999998766655443 355555555432 34445444433
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.41 E-value=1.6e-11 Score=138.75 Aligned_cols=353 Identities=14% Similarity=0.158 Sum_probs=237.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhccCCC----------
Q 002905 100 NLRNNLQHPNEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQH--RHPYIRRNAILAVMAIYKLPQG---------- 164 (867)
Q Consensus 100 sL~KDL~~pNe~IRglALr~Ls~I~~---~el~e~L~~~V~~~L~d--~~pyVRK~A~lal~kI~~l~~~---------- 164 (867)
.+...+.+||+-+|-.|-..|..+.. |+....|. ..+.+ .++.||..|+..+.+..+ ..
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~----~il~~~~~~~~vR~~a~~~Lk~~i~--~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELS----RVLANPGNSQVARVAAGLQIKNSLT--SKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCTTSCHHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHH----HHHHcCCCChHHHHHHHHHHHHhcc--ccchHHHHHHHh
Confidence 34456889999999999999998775 55444444 34433 478999999999999865 32
Q ss_pred --cccccc----hHHHHHHHHccCCChhHHHHHHHHHHhcchh--------hHHHHHHHHhhhcCcc--chHHHHHHHHH
Q 002905 165 --EQLLVD----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--------RAINYLLTHVDRVSEW--GELLQMVVLEL 228 (867)
Q Consensus 165 --p~li~d----~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~--------~al~~L~~~l~~i~~~--~p~lQ~~iL~l 228 (867)
+.+-++ +.+.+-..| .+.++.+ ..+..++..+... ..++.|...+. +. ++-.+...+..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l-~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~---~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTL-GTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVT---NPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHT-TCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH---CTTCCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHh-CCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhc---cCCCCHHHHHHHHHH
Confidence 111111 222232334 5666777 7776666665322 13455555543 33 56667788888
Q ss_pred HHHhhhcC-c----hhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhcCCC-h-----HHHHH-HHHHHHHHHccCCCHH
Q 002905 229 IRKVCRTN-K----GEKGKYIKIIISLLNAP--STAVIYECAGTLVSLSSA-P-----TAIRA-AANTYSQLLLSQSDNN 294 (867)
Q Consensus 229 l~~~~~~~-p----~~~~~li~~L~~lL~s~--s~aV~~eaa~tL~~Ls~~-p-----~~lk~-aa~~li~ll~~~sD~N 294 (867)
++.++... + .....+++.+...|++. ++.|+.+|++++..+... . ...+. +...+.+ +..+.|..
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 232 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTR 232 (462)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-HTTCSSHH
T ss_pred HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCCHH
Confidence 88877532 2 23466888889999988 788999999999875321 1 11112 2333333 45778999
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHH-h----heecccCCCHHHHHHHHHHHhccCCCC----------------------
Q 002905 295 VKLIVLDRLNELRSSHRDIMVDLIM-D----VLRALNSPNLDIRRKTLDIVLELITPR---------------------- 347 (867)
Q Consensus 295 vk~ivL~~L~~L~~~~p~~l~~~~~-~----il~~L~d~d~~IR~kaLelL~~Lv~~~---------------------- 347 (867)
+|-.+++.|..+...+|..+.+|.. . ++.++.+.+..+|..+++.+..++...
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 9999999999999888877665544 3 334567889999999999888776431
Q ss_pred -----cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc-cHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 002905 348 -----NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE-VASTVVHLLMDFLGDSNVASAIDVIIFVRE 421 (867)
Q Consensus 348 -----Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~-~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ 421 (867)
.+..++..|.+.+........+.+...|+.+..+++.++..++. ....+++.+...+.+.+..++..++..+..
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~ 392 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 12455665554433211001133457999999999999988874 235666777777888777788888899998
Q ss_pred HHHhCc-c----cHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCC
Q 002905 422 IIEMNP-K----LRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 422 ii~~~p-~----lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~ 465 (867)
+.+... + .-..++..++..+.+ ..+.++.+++|.+|.|+....
T Consensus 393 l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 393 ILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp TSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGG
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcc
Confidence 886322 1 124578888888876 568999999999999987654
No 19
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.41 E-value=6.9e-10 Score=135.59 Aligned_cols=440 Identities=13% Similarity=0.086 Sum_probs=287.2
Q ss_pred cHHHHHHHh-cCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC-CCcchHHHHHHHHHHHhhcCC---C-----
Q 002905 18 IANEIKEAL-EGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS-EDHTIQKLLLLYLEIIDKTDA---K----- 87 (867)
Q Consensus 18 ~~~eIr~~L-~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S-~d~~lKkL~Ylyl~~~~~~d~---d----- 87 (867)
.+.++-..+ .++|...|..|-+.+--+... +.+.++......+..+ .+...|.++-+++...-+..- +
T Consensus 5 ~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND--NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHcccCcCHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 455656666 788888888888777554332 2344455555533222 467889998887776521100 0
Q ss_pred --CC-CCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchh----hHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHh
Q 002905 88 --GR-VLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETE----IIEPLIPSVLQNLQHR-HPYIRRNAILAVMAI 158 (867)
Q Consensus 88 --g~-l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~e----l~e~L~~~V~~~L~d~-~pyVRK~A~lal~kI 158 (867)
.. +-+|. --+-+.+..-|.++++.+|..+.+.++.|...+ -.+.++|.+.+++.+. ++.+|..|+.++..+
T Consensus 83 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred hHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00 21222 344567777789999999999988888875433 3467899999999998 999999999999999
Q ss_pred hccCCCcc---cccchHHH---HHHHHccCC--ChhHHHHHHHHHHhcc---hhh-----HHHHHHHHhhh-cCccchHH
Q 002905 159 YKLPQGEQ---LLVDAPEM---IEKVLSTEQ--DPSAKRNAFLMLFTCD---QDR-----AINYLLTHVDR-VSEWGELL 221 (867)
Q Consensus 159 ~~l~~~p~---li~d~~~l---l~~lL~~D~--D~~v~~~A~~~L~ei~---~~~-----al~~L~~~l~~-i~~~~p~l 221 (867)
.+. .+++ +.+....+ +...| .+. ++.|+..|+.+|..+. .+. ...++...+.+ +...++-.
T Consensus 163 ~~~-~~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 240 (861)
T 2bpt_A 163 CES-ADPQSQALVSSSNNILIAIVQGA-QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240 (861)
T ss_dssp HHT-SSTTSSTTGGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHc-CChhhhHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHH
Confidence 872 2333 12233333 33444 555 8899999999988642 111 12344444332 33445556
Q ss_pred HHHHHHHHHHhhhcCchh----HH-HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCh----------------------H
Q 002905 222 QMVVLELIRKVCRTNKGE----KG-KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP----------------------T 274 (867)
Q Consensus 222 Q~~iL~ll~~~~~~~p~~----~~-~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p----------------------~ 274 (867)
+..+++.+..++...|.. .. .+++.+...+.+.+..|+.+|+..+..+.... .
T Consensus 241 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (861)
T 2bpt_A 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHH
Confidence 777888888776554432 22 56667777788888899999998877663221 1
Q ss_pred HHHHHHHHHHHHHcc------CCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCC
Q 002905 275 AIRAAANTYSQLLLS------QSDNNVKLIVLDRLNELRSSHR-DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR 347 (867)
Q Consensus 275 ~lk~aa~~li~ll~~------~sD~Nvk~ivL~~L~~L~~~~p-~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~ 347 (867)
.+..+...++..+.. +.++++|..+.+.|..+....+ .++......+...+.++++.+|..++..+..++..-
T Consensus 321 ~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC
Confidence 123344555555543 2346899999999998887544 344444555556688999999999999999998653
Q ss_pred c---HHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccC------CccHHHHHHHHHHHHcCCCcccHHHHHHH
Q 002905 348 N---INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF------PEVASTVVHLLMDFLGDSNVASAIDVIIF 418 (867)
Q Consensus 348 N---v~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf------~~~a~~~v~~Ll~lL~~~~~~v~~evi~~ 418 (867)
. +...+..+...+..... |.++.+|..++.+++.++... ++....+++.+++.+.+. ..+...+...
T Consensus 401 ~~~~~~~~l~~il~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~a 476 (861)
T 2bpt_A 401 DKVQRTYYVHQALPSILNLMN---DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWT 476 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 2 33334444444444433 457899999999999988653 335678999999999876 6666667777
Q ss_pred HHHHHHhCc--------ccHHHHHHHHHHHhcccc-hHhHHHHHhhHhhccCCCCC
Q 002905 419 VREIIEMNP--------KLRVSIITRLLDNFYQIR-AARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 419 l~~ii~~~p--------~lr~~il~~L~~~L~~i~-~~~v~~~alWiLGEY~~~~~ 465 (867)
+..+++..+ .....++..|+..+.+.. ++.++..+++.+|......+
T Consensus 477 l~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 477 IINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 777766421 123567888888886432 36788888888887755443
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.34 E-value=7.2e-09 Score=123.80 Aligned_cols=455 Identities=14% Similarity=0.091 Sum_probs=299.8
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCC------CCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCC
Q 002905 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGET------LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGR 89 (867)
Q Consensus 16 ~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d------~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~ 89 (867)
..-+..+.+.|.+++...+..+++-|-.+...... ....+..+++.+-.+++...++-+--.+..+...+ ++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~- 90 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EG- 90 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HH-
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hh-
Confidence 44678899999999998898888755555443321 12456667775534457888877665665553321 11
Q ss_pred CCchHH--HHHHHHHHhcCCCCHHHHHHHHHHhhcCCch------hhH-HHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002905 90 VLPEMI--LICQNLRNNLQHPNEYIRGVTLRFLCRLNET------EII-EPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 90 l~~Emi--Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~------el~-e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
+..+. =++..|.+=|+++++.+|..|+.+|+++... .+. .-.+|.+.+.|.+.++.++..|+.|+..+..
T Consensus 91 -~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 91 -LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp -HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 12221 1567788889999999999999999998532 122 4578999999999999999999989988875
Q ss_pred cCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHhhhcCccchHHHHHH
Q 002905 161 LPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDRVSEWGELLQMVV 225 (867)
Q Consensus 161 l~~~p~li-----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~----------al~~L~~~l~~i~~~~p~lQ~~i 225 (867)
..++.. ....+.+-.+|....+..++.+|..+|..+.... +++.|..++ ...++-.+..+
T Consensus 170 --~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll---~~~~~~~~~~a 244 (644)
T 2z6h_A 170 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL---TDPSQRLVQNC 244 (644)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTT---TCSCHHHHHHH
T ss_pred --cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHH---hcCCHHHHHHH
Confidence 343321 1234445556644445567777887777664321 233333333 34467778889
Q ss_pred HHHHHHhhhcCch--hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH-HH-----HHHHHHHHHHccCCC-HHHH
Q 002905 226 LELIRKVCRTNKG--EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-IR-----AAANTYSQLLLSQSD-NNVK 296 (867)
Q Consensus 226 L~ll~~~~~~~p~--~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~-lk-----~aa~~li~ll~~~sD-~Nvk 296 (867)
+..|..+++..+. .....++.|..+|.+.++.|+..|+.+|.++...+.. .+ .++..+++++...++ +.++
T Consensus 245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 9999998875432 2357889999999999999999999999999764322 21 145678888765454 7999
Q ss_pred HHHHHHHHHHHhhChh-------hH-HHHHHhheecccCCC-HHHHHHHHHHHhccCCCC-cHHH-----HHHHHHHHHH
Q 002905 297 LIVLDRLNELRSSHRD-------IM-VDLIMDVLRALNSPN-LDIRRKTLDIVLELITPR-NINE-----VVLMLKKEVV 361 (867)
Q Consensus 297 ~ivL~~L~~L~~~~p~-------~l-~~~~~~il~~L~d~d-~~IR~kaLelL~~Lv~~~-Nv~~-----IV~~L~kel~ 361 (867)
.-++..|..|...++. ++ ..-+..++++|.+++ ..+++.++.++.+++... |... ++..|.+-+.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 9999999999765442 11 123455667787764 799999999999987432 2211 2222332222
Q ss_pred Hhh---c------------CCccCCHHHHHHHHHHHHHhHccCCcc-----HHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 002905 362 KTQ---S------------GELEKNGEYRQMLIQAIHSCAIKFPEV-----ASTVVHLLMDFLGDSNVASAIDVIIFVRE 421 (867)
Q Consensus 362 ~~~---~------------~~~d~d~e~r~~lI~aI~~la~kf~~~-----a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ 421 (867)
... . .+...+.+++..++.+++.++. .+.. ...+++.|+++|.+..+.+...+...+.+
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 483 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 100 0 0001245788888999988773 2211 12457889999998888888888888888
Q ss_pred HHHhCcccHHH-----HHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcH-HH--HHHHHHHhhCCC
Q 002905 422 IIEMNPKLRVS-----IITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEV-EN--GIATIKQCLGEL 481 (867)
Q Consensus 422 ii~~~p~lr~~-----il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i-~~--~~~~i~~~l~~~ 481 (867)
+.. .++.+.. .+..|.+.+.+ .+++++..++|+++..+...+.. .. +++.+...+.+-
T Consensus 484 l~~-~~~~~~~i~~~g~l~~L~~ll~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 484 LAQ-DKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHT-SHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHc-CHHHHHHHHHcCChhHHHHHHcC-CCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 764 4554443 35566666655 56889999999999987766421 22 455666666543
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.34 E-value=2.2e-10 Score=133.33 Aligned_cols=317 Identities=12% Similarity=0.118 Sum_probs=230.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCC--cc---cc-cchHHHHHHHHccCC-ChhHHHHHHHHHHhcchh--
Q 002905 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG--EQ---LL-VDAPEMIEKVLSTEQ-DPSAKRNAFLMLFTCDQD-- 201 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~--p~---li-~d~~~ll~~lL~~D~-D~~v~~~A~~~L~ei~~~-- 201 (867)
..++.+.+.|.+.++.+|..|+.++.++.. .. |. ++ ..+.+.+-.+| .+. |+.++..|+.+|..+...
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~--~~~~~~~~~~~~~g~i~~Lv~~L-~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILS--REHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTC--CSSSCSHHHHHHTTCHHHHHHTT-STTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CCCCccHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCH
Confidence 347778889999999999999999999976 32 21 11 12344454566 554 899999999999988652
Q ss_pred ---------hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHH-----HHHHHHHHHcCCChHHHHHHHHHHH
Q 002905 202 ---------RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK-----YIKIIISLLNAPSTAVIYECAGTLV 267 (867)
Q Consensus 202 ---------~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~-----li~~L~~lL~s~s~aV~~eaa~tL~ 267 (867)
.+++.|..++. ..++.++..++..|..++..++..+.. .++.|..+|.+.++.|+..|+.+|.
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence 12455666655 357888999999999998876654433 5688999999988899999999999
Q ss_pred hcCCC--h----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHhheecccCCCHHHHHHH
Q 002905 268 SLSSA--P----TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKT 336 (867)
Q Consensus 268 ~Ls~~--p----~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~-----~~~~~il~~L~d~d~~IR~ka 336 (867)
.+... | .....+...++.++ .++|+.++..++..|..|....+...+ ..+..++.+|.+++..+|..+
T Consensus 241 ~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a 319 (530)
T 1wa5_B 241 NLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319 (530)
T ss_dssp HHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHH
Confidence 88632 1 12334566677765 678899999999999999876554332 334557778889999999999
Q ss_pred HHHHhccCCCC--cHH-----HHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH-----HHHHHHHHHHH
Q 002905 337 LDIVLELITPR--NIN-----EVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFL 404 (867)
Q Consensus 337 LelL~~Lv~~~--Nv~-----~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a-----~~~v~~Ll~lL 404 (867)
+..+..++... ... .+++.|.. ... +.+..+|..++.+|+.++...+... ..+++.|+++|
T Consensus 320 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~----lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL 392 (530)
T 1wa5_B 320 LRAVGNIVTGNDLQTQVVINAGVLPALRL----LLS---SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHH----HTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcchHHHHHH----HHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999998643 222 23333332 222 2468999999999999986433322 24577899999
Q ss_pred cCCCcccHHHHHHHHHHHHHhC-c--ccHH-----HHHHHHHHHhcccchHhHHHHHhhHhhccCC
Q 002905 405 GDSNVASAIDVIIFVREIIEMN-P--KLRV-----SIITRLLDNFYQIRAARVCTCALWIIGEYCQ 462 (867)
Q Consensus 405 ~~~~~~v~~evi~~l~~ii~~~-p--~lr~-----~il~~L~~~L~~i~~~~v~~~alWiLGEY~~ 462 (867)
.+....+...++..+..+.... | +... .++..|+..+.+ .+++++..++|.++.+..
T Consensus 393 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 393 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHH
Confidence 8888888899999999998753 3 3322 257788888765 468899999999987654
No 22
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.33 E-value=3.3e-10 Score=135.13 Aligned_cols=422 Identities=13% Similarity=0.114 Sum_probs=277.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHh---hcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH-
Q 002905 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRY---VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI- 95 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~---v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi- 95 (867)
-++-+.+.+++...|+-+- +|++...+.-+.+.+-+++. =+.++|+..+-++.-++..+ .. +||.
T Consensus 77 ~~vvkl~~s~~~~~Krl~Y---L~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i--~~------~e~~~ 145 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGY---LFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV--GS------REMAE 145 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHH---HHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--CC------HHHHH
T ss_pred HHHHHHhcCCCHHHHHHHH---HHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc--CC------HHHHH
Confidence 4556677887765544322 22333444445554444432 24688888888877777766 22 4563
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHhhcCC--chhhHH--HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc--
Q 002905 96 LICQNLRNNL--QHPNEYIRGVTLRFLCRLN--ETEIIE--PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL-- 167 (867)
Q Consensus 96 Lv~NsL~KDL--~~pNe~IRglALr~Ls~I~--~~el~e--~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l-- 167 (867)
-+...+++-| .|++||||-.|+-++.++- .|++++ .+++.+.++|.|++|.|+.+|+.++..|.. ..|+.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~--~~~~~~~ 223 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ--KNPEEFK 223 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HCHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH--hChHHHH
Confidence 4668899999 9999999999988888874 688888 899999999999999999999999999988 66653
Q ss_pred --ccchHHHHHHHHcc-CC-----------ChhHHHHHHHHHHhcchh---hHHH----HHHHHhhhcC-c--------c
Q 002905 168 --LVDAPEMIEKVLST-EQ-----------DPSAKRNAFLMLFTCDQD---RAIN----YLLTHVDRVS-E--------W 217 (867)
Q Consensus 168 --i~d~~~ll~~lL~~-D~-----------D~~v~~~A~~~L~ei~~~---~al~----~L~~~l~~i~-~--------~ 217 (867)
+|.+.+.+.+++.. +. ||-.+...+..|..+.+. .... .|..+++... . .
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~ 303 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHS 303 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 34444566665532 12 678888888888887652 1222 3333333211 0 0
Q ss_pred --chHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHccCCC
Q 002905 218 --GELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA---PTAIRAAANTYSQLLLSQSD 292 (867)
Q Consensus 218 --~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~---p~~lk~aa~~li~ll~~~sD 292 (867)
++-.....++++..+. .+|+.....++.|..+|.++++.++|-+..++..+... +..++.....++..+..++|
T Consensus 304 n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d 382 (621)
T 2vgl_A 304 NAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD 382 (621)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC
Confidence 1133334445554443 35666778889999999999999999999999888542 24555555555565533899
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHHHhhcCCccC
Q 002905 293 NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINEVVLMLKKEVVKTQSGELEK 370 (867)
Q Consensus 293 ~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~--~~Nv~~IV~~L~kel~~~~~~~~d~ 370 (867)
..||..+|+.|..+.. +.-+...+..+...+.+.|.++|+.++.-+..++. +.+.+..++.|.+-+...
T Consensus 383 ~~Ir~~aL~lL~~l~~--~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~------- 453 (621)
T 2vgl_A 383 VSVRQRAVDLLYAMCD--RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA------- 453 (621)
T ss_dssp HHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-------
T ss_pred HhHHHHHHHHHHHHcC--hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh-------
Confidence 9999999999999874 33345555556666677899999998888777764 366777888887554432
Q ss_pred CHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcc--cHHHHHHHHHHHHHh---CcccH-HHHHHHHHHHhccc
Q 002905 371 NGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVA--SAIDVIIFVREIIEM---NPKLR-VSIITRLLDNFYQI 444 (867)
Q Consensus 371 d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~--v~~evi~~l~~ii~~---~p~lr-~~il~~L~~~L~~i 444 (867)
+..+..+++..+..+..+.|..-...+..|.+++.+.... +..-++..+.+.... .|... ...+..+.+.+..
T Consensus 454 ~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~- 532 (621)
T 2vgl_A 454 GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHL- 532 (621)
T ss_dssp GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTT-
T ss_pred cccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhcc-
Confidence 2346777888888888888988888888999999876422 222223555555432 22111 1345555554433
Q ss_pred chHhHHHHHhhHhhccCCCCC
Q 002905 445 RAARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 445 ~~~~v~~~alWiLGEY~~~~~ 465 (867)
.++.++..++-.+..+....+
T Consensus 533 ~~~~v~~~~Lta~~Kl~~~~p 553 (621)
T 2vgl_A 533 CSVPTRALLLSTYIKFVNLFP 553 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHHHHHHHCh
Confidence 234555555555555443333
No 23
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.31 E-value=6.9e-10 Score=142.01 Aligned_cols=434 Identities=13% Similarity=0.161 Sum_probs=282.4
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCC-C-----CCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCC
Q 002905 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGE-T-----LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGR 89 (867)
Q Consensus 16 ~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~-d-----~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~ 89 (867)
...+..+-+.+.++|...|..|+..+.-...... . ...+...+++ .+.+++...|+.+...+..+.+.-++
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~-~L~d~~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILK-LLEDKNGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHTTSCH--
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhCCH--
Confidence 3467888899999999999999888765443221 1 1245666777 45789999999999988887543221
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC---chh---------hHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Q 002905 90 VLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN---ETE---------IIEPLIPSVLQNLQ-HRHPYIRRNAILAVM 156 (867)
Q Consensus 90 l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~---~~e---------l~e~L~~~V~~~L~-d~~pyVRK~A~lal~ 156 (867)
+.+--+.+.+.+.|.++++.+|..|.+.|+.+. .++ ..+.++|.+.+++. +.++.+|..|+.++.
T Consensus 82 --~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 82 --YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp --HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 223356688888899999999999999888764 222 57889999999998 589999999999999
Q ss_pred HhhccCCCcccccchHHHHHHHH--ccCCChhHHHHHHHHHHhcchhh-------HHHHHHHHhhhcCccchHHHHHHHH
Q 002905 157 AIYKLPQGEQLLVDAPEMIEKVL--STEQDPSAKRNAFLMLFTCDQDR-------AINYLLTHVDRVSEWGELLQMVVLE 227 (867)
Q Consensus 157 kI~~l~~~p~li~d~~~ll~~lL--~~D~D~~v~~~A~~~L~ei~~~~-------al~~L~~~l~~i~~~~p~lQ~~iL~ 227 (867)
.+... .++.+.|..++++..++ +.+.++.|+..|+.+|..+.... .++.|...+..-.. +-....+++
T Consensus 160 ~~~~~-~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~--~~~r~~a~~ 236 (1230)
T 1u6g_C 160 DMLSR-QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS--MSTTRTYIQ 236 (1230)
T ss_dssp HHHHH-TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS--SCSCTTHHH
T ss_pred HHHHH-hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc--hhHHHHHHH
Confidence 98862 23344444455554432 26888999999999888765321 24555555433211 112233455
Q ss_pred HHHHhhhcCch----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC---CC--hHHHHHHHHHHHHHHcc---------
Q 002905 228 LIRKVCRTNKG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLS---SA--PTAIRAAANTYSQLLLS--------- 289 (867)
Q Consensus 228 ll~~~~~~~p~----~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls---~~--p~~lk~aa~~li~ll~~--------- 289 (867)
.+..++..-|. ....+++.+...++..++.|+..+..++..+. +. ...+..+...+++.+..
T Consensus 237 ~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d 316 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE 316 (1230)
T ss_dssp HHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccc
Confidence 55544433221 23567888888888877777766666655432 11 11333333333332210
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHHHhhChhhHHHHHHh----heecccCCCHHHHHHHHH
Q 002905 290 ---------------------------QSDNNVKLIVLDRLNELRSSHRDIMVDLIMD----VLRALNSPNLDIRRKTLD 338 (867)
Q Consensus 290 ---------------------------~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~----il~~L~d~d~~IR~kaLe 338 (867)
+..+.+|..+++.+..+....|+.+.++... ++..+.|++..||..+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~ 396 (1230)
T 1u6g_C 317 DEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFH 396 (1230)
T ss_dssp ----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHH
T ss_pred ccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1124679999999999988777656555433 445567889999999999
Q ss_pred HHhccCCC---------------------CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC----ccH
Q 002905 339 IVLELITP---------------------RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP----EVA 393 (867)
Q Consensus 339 lL~~Lv~~---------------------~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~----~~a 393 (867)
.+..++.. .-+...++.+...+.+... +.+..+|..++.+++.++...+ +..
T Consensus 397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~---~~~~~vr~~~~~~L~~l~~~~~~~l~~~l 473 (1230)
T 1u6g_C 397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK---EKSVKTRQCCFNMLTELVNVLPGALTQHI 473 (1230)
T ss_dssp HHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHSTTTTGGGH
T ss_pred HHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHchhhhHHHH
Confidence 87665531 1122333333333333232 4567899999999999887654 345
Q ss_pred HHHHHHHHHHHcCCCc--ccHHHHHHHHHHHHHhC-cc-c---HHHHHHHHHHHhcccchHhHHHHHhhHhhccC
Q 002905 394 STVVHLLMDFLGDSNV--ASAIDVIIFVREIIEMN-PK-L---RVSIITRLLDNFYQIRAARVCTCALWIIGEYC 461 (867)
Q Consensus 394 ~~~v~~Ll~lL~~~~~--~v~~evi~~l~~ii~~~-p~-l---r~~il~~L~~~L~~i~~~~v~~~alWiLGEY~ 461 (867)
..+++.+++.|.+... .+..+++..+..++... |+ + -..++..|+..+.+ +...++..+++.+|+.+
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d-~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD-PFYKITSEALLVTQQLV 547 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHH
Confidence 7888999999998764 67778888888887643 44 2 22456666666665 44566666777776554
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.30 E-value=1.6e-09 Score=125.83 Aligned_cols=315 Identities=12% Similarity=0.105 Sum_probs=228.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-cccc-----chHHHHHHHHccCCC-hhHHHHHHHHHHhcchhh---
Q 002905 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLV-----DAPEMIEKVLSTEQD-PSAKRNAFLMLFTCDQDR--- 202 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~-----d~~~ll~~lL~~D~D-~~v~~~A~~~L~ei~~~~--- 202 (867)
+|.+.+.|.+.++.+|..|+.++.++.. ..+ ..+. .+.+.+-.+| .+.| +.++..|+.+|..+....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s--~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLS--IERSPPIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHT--CSSSCCHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCCCchHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 6778888999999999999999999976 332 1111 2334444566 4554 999999999999886531
Q ss_pred --------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHH-cCCChHHHHHHHHHHHh
Q 002905 203 --------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLL-NAPSTAVIYECAGTLVS 268 (867)
Q Consensus 203 --------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~l-----i~~L~~lL-~s~s~aV~~eaa~tL~~ 268 (867)
+++.|..++. ..++-++..++..|..++..++..+..+ +..|..+| .+.++.|+..|+.+|..
T Consensus 153 ~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLG---SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3555555554 4567789999999999988766655443 56778888 56778899999999998
Q ss_pred cCCC-h----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHhheecccCCCHHHHHHHHH
Q 002905 269 LSSA-P----TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLD 338 (867)
Q Consensus 269 Ls~~-p----~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~-----~~~~~il~~L~d~d~~IR~kaLe 338 (867)
+... | .....+...++.++ .++|+.++.-++..|..+....+...+ ..+..++.+|.+++..++..++.
T Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 230 FCRGKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp HHCSSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 8543 1 22334666677765 678999999999999999865443322 23556778899999999999999
Q ss_pred HHhccCCCC--cHHH-----HHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH-----HHHHHHHHHHcC
Q 002905 339 IVLELITPR--NINE-----VVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS-----TVVHLLMDFLGD 406 (867)
Q Consensus 339 lL~~Lv~~~--Nv~~-----IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~-----~~v~~Ll~lL~~ 406 (867)
.|..++... .... ++..|.+-+.. ..+..++..++.+|+.++...+.... .+++.|+++|.+
T Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~------~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~ 382 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ------NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 382 (528)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS------CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC------CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 999998733 2222 24444433321 12689999999999999864332221 456789999998
Q ss_pred CCcccHHHHHHHHHHHHHh-CcccHHH-----HHHHHHHHhcccchHhHHHHHhhHhhccC
Q 002905 407 SNVASAIDVIIFVREIIEM-NPKLRVS-----IITRLLDNFYQIRAARVCTCALWIIGEYC 461 (867)
Q Consensus 407 ~~~~v~~evi~~l~~ii~~-~p~lr~~-----il~~L~~~L~~i~~~~v~~~alWiLGEY~ 461 (867)
....+..+++..+..+... .|+.... ++..|+..+.+ .+++++..++|.++...
T Consensus 383 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 383 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENIL 442 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 8888899999999999877 5655443 56778888776 56789999999988653
No 25
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.30 E-value=1.2e-08 Score=124.76 Aligned_cols=401 Identities=11% Similarity=0.093 Sum_probs=253.8
Q ss_pred CCCchhHHHHHhhcCCC-CcchHHHHHHHHHHHhh-cCCCCC-CCchHHHHHHHHHHhcCCC--CHHHHHHHHHHhhcCC
Q 002905 50 TLPQLFITIVRYVLPSE-DHTIQKLLLLYLEIIDK-TDAKGR-VLPEMILICQNLRNNLQHP--NEYIRGVTLRFLCRLN 124 (867)
Q Consensus 50 d~s~l~~~VIk~v~~S~-d~~lKkL~Ylyl~~~~~-~d~dg~-l~~EmiLv~NsL~KDL~~p--Ne~IRglALr~Ls~I~ 124 (867)
.-+.++..++. .+.++ +...|..+...+..+.+ ..++.+ +.+..--+...+.+-+.++ ++.+|..|+++++.+.
T Consensus 131 ~w~~ll~~L~~-~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 131 AWPELMKIMVD-NTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp CCHHHHHHHHH-HTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 44667888887 45666 77777776555554433 222110 2233334556777778887 8999999999998742
Q ss_pred ---chh-----hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-----chHHHHHHHHccCCChhHHHHH
Q 002905 125 ---ETE-----IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNA 191 (867)
Q Consensus 125 ---~~e-----l~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-----d~~~ll~~lL~~D~D~~v~~~A 191 (867)
... -.+.+++.+.+.+.+.++-||+.|+.++.++.. ..|+.+. .+.+++...+ .|.|..++..|
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~l~~~l~~~~~~~~-~~~~~~vr~~a 286 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS--KYYTFMKPYMEQALYALTIATM-KSPNDKVASMT 286 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--HHGGGCHHHHHHTHHHHHHHHT-TCSSHHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHH
Confidence 111 124578888888999999999999999999988 5554332 3333333444 78899999999
Q ss_pred HHHHHhcchhh--------------------HHHHHH----HHhhhcCc------cchH-HHHHHHHHHHHhhhcCc-hh
Q 002905 192 FLMLFTCDQDR--------------------AINYLL----THVDRVSE------WGEL-LQMVVLELIRKVCRTNK-GE 239 (867)
Q Consensus 192 ~~~L~ei~~~~--------------------al~~L~----~~l~~i~~------~~p~-lQ~~iL~ll~~~~~~~p-~~ 239 (867)
+..+..+.... ...++. .++..+.. -+.| .+....+.+..++...+ ..
T Consensus 287 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~ 366 (861)
T 2bpt_A 287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhH
Confidence 98887765431 011111 12222221 1223 34566667766654332 33
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hHHH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC---
Q 002905 240 KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTAI----RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH--- 310 (867)
Q Consensus 240 ~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~~l----k~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~--- 310 (867)
...+++.+.+.+++.+..++..|+.++..+... +..+ ..+...++..+ +++++.+|..++..+..+....
T Consensus 367 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 567888888889998989999999999998753 2333 33444444544 6778999999998888887531
Q ss_pred ---hhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCC----------CcHHHHHHHHHHHHHHhhcCCccCCHHHHHH
Q 002905 311 ---RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP----------RNINEVVLMLKKEVVKTQSGELEKNGEYRQM 377 (867)
Q Consensus 311 ---p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~----------~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~ 377 (867)
+..+.+.+..++..+.++ +.+|..+...+..++.. .-+..+++.|.+-+... +.+..+|..
T Consensus 446 ~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~-----d~~~~vr~~ 519 (861)
T 2bpt_A 446 IDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI-----DNEFNARAS 519 (861)
T ss_dssp SCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS-----CCGGGHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc-----CcchHHHHH
Confidence 345666677777788876 88999888877665531 23455666555443211 334689999
Q ss_pred HHHHHHHhHccCCccH----HHHHHHHHHHHcCC---------------CcccHHHHHHHHHHHHHhCcc----cHHHHH
Q 002905 378 LIQAIHSCAIKFPEVA----STVVHLLMDFLGDS---------------NVASAIDVIIFVREIIEMNPK----LRVSII 434 (867)
Q Consensus 378 lI~aI~~la~kf~~~a----~~~v~~Ll~lL~~~---------------~~~v~~evi~~l~~ii~~~p~----lr~~il 434 (867)
++.+++.++...+... ..+++.+++.+... ...+...++..+..+++..+. .-..++
T Consensus 520 a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 599 (861)
T 2bpt_A 520 AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM 599 (861)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred HHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999998766543 34445555555432 122334556677777765443 234567
Q ss_pred HHHHHHhcccchHhHHHHHhhHhhccC
Q 002905 435 TRLLDNFYQIRAARVCTCALWIIGEYC 461 (867)
Q Consensus 435 ~~L~~~L~~i~~~~v~~~alWiLGEY~ 461 (867)
..++..+.+-..+.++..+++.+|..+
T Consensus 600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~ 626 (861)
T 2bpt_A 600 GLFFRLLEKKDSAFIEDDVFYAISALA 626 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCcHHHHHHHHHHHHH
Confidence 777777755322156666666666543
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.28 E-value=1e-09 Score=126.62 Aligned_cols=348 Identities=11% Similarity=0.124 Sum_probs=234.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchh-----hH--HHHHHHHHHhcCC-CChHHHHHHHHHHHHhhccCCCcccc
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETE-----II--EPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~e-----l~--e~L~~~V~~~L~d-~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
++..|.+-|+++++.+|..|+..|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++.++.. . ++..
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~--~-~~~~ 94 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--H-REGL 94 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--S-HHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--C-chhH
Confidence 4677777888999999999999999985321 22 2467788888864 589999999999999866 2 3222
Q ss_pred c-----chHHHHHHHHccCCChhHHHHHHHHHHhcchh-----------hHHHHHHHHhhhcCccchHHHHHHHHHHHHh
Q 002905 169 V-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD-----------RAINYLLTHVDRVSEWGELLQMVVLELIRKV 232 (867)
Q Consensus 169 ~-----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~-----------~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~ 232 (867)
. ...+.+-.+| .+.|+.++..|+.+|..+... .+++.|..++. ..++-.+......+..+
T Consensus 95 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 95 LAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHHHH
Confidence 1 1233444555 788999999999999988543 12445555554 34555677777788888
Q ss_pred hhcCchhHHH-----HHHHHHHHHcCCChH-HHHHHHHHHHhcCCChHHHH-----HHHHHHHHHHccCCCHHHHHHHHH
Q 002905 233 CRTNKGEKGK-----YIKIIISLLNAPSTA-VIYECAGTLVSLSSAPTAIR-----AAANTYSQLLLSQSDNNVKLIVLD 301 (867)
Q Consensus 233 ~~~~p~~~~~-----li~~L~~lL~s~s~a-V~~eaa~tL~~Ls~~p~~lk-----~aa~~li~ll~~~sD~Nvk~ivL~ 301 (867)
+..+++.+.. .++.+..+|.+.++. +...++.+|..++..+.... .+...++.++ .++++.++.-++.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHH
Confidence 7766655433 356777788776554 66667788888876553222 2345566655 5668899999999
Q ss_pred HHHHHHhhChh--hHHHHHHhheecccCCCHHHHHHHHHHHhccCCCC--cHHH-----HHHHHHHHHHHhhcCCccCCH
Q 002905 302 RLNELRSSHRD--IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR--NINE-----VVLMLKKEVVKTQSGELEKNG 372 (867)
Q Consensus 302 ~L~~L~~~~p~--~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~--Nv~~-----IV~~L~kel~~~~~~~~d~d~ 372 (867)
.|..+....+. .....+..+++.|.++|..+|..+..++..|+... +... .++.|.+-+... +.+.
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-----~~~~ 324 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-----GDRE 324 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-----TTCH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc-----CCHH
Confidence 99998764332 23455666778889999999999999999998743 3332 234444333321 1247
Q ss_pred HHHHHHHHHHHHhHccCCccH--------HHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHHhCcccHH-----HHHHHHH
Q 002905 373 EYRQMLIQAIHSCAIKFPEVA--------STVVHLLMDFLGDSNV-ASAIDVIIFVREIIEMNPKLRV-----SIITRLL 438 (867)
Q Consensus 373 e~r~~lI~aI~~la~kf~~~a--------~~~v~~Ll~lL~~~~~-~v~~evi~~l~~ii~~~p~lr~-----~il~~L~ 438 (867)
+++..++.+++.++...|... ...++.|+++|.+..+ .+..+++..++++... |+.+. .++..|+
T Consensus 325 ~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~ 403 (529)
T 1jdh_A 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLV 403 (529)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHH
Confidence 899999999999986555421 1347788999988764 7888888999998853 43333 3577888
Q ss_pred HHhcccchHhHHHHHhhHhhc
Q 002905 439 DNFYQIRAARVCTCALWIIGE 459 (867)
Q Consensus 439 ~~L~~i~~~~v~~~alWiLGE 459 (867)
+.+.+ .++++++.++|.++.
T Consensus 404 ~ll~~-~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 404 QLLVR-AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHH-HHHHHC---------
T ss_pred HHHHH-HhHHHHHHHhcccCc
Confidence 88775 567899999999987
No 27
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.28 E-value=2.1e-09 Score=131.63 Aligned_cols=437 Identities=11% Similarity=0.102 Sum_probs=274.9
Q ss_pred HHHHHhcCC--ChHHHHHHHHHHHHHHh-CCCCCC-----chhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCc
Q 002905 21 EIKEALEGN--DVPAKVDAMKKAIMLLL-NGETLP-----QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (867)
Q Consensus 21 eIr~~L~s~--~~~~K~~alkklI~l~~-~G~d~s-----~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~ 92 (867)
-+.+.+.++ +...+..+++-+-.+.. .|..+. ..++.++...+.+.+..+|+.++-.+..+....++ .+.+
T Consensus 176 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~ 254 (876)
T 1qgr_A 176 AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMET 254 (876)
T ss_dssp HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG-GCHH
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH-HHHH
Confidence 355666666 45666677754433321 121111 12444444355677888888887777766544432 1222
Q ss_pred hHH-HHHHHHHHhcCCCCHHHHHHHHHHhhcCCchh---------------------------hHHHHHHHHHHhcC---
Q 002905 93 EMI-LICQNLRNNLQHPNEYIRGVTLRFLCRLNETE---------------------------IIEPLIPSVLQNLQ--- 141 (867)
Q Consensus 93 Emi-Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~e---------------------------l~e~L~~~V~~~L~--- 141 (867)
.+. -+...+.+-++++++.+|..|+.+++.+.... .++.++|.+.+.+.
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 232 35566667778999999999999988775321 23567777777774
Q ss_pred ----CCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh----hHHHHHH----H
Q 002905 142 ----HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD----RAINYLL----T 209 (867)
Q Consensus 142 ----d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~----~al~~L~----~ 209 (867)
+.+..||+.|+.++..+... ..+..++.+.+.+...| .|.++.++.+|+.+|..+... .-.+++. .
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~ 412 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATC-CEDDIVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHH-HGGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHH-CcHhhHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45789999999999998872 22344455555666655 789999999999999887532 1112222 2
Q ss_pred HhhhcCccchHHHHHHHHHHHHhhhcCc------hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-----------
Q 002905 210 HVDRVSEWGELLQMVVLELIRKVCRTNK------GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA----------- 272 (867)
Q Consensus 210 ~l~~i~~~~p~lQ~~iL~ll~~~~~~~p------~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~----------- 272 (867)
++..+.+.++..+...+..+.+++...+ .....+++.+...|.+. +.|+..|+.++..+...
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~ 491 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ 491 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 2333456778888899999998876532 34567888888888774 77888888888765311
Q ss_pred --------hHHHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHhhChhhHHHH----HHhheecc-----------cC
Q 002905 273 --------PTAIRAAANTYSQLLLSQ--SDNNVKLIVLDRLNELRSSHRDIMVDL----IMDVLRAL-----------NS 327 (867)
Q Consensus 273 --------p~~lk~aa~~li~ll~~~--sD~Nvk~ivL~~L~~L~~~~p~~l~~~----~~~il~~L-----------~d 327 (867)
...+..+...++..+... .+.++|..+++.+..+....+.-+.++ ...++..+ ++
T Consensus 492 ~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (876)
T 1qgr_A 492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST 571 (876)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCST
T ss_pred ccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 123455666677766432 246899999999999887543322222 22222222 33
Q ss_pred CC----HHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc----cCCccHHHH
Q 002905 328 PN----LDIRRKTLDIVLELITPRN---INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI----KFPEVASTV 396 (867)
Q Consensus 328 ~d----~~IR~kaLelL~~Lv~~~N---v~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~----kf~~~a~~~ 396 (867)
+| ..+|..++..+..++..-. +...+..+...+....... .....++..++.+|+.++. .|.+....+
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQST-AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhc-cCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44 4577778888777765433 2222233333333222210 0013688889999988775 366666788
Q ss_pred HHHHHHHHcCC-CcccHHHHHHHHHHHHHhCc-ccH---HHHHHHHHHHhccc-chHhHHHHHhhHhhccCC
Q 002905 397 VHLLMDFLGDS-NVASAIDVIIFVREIIEMNP-KLR---VSIITRLLDNFYQI-RAARVCTCALWIIGEYCQ 462 (867)
Q Consensus 397 v~~Ll~lL~~~-~~~v~~evi~~l~~ii~~~p-~lr---~~il~~L~~~L~~i-~~~~v~~~alWiLGEY~~ 462 (867)
++.+...+.+. ...++..++..+..++...+ .++ ..++..|++.+.+- .+.+++..++|.+|..+.
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 89999999886 66777788888888876533 232 35666667766542 235688999999987754
No 28
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.27 E-value=5.3e-10 Score=118.90 Aligned_cols=252 Identities=12% Similarity=0.073 Sum_probs=180.6
Q ss_pred hHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC-chhhHHHHH
Q 002905 55 FITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-ETEIIEPLI 133 (867)
Q Consensus 55 ~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~-~~el~e~L~ 133 (867)
....++ .+.+++...|..+...+..+. + ++ ++..+.+-|+|+++.+|..|+..|+.+. .++.++.++
T Consensus 25 i~~L~~-~L~~~~~~vr~~A~~~L~~~~--~------~~---~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~ 92 (280)
T 1oyz_A 25 DDELFR-LLDDHNSLKRISSARVLQLRG--G------QD---AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVF 92 (280)
T ss_dssp HHHHHH-HTTCSSHHHHHHHHHHHHHHC--C------HH---HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHH
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHccC--C------ch---HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHH
Confidence 445566 457778888777666655541 1 22 4577888899999999999999999998 455566677
Q ss_pred HHHH-HhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhh
Q 002905 134 PSVL-QNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVD 212 (867)
Q Consensus 134 ~~V~-~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~ 212 (867)
+.+. .++.|+++.||..|+.++.++.. ..+...+.+.+.+..+| .|.|+.|+..|+.+|..+....+++.|...++
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~--~~~~~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~ 169 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVINDKATIPLLINLLK 169 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc--cCCcccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 7776 36789999999999999999986 44444444555665655 89999999999999999987777888777765
Q ss_pred hcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCC
Q 002905 213 RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSD 292 (867)
Q Consensus 213 ~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD 292 (867)
+.++..+..++..+..+...++ ..++.+..+|++.++.|+.+|+.+|..+.. +. +...++..+ ++
T Consensus 170 ---d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-~~----~~~~L~~~l-~d-- 234 (280)
T 1oyz_A 170 ---DPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-KR----VLSVLCDEL-KK-- 234 (280)
T ss_dssp ---CSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-GG----GHHHHHHHH-TS--
T ss_pred ---CCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-Hh----hHHHHHHHh-cC--
Confidence 4677788888888888754333 567788888888999999999999999874 33 344555555 33
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHhheecc-cCCCHHHHHHHHHHHhc
Q 002905 293 NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRAL-NSPNLDIRRKTLDIVLE 342 (867)
Q Consensus 293 ~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L-~d~d~~IR~kaLelL~~ 342 (867)
+++|..+...|..+.. +.++. . +...+ +++|..++..+++.+..
T Consensus 235 ~~vr~~a~~aL~~i~~--~~~~~-~---L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 235 NTVYDDIIEAAGELGD--KTLLP-V---LDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp SSCCHHHHHHHHHHCC--GGGHH-H---HHHHHTTSSCCHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHhcCc--hhhhH-H---HHHHHhcCCCcHHHHHHHHHhhc
Confidence 3488888888888753 44332 2 23333 34567788887777653
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.26 E-value=5.7e-09 Score=127.77 Aligned_cols=447 Identities=14% Similarity=0.101 Sum_probs=285.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCC------CCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCc
Q 002905 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGE------TLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (867)
Q Consensus 19 ~~eIr~~L~s~~~~~K~~alkklI~l~~~G~------d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~ 92 (867)
+..+.+.|.+++...|..+++-|-.+..... +.+.++..+++.+-.+++...|+-+--.+..+... +++ +.
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~--~~ 228 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REG--LL 228 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHH--HH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh--HH
Confidence 4556777788888888888865554443221 12245666676443345888888776666665432 111 12
Q ss_pred hHH--HHHHHHHHhcCCCCHHHHHHHHHHhhcCCch--h----hH-HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCC
Q 002905 93 EMI--LICQNLRNNLQHPNEYIRGVTLRFLCRLNET--E----II-EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ 163 (867)
Q Consensus 93 Emi--Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~--e----l~-e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~ 163 (867)
.+. =++..|.+=|+++++.+|..|+.+|+++... + +. .-.+|.+.+.|.+.++.||..|+.|+..+.. .
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~ 306 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 306 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--C
Confidence 221 2556777888999999999999999998532 1 11 3467889999999999999999988886654 3
Q ss_pred Ccccc-----cchHHHHHHHHccCCChh-HHHHHHHHHHhcch--hh--------HHHHHHHHhhhcCccchHHHHHHHH
Q 002905 164 GEQLL-----VDAPEMIEKVLSTEQDPS-AKRNAFLMLFTCDQ--DR--------AINYLLTHVDRVSEWGELLQMVVLE 227 (867)
Q Consensus 164 ~p~li-----~d~~~ll~~lL~~D~D~~-v~~~A~~~L~ei~~--~~--------al~~L~~~l~~i~~~~p~lQ~~iL~ 227 (867)
+++.. .+..+.+-++| .+.++. ...+|..+|..++. +. +++.|..+ +...++-.+..++.
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~l---L~~~~~~~~~~a~~ 382 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH---LTDPSQRLVQNCLW 382 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGG---TTCSCHHHHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHH---HcCCchHHHHHHHH
Confidence 33221 12344444556 444443 44455555554432 11 12333333 34456667888899
Q ss_pred HHHHhhhcCch--hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHH------HHHHHHHHHHccCCCH-HHHHH
Q 002905 228 LIRKVCRTNKG--EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIR------AAANTYSQLLLSQSDN-NVKLI 298 (867)
Q Consensus 228 ll~~~~~~~p~--~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk------~aa~~li~ll~~~sD~-Nvk~i 298 (867)
.+..++...+. ....+++.|..+|.+.++.|+..|+.+|.++...+...+ .+...+++++...+++ +++..
T Consensus 383 ~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~ 462 (780)
T 2z6g_A 383 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462 (780)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHH
Confidence 99988865432 245789999999999999999999999999976543222 2456788888654554 89999
Q ss_pred HHHHHHHHHhhChhh------H--HHHHHhheecccCCC-HHHHHHHHHHHhccCCC----------CcHHHHHHHHHHH
Q 002905 299 VLDRLNELRSSHRDI------M--VDLIMDVLRALNSPN-LDIRRKTLDIVLELITP----------RNINEVVLMLKKE 359 (867)
Q Consensus 299 vL~~L~~L~~~~p~~------l--~~~~~~il~~L~d~d-~~IR~kaLelL~~Lv~~----------~Nv~~IV~~L~ke 359 (867)
++..|..|...+++. + ...+..++++|.+++ ..||+.+..+|.+++.. .=+..++..|...
T Consensus 463 Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~ 542 (780)
T 2z6g_A 463 AICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 542 (780)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhc
Confidence 999999997655431 1 123445667777766 49999999999998742 1123333333221
Q ss_pred ---HHH----------hhcCCccCCHHHHHHHHHHHHHhHccCCccH-----HHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 002905 360 ---VVK----------TQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVRE 421 (867)
Q Consensus 360 ---l~~----------~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a-----~~~v~~Ll~lL~~~~~~v~~evi~~l~~ 421 (867)
.++ ..+ .....+++..++.+|+.++. .+... ..+++.|+++|.+..+.+...+...+.+
T Consensus 543 ~~~~~~~aa~al~nq~~~~--~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 619 (780)
T 2z6g_A 543 HQDTQRRTSMGGTQQQFVE--GVRMEEIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 619 (780)
T ss_dssp HHHHHHTTC------CCST--TCCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred chhHHHHHhhccccchhhc--ccChHHHHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 000 000 01235678888999998873 22211 2357889999999888888888888888
Q ss_pred HHHhCcccHHH-----HHHHHHHHhcccchHhHHHHHhhHhhccCCCCCc-HHH--HHHHHHHhhC
Q 002905 422 IIEMNPKLRVS-----IITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE-VEN--GIATIKQCLG 479 (867)
Q Consensus 422 ii~~~p~lr~~-----il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~-i~~--~~~~i~~~l~ 479 (867)
+. .+++.+.. ++..|.+.+.+ .++.++..++|.++..+...+. ... ..+.+...+.
T Consensus 620 L~-~~~~~~~~i~~~g~i~~L~~Ll~~-~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~ 683 (780)
T 2z6g_A 620 LA-QDKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683 (780)
T ss_dssp HH-TSHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC--
T ss_pred Hh-cCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHh
Confidence 86 34554443 35567766655 5688999999999998776652 222 4455555554
No 30
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.24 E-value=4.4e-10 Score=114.42 Aligned_cols=185 Identities=17% Similarity=0.226 Sum_probs=132.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
.+..|.+.|+|+|+.+|..|++.|+.++.++.+ +.+.+.|.|+++.||..|+.++.++.. + +..+.+.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~~~~L~ 87 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALGQIGD----E----RAVEPLI 87 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSCHHHHHHHHHHHHHHCC----G----GGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHH----HHHHHHHcCCCHHHHHHHHHHHHhhCC----H----HHHHHHH
Confidence 357788889999999999999999999987654 556678899999999999999998754 2 3334555
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCCh
Q 002905 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (867)
.+| .|.|+.|+..|+.+|..+....+++.|...++ +.++..+..+++.|+++.. + ..++.|..++++.++
T Consensus 88 ~~l-~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~ 157 (211)
T 3ltm_A 88 KAL-KDEDGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGD--E----RAVEPLIKALKDEDG 157 (211)
T ss_dssp HHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSSH
T ss_pred HHH-cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCC--H----HHHHHHHHHHcCCCH
Confidence 655 89999999999999998887767777766653 4667777777777777642 2 245566667777777
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh
Q 002905 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~ 309 (867)
.|+..|+.+|..+.. +. +...+..++ +++++.||..+...|..+...
T Consensus 158 ~vr~~a~~aL~~~~~-~~----~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 158 WVRQSAADALGEIGG-ER----VRAAMEKLA-ETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHHHHHHHHCS-HH----HHHHHHHHH-HHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCc-hh----HHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC
Confidence 777777777777754 22 223333333 456677777777777666543
No 31
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.23 E-value=1.6e-08 Score=123.73 Aligned_cols=433 Identities=12% Similarity=0.067 Sum_probs=269.5
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC-CCcchHHHHHHHHHHHhhcCCC---------
Q 002905 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS-EDHTIQKLLLLYLEIIDKTDAK--------- 87 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S-~d~~lKkL~Ylyl~~~~~~d~d--------- 87 (867)
.+.++-+.+.+++...|..|...+--+.. .+.+.+...++..+... .+..+|.++-+++..+-..+.+
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~--~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAV--ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHh--cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34556666778888877777665533221 11233444444433222 4577888887777664211100
Q ss_pred -CCCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCch----hhHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhh
Q 002905 88 -GRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNET----EIIEPLIPSVLQNLQHR--HPYIRRNAILAVMAIY 159 (867)
Q Consensus 88 -g~l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~----el~e~L~~~V~~~L~d~--~pyVRK~A~lal~kI~ 159 (867)
.++-++. -.+-+.+.+-|.++++.+ ..+...++.|... +-.+.++|.+.+++.++ ++.+|+.|+.++..+.
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 1122332 334566677788888777 6666666665432 33467889999999998 9999999999999998
Q ss_pred ccCCC-cccc----cchHHHHHHHHccCC--ChhHHHHHHHHHHhcchh---h-----HHHHHHHHhhh-cCccchHHHH
Q 002905 160 KLPQG-EQLL----VDAPEMIEKVLSTEQ--DPSAKRNAFLMLFTCDQD---R-----AINYLLTHVDR-VSEWGELLQM 223 (867)
Q Consensus 160 ~l~~~-p~li----~d~~~ll~~lL~~D~--D~~v~~~A~~~L~ei~~~---~-----al~~L~~~l~~-i~~~~p~lQ~ 223 (867)
. .. ++.+ +.+.+.+.+.| .+. ++.++..|+.+|..+... . ...++...+.+ +...++-.+.
T Consensus 159 ~--~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~ 235 (876)
T 1qgr_A 159 Q--DIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV 235 (876)
T ss_dssp H--HSCHHHHGGGHHHHHHHHHHHH-STTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred H--hcCHhhHHhHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 7 32 3222 22334444555 444 688999999998875421 0 01233333322 3344555677
Q ss_pred HHHHHHHHhhhcCchhH----H-HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCh----------------------H--
Q 002905 224 VVLELIRKVCRTNKGEK----G-KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP----------------------T-- 274 (867)
Q Consensus 224 ~iL~ll~~~~~~~p~~~----~-~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p----------------------~-- 274 (867)
.+++.+..++...|... . .+++.+...+.+.++.|+.+|...+..+.... .
T Consensus 236 ~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (876)
T 1qgr_A 236 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (876)
T ss_dssp HHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHH
Confidence 78888888776555432 2 56677777777888889988887766553210 1
Q ss_pred --HHHHHHHHHHHHHcc------CCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002905 275 --AIRAAANTYSQLLLS------QSDNNVKLIVLDRLNELRSSHR-DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 275 --~lk~aa~~li~ll~~------~sD~Nvk~ivL~~L~~L~~~~p-~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
.++.+...++..+.. +.++++|..+...|..+....+ .++......+...+.++++.+|..++..+..++.
T Consensus 316 ~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 123344455555532 3457899999999988876544 3444444445566789999999999999999886
Q ss_pred CCc---HHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC------ccHHHHHHHHHHHHcCCCcccHHHHH
Q 002905 346 PRN---INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP------EVASTVVHLLMDFLGDSNVASAIDVI 416 (867)
Q Consensus 346 ~~N---v~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~------~~a~~~v~~Ll~lL~~~~~~v~~evi 416 (867)
.-. +...+..+...+....+ |.+..+|..+..+++.++..++ +....+++.++..+.+. ..+...+.
T Consensus 396 ~~~~~~~~~~~~~~l~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~ 471 (876)
T 1qgr_A 396 GPEPSQLKPLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVC 471 (876)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 532 33333334434433333 4678999999999999997654 45678889999988875 66677777
Q ss_pred HHHHHHHHhCc------------------ccHHHHHHHHHHHhcccc--hHhHHHHHhhHhhcc
Q 002905 417 IFVREIIEMNP------------------KLRVSIITRLLDNFYQIR--AARVCTCALWIIGEY 460 (867)
Q Consensus 417 ~~l~~ii~~~p------------------~lr~~il~~L~~~L~~i~--~~~v~~~alWiLGEY 460 (867)
..+..++...+ .....++..|+..+.+.. ...++..++-.+|..
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l 535 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI 535 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHH
Confidence 77777765421 123568888888876542 234444455444443
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.22 E-value=1e-08 Score=119.25 Aligned_cols=353 Identities=14% Similarity=0.164 Sum_probs=230.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcC----Cch---hhHHH-HHHHHHHhcCC-CChHHHHHHHHHHHHhhccCCCcccc
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRL----NET---EIIEP-LIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I----~~~---el~e~-L~~~V~~~L~d-~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
+.-+.+.++|.|+-.+-.|.+.+-++ ++| ++++. ++|.++++|.+ .+|.|+..|+.|+.+|.. ..++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQT 136 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHHHH
Confidence 34455566666666655554433332 333 23333 68899999975 579999999999999977 455332
Q ss_pred c-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhc--CccchHHHHHHHHHHH
Q 002905 169 V-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRV--SEWGELLQMVVLELIR 230 (867)
Q Consensus 169 ~-----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i--~~~~p~lQ~~iL~ll~ 230 (867)
. .+.+.+-.+| .++|+.++..|+.+|..+..+. +++.|..++..- ......++..+...+.
T Consensus 137 ~~vv~~GaIp~Lv~lL-~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 1 1334454655 7899999999999999986432 244555555421 1222334555666777
Q ss_pred HhhhcC-ch----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH-HHH-----HHHHHHHHHccCCCHHHHHHH
Q 002905 231 KVCRTN-KG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-IRA-----AANTYSQLLLSQSDNNVKLIV 299 (867)
Q Consensus 231 ~~~~~~-p~----~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~-lk~-----aa~~li~ll~~~sD~Nvk~iv 299 (867)
.+++.. +. ....+++.|..+|.+.++.|+..|+.+|..+...+.. .+. +...++.++ .+++..++.-+
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a 294 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA 294 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHH
Confidence 777643 21 2356888999999999999999999999999865432 222 345677766 67889999999
Q ss_pred HHHHHHHHhhChhhH----H-HHHHhheecccCCCHHHHHHHHHHHhccCCC--CcHHH-----HHHHHHHHHHHhhcCC
Q 002905 300 LDRLNELRSSHRDIM----V-DLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNINE-----VVLMLKKEVVKTQSGE 367 (867)
Q Consensus 300 L~~L~~L~~~~p~~l----~-~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~--~Nv~~-----IV~~L~kel~~~~~~~ 367 (867)
+..|..|....+..- . .-+..+..+|.+++..||+.+.-.+..++.. .+... ++..|..-+.
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~------ 368 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS------ 368 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH------
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc------
Confidence 999999876544321 1 2344567788999999999999999998753 23332 3334443222
Q ss_pred ccCCHHHHHHHHHHHHHhHccCCcc------HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc---H--HHHHHH
Q 002905 368 LEKNGEYRQMLIQAIHSCAIKFPEV------ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL---R--VSIITR 436 (867)
Q Consensus 368 ~d~d~e~r~~lI~aI~~la~kf~~~------a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l---r--~~il~~ 436 (867)
..+.++|+.++.+|+.++..-... ..-+++.|+++|......+...++..+..+++..++. . ...++.
T Consensus 369 -~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee 447 (510)
T 3ul1_B 369 -KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447 (510)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH
Confidence 246899999999999988643221 1245788999999888888888888888887633221 1 111111
Q ss_pred -----HHHHhcccchHhHHHHHhhHhhccC
Q 002905 437 -----LLDNFYQIRAARVCTCALWIIGEYC 461 (867)
Q Consensus 437 -----L~~~L~~i~~~~v~~~alWiLGEY~ 461 (867)
.++.|..-...+++..+..||-.|-
T Consensus 448 ~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 448 CGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 1223333355678888888887763
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.20 E-value=2.4e-09 Score=123.45 Aligned_cols=330 Identities=10% Similarity=0.074 Sum_probs=229.8
Q ss_pred CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc---c--cchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002905 124 NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL---L--VDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 124 ~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l---i--~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
..+++....+|.+.+.|.+.++.||.+|+.++.++.. ..+.. + +...+.+-++|..+.|+.++..|..+|..+
T Consensus 10 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~--~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK--KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp -------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT--SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred chhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3455566678899999999999999999999999987 43321 1 123333434554566899999999999987
Q ss_pred chhh----------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHHHcCCChHHHHHHH
Q 002905 199 DQDR----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISLLNAPSTAVIYECA 263 (867)
Q Consensus 199 ~~~~----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~-----~~li~~L~~lL~s~s~aV~~eaa 263 (867)
..+. +++.|..++ ...++-.|...+..|..++..++..+ ...++.+..+|.+.+..+...++
T Consensus 88 s~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 164 (529)
T 1jdh_A 88 SHHREGLLAIFKSGGIPALVKML---GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164 (529)
T ss_dssp TTSHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHH
T ss_pred HcCchhHHHHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 6432 244455544 45678889999999999987655433 34678899999999888998888
Q ss_pred HHHHhcCCC-hHHHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhh----HH-HHHHhheecccCCCHHH
Q 002905 264 GTLVSLSSA-PTAIR-----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI----MV-DLIMDVLRALNSPNLDI 332 (867)
Q Consensus 264 ~tL~~Ls~~-p~~lk-----~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~----l~-~~~~~il~~L~d~d~~I 332 (867)
.+|..+... ++..+ .+...+++++....+...++.+...|..+.. +|.. ++ ..+..++.++.+++..+
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 888877543 32211 2456778877666666777777777777764 3321 11 23455677888999999
Q ss_pred HHHHHHHHhccCCC----CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH-----HHHHHHHHHH
Q 002905 333 RRKTLDIVLELITP----RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDF 403 (867)
Q Consensus 333 R~kaLelL~~Lv~~----~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a-----~~~v~~Ll~l 403 (867)
++.++..+..++.. ..+..+++.|.+-+. +.+++++..+..+++.++...+... ...++.|+++
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~-------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~l 316 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG-------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT-------CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Confidence 99999999988753 234566776664331 3578999999999999986543222 1357888888
Q ss_pred HcCCC--cccHHHHHHHHHHHHHhCccc---HH-----HHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCc
Q 002905 404 LGDSN--VASAIDVIIFVREIIEMNPKL---RV-----SIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE 466 (867)
Q Consensus 404 L~~~~--~~v~~evi~~l~~ii~~~p~l---r~-----~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~ 466 (867)
|.+.+ +.+...++..++.+....|+. +. ..+..|++.+.+-..+.++..++|++|..+...+.
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh
Confidence 87633 567788889999997766552 22 34677888887655568999999999999876544
No 34
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=1.1e-09 Score=110.65 Aligned_cols=182 Identities=16% Similarity=0.226 Sum_probs=136.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
....+.+.|.|+|+.+|..|++.|+.+..++. ++.+.+.|.|+++.||+.|+.++.++.. + +..+.+.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~----~~~~~L~ 82 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERA----VEPLIKALKDEDAWVRRAAADALGQIGD----E----RAVEPLI 82 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHcCCCHHHHHHHHHHHHhhCC----H----HHHHHHH
Confidence 45788899999999999999999999998665 4556678899999999999999998754 2 3344555
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCCh
Q 002905 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (867)
.+| .|.|+.|+..|+.+|..+....+++.|...++ +.++..+..+++.+.++.. + ..++.|..++.+.++
T Consensus 83 ~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~ 152 (201)
T 3ltj_A 83 KAL-KDEDGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGD--E----RAVEPLIKALKDEDG 152 (201)
T ss_dssp HHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHTC--G----GGHHHHHHHTTCSSH
T ss_pred HHH-cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC--H----HHHHHHHHHHcCCCH
Confidence 655 78999999999999999887777777776653 4677778888888877743 2 345667777777788
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002905 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L 306 (867)
.|+.+|+.+|..+.. +. +...+..++ +++++.||..+...|.++
T Consensus 153 ~vr~~A~~aL~~~~~-~~----~~~~L~~~l-~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 153 WVRQSAADALGEIGG-ER----VRAAMEKLA-ETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHHCS-HH----HHHHHHHHH-HHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCc-hh----HHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 888888888888753 22 233333433 556777777777777665
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.17 E-value=4.5e-09 Score=125.62 Aligned_cols=328 Identities=10% Similarity=0.075 Sum_probs=208.4
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc---c--cchHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002905 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL---L--VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 126 ~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l---i--~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
+++..-.+|.+.+.|.+.++.||.+|+.++.++.. ..+.. + +...+.+-++|..+.|+.++.+|+.+|..+..
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~--~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK--KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHT--STTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHC--CChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 33444456667777777777888888877777776 33321 1 12222333344344577777777777776543
Q ss_pred hh----------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHHHcCCChHHHHHHHHH
Q 002905 201 DR----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISLLNAPSTAVIYECAGT 265 (867)
Q Consensus 201 ~~----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~-----~~li~~L~~lL~s~s~aV~~eaa~t 265 (867)
+. +++.|..++ ...++-.|...+..|..++..++..+ ...++.|..+|.+.++.+...++.+
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKML---GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHT---TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHH---hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 21 233344443 34567777888888887776543322 3356778888888777777777777
Q ss_pred HHhcCC-ChHHHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh----hHH-HHHHhheecccCCCHHHHH
Q 002905 266 LVSLSS-APTAIR-----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD----IMV-DLIMDVLRALNSPNLDIRR 334 (867)
Q Consensus 266 L~~Ls~-~p~~lk-----~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~----~l~-~~~~~il~~L~d~d~~IR~ 334 (867)
|..++. +++... .++..+++++.+.++..++..++..|..+.. ++. +++ .-+..++.++.+++..+++
T Consensus 164 L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~ 242 (644)
T 2z6h_A 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHH
T ss_pred HHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 777753 332211 2346677777655556677777777777653 222 111 1244466677888889999
Q ss_pred HHHHHHhccCCC----CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH-----HHHHHHHHHHc
Q 002905 335 KTLDIVLELITP----RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS-----TVVHLLMDFLG 405 (867)
Q Consensus 335 kaLelL~~Lv~~----~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~-----~~v~~Ll~lL~ 405 (867)
.++.++..|+.. ..+..++..|.+-+. +.+.++|..+..+++.++..-+.... -.++.|+++|.
T Consensus 243 ~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~-------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 243 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLG-------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp HHHHHHHHHGGGCTTCCSCHHHHHHHHHHTT-------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhhhhhHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH
Confidence 999988888752 234556666653322 24678999999999998865432221 36788888888
Q ss_pred CCC--cccHHHHHHHHHHHHHhCcc---cHH-----HHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCc
Q 002905 406 DSN--VASAIDVIIFVREIIEMNPK---LRV-----SIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE 466 (867)
Q Consensus 406 ~~~--~~v~~evi~~l~~ii~~~p~---lr~-----~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~ 466 (867)
+.+ +.+...++..++.+....|+ .+. ..+..|++.|.+-+.+.++..++|++|..+...++
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 643 57778888899998765553 222 46788888887655578999999999998775544
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.15 E-value=1.3e-08 Score=118.79 Aligned_cols=352 Identities=14% Similarity=0.157 Sum_probs=230.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcC----Cch---hhHH-HHHHHHHHhcC-CCChHHHHHHHHHHHHhhccCCCcccc
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRL----NET---EIIE-PLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I----~~~---el~e-~L~~~V~~~L~-d~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
+..+.+.++++|+-.+-.|++.+-++ ..| ++++ -++|.++++|. +.+|.++..|+.|+..|.. ..++..
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~--~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQT 155 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CCHHHH
Confidence 45667778888888777777666543 222 2222 26888999995 5679999999999999987 554322
Q ss_pred c-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhc--CccchHHHHHHHHHHH
Q 002905 169 V-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRV--SEWGELLQMVVLELIR 230 (867)
Q Consensus 169 ~-----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i--~~~~p~lQ~~iL~ll~ 230 (867)
. .+.+.+-.+| .++++.++..|+.+|..+..+. +++.|..++..- ......++..+...+.
T Consensus 156 ~~vv~~Gaip~Lv~LL-~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 1 1334444555 8899999999999999986432 234555555321 1222334556667777
Q ss_pred HhhhcC-c----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHH-HH-----HHHHHHHHHccCCCHHHHHHH
Q 002905 231 KVCRTN-K----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAI-RA-----AANTYSQLLLSQSDNNVKLIV 299 (867)
Q Consensus 231 ~~~~~~-p----~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~l-k~-----aa~~li~ll~~~sD~Nvk~iv 299 (867)
.+++.. | ......++.|..+|++.++.|+..|+.+|..+...+... +. +...++.++ .+++..++.-+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a 313 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA 313 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHH
Confidence 777643 2 123567899999999999999999999999987654322 22 345677766 67889999999
Q ss_pred HHHHHHHHhhChhhHH-----HHHHhheecccCCCHHHHHHHHHHHhccCCC--CcHHH-----HHHHHHHHHHHhhcCC
Q 002905 300 LDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNINE-----VVLMLKKEVVKTQSGE 367 (867)
Q Consensus 300 L~~L~~L~~~~p~~l~-----~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~--~Nv~~-----IV~~L~kel~~~~~~~ 367 (867)
+..|..|....+..-. ..+..++.+|.+++..||+.+.-.|..++.. ..... ++..|...+.
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~------ 387 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS------ 387 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH------
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc------
Confidence 9999999765443211 1234456678899999999999999998742 22332 3333433222
Q ss_pred ccCCHHHHHHHHHHHHHhHccCCcc------HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccH-HHHHHHHH--
Q 002905 368 LEKNGEYRQMLIQAIHSCAIKFPEV------ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR-VSIITRLL-- 438 (867)
Q Consensus 368 ~d~d~e~r~~lI~aI~~la~kf~~~------a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr-~~il~~L~-- 438 (867)
..+.++|..++.+|+.++..-.+. ..-+++.|+++|...++.+..-++..|..+++..+... ..-+..++
T Consensus 388 -~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee 466 (529)
T 3tpo_A 388 -KADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 466 (529)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHH
Confidence 246789999999999987542221 12357889999998888777777788887775322211 11111121
Q ss_pred ----HH---hcccchHhHHHHHhhHhhcc
Q 002905 439 ----DN---FYQIRAARVCTCALWIIGEY 460 (867)
Q Consensus 439 ----~~---L~~i~~~~v~~~alWiLGEY 460 (867)
+. |.+-...+++..+.-||-.|
T Consensus 467 ~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 467 CGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12 22234456777777777665
No 37
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.14 E-value=3.4e-09 Score=135.58 Aligned_cols=377 Identities=10% Similarity=0.118 Sum_probs=238.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc-cccc
Q 002905 99 QNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ-LLVD 170 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~-------~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~-li~d 170 (867)
+.+...++||++-+|-.|+..|.+.- .+...+.+++.+.+.|.|+++.||+.|+.|+..+.. ..+. .++.
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~~~~~~~~~ 86 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--KVKEYQVET 86 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--TSCHHHHHH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hCCHHHHHH
Confidence 55666699999999999988886543 224456788899999999999999999999999987 4443 2233
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhh------------HHHHHH-HHhhhcC-ccchHHHHHHHHHHHHhhhcC
Q 002905 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR------------AINYLL-THVDRVS-EWGELLQMVVLELIRKVCRTN 236 (867)
Q Consensus 171 ~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~------------al~~L~-~~l~~i~-~~~p~lQ~~iL~ll~~~~~~~ 236 (867)
+.+.+-..| .|.++.++..|..+|..+.... .++.+. .++..+. ..++-.+...++.+...+...
T Consensus 87 i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 333333333 6778888888888887764221 122222 2223333 345667888899998887432
Q ss_pred c----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC
Q 002905 237 K----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH 310 (867)
Q Consensus 237 p----~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~ 310 (867)
+ .....+++.+.+.|.+.++.|+..|+.++..+... +..+......++..+....++.+|-.+++.+..+....
T Consensus 166 ~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 166 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 2 14577888889999999999999999999887542 11223345556666655545567777888888888766
Q ss_pred hhhHHHH----HHhheecccCCCHHHHHHHHHHHhccCC--CC----cHHHHHHHHHHHHHHhh----------------
Q 002905 311 RDIMVDL----IMDVLRALNSPNLDIRRKTLDIVLELIT--PR----NINEVVLMLKKEVVKTQ---------------- 364 (867)
Q Consensus 311 p~~l~~~----~~~il~~L~d~d~~IR~kaLelL~~Lv~--~~----Nv~~IV~~L~kel~~~~---------------- 364 (867)
|..+.+| +..++..+.+++..+|..++..+..++. .. .+..++..+.+.+....
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~ 325 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence 6555443 4445566778889999988887765543 22 23344444332211000
Q ss_pred --cC-C-----------ccCCHHHHHHHHHHHHHhHccCCccHH----HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhC
Q 002905 365 --SG-E-----------LEKNGEYRQMLIQAIHSCAIKFPEVAS----TVVHLLMDFLGDSNVASAIDVIIFVREIIEMN 426 (867)
Q Consensus 365 --~~-~-----------~d~d~e~r~~lI~aI~~la~kf~~~a~----~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~ 426 (867)
.. + .+...++|+.+..+++.++..+++... .+++.+++.+.+..+.++..++..+..++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 405 (1230)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 00 0 011235799999999999987775433 33455555566777888888888887777642
Q ss_pred cc-------------------cHH----HHHHHHHHHhcccchHhHHHHHhhHhhccCCCCC-----cHHHHHHHHHHhh
Q 002905 427 PK-------------------LRV----SIITRLLDNFYQIRAARVCTCALWIIGEYCQSLS-----EVENGIATIKQCL 478 (867)
Q Consensus 427 p~-------------------lr~----~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~-----~i~~~~~~i~~~l 478 (867)
.. .-. .++..+...+.+ ..+.++.++++.+|+.....+ ....++..+...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 406 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp CCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred ccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 21 112 233333444554 346778888888887755332 2345566666665
Q ss_pred C
Q 002905 479 G 479 (867)
Q Consensus 479 ~ 479 (867)
.
T Consensus 485 ~ 485 (1230)
T 1u6g_C 485 N 485 (1230)
T ss_dssp T
T ss_pred c
Confidence 4
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.14 E-value=2.5e-08 Score=121.23 Aligned_cols=354 Identities=13% Similarity=0.074 Sum_probs=248.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchh-----hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCC-Ccc--cc
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETE-----IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ-GEQ--LL 168 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~e-----l~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~-~p~--li 168 (867)
++..|.+=++|+++.++-.|+..++.+.... +++.-+|.+...+.+.++.+|..|+.++.|+-.-.. ++. .+
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence 4567777888999999999999998876532 333345888999999999999999999999964100 121 11
Q ss_pred -----cchHHHHHHHHccC-CChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhcCccchHHHHHHHHHHHH
Q 002905 169 -----VDAPEMIEKVLSTE-QDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRK 231 (867)
Q Consensus 169 -----~d~~~ll~~lL~~D-~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~ 231 (867)
+...+.+.++|.++ .|+.++.+|+.+|.++..+. +++.|..+++ ..++-+|-.++..|..
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~---s~d~~i~~~al~~L~N 447 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR---GGNQSCLYGVVTTFVN 447 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH---TTCGGGHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC---CCChHHHHHHHHHHHH
Confidence 12234455666444 28999999999999886432 3445555554 3566779999999999
Q ss_pred hhhcCc-h----------------------------hH--------HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChH
Q 002905 232 VCRTNK-G----------------------------EK--------GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPT 274 (867)
Q Consensus 232 ~~~~~p-~----------------------------~~--------~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~ 274 (867)
++...+ . .+ .-.++.|..+|.+.++.|+-+|+++|.+++.+++
T Consensus 448 Lt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~ 527 (810)
T 3now_A 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE 527 (810)
T ss_dssp HTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH
T ss_pred HcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 887431 0 01 1246889999999999999999999999987654
Q ss_pred HHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhh-ChhhH------HHHHHhheecccCC-CHHHHHHHHHHHh
Q 002905 275 AIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSS-HRDIM------VDLIMDVLRALNSP-NLDIRRKTLDIVL 341 (867)
Q Consensus 275 ~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~-~p~~l------~~~~~~il~~L~d~-d~~IR~kaLelL~ 341 (867)
.... +..+++.+| .++++..|..+...|..|... +|... .+-+..++.+|.++ +...+..|+..|.
T Consensus 528 ~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~ 606 (810)
T 3now_A 528 LRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606 (810)
T ss_dssp HHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 3222 457788887 566788999999999988753 45431 22344556667654 4455668999999
Q ss_pred ccCCC--CcHHHHHH-----HHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH------HHHHHHHHHHHcCCC
Q 002905 342 ELITP--RNINEVVL-----MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA------STVVHLLMDFLGDSN 408 (867)
Q Consensus 342 ~Lv~~--~Nv~~IV~-----~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a------~~~v~~Ll~lL~~~~ 408 (867)
+|+.. ++...|+. .|. ++.. +.+..+++.+..+|+.++.. ++.. ...++.|+.++....
T Consensus 607 NLa~~~d~~~~~Ii~aG~l~~Lv-~LL~------s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d 678 (810)
T 3now_A 607 NLASMNESVRQRIIKEQGVSKIE-YYLM------EDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDED 678 (810)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHH-HHHH------SCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSS
T ss_pred HHhcCCHHHHHHHHHcCCHHHHH-HHHc------CCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCC
Confidence 99875 34444443 233 2222 23568999999999998742 1111 236788999999888
Q ss_pred cccHHHHHHHHHHHHHhCcccHHH------HHHHHHHHhcccchHhHHHHHhhHhhccCCC
Q 002905 409 VASAIDVIIFVREIIEMNPKLRVS------IITRLLDNFYQIRAARVCTCALWIIGEYCQS 463 (867)
Q Consensus 409 ~~v~~evi~~l~~ii~~~p~lr~~------il~~L~~~L~~i~~~~v~~~alWiLGEY~~~ 463 (867)
..+..++...|..+...+|..... .++.|++.+.+ .+.+++..++|+++.....
T Consensus 679 ~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 679 EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHhC
Confidence 888888999999998766654443 45577877765 6789999999999987653
No 39
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.11 E-value=1.2e-08 Score=114.90 Aligned_cols=361 Identities=12% Similarity=0.056 Sum_probs=232.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC-CCcchHHHHHHHHHHHhhcCC----------
Q 002905 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS-EDHTIQKLLLLYLEIIDKTDA---------- 86 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S-~d~~lKkL~Ylyl~~~~~~d~---------- 86 (867)
.+.++-..+.+++...|..|-+.+-.+... +.+.+.......+..+ .+...|.++-+++..+-+...
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVE--NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 355666777788888888887776553321 1233333344322222 367899999888887632210
Q ss_pred CCCCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc---hh-hHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhh
Q 002905 87 KGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNE---TE-IIEPLIPSVLQNLQHR--HPYIRRNAILAVMAIY 159 (867)
Q Consensus 87 dg~l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~---~e-l~e~L~~~V~~~L~d~--~pyVRK~A~lal~kI~ 159 (867)
-..+-++. --+-+.+..-|.++++.+ ..+-.+++.|.. |+ -.+.++|.+.+++.+. ++.+|..|+.++..+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 01122232 334566777788888877 666666666653 32 4567899999999998 9999999999999998
Q ss_pred ccCCC-cccc----cchHHHHHHHHccCC--ChhHHHHHHHHHHhcch---hh-----HHHHHHHHhhh-cCccchHHHH
Q 002905 160 KLPQG-EQLL----VDAPEMIEKVLSTEQ--DPSAKRNAFLMLFTCDQ---DR-----AINYLLTHVDR-VSEWGELLQM 223 (867)
Q Consensus 160 ~l~~~-p~li----~d~~~ll~~lL~~D~--D~~v~~~A~~~L~ei~~---~~-----al~~L~~~l~~-i~~~~p~lQ~ 223 (867)
+ .. ++.. +.+.+.+..+| .+. ++.|+..|+.++..+.+ +. ...++...+.+ ....++-.+.
T Consensus 159 ~--~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~ 235 (462)
T 1ibr_B 159 Q--DIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV 235 (462)
T ss_dssp H--HSCGGGTGGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred H--hCCchhhHhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 7 33 3322 22334455555 555 78999999999886421 11 12444444332 3445666677
Q ss_pred HHHHHHHHhhhcCchh----HH-HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCh----------------------H--
Q 002905 224 VVLELIRKVCRTNKGE----KG-KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP----------------------T-- 274 (867)
Q Consensus 224 ~iL~ll~~~~~~~p~~----~~-~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p----------------------~-- 274 (867)
.+++.|..++...|.. .. .+++.+...+...++.|+..|...+..+.... .
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (462)
T 1ibr_B 236 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (462)
T ss_dssp HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHH
Confidence 8888888887654432 23 67777778888888999999888776653211 1
Q ss_pred --HHHHHHHHHHHHHcc------CCCHHHHHHHHHHHHHHHhhChh-hHHHHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002905 275 --AIRAAANTYSQLLLS------QSDNNVKLIVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 275 --~lk~aa~~li~ll~~------~sD~Nvk~ivL~~L~~L~~~~p~-~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
.+..+...+++.+.. +.++++|..+.+.|..+....++ ++......+...+.++++.+|..++..+..++.
T Consensus 316 ~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 123344455555532 23468999999999999876554 333334445567889999999999999999885
Q ss_pred CC-------cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc
Q 002905 346 PR-------NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE 391 (867)
Q Consensus 346 ~~-------Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~ 391 (867)
.- .+..+++.|.+.+ . |.++.+|..+..+++.++..+++
T Consensus 396 ~~~~~~~~~~l~~~~~~l~~~l----~---d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 396 GPEPSQLKPLVIQAMPTLIELM----K---DPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SSCTTTTCTTTTTHHHHHHHGG----G---CSCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCcHHHHHHHHHHHHHHHHHHh----c---CCCHHHHHHHHHHHHHHHHhccc
Confidence 32 2344555554332 2 45688999999999998876544
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.08 E-value=1e-08 Score=104.27 Aligned_cols=187 Identities=15% Similarity=0.193 Sum_probs=137.5
Q ss_pred CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHH
Q 002905 52 PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEP 131 (867)
Q Consensus 52 s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~ 131 (867)
+..+..+++ .+.+++..+|+.+-..+..+ -++ + ++..|.+-|.|+++.+|..|++.|+.+..++.+
T Consensus 18 ~~~~~~L~~-~L~~~~~~vR~~A~~~L~~~--~~~------~---~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~-- 83 (211)
T 3ltm_A 18 PEKVEMYIK-NLQDDSYYVRRAAAYALGKI--GDE------R---AVEPLIKALKDEDAWVRRAAADALGQIGDERAV-- 83 (211)
T ss_dssp GGGHHHHHH-HTTCSSHHHHHHHHHHHHHH--CCG------G---GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH--
T ss_pred HhHHHHHHH-HHcCCCHHHHHHHHHHHHHh--CCc------c---HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH--
Confidence 556666676 45677777777776666555 111 1 346667777889999999999999999887664
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHh
Q 002905 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHV 211 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l 211 (867)
+.+.+.|.|+++.||..|+.++.++.. + +..+.+..+| .|.|+.|+..|+.+|..+....+++.|...+
T Consensus 84 --~~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 152 (211)
T 3ltm_A 84 --EPLIKALKDEDGWVRQSAAVALGQIGD----E----RAVEPLIKAL-KDEDWFVRIAAAFALGEIGDERAVEPLIKAL 152 (211)
T ss_dssp --HHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred --HHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455667889999999999999988754 2 2334555555 7889999999999999888777788877776
Q ss_pred hhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 002905 212 DRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA 272 (867)
Q Consensus 212 ~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~ 272 (867)
+ +.+++.+..+++.|.++.. ...++.|..++++.++.|+..|+.+|..+...
T Consensus 153 ~---d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 153 K---DEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred c---CCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4 5678888888888888743 35667788888888888999999999888654
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.04 E-value=1.2e-08 Score=102.83 Aligned_cols=184 Identities=14% Similarity=0.185 Sum_probs=119.1
Q ss_pred chhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHH
Q 002905 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPL 132 (867)
Q Consensus 53 ~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L 132 (867)
.....+|+ .+.+++..+|+.+...+..+. ++ + ++..+.+-|.|+|+.+|..|++.|+.+..++.+
T Consensus 14 ~~~~~~i~-~L~~~~~~vr~~A~~~L~~~~--~~------~---~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~--- 78 (201)
T 3ltj_A 14 EKVEMYIK-NLQDDSYYVRRAAAYALGKIG--DE------R---AVEPLIKALKDEDAWVRRAAADALGQIGDERAV--- 78 (201)
T ss_dssp HHHHHHHH-HTTCSCHHHHHHHHHHHHHHC--CG------G---GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH---
T ss_pred cchHHHHH-HhcCCCHHHHHHHHHHHHhcC--Ch------h---HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH---
Confidence 34555666 346677777666655555441 11 1 235555666777777887888888777776554
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhh
Q 002905 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVD 212 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~ 212 (867)
+.+.+.|.|+++.||..|+.++.++.. + +..+.+..+| .|.|+.|+..|+.+|..+....+++.|...++
T Consensus 79 -~~L~~~l~d~~~~vr~~a~~aL~~~~~----~----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 148 (201)
T 3ltj_A 79 -EPLIKALKDEDGWVRQSAAVALGQIGD----E----RAVEPLIKAL-KDEDWFVRIAAAFALGEIGDERAVEPLIKALK 148 (201)
T ss_dssp -HHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT
T ss_pred -HHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 444557777777788877777777644 2 2334444544 67777777777777777776666776666654
Q ss_pred hcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 002905 213 RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS 270 (867)
Q Consensus 213 ~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls 270 (867)
+.++..+..+++.|.++.. ...++.|..++++.++.|+..|+.+|..+.
T Consensus 149 ---d~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 149 ---DEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---CSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---CCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3566777777777777632 245566666777777777777777777664
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.03 E-value=4.6e-07 Score=105.31 Aligned_cols=318 Identities=14% Similarity=0.153 Sum_probs=220.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCC
Q 002905 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGR 89 (867)
Q Consensus 17 ~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~-------s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~ 89 (867)
.++++|-+.+.|+|.+.+.+|.+++=.+.....+- ..+.+..|+++-.+++..++.-+--++..++.-+++.
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~- 135 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ- 135 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH-
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH-
Confidence 46899999999999999999988776555554432 2356778885534555677776655555554333211
Q ss_pred CCchHHH---HHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHHH-----HHHHHHHhcCCCC-----hHHHHHHHHH
Q 002905 90 VLPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEP-----LIPSVLQNLQHRH-----PYIRRNAILA 154 (867)
Q Consensus 90 l~~EmiL---v~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e~-----L~~~V~~~L~d~~-----pyVRK~A~la 154 (867)
+ ..+. ++..|.+-|+++++.+|-.|+.+|++|. .++.-.. .++.+...|.+.+ ..+.++|+.+
T Consensus 136 -~-~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 136 -T-KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp -H-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred -H-HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 0 1122 5678889999999999999999999995 3443322 3677888886543 4678899999
Q ss_pred HHHhhccCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhcCccc
Q 002905 155 VMAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWG 218 (867)
Q Consensus 155 l~kI~~l~~~p~li-----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i~~~~ 218 (867)
+..+.. ...... ..+.+.+.++| .+.|+.++..|+.+|..+.... .++.|..++ ...+
T Consensus 214 L~nl~~--~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~ 287 (510)
T 3ul1_B 214 LSNLCR--NKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL---GATE 287 (510)
T ss_dssp HHHHHC--CCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH---TCSC
T ss_pred HHHHhh--cccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh---cCCC
Confidence 999887 332111 12334555655 7899999999999999876321 134455544 3566
Q ss_pred hHHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHHcCCChHHHHHHHHHHHhcCCCh-HHHHH-----HHHHHHHHH
Q 002905 219 ELLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLLNAPSTAVIYECAGTLVSLSSAP-TAIRA-----AANTYSQLL 287 (867)
Q Consensus 219 p~lQ~~iL~ll~~~~~~~p~~~~~l-----i~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p-~~lk~-----aa~~li~ll 287 (867)
+-.|...++.++.++..++.....+ +..|..+|.+.++.|+.+|+.+|.++.... ...+. +...++.++
T Consensus 288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL 367 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 367 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Confidence 7789999999999988777655444 456778899999999999999999997543 22222 345666766
Q ss_pred ccCCCHHHHHHHHHHHHHHHhh-Chhh---H-H-HHHHhheecccCCCHHHHHHHHHHHhccC
Q 002905 288 LSQSDNNVKLIVLDRLNELRSS-HRDI---M-V-DLIMDVLRALNSPNLDIRRKTLDIVLELI 344 (867)
Q Consensus 288 ~~~sD~Nvk~ivL~~L~~L~~~-~p~~---l-~-~~~~~il~~L~d~d~~IR~kaLelL~~Lv 344 (867)
.+++..+|.-+...|..+... .++. + + ..+..++.+|.++|..|+..+|+.|..+.
T Consensus 368 -~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 368 -SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp -HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 677899999999999888753 2221 1 1 23444667889999999999999887653
No 43
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.02 E-value=1.1e-06 Score=102.34 Aligned_cols=316 Identities=15% Similarity=0.166 Sum_probs=222.7
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCC
Q 002905 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~-------s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l 90 (867)
.+.++.+.+.|++.+.+..+++.+-.+.....+- ..+.+..++++-.+++..++.-+-..+..++..+++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-- 154 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-- 154 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH--
Confidence 5789999999999999999998877666655432 2456778886645666778876665666664333211
Q ss_pred CchHHH---HHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHHH-----HHHHHHHhcCCCC-----hHHHHHHHHHH
Q 002905 91 LPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEP-----LIPSVLQNLQHRH-----PYIRRNAILAV 155 (867)
Q Consensus 91 ~~EmiL---v~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e~-----L~~~V~~~L~d~~-----pyVRK~A~lal 155 (867)
...+. ++..|.+=|.++++.+|-.|+.+|++|. .++.-.. .++.+..+|.+.+ ..+.++|+.++
T Consensus 155 -~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 155 -TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp -HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred -HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 01222 5678888999999999999999999995 3443332 3677888886543 45788999999
Q ss_pred HHhhccCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhcCccch
Q 002905 156 MAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGE 219 (867)
Q Consensus 156 ~kI~~l~~~p~li-----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i~~~~p 219 (867)
..+.. ..+... ..+.+.+..+| .+.|+.++..|+.+|..+.... +++.|..++ ...++
T Consensus 234 ~nl~~--~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL---~~~~~ 307 (529)
T 3tpo_A 234 SNLCR--NKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL---GATEL 307 (529)
T ss_dssp HHHHC--CCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH---TCSCH
T ss_pred HHHHh--cccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh---cCCCh
Confidence 99887 332211 12334455655 7899999999999998875321 134455554 35677
Q ss_pred HHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHHcCCChHHHHHHHHHHHhcCCC-hHHHHH-----HHHHHHHHHc
Q 002905 220 LLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLL 288 (867)
Q Consensus 220 ~lQ~~iL~ll~~~~~~~p~~~~~l-----i~~L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~-----aa~~li~ll~ 288 (867)
-.|...+..++.++..++.....+ +..|..+|.+.++.|+.+|+.+|.++... +..... +...++.++
T Consensus 308 ~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL- 386 (529)
T 3tpo_A 308 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL- 386 (529)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHh-
Confidence 889999999999987776655443 46789999999999999999999998653 332222 345666666
Q ss_pred cCCCHHHHHHHHHHHHHHHhh-Chhh---HH--HHHHhheecccCCCHHHHHHHHHHHhcc
Q 002905 289 SQSDNNVKLIVLDRLNELRSS-HRDI---MV--DLIMDVLRALNSPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 289 ~~sD~Nvk~ivL~~L~~L~~~-~p~~---l~--~~~~~il~~L~d~d~~IR~kaLelL~~L 343 (867)
.+++..+|.-+...|..+... .++- +. ..+..++.+|.++|..++..+|+.|..+
T Consensus 387 ~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 387 SKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 678899999999999888753 2321 11 1344567788999999999999988765
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.93 E-value=9.2e-08 Score=98.66 Aligned_cols=205 Identities=15% Similarity=0.205 Sum_probs=125.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchh------
Q 002905 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD------ 201 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~------ 201 (867)
+|.+.+.|.+.++.+|..|+.++..+.. ..++... ...+.+-.+| .+.|+.++..|+.+|..+...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIAS--GPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 3445555555556666666666655554 3331111 1222233333 455555666666555555432
Q ss_pred -----hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHH-----HHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 002905 202 -----RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKG-----KYIKIIISLLNAPSTAVIYECAGTLVSLSS 271 (867)
Q Consensus 202 -----~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~-----~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~ 271 (867)
.+++.|..+++ ..++-.+..++..|..++..++..+. ..++.+.++|.+.++.|+..|+.+|.++..
T Consensus 81 ~~~~~~~i~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 12333333333 34556666666666666655544333 356778888888888899999999999876
Q ss_pred C-hHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHhheecccCCCHHHHHHHHHHH
Q 002905 272 A-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIV 340 (867)
Q Consensus 272 ~-p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~-----~~~~~il~~L~d~d~~IR~kaLelL 340 (867)
. +...+. +...+++++ .++++.++..++..|..+...++...+ ..+..+++++.+++..+|..++.+|
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3 322221 445666665 577889999999999998865554332 1345567778899999999999999
Q ss_pred hccC
Q 002905 341 LELI 344 (867)
Q Consensus 341 ~~Lv 344 (867)
..|+
T Consensus 237 ~~l~ 240 (252)
T 4hxt_A 237 ENIK 240 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 45
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.92 E-value=3e-08 Score=109.84 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHH
Q 002905 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTH 210 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~ 210 (867)
.+.+.|.+++.+++...||-.++++-.+-+ ..++.+ =+..-+.+=+ .++|+.++++|+.+|+.|....-++++...
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~--~~~e~i-Lv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~m~~~l~~~ 143 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSC--IAEDVI-IVTSSLTKDM-TGKEDSYRGPAVRALCQITDSTMLQAIERY 143 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTT--TSSCGG-GGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--CHHHHH-HHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 344555555555555555555555543333 212221 1222222222 445555555555555555433333333332
Q ss_pred hhh-cCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcc
Q 002905 211 VDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLS 289 (867)
Q Consensus 211 l~~-i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~ 289 (867)
+.+ +.+.+|...-.++=...++.+.+|+..+++++.+.+++.+.++.|+|.|..++..+.... +.+...++..+..
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---~~a~~kLv~~l~~ 220 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---RLAVSKMISKFTR 220 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---hHHHHHHHHHHhc
Confidence 222 234445444444444445556667666677888888999999999998888888886532 1234445555543
Q ss_pred C--CCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCc-H-HHHHHHHHHHHHHhh
Q 002905 290 Q--SDNNVKLIVLDRLNELRSSH-RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRN-I-NEVVLMLKKEVVKTQ 364 (867)
Q Consensus 290 ~--sD~Nvk~ivL~~L~~L~~~~-p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~N-v-~~IV~~L~kel~~~~ 364 (867)
. .++-.....++.+..+...+ |..-.++..-+..+|.+.+..|--.|...++.+-+... . ...+..|...+.
T Consensus 221 ~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLs--- 297 (355)
T 3tjz_B 221 HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCS--- 297 (355)
T ss_dssp SCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHH---
T ss_pred CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHc---
Confidence 2 24555555566555555555 55445555667778899999999999999998865211 1 112222222222
Q ss_pred cCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHH
Q 002905 365 SGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIF 418 (867)
Q Consensus 365 ~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~ 418 (867)
..+++.|=.+++.|..++.++|.....+-..+.+++.|++..++.-++..
T Consensus 298 ----s~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 298 ----SPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp ----SSSSSSHHHHHHCC------------------------------------
T ss_pred ----CCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHH
Confidence 24568999999999999999999999999999999999998777666643
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.84 E-value=5.5e-07 Score=92.74 Aligned_cols=208 Identities=16% Similarity=0.217 Sum_probs=158.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHH-----HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIE-----PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV- 169 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e-----~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~- 169 (867)
+..|.+-|+++++.+|-.|++.|+++. .++... ..++.+.+.|.+.++.||..|+.++..+.. .+++...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc--CChHHHHH
Confidence 466778889999999999999999984 232222 368889999999999999999999999988 5454332
Q ss_pred ----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhh
Q 002905 170 ----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCR 234 (867)
Q Consensus 170 ----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~ 234 (867)
...+.+-.+| .+.|+.++.+|+.+|..+.... +++.|..++ ...++..+...+..|..++.
T Consensus 82 ~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 82 IVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL---TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH---cCCCHHHHHHHHHHHHHHHc
Confidence 2345555655 7889999999999999987321 234444444 45678899999999999998
Q ss_pred cCchhHH-----HHHHHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHH
Q 002905 235 TNKGEKG-----KYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRL 303 (867)
Q Consensus 235 ~~p~~~~-----~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L 303 (867)
.++..+. ..++.+.++|.+.++.|+..|+.+|..+.. ++...+. +...+++++ .++++.+|..++..|
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL-TSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-CCCcHHHHHHHHHHH
Confidence 7665433 367899999999999999999999999976 3433322 345566655 678999999999999
Q ss_pred HHHHhhChh
Q 002905 304 NELRSSHRD 312 (867)
Q Consensus 304 ~~L~~~~p~ 312 (867)
..|....+.
T Consensus 237 ~~l~~~~~~ 245 (252)
T 4hxt_A 237 ENIKSGGWL 245 (252)
T ss_dssp HHHHHTCBC
T ss_pred HHHHcCCCc
Confidence 999875543
No 47
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.80 E-value=9.1e-07 Score=101.44 Aligned_cols=349 Identities=11% Similarity=0.116 Sum_probs=197.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCC--chhh----HH-HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc--
Q 002905 99 QNLRNNLQHPNEYIRGVTLRFLCRLN--ETEI----IE-PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-- 169 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~--~~el----~e-~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-- 169 (867)
..+.+-|+++|+.++..|..+|.++. ++.. ++ -.+|.+.++|.++++.+++.|+.|+..+.. ..++...
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~--~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHHH
Confidence 34555667788888888888888764 2222 22 257899999999999999999999999987 4443322
Q ss_pred ---chHHHHHHHHccCCChhHHHHHHHHHHhcchh---------hHHHHHHHHhhh------cCc-------cchHHHHH
Q 002905 170 ---DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---------RAINYLLTHVDR------VSE-------WGELLQMV 224 (867)
Q Consensus 170 ---d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~---------~al~~L~~~l~~------i~~-------~~p~lQ~~ 224 (867)
...+.+-++|....|+.++.+|..+|..+... .+++.|..++.. -.. .++-++..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 12344556663377899999999999876532 245566666621 000 23344557
Q ss_pred HHHHHHHhhhcCchhHH------HHHHHHHHHHcC------CChHHHHHHHHHHHhcCCChH-----HHHHHHH------
Q 002905 225 VLELIRKVCRTNKGEKG------KYIKIIISLLNA------PSTAVIYECAGTLVSLSSAPT-----AIRAAAN------ 281 (867)
Q Consensus 225 iL~ll~~~~~~~p~~~~------~li~~L~~lL~s------~s~aV~~eaa~tL~~Ls~~p~-----~lk~aa~------ 281 (867)
....|+.++.. |+.+. ..++.|..+|++ .+..++-.|+.+|..++...+ .......
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 78888888865 55443 345567777764 233355555666655542110 0000000
Q ss_pred ---HHHHHHccCCCHHHHHHHHHH-----------HHHHHhhChhhHHHHHHhheeccc-CCCHHHHHHHHHHHhccCCC
Q 002905 282 ---TYSQLLLSQSDNNVKLIVLDR-----------LNELRSSHRDIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 282 ---~li~ll~~~sD~Nvk~ivL~~-----------L~~L~~~~p~~l~~~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~ 346 (867)
.....+-..+. .++--..+. ...+ .+++++.. ++.+|. +.++.++..+.-.|..++..
T Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~l~~----L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 242 TEKSSTGCFSNKSD-KMMNNNYDCPLPEEETNPKGSGWL--YHSDAIRT----YLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGG--GSHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred ccccccchhhccch-hhhhccccCCccccccCchHHHHH--hCcchHHH----HHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 00000000000 000000000 0000 12223322 233332 34567777777777777653
Q ss_pred Cc-----H-H------HHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc----HHHHHHHHHHHHcCCCc-
Q 002905 347 RN-----I-N------EVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV----ASTVVHLLMDFLGDSNV- 409 (867)
Q Consensus 347 ~N-----v-~------~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~----a~~~v~~Ll~lL~~~~~- 409 (867)
.+ + + .+++.|.+ +.. ..+.++++.++.+|..++. .+.. ...++..|+++|....+
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~-LL~------~~~~~v~~~A~~aL~nls~-~~~~~~~i~~~~i~~Lv~lL~~~~~~ 386 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIAR-LLQ------SGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLLTSHTGN 386 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHH-HTT------CSCHHHHHHHHHHHHHHHT-SGGGHHHHHHHTHHHHHHTTTSCCSC
T ss_pred cCcchHHHHHHHHHHcCCchHHHH-HHh------CCCHhHHHHHHHHHHHHhc-CHHHHHHHHHhhhHHHHHhccCCCCC
Confidence 21 1 1 12333332 221 2356778888888877764 2222 24677888888887643
Q ss_pred -----ccHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHhcccchHhHHHHHhhHhhccCCCCC
Q 002905 410 -----ASAIDVIIFVREIIEMNPKLRV-----SIITRLLDNFYQIRAARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 410 -----~v~~evi~~l~~ii~~~p~lr~-----~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~ 465 (867)
.+...++..+.+++...|+... ..+.+|.+.+.+-..+++++.+.|+|..|..+.+
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 2444556678888877776543 4678888887764367899999999999976543
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.79 E-value=1.6e-07 Score=97.47 Aligned_cols=215 Identities=17% Similarity=0.212 Sum_probs=145.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCc--hhhH-----HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEII-----EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~~--~el~-----e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d 170 (867)
-+.+.+.|+|+|+.+|-.|++.|+++-. ++-. ...+|.+.+.|.+.++.||..|+.++..+.. .+++....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~ 91 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQA 91 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHH
Confidence 3778889999999999999998866432 2211 2367889999999999999999999999987 44433221
Q ss_pred -----hHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHH
Q 002905 171 -----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIK 245 (867)
Q Consensus 171 -----~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~ 245 (867)
..+.+-.+| .+.|+.++.+|+.+|..+....... +..++ ....++
T Consensus 92 i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~----------------~~~~~-------------~~~~i~ 141 (252)
T 4db8_A 92 VIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ----------------IQAVI-------------DAGALP 141 (252)
T ss_dssp HHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHH----------------HHHHH-------------HTTHHH
T ss_pred HHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchH----------------HHHHH-------------HCCCHH
Confidence 234444544 6677888888887777764432110 00000 012446
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCC-hHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH----
Q 002905 246 IIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV---- 315 (867)
Q Consensus 246 ~L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~---- 315 (867)
.|.++|++.++.|+.+|+.+|.++... +...+. +...+++++ .++++.++..++..|..|...++...+
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 220 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKE 220 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 677777888888888888888888753 222222 345566655 566888888888888888765554322
Q ss_pred -HHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002905 316 -DLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 316 -~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
..+..++.++.++++.+|+.|+..|..|++
T Consensus 221 ~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 221 AGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 134456778889999999999999998874
No 49
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.72 E-value=2.7e-05 Score=95.24 Aligned_cols=355 Identities=14% Similarity=0.124 Sum_probs=218.4
Q ss_pred CCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHH-HHHHHHhhcCCCCCCCc
Q 002905 14 GTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLL-LYLEIIDKTDAKGRVLP 92 (867)
Q Consensus 14 ~~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Y-lyl~~~~~~d~dg~l~~ 92 (867)
.+...+..+|..+++.+. ..-.|..=.=..|-.|.....++..=...+ . ++....|++= ..+..+-.-+. .
T Consensus 320 ~d~~~l~~~K~~ld~r~s-~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl-~-k~~~~~k~sA~aSLGlIh~g~~-----~ 391 (963)
T 4ady_A 320 IDIGLLNKSKSSLDGKFS-LFHTAVSVANGFMHAGTTDNSFIKANLPWL-G-KAQNWAKFTATASLGVIHKGNL-----L 391 (963)
T ss_dssp CCHHHHHHHHHHSCTTSH-HHHHHHHHHHHHHTTTTCCCHHHHHCHHHH-H-HCCTHHHHHHHHHHHHHTSSCT-----T
T ss_pred cchhhHHHHHhhhcchhh-HHHHHHHHHHHHHhCCCCcchhhhcchhhh-h-ccchHHHHHHHHHhhhhccCch-----H
Confidence 344455677777775431 111223223335666766555443322222 1 1222223332 22333322221 1
Q ss_pred hHHHHHHHHHHhcC---CCCHHHHHHHHHHhhcCCch---hhHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHh
Q 002905 93 EMILICQNLRNNLQ---HPNEYIRGVTLRFLCRLNET---EIIEPLIPSVLQNLQHR--------HPYIRRNAILAVMAI 158 (867)
Q Consensus 93 EmiLv~NsL~KDL~---~pNe~IRglALr~Ls~I~~~---el~e~L~~~V~~~L~d~--------~pyVRK~A~lal~kI 158 (867)
+ ....|.+-|- +.++++|+-||-.||-+..- +..+.|.+ .|.+. ++.||.-|+++++-+
T Consensus 392 ~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~----~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 392 E---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKN----IIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp T---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHH----HHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHH----HHcCccccccccccHHHHHHHHHHHHHH
Confidence 2 2355566665 77899999999999987533 34444444 44433 389999999999998
Q ss_pred hccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc----chhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhh
Q 002905 159 YKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC----DQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCR 234 (867)
Q Consensus 159 ~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei----~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~ 234 (867)
|- -.. -+++.+.|...| .+.+..+...|..+|..+ +...+++-|.+.+.. ...++|..- +.--|+.+..
T Consensus 465 ~~--GS~--~eev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-~~~e~vrR~-aalgLGll~~ 537 (963)
T 4ady_A 465 AM--GSA--NIEVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-TQHGNITRG-LAVGLALINY 537 (963)
T ss_dssp ST--TCC--CHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-CSCHHHHHH-HHHHHHHHTT
T ss_pred hc--CCC--CHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-cCcHHHHHH-HHHHHHhhhC
Confidence 86 221 134456666666 455565565677777655 334566655554432 234566444 3344555555
Q ss_pred cCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHh--cC-CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCh
Q 002905 235 TNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVS--LS-SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR 311 (867)
Q Consensus 235 ~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~--Ls-~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p 311 (867)
.+++....+++.+. .+.++.|+|.++.++.- .. .++ .++..++..+.++.+..||-.+.-.|..+....|
T Consensus 538 g~~e~~~~li~~L~---~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 538 GRQELADDLITKML---ASDESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TCGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred CChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 56666666666554 46788999999888752 32 234 3555677777788889999999999999877777
Q ss_pred hhHHHHHHhhee-cccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC
Q 002905 312 DIMVDLIMDVLR-ALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP 390 (867)
Q Consensus 312 ~~l~~~~~~il~-~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~ 390 (867)
+...+ ++. ...+.|+.||+-+.-.+..++....-..+++.|.+ +.+ |.+..+|+.++.++|.++..-.
T Consensus 611 e~v~r----lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~-L~~------D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 611 TTVPR----IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP-LTK------DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp SSHHH----HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH-HHT------CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHH----HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH-Hcc------CCCHHHHHHHHHHHHHHhcCCc
Confidence 65444 333 34578999999988888877766666778886653 332 6789999999999999886433
Q ss_pred ----ccHHHHHHHHHHHHcCCC
Q 002905 391 ----EVASTVVHLLMDFLGDSN 408 (867)
Q Consensus 391 ----~~a~~~v~~Ll~lL~~~~ 408 (867)
+........|.++..+..
T Consensus 680 na~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 680 EKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp TTTCTTHHHHHHHHHHHHHCSS
T ss_pred cccchHHHHHHHHHHHHHhccc
Confidence 245667777777776533
No 50
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.71 E-value=5.5e-06 Score=97.49 Aligned_cols=341 Identities=14% Similarity=0.123 Sum_probs=197.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCC--chh----hHH-HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCC-Cccc--
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN--ETE----IIE-PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ-GEQL-- 167 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~--~~e----l~e-~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~-~p~l-- 167 (867)
+..+.+-|.++++-++-.|..+|.++. .++ +++ -.+|.++++|.+.++.|+..|+.|+..+-. . +++-
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~--~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF--GRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS--SSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc--cCCHHHHH
Confidence 355666788999999988888887764 332 222 257999999999999999999999999976 3 2322
Q ss_pred -ccc--hHHHHHHHHccCCChhHHHHHHHHHHhcchhh---------HHHHHHHHhhh---------------cCccchH
Q 002905 168 -LVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR---------AINYLLTHVDR---------------VSEWGEL 220 (867)
Q Consensus 168 -i~d--~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~---------al~~L~~~l~~---------------i~~~~p~ 220 (867)
+-+ ..+.+-.+|....+..++.+|..+|..+.... +++.|.+++-. ....++-
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 111 23444456645578889999988888775321 24444443310 0111344
Q ss_pred HHHHHHHHHHHhhhcCchhHHHH------HHHHHHHHcC------CChHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHH
Q 002905 221 LQMVVLELIRKVCRTNKGEKGKY------IKIIISLLNA------PSTAVIYECAGTLVSLSSAPTA-IRAAANTYSQLL 287 (867)
Q Consensus 221 lQ~~iL~ll~~~~~~~p~~~~~l------i~~L~~lL~s------~s~aV~~eaa~tL~~Ls~~p~~-lk~aa~~li~ll 287 (867)
++......|+.++..++..+..+ ++.|..+|++ .+..++-.|+.+|.+|+..-+. +.. ...+....
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~-~~~~~~~~ 286 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ-AERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT-CCC-----
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc-hhhhhhhc
Confidence 55666666666665554433333 2345555543 2344556666666555432100 000 00000000
Q ss_pred ccCCCHHHHHHHHHHHHHHHh--------hChhhHHHHHHhheeccc-CCCHHHHHHHHHHHhccCCCC-----cHH---
Q 002905 288 LSQSDNNVKLIVLDRLNELRS--------SHRDIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITPR-----NIN--- 350 (867)
Q Consensus 288 ~~~sD~Nvk~ivL~~L~~L~~--------~~p~~l~~~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~~-----Nv~--- 350 (867)
.++ |. ..... .+|.++.. ++.+|. ..+..++..|...|..|+..+ .+.
T Consensus 287 --~~~-~~--------~~~~~~~~Gve~L~~~~~v~~----Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v 351 (584)
T 3l6x_A 287 --PNV-AN--------NTGTSPARGYELLFQPEVVRI----YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSAL 351 (584)
T ss_dssp --------------------CCCCGGGGGGSHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred --ccc-cc--------cccccCchhHHHHhcccHHHH----HHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHH
Confidence 000 00 00000 12333322 333442 346778888888887776432 222
Q ss_pred ---HHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc----HHHHHHHHHHHHcCCC--------cccHHHH
Q 002905 351 ---EVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV----ASTVVHLLMDFLGDSN--------VASAIDV 415 (867)
Q Consensus 351 ---~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~----a~~~v~~Ll~lL~~~~--------~~v~~ev 415 (867)
..++.|.+ |.. ..+.+.++.++.+|+.++. .+.. ...++..|+.+|..+. ..+...+
T Consensus 352 ~~~~glp~Lv~-LL~------s~~~~v~~~A~~aL~nLs~-~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a 423 (584)
T 3l6x_A 352 RQEKALSAIAD-LLT------NEHERVVKAASGALRNLAV-DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISI 423 (584)
T ss_dssp TSHHHHHHHHH-GGG------CSCHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHH
T ss_pred HHcCcHHHHHH-HHc------CCCHHHHHHHHHHHHHHhC-ChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHH
Confidence 23444432 222 2356788888888888874 2222 2467788888888763 2345556
Q ss_pred HHHHHHHHHhCcccHHH-----HHHHHHHHhccc-chHhHHHHHhhHhhccCCCC
Q 002905 416 IIFVREIIEMNPKLRVS-----IITRLLDNFYQI-RAARVCTCALWIIGEYCQSL 464 (867)
Q Consensus 416 i~~l~~ii~~~p~lr~~-----il~~L~~~L~~i-~~~~v~~~alWiLGEY~~~~ 464 (867)
+..+.+++..+|+.+.. .+..|+..+.+- ..+++.+.|.|++.....+.
T Consensus 424 ~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 424 LNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 67788888777776554 578888888763 36789999999999876644
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.63 E-value=1.3e-06 Score=90.62 Aligned_cols=209 Identities=18% Similarity=0.180 Sum_probs=135.8
Q ss_pred CchhHHHHHhhcCCCCcchHHHHHHHHHH-HhhcCCCCCCCchHH--HHHHHHHHhcCCCCHHHHHHHHHHhhcCCc--h
Q 002905 52 PQLFITIVRYVLPSEDHTIQKLLLLYLEI-IDKTDAKGRVLPEMI--LICQNLRNNLQHPNEYIRGVTLRFLCRLNE--T 126 (867)
Q Consensus 52 s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~-~~~~d~dg~l~~Emi--Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~--~ 126 (867)
.+.|..+++ .+.|+|.+.+.-+--.+.. +.. ++.. +..++ =++..|.+-|+++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~~~~-~L~s~~~~~~~~a~~~L~~~l~~-~~~~--~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQ-QLNSDDMQEQLSATRKFSQILSD-GNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHH-HHHSSCSSHHHHHHHHHHHHHHH-HHHH--HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHH-HHcCCCHHHHHHHHHHHHHHHcC-CCch--HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 344555555 3356666665555444422 211 1100 01111 155778888899999999999999999975 3
Q ss_pred hhHHH-----HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHH
Q 002905 127 EIIEP-----LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLF 196 (867)
Q Consensus 127 el~e~-----L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li-----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ 196 (867)
+..+. .+|.+.+.|.+.++.||+.|+.++..+.. ..+... ....+.+-++| .+.|+.++.+|+.+|.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALS 163 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc--CCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 33322 68899999999999999999999999987 444321 12345555655 7889999999999999
Q ss_pred hcchhh-----------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHH-----HHHHHHHHHcCCChHHHH
Q 002905 197 TCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK-----YIKIIISLLNAPSTAVIY 260 (867)
Q Consensus 197 ei~~~~-----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~-----li~~L~~lL~s~s~aV~~ 260 (867)
.+.... +++.|..++ ...++..+..++..|..++..++..+.. .++.+.+++++.++.|+.
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGG---GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHH---CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHH
Confidence 886421 123333333 3446677777777777777666554433 345566677777777777
Q ss_pred HHHHHHHhcC
Q 002905 261 ECAGTLVSLS 270 (867)
Q Consensus 261 eaa~tL~~Ls 270 (867)
+|+.+|.++.
T Consensus 241 ~A~~~L~~l~ 250 (252)
T 4db8_A 241 EAQEALEKLQ 250 (252)
T ss_dssp THHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 52
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.51 E-value=3.9e-05 Score=87.83 Aligned_cols=320 Identities=12% Similarity=0.080 Sum_probs=212.9
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCC
Q 002905 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~-------s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l 90 (867)
.+..+-+.|.+++.+.+..|...+-. +..+.+- ..+.+..++ ++.+++..+++-+--.+..+...+++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~-l~~~~~~~~~~i~~~g~i~~Lv~-lL~s~~~~~~~~A~~aL~nLa~~~~~~-- 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQH-TCFQDESAKQQVYQLGGICKLVD-LLRSPNQNVQQAAAGALRNLVFRSTTN-- 78 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHH-HTSSCSSHHHHHHHTTHHHHHHH-HTTSSCHHHHHHHHHHHHHHHSSCHHH--
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHH-HHcCChHHHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhcCCHHH--
Confidence 46678889999999999888876554 4444432 345677888 558889889888877777775432221
Q ss_pred CchHHH---HHHHHHHhcC-CCCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhcC--------C--------CCh
Q 002905 91 LPEMIL---ICQNLRNNLQ-HPNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNLQ--------H--------RHP 145 (867)
Q Consensus 91 ~~EmiL---v~NsL~KDL~-~pNe~IRglALr~Ls~I~~-----~el~e~L~~~V~~~L~--------d--------~~p 145 (867)
+. .+. ++..|.+=|. ++++.++-.|..+|+++.. ..+++-.+|.+.++|. + .++
T Consensus 79 k~-~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 79 KL-ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HH-HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HH-HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccH
Confidence 11 222 2567777788 8899999999888887753 1244467888888882 2 357
Q ss_pred HHHHHHHHHHHHhhccCCCccccc------chHHHHHHHHcc-----CCChhHHHHHHHHHHhcchh-------------
Q 002905 146 YIRRNAILAVMAIYKLPQGEQLLV------DAPEMIEKVLST-----EQDPSAKRNAFLMLFTCDQD------------- 201 (867)
Q Consensus 146 yVRK~A~lal~kI~~l~~~p~li~------d~~~ll~~lL~~-----D~D~~v~~~A~~~L~ei~~~------------- 201 (867)
.|+++|+.|+..+.. . |+... .+.+.+-.+|.. +.|..++.+|+.+|..+...
T Consensus 158 ~v~~~a~~aL~nLs~--~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 158 EVFFNATGCLRNLSS--A-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp HHHHHHHHHHHHHTT--S-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcc--C-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 788899999999987 4 43221 223333344421 24556777777766654310
Q ss_pred ------------------------------------------------hHHHHHHHHhhhcCccchHHHHHHHHHHHHhh
Q 002905 202 ------------------------------------------------RAINYLLTHVDRVSEWGELLQMVVLELIRKVC 233 (867)
Q Consensus 202 ------------------------------------------------~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~ 233 (867)
.+++.|..++.. ..+|-.+......|..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~~~~e~a~~aL~nl~ 312 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLT 312 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh--cCCHHHHHHHHHHHHHhc
Confidence 012333333332 234666777788888887
Q ss_pred hcCchh-----H-----HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH---H-HHHHHHHHHHHccCCC------H
Q 002905 234 RTNKGE-----K-----GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA---I-RAAANTYSQLLLSQSD------N 293 (867)
Q Consensus 234 ~~~p~~-----~-----~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~---l-k~aa~~li~ll~~~sD------~ 293 (867)
..+... + ...++.|.++|++.+..|+.+|+.+|.+++.++.. + +.+..+++++|.. ++ .
T Consensus 313 ~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~-~~~~~~~~~ 391 (457)
T 1xm9_A 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTS-HTGNTSNSE 391 (457)
T ss_dssp TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTS-CCSCSTTHH
T ss_pred cCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccC-CCCCCCCcH
Confidence 654321 1 23468899999999999999999999999766532 2 2356778888754 33 3
Q ss_pred HHHHHHHHHHHHHHhhChhhHH-----HHHHhheecccCC-CHHHHHHHHHHHhccCCCCc
Q 002905 294 NVKLIVLDRLNELRSSHRDIMV-----DLIMDVLRALNSP-NLDIRRKTLDIVLELITPRN 348 (867)
Q Consensus 294 Nvk~ivL~~L~~L~~~~p~~l~-----~~~~~il~~L~d~-d~~IR~kaLelL~~Lv~~~N 348 (867)
.+...++..|..+....+.... .-+..+..++.++ +..|+++|..+|..+...+.
T Consensus 392 ~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 6888899999998866554322 2244466677787 89999999999999887654
No 53
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.51 E-value=2.7e-06 Score=87.36 Aligned_cols=185 Identities=18% Similarity=0.182 Sum_probs=139.4
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchh--hH--HHHHHHHhh----hcCccchHHHHHHHHHHHHhhhc---Cchh
Q 002905 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--RA--INYLLTHVD----RVSEWGELLQMVVLELIRKVCRT---NKGE 239 (867)
Q Consensus 171 ~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~--~a--l~~L~~~l~----~i~~~~p~lQ~~iL~ll~~~~~~---~p~~ 239 (867)
...++..+| .|.|+.++.+|+.+|.++-.. .. ...+-++++ -..+.++-.-+..+++++.+-.. +|+.
T Consensus 34 ~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 345666766 899999999999999988655 11 222233333 23567888888889998887544 4566
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh--ChhhHHHH
Q 002905 240 KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS--HRDIMVDL 317 (867)
Q Consensus 240 ~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~--~p~~l~~~ 317 (867)
-.++.+.+.+++.+.+.....+++..+..+... ...+.+..-+.+++ ++.|+.+|-.+|..+..+..+ +|+++.+.
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~-~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I 190 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL-EDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLI 190 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS-CCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGT
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc-cchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 778889999999999999999999999998432 12344555555666 899999999999999999874 56777766
Q ss_pred HHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 002905 318 IMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKK 358 (867)
Q Consensus 318 ~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~k 358 (867)
...+-..|+++|++++.+||+++..+.+..=.++++..+.+
T Consensus 191 ~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 191 LDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp TTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 66666778999999999999999999987555555555543
No 54
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.49 E-value=2.7e-05 Score=89.32 Aligned_cols=242 Identities=14% Similarity=0.092 Sum_probs=143.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCchhh----HHH-HHHHHHHhcCCC------------ChHHHHHHHHHHHHhhcc
Q 002905 99 QNLRNNLQHPNEYIRGVTLRFLCRLNETEI----IEP-LIPSVLQNLQHR------------HPYIRRNAILAVMAIYKL 161 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~~el----~e~-L~~~V~~~L~d~------------~pyVRK~A~lal~kI~~l 161 (867)
..+...+.+.++--....|-.++ ++|+. .+. .+|.++++|.+. ++-+|..|+.|+..|-.
T Consensus 35 ~~l~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~- 111 (458)
T 3nmz_A 35 YSLLSMLGTHDKDDMSRTLLAMS--SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH- 111 (458)
T ss_dssp ----------CCHHHHHHHHHHH--SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH--cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc-
Confidence 45555555555443223333333 34443 221 577888888753 27999999999999998
Q ss_pred CCCcccccc-----hHHHH----------HHHHccC---CC--h-hH-------HHHHHHHHHhcchhh----------H
Q 002905 162 PQGEQLLVD-----APEMI----------EKVLSTE---QD--P-SA-------KRNAFLMLFTCDQDR----------A 203 (867)
Q Consensus 162 ~~~p~li~d-----~~~ll----------~~lL~~D---~D--~-~v-------~~~A~~~L~ei~~~~----------a 203 (867)
..|+.... +..++ -++|... .| . .| ..+|+.+|..+.-+. +
T Consensus 112 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 112 -SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190 (458)
T ss_dssp -HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred -cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 67765432 11111 1222110 11 0 03 237888888775321 3
Q ss_pred HHHHHHHhhh--------cCccchHHHHHHHHHHHHhhhcCchhHH------HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 002905 204 INYLLTHVDR--------VSEWGELLQMVVLELIRKVCRTNKGEKG------KYIKIIISLLNAPSTAVIYECAGTLVSL 269 (867)
Q Consensus 204 l~~L~~~l~~--------i~~~~p~lQ~~iL~ll~~~~~~~p~~~~------~li~~L~~lL~s~s~aV~~eaa~tL~~L 269 (867)
++.|..++.. ....++-+|..+...|+.++..++..+. -.++.|..+|.+.++.|...|+.+|.++
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5666666631 0113455788999999999987754332 3488999999999999999999999999
Q ss_pred CCC--hH---HHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC----hhhH--HHHHHhheecccCCCH----HH
Q 002905 270 SSA--PT---AIR--AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH----RDIM--VDLIMDVLRALNSPNL----DI 332 (867)
Q Consensus 270 s~~--p~---~lk--~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~----p~~l--~~~~~~il~~L~d~d~----~I 332 (867)
+.. +. .+. .+...++++|..+++..++-.++..|..|.... +.+. ..-+..++..|.+++. .+
T Consensus 271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v 350 (458)
T 3nmz_A 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 350 (458)
T ss_dssp TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence 752 32 222 245788998877788899998888888887522 2222 1223334455554433 47
Q ss_pred HHHHHHHHhccC
Q 002905 333 RRKTLDIVLELI 344 (867)
Q Consensus 333 R~kaLelL~~Lv 344 (867)
+..+.-+|..|+
T Consensus 351 ~~~A~~aL~nLs 362 (458)
T 3nmz_A 351 IESGGGILRNVS 362 (458)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.38 E-value=1.6e-07 Score=88.68 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=85.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
..+.+.+.|+|+|+.+|..|++.|++++.+. ++.+.++|.|+++.||..|+.++.++.. + ...+.+.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~----~----~a~~~L~ 79 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD----E----RAVEPLI 79 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----H----HHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----H----HHHHHHH
Confidence 4467788899999999999999999998875 3677889999999999999999988754 2 2334454
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHH
Q 002905 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIR 230 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~ 230 (867)
.+| .|.|+.|+..|+.+|..+....+++.|...++ +.+++.+..+.+.|.
T Consensus 80 ~~L-~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~---d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 80 KLL-EDDSGFVRSGAARSLEQIGGERVRAAMEKLAE---TGTGFARKVAVNYLE 129 (131)
T ss_dssp HHH-HHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTT---SCCTHHHHHHHHHGG
T ss_pred HHH-cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 555 78899999999999998887667777766654 456776766666554
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.37 E-value=0.00013 Score=85.84 Aligned_cols=329 Identities=12% Similarity=0.094 Sum_probs=213.6
Q ss_pred CcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCC-C------CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhc-CC
Q 002905 15 TPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGET-L------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKT-DA 86 (867)
Q Consensus 15 ~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d-~------s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~-d~ 86 (867)
..+.+..+-+.|.+++...+.+|...| ..+..|.+ . ..+.+..|+ ++.+.+..++.-+--++..++.. ++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L-~~La~~~~~~k~~V~~~G~Ip~LV~-LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYL-QHLCYRNDKVKTDVRKLKGIPVLVG-LLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHH-HHHHTTCHHHHHHHHHTTHHHHHHH-GGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHH-HHHHcCChHHHHHHHHcCCcHHHHH-HHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 356788999999999999999888654 44444432 1 346777888 56899999999888888877543 22
Q ss_pred CCCCCchHHH---HHHHHHHhcCC-CCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhc-----------------
Q 002905 87 KGRVLPEMIL---ICQNLRNNLQH-PNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNL----------------- 140 (867)
Q Consensus 87 dg~l~~EmiL---v~NsL~KDL~~-pNe~IRglALr~Ls~I~~-----~el~e~L~~~V~~~L----------------- 140 (867)
+.+ . .+. ++..|.+-|.+ +++.++..|..+|.++.. ..+++.-+|.+.+.+
T Consensus 124 ~nk--~-~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 124 DNK--I-AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp HHH--H-HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred HHH--H-HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 221 1 232 34556666665 567777665544444432 224444466666655
Q ss_pred -CCCChHHHHHHHHHHHHhhccCCCccccc------chHHHHHHHHc-----cCCChhHHHHHHHHHHhcchh-------
Q 002905 141 -QHRHPYIRRNAILAVMAIYKLPQGEQLLV------DAPEMIEKVLS-----TEQDPSAKRNAFLMLFTCDQD------- 201 (867)
Q Consensus 141 -~d~~pyVRK~A~lal~kI~~l~~~p~li~------d~~~ll~~lL~-----~D~D~~v~~~A~~~L~ei~~~------- 201 (867)
....+.|+++|+-||..+-. .+++... ...+.+-.+|. .+.+...+.+|+.+|..++-.
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~--~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSS--ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTS--SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cccccHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 12357999999999999977 5543111 11222223332 235667788888888653211
Q ss_pred -----------------------------hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCch---h------HHHH
Q 002905 202 -----------------------------RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG---E------KGKY 243 (867)
Q Consensus 202 -----------------------------~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~---~------~~~l 243 (867)
.+++.|..++.. ...+..|......|..+|..+.. . ...-
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~--s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g 356 (584)
T 3l6x_A 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE--SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356 (584)
T ss_dssp CCC--------------CCCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence 123445555543 23577788888889888765421 1 1355
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCh---HHH-HHHHHHHHHHHccCC-------CHHHHHHHHHHHHHHHhhChh
Q 002905 244 IKIIISLLNAPSTAVIYECAGTLVSLSSAP---TAI-RAAANTYSQLLLSQS-------DNNVKLIVLDRLNELRSSHRD 312 (867)
Q Consensus 244 i~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p---~~l-k~aa~~li~ll~~~s-------D~Nvk~ivL~~L~~L~~~~p~ 312 (867)
++.|..+|.+.+..|+..|+.+|.+|+..+ ..+ ..+...++++|...+ ...+..-++..|..|...++.
T Consensus 357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~ 436 (584)
T 3l6x_A 357 LSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436 (584)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH
Confidence 899999999999999999999999986543 223 346677888876542 356788899999888765554
Q ss_pred hHH-----HHHHhheecccCC--CHHHHHHHHHHHhccCCCCcHHHH
Q 002905 313 IMV-----DLIMDVLRALNSP--NLDIRRKTLDIVLELITPRNINEV 352 (867)
Q Consensus 313 ~l~-----~~~~~il~~L~d~--d~~IR~kaLelL~~Lv~~~Nv~~I 352 (867)
--+ .-+..++.+|.+. ...+++-|--+|..|++.+.....
T Consensus 437 ~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~ 483 (584)
T 3l6x_A 437 AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKP 483 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHH
Confidence 222 1344456666664 788999999999999886555443
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.35 E-value=1.3e-05 Score=80.67 Aligned_cols=176 Identities=19% Similarity=0.277 Sum_probs=107.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHH-----HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc--
Q 002905 99 QNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIE-----PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-- 169 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e-----~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-- 169 (867)
..|.+=|+|+|+.+|..|++.|+++. .++..+ ..+|.+.++|.+.++.||..|+.++..+.. ..++...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i 92 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAV 92 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 45667788999999999999999886 233332 367899999999999999999999999976 4443321
Q ss_pred ---chHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHH
Q 002905 170 ---DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKI 246 (867)
Q Consensus 170 ---d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~ 246 (867)
...+.+-.+| .+.|+.++..|+.+|..+.....-. ...++ ....++.
T Consensus 93 ~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~----------------~~~~~-------------~~~~i~~ 142 (210)
T 4db6_A 93 IDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ----------------IQAVI-------------DAGALPA 142 (210)
T ss_dssp HHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH----------------HHHHH-------------HTTHHHH
T ss_pred HHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHH----------------HHHHH-------------HcCcHHH
Confidence 2334444555 7778888888888888776321100 00000 0123344
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCC-hHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 002905 247 IISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELR 307 (867)
Q Consensus 247 L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~ 307 (867)
|..+|++.++.|+..|+.+|.++... +...+. +...+++++ .++++.+|.-++..|..|.
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHh
Confidence 55555555555666666666655433 221111 233444433 4556666666666665553
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.29 E-value=2e-05 Score=79.33 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=122.5
Q ss_pred CCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHH---HHHHHHHhcCCCCHHHHHHHHHHhhcCC
Q 002905 48 GETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLN 124 (867)
Q Consensus 48 G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiL---v~NsL~KDL~~pNe~IRglALr~Ls~I~ 124 (867)
|+......+.+++ ++.++|..++.-+...+..+...+++. + +.+. ++..+.+-|.++++.+|..|+++|+++.
T Consensus 7 ~~~~~~~~~~l~~-LL~s~~~~v~~~a~~~L~~l~~~~~~~--~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 7 HHHHGSELPQMVQ-QLNSPDQQELQSALRKLSQIASGGNEQ--I-QAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp ------CHHHHHH-HTTCSCHHHHHHHHHHHHHHHTSCHHH--H-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccccchhHHHHH-HhcCCCHHHHHHHHHHHHHHHcCCHHH--H-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444555666666 568888888888877777774333221 1 1222 5678888899999999999999999996
Q ss_pred --chhhHHH-----HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-----chHHHHHHHHccCCChhHHHHHH
Q 002905 125 --ETEIIEP-----LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNAF 192 (867)
Q Consensus 125 --~~el~e~-----L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-----d~~~ll~~lL~~D~D~~v~~~A~ 192 (867)
.++..+. .+|.+.++|.+.++.||+.|+.++..+.. ..++... .+.+.+-.+| .+.|+.++..|+
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~ 159 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLL-SSPNEQILQEAL 159 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHH
Confidence 3443333 56899999999999999999999999987 5554321 2334444544 667888888888
Q ss_pred HHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 002905 193 LMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS 270 (867)
Q Consensus 193 ~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls 270 (867)
.+|..+.... +..+..+. ....++.|.+++.+.++.|+.+|+.+|..+.
T Consensus 160 ~aL~~l~~~~----------------~~~~~~~~-------------~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 160 WALSNIASGG----------------NEQKQAVK-------------EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTSC----------------HHHHHHHH-------------HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCC----------------cHHHHHHH-------------HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 8777664331 11010000 1134566677777777778877777777664
No 59
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.27 E-value=1.3e-05 Score=83.41 Aligned_cols=185 Identities=11% Similarity=0.167 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc----chHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002905 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 126 ~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
.++...+-+.+.+.+.+.+..+|+.|+.++..+.. ..|.+.. ++.+.+.+.|.+|.|+.|+..|+.+|..+...
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~--~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLT--DHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHH--HCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHc--cCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 34445555678889999999999999999999988 5444332 33455555553499999999999888776532
Q ss_pred hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHH
Q 002905 202 RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAAN 281 (867)
Q Consensus 202 ~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~ 281 (867)
. . ..+. .....++..+...+...++.|+..|+.++..+..... +..+..
T Consensus 88 l---------~--~~~~-------------------~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~ll~ 136 (242)
T 2qk2_A 88 L---------A--KRFS-------------------NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEAQQE 136 (242)
T ss_dssp H---------G--GGGH-------------------HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HHHHHH
T ss_pred H---------h--hhHH-------------------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 1 1 0011 1223566777778888888888888888777644321 345556
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHhhC-hh-----hHHHHHHhheecccCCCHHHHHHHHHHHhccC
Q 002905 282 TYSQLLLSQSDNNVKLIVLDRLNELRSSH-RD-----IMVDLIMDVLRALNSPNLDIRRKTLDIVLELI 344 (867)
Q Consensus 282 ~li~ll~~~sD~Nvk~ivL~~L~~L~~~~-p~-----~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv 344 (867)
.+...+ +++++.+|.-++..|..+...+ |. .+...+..++.+|+|++..||..|.+.+..++
T Consensus 137 ~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 137 SIVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 666654 6778999999999999976554 43 33455566777899999999999999888654
No 60
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.20 E-value=0.00014 Score=90.28 Aligned_cols=394 Identities=11% Similarity=0.042 Sum_probs=198.6
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC-------chhhH
Q 002905 57 TIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEII 129 (867)
Q Consensus 57 ~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~-------~~el~ 129 (867)
.+++.++.+.|...|+-+.-++..+.+ +| +....|-.+.. .++++.+|-.|+..|-+.. .++-.
T Consensus 28 ~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p------~~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~ 98 (963)
T 2x19_B 28 KALHQLYYDPNIENKNLAQKWLMQAQV-SP------QAWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTDQY 98 (963)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHH-ST------THHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhc-CH------HHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHHHH
Confidence 334333345677888888888887743 23 33333333432 3667888888877776532 12223
Q ss_pred HHHHHHHHHhcCC---CChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccC-----CChhHHHHHHHHHHhcchh
Q 002905 130 EPLIPSVLQNLQH---RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTE-----QDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 130 e~L~~~V~~~L~d---~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D-----~D~~v~~~A~~~L~ei~~~ 201 (867)
+.+-..+.+.+.+ ..++||.+.+.++..|.+. -+|+--|++.+-+-.++ .. .++..+..++..|..+..+
T Consensus 99 ~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~-~~p~~Wp~~l~~l~~~~-~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 99 ESLKAQLFTQITRFASGSKIVLTRLCVALASLALS-MMPDAWPCAVADMVRLF-QAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-HTTTTSTTHHHHHHHHH-CC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hCccccchHHHHHHHHH-hhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 3333334444332 3699999999999999884 23433344332232334 32 2555566666665544321
Q ss_pred -------------------hHHHH----HHHHhhhcCccchHHHHHHHHHHHHhhhcCchh--HHHHHHHHHHHHcCCCh
Q 002905 202 -------------------RAINY----LLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE--KGKYIKIIISLLNAPST 256 (867)
Q Consensus 202 -------------------~al~~----L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~--~~~li~~L~~lL~s~s~ 256 (867)
...+. +..++.+-. .+.++...+++.+..+.+..... ...+++.+.+.+. ++
T Consensus 177 ~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~-~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~ 253 (963)
T 2x19_B 177 FQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPS-SPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DS 253 (963)
T ss_dssp HTTCCC---------CCSGGGHHHHHHHHHHHHSCTT-CCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--ST
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--Cc
Confidence 01222 223332211 12367777888876655432222 2566777777764 34
Q ss_pred HHHHHHHHHHHhcCC---Ch---HHHHHHHHHHHHH------HccCCCHHHHHHHHHHHHHHHhhChhhH----------
Q 002905 257 AVIYECAGTLVSLSS---AP---TAIRAAANTYSQL------LLSQSDNNVKLIVLDRLNELRSSHRDIM---------- 314 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~---~p---~~lk~aa~~li~l------l~~~sD~Nvk~ivL~~L~~L~~~~p~~l---------- 314 (867)
.++..|+.++..+-. .+ ..+......++.. .....|....--..+.+..+...++..+
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred hHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH
Confidence 455555555554422 11 1222222222211 1123444433333344445544444333
Q ss_pred HHHHHhheecccC-----CCHHHHHHHHHHHhccCCC-----------------CcHHHHHHHHHHHHHHhhcCC----c
Q 002905 315 VDLIMDVLRALNS-----PNLDIRRKTLDIVLELITP-----------------RNINEVVLMLKKEVVKTQSGE----L 368 (867)
Q Consensus 315 ~~~~~~il~~L~d-----~d~~IR~kaLelL~~Lv~~-----------------~Nv~~IV~~L~kel~~~~~~~----~ 368 (867)
...+..++.+..+ .+..+...+++....++.. .-+..++..+...+. +.+.+ .
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~-~p~~~~~~~~ 412 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQ-FPSDEEYGFW 412 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCCcccccCC
Confidence 3334444444443 3556788888877666541 111222333332221 11100 0
Q ss_pred cC-----CHHHHHHHHHHHHHhHccCCc-cHHHHHHHHHHHHc----CCCcccHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 002905 369 EK-----NGEYRQMLIQAIHSCAIKFPE-VASTVVHLLMDFLG----DSNVASAIDVIIFVREIIEMNPKLRVSIITRLL 438 (867)
Q Consensus 369 d~-----d~e~r~~lI~aI~~la~kf~~-~a~~~v~~Ll~lL~----~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~ 438 (867)
+. -.+||+.+...+..++..+++ ....+++.+...+. ..+-...+.++..+..+.+.-++-....+..++
T Consensus 413 ~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~ 492 (963)
T 2x19_B 413 SSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLI 492 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Confidence 00 124678888888888766552 33344444444552 222223344566677776653322223455666
Q ss_pred HHhcccc--hHhHHHHHhhHhhccCCCCC
Q 002905 439 DNFYQIR--AARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 439 ~~L~~i~--~~~v~~~alWiLGEY~~~~~ 465 (867)
..+..+. .+.++..++|++|.|++...
T Consensus 493 ~~l~~l~~~~~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 493 GLIPRISISNVQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp HHGGGSCCCSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 6654443 57799999999999987643
No 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.17 E-value=0.00041 Score=68.68 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChh---HHHHHHHHHHhcchhhHHHHH
Q 002905 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPS---AKRNAFLMLFTCDQDRAINYL 207 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~---v~~~A~~~L~ei~~~~al~~L 207 (867)
.++..++..|.|.---|||||+.-+..+.+ ..|+++....+.+-.+|..+...- -...||-.+..+.|+.--...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~--~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHH--HhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence 345667788888888899999999998888 788777644333223332222211 133444444455555311111
Q ss_pred HHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHH
Q 002905 208 LTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRAAANTYSQL 286 (867)
Q Consensus 208 ~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~aa~~li~l 286 (867)
.-++......+|-..+.+--.+...++.||+....+.+-+..++.|.+..=...|-+.+..+.-+ +..+.-....++.+
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aL 189 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL 189 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGG
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHH
Confidence 11122222234554555555555555556655555555555555555544444444444444322 11111111222222
Q ss_pred HccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHH
Q 002905 287 LLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (867)
Q Consensus 287 l~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~ka 336 (867)
| .+.|.-||-.+.+.|..++..+|. +.+.+.+.+.-++|....+.++.
T Consensus 190 L-~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V 237 (253)
T 2db0_A 190 L-HDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTV 237 (253)
T ss_dssp G-GCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHH
T ss_pred H-cCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHH
Confidence 2 344444455555555555544444 34444444444444444444433
No 62
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.17 E-value=0.00019 Score=87.83 Aligned_cols=326 Identities=13% Similarity=0.038 Sum_probs=192.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcC---CCCcchHHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHHh
Q 002905 29 NDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLP---SEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRNN 104 (867)
Q Consensus 29 ~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~---S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em-iLv~NsL~KD 104 (867)
.+...|..|.--+ .++..| +...++-.+-+|+ + +.+..+|-=+.+.+... ....+ .|. -+..+.+..+
T Consensus 370 ~~~~~k~sA~aSL-GlIh~g-~~~~gl~~L~~yL-~~~~s~~~~ik~GAllaLGli--~ag~~---~~~~~lL~~~L~~~ 441 (963)
T 4ady_A 370 AQNWAKFTATASL-GVIHKG-NLLEGKKVMAPYL-PGSRASSRFIKGGSLYGLGLI--YAGFG---RDTTDYLKNIIVEN 441 (963)
T ss_dssp CCTHHHHHHHHHH-HHHTSS-CTTTHHHHHTTTS-TTSCCSCHHHHHHHHHHHHHH--TTTTT---HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh-hhhccC-chHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHHh--cCCCc---HHHHHHHHHHHcCc
Confidence 3444555555433 333344 3345666666655 5 56666777777777776 22222 232 2334444433
Q ss_pred cC--C--CCHHHHHHHHHHhhcC----CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch-HHHH
Q 002905 105 LQ--H--PNEYIRGVTLRFLCRL----NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-PEMI 175 (867)
Q Consensus 105 L~--~--pNe~IRglALr~Ls~I----~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~-~~ll 175 (867)
=. + .++.+|..|...||-+ ..+++++. +++.|.+.++.+|..|++|++.+|- -..+ +++ ..++
T Consensus 442 ~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~----L~~~L~dd~~~~~~~AalALGli~v--GTgn--~~ai~~LL 513 (963)
T 4ady_A 442 SGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEA----LKEVLYNDSATSGEAAALGMGLCML--GTGK--PEAIHDMF 513 (963)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----HHHHHHTCCHHHHHHHHHHHHHHHT--TCCC--HHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHhcCCHHHHHHHHHHHhhhhc--ccCC--HHHHHHHH
Confidence 10 0 0377776666688875 34555554 5566777888999999999999976 2211 122 2444
Q ss_pred HHHHccCCChhHHHHHHHHHHhc--chhhHHHHHHHHhhhcCccchHHHHHHHHHHH--HhhhcCchhHHHHHHHHHHHH
Q 002905 176 EKVLSTEQDPSAKRNAFLMLFTC--DQDRAINYLLTHVDRVSEWGELLQMVVLELIR--KVCRTNKGEKGKYIKIIISLL 251 (867)
Q Consensus 176 ~~lL~~D~D~~v~~~A~~~L~ei--~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~--~~~~~~p~~~~~li~~L~~lL 251 (867)
..+ ..+.+-.++|.|...|.-+ ....+.+-+...+.. ..+|+.+-...-.+. .....|+...+ +.|..+.
T Consensus 514 ~~~-~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq---~LL~~~~ 587 (963)
T 4ady_A 514 TYS-QETQHGNITRGLAVGLALINYGRQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVK---RLLHVAV 587 (963)
T ss_dssp HHH-HHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHH---HHHHHHH
T ss_pred HHH-hccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHH---HHHHHhc
Confidence 433 3666778999998888854 455567777777654 356776655444433 22334443222 2444444
Q ss_pred cCCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCh--hhHHHHHHhheecccCC
Q 002905 252 NAPSTAVIYECAGTLVSLS-SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR--DIMVDLIMDVLRALNSP 328 (867)
Q Consensus 252 ~s~s~aV~~eaa~tL~~Ls-~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p--~~l~~~~~~il~~L~d~ 328 (867)
...+..|+..|+..|..+. ..|+ ++..++++|..+.|+++|+-+--.|..+...+| .++. .+.+.++|+
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid----~L~~L~~D~ 659 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID----VLDPLTKDP 659 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH----HHHHHHTCS
T ss_pred cCCcHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH----HHHHHccCC
Confidence 5667789988888887653 2332 456677878888999999999999999876555 3333 234457899
Q ss_pred CHHHHHHHHHHHhccCCCC------cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc
Q 002905 329 NLDIRRKTLDIVLELITPR------NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI 387 (867)
Q Consensus 329 d~~IR~kaLelL~~Lv~~~------Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~ 387 (867)
|..||+-|+--+..+.-.. -+..++..|.+++.+ .+.|.+..|...+.+.|-.++-
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d---k~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN---KHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC---SSSCHHHHHHHHHHHHHHTTGG
T ss_pred CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHhcCC
Confidence 9999999998887766432 245555544443321 1112223455555555544443
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.13 E-value=5.8e-06 Score=77.85 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=84.6
Q ss_pred hHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHH
Q 002905 55 FITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIP 134 (867)
Q Consensus 55 ~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~ 134 (867)
...+++ ++.+++..+|..+...+..+ |. .. +..|.+-|+|+|+.+|..|++.|++++.++. ++
T Consensus 14 ~~~l~~-~L~~~~~~vR~~A~~~L~~~------~~---~~---~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~ 76 (131)
T 1te4_A 14 LVPRGS-HMADENKWVRRDVSTALSRM------GD---EA---FEPLLESLSNEDWRIRGAAAWIIGNFQDERA----VE 76 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSC------SS---TT---HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHh------Cc---hH---HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HH
Confidence 334444 56778888776664443322 21 11 3778888999999999999999999998765 45
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002905 135 SVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 135 ~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
.+.++|.|+++.||+.|+.++.++.. + +..+.+..+| .|.|+.|+..|..+|..|
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~~----~----~a~~~L~~~l-~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIGG----E----RVRAAMEKLA-ETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCS----H----HHHHHHHHHT-TSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHH-hCCCHHHHHHHHHHHHhC
Confidence 56677789999999999999998854 2 3445555655 799999999999988754
No 64
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.10 E-value=3.5e-05 Score=80.03 Aligned_cols=174 Identities=9% Similarity=0.051 Sum_probs=129.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHH----
Q 002905 246 IIISLLNAPSTAVIYECAGTLVSLSSA-----PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD---- 316 (867)
Q Consensus 246 ~L~~lL~s~s~aV~~eaa~tL~~Ls~~-----p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~---- 316 (867)
.+.+.+++.+..++++|+..|..+... ......+...+..++.++++.+|+..++..+..|...-...|.+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 366677888888888888877665211 11233455666666535889999999999999988643333333
Q ss_pred HHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC-c----
Q 002905 317 LIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP-E---- 391 (867)
Q Consensus 317 ~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~-~---- 391 (867)
.+..++.++.|++..||..+...+..++..-+++.+++.|...+. ++++..|..++..|+.+...+. .
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-------~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS-------NKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-------CSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-------CCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 455677788999999999999999999988889988887765432 3578999999999999877663 2
Q ss_pred -cHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhC
Q 002905 392 -VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN 426 (867)
Q Consensus 392 -~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~ 426 (867)
....+++.|+.++.+....++..+...+..+....
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 23578889999999998888888887777776543
No 65
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.10 E-value=0.00029 Score=87.81 Aligned_cols=399 Identities=12% Similarity=0.117 Sum_probs=200.4
Q ss_pred CCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHHHH
Q 002905 65 SEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPSVL 137 (867)
Q Consensus 65 S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~-------~~el~e~L~~~V~ 137 (867)
+.|...|+-+.-+++.+.+ + |+..-.|-.+.. .++++.+|-.|+..|-+.. .++-.+.+-..+.
T Consensus 18 ~~d~~~r~~A~~~L~~~~~-~------p~~w~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 88 (971)
T 2x1g_F 18 RSNSQNQAITHEWLTDAEA-S------PQAWQFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88 (971)
T ss_dssp TSTTTC----CHHHHHTTT-S------THHHHHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc-C------HHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHH
Confidence 4566677777777777632 1 344333333321 2568889988877776532 2223333344444
Q ss_pred HhcCC---CChHHHHHHHHHHHHhhccCCCcccccchHHHHHH---HHccC-----CChhHHHHHHHHHHhcchh-----
Q 002905 138 QNLQH---RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEK---VLSTE-----QDPSAKRNAFLMLFTCDQD----- 201 (867)
Q Consensus 138 ~~L~d---~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~---lL~~D-----~D~~v~~~A~~~L~ei~~~----- 201 (867)
+.+.+ ..++||.+.+.++..|.+. -+| .|++.+.. ++... .++.....++..|..+..+
T Consensus 89 ~~l~~~~~~~~~vr~kl~~~la~i~~~-~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 89 ESIVRFAGGPKIVLNRLCISLGAYIVH-MLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHH-TTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHH-ccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 44332 3689999999999999983 233 34433332 23221 1455666666666644432
Q ss_pred ---------hH----HHH----HHHHhhhcCccc----h-HHHHHHHHHHHHhhh--cCc-hhHHHHHHHHHHHHc----
Q 002905 202 ---------RA----INY----LLTHVDRVSEWG----E-LLQMVVLELIRKVCR--TNK-GEKGKYIKIIISLLN---- 252 (867)
Q Consensus 202 ---------~a----l~~----L~~~l~~i~~~~----p-~lQ~~iL~ll~~~~~--~~p-~~~~~li~~L~~lL~---- 252 (867)
.. .+. +...+.+....+ . -+...+++.+..+.. .-| .....+++.+.. |.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~ 242 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCY 242 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhc
Confidence 00 122 222232222110 1 246677787776554 112 123456665655 41
Q ss_pred ------------CCChHHHHHHHHHHHhcCC--C----hHHHHHHHHHHHHHH------ccCCCH---HHHHHHHHHHHH
Q 002905 253 ------------APSTAVIYECAGTLVSLSS--A----PTAIRAAANTYSQLL------LSQSDN---NVKLIVLDRLNE 305 (867)
Q Consensus 253 ------------s~s~aV~~eaa~tL~~Ls~--~----p~~lk~aa~~li~ll------~~~sD~---Nvk~ivL~~L~~ 305 (867)
..++.++-.|+.++..+-. . ...+..+...++++. ....|. .......+.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~ 322 (971)
T 2x1g_F 243 WPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVS 322 (971)
T ss_dssp SSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHH
T ss_pred cccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 1345566677777766532 1 123444443333321 134453 666666666776
Q ss_pred HHhhChhhHH---------------HHHHhheeccc-----CCCHHHHHHHHHHHhccCC----------CCcH----HH
Q 002905 306 LRSSHRDIMV---------------DLIMDVLRALN-----SPNLDIRRKTLDIVLELIT----------PRNI----NE 351 (867)
Q Consensus 306 L~~~~p~~l~---------------~~~~~il~~L~-----d~d~~IR~kaLelL~~Lv~----------~~Nv----~~ 351 (867)
+...++..+. .++..++.+.. ..+..|+..+++....++. .... ..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~ 402 (971)
T 2x1g_F 323 SVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKP 402 (971)
T ss_dssp HHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 7665555443 33334444432 2467899999998766543 1111 22
Q ss_pred HHHHHHHHHHHhh---cCC-c-cCC-------HHHHHHHHHHHHHhHccCC-ccHHHHHHHHHHHHcC-----CCcccHH
Q 002905 352 VVLMLKKEVVKTQ---SGE-L-EKN-------GEYRQMLIQAIHSCAIKFP-EVASTVVHLLMDFLGD-----SNVASAI 413 (867)
Q Consensus 352 IV~~L~kel~~~~---~~~-~-d~d-------~e~r~~lI~aI~~la~kf~-~~a~~~v~~Ll~lL~~-----~~~~v~~ 413 (867)
++..|...+.... +.+ . +.+ .++|+.+...+..++..++ .....+++.+-..+.. .+-...+
T Consensus 403 ~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~e 482 (971)
T 2x1g_F 403 LYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLE 482 (971)
T ss_dssp HHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 3333332222211 110 0 001 2588888889988888777 2233444444444432 1212344
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHhcccc----hHhHHHHHhhHhhccCCCCC----cHHHHHHHHHHhh
Q 002905 414 DVIIFVREIIEMNPKLRVSIITRLLDNFYQIR----AARVCTCALWIIGEYCQSLS----EVENGIATIKQCL 478 (867)
Q Consensus 414 evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~----~~~v~~~alWiLGEY~~~~~----~i~~~~~~i~~~l 478 (867)
.++..+..+.+.-++-....+..++..+..+. .+.++..++|++|.|++... -...++..|...+
T Consensus 483 aal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 483 ACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL 555 (971)
T ss_dssp HHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 45566776665433222234555555553333 67899999999999987654 2344555555555
No 66
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.09 E-value=0.0001 Score=81.79 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHHhhhcCchhHHH------HHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hH---HHH--HHHHHHH
Q 002905 218 GELLQMVVLELIRKVCRTNKGEKGK------YIKIIISLLNAPSTAVIYECAGTLVSLSSA--PT---AIR--AAANTYS 284 (867)
Q Consensus 218 ~p~lQ~~iL~ll~~~~~~~p~~~~~------li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~---~lk--~aa~~li 284 (867)
++-+|......|+.++..++..+.. .++.|..+|.+.++.|+..|+.+|.+++.. +. .+. .++..++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 4567888899999998776544333 488999999999999999999999998752 32 222 2467889
Q ss_pred HHHccCCCHHHHHHHHHHHHHHHhhCh----hhH--HHHHHhheecccCCCH----HHHHHHHHHHhccC
Q 002905 285 QLLLSQSDNNVKLIVLDRLNELRSSHR----DIM--VDLIMDVLRALNSPNL----DIRRKTLDIVLELI 344 (867)
Q Consensus 285 ~ll~~~sD~Nvk~ivL~~L~~L~~~~p----~~l--~~~~~~il~~L~d~d~----~IR~kaLelL~~Lv 344 (867)
++|.++++..++..++..|..|....+ .+. ..-+..++..|.+++. .++..+.-+|..|+
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs 246 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH
Confidence 987777888999988888888875222 222 1234445556655443 47777777776654
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.04 E-value=0.00047 Score=68.28 Aligned_cols=199 Identities=12% Similarity=0.202 Sum_probs=147.6
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhh--H----HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 002905 177 KVLSTEQDPSAKRNAFLMLFTCDQDR--A----INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISL 250 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~--a----l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~l 250 (867)
.+| +|.-..|+.||+..+..+..+. . +..|...++. ++.=|. ...|-+.++.+++.+|+.....++.++.-
T Consensus 39 ~~L-DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k-sEaIpl-tqeIa~a~G~la~i~Pe~v~~vVp~lfan 115 (253)
T 2db0_A 39 ELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-SEAIPL-TQEIAKAFGQMAKEKPELVKSMIPVLFAN 115 (253)
T ss_dssp HHT-TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-CCSHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHh-ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-cccCch-HHHHHHHHhHHHHhCHHHHHhhHHHHHHH
Confidence 434 6666789999999999886542 2 3334333332 223344 45677888888888998888888888887
Q ss_pred HcCCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCC
Q 002905 251 LNAPSTAVIYECAGTLVSLS-SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPN 329 (867)
Q Consensus 251 L~s~s~aV~~eaa~tL~~Ls-~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d 329 (867)
+.-..+-+...-+.+|-.+. .+|+.+..++.-+..++ +++|..=|..+|.-+..|...++..+.|+...++..|+|.|
T Consensus 116 yrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~sml-tskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~d 194 (253)
T 2db0_A 116 YRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSML-SSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGD 194 (253)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSS
T ss_pred HhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcc
Confidence 77777777777777777664 46888888888877665 68888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCc-HHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhH
Q 002905 330 LDIRRKTLDIVLELITPRN-INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 330 ~~IR~kaLelL~~Lv~~~N-v~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la 386 (867)
.-||.-+.+.|..+++.+- +..++..-..|+. |.+..+......+++.++
T Consensus 195 eiVRaSaVEtL~~lA~~npklRkii~~kl~e~~-------D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 195 EIVRASAVEALVHLATLNDKLRKVVIKRLEELN-------DTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCC-------CSCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHH
Confidence 9999999999998875332 4444443333321 445667777777777765
No 68
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00066 Score=81.60 Aligned_cols=308 Identities=13% Similarity=0.143 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc----c--hHHHHHHH
Q 002905 110 EYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV----D--APEMIEKV 178 (867)
Q Consensus 110 e~IRglALr~Ls~I~~-----~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~----d--~~~ll~~l 178 (867)
+.+|..|+-.|+|++. ..-+..+.+.+++.|.+...-.|+.|+-++.-+-. +|+.-+ + +.+.+-++
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl---~~~VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL---KASVKIMIRSNESFTEILLTM 384 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT---SSHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC---CHHHHHHHHhCHHHHHHHHHH
Confidence 5778888888888762 23345577778888877655558888888875533 343222 1 12333344
Q ss_pred HccCCChhHHHHHHHHHHhcchhh--------HHHHHH----------------------------HH----------hh
Q 002905 179 LSTEQDPSAKRNAFLMLFTCDQDR--------AINYLL----------------------------TH----------VD 212 (867)
Q Consensus 179 L~~D~D~~v~~~A~~~L~ei~~~~--------al~~L~----------------------------~~----------l~ 212 (867)
|....|..+...++..|.++.... .+.+|. .. ..
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~ 464 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR 464 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence 432367788888888888764210 000000 00 01
Q ss_pred hcCccchHHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHHcCCChH---HHHHHHHHHHhc--CCChHHH------
Q 002905 213 RVSEWGELLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLLNAPSTA---VIYECAGTLVSL--SSAPTAI------ 276 (867)
Q Consensus 213 ~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~l-----i~~L~~lL~s~s~a---V~~eaa~tL~~L--s~~p~~l------ 276 (867)
.+...++-.|..+++.|..++. +++.+..+ ++.|.++|.+.+.. +...|+.+|.++ +.+|..+
T Consensus 465 Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 465 EMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred HHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 1234566778888888888864 46655444 57888888877544 788999999876 4455432
Q ss_pred HHHHHHHHHHHccCCC------------HHH-HHHHHHHHHHHHhhC--------hhhHH--HHHHhheecccCCCHHHH
Q 002905 277 RAAANTYSQLLLSQSD------------NNV-KLIVLDRLNELRSSH--------RDIMV--DLIMDVLRALNSPNLDIR 333 (867)
Q Consensus 277 k~aa~~li~ll~~~sD------------~Nv-k~ivL~~L~~L~~~~--------p~~l~--~~~~~il~~L~d~d~~IR 333 (867)
..++.+|+++|...++ +.+ +|-+|..|..|+... ..++. ..+..+..++.+++..||
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 2577889988752111 112 888999998888643 12444 256777888888899999
Q ss_pred HHHHHHHhccCCCCc-H-HHHHH----H-H--HHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHH------HHH
Q 002905 334 RKTLDIVLELITPRN-I-NEVVL----M-L--KKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAST------VVH 398 (867)
Q Consensus 334 ~kaLelL~~Lv~~~N-v-~~IV~----~-L--~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~------~v~ 398 (867)
+.|.+++.+|+...- + ..+.+ . . .+-|....+ ..|.+.|+.+.-++..++.-+|.++.+ .++
T Consensus 624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~---s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~ 700 (778)
T 3opb_A 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ---LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIE 700 (778)
T ss_dssp HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHH
Confidence 999999999886432 2 12210 0 0 112223333 357899999999999987667665433 344
Q ss_pred HHHHHHcC--CCcccHHHHHHHHHHHHH
Q 002905 399 LLMDFLGD--SNVASAIDVIIFVREIIE 424 (867)
Q Consensus 399 ~Ll~lL~~--~~~~v~~evi~~l~~ii~ 424 (867)
.+++++.+ .++.+..-++.++..+.+
T Consensus 701 ~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 701 NAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 55666655 444555555555555554
No 69
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.00 E-value=0.0012 Score=82.41 Aligned_cols=362 Identities=12% Similarity=0.210 Sum_probs=183.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCC--CCchhHHHHHhhcC------CCCcchHHHHHHHHHHHhhcC--CC-C
Q 002905 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGET--LPQLFITIVRYVLP------SEDHTIQKLLLLYLEIIDKTD--AK-G 88 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~G~d--~s~l~~~VIk~v~~------S~d~~lKkL~Ylyl~~~~~~d--~d-g 88 (867)
+.+|+.++..+....+.+...++........ +-..++..+...+. +.+-..|..+++.+..++..- .+ |
T Consensus 363 e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~ 442 (960)
T 1wa5_C 363 EYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG 442 (960)
T ss_dssp HHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB
T ss_pred HHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC
Confidence 3477777654444444454455544443332 22222333322333 566678888888888875321 11 1
Q ss_pred CCCc-----hH-HHHHHHHHHhcCCC---CHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002905 89 RVLP-----EM-ILICQNLRNNLQHP---NEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQHRHPYIRRNAILAVM 156 (867)
Q Consensus 89 ~l~~-----Em-iLv~NsL~KDL~~p---Ne~IRglALr~Ls~I~~---~el~e~L~~~V~~~L~d~~pyVRK~A~lal~ 156 (867)
..+ ++ -+..+.+..+|++| +|++|+.|+.+++++.+ ++.++++++.+.++|.|+++-||-.|+.|+.
T Consensus 443 -~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~ 521 (960)
T 1wa5_C 443 -VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIE 521 (960)
T ss_dssp -CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 111 34 23456677788888 99999999999999864 5789999999999999999999999999999
Q ss_pred HhhccCCC-----------cccccchHHHHHHHHc--cCC--------ChhHHHHHHHHHHhcchhhH-------HHHHH
Q 002905 157 AIYKLPQG-----------EQLLVDAPEMIEKVLS--TEQ--------DPSAKRNAFLMLFTCDQDRA-------INYLL 208 (867)
Q Consensus 157 kI~~l~~~-----------p~li~d~~~ll~~lL~--~D~--------D~~v~~~A~~~L~ei~~~~a-------l~~L~ 208 (867)
++... .+ ..+.|-+++++..++. ... +......|+..+.+..++.. ++.|.
T Consensus 522 ~~~~~-~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~ 600 (960)
T 1wa5_C 522 KILTI-RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI 600 (960)
T ss_dssp HHTTC-BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHH
T ss_pred HHHhc-ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 98762 11 2244556666665431 222 22223334433333222222 23333
Q ss_pred HHhhhc--CccchHHHHHHHHHHHHhhhc-Cchh----HHHHHHHHHHHHcCCChH---HHHHHHHHHHhcC-CChHHHH
Q 002905 209 THVDRV--SEWGELLQMVVLELIRKVCRT-NKGE----KGKYIKIIISLLNAPSTA---VIYECAGTLVSLS-SAPTAIR 277 (867)
Q Consensus 209 ~~l~~i--~~~~p~lQ~~iL~ll~~~~~~-~p~~----~~~li~~L~~lL~s~s~a---V~~eaa~tL~~Ls-~~p~~lk 277 (867)
..+... +..++-+...+++.+..+++. .|+. ...++..+..+|+..... =.++....++... +-++.+.
T Consensus 601 ~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 680 (960)
T 1wa5_C 601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK 680 (960)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHH
Confidence 444332 223455566778888877765 4433 344556666666654332 1344444444332 1112222
Q ss_pred HHHHHHH--HHHccCCCHHHHHHHHHHHHHHHhhChhh-H--HHHHHhheecccCCCHHHHHHHHHHHhccCC--CCc-H
Q 002905 278 AAANTYS--QLLLSQSDNNVKLIVLDRLNELRSSHRDI-M--VDLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRN-I 349 (867)
Q Consensus 278 ~aa~~li--~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~-l--~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~--~~N-v 349 (867)
.+...+. ..+ ... .++- ...+.|..+....+.. + +.....+-+++.+.. .+.-+..++..++. +.. +
T Consensus 681 ~~~~~l~~~~~~-~~~-~~~~-~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~ 755 (960)
T 1wa5_C 681 PLAQPLLAPNVW-ELK-GNIP-AVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRL 755 (960)
T ss_dssp GGHHHHTSGGGG-CCT-TTHH-HHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCHHHh-cCC-CCch-hHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHH
Confidence 2333332 222 222 2333 2333444443333321 1 111111223344433 23555665544331 223 3
Q ss_pred HHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC
Q 002905 350 NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP 390 (867)
Q Consensus 350 ~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~ 390 (867)
...++.+..-+...... ++..++++..+..++.++..|.
T Consensus 756 ~~yl~~i~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~ 794 (960)
T 1wa5_C 756 RPYIKQIAVLLLQRLQN--SKTERYVKKLTVFFGLISNKLG 794 (960)
T ss_dssp GGGHHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcC
Confidence 33333333333222211 3456788888888888776654
No 70
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.00 E-value=0.00019 Score=79.60 Aligned_cols=236 Identities=15% Similarity=0.085 Sum_probs=158.4
Q ss_pred cCCCCHHHHHHHHHHhhcCCc-hhhHHH-----HHHHHHHhcC-----------CCChHHHHHHHHHHHHhhccCCCc--
Q 002905 105 LQHPNEYIRGVTLRFLCRLNE-TEIIEP-----LIPSVLQNLQ-----------HRHPYIRRNAILAVMAIYKLPQGE-- 165 (867)
Q Consensus 105 L~~pNe~IRglALr~Ls~I~~-~el~e~-----L~~~V~~~L~-----------d~~pyVRK~A~lal~kI~~l~~~p-- 165 (867)
.-.|++...+.|+++|+++.. ++.-.. .++.+.+.|. +.++-+|++|+.++..+.. ..+
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~--~~~~~ 118 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVAN 118 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTS--SCHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHc--CCHHH
Confidence 445666778889999998853 222111 3455555552 2468899999999999987 443
Q ss_pred -ccc---cchHHHHHHHHccCCChhHHHHHHHHHHhcchh---h---------HHHHHHHHhhhcCccchHHHHHHHHHH
Q 002905 166 -QLL---VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---R---------AINYLLTHVDRVSEWGELLQMVVLELI 229 (867)
Q Consensus 166 -~li---~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~---~---------al~~L~~~l~~i~~~~p~lQ~~iL~ll 229 (867)
..+ ..+.+.+-.+| ...|+.++.+|..+|..+... . +++.|..++.. ..++-.+..++..+
T Consensus 119 k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~--~~~~~~~~~A~~aL 195 (354)
T 3nmw_A 119 KATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKESTLKSVLSAL 195 (354)
T ss_dssp HHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 122 12233343555 788999999999999877531 1 35566665432 23455677778888
Q ss_pred HHhhhcCchhHH------HHHHHHHHHHcCCCh----HHHHHHHHHHHhcCC----ChHHHHH-----HHHHHHHHHccC
Q 002905 230 RKVCRTNKGEKG------KYIKIIISLLNAPST----AVIYECAGTLVSLSS----APTAIRA-----AANTYSQLLLSQ 290 (867)
Q Consensus 230 ~~~~~~~p~~~~------~li~~L~~lL~s~s~----aV~~eaa~tL~~Ls~----~p~~lk~-----aa~~li~ll~~~ 290 (867)
..++..++..+. ..++.|..+|.+.++ .|+.+|+.+|.+++. .++..+. +...++++| .+
T Consensus 196 ~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL-~~ 274 (354)
T 3nmw_A 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KS 274 (354)
T ss_dssp HHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHT-TC
T ss_pred HHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHH-cC
Confidence 887764443333 356788889987654 589999999998874 5543332 456777776 56
Q ss_pred CCHHHHHHHHHHHHHHHhhChhh---HH--HHHHhheecccCCCHHHHHHHHHHHhccCCC
Q 002905 291 SDNNVKLIVLDRLNELRSSHRDI---MV--DLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 291 sD~Nvk~ivL~~L~~L~~~~p~~---l~--~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~ 346 (867)
++..++--+...|..+...+++- +. .-+..++.+|.+.+..+|+.|...|..|+..
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 78889999999999998544432 22 1255567788889999999999999877653
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.95 E-value=0.0011 Score=75.77 Aligned_cols=228 Identities=15% Similarity=0.076 Sum_probs=155.1
Q ss_pred HHHHHHHhhcCCchhhHHH------HHHHHHHhcC-----------CCChHHHHHHHHHHHHhhccCCCcc---cc---c
Q 002905 113 RGVTLRFLCRLNETEIIEP------LIPSVLQNLQ-----------HRHPYIRRNAILAVMAIYKLPQGEQ---LL---V 169 (867)
Q Consensus 113 RglALr~Ls~I~~~el~e~------L~~~V~~~L~-----------d~~pyVRK~A~lal~kI~~l~~~p~---li---~ 169 (867)
.+.|+.+|+++...+-... .++.+.+.|. +.++-++++|+.++..+.. ..+. .+ .
T Consensus 165 ~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~--~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC--CCcccHHHHHHcC
Confidence 3589999998874332222 3555666662 2467899999999999987 4432 22 1
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcchh---h---------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCc
Q 002905 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---R---------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK 237 (867)
Q Consensus 170 d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~---~---------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p 237 (867)
.+.+.+-.+| ...|+.++.+|..+|..+... . +++.|..++.. ..++-.+..++..+..++..++
T Consensus 243 GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~--s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 243 GCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--CCSHHHHHHHHHHHHHHHHHCH
T ss_pred CcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--CCCHHHHHHHHHHHHHHccCCH
Confidence 2233344555 788999999999999887531 1 24556665432 3356667788888888776443
Q ss_pred hhHH------HHHHHHHHHHcCCCh----HHHHHHHHHHHhcCC----ChHHHHH-----HHHHHHHHHccCCCHHHHHH
Q 002905 238 GEKG------KYIKIIISLLNAPST----AVIYECAGTLVSLSS----APTAIRA-----AANTYSQLLLSQSDNNVKLI 298 (867)
Q Consensus 238 ~~~~------~li~~L~~lL~s~s~----aV~~eaa~tL~~Ls~----~p~~lk~-----aa~~li~ll~~~sD~Nvk~i 298 (867)
..+. -.+..|..+|.+.+. .|+.+|+.+|.+++. .+...+. +...++.+| .+.+..++--
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~ 398 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSN 398 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS-SCSCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH-cCCChHHHHH
Confidence 3333 346788889987654 489999999988873 5543332 346677776 5678889999
Q ss_pred HHHHHHHHHhhChhh---HH--HHHHhheecccCCCHHHHHHHHHHHhccCCC
Q 002905 299 VLDRLNELRSSHRDI---MV--DLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 299 vL~~L~~L~~~~p~~---l~--~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~ 346 (867)
+...|..+...+++. +. .-+.-++.+|.+.+..+|+.|...|.+|+..
T Consensus 399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999998544442 21 2355567788889999999999999988764
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.02 Score=68.99 Aligned_cols=431 Identities=13% Similarity=0.155 Sum_probs=253.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCC--CCCchhHHHHHhh-cCCCCcchHHHHHHHHHHHhhcC--------
Q 002905 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGE--TLPQLFITIVRYV-LPSEDHTIQKLLLLYLEIIDKTD-------- 85 (867)
Q Consensus 17 ~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~--d~s~l~~~VIk~v-~~S~d~~lKkL~Ylyl~~~~~~d-------- 85 (867)
+=+.+||+.+..+.+. ....+-.+++.+...+ ..+.+-+ .++++ +-++..++|.++.+.+..+.+..
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 209 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKEVRF-LVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAV 209 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTTTTH-HHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccchhh-HHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHH
Confidence 3457888888855544 7788888988777654 4444222 34444 34666778877766544432211
Q ss_pred ------------CC-CCCCchHHHHHH------------------------HHHHhc-CCCCHHHHHHHHHHhhcCCchh
Q 002905 86 ------------AK-GRVLPEMILICQ------------------------NLRNNL-QHPNEYIRGVTLRFLCRLNETE 127 (867)
Q Consensus 86 ------------~d-g~l~~EmiLv~N------------------------sL~KDL-~~pNe~IRglALr~Ls~I~~~e 127 (867)
++ |. ++++.+.+ .++.-+ ..+++.+.-..|+.|+.....+
T Consensus 210 ~~~~~~l~~e~~~~~~~--~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 210 VDFMSSLIVEAEIDVGN--DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHhhccCCCC--ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 11 11 22322222 222233 3355666667788877766443
Q ss_pred h-----HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc---cccchHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002905 128 I-----IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ---LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 128 l-----~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~---li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
- .+..++.+.+.+.. ..+|..|+.++.|+.. .... -+.+..+.+.++|. ..+...+..|+..|..+.
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~--~~~~~~~si~~La~~~~~~L~-~~~~~~~~~AvEgLaYLS 362 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWS--FTKLTCINLKQLSEIFINAIS-RRIVPKVEMSVEALAYLS 362 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTG--GGTCTTCCHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhc--CCCCCcCcHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHh
Confidence 3 44466777777754 6899999999999987 3321 12234566667664 445455888888888764
Q ss_pred hhh-----------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcC---------------------ch---------
Q 002905 200 QDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN---------------------KG--------- 238 (867)
Q Consensus 200 ~~~-----------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~---------------------p~--------- 238 (867)
-+. +++.|..+++. ..+.-++-.++.+|..++... |.
T Consensus 363 l~~~VKe~L~~d~~~L~~Lv~llk~--~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~ 440 (778)
T 3opb_A 363 LKASVKIMIRSNESFTEILLTMIKS--QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKA 440 (778)
T ss_dssp TSSHHHHHHHHCHHHHHHHHHHHTT--TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHH
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCccccccc
Confidence 321 23444444442 112223444555554443311 10
Q ss_pred ------h-H------HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH----HH-HHHHHHHHHHccCCCHH--HHHH
Q 002905 239 ------E-K------GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA----IR-AAANTYSQLLLSQSDNN--VKLI 298 (867)
Q Consensus 239 ------~-~------~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~----lk-~aa~~li~ll~~~sD~N--vk~i 298 (867)
+ . ...+..|..++.+.++.++-.|+++|.+++.+++. ++ .+...++.++.+.++.. .|..
T Consensus 441 ~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 441 AKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred chHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 0 0 12457788889999999999999999999876542 23 25578888886655442 8999
Q ss_pred HHHHHHHHHh-hChhhH-H-----HHHHhheecccC-CCHH------------H-HHHHHHHHhccCCCC-c----H-HH
Q 002905 299 VLDRLNELRS-SHRDIM-V-----DLIMDVLRALNS-PNLD------------I-RRKTLDIVLELITPR-N----I-NE 351 (867)
Q Consensus 299 vL~~L~~L~~-~~p~~l-~-----~~~~~il~~L~d-~d~~------------I-R~kaLelL~~Lv~~~-N----v-~~ 351 (867)
+...|.+|.. .+|..+ . .-+.-++..|.. +... + +..||-.|.+|++.. | + ..
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 9999999873 355432 1 222334445552 2211 2 678999999988764 2 2 33
Q ss_pred HHHH--HHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc-------cCCcc----HHHHHHHHHHHHcCCCcccHHHHHHH
Q 002905 352 VVLM--LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI-------KFPEV----ASTVVHLLMDFLGDSNVASAIDVIIF 418 (867)
Q Consensus 352 IV~~--L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~-------kf~~~----a~~~v~~Ll~lL~~~~~~v~~evi~~ 418 (867)
|+.+ -...+..... +.+..+|+.+...|+.++. +|-.. +..-++.|+.++...+..+...+..+
T Consensus 601 Ii~~~ga~~~L~~LL~---s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA 677 (778)
T 3opb_A 601 IVSTKVYWSTIENLML---DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI 677 (778)
T ss_dssp HHHSHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHh---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence 4442 2223333332 3467899999999998873 22111 11248899999988887888888888
Q ss_pred HHHHHHhCcccH------HHHHHHHHHHhccc-chHhHHH---HHhhHhhccC
Q 002905 419 VREIIEMNPKLR------VSIITRLLDNFYQI-RAARVCT---CALWIIGEYC 461 (867)
Q Consensus 419 l~~ii~~~p~lr------~~il~~L~~~L~~i-~~~~v~~---~alWiLGEY~ 461 (867)
+..+...+|... ...++.+++.+.+. ..++++. .+++-+.||+
T Consensus 678 LAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 678 FANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 887765566542 24566778877764 4455533 3344455554
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.89 E-value=0.0058 Score=76.20 Aligned_cols=329 Identities=13% Similarity=0.090 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHH--ccCCChhHHHHHHHHHHhcchhh--
Q 002905 127 EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVL--STEQDPSAKRNAFLMLFTCDQDR-- 202 (867)
Q Consensus 127 el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL--~~D~D~~v~~~A~~~L~ei~~~~-- 202 (867)
+--+.+-..+.+++.+..+.||+.++.++..|.+. -+|+ .||+++..++ ...+|+..+..|+.+|.++.++.
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~-d~p~---~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS-DFPD---RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-HSTT---TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-hCcc---chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666799999999999999883 2442 4555554432 25667888889999888876521
Q ss_pred ---------HHHH--------HHHHhhh----cCcc-ch------HH--HHHHHHHHHHhhhcC-chh----HHHHHHHH
Q 002905 203 ---------AINY--------LLTHVDR----VSEW-GE------LL--QMVVLELIRKVCRTN-KGE----KGKYIKII 247 (867)
Q Consensus 203 ---------al~~--------L~~~l~~----i~~~-~p------~l--Q~~iL~ll~~~~~~~-p~~----~~~li~~L 247 (867)
.+.. +..++.. +... ++ .+ ...++++++.+...+ |.. -..+++.+
T Consensus 157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~ 236 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF 236 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 0111 1122211 2211 11 11 123555555443221 221 23445555
Q ss_pred HHHHcCCCh---------------HHHHHHHHHHHhcC-CChHH----HHHHHHHHHHHHcc----CCCHHHHHHHHHHH
Q 002905 248 ISLLNAPST---------------AVIYECAGTLVSLS-SAPTA----IRAAANTYSQLLLS----QSDNNVKLIVLDRL 303 (867)
Q Consensus 248 ~~lL~s~s~---------------aV~~eaa~tL~~Ls-~~p~~----lk~aa~~li~ll~~----~sD~Nvk~ivL~~L 303 (867)
..+|....+ .|.-.+..++..+. ..+.. +......+++.+.+ ..+..++..+++-+
T Consensus 237 ~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl 316 (960)
T 1wa5_C 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316 (960)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHH
Confidence 666644211 24444444444432 12222 22333334444421 34567788888888
Q ss_pred HHHHhh--ChhhHH--HHHHhhe-----ec--cc---------------------CCCHHHHHHHHHHHhccCCCCcHHH
Q 002905 304 NELRSS--HRDIMV--DLIMDVL-----RA--LN---------------------SPNLDIRRKTLDIVLELITPRNINE 351 (867)
Q Consensus 304 ~~L~~~--~p~~l~--~~~~~il-----~~--L~---------------------d~d~~IR~kaLelL~~Lv~~~Nv~~ 351 (867)
..+... +...++ ++...++ .. ++ ++..++|+.+.+++..++.... +.
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~ 395 (960)
T 1wa5_C 317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VL 395 (960)
T ss_dssp HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HH
T ss_pred HHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hh
Confidence 777542 122332 3333333 11 11 1123678889999888887655 45
Q ss_pred HHHHHHHHH----HHhhcCCccCCHHHHHHHHHHHHHhHccC-------C------ccHHHHHHHHHHHHcCC---Cccc
Q 002905 352 VVLMLKKEV----VKTQSGELEKNGEYRQMLIQAIHSCAIKF-------P------EVASTVVHLLMDFLGDS---NVAS 411 (867)
Q Consensus 352 IV~~L~kel----~~~~~~~~d~d~e~r~~lI~aI~~la~kf-------~------~~a~~~v~~Ll~lL~~~---~~~v 411 (867)
++..+...+ ..+... ...+...|..++.++|.++.+. . ....+.+..++..|.+. .+.+
T Consensus 396 v~~~~l~~i~~~l~~~~~~-~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 396 VTNIFLAHMKGFVDQYMSD-PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred HHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 554444433 332211 0235678899999999998542 1 23345566677777776 6677
Q ss_pred HHHHHHHHHHHHHh-CcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCC
Q 002905 412 AIDVIIFVREIIEM-NPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQ 462 (867)
Q Consensus 412 ~~evi~~l~~ii~~-~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~ 462 (867)
+..++.++..+... .|+....++..++..|.+ .++.++..++|.+..+++
T Consensus 475 r~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLTKAQLIELMPILATFLQT-DEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHh
Confidence 77888887776554 344556677777777765 357789999999998766
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00075 Score=70.90 Aligned_cols=196 Identities=11% Similarity=0.153 Sum_probs=112.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH-hhccCCCccccc---c---hHHHHHHHHccCCChhHHHHHHHHHHhcchhhH---
Q 002905 134 PSVLQNLQHRHPYIRRNAILAVMA-IYKLPQGEQLLV---D---APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--- 203 (867)
Q Consensus 134 ~~V~~~L~d~~pyVRK~A~lal~k-I~~l~~~p~li~---d---~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a--- 203 (867)
+...+.+.+.+..-||.|+.++.. +.. ..|.+.+ + +.+.+.+.|..|.|+.|+..|+.+|..+.....
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~--~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLS--QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGG--GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHh--cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 345566788888888888888888 775 4555541 2 233444544468888888888888777653211
Q ss_pred -H-HH----HHHHhhhcCccchHHHHHHHHHHHHhhhc-Cch----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--
Q 002905 204 -I-NY----LLTHVDRVSEWGELLQMVVLELIRKVCRT-NKG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLS-- 270 (867)
Q Consensus 204 -l-~~----L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~-~p~----~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls-- 270 (867)
- +| +..++..+.+..+-.+..+-..+..++.. +|. .-..+++.|...|++.++.|+.++..+|..+.
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 1 23 23334444444444444444444333331 211 13456777777777777778877777776652
Q ss_pred -CC-hH----HH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhheecccCCCHHHHHHHHHHH
Q 002905 271 -SA-PT----AI-RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-HRDIMVDLIMDVLRALNSPNLDIRRKTLDIV 340 (867)
Q Consensus 271 -~~-p~----~l-k~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~-~p~~l~~~~~~il~~L~d~d~~IR~kaLelL 340 (867)
+. |. .+ +.++..+.+.+ .++++.||-.+.+.+..+... ..+.+.+|...+ + .+|+++++-.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L----d----~~k~~ki~~~ 245 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL----D----NLKRKKIEET 245 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS----C----HHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH----h----HHHHHHHHHH
Confidence 11 11 23 44555555544 667777777777777776653 333466665553 1 3666666543
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00099 Score=69.99 Aligned_cols=174 Identities=13% Similarity=0.205 Sum_probs=122.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHH-HHhCC--------CCCCchhHHHHHhhc-CCCCcchHHHHHHHHHHHhhcCCCCCC
Q 002905 21 EIKEALEGNDVPAKVDAMKKAIM-LLLNG--------ETLPQLFITIVRYVL-PSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (867)
Q Consensus 21 eIr~~L~s~~~~~K~~alkklI~-l~~~G--------~d~s~l~~~VIk~v~-~S~d~~lKkL~Ylyl~~~~~~d~dg~l 90 (867)
++.+.++|++-.+|++++..+.. +. .| .+...++-.+.+ .+ ..+|..++..+.-.+..+++.=....+
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~-~~~~~i~~~~~~~~~~~~~L~~-~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVL-SQTKKLKSTSQNYSNLLGIYGH-IIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTG-GGCCCBCCTTCCCHHHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHH-hcCCccccCcccHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 67788999999999999998877 44 33 122233333333 55 567777777777777666432110123
Q ss_pred C-chHHHHHHHHHHhcCCCCHHHHHH---HHHHhhcCCchh---h-HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccC
Q 002905 91 L-PEMILICQNLRNNLQHPNEYIRGV---TLRFLCRLNETE---I-IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLP 162 (867)
Q Consensus 91 ~-~EmiLv~NsL~KDL~~pNe~IRgl---ALr~Ls~I~~~e---l-~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~ 162 (867)
. +-...+...+..-+.++.+.||.. ||..++.-.+|. - ++.+++.+...|.|++|.||..|+.++.++..
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~-- 175 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK-- 175 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH--
Confidence 2 334556788888899999998766 444455433322 2 56889999999999999999999999999997
Q ss_pred CCcc-------cc-cchHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002905 163 QGEQ-------LL-VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 163 ~~p~-------li-~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
..+. .+ +.+.+.+.+++ .|+++.|+.+|+.+|..+.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 4442 34 66667777776 8999999999999888754
No 76
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.51 E-value=0.04 Score=68.94 Aligned_cols=391 Identities=12% Similarity=0.085 Sum_probs=192.3
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC---chh----hHHHHHHHH
Q 002905 64 PSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN---ETE----IIEPLIPSV 136 (867)
Q Consensus 64 ~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~---~~e----l~e~L~~~V 136 (867)
|+.|...|+-++-|++.+.+. | +....|-.+...-..+|+.+|-.|+..|-+.. .++ -.+.+-..+
T Consensus 18 p~sd~~~r~~A~~~L~~~q~s-p------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l 90 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLRSS-S------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV 90 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHS-T------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC-h------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence 455788888898888888443 3 34444444433222227888888877776421 122 223333333
Q ss_pred HHhcC-----CCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCCh-hHHHHHHHHHHhcchh---------
Q 002905 137 LQNLQ-----HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDP-SAKRNAFLMLFTCDQD--------- 201 (867)
Q Consensus 137 ~~~L~-----d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~-~v~~~A~~~L~ei~~~--------- 201 (867)
...+. ...+|||.+.+.++..+++. .+|+.-|++.+-+-.++ ..+++ .+.-..+..|..++.+
T Consensus 91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~-~~p~~Wp~~i~~l~~~~-~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~ 168 (980)
T 3ibv_A 91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQ-LYPSNWNDFFASLQGVI-AASSQSEFSNFYLKVLLSIGDEIADSLVLKT 168 (980)
T ss_dssp HHHHHHCCSTTSCTHHHHHHHHHHHHHHHH-HTTTTCTTHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHCCCCSCCC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-hCcccCchHHHHHHHHh-cCCChhHHHHHHHHHHHHhHHHHHhcccccC
Confidence 33332 35789999999999999883 34554444432222323 22223 3333444444422111
Q ss_pred -----hH---HHH------------HHHHhhhc-CccchHHHHHHHHHHHHhhhcCc-hh--HHHHHHHHHHHHcCCChH
Q 002905 202 -----RA---INY------------LLTHVDRV-SEWGELLQMVVLELIRKVCRTNK-GE--KGKYIKIIISLLNAPSTA 257 (867)
Q Consensus 202 -----~a---l~~------------L~~~l~~i-~~~~p~lQ~~iL~ll~~~~~~~p-~~--~~~li~~L~~lL~s~s~a 257 (867)
+. .+. +..++.+. ...++-+...+|+.+..+..--| .. ...+++.+..+|.. +.
T Consensus 169 ~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~ 246 (980)
T 3ibv_A 169 DVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EE 246 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HH
T ss_pred HHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hH
Confidence 10 001 11111111 11234445677777777765322 11 24677777777765 66
Q ss_pred HHHHHHHHHHhcC---CChHHHHHHHH--HHHHHH---cc-CCCHHHH-----HH--HHHHHHHHHhhCh----------
Q 002905 258 VIYECAGTLVSLS---SAPTAIRAAAN--TYSQLL---LS-QSDNNVK-----LI--VLDRLNELRSSHR---------- 311 (867)
Q Consensus 258 V~~eaa~tL~~Ls---~~p~~lk~aa~--~li~ll---~~-~sD~Nvk-----~i--vL~~L~~L~~~~p---------- 311 (867)
++-.|+.+|..+- ..|..-..... .+...+ .. +.|.++. .+ +-+.+..+ ...|
T Consensus 247 ~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~ 325 (980)
T 3ibv_A 247 LRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKEN 325 (980)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhh
Confidence 7777777776652 23322111111 111111 11 3555542 11 01122222 3344
Q ss_pred --hhHHHHHHhheecccCCCHHHHHHHHHHHhccCC------C-----CcHHHHHHHHHHHHHH---hh-cCCccC----
Q 002905 312 --DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT------P-----RNINEVVLMLKKEVVK---TQ-SGELEK---- 370 (867)
Q Consensus 312 --~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~------~-----~Nv~~IV~~L~kel~~---~~-~~~~d~---- 370 (867)
..+...+.-+++|..+++.+|...+++.+...+. . .-...++..|..-+.+ |. +.+++.
T Consensus 326 ~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ 405 (980)
T 3ibv_A 326 CSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDS 405 (980)
T ss_dssp HHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccch
Confidence 4566777778889999999999988887765542 1 1112333333333222 11 111111
Q ss_pred C-----HHHHHHHHHHHHHhHccCCccHHH-HHHHHHHHHcCC---CcccH---HHH-HHHHHHHHHhCcc---------
Q 002905 371 N-----GEYRQMLIQAIHSCAIKFPEVAST-VVHLLMDFLGDS---NVASA---IDV-IIFVREIIEMNPK--------- 428 (867)
Q Consensus 371 d-----~e~r~~lI~aI~~la~kf~~~a~~-~v~~Ll~lL~~~---~~~v~---~ev-i~~l~~ii~~~p~--------- 428 (867)
+ .+||+.+-..+..|+...|+..-. ..+.+...+... +.... .|+ +..+..+.+.-++
T Consensus 406 ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~ 485 (980)
T 3ibv_A 406 EEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 485 (980)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCccc
Confidence 1 368888883334455555544322 111443333221 11111 122 3333333322111
Q ss_pred -cHHHHHHHHHHHhc----ccchHhHHHHHhhHhhccCCCCCc
Q 002905 429 -LRVSIITRLLDNFY----QIRAARVCTCALWIIGEYCQSLSE 466 (867)
Q Consensus 429 -lr~~il~~L~~~L~----~i~~~~v~~~alWiLGEY~~~~~~ 466 (867)
.-+.++.-|...+. ....+.++..++|++|.|+.....
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~ 528 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY 528 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 11234444444332 235688999999999999998764
No 77
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.45 E-value=0.17 Score=62.53 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=169.1
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHH
Q 002905 64 PSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQ 138 (867)
Q Consensus 64 ~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~-----~el~e~L~~~V~~ 138 (867)
.+.+...|..+++++..+...-.+.. .+.+--+.+ +.-.+.++++.+|..|+.+++++.. ++.++++++.+.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~ 536 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-SDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLH 536 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-CSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-hHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 44566677777777777643322111 122222223 2235677899999999999998853 6788899999999
Q ss_pred hcCCCChHHHHHHHHHHHHhhccCCCc-ccccchHHHHHHH---Hcc-CCChhHHHHHHHHHHhcc----hhhHHHHHHH
Q 002905 139 NLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAPEMIEKV---LST-EQDPSAKRNAFLMLFTCD----QDRAINYLLT 209 (867)
Q Consensus 139 ~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~d~~~ll~~l---L~~-D~D~~v~~~A~~~L~ei~----~~~al~~L~~ 209 (867)
+|.+ |-||..|+.|+.++.+ ..+ .+.|-+++++..+ +.. +-+...+..++.++..+. ++...+|+..
T Consensus 537 ~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~ 612 (963)
T 2x19_B 537 ALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHS 612 (963)
T ss_dssp HTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9965 8999999999999987 443 4556666665543 322 234566655555555432 2333445444
Q ss_pred HhhhcCccchHHHHHHHHHHHHhhhcCchhHH---HHHHHHHHHHcCCC---h-HHHHHH--HHHHHhcCCCh--HHHHH
Q 002905 210 HVDRVSEWGELLQMVVLELIRKVCRTNKGEKG---KYIKIIISLLNAPS---T-AVIYEC--AGTLVSLSSAP--TAIRA 278 (867)
Q Consensus 210 ~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~---~li~~L~~lL~s~s---~-aV~~ea--a~tL~~Ls~~p--~~lk~ 278 (867)
++.-+. .-|-++ .. ...+++.+. .+++.+..+.+.-+ + .+--+. +..--.-...| ...+.
T Consensus 613 l~~~l~--~~l~~~------~~-~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 613 LISPYI--QQLEKL------AE-EIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHH--HHHHHH------HS-SCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH
T ss_pred HHHHHH--HHHHHH------Hh-CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH
Confidence 432110 011110 00 001222222 12222222211100 0 000000 00000000011 01122
Q ss_pred HHHHHHHHHcc-CCCHHHHHHHHHHHHHHHhhChhh----HHHHHHhheecccC-CCHHHHHHHHHHHhccC----CCC-
Q 002905 279 AANTYSQLLLS-QSDNNVKLIVLDRLNELRSSHRDI----MVDLIMDVLRALNS-PNLDIRRKTLDIVLELI----TPR- 347 (867)
Q Consensus 279 aa~~li~ll~~-~sD~Nvk~ivL~~L~~L~~~~p~~----l~~~~~~il~~L~d-~d~~IR~kaLelL~~Lv----~~~- 347 (867)
+...+..++-. ..++.+.-.+...+..+....+.- +.+....++..+.. +... .+.++..++ ...
T Consensus 684 ~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~ 759 (963)
T 2x19_B 684 VFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEPA 759 (963)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCCcc
Confidence 22222222211 234455555555555554432222 22222222222221 2222 233333332 222
Q ss_pred ---cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc-------HHHHHHHHHHHHcCCCcccHHHHHH
Q 002905 348 ---NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV-------ASTVVHLLMDFLGDSNVASAIDVII 417 (867)
Q Consensus 348 ---Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~-------a~~~v~~Ll~lL~~~~~~v~~evi~ 417 (867)
.+..+++.+...+......+.+..+++++.....++.+...+|.. ...+++.++..+......+...+..
T Consensus 760 ~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~ 839 (963)
T 2x19_B 760 HFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCG 839 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 233344433333211111111346899999999999988776543 5678888888888777777788889
Q ss_pred HHHHHHHhC
Q 002905 418 FVREIIEMN 426 (867)
Q Consensus 418 ~l~~ii~~~ 426 (867)
++.+++...
T Consensus 840 ~l~~l~~~~ 848 (963)
T 2x19_B 840 FFTELLPRC 848 (963)
T ss_dssp HHHHHGGGT
T ss_pred HHHHHHhcC
Confidence 999998754
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.40 E-value=0.0013 Score=71.04 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=95.9
Q ss_pred HHHHHH-hcCCCChHHHHHHHHHHHHhhccCCCccccc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHH
Q 002905 133 IPSVLQ-NLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINY 206 (867)
Q Consensus 133 ~~~V~~-~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~ 206 (867)
+|.+.+ +|.++++.||..|+.|++.+.. .+|..-. .+.+.+-.+|..+.++.++++|+.+|..+.....
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~--~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~--- 157 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE--- 157 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc---
Confidence 455666 9999999999999999999988 6664321 2333344555446678888888888876643311
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHH-----HHH
Q 002905 207 LLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIR-----AAA 280 (867)
Q Consensus 207 L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk-----~aa 280 (867)
+ .+..+++ ...++.|..+|++.++.|+.+|+.+|.++.. +++..+ .+.
T Consensus 158 ------------~-~~~~~~~-------------~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 158 ------------A-GLLQFLR-------------LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp ------------H-HHHHHHH-------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred ------------H-HHHHHHH-------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 0 0111111 0234566667777777888888888877642 222211 245
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH
Q 002905 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM 314 (867)
Q Consensus 281 ~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l 314 (867)
..++.+| .++|+.++-.++..|..|....+...
T Consensus 212 ~~Lv~LL-~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 212 QQLVALV-RTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHHHH-TSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHH-cCCChhHHHHHHHHHHHHHhCChhHH
Confidence 6677766 56688888888888888876655443
No 79
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.29 E-value=0.0038 Score=67.30 Aligned_cols=136 Identities=8% Similarity=0.066 Sum_probs=102.9
Q ss_pred hee-cccCCCHHHHHHHHHHHhccCCCC--cHHH-----HHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc
Q 002905 321 VLR-ALNSPNLDIRRKTLDIVLELITPR--NINE-----VVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV 392 (867)
Q Consensus 321 il~-~L~d~d~~IR~kaLelL~~Lv~~~--Nv~~-----IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~ 392 (867)
++. +|.++++.||..|+.++..++... +-.. .++.|.+-|.. +.+..+|+.++.+|+.++..+++.
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~------~~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR------DACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc------CCCHHHHHHHHHHHHHHHcCCcHH
Confidence 455 888999999999999999887532 2222 34455533332 235789999999999999877653
Q ss_pred HH-----HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHhcccchHhHHHHHhhHhhccCC
Q 002905 393 AS-----TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVS-----IITRLLDNFYQIRAARVCTCALWIIGEYCQ 462 (867)
Q Consensus 393 a~-----~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~-----il~~L~~~L~~i~~~~v~~~alWiLGEY~~ 462 (867)
.. ..++.|+.+|.+....+..+++..|..+....|+.+.. ++..|+..|.. .+++++..++|.+|....
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~-~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT-EHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC-CChhHHHHHHHHHHHHHh
Confidence 32 46779999999988889999999999999888877554 57788888865 467899999999987655
Q ss_pred C
Q 002905 463 S 463 (867)
Q Consensus 463 ~ 463 (867)
.
T Consensus 239 ~ 239 (296)
T 1xqr_A 239 D 239 (296)
T ss_dssp T
T ss_pred C
Confidence 4
No 80
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.19 E-value=0.078 Score=66.68 Aligned_cols=149 Identities=9% Similarity=0.113 Sum_probs=75.3
Q ss_pred HHHhheecccCCCHHHHHHHHHHHhccCC--------CCcHHHHHHHHHHHHHHhh---cC-C------------ccCCH
Q 002905 317 LIMDVLRALNSPNLDIRRKTLDIVLELIT--------PRNINEVVLMLKKEVVKTQ---SG-E------------LEKNG 372 (867)
Q Consensus 317 ~~~~il~~L~d~d~~IR~kaLelL~~Lv~--------~~Nv~~IV~~L~kel~~~~---~~-~------------~d~d~ 372 (867)
.+..++.+...+|..|+..+++....++. ..-...++..|...+.... +. + +.++.
T Consensus 345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~ 424 (1049)
T 3m1i_C 345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKES 424 (1049)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccc
Confidence 34445555567789999999998887765 1223344444444333211 10 0 00111
Q ss_pred ---HHHHHHHHHHHHhHccCCc-cHHHHHHHHHHHHcCCC-c-ccHHHHHHHHHHHHHhCccc-HHHHHHHHHHHhcc--
Q 002905 373 ---EYRQMLIQAIHSCAIKFPE-VASTVVHLLMDFLGDSN-V-ASAIDVIIFVREIIEMNPKL-RVSIITRLLDNFYQ-- 443 (867)
Q Consensus 373 ---e~r~~lI~aI~~la~kf~~-~a~~~v~~Ll~lL~~~~-~-~v~~evi~~l~~ii~~~p~l-r~~il~~L~~~L~~-- 443 (867)
.+++.+-..+..++..++. +...+.+.+-+.+.... + ...+.++..+..+.+....- ....+..++..+..
T Consensus 425 d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 425 DTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 3455666677777766653 22444455555554221 1 23344456666654432221 11223444443322
Q ss_pred -c---chHh-HHH-HHhhHhhccCCCCC
Q 002905 444 -I---RAAR-VCT-CALWIIGEYCQSLS 465 (867)
Q Consensus 444 -i---~~~~-v~~-~alWiLGEY~~~~~ 465 (867)
. +.+. +++ .++|++|.|+....
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 1 1233 333 69999999987644
No 81
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.18 E-value=0.037 Score=65.06 Aligned_cols=293 Identities=14% Similarity=0.141 Sum_probs=167.4
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcccccc--hHHHHHHHHccC-CChhHHHHHHHHHHhc-chhh---------------
Q 002905 142 HRHPYIRRNAILAVMAIYKLPQGEQLLVD--APEMIEKVLSTE-QDPSAKRNAFLMLFTC-DQDR--------------- 202 (867)
Q Consensus 142 d~~pyVRK~A~lal~kI~~l~~~p~li~d--~~~ll~~lL~~D-~D~~v~~~A~~~L~ei-~~~~--------------- 202 (867)
..-+-=||.|+.++..+-+ .++..+-. .+.++.. |.+| .|..+++.++..|..+ +++.
T Consensus 33 ~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~~~l~~li~~-L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~ 109 (651)
T 3grl_A 33 STLLDDRRNAVRALKSLSK--KYRLEVGIQAMEHLIHV-LQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL 109 (651)
T ss_dssp CCSHHHHHHHHHHHHHTTT--TTTTHHHHHTHHHHHHH-HHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred ccchhHHHHHHHHHHHHHH--HhHHHhhhhhHHHHHHH-HhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence 3566779999999999988 77755422 3455544 4444 6778888888777542 1110
Q ss_pred HH----------HHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHH-------HHHHHHHHHcCCChHHHHHHHHH
Q 002905 203 AI----------NYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK-------YIKIIISLLNAPSTAVIYECAGT 265 (867)
Q Consensus 203 al----------~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~-------li~~L~~lL~s~s~aV~~eaa~t 265 (867)
+. +.+.-+++-+...+.+.....+++|..++...|+.... =+..|..+|.+....|+-|++.+
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 01 11222333355778889999999999999888773322 34678889999999999999999
Q ss_pred HHhcCCChHHHHHH------HHHHHHHHccCCC---HHHHHHHHHHHHHHHhhCh---hhHHH--HHHhheecccCCCH-
Q 002905 266 LVSLSSAPTAIRAA------ANTYSQLLLSQSD---NNVKLIVLDRLNELRSSHR---DIMVD--LIMDVLRALNSPNL- 330 (867)
Q Consensus 266 L~~Ls~~p~~lk~a------a~~li~ll~~~sD---~Nvk~ivL~~L~~L~~~~p---~~l~~--~~~~il~~L~d~d~- 330 (867)
|..++.+.+.++++ ..+++.++-.+.. .-+--=.|..|..|.+.++ .+|.+ ++..+...|..++.
T Consensus 190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~ 269 (651)
T 3grl_A 190 LQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDEN 269 (651)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCS
T ss_pred HHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccc
Confidence 99998766666543 3566666644432 1121112333444444443 45543 44445445543221
Q ss_pred ------HHHH--HHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHH
Q 002905 331 ------DIRR--KTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMD 402 (867)
Q Consensus 331 ------~IR~--kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~ 402 (867)
-++. .+++++.-++.+.|-..-. ..-+ +++.++ -.+..|++
T Consensus 270 ~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t------------------~~nQ----~~~~~~---------g~l~~Ll~ 318 (651)
T 3grl_A 270 SGWSAQKVTNLHLMLQLVRVLVSPNNPPGAT------------------SSCQ----KAMFQC---------GLLQQLCT 318 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTCTTSCHHHH------------------HHHH----HHHHHT---------THHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCCCC------------------HHHH----HHHHHC---------CCHHHHHH
Confidence 0111 1444444444444321000 0000 111111 13445555
Q ss_pred HHcCCC--cccHHHHHHHHHHHHHhCcccHHH--------------HHHHHHHHhcccchHhHHHHHhhHhhccCCCCCc
Q 002905 403 FLGDSN--VASAIDVIIFVREIIEMNPKLRVS--------------IITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE 466 (867)
Q Consensus 403 lL~~~~--~~v~~evi~~l~~ii~~~p~lr~~--------------il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~ 466 (867)
++...+ ..+..+++..+.++++.+|..++. ++.-|+..+.+.....++.+++.++.-|...-++
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 555432 345566777777777766665554 3333555555556677899999999988766654
Q ss_pred HH
Q 002905 467 VE 468 (867)
Q Consensus 467 i~ 468 (867)
.+
T Consensus 399 ~Q 400 (651)
T 3grl_A 399 GQ 400 (651)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.15 E-value=0.045 Score=67.97 Aligned_cols=308 Identities=12% Similarity=0.141 Sum_probs=173.7
Q ss_pred CCHHHHHHHHHHhhcCCc------------------hhhHHHHHHHHHHhcCCCCh---------------HHHHHHHHH
Q 002905 108 PNEYIRGVTLRFLCRLNE------------------TEIIEPLIPSVLQNLQHRHP---------------YIRRNAILA 154 (867)
Q Consensus 108 pNe~IRglALr~Ls~I~~------------------~el~e~L~~~V~~~L~d~~p---------------yVRK~A~la 154 (867)
.++.++..|+.|++.+.+ ..++..+++.+.+.+..++. ..||.|..+
T Consensus 365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~ 444 (971)
T 2x1g_F 365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDT 444 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHH
Confidence 478899999998766532 12344445555555532221 478888888
Q ss_pred HHHhhccCCCcccccchHHHHHHHHcc----CCChhHHHHHHHHHHhcchh------hHHHHHHHHhhhcC--ccchHHH
Q 002905 155 VMAIYKLPQGEQLLVDAPEMIEKVLST----EQDPSAKRNAFLMLFTCDQD------RAINYLLTHVDRVS--EWGELLQ 222 (867)
Q Consensus 155 l~kI~~l~~~p~li~d~~~ll~~lL~~----D~D~~v~~~A~~~L~ei~~~------~al~~L~~~l~~i~--~~~p~lQ 222 (867)
+..++.. ....+++.+.+.+...|.. ..+...+-+|+.++..+... ..++.+...+.++. ...|.++
T Consensus 445 l~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr 523 (971)
T 2x1g_F 445 FMYCYDV-LNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLL 523 (971)
T ss_dssp HHHHHTT-CTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHH
Confidence 8888883 2334555555566555522 25777888999998877532 23444555555555 3478889
Q ss_pred HHHHHHHHHhhh---cCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-hH----HHHHHHHHHHHHHccC-CCH
Q 002905 223 MVVLELIRKVCR---TNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PT----AIRAAANTYSQLLLSQ-SDN 293 (867)
Q Consensus 223 ~~iL~ll~~~~~---~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~----~lk~aa~~li~ll~~~-sD~ 293 (867)
...+.++++|+. .+|.....+++.+...|. +.|.-.|+.++..+... .. .+..+...+..++-+. -++
T Consensus 524 ~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~ 600 (971)
T 2x1g_F 524 GTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKN 600 (971)
T ss_dssp HHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCCh
Confidence 999999999875 346666777787877773 66888888888876421 11 2333444455555432 368
Q ss_pred HHHHHHHHHHHHHHhhCh---------hhHHHHHHhheecccCC--CHHHHHHHH---HHHhccCC---C----------
Q 002905 294 NVKLIVLDRLNELRSSHR---------DIMVDLIMDVLRALNSP--NLDIRRKTL---DIVLELIT---P---------- 346 (867)
Q Consensus 294 Nvk~ivL~~L~~L~~~~p---------~~l~~~~~~il~~L~d~--d~~IR~kaL---elL~~Lv~---~---------- 346 (867)
+.+..+++.+..+...-| .++.+....+-.++..+ +..-+.... +.+..++. +
T Consensus 601 ~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~ 680 (971)
T 2x1g_F 601 SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQP 680 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccccc
Confidence 899999999999876432 12223222222333333 333333333 33332211 1
Q ss_pred --Cc----HHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc----CCccHHHHHHHHHHHHcCCCcccHHHHH
Q 002905 347 --RN----INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK----FPEVASTVVHLLMDFLGDSNVASAIDVI 416 (867)
Q Consensus 347 --~N----v~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k----f~~~a~~~v~~Ll~lL~~~~~~v~~evi 416 (867)
.. ++.+++.+.+-+..+ ..+.++.+.+...++.++.. +.+..+.+++.++..+.... . ..++
T Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~-----~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~--~-~~~l 752 (971)
T 2x1g_F 681 IVQPVLLVMQRTMPIFKRIAEMW-----VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC--C-APTL 752 (971)
T ss_dssp ---CCHHHHHTTHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C--C-HHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC--c-hHHH
Confidence 11 222333333222222 23568888888888886654 33444455555554444322 1 3466
Q ss_pred HHHHHHHHhCc
Q 002905 417 IFVREIIEMNP 427 (867)
Q Consensus 417 ~~l~~ii~~~p 427 (867)
..+..+++.+.
T Consensus 753 ~l~~~~i~~~~ 763 (971)
T 2x1g_F 753 EISKTAIVMFF 763 (971)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHhC
Confidence 77777777543
No 83
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.01 E-value=0.00027 Score=74.24 Aligned_cols=184 Identities=18% Similarity=0.238 Sum_probs=124.4
Q ss_pred cCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCC
Q 002905 105 LQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD 184 (867)
Q Consensus 105 L~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D 184 (867)
++||++.+|..|.+.|. ++ .+..+++|+++.||+.|+.. + .+ +.+..+ ..|.|
T Consensus 59 l~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~------L--~~-------~~L~~l-l~D~d 111 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYR------L--PR-------EQLSAL-MFDED 111 (244)
T ss_dssp TTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTT------S--CS-------GGGGGT-TTCSC
T ss_pred hcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHH------C--CH-------HHHHHH-HcCCC
Confidence 48999999999999753 22 25678899999999999953 2 11 234454 48999
Q ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHH
Q 002905 185 PSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAG 264 (867)
Q Consensus 185 ~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~ 264 (867)
+.|+..+...| .++ .|..+ ..+.+++.+..+..- . .+ +.+..+++..++.|+.+++.
T Consensus 112 ~~VR~~aA~~l---~~~----~L~~L---~~D~d~~VR~~aA~~---l---~~-------~~l~~l~~D~d~~VR~~aa~ 168 (244)
T 1lrv_A 112 REVRITVADRL---PLE----QLEQM---AADRDYLVRAYVVQR---I---PP-------GRLFRFMRDEDRQVRKLVAK 168 (244)
T ss_dssp HHHHHHHHHHS---CTG----GGGGG---TTCSSHHHHHHHHHH---S---CG-------GGGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CHH----HHHHH---HcCCCHHHHHHHHHh---c---CH-------HHHHHHHcCCCHHHHHHHHH
Confidence 99999888753 222 11111 346677777777652 2 11 24556778889999999998
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccC
Q 002905 265 TLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI 344 (867)
Q Consensus 265 tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv 344 (867)
. +. + .++..+.+++|+.||..+..++ -+ ..+...+.|+++.||..+..-+.
T Consensus 169 ~---l~--~--------~ll~~ll~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D~d~~VR~~aa~~l~--- 219 (244)
T 1lrv_A 169 R---LP--E--------ESLGLMTQDPEPEVRRIVASRL------RG-------DDLLELLHDPDWTVRLAAVEHAS--- 219 (244)
T ss_dssp H---SC--G--------GGGGGSTTCSSHHHHHHHHHHC------CG-------GGGGGGGGCSSHHHHHHHHHHSC---
T ss_pred c---CC--H--------HHHHHHHcCCCHHHHHHHHHhC------CH-------HHHHHHHcCCCHHHHHHHHHcCC---
Confidence 7 22 1 2344566899999999998864 11 23555789999999999988753
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHH
Q 002905 345 TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIH 383 (867)
Q Consensus 345 ~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~ 383 (867)
...| ..| + |.+..+|..+.+++|
T Consensus 220 --------~~~L-~~L-~------D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 --------LEAL-REL-D------EPDPEVRLAIAGRLG 242 (244)
T ss_dssp --------HHHH-HHC-C------CCCHHHHHHHHCCC-
T ss_pred --------HHHH-HHc-c------CCCHHHHHHHHHHhC
Confidence 1222 222 2 578899998887765
No 84
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.90 E-value=0.6 Score=59.61 Aligned_cols=402 Identities=12% Similarity=0.086 Sum_probs=203.5
Q ss_pred CCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHHHH
Q 002905 65 SEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPSVL 137 (867)
Q Consensus 65 S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~-------~~el~e~L~~~V~ 137 (867)
+.+...|+-+.-+++.+.+. |++ ...++-.|. -.+.++.+|-.|+..|-+.. .++-.+.+-..+.
T Consensus 24 ~~~~~~r~~Ae~~L~~~~~~-p~~-----~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 24 NSTQRYRLEALKFCEEFKEK-CPI-----CVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp TCCHHHHHHHHHHHHHHHHH-CTT-----HHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhC-chH-----HHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 34667788888888887443 332 233334343 34668899988886665431 2333333444444
Q ss_pred HhcC-------CCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh--------
Q 002905 138 QNLQ-------HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-------- 202 (867)
Q Consensus 138 ~~L~-------d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-------- 202 (867)
+.+. +..++||.+++.++..|.+. -.|+--|++.+-+-.++ . .++..+..++..|..+..+-
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~-d~p~~Wp~ll~~L~~~~-~-~~~~~~e~~L~iL~~L~Eev~~~~~~~~ 172 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKR-EWPQHWPDMLIELDTLS-K-QGETQTELVMFILLRLAEDVVTFQTLPP 172 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH-HSTTTCTTHHHHHHHHH-H-TCHHHHHHHHHHHHHHHHHHHTSCCSCH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHH-hCcccchHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHHccccchHH
Confidence 4432 14699999999999999984 33543344333333333 2 25555666777766654331
Q ss_pred --H--------------HHHHHHHhhhc-C---------------ccchHHHHHHHHHHHHhhhcCch-h----HHHHHH
Q 002905 203 --A--------------INYLLTHVDRV-S---------------EWGELLQMVVLELIRKVCRTNKG-E----KGKYIK 245 (867)
Q Consensus 203 --a--------------l~~L~~~l~~i-~---------------~~~p~lQ~~iL~ll~~~~~~~p~-~----~~~li~ 245 (867)
. +..+...+.+. . ..++-+...+|+.+..+..--|- . ...+++
T Consensus 173 ~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~ 252 (1204)
T 3a6p_A 173 QRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLE 252 (1204)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHH
Confidence 0 01111111110 0 01122344556666554322111 1 123666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhc---CCChHH----HH----HHHHHHHHHHc-cC-CC-HHHHHHHHHHHHHHH----
Q 002905 246 IIISLLNAPSTAVIYECAGTLVSL---SSAPTA----IR----AAANTYSQLLL-SQ-SD-NNVKLIVLDRLNELR---- 307 (867)
Q Consensus 246 ~L~~lL~s~s~aV~~eaa~tL~~L---s~~p~~----lk----~aa~~li~ll~-~~-sD-~Nvk~ivL~~L~~L~---- 307 (867)
.+..++.. +.++-.|+.+|..+ ...|.. +. .....++..+. .+ .+ .+-.+-.++.+.++.
T Consensus 253 ~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 253 ILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp HHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 66666553 33444455554443 322321 11 11123333332 11 01 122222222222211
Q ss_pred -------h-----hChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCC------cHHHHHHHHHHHH----HH--h
Q 002905 308 -------S-----SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR------NINEVVLMLKKEV----VK--T 363 (867)
Q Consensus 308 -------~-----~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~------Nv~~IV~~L~kel----~~--~ 363 (867)
. ..+..+..++..++++..+++..|...+++.-..+.... -...++..|..-+ .+ |
T Consensus 331 ~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~y 410 (1204)
T 3a6p_A 331 NQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGF 410 (1204)
T ss_dssp HHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 144556777888888889999999999998777554332 1334444444333 12 1
Q ss_pred hcCC-----------ccCC-------HHHHHHHHHHHHHhHccCCccHH-HHHHHHHHHHcCCC----------------
Q 002905 364 QSGE-----------LEKN-------GEYRQMLIQAIHSCAIKFPEVAS-TVVHLLMDFLGDSN---------------- 408 (867)
Q Consensus 364 ~~~~-----------~d~d-------~e~r~~lI~aI~~la~kf~~~a~-~~v~~Ll~lL~~~~---------------- 408 (867)
...+ .|.+ .+||+.+...+..|+..+|...- .+.+.+.+.+...-
T Consensus 411 p~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 490 (1204)
T 3a6p_A 411 PSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEG 490 (1204)
T ss_dssp SSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------
T ss_pred ccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccc
Confidence 1100 1111 36899999999999988887653 33334434444310
Q ss_pred --------cccHHHH-HHHHHHHHHh------CcccHHHHHHHHHHHhcc--cchHhHHHHHhhHhhccCCCCC----cH
Q 002905 409 --------VASAIDV-IIFVREIIEM------NPKLRVSIITRLLDNFYQ--IRAARVCTCALWIIGEYCQSLS----EV 467 (867)
Q Consensus 409 --------~~v~~ev-i~~l~~ii~~------~p~lr~~il~~L~~~L~~--i~~~~v~~~alWiLGEY~~~~~----~i 467 (867)
.....|+ +.++.-+++. .+++-..++..|+..+-. ...|.++...+-++|.|+.... -.
T Consensus 491 ~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L 570 (1204)
T 3a6p_A 491 SLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFL 570 (1204)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGH
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHH
Confidence 0111232 2233333221 244433467777776543 3578888888887776655543 23
Q ss_pred HHHHHHHHHhhC
Q 002905 468 ENGIATIKQCLG 479 (867)
Q Consensus 468 ~~~~~~i~~~l~ 479 (867)
..+++.|-..+.
T Consensus 571 ~~vL~~ll~~l~ 582 (1204)
T 3a6p_A 571 PQVFSKLFSSVT 582 (1204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 556666655554
No 85
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.88 E-value=0.53 Score=53.31 Aligned_cols=278 Identities=14% Similarity=0.188 Sum_probs=171.3
Q ss_pred cCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccC
Q 002905 105 LQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTE 182 (867)
Q Consensus 105 L~~pNe~IRglALr~Ls~I--~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D 182 (867)
....++-..-+|-.++.+. .-|++.+.-+.+...+.+|.++-||+.|+-.+..+.+ . +.++.+.+++-++|. .
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck--~--~~i~kiaDvL~QlLq-t 111 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT--G--ENLPRVADILTQLLQ-T 111 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC--T--TCHHHHHHHHHHHTT-C
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh--h--hhhhhHHHHHHHHHh-c
Confidence 3345688888999999987 4699999999999999999999999999999999999 4 667888899999885 4
Q ss_pred CCh---hHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhc------CchhHHHHHHHHHHHHcC
Q 002905 183 QDP---SAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRT------NKGEKGKYIKIIISLLNA 253 (867)
Q Consensus 183 ~D~---~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~------~p~~~~~li~~L~~lL~s 253 (867)
.|+ .++.+++..|...+|...+.-|. +++...++.....+|++|+.-... .++...-+...+..+|+.
T Consensus 112 dd~~E~~~V~~sL~sllk~Dpk~tl~~lf---~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 112 DDSAEFNLVNNALLSIFKMDAKGTLGGLF---SQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED 188 (507)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHH---HHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhcChHHHHHHHH---HHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc
Confidence 444 45888888888888876655444 333335688889999999764432 222234455677777755
Q ss_pred CChHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHH-----ccCCCHHH--HHHHHHHHHHHHh------hChhhHHHH
Q 002905 254 PSTAVIYECAGTLV---SLSSAPTAIRAAANTYSQLL-----LSQSDNNV--KLIVLDRLNELRS------SHRDIMVDL 317 (867)
Q Consensus 254 ~s~aV~~eaa~tL~---~Ls~~p~~lk~aa~~li~ll-----~~~sD~Nv--k~ivL~~L~~L~~------~~p~~l~~~ 317 (867)
.+. .-|.-.-.++ .+...++..+.++.-+.+.. ...+|... |++. .+..-.. ....++.=+
T Consensus 189 VT~-~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~--C~~~ALP~FS~~v~StkFv~y~ 265 (507)
T 3u0r_A 189 VTG-EEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQ--CTRQAVPLFSKNVHSTRFVTYF 265 (507)
T ss_dssp CCH-HHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHH--HHHHHGGGCBTTBCCHHHHHHH
T ss_pred ccH-HHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHH--HHHHHHHHhccCCChHHHHHHH
Confidence 443 3333222222 22333433333333322221 11234332 1111 1111111 123445545
Q ss_pred HHhheecccCCCH-----HHHHHHHHHHhccC---C-CCcHHHHHHHHHHHHHHhhc---CCc-----------cCCHHH
Q 002905 318 IMDVLRALNSPNL-----DIRRKTLDIVLELI---T-PRNINEVVLMLKKEVVKTQS---GEL-----------EKNGEY 374 (867)
Q Consensus 318 ~~~il~~L~d~d~-----~IR~kaLelL~~Lv---~-~~Nv~~IV~~L~kel~~~~~---~~~-----------d~d~e~ 374 (867)
...++..+++=+. ..|..-|.++..++ + .++..+.++.+...|..|.- .+. +-+-.|
T Consensus 266 ~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~ 345 (507)
T 3u0r_A 266 CEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSY 345 (507)
T ss_dssp HHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHH
T ss_pred HHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhH
Confidence 5556666655333 26767777666654 3 56666677766666655432 100 013457
Q ss_pred HHHHHHHHHHhHccCCccH
Q 002905 375 RQMLIQAIHSCAIKFPEVA 393 (867)
Q Consensus 375 r~~lI~aI~~la~kf~~~a 393 (867)
..-+.-+.|++|.+.|...
T Consensus 346 vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 346 VECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHHHHHhhhChhhh
Confidence 7889999999999988653
No 86
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.60 E-value=0.094 Score=54.43 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCC-ChH---HHHH--HHHHHHHHHccCCCHHHHHHHHHHHHHHHhh---ChhhH
Q 002905 244 IKIIISLLNAPSTAVIYECAGTLVSLSS-APT---AIRA--AANTYSQLLLSQSDNNVKLIVLDRLNELRSS---HRDIM 314 (867)
Q Consensus 244 i~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~---~lk~--aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~---~p~~l 314 (867)
++.|.++|.+.++.|..+|+.+|..++. +++ .+.. ++..++++|.+.++..++--+...|..|... .+.+.
T Consensus 54 Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~ 133 (233)
T 3tt9_A 54 ILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI 133 (233)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 4667777777777788888888777764 232 1111 4456777765456777777666666666532 12222
Q ss_pred HHHHHhheeccc----------------CCCHHHHHHHHHHHhccCCC
Q 002905 315 VDLIMDVLRALN----------------SPNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 315 ~~~~~~il~~L~----------------d~d~~IR~kaLelL~~Lv~~ 346 (867)
+.-+..+...+. ..+..++..+...|..|...
T Consensus 134 ~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~ 181 (233)
T 3tt9_A 134 TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181 (233)
T ss_dssp HHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS
T ss_pred hccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC
Confidence 322223332221 23678888888888888653
No 87
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=96.54 E-value=0.0091 Score=63.49 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=86.2
Q ss_pred ecceeEEEEEEeecCcccccceEEEEEecC----CeEEeecCCccccCCCCeEEEEEEEEEEecccceEEEEEEEecCCc
Q 002905 737 HHYDIVLDVTVINRTKETLQNLCLELATMG----DLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNV 812 (867)
Q Consensus 737 ~~~di~ldvl~vNqt~~tlqn~~~el~t~g----~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste~g~ifg~i~y~~~~~ 812 (867)
++--..+-+++.|+|+..|+|+++++.+.. .|++..+|.+-++.|++.......|++...=....-=+|.|... +
T Consensus 66 ~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~~pF~~~P~l~isf~~~-g 144 (273)
T 3hs8_A 66 RQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYG-G 144 (273)
T ss_dssp ETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCCCCCCEEEEEEEET-T
T ss_pred eCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEcccccCCCEEEEEEEEC-C
Confidence 444577788999999999999999998866 58888888889999999998888888877666666667778642 2
Q ss_pred cccceEEccccccccccccccCCCCcHHHHhhccccc
Q 002905 813 LERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFE 849 (867)
Q Consensus 813 ~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~fe 849 (867)
.-. -+.| -+-|-+-||+.|+..+..+|++.|...-
T Consensus 145 ~~~-~~~L-kLPi~~~kf~~p~~~~~~~F~~rWkql~ 179 (273)
T 3hs8_A 145 TFQ-NVSV-KLPITLNKFFQPTEMASQDFFQRWKQLS 179 (273)
T ss_dssp EEE-EEEE-ECCCCGGGGEEECCCCHHHHHHHHHHCC
T ss_pred eEE-EEEE-ecceehhheeccccCCHHHHHHHHHhcC
Confidence 222 2333 3567788999999999999999996443
No 88
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.54 E-value=0.17 Score=63.69 Aligned_cols=261 Identities=13% Similarity=0.144 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHhC--CCCCCchhHHHHHhhcCCCCc-chHHHH----------HHHHHHHhhcCCCCCCCchH-HHHH
Q 002905 33 AKVDAMKKAIMLLLN--GETLPQLFITIVRYVLPSEDH-TIQKLL----------LLYLEIIDKTDAKGRVLPEM-ILIC 98 (867)
Q Consensus 33 ~K~~alkklI~l~~~--G~d~s~l~~~VIk~v~~S~d~-~lKkL~----------Ylyl~~~~~~d~dg~l~~Em-iLv~ 98 (867)
.-.+.+++|...... +.+.+..|...++.+ ..-+. ++..+. -.|+..++.. |. ++. ..+.
T Consensus 289 ~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~l-R~~~~e~L~~l~~~~~~~~~~r~~~lDal~~a---GT--~~a~~~i~ 362 (1056)
T 1lsh_A 289 EIHTVLKHLVENNQLSVHEDAPAKFLRLTAFL-RNVDAGVLQSIWHKLHQQKDYRRWILDAVPAM---AT--SEALLFLK 362 (1056)
T ss_dssp HHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHH-TTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHH---CS--HHHHHHHH
T ss_pred HHHHHHHHHHhccccccCcchHHHHHHHHHHH-hcCCHHHHHHHHHHHhccHHHHHHHHHHhHhc---CC--HHHHHHHH
Confidence 344667766653221 244556677777743 33232 222111 1234444333 22 233 2334
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcc-----CCCc-ccccc
Q 002905 99 QNLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL-----PQGE-QLLVD 170 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I--~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l-----~~~p-~li~d 170 (867)
+.|++.=-++.+....++ ++..+ .++++++.+.+-+..--...+|++|+.|++|++.+... +.++ ++++.
T Consensus 363 ~~i~~~~l~~~ea~~~l~--~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~ 440 (1056)
T 1lsh_A 363 RTLASEQLTSAEATQIVA--STLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQP 440 (1056)
T ss_dssp HHHHTTCSCHHHHHHHHH--HHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHH
T ss_pred HHHHcCCCCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 445442223334333333 23333 34555554443322222236899999999999776541 1112 33444
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhc----CccchHHHHHHHHHHHHhhhcCchhHHHHHHH
Q 002905 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRV----SEWGELLQMVVLELIRKVCRTNKGEKGKYIKI 246 (867)
Q Consensus 171 ~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i----~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~ 246 (867)
+.+.+...+ ...|...+.-++.+|..+.....++.|..++... .....-++..++..|+++....|. ...+.
T Consensus 441 i~~~l~~~~-~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---~v~~i 516 (1056)
T 1lsh_A 441 LHDLLSQSS-DRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---KVQEI 516 (1056)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---HHHHH
T ss_pred HHHHHHHHH-hcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---HHHHH
Confidence 555665555 5667888899999999998777788888776543 122334678899999998766554 45566
Q ss_pred HHHHHcC--CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh
Q 002905 247 IISLLNA--PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (867)
Q Consensus 247 L~~lL~s--~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~ 309 (867)
+.++..+ ..+.|+..|...|+...+....++.++ ..+..++++.|+-.+...|..+...
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l~~ia----~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVA----VRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHH----HHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHCcCHHHHHHHH----HHHhhCchHHHHHHHHHHHHHHHhc
Confidence 7777743 467799999999998777665555554 4456778899999999999888764
No 89
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.47 E-value=0.081 Score=54.58 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCC-----chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHH
Q 002905 99 QNLRNNLQHPNEYIRGVTLRFLCRLN-----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~-----~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ 173 (867)
..+.+=+.++|+-|---|+|+|..+- +++-..-+..++...+.++++-.+=.|+-.+.++ + --+.++...+
T Consensus 78 d~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k---v~~~~~~V~~ 153 (265)
T 3b2a_A 78 DVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q---PLEDSKLVRT 153 (265)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C---BSCCCHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C---cccchHHHHH
Confidence 34444445555555555555554442 2333444445555555555555555555555554 2 1122344444
Q ss_pred HHHHHHccCCChhHHHHHHHHHHhcc
Q 002905 174 MIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 174 ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
.+-.++ ...|+.++.+|+.+|.++.
T Consensus 154 ~l~sLl-~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 154 YINELV-VSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHHHH-TCSSHHHHHHHHHHHHHHG
T ss_pred HHHHHH-hCCChhHHHHHHHHHHHhh
Confidence 554444 4555555555555555543
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.46 E-value=1.3 Score=55.57 Aligned_cols=434 Identities=12% Similarity=0.065 Sum_probs=203.2
Q ss_pred cccHHHHHHHh---cCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCc
Q 002905 16 PAIANEIKEAL---EGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (867)
Q Consensus 16 ~~~~~eIr~~L---~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~ 92 (867)
+..++++.+.| -+++...|..|-+.+--.... .+.-.....++. .+++...|-.+-.++...-+.+= ..+-+
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W-~~l~~ 86 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-PDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKW-KLLPN 86 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-TTGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTG-GGSCH
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-chHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhC-ccCCH
Confidence 44555555444 456766777777666544332 233334445543 46788889888888876533221 11212
Q ss_pred hH-H----HHHHHHHHhcCCC-----CHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 002905 93 EM-I----LICQNLRNNLQHP-----NEYIRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIY 159 (867)
Q Consensus 93 Em-i----Lv~NsL~KDL~~p-----Ne~IRglALr~Ls~I~---~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~ 159 (867)
|- - -+.+.+..--.+| +++||.-.-.+++.|. -|+--+.+++.+.+++. .++..+..+..++..+.
T Consensus 87 ~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 21 1 2234443332233 4788865555555543 33444567777777775 56666666666666555
Q ss_pred cc-C-CCcc-------------c---ccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH---------HHHHHHHhh
Q 002905 160 KL-P-QGEQ-------------L---LVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA---------INYLLTHVD 212 (867)
Q Consensus 160 ~l-~-~~p~-------------l---i~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a---------l~~L~~~l~ 212 (867)
.. . ..++ + .+++..++...|....++.++..|+.++...-.... ++.+...+-
T Consensus 166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245 (1049)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC
Confidence 30 0 1110 1 111223344444445567778888877764322111 122221110
Q ss_pred hcCccchHHHHHHHHHHHHhhhc--Cch---hHHHHHHH---HHHHHc----------------C--CChHHHHHHHHHH
Q 002905 213 RVSEWGELLQMVVLELIRKVCRT--NKG---EKGKYIKI---IISLLN----------------A--PSTAVIYECAGTL 266 (867)
Q Consensus 213 ~i~~~~p~lQ~~iL~ll~~~~~~--~p~---~~~~li~~---L~~lL~----------------s--~s~aV~~eaa~tL 266 (867)
.+|-++...++.|..+... .+. ...++... +...+. . .+..+....++.+
T Consensus 246 ----~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~ 321 (1049)
T 3m1i_C 246 ----TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFL 321 (1049)
T ss_dssp ----HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred ----CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHH
Confidence 1344455556665555433 121 11122111 111110 0 0111222222222
Q ss_pred HhcC--------CC---hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh------hChhhHHHHHHh----heecc
Q 002905 267 VSLS--------SA---PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS------SHRDIMVDLIMD----VLRAL 325 (867)
Q Consensus 267 ~~Ls--------~~---p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~------~~p~~l~~~~~~----il~~L 325 (867)
..+. .. ...+..+..-++... ..+|..+...+++-...+.+ .....+.++... ++..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m 400 (1049)
T 3m1i_C 322 TTYLARNRALLESDESLRELLLNAHQYLIQLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENM 400 (1049)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhc
Confidence 2211 11 111222222222222 35577777777776666654 122223333222 22111
Q ss_pred --c--------C---------CCH---HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHH
Q 002905 326 --N--------S---------PNL---DIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIH 383 (867)
Q Consensus 326 --~--------d---------~d~---~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~ 383 (867)
. + +|. ..|+.+-++|..++. -.-..++..+...+.....+ ...+...+..++.++|
T Consensus 401 ~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~-~~~~W~~~eaal~alg 478 (1049)
T 3m1i_C 401 VRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDG-SEWSWHNINTLSWAIG 478 (1049)
T ss_dssp CCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHH
T ss_pred CCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Confidence 0 0 011 334444444444432 12334555555555444321 1246778999999999
Q ss_pred HhHccCCccH-HHHHHHHHHHHcC---------CCcccHHHHHH---HHHHHHHhCcccHHHHHHHHHHHhcccchHhHH
Q 002905 384 SCAIKFPEVA-STVVHLLMDFLGD---------SNVASAIDVII---FVREIIEMNPKLRVSIITRLLDNFYQIRAARVC 450 (867)
Q Consensus 384 ~la~kf~~~a-~~~v~~Ll~lL~~---------~~~~v~~evi~---~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~ 450 (867)
.++....... ..++..++.+|.. ....++..+.. .+.+.+..+|+.-..+++.|++.+.+ ..+.+.
T Consensus 479 sia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~-~~~~V~ 557 (1049)
T 3m1i_C 479 SISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQ 557 (1049)
T ss_dssp HTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS-SCHHHH
T ss_pred HHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCHHHH
Confidence 9987654431 2334444444321 11112212222 22233445666666777777777754 357899
Q ss_pred HHHhhHhhccCCC
Q 002905 451 TCALWIIGEYCQS 463 (867)
Q Consensus 451 ~~alWiLGEY~~~ 463 (867)
..|+|.+..++..
T Consensus 558 ~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 558 DMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877664
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.37 E-value=0.25 Score=61.23 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=125.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCC-------cccccchHHHHHHHHccCCChhHHHHHHHHHHhc---ch
Q 002905 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG-------EQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC---DQ 200 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~-------p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei---~~ 200 (867)
.+...+++.+.++.+- -.|+.++..+++ .. |.+++-++.++.. ..|++..|+.+|-.++..+ .+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~~--~~dk~~~v~~aa~~~~~~~~~~~~ 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIAN--QSNLSPSVEPYIVQLVPAICTN--AGNKDKEIQSVASETLISIVNAVN 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTC--TTTCCTTTHHHHHTTHHHHHHH--TTCSSHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHH--hcCCCCCcccchHHHHHHHHHH--hcCCchHHHHHHHHHHHHHHHhCC
Confidence 4455555555554333 555555555554 22 1112212223322 2555555555544333322 22
Q ss_pred hhHHH-HHHHHhhhcCccchH-HHHHHHHHHHHhhhcCchhH----HHHHHHHHHHHcCCChHHHHHHHHHHHhc---CC
Q 002905 201 DRAIN-YLLTHVDRVSEWGEL-LQMVVLELIRKVCRTNKGEK----GKYIKIIISLLNAPSTAVIYECAGTLVSL---SS 271 (867)
Q Consensus 201 ~~al~-~L~~~l~~i~~~~p~-lQ~~iL~ll~~~~~~~p~~~----~~li~~L~~lL~s~s~aV~~eaa~tL~~L---s~ 271 (867)
..|+. .|..+++.+...+-| ..+..|+++.+++...|... ..++..+.+.+..+-+.|.-.|..++..+ -.
T Consensus 128 ~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 22322 222233333233345 34455666766665445432 34566666667777777766666655543 22
Q ss_pred ChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh------hChhhHHHHHHhheecccCCCHHHHHHHHHHHhcc--
Q 002905 272 APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS------SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLEL-- 343 (867)
Q Consensus 272 ~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~------~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~L-- 343 (867)
+. .+......+++-+. .++ + +=+.+..|.. .....++=.++-+.|.|++....++|++.=++-+|
T Consensus 208 n~-d~~~~~~~~~~~~~-~p~-~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 208 NK-DIERFIPSLIQCIA-DPT-E----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp CT-TTGGGHHHHHHHHH-CTT-H----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred Cc-chhhhHHHHHHHhc-Chh-h----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 21 12222333333332 222 1 2233334432 23344455556677889999999999987666554
Q ss_pred -C-CCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHh
Q 002905 344 -I-TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSC 385 (867)
Q Consensus 344 -v-~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~l 385 (867)
+ ++.-+...+..|+..+.+..+. -.++|.|...-+++..+
T Consensus 281 lv~~~~~~~~f~~~l~p~~~~~~~~--~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 281 LVEDPQVIAPFLGKLLPGLKSNFAT--IADPEAREVTLRALKTL 322 (986)
T ss_dssp TCCCHHHHHHHHTTTHHHHHHHTTT--CCSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHhhhhhhhhhHHHHHhhc--cCCHHHHHHHHHHHHHH
Confidence 4 4677778888888888775432 35889998887777665
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.079 Score=55.87 Aligned_cols=177 Identities=11% Similarity=0.073 Sum_probs=117.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhCCCCC------C---chhHHHHHhhcCCCCcchHHHHHHHHHHHhh-cCCCCCCC
Q 002905 22 IKEALEGNDVPAKVDAMKKAIMLLLNGETL------P---QLFITIVRYVLPSEDHTIQKLLLLYLEIIDK-TDAKGRVL 91 (867)
Q Consensus 22 Ir~~L~s~~~~~K~~alkklI~l~~~G~d~------s---~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~-~d~dg~l~ 91 (867)
+-..|.+.+=..|.+|+..+.-+....... . .-+...++-.+...|...-..+.-++..+.+ ..+.+..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 557899999999999999988776543211 0 1123344445577888777666666665533 22222212
Q ss_pred ch----HHHHHHHH-HHhcCCCCHHHHHHHHHHhhcCCchh-hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc
Q 002905 92 PE----MILICQNL-RNNLQHPNEYIRGVTLRFLCRLNETE-IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE 165 (867)
Q Consensus 92 ~E----miLv~NsL-~KDL~~pNe~IRglALr~Ls~I~~~e-l~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p 165 (867)
.. +-.++..| .|-|.++++-+|..|+.++..+.... -.+.+...+...+.|++|-||-.++..+.++... +++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~-fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA-FGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH-HTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-hCC
Confidence 21 22344444 46689999999999998887665332 2355677888899999999999999999998873 344
Q ss_pred cccc------chHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002905 166 QLLV------DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 166 ~li~------d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
..++ .+.+.+.++| .|.|+.|+.+|..++.++..
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHT
T ss_pred CcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHH
Confidence 3332 1223455555 89999999999999887643
No 93
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.22 E-value=1.2 Score=49.37 Aligned_cols=93 Identities=12% Similarity=0.225 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcC---CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHH
Q 002905 112 IRGVTLRFLCRL---NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAK 188 (867)
Q Consensus 112 IRglALr~Ls~I---~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~ 188 (867)
.+-..|+-+-.+ ++|++++.+++.|...-.+++..|||-.+--+...++ ..+++.+...+.+..+| .|.|+.|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~--~~~el~~~~l~~L~~LL-~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK--RDIELLLKLIANLNMLL-RDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH-TCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence 566777777765 7899999999999999999999999999999999999 88888888888887766 79999999
Q ss_pred HHHHHHHHhcchhhHHHHHH
Q 002905 189 RNAFLMLFTCDQDRAINYLL 208 (867)
Q Consensus 189 ~~A~~~L~ei~~~~al~~L~ 208 (867)
..++.+...+-|- +++|+.
T Consensus 118 K~~I~~~tslYpl-~f~~i~ 136 (386)
T 3o2t_A 118 KKAILTMTQLYKV-ALQWMV 136 (386)
T ss_dssp HHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHh
Confidence 9999888776654 455554
No 94
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.08 E-value=0.27 Score=55.63 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHH
Q 002905 218 GELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKL 297 (867)
Q Consensus 218 ~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ 297 (867)
++-.....-++|.+|....|+....-++.+.++....+..|+.+|++.|..+-.+ ..+..++..|.++|. ..|+.-.-
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLq-tdd~~E~~ 118 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQ-TDDSAEFN 118 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTT-CCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHh-ccchHHHH
Confidence 4545666778999999999999999999999999999999999999999999876 668889999999885 45666666
Q ss_pred HHHHHHHHHHhhChh-hHHHHHHhheecccCCCHHHHHHHHHHHh
Q 002905 298 IVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVL 341 (867)
Q Consensus 298 ivL~~L~~L~~~~p~-~l~~~~~~il~~L~d~d~~IR~kaLelL~ 341 (867)
++=..|..|...+|. .+.....+|.. .+..+|.++|..+.
T Consensus 119 ~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 119 LVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHH
Confidence 777778888877875 44444444432 36889999999884
No 95
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=96.05 E-value=0.033 Score=58.98 Aligned_cols=127 Identities=14% Similarity=0.238 Sum_probs=91.6
Q ss_pred hhcccCCCCcceEEEEeeeecceeEEEEEEeecCcc-cccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEec
Q 002905 718 ILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKE-TLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSST 796 (867)
Q Consensus 718 v~qltg~sDpvY~Ea~v~v~~~di~ldvl~vNqt~~-tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~st 796 (867)
-++||-----.=+-+.-++-.--|||..-+.|.=++ .|+||+|.+.+...++.+...+--.|.|++.-++...++-...
T Consensus 37 pv~LTE~EtEYvV~~vKHiF~~hiVlQF~i~NTL~dq~LenVsV~~~~~d~~~~~~~ipi~~L~~~~~g~~yV~l~~~~~ 116 (275)
T 1r4x_A 37 PVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLXYVPARSLPYNQPGTCYTLVALPKE 116 (275)
T ss_dssp CEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECTTCCEEEEEEEECCSS
T ss_pred cccccCCCCceEEEEEEEecCCcEEEEEEeEEccCcEEEeeEEEEEEcCCCceEEEeeeccccCCCCCccEEEEEEcCCC
Confidence 355655443334455555656679999999998776 6899999999877677777777778999999999999987642
Q ss_pred c----cceEEEE-EEEecC----C-------ccccceEEccccccccccccccCCCCcHHHHhhcccc
Q 002905 797 E----TGVIFGN-IVYETS----N-------VLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEF 848 (867)
Q Consensus 797 e----~g~ifg~-i~y~~~----~-------~~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~f 848 (867)
+ +|. |++ .-|-.+ + |-+..| .|+|+.|.+-|||+|...+ .|+..|.+.
T Consensus 117 ~~~~~~~t-f~~~LkF~vke~Dp~tGe~~deGyeDEY-~lEdlel~~~D~i~p~~~~--nF~~~We~l 180 (275)
T 1r4x_A 117 DPTAVACT-FSCMMKFTVKDCDPTTGETDDEGYEDEY-VLEDLEVTVADHIQKVMKL--NFEAAWDEV 180 (275)
T ss_dssp STTCCCEE-EEEEEEEEEEEBCTTTCCBCSCCEEEEE-ECCCEEECGGGGEEECCCS--CHHHHHHHH
T ss_pred ccccccce-eEEEEEEEEEeccCCCCCcCCCCccceE-EccceeechhhEEeecccC--chHHHHHhc
Confidence 2 233 444 333321 1 113445 7999999999999997654 799999987
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.99 E-value=0.026 Score=59.70 Aligned_cols=176 Identities=14% Similarity=0.146 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHhhee----cccCCCHHHHHHHHHHHhccCC----------CCcHHHHHHH
Q 002905 290 QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR----ALNSPNLDIRRKTLDIVLELIT----------PRNINEVVLM 355 (867)
Q Consensus 290 ~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~----~L~d~d~~IR~kaLelL~~Lv~----------~~Nv~~IV~~ 355 (867)
++|..-+.-+++.|.+.....|..+.....-+++ .+.|.+..+-.++|+++..+++ +.-+..+++.
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~ 136 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY 136 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4578888888999888877777654443322232 2347799999999999887642 1123455555
Q ss_pred HHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHH-
Q 002905 356 LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSII- 434 (867)
Q Consensus 356 L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il- 434 (867)
|.. +. . |....+|..+-+.+..+..-||+ ..+++.+++-+...+.-.+.+++..+..+++.+.--....+
T Consensus 137 Lve---Kl-G---d~k~~vR~~~r~il~~l~~v~~~--~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~ 207 (266)
T 2of3_A 137 LLL---KT-G---EAKDNMRTSVRDIVNVLSDVVGP--LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS 207 (266)
T ss_dssp HHH---GG-G---CSSHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC
T ss_pred HHH---Hh-C---CChHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 542 32 2 45577998888888777766654 46888899989998889999999999999987643334567
Q ss_pred --HHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHHHHHhhCCC
Q 002905 435 --TRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGEL 481 (867)
Q Consensus 435 --~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i~~~l~~~ 481 (867)
..+...+.+ +++.|+.+|+-.+.|--....+ .+++.+|.+
T Consensus 208 ~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~~Gd------~v~k~lg~L 249 (266)
T 2of3_A 208 VEKTVAPFVGD-KDVNVRNAAINVLVACFKFEGD------QMWKAAGRM 249 (266)
T ss_dssp HHHHHGGGGGC-SSHHHHHHHHHHHHHHHHHHTT------HHHHHHCCC
T ss_pred chHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhH------HHHHHHhcC
Confidence 777777776 6778888887777764443333 245555654
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.97 E-value=3 Score=52.28 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc-------hh----hHHHHHHHHH
Q 002905 69 TIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNE-------TE----IIEPLIPSVL 137 (867)
Q Consensus 69 ~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~-------~e----l~e~L~~~V~ 137 (867)
..|+-+.-|++.+.+ +|++ ...|-.+.. .+.++.+|-.|+..|-+... ++ +-+.++..+.
T Consensus 31 ~~r~~A~~~L~~~q~-sp~a------w~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~ 101 (1023)
T 4hat_C 31 VQQKQAQEILTKFQD-NPDA------WQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMII 101 (1023)
T ss_dssp HHHHHHHHHHHHHHH-CTTG------GGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CccH------HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHH
Confidence 477778888877743 3433 223333332 24577888888777754321 22 2223333343
Q ss_pred HhcCCC-----ChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh-----------
Q 002905 138 QNLQHR-----HPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD----------- 201 (867)
Q Consensus 138 ~~L~d~-----~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~----------- 201 (867)
+...++ .++||.+.+.++..|++. ..|+--|++.+-+-.++ . .++.....++..|..+..+
T Consensus 102 ~~~~~~~~i~~~~~i~nKLa~~la~I~~~-~~p~~Wp~~l~dL~~~l-~-~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~ 178 (1023)
T 4hat_C 102 SMCQDDEVFKTQKNLINKSDLTLVQILKQ-EWPQNWPEFIPELIGSS-S-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQ 178 (1023)
T ss_dssp HHHHSHHHHHHCHHHHHHHHHHHHHHHHH-HTTTTCTTHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCH
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHH-hChhhchHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHHHHhhhccchH
Confidence 332222 589999999999999984 34544444333222333 2 3444455555555433221
Q ss_pred -hH--------------HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchh---HHHHHHHHH-HHHcCCChHHHHHH
Q 002905 202 -RA--------------INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE---KGKYIKIII-SLLNAPSTAVIYEC 262 (867)
Q Consensus 202 -~a--------------l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~---~~~li~~L~-~lL~s~s~aV~~ea 262 (867)
+. +..+..++.. ..++-+...+|+.++.+..--|-. ...+++.+. .+|. ++.++-.|
T Consensus 179 ~r~~~lk~~l~~~~~~I~~ll~~iL~~--~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A 254 (1023)
T 4hat_C 179 AKALHLKNSMSKEFEQIFKLCFQVLEQ--GASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAIT 254 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHH
Confidence 10 1112222222 123334556778887775431211 124666666 6664 34556566
Q ss_pred HHHHHhc
Q 002905 263 AGTLVSL 269 (867)
Q Consensus 263 a~tL~~L 269 (867)
+.+|..+
T Consensus 255 ~ecL~eI 261 (1023)
T 4hat_C 255 LKCLTEV 261 (1023)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 98
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.79 E-value=0.25 Score=62.28 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=111.4
Q ss_pred CcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC----CCcchHHHHHHHHHHHh-hcC-CCC
Q 002905 15 TPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS----EDHTIQKLLLLYLEIID-KTD-AKG 88 (867)
Q Consensus 15 ~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S----~d~~lKkL~Ylyl~~~~-~~d-~dg 88 (867)
+.+.+.-|++.+.+++... .++.+-+......=.+-...+-....++ .+ ++..+++.++|.+..+. +.. .++
T Consensus 354 T~~a~~~i~~~i~~~~l~~-~ea~~~l~~~~~~~~Pt~e~l~~~~~l~-~~~~~~~~~~l~~ta~La~gslV~k~c~~~~ 431 (1056)
T 1lsh_A 354 TSEALLFLKRTLASEQLTS-AEATQIVASTLSNQQATRESLSYARELL-NTSFIRNRPILRKTAVLGYGSLVFRYCANTV 431 (1056)
T ss_dssp SHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHH-TCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHcCCCCH-HHHHHHHHHhhccCCCCHHHHHHHHHHH-hCcccccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 3456677788888765432 2243333332222245444444444433 33 35567777777765432 211 112
Q ss_pred CCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHh---cCCCChHHHHHHHHHHHHhhccCCC
Q 002905 89 RVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQN---LQHRHPYIRRNAILAVMAIYKLPQG 164 (867)
Q Consensus 89 ~l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~---L~d~~pyVRK~A~lal~kI~~l~~~ 164 (867)
...+|. --+.+.+.+-+...++.-+-.+|++||+++.|+.++.+.+.+... -.+....||..|+.|+.++-. ..
T Consensus 432 ~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~--~~ 509 (1056)
T 1lsh_A 432 SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK--RD 509 (1056)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG--TC
T ss_pred CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh--hc
Confidence 222343 345577777777778999999999999999998876555432211 122356799999999999887 66
Q ss_pred cccccchHHHHHH-HHccCCChhHHHHHHHHHHhcchhh
Q 002905 165 EQLLVDAPEMIEK-VLSTEQDPSAKRNAFLMLFTCDQDR 202 (867)
Q Consensus 165 p~li~d~~~ll~~-lL~~D~D~~v~~~A~~~L~ei~~~~ 202 (867)
|..+. +++.. +.....++.++.+|+.+|.+.+|..
T Consensus 510 p~~v~---~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~ 545 (1056)
T 1lsh_A 510 PRKVQ---EIVLPIFLNVAIKSELRIRSCIVFFESKPSV 545 (1056)
T ss_dssp HHHHH---HHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH
T ss_pred hHHHH---HHHHHHhcCCCCChHHHHHHHHHHHHHCcCH
Confidence 65443 33333 3346788999999999999988874
No 99
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=95.72 E-value=0.044 Score=59.48 Aligned_cols=126 Identities=15% Similarity=0.235 Sum_probs=91.2
Q ss_pred hcccCCCCcceEEEEeeeecceeEEEEEEeecCcc-cccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecc
Q 002905 719 LQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKE-TLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTE 797 (867)
Q Consensus 719 ~qltg~sDpvY~Ea~v~v~~~di~ldvl~vNqt~~-tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste 797 (867)
++||----=.=+-|.-++-.--|||..-+.|.=++ .|+||+|.+.+...+..+...+--.|.|++..++...++-..-+
T Consensus 85 v~LTE~EtEYvV~~vKHiF~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~~~~~~~ip~~~L~~~~~g~~yv~~~~~~~~ 164 (322)
T 1pzd_A 85 VALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPARSLPYNQPGTCYTLVALPKED 164 (322)
T ss_dssp EECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECBTCCEEEEEEEECCSSC
T ss_pred ccccCCCceeEEEEEEEeccCcEEEEEEEEEccCceEEeeEEEEEecCCCceEEEEEEHhHCCCCCCeeEEEEEEecCCC
Confidence 44544333333445555556679999999998776 68999999998777888888888889999999999999876432
Q ss_pred ----cceEEEE-EEEecC----C-------ccccceEEccccccccccccccCCCCcHHHHhhcccc
Q 002905 798 ----TGVIFGN-IVYETS----N-------VLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEF 848 (867)
Q Consensus 798 ----~g~ifg~-i~y~~~----~-------~~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~f 848 (867)
.|. |++ .-|-.+ + |-+..| .|+|+.|.+-|||+|...+ .||..|.+.
T Consensus 165 ~~~~~~~-f~~~LkF~vke~Dp~TGe~~deGyeDEY-~lEdlel~~~D~i~p~~~~--nF~~~We~l 227 (322)
T 1pzd_A 165 PTAVACT-FSCVMKFTVKDCDPTTGEADDEGYEDEY-VLEDLEVTIADHIQKVMKL--NFEAAWDEV 227 (322)
T ss_dssp TTCCCEE-EEEEEEEEEEEBCTTTCCBCSCCEEEEE-ECCCEEECGGGGEEECCCS--CHHHHHHHH
T ss_pred CCccceE-EEEEEEEEEEeecCCCCCcCCCCccceE-EccceeechhhEeeecccC--chHHHHHhc
Confidence 233 444 333321 1 223445 7999999999999997654 799999987
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.63 E-value=0.84 Score=57.01 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHhhcCCch------------hhHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHhhccCCCcccccc
Q 002905 108 PNEYIRGVTLRFLCRLNET------------EIIEPLIPSVLQNLQ-----HRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (867)
Q Consensus 108 pNe~IRglALr~Ls~I~~~------------el~e~L~~~V~~~L~-----d~~pyVRK~A~lal~kI~~l~~~p~li~d 170 (867)
++=..+-+||..|+.+.+- +.++.+++.+.+.+. ++||.||..++.++.+..+ ....--.-
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~--~~~~~~~~ 532 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS--FFDYESAA 532 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG--GGGTCCTT
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH--HHhcCchh
Confidence 4556678888887776542 234456666666655 8899999999999999877 43321112
Q ss_pred hHHHHHHHHc----cCCChhHHHHHHHHHHhcchh
Q 002905 171 APEMIEKVLS----TEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 171 ~~~ll~~lL~----~D~D~~v~~~A~~~L~ei~~~ 201 (867)
.+..+.-++. .++++.|+..|..+|..++.+
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 3445544431 366778888888887766544
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.41 Score=50.24 Aligned_cols=167 Identities=13% Similarity=0.186 Sum_probs=94.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhccCCCcccc---------cchHHHHHHHHccCCChhHHHHHHHHHHhcchh-----
Q 002905 136 VLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL---------VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD----- 201 (867)
Q Consensus 136 V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li---------~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~----- 201 (867)
+.+-|.|++--.|+.|+..+.+++. ..+... -+....+.+++ .|+|..|...|+.++..+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~--~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFR--NSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHH--TC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHh--hCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 4568999999999999999999987 433221 12356777776 899999999998887765321
Q ss_pred ----hH---H-HHHHHHhhh-cCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--
Q 002905 202 ----RA---I-NYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS-- 270 (867)
Q Consensus 202 ----~a---l-~~L~~~l~~-i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls-- 270 (867)
.. . ..+..++.. +.+..+-.....++.+..++... .....+++.+...+.+.+|-|+.+|...|..+-
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 00 1 122233333 34444444445555555444321 112345666777777777777777777665531
Q ss_pred --C---ChH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 002905 271 --S---APT-AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELR 307 (867)
Q Consensus 271 --~---~p~-~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~ 307 (867)
. ++. .++.+...+.. ++.++|++||-.+...+..+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k-~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQ-LAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHH-HHTCSSHHHHHHHHHHHHHHH
T ss_pred hCCCcCCchhHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHH
Confidence 1 111 12222222222 235566666666665555554
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.24 E-value=1.4 Score=55.31 Aligned_cols=101 Identities=8% Similarity=0.008 Sum_probs=66.1
Q ss_pred HHHHhcCC--CCHHHHHHHHHHhhcCCc-------hhhHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHhhcc-CCC
Q 002905 100 NLRNNLQH--PNEYIRGVTLRFLCRLNE-------TEIIEPLIPSVLQNLQH-----RHPYIRRNAILAVMAIYKL-PQG 164 (867)
Q Consensus 100 sL~KDL~~--pNe~IRglALr~Ls~I~~-------~el~e~L~~~V~~~L~d-----~~pyVRK~A~lal~kI~~l-~~~ 164 (867)
.+.+-+.+ ++-..|-.|+=++|.|.. ...++.++|.+..++++ +++.||.+++.+++++.+- ...
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444 567888888888888642 23556677777777764 6778888999999987650 023
Q ss_pred cccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002905 165 EQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 165 p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
|+.++.....+-.+| .|+++.|..+|..+|..++.+
T Consensus 535 ~~~L~~vl~~L~~~l-~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 535 WNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHH
Confidence 333333323333333 677899999999998887764
No 103
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.19 E-value=0.88 Score=47.00 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHh-hChhhHHHH
Q 002905 240 KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQL-LLSQSDNNVKLIVLDRLNELRS-SHRDIMVDL 317 (867)
Q Consensus 240 ~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~l-l~~~sD~Nvk~ivL~~L~~L~~-~~p~~l~~~ 317 (867)
...++.....+.++....|++-|+..|.++.+.+ .+-++++- +..+...-||+.+-..+..+.. .+|+..-+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~~~~~-----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~- 142 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDK-----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP- 142 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTSH-----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH-
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhccCcH-----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH-
Confidence 4567788888889999999999999999883222 23344543 6677888999999999999885 78874222
Q ss_pred HHhheecccCCCHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH
Q 002905 318 IMDVLRALNSPNLDIRRKTLDIVLE----LITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA 393 (867)
Q Consensus 318 ~~~il~~L~d~d~~IR~kaLelL~~----Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a 393 (867)
.+..-..|++..|||.|++-+.- ..-..|-+.++..|. ...+ |++..+|+.+-.+|..++...|+
T Consensus 143 --~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~----~L~~---D~s~yVrKSVan~LrD~SK~~Pd-- 211 (240)
T 3l9t_A 143 --IIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIA----DLKE---DVSEYVRKSVGNALRDISKKFPD-- 211 (240)
T ss_dssp --HHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHH----TTTT---CSCHHHHHHHHHHHHHHHTTCHH--
T ss_pred --HHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHH----HhcC---ChHHHHHHHHHHHHHHHhhhCHH--
Confidence 24456789999999999998743 223466666665443 2222 56778888899999999987765
Q ss_pred HHHHHHHH
Q 002905 394 STVVHLLM 401 (867)
Q Consensus 394 ~~~v~~Ll 401 (867)
|+.+++-
T Consensus 212 -~V~~~~~ 218 (240)
T 3l9t_A 212 -LVKIELK 218 (240)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 5555443
No 104
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.19 E-value=1.8 Score=45.40 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcC---CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHH
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRL---NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I---~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ 173 (867)
++..+...-.++++ .+-..|+-+-.+ ++|++++.+++.+.....+++..|||-.+-=+...++ ..+++.+...+
T Consensus 17 v~~lln~A~~~~~~-~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~--~k~~l~~~~l~ 93 (257)
T 3gs3_A 17 VVDWCNELVIASPS-TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK--VKVELLPHVIN 93 (257)
T ss_dssp HHHHHHHHTTCCHH-HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred HHHHHHHhhhcCcH-HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34444444444553 666666655542 4799999999999998888999999999988888888 88888888877
Q ss_pred HHHHHHccCCChhHHHHHHHHHHhcchhhHHHHH
Q 002905 174 MIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYL 207 (867)
Q Consensus 174 ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L 207 (867)
.+..+| .|.|+.|.+.|+.+...+-|- +++|+
T Consensus 94 ~L~~Ll-~d~d~~V~K~~I~~~~~iY~~-~l~~i 125 (257)
T 3gs3_A 94 VVSMLL-RDNSAQVIKRVIQACGSIYKN-GLQYL 125 (257)
T ss_dssp HHHHHT-TCSCHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHH-HHHHH
Confidence 777665 789999999999887766553 34443
No 105
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.17 E-value=0.015 Score=60.92 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=120.6
Q ss_pred HHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 002905 59 VRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQ 138 (867)
Q Consensus 59 Ik~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~ 138 (867)
++.++.++++.+|+.+-.++ . + ..+.+-++|||+.||..|...|+. +.+..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l------~------~------~~l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ 105 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS------P------V------EALTPLIRDSDEVVRRAVAYRLPR-----------EQLSA 105 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------C------G------GGGGGGTTCSSHHHHHHHHTTSCS-----------GGGGG
T ss_pred HHHHhcCCCHHHHHHHHHhC------C------H------HHHHHHccCcCHHHHHHHHHHCCH-----------HHHHH
Confidence 33345677777777653321 1 1 235666799999999999987541 24567
Q ss_pred hcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccc
Q 002905 139 NLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWG 218 (867)
Q Consensus 139 ~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~ 218 (867)
.++|+++.||..|+..+ . + +.+.. |.+|.|+.|+..+... +.++ .+. .-..+.+
T Consensus 106 ll~D~d~~VR~~aA~~l----~----~-------~~L~~-L~~D~d~~VR~~aA~~---l~~~----~l~---~l~~D~d 159 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL----P----L-------EQLEQ-MAADRDYLVRAYVVQR---IPPG----RLF---RFMRDED 159 (244)
T ss_dssp TTTCSCHHHHHHHHHHS----C----T-------GGGGG-GTTCSSHHHHHHHHHH---SCGG----GGG---GTTTCSC
T ss_pred HHcCCCHHHHHHHHHhC----C----H-------HHHHH-HHcCCCHHHHHHHHHh---cCHH----HHH---HHHcCCC
Confidence 89999999999988742 1 1 23334 3489999999988874 2222 111 1123556
Q ss_pred hHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHH
Q 002905 219 ELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLI 298 (867)
Q Consensus 219 p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~i 298 (867)
+.....+..- .. + +.+..++...++.|+.+++..+ . +. .+..|..++|+.||..
T Consensus 160 ~~VR~~aa~~---l~---~-------~ll~~ll~D~d~~VR~aaa~~l---~--~~--------~L~~Ll~D~d~~VR~~ 213 (244)
T 1lrv_A 160 RQVRKLVAKR---LP---E-------ESLGLMTQDPEPEVRRIVASRL---R--GD--------DLLELLHDPDWTVRLA 213 (244)
T ss_dssp HHHHHHHHHH---SC---G-------GGGGGSTTCSSHHHHHHHHHHC---C--GG--------GGGGGGGCSSHHHHHH
T ss_pred HHHHHHHHHc---CC---H-------HHHHHHHcCCCHHHHHHHHHhC---C--HH--------HHHHHHcCCCHHHHHH
Confidence 6666666553 11 1 3455677888999999999873 2 11 2333468999999999
Q ss_pred HHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHH
Q 002905 299 VLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDI 339 (867)
Q Consensus 299 vL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLel 339 (867)
+..++. + + .+. .|.|++..||..+.+-
T Consensus 214 aa~~l~------~----~---~L~-~L~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 214 AVEHAS------L----E---ALR-ELDEPDPEVRLAIAGR 240 (244)
T ss_dssp HHHHSC------H----H---HHH-HCCCCCHHHHHHHHCC
T ss_pred HHHcCC------H----H---HHH-HccCCCHHHHHHHHHH
Confidence 998864 1 1 122 3499999999988653
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.17 E-value=0.16 Score=52.67 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHhhcCC--ch----hhHH-HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc
Q 002905 96 LICQNLRNNLQHPNE--YIRGVTLRFLCRLN--ET----EIIE-PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ 166 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe--~IRglALr~Ls~I~--~~----el~e-~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~ 166 (867)
+.+-.+.+-|+++++ -++..|..++.++. .+ .+++ -.+|.+++.|.+.++.||+.|+.|+..+-. .+++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~--~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF--EDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHH
Confidence 445677788888887 77777767766654 22 2222 258999999999999999999999999976 4442
Q ss_pred c---ccc--hHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002905 167 L---LVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 167 l---i~d--~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
- +-+ ..+.+-++|....+..++.+|..+|..+..
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 2 211 234444566345788999999988887753
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.02 E-value=0.15 Score=60.04 Aligned_cols=203 Identities=17% Similarity=0.189 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHcC-CChHHHHHHHHHHHhcCCC-hHHH-HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHhhChhhH
Q 002905 239 EKGKYIKIIISLLNA-PSTAVIYECAGTLVSLSSA-PTAI-RAAANTYSQLLLSQ-SDNNVKLIVLDRLNELRSSHRDIM 314 (867)
Q Consensus 239 ~~~~li~~L~~lL~s-~s~aV~~eaa~tL~~Ls~~-p~~l-k~aa~~li~ll~~~-sD~Nvk~ivL~~L~~L~~~~p~~l 314 (867)
.....++.|.+.+++ +-..=+..|+..|-.++.. +..+ ..+...+++.|-++ .|..+--.+|+.|..+....+.-
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~- 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE- 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc-
Confidence 345556555555554 3455777777777777642 3333 23456677776554 45666556777776654322110
Q ss_pred HHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH-
Q 002905 315 VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA- 393 (867)
Q Consensus 315 ~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a- 393 (867)
+. .. .-......+...-.|.+. .+++|+..++..|. +.+.+.|-..++.|..++..-|...
T Consensus 97 -~~-~~---~~~~~~~~~~~~~~d~f~--~~~~~i~~Ll~lL~-----------~~df~vR~~alqlL~~L~~~r~~~~Q 158 (651)
T 3grl_A 97 -EV-EE---NSTRQSEDLGSQFTEIFI--KQQENVTLLLSLLE-----------EFDFHVRWPGVKLLTSLLKQLGPQVQ 158 (651)
T ss_dssp ----------------CHHHHHHHHHH--HSTHHHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred -cc-cc---cccccchHHHHHHHHHHH--cCCccHHHHHHHhc-----------CccHHHHHHHHHHHHHHHhcCcHHHH
Confidence 00 00 000001112222233332 35667776665442 2467888899999998887666522
Q ss_pred ------HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHhcc---cchHhHHHHHhhHhhc
Q 002905 394 ------STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRV-----SIITRLLDNFYQ---IRAARVCTCALWIIGE 459 (867)
Q Consensus 394 ------~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~-----~il~~L~~~L~~---i~~~~v~~~alWiLGE 459 (867)
+.-+..|+++|.+..+.++.|++..+.++.+.+++.+. .+.++|++.+.. ++.+.+..-|+-++.-
T Consensus 159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 24567899999999999999999999999999999875 356777777754 3334455555555443
Q ss_pred c
Q 002905 460 Y 460 (867)
Q Consensus 460 Y 460 (867)
-
T Consensus 239 L 239 (651)
T 3grl_A 239 L 239 (651)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.98 E-value=1.8 Score=53.63 Aligned_cols=195 Identities=13% Similarity=0.215 Sum_probs=123.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhhe
Q 002905 245 KIIISLLNAPSTAVIYECAGTLVSLS--SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVL 322 (867)
Q Consensus 245 ~~L~~lL~s~s~aV~~eaa~tL~~Ls--~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il 322 (867)
..+........+.|+-.|..++-.+- -+|.+++.+...++..+-+...+..|.-+|..+..|....|..+.....+++
T Consensus 98 ~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (986)
T 2iw3_A 98 PAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELI 177 (986)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchh
Confidence 45555666666666655444444331 2366778888888888866668999999999999999877887765555544
Q ss_pred ----ecccCCCHHHHHHHHHHHh---ccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc-cCC----
Q 002905 323 ----RALNSPNLDIRRKTLDIVL---ELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI-KFP---- 390 (867)
Q Consensus 323 ----~~L~d~d~~IR~kaLelL~---~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~-kf~---- 390 (867)
.|..|--.+|++.|.+.+. .++..+-|+..++.|.+-+.+ ++= +-.+||.++. .|-
T Consensus 178 p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~---------p~~---~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 178 PVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD---------PTE---VPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC---------TTH---HHHHHHHHTTCCCCSCCC
T ss_pred cchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC---------hhh---hHHHHHHhhcCeeEeeec
Confidence 5567888899986666555 555677788888877765542 222 3344555442 342
Q ss_pred -ccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHh----cccchHhHHH
Q 002905 391 -EVASTVVHLLMDFLGDSNVASAIDVIIFVREIIE--MNPKLRVSIITRLLDNF----YQIRAARVCT 451 (867)
Q Consensus 391 -~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~--~~p~lr~~il~~L~~~L----~~i~~~~v~~ 451 (867)
+...-.+++|.+-|......+...++..+.++.. .+|.--...+.+|+.-+ +.+..|+++.
T Consensus 246 ~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 246 PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 3345677777777877776666667666666654 34443333444444433 3444555443
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.87 E-value=0.5 Score=48.84 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=92.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHH-hcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHH
Q 002905 99 QNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQ-NLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEK 177 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~-~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~ 177 (867)
...+.=.+|+...+|+.|...|+.. . .. +.+.+.+++ ...|.+-.||--++.++..+..- .+|+. ..+.+..
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~-~~pe~---~l~~~~~ 146 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK-IEYKK---ALPIIDE 146 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH-HCTTT---THHHHHH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh-cCHHH---HHHHHHH
Confidence 3444445788889999999999998 3 33 778899998 77899999999999999998841 45542 3456666
Q ss_pred HHccCCChhHHHHHHHHHHh--------cchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchh
Q 002905 178 VLSTEQDPSAKRNAFLMLFT--------CDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE 239 (867)
Q Consensus 178 lL~~D~D~~v~~~A~~~L~e--------i~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~ 239 (867)
.+ .|.|+-|+|.|...+.- .+|+..++.|..+ ..+.+.+.|-.+=.-|+.+++.+|+.
T Consensus 147 W~-~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L---~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 147 WL-KSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL---KEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp HH-HCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT---TTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred Hh-cCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 55 89999999999877532 2223223332222 24567778888888888888887754
No 110
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=94.75 E-value=0.15 Score=53.33 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=89.2
Q ss_pred ecceeEEEEEEeecCcccccceEEEEEecC----CeEEeecCCccccCCCCeEEEEEEEEEEecccceEEEEEEEecCCc
Q 002905 737 HHYDIVLDVTVINRTKETLQNLCLELATMG----DLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNV 812 (867)
Q Consensus 737 ~~~di~ldvl~vNqt~~tlqn~~~el~t~g----~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste~g~ifg~i~y~~~~~ 812 (867)
++.--.+-+++-|.|+..|+|+++++..-+ +|++.-+|.+-++.|+++......|.....=.+.---+|.|... +
T Consensus 40 ~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i~v~~~~~f~~~P~l~isf~~~-g 118 (247)
T 1kyf_A 40 RQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYG-G 118 (247)
T ss_dssp ETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCCCCCCEEEEEEEET-T
T ss_pred eCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEEEEEEccccCCCCEEEEEEEEC-C
Confidence 555667778999999999999999997754 48888888888999999999999999988777777778888754 2
Q ss_pred cccceEEccccccccccccccCCCCcHHHHhhccccc
Q 002905 813 LERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFE 849 (867)
Q Consensus 813 ~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~fe 849 (867)
.- +-+.|. +-|=|--|++|...+.++|.+.|..+-
T Consensus 119 ~~-~~~~Lk-LPi~l~KF~~p~~~~~~~Ff~rW~~l~ 153 (247)
T 1kyf_A 119 TF-QNVSVK-LPITLNKFFQPTEMASQDFFQRWKQLS 153 (247)
T ss_dssp EE-EEEEEE-CCCCGGGGEEECCCCHHHHHHHHTTCC
T ss_pred ee-eEEEEe-cCcEEEEeecCCcCCHHHHHHHHHhcc
Confidence 22 223443 667788999999999999999999764
No 111
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.17 E-value=0.59 Score=49.35 Aligned_cols=175 Identities=13% Similarity=0.172 Sum_probs=110.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhCCCCC----CchhHH--HHHhhcCCCCcchHHHHHHHHHHH-hhcCC-CCCCCc
Q 002905 21 EIKEALEGNDVPAKVDAMKKAIMLLLNGETL----PQLFIT--IVRYVLPSEDHTIQKLLLLYLEII-DKTDA-KGRVLP 92 (867)
Q Consensus 21 eIr~~L~s~~~~~K~~alkklI~l~~~G~d~----s~l~~~--VIk~v~~S~d~~lKkL~Ylyl~~~-~~~d~-dg~l~~ 92 (867)
++...|-++|...+.+++..|.-......+- ..+++. .+++ .++|+.+=.-+.=++..+ ..+.. +..+.+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~--~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRF--FETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHT--TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 4555566677888888888887765533210 112222 2232 356776554444444442 22211 123322
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch
Q 002905 93 -EMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA 171 (867)
Q Consensus 93 -EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~ 171 (867)
|.-..+-.+.--+.|+++-+|..+-..+-.+..---...+.+.+.+++.|+|+.+|--.+..+..+... ++.. -...
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~-~G~~-~~~~ 205 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN-AGIS-PLKS 205 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-HCSG-GGGG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh-cCCC-cccc
Confidence 344556778888899999999877665544432112223677888899999999999999999988873 4433 1223
Q ss_pred H---HHHHHHHccCCChhHHHHHHHHHHhcch
Q 002905 172 P---EMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 172 ~---~ll~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
. +.+-++| .|.|..|+.+|+.++.++-.
T Consensus 206 l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 206 LSVEKTVAPFV-GDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp GCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 4 4455655 89999999999999887643
No 112
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.78 E-value=3.9 Score=45.35 Aligned_cols=102 Identities=18% Similarity=0.354 Sum_probs=76.7
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCC--CCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH
Q 002905 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGET--LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d--~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi 95 (867)
.+-++.+.-....+.+|++.|+++=-+....++ ++.+|..++.|. ..++.++||.+-=|++..
T Consensus 26 ~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~-~d~~~~vRk~~a~FieEa-------------- 90 (386)
T 3o2t_A 26 RVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQ-ADKSIEVRKFVIGFIEEA-------------- 90 (386)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGG-GCSCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHH--------------
Confidence 344444444432346899999999887776554 467888899855 677899999986666533
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002905 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
| . ...+++..+++.+...|++.++.|-|+|+.|...+|+
T Consensus 91 --~---~---------------------~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp 129 (386)
T 3o2t_A 91 --C---K---------------------RDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYK 129 (386)
T ss_dssp --H---H---------------------HCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred --H---H---------------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1 0 2467778888888999999999999999999999998
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.93 E-value=10 Score=39.61 Aligned_cols=144 Identities=14% Similarity=0.247 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHh--------ccCCCCcH----H---HHHH
Q 002905 290 QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVL--------ELITPRNI----N---EVVL 354 (867)
Q Consensus 290 ~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~--------~Lv~~~Nv----~---~IV~ 354 (867)
+++..+|.-+.+-+.+....++.++...+..+...|+|+|+.|-|+++.... .+++..++ + +-+.
T Consensus 64 ~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~ 143 (257)
T 3gs3_A 64 DSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS 143 (257)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 3444555555555555555555555555555544555566666665555332 23333331 1 2333
Q ss_pred HHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccC-------------------C------------ccHHHHHHHHHHH
Q 002905 355 MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF-------------------P------------EVASTVVHLLMDF 403 (867)
Q Consensus 355 ~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf-------------------~------------~~a~~~v~~Ll~l 403 (867)
.++..+...-+ ..+.-.|-.+++-+..+..-+ | ..+...++.|+++
T Consensus 144 ~lK~~Il~~~~---s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~ 220 (257)
T 3gs3_A 144 LIKAQILDMID---NENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQF 220 (257)
T ss_dssp HHHHHHHHGGG---SSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---cCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 44544444332 134556666666665544211 1 1246788889998
Q ss_pred HcCCC--cccHHHHHHHHHHHHHhCcccHHHHHHH
Q 002905 404 LGDSN--VASAIDVIIFVREIIEMNPKLRVSIITR 436 (867)
Q Consensus 404 L~~~~--~~v~~evi~~l~~ii~~~p~lr~~il~~ 436 (867)
+.... +.....++..+.-|+++.|.....|++.
T Consensus 221 ~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~a 255 (257)
T 3gs3_A 221 HGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEA 255 (257)
T ss_dssp HTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHHh
Confidence 77542 2234456778888999999887776654
No 114
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.15 E-value=11 Score=47.51 Aligned_cols=135 Identities=10% Similarity=0.112 Sum_probs=70.7
Q ss_pred HHHHHHh-hcCC---chhhHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhhc-cCCCcccccchHHHHHHHHccCC
Q 002905 114 GVTLRFL-CRLN---ETEIIEPLIPSVLQNLQHRH-----PYIRRNAILAVMAIYK-LPQGEQLLVDAPEMIEKVLSTEQ 183 (867)
Q Consensus 114 glALr~L-s~I~---~~el~e~L~~~V~~~L~d~~-----pyVRK~A~lal~kI~~-l~~~p~li~d~~~ll~~lL~~D~ 183 (867)
..|++++ +.+. +...++.+++.+....++++ +-||.+....+++.-+ +...|..++.....+-.++ .|+
T Consensus 500 ~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m-~~~ 578 (1073)
T 3gjx_A 500 CWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM-HET 578 (1073)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH-hcC
Confidence 3455555 3333 23567777777777777763 4455555566766433 0013333333333333343 688
Q ss_pred ChhHHHHHHHHHHhcchh---hH--------HHHHHHHhhh----cCccchHHHHHHHHHHHHhhhcCchh--HHHHHHH
Q 002905 184 DPSAKRNAFLMLFTCDQD---RA--------INYLLTHVDR----VSEWGELLQMVVLELIRKVCRTNKGE--KGKYIKI 246 (867)
Q Consensus 184 D~~v~~~A~~~L~ei~~~---~a--------l~~L~~~l~~----i~~~~p~lQ~~iL~ll~~~~~~~p~~--~~~li~~ 246 (867)
++.|..+|..+|..++.+ .- .+|+..+++. .....+-.+..+.+.++.+...-|.. +..+++.
T Consensus 579 ~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~ 658 (1073)
T 3gjx_A 579 HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEK 658 (1073)
T ss_dssp STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 999999888888776533 11 1244433332 12334555566666666665544432 3444444
Q ss_pred HHH
Q 002905 247 IIS 249 (867)
Q Consensus 247 L~~ 249 (867)
+.+
T Consensus 659 Lm~ 661 (1073)
T 3gjx_A 659 YML 661 (1073)
T ss_dssp HTH
T ss_pred HHH
Confidence 433
No 115
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=90.35 E-value=27 Score=39.68 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=40.7
Q ss_pred HHHHHhCcccHHHHHHHHHHHhcc---------cchHhHHHHHhhHhhccCCCCCcHHHHHHHH
Q 002905 420 REIIEMNPKLRVSIITRLLDNFYQ---------IRAARVCTCALWIIGEYCQSLSEVENGIATI 474 (867)
Q Consensus 420 ~~ii~~~p~lr~~il~~L~~~L~~---------i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i 474 (867)
++=+.+..+-.-+++++|++.|+. -+++.+.+.|+.=||||+.+.|.....++.+
T Consensus 383 ~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l 446 (480)
T 1ho8_A 383 SDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT 446 (480)
T ss_dssp HHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc
Confidence 333344444455789999999974 2467899999999999999999877665543
No 116
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.21 E-value=17 Score=46.20 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhH-------c-----cCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhC----cccHHHHH
Q 002905 371 NGEYRQMLIQAIHSCA-------I-----KFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN----PKLRVSII 434 (867)
Q Consensus 371 d~e~r~~lI~aI~~la-------~-----kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~----p~lr~~il 434 (867)
+.+|++.+.+.+..++ . +-++....+++.++.+..+....+...+..|-..+++.. ++....++
T Consensus 315 d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l 394 (1204)
T 3a6p_A 315 HYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAII 394 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 4566666666555544 1 134456789999999999887677777666655555431 12233466
Q ss_pred HHHHHHh
Q 002905 435 TRLLDNF 441 (867)
Q Consensus 435 ~~L~~~L 441 (867)
.+|++.+
T Consensus 395 ~~Ll~vl 401 (1204)
T 3a6p_A 395 PKYLRAS 401 (1204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 117
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=86.67 E-value=15 Score=39.70 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=94.8
Q ss_pred HcCCChHHHHHHHHHHHh-cCCChHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhh---------ChhhHH
Q 002905 251 LNAPSTAVIYECAGTLVS-LSSAPTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSS---------HRDIMV 315 (867)
Q Consensus 251 L~s~s~aV~~eaa~tL~~-Ls~~p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~---------~p~~l~ 315 (867)
|++++......+...|-. ++.+++.+.. -..++++.. .+.+.|..--+|.++.++... +|.+++
T Consensus 127 L~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~ 205 (339)
T 3dad_A 127 LYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ 205 (339)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhccccccchhCCHHHHH
Confidence 334444445445444444 3333333222 335566655 677999999999999998753 444444
Q ss_pred HHHHhheecccCCCHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH
Q 002905 316 DLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA 393 (867)
Q Consensus 316 ~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~--~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a 393 (867)
.+...+++.+..|.+.||+||..+|.. .|...+..... +.. -...-++
T Consensus 206 ----~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~-----------------------~v~-~~~~~~p-- 255 (339)
T 3dad_A 206 ----WLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVN-----------------------SVA-STTGAPP-- 255 (339)
T ss_dssp ----HHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH-----------------------HHH-HHHCCCT--
T ss_pred ----HHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHH-----------------------Hhh-hccCCCc--
Confidence 355566678999999999999877643 25554333221 110 0111112
Q ss_pred HHHHHHHHHHHc---CCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhh
Q 002905 394 STVVHLLMDFLG---DSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIG 458 (867)
Q Consensus 394 ~~~v~~Ll~lL~---~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLG 458 (867)
...|+..|. .....+...++..|-.++.+-|+-.. ...+.+.|+...-..+....+|..|
T Consensus 256 ---~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~--~~di~d~Le~~gi~~~i~r~l~~~~ 318 (339)
T 3dad_A 256 ---WANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDS--FYDVTDALEQQGMEALVQRHLGTAG 318 (339)
T ss_dssp ---THHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHH--HHHHHHHHHHTTHHHHHHHHHSCTT
T ss_pred ---HHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhH--HHHHHHHHHHccHHHHHHHHHhccC
Confidence 445777776 33345555666777777777775221 2345555554333333333344433
No 118
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=85.86 E-value=5.2 Score=41.88 Aligned_cols=111 Identities=13% Similarity=0.230 Sum_probs=75.1
Q ss_pred cceeEEEEEEeecCcccccceEEEEEecC-CeEEeecCCc-cccCCCCeEEEEEEEEEEecccceEEE-----EEEEecC
Q 002905 738 HYDIVLDVTVINRTKETLQNLCLELATMG-DLKLVERPQN-YTLAPESSKQIKANIKVSSTETGVIFG-----NIVYETS 810 (867)
Q Consensus 738 ~~di~ldvl~vNqt~~tlqn~~~el~t~g-~lk~v~~p~~-~~l~p~~~~~~~~~ikv~ste~g~ifg-----~i~y~~~ 810 (867)
+=-|.||+.+.|++...+.++.|.|-... +|.....++- ..|.|++...+...+... |.... ++---.+
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~~~----~~~~~~~p~~~LQVAIK 129 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTL----GPVMKMEPLNNLQVAVK 129 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEEEEESC----SCBCCCSSTTEEEEEEE
T ss_pred CCEEEEEEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCCCcEEEEEeeecC----CcccCCCCCchheeeee
Confidence 44599999999999999999999997666 6766654332 459999877766655432 21111 1100011
Q ss_pred CccccceEEcccccccccccccc-CCCCcHHHHhhccccccceeEE
Q 002905 811 NVLERTVVVLNDIHIDIMDYISP-AVCTDAAFRTMWAEFEWENKVS 855 (867)
Q Consensus 811 ~~~~~~~v~ln~i~idi~dyi~p-~~~~~~~FR~mW~~feWENki~ 855 (867)
+.. .+..++ +.+++--+..| ..++..+|.++|..+.=+|...
T Consensus 130 tn~--~vfYF~-~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE~~ 172 (258)
T 2g30_A 130 NNI--DVFYFS-CLIPLNVLFVEDGKMERQVFLATWKDIPNENELQ 172 (258)
T ss_dssp CSS--CEEEEE-EECCGGGGBCSCCCCCHHHHHHHHHHSCGGGCEE
T ss_pred cCC--ceEEEE-eecCHHHhcCCcCccCHHHHHHHHhhCCCcccee
Confidence 111 245555 66777777777 8999999999999988776543
No 119
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=85.74 E-value=5.1 Score=46.39 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=130.2
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCC-----CCCchH---HHHHHHHHH--hcCCCC--HHHHHHHHHHhhcCC--chhhH
Q 002905 64 PSEDHTIQKLLLLYLEIIDKTDAKG-----RVLPEM---ILICQNLRN--NLQHPN--EYIRGVTLRFLCRLN--ETEII 129 (867)
Q Consensus 64 ~S~d~~lKkL~Ylyl~~~~~~d~dg-----~l~~Em---iLv~NsL~K--DL~~pN--e~IRglALr~Ls~I~--~~el~ 129 (867)
-+++=+.|.=+-+.+..+-+....| .+-.++ ++++=++-+ |.-+.. --||-.|-.+||.+. .++ .
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e-~ 262 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGP-N 262 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCS-C
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCChh-H
Confidence 4666677777777777665554321 111133 223233332 444432 446666555555552 122 2
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHH-
Q 002905 130 EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLL- 208 (867)
Q Consensus 130 e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~- 208 (867)
+ ++..+.+.+.++.--||--+.+++--+.. .-.+ ++.+.+.+...| .|.|-.|+..|..+|..+.....++-+.
T Consensus 263 ~-IL~qLV~~l~~~~WEVRHGGLLGLKYL~D--LL~~-Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA~p~~l~~LL~ 337 (800)
T 3oc3_A 263 D-IIEQLVGFLDSGDWQVQFSGLIALGYLKE--FVED-KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFPITDSLDLVLE 337 (800)
T ss_dssp C-HHHHHTTGGGCSCHHHHHHHHHHHHHTGG--GCCC-HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSCCSSTHHHHHH
T ss_pred H-HHHHHHhhcCCCCeeehhhhHHHHHHHHH--HHHH-HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhcchhhHHHHHH
Confidence 2 22223345577889999999999885522 1111 333444444444 8999999999999999987333343333
Q ss_pred ---HHhhhcCccchHHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 002905 209 ---THVDRVSEWGELLQMVVLELIRKVCRTNKG--EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTY 283 (867)
Q Consensus 209 ---~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~--~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~l 283 (867)
.++.+..+.++- --.++++|.++|...+. ....++..|.+++.++-++|+..+.+++..+. ....++-+.+.
T Consensus 338 iLWd~L~~LDDLSAS-TgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-~~~~LRLIFQN- 414 (800)
T 3oc3_A 338 KCWKNIESEELISVS-KTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-EESIDFLVAEV- 414 (800)
T ss_dssp HHHHHHHTCCSCCTT-HHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-CHHHHHHHHHH-
T ss_pred HHHHHhhhhcccchh-hHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-hhhHHHHHHHH-
Confidence 333333322222 45788888887754221 12367788899999999999999999998887 23333333222
Q ss_pred HHHHccCCCHHHHHHHHHHH
Q 002905 284 SQLLLSQSDNNVKLIVLDRL 303 (867)
Q Consensus 284 i~ll~~~sD~Nvk~ivL~~L 303 (867)
++ -+.+..++-.+++..
T Consensus 415 --IL-LE~neeIl~lS~~VW 431 (800)
T 3oc3_A 415 --VL-IEEKDEIREMAIKLL 431 (800)
T ss_dssp --HH-HCSCHHHHHHHHHHH
T ss_pred --HH-hCCcHHHHHHHHHHH
Confidence 22 355566666555544
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=83.90 E-value=7.6 Score=46.25 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=47.1
Q ss_pred HHHhcCCCCHHHHHHHHHHhhcCCch-h-----hHHHHHH-HHHHhcCCCChHHHHHHHHHHHHhhc
Q 002905 101 LRNNLQHPNEYIRGVTLRFLCRLNET-E-----IIEPLIP-SVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 101 L~KDL~~pNe~IRglALr~Ls~I~~~-e-----l~e~L~~-~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
+.+.|+|+++-.|..|+.+|++|... + +-+.+++ .|.++|.|+++-||..|+-|+..+..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 44569999999999999999998642 2 2223444 45778999999999999999988765
No 121
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.69 E-value=4.8 Score=46.59 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHH
Q 002905 256 TAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRK 335 (867)
Q Consensus 256 ~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~k 335 (867)
+.|+-.||.+|..+..-|+.. .+...++. ....+.+++|+-+|-.|..+...-.. +...+..++..|.|+|.+||--
T Consensus 242 APVRETaAQtLGaL~hLp~e~-~IL~qLV~-~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAV 318 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGPN-DIIEQLVG-FLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLL 318 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCSC-CHHHHHTT-GGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHH
T ss_pred eehHHHHHHHHHHHHhCChhH-HHHHHHHh-hcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHH
Confidence 347888888877762222221 22233332 23677899999777777666221111 4555666778899999999999
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHH
Q 002905 336 TLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDV 415 (867)
Q Consensus 336 aLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~ev 415 (867)
|.+.|.-++.+.-+..++..|-..|... + +......=.-.++.+++.....- ...+..++.|..|+...-..++..+
T Consensus 319 AAetLiPIA~p~~l~~LL~iLWd~L~~L-D-DLSASTgSVMdLLAkL~s~p~~a-~~dp~LVPRL~PFLRHtITSVR~AV 395 (800)
T 3oc3_A 319 SAELLCHFPITDSLDLVLEKCWKNIESE-E-LISVSKTSNLSLLTKIYRENPEL-SIPPERLKDIFPCFTSPVPEVRTSI 395 (800)
T ss_dssp HHHHHTTSCCSSTHHHHHHHHHHHHHTC-C-SCCTTHHHHHHHHHHHHHHCTTC-CCCSGGGGGTGGGGTCSSHHHHHHH
T ss_pred HHHHhhhhcchhhHHHHHHHHHHHhhhh-c-ccchhhHHHHHHHHHHHcCCccc-ccChHHHHHHHhhhcCCcHHHHHHH
Confidence 9999999998889999999988777653 2 11112222233444444433211 1112677778888888888888888
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHH
Q 002905 416 IIFVREIIEMNPKLRVSIITRLLDN 440 (867)
Q Consensus 416 i~~l~~ii~~~p~lr~~il~~L~~~ 440 (867)
+..+..++ -..++..+.+.
T Consensus 396 L~TL~tfL------~~~~LRLIFQN 414 (800)
T 3oc3_A 396 LNMVKNLS------EESIDFLVAEV 414 (800)
T ss_dssp HHHTTTCC------CHHHHHHHHHH
T ss_pred HHHHHHHH------hhhHHHHHHHH
Confidence 87666554 13445555553
No 122
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=82.38 E-value=1.9 Score=37.71 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=55.1
Q ss_pred EEeeeecceeEEEEEEeecCccccc-ceEEEEEecCCeEEeecC--CccccCCCCeEEEEE-----------EEEEEecc
Q 002905 732 AYVTVHHYDIVLDVTVINRTKETLQ-NLCLELATMGDLKLVERP--QNYTLAPESSKQIKA-----------NIKVSSTE 797 (867)
Q Consensus 732 a~v~v~~~di~ldvl~vNqt~~tlq-n~~~el~t~g~lk~v~~p--~~~~l~p~~~~~~~~-----------~ikv~ste 797 (867)
--|+|+|=|=.|-.-|.|.|+..|. |++++|++.||---|+.. .|+-|+|.+.+..+. |+||.-.+
T Consensus 13 L~Itvs~rDnsL~F~lyNntn~~lpGnCtl~fs~~g~~ptv~si~mGPHEigik~~ke~~~fp~~~~~~~~~t~~i~nq~ 92 (118)
T 2kzb_A 13 LQITMNQRDNSLYFQLFNNTNSVLAGNCKLKFTDAGDKPTTQIIDMGPHEIGIKEYKEYRYFPYALDLEAGSTIEIENQY 92 (118)
T ss_dssp EEEEEEEETTEEEEEEEECSSSCCCSSCEECCCSSSSSCCCCCEECCSCCCCTTCCEEEEECSCCCCCCTTCCEEEECTT
T ss_pred EEEEEecCCCeEEEEEecCCceeccCccEEEEecCCCCceEEEEecCccccccCcceEEEEccccCCcccCCeEEEEecC
Confidence 3588999999999999999999995 899999999985444332 455566666676663 78888887
Q ss_pred cceEE
Q 002905 798 TGVIF 802 (867)
Q Consensus 798 ~g~if 802 (867)
-.+||
T Consensus 93 ge~i~ 97 (118)
T 2kzb_A 93 GEVIF 97 (118)
T ss_dssp SSEEE
T ss_pred CcEEE
Confidence 77776
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=81.61 E-value=17 Score=36.80 Aligned_cols=85 Identities=9% Similarity=-0.127 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc---hhhHHHHHHH
Q 002905 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD---QDRAINYLLT 209 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~---~~~al~~L~~ 209 (867)
.+.+.+.+.|.+.++||.|+.+...-.+ ..+ .....++++..+ .|.+-.|..+.--+|.++. |+....||+
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~l~~~~---~~~-~~~~~~i~~~~~-~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl~- 199 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQLMLKE---KTN-QDLLKKAIIYDR-TTEEFFIQKAIGWSLRQYSKTNPQWVEELMK- 199 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTTTTCGG---GCC-HHHHHHHHHHTT-TCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH---CCC-HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHhhCHHHHHHHHh-
Confidence 3556778889999999999887653322 111 122345665543 7777777776667777765 455566761
Q ss_pred HhhhcCccchHHHHHHHH
Q 002905 210 HVDRVSEWGELLQMVVLE 227 (867)
Q Consensus 210 ~l~~i~~~~p~lQ~~iL~ 227 (867)
-...++|..-..++
T Consensus 200 ----~~~l~~~~~r~Aik 213 (220)
T 2b6c_A 200 ----ELVLSPLAQREGSK 213 (220)
T ss_dssp ----HSCCCHHHHHHHTT
T ss_pred ----hccCCHHHHHHHHH
Confidence 12455665555444
No 124
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=81.17 E-value=20 Score=36.47 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHH
Q 002905 19 ANEIKEALEGNDVPAKVDAMKKAI 42 (867)
Q Consensus 19 ~~eIr~~L~s~~~~~K~~alkklI 42 (867)
.++|++.|++-.+.++...|.+.+
T Consensus 6 ~~~i~~~L~~~ad~~~a~~~~~~~ 29 (232)
T 3jxy_A 6 VKALQEHFTAHQNPEKAEPMARYM 29 (232)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 368999999999999999998875
No 125
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.54 E-value=21 Score=44.88 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheeccc
Q 002905 247 IISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALN 326 (867)
Q Consensus 247 L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~ 326 (867)
+...+.++++..+-+|-..|..+..+|.+...+ ..+|.++.++++|+.++..|.....++-..+.+
T Consensus 33 lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~----~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~---------- 98 (1073)
T 3gjx_A 33 VVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRV----DTILEFSQNMNTKYYGLQILENVIKTRWKILPR---------- 98 (1073)
T ss_dssp HHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHH----TCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH----------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH----------
Confidence 334445566778888888898888888765533 234445678999999999998877654322211
Q ss_pred CCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc-CCccHHHHHHHHHHHHc
Q 002905 327 SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK-FPEVASTVVHLLMDFLG 405 (867)
Q Consensus 327 d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k-f~~~a~~~v~~Ll~lL~ 405 (867)
+.-..+|...++.+....+..+ ..+.++.++..+..++..++.+ ||...+..++-++.++.
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~------------------~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~ 160 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPT------------------CVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASR 160 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGG------------------GGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcc------------------ccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhC
Confidence 1112345544444443211100 0012345666666666666654 55554455555555553
No 126
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=79.26 E-value=2.7 Score=43.27 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHHH----HhhcCC----chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002905 105 LQHPNEYIRGVTLR----FLCRLN----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 105 L~~pNe~IRglALr----~Ls~I~----~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
..|+|++.|-.|+- .|+.+. ...-.+.+...+...+.|++.||||...-++..+++ .+|+....+.++-+
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk--~~~~~~~~al~~~~ 194 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI--SYVPLHEKAVEIAK 194 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHH
Confidence 35788898888888 555544 234556677777778889999999999999988888 78877776666665
Q ss_pred HH
Q 002905 177 KV 178 (867)
Q Consensus 177 ~l 178 (867)
.+
T Consensus 195 ~l 196 (235)
T 1t06_A 195 EV 196 (235)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 127
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=76.12 E-value=1.8e+02 Score=37.14 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHH--
Q 002905 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLS--SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD-- 316 (867)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls--~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~-- 316 (867)
..++.....++.|..+.|+-=++.....+- -+...-+.+...++....+.++.+|.- +|+.|..|...+|..+.+
T Consensus 399 ~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~-ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 399 PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDT-ALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHH-HHHHHHHHHhcCHHHHhHHH
Confidence 356666777888888876544444322221 122234567778888777777777766 999999999999998876
Q ss_pred -HHHhheecccCCCHHHHHHHHHHHhccCCCC------cH-HHHHHHHHHHHHHhhcCCccCCHHHHHH
Q 002905 317 -LIMDVLRALNSPNLDIRRKTLDIVLELITPR------NI-NEVVLMLKKEVVKTQSGELEKNGEYRQM 377 (867)
Q Consensus 317 -~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~------Nv-~~IV~~L~kel~~~~~~~~d~d~e~r~~ 377 (867)
++.-|+.++++-...==|+..+++..++-++ .+ +++--.++|++.. .+.+|++.
T Consensus 478 ~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~-------~~~~~Kri 539 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSS-------TVFKYKLI 539 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTC-------SSHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhC-------Cchhhhhh
Confidence 5566666666655433444588887655211 12 3444455666543 34567765
No 128
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=75.90 E-value=12 Score=44.48 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhccCCCcccc-----cch-HHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002905 136 VLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL-----VDA-PEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 136 V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li-----~d~-~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
+.+.|.+++|-+|..|+.|+..+.. +++.. .+. ..++..+| .|++..|+.+|+-+|..++.+
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL-~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETL-TDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhh
Confidence 4456899999999999999999987 34322 222 34566655 899999999999999887644
No 129
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.81 E-value=27 Score=33.70 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccc
Q 002905 253 APSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALN 326 (867)
Q Consensus 253 s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~------~~~~~il~~L~ 326 (867)
+.+-+...+.+..+-.-. ..-+.++..+.+.| +++++++.+.+|..|..+.++-...|. ++...+.+++.
T Consensus 30 ~~Dw~~~leicD~I~~~~---~~~keA~ral~krl-~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~ 105 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGSTP---NGAKDCLKAIMKRV-NHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK 105 (163)
T ss_dssp SCCHHHHHHHHHHHHHSS---SHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCC---ccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc
Confidence 334455555555544322 23455666666666 567889999888888888765222221 22333334443
Q ss_pred C-CCHHHHHHHHHHHhc
Q 002905 327 S-PNLDIRRKTLDIVLE 342 (867)
Q Consensus 327 d-~d~~IR~kaLelL~~ 342 (867)
. .++.||.|+++++..
T Consensus 106 ~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 106 NKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 3 567888888887653
No 130
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=74.19 E-value=6.4 Score=35.87 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=44.8
Q ss_pred EEEEEEeecCcccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEec
Q 002905 742 VLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSST 796 (867)
Q Consensus 742 ~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~st 796 (867)
+..+-|.|.|.++ |...|++.-+++++++. |++++++|++...+...+.+...
T Consensus 34 ~Ytlki~Nkt~~~-~~~~l~v~g~~~l~~~g-~~~i~v~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 34 TYTLKVINKTQQV-QEYNLDVKGLNDVSWYG-KQTIQVEPGEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEECSSSC-EEEEEEEESCSSCEEES-CCEEEECTTCEEEEEEEEEECGG
T ss_pred EEEEEEEECCCCC-EEEEEEEeCCcccEEeC-CCcEEECCCCEEEEEEEEEEChH
Confidence 4567899999999 88888888777899886 55799999999999999988543
No 131
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=74.08 E-value=1e+02 Score=33.31 Aligned_cols=114 Identities=19% Similarity=0.308 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHH--------HHhheecccCCCHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHH
Q 002905 290 QSDNNVKLIVLDRLNELRSSHRDIMVDL--------IMDVLRALNSPNLDIRRKTLDIVLELI-TPRNINEVVLMLKKEV 360 (867)
Q Consensus 290 ~sD~Nvk~ivL~~L~~L~~~~p~~l~~~--------~~~il~~L~d~d~~IR~kaLelL~~Lv-~~~Nv~~IV~~L~kel 360 (867)
.+.-.|--=++..+..+..+|+.+.+++ ...+-.+|.+++.-.||.+|.+|..+. +..|..-..
T Consensus 175 ~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~------- 247 (341)
T 1upk_A 175 MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT------- 247 (341)
T ss_dssp CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH-------
T ss_pred CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH-------
Confidence 3444455555556666666666544332 112234678888888999999998765 334443211
Q ss_pred HHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002905 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLD 439 (867)
Q Consensus 361 ~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~ 439 (867)
+|.+ ....+..+|.+|++....+..|+..+++=.+ -+|..-..|..-|..
T Consensus 248 -~Yis---------------------------~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV-ANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 248 -KYIS---------------------------KPENLKLMMNLLRDKSRNIQFEAFHVFKVFV-ANPNKTQPILDILLK 297 (341)
T ss_dssp -HHTT---------------------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-HCSSCCHHHHHHHHH
T ss_pred -HHhC---------------------------CHHHHHHHHHHhcCchhchhhhhhhheeeee-eCCCCChHHHHHHHH
Confidence 2222 1256888999999999999999998888555 578776767665555
No 132
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=73.33 E-value=6.2 Score=40.04 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHH-
Q 002905 101 LRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVL- 179 (867)
Q Consensus 101 L~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL- 179 (867)
+.+=..|+|+++|-.|+-.+=.-....-.+.+.+-+..++.|++-||||...-++.-+++ .+|+.+. .||
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k--~~~~~v~-------~fl~ 199 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK--TNPQWVE-------ELMK 199 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT--TCHHHHH-------HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh--hCHHHHH-------HHHh
Confidence 334457899999988887554333333445667777779999999999999999999999 7775443 333
Q ss_pred ccCCChhHHHHHH
Q 002905 180 STEQDPSAKRNAF 192 (867)
Q Consensus 180 ~~D~D~~v~~~A~ 192 (867)
....++.+.+-|+
T Consensus 200 ~~~l~~~~~r~Ai 212 (220)
T 2b6c_A 200 ELVLSPLAQREGS 212 (220)
T ss_dssp HSCCCHHHHHHHT
T ss_pred hccCCHHHHHHHH
Confidence 1344555555554
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.63 E-value=27 Score=32.85 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHhheecccC
Q 002905 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNS 327 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~------~~~~~il~~L~d 327 (867)
.+-+...+.+..+-.- +..-+.++..+.+.+ +++++++.+.+|..|..+.++-..-|. ++..++.++++.
T Consensus 21 ~dw~~ileicD~I~~~---~~~~k~a~rai~Krl-~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~ 96 (140)
T 3ldz_A 21 EDWGLILDICDKVGQS---RTGPKDCLRSIMRRV-NHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK 96 (140)
T ss_dssp CCHHHHHHHHHHHTTS---TTHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCC---CcCHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc
Confidence 3344555555443321 223355666665655 567788888888877777654222221 122233334445
Q ss_pred CCHHHHHHHHHHHhc
Q 002905 328 PNLDIRRKTLDIVLE 342 (867)
Q Consensus 328 ~d~~IR~kaLelL~~ 342 (867)
.++.||.+.++++..
T Consensus 97 ~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 97 GHPKVCEKLKALMVE 111 (140)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 567777777777763
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.29 E-value=26 Score=33.41 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHhheeccc-
Q 002905 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM------VDLIMDVLRALN- 326 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l------~~~~~~il~~L~- 326 (867)
.+-+...+.+..+-.-. ..-+.++..+.+.+ .++++++.+.+|..|..+.++-..-| .++...+.++++
T Consensus 27 ~dw~~ileicD~I~~~~---~~pk~a~ral~krl-~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~ 102 (149)
T 3g2s_A 27 LDWASINGFCEQLNEDF---EGPPLATRLLAHKI-QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSP 102 (149)
T ss_dssp CCHHHHHHHHHHGGGSS---SHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHCCC---CcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcc
Confidence 34455555555543322 22345555555555 46778888888887777765422222 123344445554
Q ss_pred -----CCCHHHHHHHHHHHhcc
Q 002905 327 -----SPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 327 -----d~d~~IR~kaLelL~~L 343 (867)
..+..||.|.|+++..-
T Consensus 103 k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 103 KYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp TTTGGGSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHH
Confidence 35789999999998853
No 135
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=69.37 E-value=1.3e+02 Score=32.51 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchH-----HHHHHHHccCCChhHHHHHHHHHHhc
Q 002905 135 SVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP-----EMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 135 ~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~-----~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
.+.+.|.+++.-.+|.|+..+.++++ .++++++++. ..+-+.. .+.+.....-++.+|.++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q--~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~L 187 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQ--EDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQL 187 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH--TCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhh--cchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHH
Confidence 34455557888999999999999998 7787776653 2333333 566666766666666654
No 136
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=69.20 E-value=1e+02 Score=31.27 Aligned_cols=188 Identities=12% Similarity=0.054 Sum_probs=105.9
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHH-HHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHH
Q 002905 18 IANEIKEALEGNDVPAKVDAMKKAI-MLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL 96 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI-~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiL 96 (867)
+.++|++.|+.-.+.++.+.|.+.. -....|..++.+= .+.+-+ .+++. ++.+.++ . + .+++.+|
T Consensus 2 ~~~~i~~~L~~l~d~~~a~~m~~~g~~~~~~GV~~P~lR-~lAK~~--~~~~~------la~~Lw~-~---~-~~E~r~l 67 (235)
T 1t06_A 2 DFKTVMQELEALGKERTKKIYISNGAHEPVFGVATGAMK-PIAKKI--KLNQE------LAEELYA-T---G-NYDAMYF 67 (235)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHTCCSSCCCCCGGGGH-HHHHTC--CCCHH------HHHHHHH-T---C-CHHHHHH
T ss_pred CHHHHHHHHHHccCHHHHHHHHHhCCCCccCCCchHHHH-HHHHHh--ccCHH------HHHHHHc-C---C-cHHHHHH
Confidence 4678999999998888888888871 1112233333221 122211 12221 2333331 1 1 1344566
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002905 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
++=- ..+..+.....=+++..+.+.++++.+ +..++. ..| ...+++.
T Consensus 68 A~li-----~~~~~~~~~~~~~~v~~~~nWd~~D~~----------------------~~~l~~--~~~----~~~~~~~ 114 (235)
T 1t06_A 68 AGII-----ADPKAMSESDFDRWIDGAYFYMLSDYV----------------------VAVTLS--ESN----IAQDVAD 114 (235)
T ss_dssp HHHH-----CCGGGCCHHHHHHHHHTCCSHHHHHHT----------------------HHHHHT--TSS----SHHHHHH
T ss_pred HHHh-----hCHHhcCHHHHHHHHhCCCcHHHHHHH----------------------HHHHHh--cCc----hHHHHHH
Confidence 5511 112222222233345555565555543 222233 233 2446677
Q ss_pred HHHccCCChhHHHHHHH----HHHhcch----hhHHHHHHHHhh-hcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 002905 177 KVLSTEQDPSAKRNAFL----MLFTCDQ----DRAINYLLTHVD-RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKII 247 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~----~L~ei~~----~~al~~L~~~l~-~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L 247 (867)
... .+.|.-++|.|+. +|..... +.....+...+. .+.+.+.++|..+=-+|+.++..+|....++++.-
T Consensus 115 ~W~-~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~ 193 (235)
T 1t06_A 115 KWI-ASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIA 193 (235)
T ss_dssp HHH-HSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHH-cCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 765 7888999999998 6665331 122333333333 56778889999999999999999999988888877
Q ss_pred HHHHcC
Q 002905 248 ISLLNA 253 (867)
Q Consensus 248 ~~lL~s 253 (867)
..+-.+
T Consensus 194 ~~l~~~ 199 (235)
T 1t06_A 194 KEVGIV 199 (235)
T ss_dssp HHHCEE
T ss_pred HHhccc
Confidence 766544
No 137
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=68.91 E-value=60 Score=31.01 Aligned_cols=88 Identities=13% Similarity=0.205 Sum_probs=52.7
Q ss_pred cCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHh-heec
Q 002905 252 NAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMD-VLRA 324 (867)
Q Consensus 252 ~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~------~~~~~-il~~ 324 (867)
.+.+-+...+.+..+-.-. ..-+.++..+.+.+....++++.+.+|..|..+..+-...|. ++..+ ++++
T Consensus 30 ~~~Dw~~~leicD~I~~~~---~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~ 106 (157)
T 1elk_A 30 QSEDWALNMEICDIINETE---EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRT 106 (157)
T ss_dssp SSCCHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHH
T ss_pred CCcCHHHHHHHHHHHhCCC---ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHH
Confidence 3344555556555443322 234567777777774457788999999888888765322221 12233 3344
Q ss_pred c---cCCCHHHHHHHHHHHhc
Q 002905 325 L---NSPNLDIRRKTLDIVLE 342 (867)
Q Consensus 325 L---~d~d~~IR~kaLelL~~ 342 (867)
+ .+++..||.|+|+++..
T Consensus 107 ~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 107 ILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HSTTTCCCHHHHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHH
Confidence 4 24567899999988875
No 138
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=68.82 E-value=2.6 Score=36.22 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=48.2
Q ss_pred EeeeecceeEEEEEEeecCccccc-ceEEEEEecCCeEEeecCCccccCCCCe-----EEEE-----------EEEEEEe
Q 002905 733 YVTVHHYDIVLDVTVINRTKETLQ-NLCLELATMGDLKLVERPQNYTLAPESS-----KQIK-----------ANIKVSS 795 (867)
Q Consensus 733 ~v~v~~~di~ldvl~vNqt~~tlq-n~~~el~t~g~lk~v~~p~~~~l~p~~~-----~~~~-----------~~ikv~s 795 (867)
.|+|+|=|=.|-..+.|.|+..|. |+++||+..| .--+.+.++||+- +..+ .|+||.-
T Consensus 10 ~i~~~~~DNSL~F~L~N~TN~ii~GNC~~~Fs~~~-----~~~~~I~MGPHEIGIK~~KE~~~FP~~~~~~s~~T~~i~N 84 (107)
T 2kzk_A 10 HVEVSNEDNSLHFILYNKTNIIIPGNCTFEFSSQI-----SEVFSIKMGPHEIGIKGQKELWFFPSLPTPLSNYTMKVVN 84 (107)
T ss_dssp EEEECCBTTBCCEEEECCSSSCCCSSCEEEBCCSS-----SCCBCCBCCSSCCCSSCEEECCCSSCCCSCCTTCCCEEEC
T ss_pred EEEEccCCCeEEEEEecCCceEecCcceEEEecCC-----CcEEEEecCccccccccceEEEeccccCCcccCCeEEEEe
Confidence 578999999999999999999985 9999999988 3335566788753 2222 3566666
Q ss_pred cccceEE
Q 002905 796 TETGVIF 802 (867)
Q Consensus 796 te~g~if 802 (867)
.+-.+||
T Consensus 85 Q~GE~I~ 91 (107)
T 2kzk_A 85 QDGETIL 91 (107)
T ss_dssp TTSCEEE
T ss_pred cCCcEEE
Confidence 6655555
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=66.62 E-value=27 Score=33.18 Aligned_cols=85 Identities=9% Similarity=0.180 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHhheecccC
Q 002905 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM------VDLIMDVLRALNS 327 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l------~~~~~~il~~L~d 327 (867)
.+-+...+.+..+-.- +..-+.++..+.+.+ +++++++.+.+|..|..+..+-..-| .++...+.++++.
T Consensus 17 ~dw~~~leicD~I~~~---~~~~k~a~rai~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~ 92 (148)
T 1mhq_A 17 QDWSAIQNFCEQVNTD---PNGPTHAPWLLAHKI-QSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHS---SHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHcC---CccHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHcc
Confidence 3334444544444332 223455666666665 57788888888888888776522222 2233444555543
Q ss_pred ------CCHHHHHHHHHHHhc
Q 002905 328 ------PNLDIRRKTLDIVLE 342 (867)
Q Consensus 328 ------~d~~IR~kaLelL~~ 342 (867)
.+..||.|.|+++..
T Consensus 93 k~~~~~~~~~Vk~kil~li~~ 113 (148)
T 1mhq_A 93 KYLGSWATGKVKGRVIEILFS 113 (148)
T ss_dssp STTSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHH
Confidence 478999999998875
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.56 E-value=34 Score=33.31 Aligned_cols=84 Identities=7% Similarity=0.105 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccc--
Q 002905 255 STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALN-- 326 (867)
Q Consensus 255 s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~------~~~~~il~~L~-- 326 (867)
+-+...+.+..+-.-. ..-+.++..+.+.+ +++++++.+.+|..|..+.++-...|. ++...+.++++
T Consensus 30 Dw~~ileicD~I~~~~---~~~k~A~ral~krl-~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k 105 (171)
T 1juq_A 30 DWEYIIGFCDQINKEL---EGPQIAVRLLAHKI-QSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPK 105 (171)
T ss_dssp CHHHHHHHHHHHHHST---THHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHcCC---ccHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccc
Confidence 3344444444443322 22345555555555 467788888888877777654222221 22333444443
Q ss_pred ----CCCHHHHHHHHHHHhc
Q 002905 327 ----SPNLDIRRKTLDIVLE 342 (867)
Q Consensus 327 ----d~d~~IR~kaLelL~~ 342 (867)
..+..||.|+|+++..
T Consensus 106 ~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 106 YLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp CCCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 2468999999998885
No 141
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=64.30 E-value=3.1e+02 Score=34.95 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhChhhHHHHHHhheec-ccCCCHHHHHHHHHHHhccCCCCcHH-HHHHHHHHHHHHhhcC----------
Q 002905 299 VLDRLNELRSSHRDIMVDLIMDVLRA-LNSPNLDIRRKTLDIVLELITPRNIN-EVVLMLKKEVVKTQSG---------- 366 (867)
Q Consensus 299 vL~~L~~L~~~~p~~l~~~~~~il~~-L~d~d~~IR~kaLelL~~Lv~~~Nv~-~IV~~L~kel~~~~~~---------- 366 (867)
+|-.+..-...++.+..++...+=.. ..+|+....--.+.+++.++.-.-.+ .+++.|+.-+.+....
T Consensus 271 VL~HI~~Aik~D~~Lgre~LK~~K~~~~~~p~~~l~PF~lalLLsvarI~Rf~e~v~d~Lk~~v~k~~~d~~~~~~S~Wl 350 (1308)
T 3s51_A 271 VILHIVFAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDLLKTSVVKSFKDLQLLQGSKFL 350 (1308)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHCCSSTHHHHHHCCHHHHHHHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHhhhcccCccccCChHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhHHHHHhcCHHH
Confidence 33334333344555555544332111 12233334455666677666654333 4444444433221110
Q ss_pred --CccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcc------c--------------HHHH-HHHHHHHH
Q 002905 367 --ELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVA------S--------------AIDV-IIFVREII 423 (867)
Q Consensus 367 --~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~------v--------------~~ev-i~~l~~ii 423 (867)
.......+...+...+.....-...+.+..+++=+-+|...++. . +.+. ...+.++.
T Consensus 351 r~l~p~~~~v~~~ll~~V~~S~~g~d~Vv~gLV~LgF~LLds~~~k~~~~g~~~e~~~~~~~~p~q~a~~LG~~IL~~~F 430 (1308)
T 3s51_A 351 QTLVPQRTCVSTMILEVVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGKAVEIGTSLSKMTNQHACKLGANILLETF 430 (1308)
T ss_dssp HHHSCCCCCHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHSCCTTSCC---------CTHHHHHHHHHHHHHHHHHH
T ss_pred HhccCccchHHHHHHHHHhcCcccchhhHHHHHHHHHHHHhccCccccCCCcccccccccccChHHHHHHHHHHHHHHHH
Confidence 00011234444555555444444455556666555555421110 0 0111 24566777
Q ss_pred HhCcccHHHHHHHHHHHh
Q 002905 424 EMNPKLRVSIITRLLDNF 441 (867)
Q Consensus 424 ~~~p~lr~~il~~L~~~L 441 (867)
..++..|..|++++++.+
T Consensus 431 k~h~~~r~~Iieqi~~RI 448 (1308)
T 3s51_A 431 KIHEMIRQEILEQVLNRV 448 (1308)
T ss_dssp HHCGGGHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 788888888888888865
No 142
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=63.50 E-value=8.1 Score=39.53 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=89.5
Q ss_pred HHhhcCCCCcchHHHHHHHHHHHhh-cCCCCCCCchHHHHHHHHHHhcCCCC-HHHHHHHHHHhhcC--CchhhHHHHHH
Q 002905 59 VRYVLPSEDHTIQKLLLLYLEIIDK-TDAKGRVLPEMILICQNLRNNLQHPN-EYIRGVTLRFLCRL--NETEIIEPLIP 134 (867)
Q Consensus 59 Ik~v~~S~d~~lKkL~Ylyl~~~~~-~d~dg~l~~EmiLv~NsL~KDL~~pN-e~IRglALr~Ls~I--~~~el~e~L~~ 134 (867)
+..+..+..++.+-++..++....+ .++ +.+-....+... -.| ..+-++|-+.++++ +.|+- +.+
T Consensus 66 ~~~L~~~~~~E~r~~ai~~l~~~~k~~~~------~~l~~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~~---~~~ 134 (232)
T 3jxy_A 66 IRELWDLPEREFQAAALDIMQKYKKHINE------THIPFLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPEL---ISA 134 (232)
T ss_dssp HHHHHTSSBHHHHHHHHHHHHHTGGGCCG------GGHHHHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGGG---GGG
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHHH---HHH
Confidence 3345577777877777777664422 222 222222233332 334 23334444443333 24441 223
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc---hhhHHHHHHHHh
Q 002905 135 SVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD---QDRAINYLLTHV 211 (867)
Q Consensus 135 ~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~---~~~al~~L~~~l 211 (867)
.+.+.+.|.++++||.|+.++...+.- .++ ....+++...+ .|.+--|.-+.--+|.++. |+....||.+.
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~-~d~---~~~~~~i~~~~-~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~~- 208 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQK-MDE---ELLFWIIGQLH-SSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNN- 208 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGGG-CCH---HHHHHHHHHHT-TCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHS-
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhC-CCH---HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHC-
Confidence 466788999999999999887654431 122 23456777754 8999999887777777775 55556777654
Q ss_pred hhcCccchHHHHHHHHHHHH
Q 002905 212 DRVSEWGELLQMVVLELIRK 231 (867)
Q Consensus 212 ~~i~~~~p~lQ~~iL~ll~~ 231 (867)
..++|..-..++-|.+
T Consensus 209 ----~l~~~~~r~A~k~l~~ 224 (232)
T 3jxy_A 209 ----ELAPLSKREAIKHIKQ 224 (232)
T ss_dssp ----CCCHHHHHHHTTTTHH
T ss_pred ----CCCHHHHHHHHHhccc
Confidence 4678877777766654
No 143
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=62.54 E-value=1.9e+02 Score=31.99 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch----HHHHHHHHccCCChhHHHHHHHHHHhc
Q 002905 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA----PEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~----~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
.+-.+..++.+.+|.=|-..-..+.+||. +...+.+-. .+++.+|+........+...+..|..|
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~--kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsI 198 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYG--KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSI 198 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 45556778899999999998899999998 665543322 234444443222333343444444443
No 144
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=60.59 E-value=3.3e+02 Score=34.82 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002905 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (867)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~ 320 (867)
..+.+.+.+++.-....+..+.+..+=.+-.+. .-..++..+.+++.. ++.+...+|+.|..|. -.++.+...+..
T Consensus 156 ~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds-~H~~v~~~L~~lL~~--~~~L~~~iLdaLs~L~-Ls~~~l~~vr~~ 231 (1323)
T 3s4w_B 156 KDLTAQMMQLISVAPVNLQHDFITSLPEILGDS-QHANVGKELGELLVQ--NTSLTVPILDVFSSLR-LDPNFLSKIRQL 231 (1323)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGG-GHHHHHHHHHHHHHH--CSTTHHHHHHHHHHSC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcch-hhHHHHHHHHHHHhc--CcchHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 445555566665555566666666666554332 223577778888754 5578888899998884 467777776666
Q ss_pred heecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 002905 321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVV 361 (867)
Q Consensus 321 il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~ 361 (867)
++..|.+-+.+.==-.+..++.-++..|+.++|..|++.|.
T Consensus 232 vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~ 272 (1323)
T 3s4w_B 232 VMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLN 272 (1323)
T ss_dssp HHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcC
Confidence 77777666655555667788888899999999999997664
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.22 E-value=93 Score=31.48 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh
Q 002905 255 STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (867)
Q Consensus 255 s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~ 309 (867)
+-+..++.+..+-.=...| +.++..+.+.+ +++++|+.+.+|..|..+.++
T Consensus 25 dw~~ileicD~I~~~~~~~---k~a~ral~krl-~~~n~~v~l~aL~LLe~~vkN 75 (226)
T 3zyq_A 25 DWESILQICDLIRQGDTQA---KYAVNSIKKKV-NDKNPHVALYALEVMESVVKN 75 (226)
T ss_dssp CHHHHHHHHHHHHTTSSCH---HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCccH---HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHh
Confidence 4455555555544322222 44555555555 477888888888888777654
No 146
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=51.15 E-value=3.1e+02 Score=30.97 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHHHHHHHHcc---------CCCHHHHHHHHHHHHHHHhhChh---hHHH--HHHhheecccCCCHHHHHHHHHHHhcc
Q 002905 279 AANTYSQLLLS---------QSDNNVKLIVLDRLNELRSSHRD---IMVD--LIMDVLRALNSPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 279 aa~~li~ll~~---------~sD~Nvk~ivL~~L~~L~~~~p~---~l~~--~~~~il~~L~d~d~~IR~kaLelL~~L 343 (867)
+.+.++++|-+ ++|+.+-.++..=+.++.+.+|. +++. -...++++++++|+.||..||..+.++
T Consensus 396 llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 396 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45666777743 45788999999999999998885 3333 234466778999999999999887764
No 147
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=47.37 E-value=3.1e+02 Score=33.12 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCCcc
Q 002905 393 ASTVVHLLMDFLGDSNVA 410 (867)
Q Consensus 393 a~~~v~~Ll~lL~~~~~~ 410 (867)
.-|++.+|-.++..+++.
T Consensus 633 L~w~l~iL~~~v~~~g~~ 650 (799)
T 1vsy_4 633 LVLYLTALNDVLRNCHES 650 (799)
T ss_dssp HHHHHHHHHHHHTTTGGG
T ss_pred HHHHHHHHHHHHhcCcHH
Confidence 359999999999988864
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.29 E-value=95 Score=31.15 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccc-CCCHHHHHHHHHHHhc
Q 002905 277 RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALN-SPNLDIRRKTLDIVLE 342 (867)
Q Consensus 277 k~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~------~~~~~il~~L~-d~d~~IR~kaLelL~~ 342 (867)
+.++..+.+.| +++++++.+.+|..|..+..+-...|. ++...+.+++. ..+..||.++|+++..
T Consensus 41 k~a~r~l~krl-~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 41 KNAFAAIKKKM-NSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34555555555 467778888888777777654222221 12222222232 3467788888777653
No 149
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=45.41 E-value=2.5e+02 Score=33.76 Aligned_cols=183 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred CcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchH
Q 002905 15 TPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM 94 (867)
Q Consensus 15 ~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em 94 (867)
+..+...|.+.|..-+...|...+.-+..+...|+--...++.+++++..-+++..-.-+.-.+..+... + +.++.-+
T Consensus 489 d~~~~~~l~~~l~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~~~~-~-~~~~~~~ 566 (780)
T 1z5h_A 489 DDATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRML-T-HAFDDDA 566 (780)
T ss_dssp CHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCCCHHHHHHHHHHHHHHHTT-C-STTHHHH
T ss_pred CHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhc-h-HHHHHHH
Q ss_pred HHHHHHHHHhc----CCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc
Q 002905 95 ILICQNLRNNL----QHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (867)
Q Consensus 95 iLv~NsL~KDL----~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d 170 (867)
.-....+-+.| .|.....|..+++.+|+.+.++.++ ...-.... ..-+|.+|..+..+..+-.. .
T Consensus 567 ~~l~~~~~~~l~~~~~~~~~~~r~~~~~~a~~~~~~~~~~-a~~~f~~~-~~i~~~lr~~v~~~~~~~g~--~------- 635 (780)
T 1z5h_A 567 RAFCRSRMQFLTGKQDENLKIALGRVSRLYVMVDESYAEE-MSKLFKDF-DSAEPEMRSSIATAYALVTG--D------- 635 (780)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHTTGGGG-GGSCHHHHHHHHHHHHHHTC--C-------
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhc-CCCCHHHHHHHHHHHHHcCc--H-------
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHh
Q 002905 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHV 211 (867)
Q Consensus 171 ~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l 211 (867)
+..+.+.+. .+.++.-+..++.+|........++.+....
T Consensus 636 ~~~l~~~~~-~~~~~~~~~~~l~al~~~~~~~~~~~~l~~~ 675 (780)
T 1z5h_A 636 LKGLLEKFR-SVDRDEDRVRIISAFGKLKSNTDLSTVYGMV 675 (780)
T ss_dssp HHHHHHHHH-SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHhccCCCHHHHHHHHHHH
No 150
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=43.84 E-value=1e+02 Score=29.33 Aligned_cols=87 Identities=9% Similarity=0.159 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHh-heecccC
Q 002905 255 STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMD-VLRALNS 327 (867)
Q Consensus 255 s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~------~~~~~-il~~L~d 327 (867)
+-+...|.+..+-.= +..-+.++..+.+.+....++++.+.+|..|..+.++-...|. ++..+ +.+++++
T Consensus 33 Dw~~ileicD~In~~---~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~ 109 (152)
T 3rru_A 33 DWGQFMHICDIINTT---QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNP 109 (152)
T ss_dssp CHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSG
T ss_pred cHHHHHHHHHHHhCC---CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcC
Confidence 334555555444332 1234556666666665345677788888888777764332221 23333 4445543
Q ss_pred ---CCHHHHHHHHHHHhccC
Q 002905 328 ---PNLDIRRKTLDIVLELI 344 (867)
Q Consensus 328 ---~d~~IR~kaLelL~~Lv 344 (867)
.+..||.|.|+++....
T Consensus 110 ~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 110 RYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp GGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 34579999999988654
No 151
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=40.96 E-value=5.5e+02 Score=30.91 Aligned_cols=250 Identities=12% Similarity=0.110 Sum_probs=125.5
Q ss_pred HHHHHHHhcchh---hHHHHHHHHhhhc------CccchHHHHHHHHHHH--------Hhhhc--------------Cch
Q 002905 190 NAFLMLFTCDQD---RAINYLLTHVDRV------SEWGELLQMVVLELIR--------KVCRT--------------NKG 238 (867)
Q Consensus 190 ~A~~~L~ei~~~---~al~~L~~~l~~i------~~~~p~lQ~~iL~ll~--------~~~~~--------------~p~ 238 (867)
-|-...+-++++ .+..+|.++++.+ +..|.| ...+-+++. |+.+. +++
T Consensus 253 ~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~W-t~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~ 331 (799)
T 1vsy_4 253 TVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFW-TKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSF 331 (799)
T ss_dssp HHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTT-HHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHH
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCcc-HHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHH
Confidence 333444455553 4677777777654 245666 233333333 32221 233
Q ss_pred hHHHHHHHHHH----HHcCCChHHHHHHHHH---HHhcCC-ChHH-HHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHH
Q 002905 239 EKGKYIKIIIS----LLNAPSTAVIYECAGT---LVSLSS-APTA-IRAAANTYSQLLLS--QSDNNVKLIVLDRLNELR 307 (867)
Q Consensus 239 ~~~~li~~L~~----lL~s~s~aV~~eaa~t---L~~Ls~-~p~~-lk~aa~~li~ll~~--~sD~Nvk~ivL~~L~~L~ 307 (867)
.+..+++.+.+ -+.|.+..|.-.+..+ |..+.| +++. +..+...+-.-|-. -..++--..+|..|..+.
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 45666665554 4667777766444444 445554 2232 22233333333322 245665556677776655
Q ss_pred hh--ChhhHHHHHHhhe----ecccCCCHHHHHHHHHHHhccCC------CCcH------H----HHHHHHHHHHHHhhc
Q 002905 308 SS--HRDIMVDLIMDVL----RALNSPNLDIRRKTLDIVLELIT------PRNI------N----EVVLMLKKEVVKTQS 365 (867)
Q Consensus 308 ~~--~p~~l~~~~~~il----~~L~d~d~~IR~kaLelL~~Lv~------~~Nv------~----~IV~~L~kel~~~~~ 365 (867)
.- ....+..|+..++ ..++..|+.=-..++..+..+++ -.+. + +.++.-..++.....
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 31 1112233444444 44666777666667777665332 1111 1 112221222221100
Q ss_pred C-CccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHH-HHHHHHHH-hCcccHHHHHHHHHHHhc
Q 002905 366 G-ELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVI-IFVREIIE-MNPKLRVSIITRLLDNFY 442 (867)
Q Consensus 366 ~-~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi-~~l~~ii~-~~p~lr~~il~~L~~~L~ 442 (867)
. ..+.+.+. ..+.++.....|++....+++-++.++..+.+......+ ..+.-+.. -.|++...+++++.+.+.
T Consensus 492 ~~~~~~d~~~---~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 492 SKTFRVDDEL---LNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFW 568 (799)
T ss_dssp SSSCCCCTTH---HHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0 00111111 244556666778888888999999999864433222333 23333333 478888999999999765
Q ss_pred c
Q 002905 443 Q 443 (867)
Q Consensus 443 ~ 443 (867)
+
T Consensus 569 ~ 569 (799)
T 1vsy_4 569 S 569 (799)
T ss_dssp S
T ss_pred H
Confidence 4
No 152
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=40.63 E-value=1.4e+02 Score=37.04 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHhheecccCCC-HHHHHHHHHHHhcc--CC
Q 002905 274 TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM-----VDLIMDVLRALNSPN-LDIRRKTLDIVLEL--IT 345 (867)
Q Consensus 274 ~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l-----~~~~~~il~~L~d~d-~~IR~kaLelL~~L--v~ 345 (867)
+.+..+...+.+....++.. .|..+|.-+..+.-+|--.+ ......++.+|.|+. .+||..|-..|..| |.
T Consensus 797 ~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 797 NHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 34444444443333334566 99999998877664322111 233444667899999 99999999999888 44
Q ss_pred -C-CcHHHHHHHHHHHHHH--hhcC---CccCCHHHHHHHHHHHHHhHccCCcc---HHHHHHHHHHHHcC
Q 002905 346 -P-RNINEVVLMLKKEVVK--TQSG---ELEKNGEYRQMLIQAIHSCAIKFPEV---ASTVVHLLMDFLGD 406 (867)
Q Consensus 346 -~-~Nv~~IV~~L~kel~~--~~~~---~~d~d~e~r~~lI~aI~~la~kf~~~---a~~~v~~Ll~lL~~ 406 (867)
. ..+++++..+.+-+.+ .... ...++.--|...|-+++.|..-||-. .+|+=++|..+-..
T Consensus 876 ~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~ 946 (997)
T 1vsy_5 876 KEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSW 946 (997)
T ss_dssp CSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTT
T ss_pred CchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHH
Confidence 3 3445555544332211 0000 00001135667777888888888855 45777766555433
No 153
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=40.32 E-value=4.4e+02 Score=29.53 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc
Q 002905 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
..+-.+..++.+.+|.=|-..-..+.+||. +...+.
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~--Kf~~~R 197 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYG--KFLGLR 197 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHH--SCTTTH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHH--HHHHHH
Confidence 356667778888999999888888999998 665554
No 154
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=39.23 E-value=69 Score=29.32 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHhcccc
Q 002905 376 QMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN-----PKLRVSIITRLLDNFYQIR 445 (867)
Q Consensus 376 ~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~-----p~lr~~il~~L~~~L~~i~ 445 (867)
+..|+++...+..+...++.+++.+.+.+......-.-..+..+-+|+++. +..+..+-..|.+.+..+.
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~ 95 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVK 95 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhC
Confidence 467778888777778888899999999888776555555666677777642 2333444444455555443
No 155
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=38.65 E-value=4.3e+02 Score=31.09 Aligned_cols=124 Identities=16% Similarity=0.073 Sum_probs=86.0
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHH
Q 002905 335 KTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAID 414 (867)
Q Consensus 335 kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~e 414 (867)
++|.--....+.+....+|..+.+ +.+.. ..+..|...-++-|+.++...|.....|+..|+.-+..... ....
T Consensus 120 ~aLs~~Vs~Ld~~~~~~LV~aIL~-~~~W~----~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~-~~~~ 193 (649)
T 3tj1_A 120 DILSSNINRIESSRGTFLIQSIIN-FEKWW----ELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIK-QTVC 193 (649)
T ss_dssp HHHHHTGGGGCSGGGHHHHHHHHT-CTTGG----GSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHH-HHHH
T ss_pred HHHHhhhhhcCchhHHHHHHHHhC-Cchhc----cCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCc-ccHH
Confidence 333333445555666777776652 10111 34678999999999999888888888888888887764322 2223
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHhcccchH-----hHHHHHhhHhhccCCCCC
Q 002905 415 VIIFVREIIEMNPKLRVSIITRLLDNFYQIRAA-----RVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 415 vi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~-----~v~~~alWiLGEY~~~~~ 465 (867)
+=..++.|++..|.....+...|...|+..+.+ .-.+.++|+.+ |+....
T Consensus 194 ~H~~L~~Il~lvP~s~~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~-Y~PeL~ 248 (649)
T 3tj1_A 194 HHDMLKYFLRMIPSSMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRG-YCSELG 248 (649)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHH-HCGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHh-hchHHH
Confidence 557899999999998888888888889876543 23788888885 876543
No 156
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=37.14 E-value=3e+02 Score=34.19 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHcc---CCC-HHHHH----HHHHHHHHHHhhC
Q 002905 240 KGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLS---QSD-NNVKL----IVLDRLNELRSSH 310 (867)
Q Consensus 240 ~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk~aa~~li~ll~~---~sD-~Nvk~----ivL~~L~~L~~~~ 310 (867)
...++.-|.++-.|..+.|+..|-.+|.+... -+.....+...+++.|-. +.| ..+|= +....+.....++
T Consensus 131 ~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d 210 (997)
T 1vsy_5 131 ENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTD 210 (997)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcC
Confidence 34566666666677777888888888877532 233344455556665533 333 22221 2222444555678
Q ss_pred hhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC----CC------------------cHHHHHHHHHHHHHHhhcCCc
Q 002905 311 RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT----PR------------------NINEVVLMLKKEVVKTQSGEL 368 (867)
Q Consensus 311 p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~----~~------------------Nv~~IV~~L~kel~~~~~~~~ 368 (867)
...+.+....+++|...+.++|.+.+-.+...+.+ +. .+..-++.......+-.
T Consensus 211 ~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r---- 286 (997)
T 1vsy_5 211 YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR---- 286 (997)
T ss_dssp HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH----
T ss_pred hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH----
Confidence 88999999999999888888888877766543332 11 11111221111000000
Q ss_pred cCCHHHHHHHHHHHHHhHccCCc----cHHHHHHHHHHHHcCCCcccHHHHH-HHHHHHHHhCcccHHHHHHHHHHHhcc
Q 002905 369 EKNGEYRQMLIQAIHSCAIKFPE----VASTVVHLLMDFLGDSNVASAIDVI-IFVREIIEMNPKLRVSIITRLLDNFYQ 443 (867)
Q Consensus 369 d~d~e~r~~lI~aI~~la~kf~~----~a~~~v~~Ll~lL~~~~~~v~~evi-~~l~~ii~~~p~lr~~il~~L~~~L~~ 443 (867)
+.-.+....+...+..++..-.. ....+...|+.++.........+++ .+++.++..+|.+|..++..+...+..
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 00001112333333344311111 1223344445655555455566666 467777788999999988888888776
Q ss_pred cch
Q 002905 444 IRA 446 (867)
Q Consensus 444 i~~ 446 (867)
++.
T Consensus 367 ~k~ 369 (997)
T 1vsy_5 367 IIS 369 (997)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 157
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=36.80 E-value=2.6e+02 Score=26.35 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcC------------CchhhHHHHHHHHHHhcC------CCChHHHHHHHHHHH
Q 002905 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRL------------NETEIIEPLIPSVLQNLQ------HRHPYIRRNAILAVM 156 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I------------~~~el~e~L~~~V~~~L~------d~~pyVRK~A~lal~ 156 (867)
--++-+|+|-|+|+||.+.-.||..|-.+ .+.+++ ..+++.+. ..++-||.+....+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl----~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFL----NELIKVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHH----HHHHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHH----HHHHHHHcccccCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998866443 344444 44455554 357889999888777
Q ss_pred Hhhc
Q 002905 157 AIYK 160 (867)
Q Consensus 157 kI~~ 160 (867)
.-..
T Consensus 123 ~W~~ 126 (149)
T 3g2s_A 123 SWTV 126 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 158
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=36.55 E-value=2.8e+02 Score=27.44 Aligned_cols=127 Identities=10% Similarity=0.080 Sum_probs=71.2
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc----CCccHHHHHHHHHHHHcCC
Q 002905 332 IRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK----FPEVASTVVHLLMDFLGDS 407 (867)
Q Consensus 332 IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k----f~~~a~~~v~~Ll~lL~~~ 407 (867)
.|+.||+-+- +..-+..+++.+...+....... -.|...-..+++.+..+..+ ..+-....++.++.++-..
T Consensus 24 ~r~~aL~sL~---~D~gL~~LlPyf~~fI~~~v~~n-l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k 99 (196)
T 4atg_A 24 MKDIAIECLE---KESGLQQLVPYFIQHISELILKS-FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGK 99 (196)
T ss_dssp THHHHHHHHH---HCSSCTTTHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHh---cCCChhhhHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhc
Confidence 3555554443 33444444544444333322111 12334334444444443322 1223345555555554221
Q ss_pred ---CcccHHHHHHHHHHHHHh----CcccHHHHHHHHHHHhcc-cchHhHHHHHhhHhhccCC
Q 002905 408 ---NVASAIDVIIFVREIIEM----NPKLRVSIITRLLDNFYQ-IRAARVCTCALWIIGEYCQ 462 (867)
Q Consensus 408 ---~~~v~~evi~~l~~ii~~----~p~lr~~il~~L~~~L~~-i~~~~v~~~alWiLGEY~~ 462 (867)
....++.+...+..++++ +|.++.+++..|...|-+ -+.....=+|+|.+++.|.
T Consensus 100 ~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 100 SIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 124667777778877775 688899999999998855 3556678899999998876
No 159
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=36.52 E-value=4.4e+02 Score=28.42 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc-------cccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh
Q 002905 130 EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ-------LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR 202 (867)
Q Consensus 130 e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~-------li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~ 202 (867)
+.++..+..+|..=.---||.++.....+.+ ..+. .+..-++++..++..=.++.+..++=.+|.+|....
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr--~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILR--RQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHT--CCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHh--cccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhH
Confidence 3455667778877788889998888777776 3321 111124555554433334555555666777776554
Q ss_pred HH-HHHH------HHhhhc--CccchHHHHHHHHHHHHhhhcCch--------hHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002905 203 AI-NYLL------THVDRV--SEWGELLQMVVLELIRKVCRTNKG--------EKGKYIKIIISLLNAPSTAVIYECAGT 265 (867)
Q Consensus 203 al-~~L~------~~l~~i--~~~~p~lQ~~iL~ll~~~~~~~p~--------~~~~li~~L~~lL~s~s~aV~~eaa~t 265 (867)
++ .++. ..++-+ +.++ ...-+...++.+-...+. .-..+...+..+|+|.|...+.++.+.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~Fd--iasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFD--IASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHH--HHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCch--HHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 43 2222 111111 1111 011122222222111111 123455566667777777777777777
Q ss_pred HHhc
Q 002905 266 LVSL 269 (867)
Q Consensus 266 L~~L 269 (867)
|..+
T Consensus 233 Lgel 236 (341)
T 1upk_A 233 LGEL 236 (341)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 160
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=34.82 E-value=1.6e+02 Score=31.27 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHhhcCCchhhHHHHHH--------HHHHhcCCCChHHHHHHHHHHHHhhccCC----
Q 002905 97 ICQNLRNNLQHP-NEYIRGVTLRFLCRLNETEIIEPLIP--------SVLQNLQHRHPYIRRNAILAVMAIYKLPQ---- 163 (867)
Q Consensus 97 v~NsL~KDL~~p-Ne~IRglALr~Ls~I~~~el~e~L~~--------~V~~~L~d~~pyVRK~A~lal~kI~~l~~---- 163 (867)
+++.+.+-+.++ +|+.+-++||++|++-.......++- .+..++.+.+..+|-.++-.++.+-- .
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv--~~~~~ 225 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV--CFHKD 225 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH--HHHHS
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH--HHhhc
Q ss_pred -CcccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002905 164 -GEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 164 -~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
..+........+..++..++|+.+..-++.+|..+
T Consensus 226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
No 161
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=33.54 E-value=72 Score=29.82 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcC------------CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002905 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRL------------NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I------------~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
--++-+|+|-|+|+||.+.-.||..|-.+ .+.+.++. +++.+...++-||++....+.....
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e----l~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE----VSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH----HHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH----HHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56779999999999999988888766543 23444444 4444445788999998877766544
No 162
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.06 E-value=3.4e+02 Score=25.55 Aligned_cols=64 Identities=6% Similarity=0.076 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHhhc------------CCchhhHHHHHHHHHHhcC---CCChHHHHHHHHHHHH
Q 002905 94 MILICQNLRNNLQH-PNEYIRGVTLRFLCR------------LNETEIIEPLIPSVLQNLQ---HRHPYIRRNAILAVMA 157 (867)
Q Consensus 94 miLv~NsL~KDL~~-pNe~IRglALr~Ls~------------I~~~el~e~L~~~V~~~L~---d~~pyVRK~A~lal~k 157 (867)
.--++-+|+|-|+| +|+.+.-.||..|-. +.+.+.++.+ +.+.+. +++.-||+++...+..
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~---Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV---LVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH---THHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH---HHHHhccCCCCcHHHHHHHHHHHHH
Confidence 35688899999985 899988888877653 2333343331 334442 3456899988877766
Q ss_pred hhc
Q 002905 158 IYK 160 (867)
Q Consensus 158 I~~ 160 (867)
-..
T Consensus 128 W~~ 130 (157)
T 1elk_A 128 WAD 130 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 163
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=27.37 E-value=1.1e+02 Score=28.87 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCC----c---hhh-HHHHHHHHHHhcCC------CChHHHHHHHHHHHHhhc
Q 002905 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLN----E---TEI-IEPLIPSVLQNLQH------RHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I~----~---~el-~e~L~~~V~~~L~d------~~pyVRK~A~lal~kI~~ 160 (867)
--++-+|+|-|+|+||.+.-.||..|-.+. . .++ -..++..+++.+.. .++-||+++...+..-..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998775432 1 111 13345556666643 478899988877766655
No 164
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.68 E-value=1.3e+02 Score=30.05 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhc------------CCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002905 95 ILICQNLRNNLQHPNEYIRGVTLRFLCR------------LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~------------I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
--++-+|+|-|+|+||.+.-.||..|-. +.+.++++.|..-+.+ ..++-||+++..-+..-..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999977654 3345555555443332 4678999988766655443
No 165
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=26.56 E-value=3.9e+02 Score=24.81 Aligned_cols=73 Identities=26% Similarity=0.273 Sum_probs=50.4
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHH
Q 002905 115 VTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLM 194 (867)
Q Consensus 115 lALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~ 194 (867)
.|++.|+.+.-+++ .+++|.+..-|.|.|--|-+..+--+.++. + .+.+.|.+.| .+.|..-+...+..
T Consensus 16 ~a~~~L~~~~~~~i-~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----~----~l~p~I~~vl-~s~D~~W~ywil~~ 84 (134)
T 3ut4_A 16 STIDQLCKLIDNEI-EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----S----IAMPHILTIL-QGNDIMWKYWVIKL 84 (134)
T ss_dssp TTHHHHTTCCHHHH-HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----H----HHHHHHHHHH-HSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHcc-----H----hhHHHHHHHH-HcCChHHHHHHHHH
Confidence 36777888866554 778899999999999888777665555432 2 2334555655 78888888877766
Q ss_pred HHhc
Q 002905 195 LFTC 198 (867)
Q Consensus 195 L~ei 198 (867)
+..-
T Consensus 85 lv~~ 88 (134)
T 3ut4_A 85 MIPY 88 (134)
T ss_dssp HGGG
T ss_pred HHHc
Confidence 5533
No 166
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.52 E-value=5.2e+02 Score=25.83 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcC------------CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002905 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRL------------NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I------------~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
.--++-+|+|-|+|+||.+.-.||..|-.+ .+.+.++.|..-+. ...++-||++++..+.....
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~---~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK---RQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999876553 45555555544332 24678999998877766544
No 167
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=25.39 E-value=7.1e+02 Score=27.39 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=57.7
Q ss_pred HhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHH--HHhHccCCccHHHHHHHHHHHHcC-C----CcccH
Q 002905 340 VLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAI--HSCAIKFPEVASTVVHLLMDFLGD-S----NVASA 412 (867)
Q Consensus 340 L~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI--~~la~kf~~~a~~~v~~Ll~lL~~-~----~~~v~ 412 (867)
++..+.+.....+..-|.+.+.++.++ ....+...++.-. ..+...+.+....+++.+..-|.. . +..+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S---~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~ 354 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSS---PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIH 354 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTC---SCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 334445555555565566666665542 1222222222111 001111123445666666665532 2 24555
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhH
Q 002905 413 IDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWI 456 (867)
Q Consensus 413 ~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWi 456 (867)
.-+..+++-+++.+|++...+..+.-+.-..-+.....|...|-
T Consensus 355 ~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 398 (403)
T 3fga_B 355 GLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV 398 (403)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888766666555433322334456666674
No 168
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.87 E-value=1.5e+02 Score=27.76 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=33.1
Q ss_pred hhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 002905 312 DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKK 358 (867)
Q Consensus 312 ~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~k 358 (867)
+.+.+....+++.|++.++.++.|+|.+|-.|+...+ +.++..+++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~ 90 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQR 90 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHH
Confidence 4445555556777888899999999999998886665 555555543
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=21.97 E-value=6.8e+02 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCc--hhhHHH
Q 002905 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEIIEP 131 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~~--~el~e~ 131 (867)
+..+..||.+|+. |..||.-||+-++ |+++..
T Consensus 5 i~qli~~L~~p~~--Re~AL~eLsk~Re~~~~La~~ 38 (268)
T 2fv2_A 5 IYQWINELSSPET--RENALLELSKKRESVPDLAPM 38 (268)
T ss_dssp HHHHHHHTSSTTT--HHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHhcCchh--HHHHHHHHHHhhhccccHHHH
Confidence 3566688988764 9999999999776 554443
No 170
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=20.04 E-value=62 Score=29.87 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=33.5
Q ss_pred cccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEec
Q 002905 752 KETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSST 796 (867)
Q Consensus 752 ~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~st 796 (867)
.+||.|+.+ ++...||.+ +.-.|-++.+++..+++++||=..+
T Consensus 4 ~~~~~n~~~-~~~~pDL~V-~is~P~~v~~G~~~ti~vtV~N~G~ 46 (127)
T 3idu_A 4 YDKLSNLAT-TFEFPDLTV-EIKGPDVVGVNKLAEYEVHVKNLGG 46 (127)
T ss_dssp CBTTBCC---CCSSCCEEE-EEESCSEECTTCCEEEEEEEEECSS
T ss_pred ccceeeEee-eccCCCeEE-EecCCCcccCCCEEEEEEEEEECCC
Confidence 578999988 589999988 5557778999999999999885443
Done!