Query 002906
Match_columns 867
No_of_seqs 341 out of 452
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 13:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07173 DUF1399: Protein of u 100.0 4E-35 8.8E-40 283.3 8.5 135 99-243 1-136 (136)
2 PF07173 DUF1399: Protein of u 99.8 1.3E-20 2.7E-25 182.8 6.0 81 16-103 56-136 (136)
3 COG4278 Uncharacterized conser 98.8 5.6E-09 1.2E-13 108.7 7.9 90 190-283 56-145 (269)
4 TIGR03601 B_an_ocin probable h 98.1 2.1E-06 4.4E-11 74.9 3.0 9 730-738 40-48 (79)
5 TIGR03601 B_an_ocin probable h 97.9 7.7E-06 1.7E-10 71.4 2.9 8 732-739 45-52 (79)
6 PRK10737 FKBP-type peptidyl-pr 97.9 6.5E-06 1.4E-10 85.2 2.7 65 564-632 15-85 (196)
7 COG1047 SlpA FKBP-type peptidy 97.7 1.8E-05 4E-10 80.4 3.1 67 564-634 15-88 (174)
8 cd04042 C2A_MCTP_PRT C2 domain 97.3 0.0039 8.5E-08 58.4 12.3 119 334-464 1-121 (121)
9 cd08678 C2_C21orf25-like C2 do 97.2 0.0058 1.3E-07 57.9 12.6 123 336-469 2-126 (126)
10 cd04013 C2_SynGAP_like C2 doma 97.2 0.0049 1.1E-07 61.4 11.8 126 330-466 8-142 (146)
11 cd08400 C2_Ras_p21A1 C2 domain 97.0 0.0089 1.9E-07 57.0 11.9 119 333-464 4-124 (126)
12 PRK15095 FKBP-type peptidyl-pr 96.8 0.00061 1.3E-08 68.2 1.9 63 568-633 20-89 (156)
13 cd08682 C2_Rab11-FIP_classI C2 96.4 0.031 6.8E-07 52.8 10.4 104 335-447 1-112 (126)
14 cd04015 C2_plant_PLD C2 domain 96.3 0.051 1.1E-06 54.3 12.2 78 377-463 80-158 (158)
15 cd08373 C2A_Ferlin C2 domain f 96.1 0.073 1.6E-06 50.3 11.5 115 339-467 2-120 (127)
16 cd04043 C2_Munc13_fungal C2 do 96.0 0.093 2E-06 49.2 11.6 103 337-445 5-111 (126)
17 cd04019 C2C_MCTP_PRT_plant C2 96.0 0.079 1.7E-06 52.6 11.6 121 335-464 2-133 (150)
18 cd04050 C2B_Synaptotagmin-like 95.9 0.064 1.4E-06 49.2 9.6 99 335-445 2-103 (105)
19 cd08681 C2_fungal_Inn1p-like C 95.7 0.099 2.2E-06 48.5 10.5 99 335-446 3-106 (118)
20 cd04016 C2_Tollip C2 domain pr 95.5 0.13 2.8E-06 49.6 10.7 113 336-461 5-120 (121)
21 cd08688 C2_KIAA0528-like C2 do 95.5 0.075 1.6E-06 49.3 8.6 100 336-444 2-109 (110)
22 cd08382 C2_Smurf-like C2 domai 95.4 0.22 4.7E-06 47.2 11.7 107 334-448 1-109 (123)
23 cd04033 C2_NEDD4_NEDD4L C2 dom 95.3 0.23 5.1E-06 47.0 11.4 121 336-462 3-132 (133)
24 cd08385 C2A_Synaptotagmin-1-5- 95.3 0.13 2.8E-06 48.3 9.5 101 335-443 18-123 (124)
25 cd08376 C2B_MCTP_PRT C2 domain 95.2 0.35 7.7E-06 44.7 12.1 100 337-447 4-106 (116)
26 cd08378 C2B_MCTP_PRT_plant C2 95.0 0.22 4.7E-06 47.4 10.3 100 335-447 2-106 (121)
27 cd04024 C2A_Synaptotagmin-like 95.0 0.32 6.9E-06 45.5 11.2 104 336-447 4-112 (128)
28 cd04014 C2_PKC_epsilon C2 doma 94.9 0.27 5.8E-06 46.9 10.7 103 335-445 6-119 (132)
29 cd04022 C2A_MCTP_PRT_plant C2 94.8 0.35 7.5E-06 45.8 11.1 119 335-463 2-126 (127)
30 cd08387 C2A_Synaptotagmin-8 C2 94.8 0.26 5.7E-06 46.3 10.2 101 335-443 18-123 (124)
31 cd04011 C2B_Ferlin C2 domain s 94.7 0.27 5.8E-06 45.5 9.8 99 334-444 5-110 (111)
32 cd04044 C2A_Tricalbin-like C2 94.4 0.46 1E-05 44.1 10.8 118 335-464 4-124 (124)
33 cd04036 C2_cPLA2 C2 domain pre 94.4 0.69 1.5E-05 43.2 12.0 101 336-445 3-106 (119)
34 cd08379 C2D_MCTP_PRT_plant C2 94.2 0.57 1.2E-05 45.5 11.2 117 336-458 3-125 (126)
35 cd08394 C2A_Munc13 C2 domain f 94.1 0.28 6.1E-06 48.2 8.9 98 335-445 4-102 (127)
36 cd04029 C2A_SLP-4_5 C2 domain 94.1 0.37 8.1E-06 46.0 9.6 101 335-443 17-125 (125)
37 cd04031 C2A_RIM1alpha C2 domai 94.0 0.43 9.3E-06 44.5 9.7 99 335-442 18-124 (125)
38 cd08386 C2A_Synaptotagmin-7 C2 93.9 0.39 8.5E-06 45.0 9.4 102 335-444 18-125 (125)
39 cd08391 C2A_C2C_Synaptotagmin_ 93.9 0.62 1.3E-05 43.0 10.5 99 335-445 3-110 (121)
40 cd08409 C2B_Synaptotagmin-15 C 93.9 0.36 7.7E-06 46.9 9.2 101 335-441 17-135 (137)
41 cd04030 C2C_KIAA1228 C2 domain 93.8 0.43 9.3E-06 44.7 9.3 103 335-443 18-127 (127)
42 cd04040 C2D_Tricalbin-like C2 93.7 0.66 1.4E-05 42.8 10.2 103 336-448 2-107 (115)
43 cd04041 C2A_fungal C2 domain f 93.6 0.28 6E-06 45.6 7.6 99 335-444 3-108 (111)
44 cd08390 C2A_Synaptotagmin-15-1 93.6 0.66 1.4E-05 43.3 10.2 102 335-444 16-123 (123)
45 cd04051 C2_SRC2_like C2 domain 93.6 0.64 1.4E-05 43.7 10.1 103 336-446 3-116 (125)
46 cd08388 C2A_Synaptotagmin-4-11 93.5 0.77 1.7E-05 44.1 10.7 104 335-444 18-128 (128)
47 cd08675 C2B_RasGAP C2 domain s 93.5 0.57 1.2E-05 45.7 9.9 104 337-448 3-124 (137)
48 cd08393 C2A_SLP-1_2 C2 domain 93.5 0.53 1.1E-05 44.9 9.5 100 334-442 16-124 (125)
49 cd08389 C2A_Synaptotagmin-14_1 93.4 0.56 1.2E-05 44.7 9.6 101 335-444 18-124 (124)
50 cd04021 C2_E3_ubiquitin_ligase 93.4 0.59 1.3E-05 44.6 9.7 106 334-446 3-110 (125)
51 cd04045 C2C_Tricalbin-like C2 93.0 0.53 1.2E-05 44.7 8.7 101 336-447 4-106 (120)
52 cd04049 C2_putative_Elicitor-r 93.0 0.5 1.1E-05 44.4 8.4 100 335-446 3-110 (124)
53 cd00276 C2B_Synaptotagmin C2 d 92.7 0.24 5.2E-06 46.6 5.8 102 335-446 16-124 (134)
54 cd08383 C2A_RasGAP C2 domain ( 92.6 1.6 3.6E-05 40.1 11.1 112 335-462 2-117 (117)
55 cd04010 C2B_RasA3 C2 domain se 92.4 1.8 3.8E-05 43.2 11.7 104 335-446 2-124 (148)
56 cd08685 C2_RGS-like C2 domain 92.4 0.83 1.8E-05 43.5 9.0 100 335-442 14-119 (119)
57 cd08392 C2A_SLP-3 C2 domain fi 92.2 1.1 2.5E-05 43.2 9.9 102 335-442 17-127 (128)
58 cd08408 C2B_Synaptotagmin-14_1 91.9 1.1 2.3E-05 44.0 9.4 102 335-442 17-137 (138)
59 cd04026 C2_PKC_alpha_gamma C2 91.9 0.87 1.9E-05 43.2 8.6 102 335-445 15-122 (131)
60 cd04025 C2B_RasA1_RasA4 C2 dom 91.4 1.1 2.3E-05 42.1 8.6 100 336-446 3-105 (123)
61 cd08381 C2B_PI3K_class_II C2 d 91.4 1.3 2.8E-05 42.2 9.2 99 335-442 15-121 (122)
62 COG4278 Uncharacterized conser 91.4 0.62 1.3E-05 50.0 7.6 193 50-254 58-264 (269)
63 cd04028 C2B_RIM1alpha C2 domai 91.1 2.1 4.6E-05 42.8 10.6 105 335-447 31-141 (146)
64 cd08375 C2_Intersectin C2 doma 90.8 3.8 8.2E-05 40.0 12.0 116 333-462 15-135 (136)
65 cd04054 C2A_Rasal1_RasA4 C2 do 90.8 3.1 6.8E-05 39.3 11.1 102 335-446 2-106 (121)
66 cd00030 C2 C2 domain. The C2 d 90.8 1.3 2.9E-05 37.2 7.9 97 337-442 3-102 (102)
67 KOG0544 FKBP-type peptidyl-pro 90.7 0.27 5.8E-06 46.4 3.7 51 567-620 31-86 (108)
68 cd08377 C2C_MCTP_PRT C2 domain 90.0 2.8 6E-05 38.8 9.8 99 335-446 3-103 (119)
69 cd04035 C2A_Rabphilin_Doc2 C2 89.9 1.9 4.2E-05 40.4 8.9 90 335-430 17-114 (123)
70 cd08406 C2B_Synaptotagmin-12 C 89.9 1.9 4.1E-05 42.3 9.0 101 335-442 17-135 (136)
71 PLN03008 Phospholipase D delta 89.8 2.3 4.9E-05 53.1 11.4 89 378-475 100-189 (868)
72 cd04046 C2_Calpain C2 domain p 89.8 6.1 0.00013 37.6 12.1 116 335-464 5-123 (126)
73 cd08521 C2A_SLP C2 domain firs 89.7 2.2 4.7E-05 39.7 9.0 99 335-442 16-123 (123)
74 PLN02270 phospholipase D alpha 89.5 2 4.3E-05 53.4 10.6 89 378-475 71-160 (808)
75 cd04052 C2B_Tricalbin-like C2 89.5 0.96 2.1E-05 42.1 6.4 73 378-464 36-110 (111)
76 cd04047 C2B_Copine C2 domain s 89.5 1.9 4E-05 39.6 8.2 89 336-430 3-101 (110)
77 cd08402 C2B_Synaptotagmin-1 C2 89.3 2.2 4.7E-05 40.9 8.8 87 335-426 17-110 (136)
78 cd00275 C2_PLC_like C2 domain 88.8 9 0.0002 35.7 12.4 104 333-448 2-114 (128)
79 cd04017 C2D_Ferlin C2 domain f 88.8 5.7 0.00012 38.2 11.3 117 334-462 2-131 (135)
80 smart00239 C2 Protein kinase C 88.2 3.4 7.3E-05 35.3 8.5 90 336-431 3-96 (101)
81 cd08691 C2_NEDL1-like C2 domai 87.1 5.6 0.00012 39.2 10.3 105 337-445 5-122 (137)
82 cd08676 C2A_Munc13-like C2 dom 86.9 4.1 8.8E-05 41.0 9.3 101 327-442 24-153 (153)
83 cd04032 C2_Perforin C2 domain 86.1 4.9 0.00011 39.2 9.2 93 330-430 25-120 (127)
84 cd08405 C2B_Synaptotagmin-7 C2 85.6 5 0.00011 38.5 8.9 99 335-443 17-122 (136)
85 cd08395 C2C_Munc13 C2 domain t 85.5 8.1 0.00018 37.3 10.3 102 336-445 3-113 (120)
86 cd08384 C2B_Rabphilin_Doc2 C2 85.5 5.5 0.00012 37.9 9.1 101 335-445 15-122 (133)
87 cd04027 C2B_Munc13 C2 domain s 85.3 17 0.00036 34.7 12.3 104 334-446 2-114 (127)
88 PF00254 FKBP_C: FKBP-type pep 85.1 0.84 1.8E-05 40.9 3.2 49 569-620 21-74 (94)
89 cd04020 C2B_SLP_1-2-3-4 C2 dom 85.0 5.1 0.00011 40.3 9.0 102 335-444 29-138 (162)
90 TIGR03516 ppisom_GldI peptidyl 85.0 0.64 1.4E-05 47.8 2.7 50 568-620 101-154 (177)
91 cd08403 C2B_Synaptotagmin-3-5- 84.7 6.5 0.00014 37.6 9.2 101 335-445 16-123 (134)
92 cd08680 C2_Kibra C2 domain fou 84.4 5.6 0.00012 38.5 8.6 100 335-442 16-124 (124)
93 cd04038 C2_ArfGAP C2 domain pr 83.9 5.4 0.00012 39.6 8.6 89 335-431 4-93 (145)
94 PF00168 C2: C2 domain; Inter 82.5 7.7 0.00017 32.7 7.9 79 337-420 3-84 (85)
95 cd04018 C2C_Ferlin C2 domain t 82.5 4.8 0.0001 40.4 7.6 88 336-431 3-108 (151)
96 cd08401 C2A_RasA2_RasA3 C2 dom 82.4 24 0.00052 33.5 12.0 99 336-445 3-105 (121)
97 cd08404 C2B_Synaptotagmin-4 C2 81.9 11 0.00023 36.3 9.5 102 334-445 16-124 (136)
98 cd04009 C2B_Munc13-like C2 dom 80.6 9.3 0.0002 36.7 8.6 91 335-430 18-119 (133)
99 cd08690 C2_Freud-1 C2 domain f 80.5 17 0.00037 36.9 10.7 102 337-445 6-122 (155)
100 cd08407 C2B_Synaptotagmin-13 C 78.3 15 0.00031 36.4 9.2 101 335-442 17-137 (138)
101 cd04039 C2_PSD C2 domain prese 74.6 13 0.00028 34.8 7.5 89 335-431 3-99 (108)
102 cd04037 C2E_Ferlin C2 domain f 71.3 26 0.00057 33.3 8.8 89 335-429 2-93 (124)
103 PLN03200 cellulose synthase-in 70.6 20 0.00043 49.3 10.3 111 334-458 1981-2097(2102)
104 KOG0549 FKBP-type peptidyl-pro 69.7 7.9 0.00017 40.6 5.2 72 560-634 91-176 (188)
105 COG0545 FkpA FKBP-type peptidy 69.7 3.8 8.2E-05 43.5 2.9 52 567-621 130-184 (205)
106 PRK11570 peptidyl-prolyl cis-t 69.2 3.3 7.1E-05 43.7 2.4 50 568-620 132-184 (206)
107 cd04048 C2A_Copine C2 domain f 66.1 72 0.0016 29.9 10.5 104 339-446 6-116 (120)
108 cd08677 C2A_Synaptotagmin-13 C 63.0 47 0.001 32.5 8.7 97 334-442 15-118 (118)
109 cd08410 C2B_Synaptotagmin-17 C 58.1 73 0.0016 30.8 9.2 85 335-424 16-107 (135)
110 PLN02352 phospholipase D epsil 56.4 28 0.00061 43.5 7.4 87 378-477 56-144 (758)
111 cd08692 C2B_Tac2-N C2 domain s 49.3 85 0.0018 31.4 8.2 93 324-426 9-109 (135)
112 PF10358 NT-C2: N-terminal C2 47.9 2.6E+02 0.0057 26.8 12.8 119 333-464 7-136 (143)
113 PRK10902 FKBP-type peptidyl-pr 43.2 22 0.00048 39.2 3.4 50 568-620 176-228 (269)
114 KOG2059 Ras GTPase-activating 34.5 72 0.0016 39.7 6.0 117 333-468 5-130 (800)
115 KOG0552 FKBP-type peptidyl-pro 32.7 35 0.00075 37.0 2.8 49 569-620 152-205 (226)
116 KOG0921 Dosage compensation co 30.5 1.9E+02 0.0041 37.5 8.6 18 443-460 843-860 (1282)
117 PF11252 DUF3051: Protein of u 29.6 1.2E+02 0.0027 30.8 5.8 86 165-287 78-163 (189)
118 PF04885 Stig1: Stigma-specifi 28.2 46 0.00099 33.5 2.6 43 719-761 73-125 (136)
119 KOG0771 Prolactin regulatory e 27.6 1.9E+02 0.0042 33.9 7.7 85 564-654 287-385 (398)
120 PF08050 Tet_res_leader: Tetra 25.5 32 0.00068 24.0 0.6 16 847-862 4-19 (20)
121 KOG0921 Dosage compensation co 24.3 2.7E+02 0.0059 36.2 8.5 13 81-93 324-336 (1282)
122 PF12785 VESA1_N: Variant eryt 24.3 3.2E+02 0.007 32.6 8.7 99 730-849 81-208 (462)
123 PF01439 Metallothio_2: Metall 21.3 53 0.0011 30.0 1.4 6 784-789 11-16 (74)
No 1
>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=4e-35 Score=283.34 Aligned_cols=135 Identities=45% Similarity=0.845 Sum_probs=122.8
Q ss_pred hHHHHHHHHhCCcCCCCCcccccccc-hhhhhHHHhhhhCCCCccccccccccCcccccccccccchhhhhHHHHHHhhh
Q 002906 99 QYKSDCEELYGKNLDNSYVVSSIQGT-CRKETEEIWNRLYPEEPYELDLAKISSEDFSAELSGLEKFTKYDLVSAVKRQS 177 (867)
Q Consensus 99 ~Y~~dC~~~~Grvid~~~i~~~~~~~-~~~~t~~~W~~~yP~ePfdl~~~~~~~~~i~~~~~~~~~~is~DLVaAV~RQ~ 177 (867)
+|++||+++|||+|+++.+.+.+++. +..+++++|+.+||.|||++++..... .....++++||++||+||.
T Consensus 1 ~Y~~~C~~~~grii~~~~~~~~~~~~~a~~~~~~~w~~~~p~e~~~~~~~~~~~-------~~~~~~~~~DLv~av~Rq~ 73 (136)
T PF07173_consen 1 SYRKDCERRFGRIIDHPSISDSINEVYAKNRCRKIWQARYPREPFDLNLISMTV-------WSNGIPISYDLVAAVKRQS 73 (136)
T ss_pred ChHHHHHHHhchhcCCCchhHHHHHHHHHhhhHHHHHHhCCCchHhhhhhhccc-------ccccccchHHHHHHHHHHH
Confidence 59999999999999999999888876 899999999999999999987765443 1125678999999999999
Q ss_pred hHHHHhccccCCcHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhcccChhhHHHH
Q 002906 178 PFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKD 243 (867)
Q Consensus 178 sF~~qv~sP~~~d~~fL~rAi~RYkrFL~Lik~~p~~~~~~~LVPTlDIDLVWHTHQL~P~~Y~~D 243 (867)
.|+++|++|++.+..||.+|++||++||.|++.++++ .+||||+|||||||||||+|+.|++|
T Consensus 74 ~F~~~~~~p~~~~~~~l~~A~~RY~~Fl~l~~~~~~~---~~lVPtlDIdLvWHTHqL~p~~Y~~D 136 (136)
T PF07173_consen 74 SFVYKMSSPHLSETVFLERAIRRYKRFLDLLKKYPDK---SFLVPTLDIDLVWHTHQLNPVSYRED 136 (136)
T ss_pred HHHHHHccHhhcCcHHHHHHHHHHHHHHHHHHhCCCC---CCCCChHHHHHHHHHhccCchhccCC
Confidence 9999999999999999999999999999999999863 48999999999999999999999876
No 2
>PF07173 DUF1399: Protein of unknown function (DUF1399); InterPro: IPR009836 This family represents a conserved region approximately 150 residues long within a number of hypothetical plant proteins of unknown function.
Probab=99.81 E-value=1.3e-20 Score=182.77 Aligned_cols=81 Identities=44% Similarity=0.684 Sum_probs=74.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhccCCccChhHHHHHHHHHHHhcHHHHhhcccCcCCCcccccCcchhHHHhhhhc
Q 002906 16 AQEIEISVDDLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRL 95 (867)
Q Consensus 16 aq~i~is~D~LV~aa~Rql~FL~~vd~~~wL~sg~~L~~AI~RY~~~WlpLla~~~~~~~~~~~lvPPLDV~~VWH~H~L 95 (867)
+..++|++| ||+||+||..|+.+|+ .++++++.+|.+|+.||++ ||+|+++++.. ..+||||||+||||||||
T Consensus 56 ~~~~~~~~D-Lv~av~Rq~~F~~~~~-~p~~~~~~~l~~A~~RY~~-Fl~l~~~~~~~----~~lVPtlDIdLvWHTHqL 128 (136)
T PF07173_consen 56 SNGIPISYD-LVAAVKRQSSFVYKMS-SPHLSETVFLERAIRRYKR-FLDLLKKYPDK----SFLVPTLDIDLVWHTHQL 128 (136)
T ss_pred cccccchHH-HHHHHHHHHHHHHHHc-cHhhcCcHHHHHHHHHHHH-HHHHHHhCCCC----CCCCChHHHHHHHHHhcc
Confidence 458899999 9999999999999999 6789999999999999999 99999998652 579999999999999999
Q ss_pred ChhhHHHH
Q 002906 96 NPVQYKSD 103 (867)
Q Consensus 96 nP~~Y~~d 103 (867)
||..|.+|
T Consensus 129 ~p~~Y~~D 136 (136)
T PF07173_consen 129 NPVSYRED 136 (136)
T ss_pred CchhccCC
Confidence 99999875
No 3
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=5.6e-09 Score=108.73 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhcccChhhHHHHHHhHhCccccCCCcccccccccchhh
Q 002906 190 NDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEHDDMDQDRTKGKKLDT 269 (867)
Q Consensus 190 d~~fL~rAi~RYkrFL~Lik~~p~~~~~~~LVPTlDIDLVWHTHQL~P~~Y~~Dc~~i~Gr~IdHdD~i~~r~eg~kL~~ 269 (867)
+..+.++.+++|++|+.|....+. .+..|+-.||++||-|+||++.|.++|.+.+|+.+||+|....+.+.++.+.
T Consensus 56 s~e~a~qve~e~R~F~~L~iaagk----~v~tpS~~VD~~WH~lIlhTReye~fcs~vlg~plhh~p~l~~~~~nq~~~~ 131 (269)
T COG4278 56 SRELAEQVEKELRRFVLLTIAAGK----RVFTPSGVVDLYWHELILHTREYEKFCSSVLGIPLHHNPLLAKLLNNQDNSF 131 (269)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCc----cccChhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccChhhhcccCCCchhH
Confidence 456788999999999988777663 3678999999999999999999999999999999999999887777778889
Q ss_pred HHHHHHHHHHHHhC
Q 002906 270 GFSGTTKQWEETFG 283 (867)
Q Consensus 270 af~~T~~Lwe~~FG 283 (867)
++.+|.+.+...++
T Consensus 132 ~lr~tlk~~~r~e~ 145 (269)
T COG4278 132 GLRRTLKPACRNEG 145 (269)
T ss_pred HHHHhcchhhhccc
Confidence 99999998887775
No 4
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=98.09 E-value=2.1e-06 Score=74.91 Aligned_cols=9 Identities=78% Similarity=2.025 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 002906 730 SGCGGCGGG 738 (867)
Q Consensus 730 g~cgg~~~c 738 (867)
..|||||||
T Consensus 40 r~cggCGgc 48 (79)
T TIGR03601 40 RRCGGCGGG 48 (79)
T ss_pred hhccCCCCC
Confidence 334444444
No 5
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=97.89 E-value=7.7e-06 Score=71.40 Aligned_cols=8 Identities=63% Similarity=1.328 Sum_probs=4.2
Q ss_pred CCCCCCCC
Q 002906 732 CGGCGGGG 739 (867)
Q Consensus 732 cgg~~~c~ 739 (867)
|||||||+
T Consensus 45 CGgcggcg 52 (79)
T TIGR03601 45 CGGGGCCG 52 (79)
T ss_pred CCCCCCCC
Confidence 55555554
No 6
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.88 E-value=6.5e-06 Score=85.23 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=60.2
Q ss_pred ecCCCCCcceeec-CCcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce--eEEEeccCccEE
Q 002906 564 KKSSKEGHLFELL-GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA--IALLDLKSGVIK 632 (867)
Q Consensus 564 ~k~s~dg~l~El~-~~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea--~aLldL~ke~Fe 632 (867)
+++ ++|++||.+ ...|+.|+.|.+++ ||++ +.+++.|+.+ .|+++|++|||+| .+|+.+|+++|.
T Consensus 15 l~~-~dG~v~dst~~~~Pl~~~~G~g~lipglE~a-L~G~~~Gd~~--~v~l~peeAyGe~d~~lV~~vpr~~F~ 85 (196)
T PRK10737 15 VRT-EDGVLVDESPVSAPLDYLHGHGSLISGLETA-LEGHEVGDKF--DVAVGANDAYGQYDENLVQRVPKDVFM 85 (196)
T ss_pred EEe-CCCCEEEecCCCCCeEEEeCCCcchHHHHHH-HcCCCCCCEE--EEEEChHHhcCCCChHHEEEecHHHCC
Confidence 555 369999999 78999999999998 9999 9999999999 9999999999999 899999999995
No 7
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.8e-05 Score=80.45 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=61.3
Q ss_pred ecCCCCCcceeec-C-CcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce--eEEEeccCccEEEc
Q 002906 564 KKSSKEGHLFELL-G-NRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA--IALLDLKSGVIKVK 634 (867)
Q Consensus 564 ~k~s~dg~l~El~-~-~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea--~aLldL~ke~FeVd 634 (867)
.+..+ |.++|.+ . .+|+.|+.|.+++ ||++ +.+++.|++| .|+++||+|||+| ..++.+++..|.-.
T Consensus 15 ~~~~d-g~v~Dtt~e~~~P~~~i~G~g~li~glE~a-l~g~~~Ge~~--~V~IpPE~AfGe~~~~lvq~vp~~~F~~~ 88 (174)
T COG1047 15 LKVED-GEVVDTTDENYGPLTFIVGAGQLIPGLEEA-LLGKEVGEEF--TVEIPPEDAFGEYDPDLVQRVPRDEFQGV 88 (174)
T ss_pred EEecC-CcEEEcccccCCCeEEEecCCCcchhHHHH-HhCCCCCcee--EEEeCchHhcCCCChHHeEEecHHHhCcC
Confidence 66666 9999999 5 8899999999999 9999 9999999999 9999999999999 89999999998653
No 8
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=97.29 E-value=0.0039 Score=58.41 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=81.1
Q ss_pred EEEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-ecceEEEEEEeeCCCccccc
Q 002906 334 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~ 411 (867)
|+.|.|++++|||.... ...+-||++.-.+ ....+ ++.+.=+.+|-|++...|... +...|.||+.-+.. +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~k-T~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~-----~ 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYK-SKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDR-----G 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEE-eeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCC-----C
Confidence 56788999999986532 3467788887322 11111 111112346788877777665 46789999887653 4
Q ss_pred CCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeecC
Q 002906 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~Tp 464 (867)
.+...||.+.|++++|... -..+.|++|.+.++. ...=.|++.+++||
T Consensus 74 ~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 74 LTDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred CCCcceEEEEEEHHHcCCC---CCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 5678999999999999954 358899999766542 33448888888887
No 9
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=97.21 E-value=0.0058 Score=57.85 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=86.9
Q ss_pred EEEeeeccCCCccccCCCceEEEEeccCCCcccccccceee-eecccceeeEEEEeee-cceEEEEEEeeCCCcccccCC
Q 002906 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI-LSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 336 ~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~-~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~~~~~k~ 413 (867)
.|.+++++|||. .....+-||.+...++... .+.++.- +.++-|+....|.-.+ ...|.|++.-+.. +++
T Consensus 2 ~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~--~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~-----~~~ 73 (126)
T cd08678 2 LVKNIKANGLSE-AAGSSNPYCVLEMDEPPQK--YQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGK-----KSD 73 (126)
T ss_pred EEEEEEecCCCC-CCCCcCCEEEEEECCCCcE--EEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCC-----CCC
Confidence 567899999987 4445778888875322111 1222222 2467787777777654 5789999886654 347
Q ss_pred ccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeecCCCCCc
Q 002906 414 SKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAP 469 (867)
Q Consensus 414 sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~TpPv~Ap 469 (867)
.+.||.+.|++++++... ..+.||+|.++.+......=+|++.+.+++|.-+|
T Consensus 74 ~~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~~~ 126 (126)
T cd08678 74 SKFLGLAIVPFDELRKNP---SGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAELP 126 (126)
T ss_pred CceEEEEEEeHHHhccCC---ceeEEEEecCCCCCCCCcceEEEEEEEEeccccCC
Confidence 899999999999999653 34789999987654334455999999999998765
No 10
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=97.15 E-value=0.0049 Score=61.39 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=84.9
Q ss_pred ceEEEEEEEeeeccCCCccccCCCceEEEEeccCCCcccccccc-eeeeecccceeeEEEEeee-cceEEEEEEeeCCCc
Q 002906 330 LKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQK-LTILSKSGMKQVASFQCEA-TGELLFELVSHSTSK 407 (867)
Q Consensus 330 r~vvev~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~-~~~~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~ 407 (867)
|...-+.|.|+.+|+||.. .+.|+.+. .|.-.-+..+ +.=+..+-|..--+|+|-+ ...|.|.|..+....
T Consensus 8 R~~~sL~v~V~EAk~Lp~~----~~~Y~~i~---Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPK----KRYYCELC---LDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEEccCCCCc----CCceEEEE---ECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence 4555677889999999984 36899866 3322111111 1223456777777777764 578999996554322
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCC-------CCCCeeEEEEEeecCCC
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNV-------SSKPISLRIAVSFTIPT 466 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~-------~~~p~~lrv~~S~TpPv 466 (867)
..+.+..+||++.|+..++.. ...+|+||+|.+.++.. .....+|||-+-+++=.
T Consensus 81 -~~~~~~~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 -KKKDKSQLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred -ccccCCcEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 112367899999999999994 56799999998776553 23346899988887633
No 11
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=97.02 E-value=0.0089 Score=56.98 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=78.8
Q ss_pred EEEEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeeec--ceEEEEEEeeCCCcccc
Q 002906 333 VEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEAT--GELLFELVSHSTSKIPM 410 (867)
Q Consensus 333 vev~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~t--~~l~lel~~~~~~~~~~ 410 (867)
-.+.|.++.++|||... ..+-||.+.-.+. .. .+.++.=..+|-|.....|...+. ..|.|++.....
T Consensus 4 ~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~-~~--~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~----- 73 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH--VPHPYCVISLNEV-KV--ARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK----- 73 (126)
T ss_pred eEEEEEEEEeeCCCCCC--CCCeeEEEEECCE-eE--EEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCC-----
Confidence 34677889999999754 3678888763210 11 112222235677886666665432 467777655432
Q ss_pred cCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeecC
Q 002906 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (867)
Q Consensus 411 ~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~Tp 464 (867)
+.+...||.++|++.++... -.++.|++|.+.+.....+.=.||+.+++++
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~---~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNG---QETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCeEEEEEEEHhHccCC---CcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 45788999999999998864 3479999998875433344458888888875
No 12
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=96.78 E-value=0.00061 Score=68.25 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=57.1
Q ss_pred CCCcceeec-C-CcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce--eEEEeccCccEEE
Q 002906 568 KEGHLFELL-G-NRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA--IALLDLKSGVIKV 633 (867)
Q Consensus 568 ~dg~l~El~-~-~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea--~aLldL~ke~FeV 633 (867)
.+|.+||.+ + +.|+.|+.|.+.+ ||.. +.++..|+.+ .|.++|+++||++ ..++.++++.|.-
T Consensus 20 ~dG~v~dst~~~~~P~~f~~G~g~vi~gle~a-L~gm~~Ge~~--~v~ipp~~ayG~~d~~~v~~vp~~~f~~ 89 (156)
T PRK15095 20 DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQ-LLGLKVGDKK--TFSLEPEAAFGVPSPDLIQYFSRRDFMD 89 (156)
T ss_pred CCCCEEEECCCCCCCEEEEeCCCCccHHHHHH-HcCCCCCCEE--EEEEChHHhcCCCChHHEEEecHHHCCc
Confidence 568999999 3 7999999998766 9999 9999999999 9999999999999 8899999999954
No 13
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=96.36 E-value=0.031 Score=52.81 Aligned_cols=104 Identities=18% Similarity=0.310 Sum_probs=69.2
Q ss_pred EEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee-------cceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-------TGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~-------t~~l~lel~~~~~~ 406 (867)
|-|.|+.++||+.... ...+-||.++-. ..+. -++.+.-+.+|-|.+.-.|..-. ...|.|++..+..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-~~~~--kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-KEKY--STSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-Ceee--eeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence 3466899999986532 346789998732 2111 11222224578888776776632 4578888877752
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEeeccCCC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~ 447 (867)
+.+...||.+.|++.+|.... .-....|++|.+..+
T Consensus 77 ----~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~ 112 (126)
T cd08682 77 ----LGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPG 112 (126)
T ss_pred ----cCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCC
Confidence 456789999999999998532 445789999986544
No 14
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=96.33 E-value=0.051 Score=54.25 Aligned_cols=78 Identities=15% Similarity=0.376 Sum_probs=60.0
Q ss_pred eecccceeeEEEEee-ecceEEEEEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCee
Q 002906 377 LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPIS 455 (867)
Q Consensus 377 ~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~ 455 (867)
+.++-|++...|+|. +...|.|++..+.. + +...||+++|+++++... -..+.|++|....+..-...-.
T Consensus 80 ~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~-----~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~~~~~~~~~~~ 150 (158)
T cd04015 80 SENPVWNESFHIYCAHYASHVEFTVKDNDV-----V-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDSNGKPPKPGAK 150 (158)
T ss_pred CCCCccceEEEEEccCCCCEEEEEEEeCCC-----c-CCcEEEEEEEEhHHccCC---CCcceEEECcCCCCCCCCCCCE
Confidence 357888989999986 34578888876542 3 347999999999999853 3679999998776655555678
Q ss_pred EEEEEeec
Q 002906 456 LRIAVSFT 463 (867)
Q Consensus 456 lrv~~S~T 463 (867)
|||.+.+|
T Consensus 151 l~v~~~f~ 158 (158)
T cd04015 151 IRVSLQFT 158 (158)
T ss_pred EEEEEEEC
Confidence 99988876
No 15
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.12 E-value=0.073 Score=50.33 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=77.9
Q ss_pred eeeccCCCccccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee----ecceEEEEEEeeCCCcccccCCc
Q 002906 339 IVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKIPMTGAS 414 (867)
Q Consensus 339 iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE----~t~~l~lel~~~~~~~~~~~k~s 414 (867)
++.++||+. .....+-||++.-.. .+ .-++.+.=+.++-|++.-.|... ....|.|++..+.. +.+.
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~-~~--~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-----~~~d 72 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRG-VK--KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-----VGRN 72 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECC-Ee--eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-----CCCC
Confidence 577888887 343467788877321 01 11111222357778878888874 35678888887753 3466
Q ss_pred cccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeecCCCC
Q 002906 415 KTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTL 467 (867)
Q Consensus 415 k~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~TpPv~ 467 (867)
..||.+.|+++++... -....|++|.+.++. ...-+|++.+++.||--
T Consensus 73 ~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~--~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 73 RLIGSATVSLQDLVSE---GLLEVTEPLLDSNGR--PTGATISLEVSYQPPDG 120 (127)
T ss_pred ceEEEEEEEhhHcccC---CceEEEEeCcCCCCC--cccEEEEEEEEEeCCCC
Confidence 8999999999999964 357889999765432 22469999999999854
No 16
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=96.01 E-value=0.093 Score=49.25 Aligned_cols=103 Identities=21% Similarity=0.185 Sum_probs=66.0
Q ss_pred EEeeeccCCCccc-cCCCceEEEEeccCCCcccccccce-eeeecccceeeEEEEeee--cceEEEEEEeeCCCcccccC
Q 002906 337 VEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 337 ~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~-~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~k 412 (867)
|.|++++||+... ....+-||.+...+..... .+.++ .=+.+|-|++...|.... ...|.|+++.+.. +.
T Consensus 5 V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~-~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-----~~ 78 (126)
T cd04043 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRI-AKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-----VG 78 (126)
T ss_pred EEEEEeECCCCCCCCCCCCceEEEEECCCCeee-ecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-----CC
Confidence 4578899998542 2235689988633211111 12222 123567787777787764 5678888876653 34
Q ss_pred CccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 413 ~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
+..+||.+.|++.++......-..++||+|.+.
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~ 111 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQ 111 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcCCC
Confidence 678899999999987643213457899999874
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.00 E-value=0.079 Score=52.58 Aligned_cols=121 Identities=12% Similarity=0.223 Sum_probs=78.3
Q ss_pred EEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceee--eecccceeeEEEEee-e-cceEEEEEEeeCCCccc
Q 002906 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 409 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~--~s~~~~k~~~~~qCE-~-t~~l~lel~~~~~~~~~ 409 (867)
+.|.|+.++||+.... -..+-||.++-.. ... +.++.. +.+|-|.+.-.|... + ...|.|++..+..
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~--kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~---- 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVL--RTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG---- 73 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEe--eeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC----
Confidence 3566789999976533 3467888887321 111 222222 247888877777773 3 4588899886653
Q ss_pred ccCCccccceeeeecccccCC-CCcceEeEEEeeccCCCC----CC-CCCeeEEEEEeecC
Q 002906 410 MTGASKTMGTASLSLQNFISP-ISKLAVEQWFDLVPRSGN----VS-SKPISLRIAVSFTI 464 (867)
Q Consensus 410 ~~k~sk~~g~~s~~~~dll~~-~~~Ls~e~w~~l~~~~~~----~~-~~p~~lrv~~S~Tp 464 (867)
+++..+||.+.|+++++... +..-..++||+|...++. .. ...-+|+|-+++++
T Consensus 74 -~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 74 -PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred -CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 34568999999999999753 123457999999877542 11 22247777777773
No 18
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.86 E-value=0.064 Score=49.23 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=70.2
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee--cceEEEEEEeeCCCccccc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~ 411 (867)
+.|.+++++|||... ....+-||.++-.. ...+ ++...=+.++.|.+...|.+.. ...|.|+++.+..
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~k-T~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~------ 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQK-SKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT------ 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEe-CccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC------
Confidence 457789999998642 23467788877322 1111 1222224578899899999984 5678888887653
Q ss_pred CCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
.+.||.+.|++.+|+.. +....+.||+|..+
T Consensus 73 --~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLSELLKE-PDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHHHhhcc-ccceeeeeEecCCC
Confidence 57899999999999976 36779999999654
No 19
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=95.74 E-value=0.099 Score=48.50 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=67.1
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceee--eecccceeeEEEEeee--cceEEEEEEeeCCCccc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIP 409 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~--~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~ 409 (867)
+.|.|+.++|||... ....+-||.+.-.. . ..+.+... +.+|-|++...|..-. ...|.|||..+..
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~---~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---- 74 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG-V---TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK---- 74 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC-C---ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC----
Confidence 566789999998652 23367888887332 1 11122211 2368888777787753 4578899887653
Q ss_pred ccCCccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 410 ~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
++ ..+||.+.|++.+++... ..+.|++|.+..
T Consensus 75 -~~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~ 106 (118)
T cd08681 75 -RK-PDLIGDTEVDLSPALKEG---EFDDWYELTLKG 106 (118)
T ss_pred -CC-CcceEEEEEecHHHhhcC---CCCCcEEeccCC
Confidence 23 789999999999998653 368999997654
No 20
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=95.53 E-value=0.13 Score=49.55 Aligned_cols=113 Identities=8% Similarity=0.179 Sum_probs=73.9
Q ss_pred EEEeeeccCCCccccCCCceEEEEeccCCCcccccccceee--eecccceeeEEEEeee-cceEEEEEEeeCCCcccccC
Q 002906 336 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 336 ~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~--~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~~~~~k 412 (867)
.|.++.+++++...-...+-||+++--+ .-+ +.++.. ..+|-|.+.-+|.+.. ...|.|||..+.. +.
T Consensus 5 ~v~v~~Ak~l~~~~~g~sDPYv~i~lg~--~~~--kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~-----~~ 75 (121)
T cd04016 5 SITVVQAKLVKNYGLTRMDPYCRIRVGH--AVY--ETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERA-----FT 75 (121)
T ss_pred EEEEEEccCCCcCCCCCCCceEEEEECC--EEE--EeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCC-----Cc
Confidence 4456777777643222367899887322 111 223322 3578899999999974 4689999988774 45
Q ss_pred CccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEe
Q 002906 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 461 (867)
Q Consensus 413 ~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S 461 (867)
+...||.++|++.+.+.+.. .++.||+|.+.++. .+.=+||+.+|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~--~~~~W~~L~~~~~~--~~~g~i~l~l~ 120 (121)
T cd04016 76 MDERIAWTHITIPESVFNGE--TLDDWYSLSGKQGE--DKEGMINLVFS 120 (121)
T ss_pred CCceEEEEEEECchhccCCC--CccccEeCcCccCC--CCceEEEEEEe
Confidence 67899999999975443332 36999999886553 24456666554
No 21
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=95.47 E-value=0.075 Score=49.28 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=68.8
Q ss_pred EEEeeeccCCCcccc--CCCceEEEEeccCCCccccccccee-eeecccc-eeeEEEEeee----cceEEEEEEeeCCCc
Q 002906 336 FVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLT-ILSKSGM-KQVASFQCEA----TGELLFELVSHSTSK 407 (867)
Q Consensus 336 ~~~iv~~~n~p~~~k--~~~~~fvr~~~~q~d~~~~~~~~~~-~~s~~~~-k~~~~~qCE~----t~~l~lel~~~~~~~ 407 (867)
-|.|++++|||...+ ...+-||.+.-.. .. .+.++. -+.+|-| .+...|.... +..|.|+|..+..
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~--~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-- 75 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TT--YKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-- 75 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC--ee--EecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC--
Confidence 356789999986432 2357899988533 11 122221 2346777 6666666652 3678899987763
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
+++..+||.+.+++++|..+.+...+++||+|..
T Consensus 76 ---~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 ---YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ---CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 4567899999999999999766777999999853
No 22
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=95.42 E-value=0.22 Score=47.18 Aligned_cols=107 Identities=7% Similarity=0.046 Sum_probs=71.9
Q ss_pred EEEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeeecceEEEEEEeeCCCcccccC
Q 002906 334 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~t~~l~lel~~~~~~~~~~~k 412 (867)
|+.|.|+.++||+.... ...+-||++.-. ..... -++...-+.+|-|+....|...+...|.||+..+... .+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~-~~~~~-kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~----~~ 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD-GGQTH-STDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKF----KK 74 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC-Cccce-EccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCC----CC
Confidence 57788999999975421 235678888742 11111 1122222457888878888888888999999876541 22
Q ss_pred C-ccccceeeeecccccCCCCcceEeEEEeeccCCCC
Q 002906 413 A-SKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (867)
Q Consensus 413 ~-sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~ 448 (867)
. ...||.+.|+.++|+... =+...|++|.+.+..
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~--~~~~~~~~l~~~~~~ 109 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLK--DTGYQRLDLRKLKKS 109 (123)
T ss_pred CCCceEeEEEEEHHHccccC--CCccceeEeecCCCC
Confidence 2 579999999999998653 245669999666543
No 23
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.27 E-value=0.23 Score=46.99 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=77.7
Q ss_pred EEEeeeccCCCccc-cCCCceEEEEeccCC---Cccccc-ccceeeeecccceeeEEEEeee-cceEEEEEEeeCCCccc
Q 002906 336 FVEIVAVKNLPEDH-KDKGDLFVFFSKSQP---DIFFNA-KQKLTILSKSGMKQVASFQCEA-TGELLFELVSHSTSKIP 409 (867)
Q Consensus 336 ~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~---d~~~~~-~~~~~~~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~~~ 409 (867)
.|.|+.++||+... ....+-||++.-... +..... ++.+.=+.+|-|++...|+..+ ...|.|+++.+..
T Consensus 3 ~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~---- 78 (133)
T cd04033 3 RVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR---- 78 (133)
T ss_pred EEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC----
Confidence 45578889998552 234678888874322 111111 1112223568888888888765 5678888886653
Q ss_pred ccCCccccceeeeecccccCCCCc---ceEeEEEeeccCCCCCCCCCeeEEEEEee
Q 002906 410 MTGASKTMGTASLSLQNFISPISK---LAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (867)
Q Consensus 410 ~~k~sk~~g~~s~~~~dll~~~~~---Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~ 462 (867)
+.+...||.+.|++.++....+. -..++|+.|.+... .+...=+|++.+++
T Consensus 79 -~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 -LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-KSRVKGHLRLYMAY 132 (133)
T ss_pred -CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-CCcceeEEEEEEee
Confidence 45678999999999999976432 35889999986533 22334477777664
No 24
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=95.26 E-value=0.13 Score=48.30 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=67.6
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee----cceEEEEEEeeCCCccc
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSKIP 409 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~~~ 409 (867)
+.|.|+.++|||.. .....+-||.+.-...+.-..-++.+.-+.+|.|+....|+... +..|.|+|..+..
T Consensus 18 L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~---- 93 (124)
T cd08385 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR---- 93 (124)
T ss_pred EEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----
Confidence 56778999999854 22346789988743211111111222234578888888888863 4578888887653
Q ss_pred ccCCccccceeeeecccccCCCCcceEeEEEeec
Q 002906 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (867)
Q Consensus 410 ~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~ 443 (867)
+.+...||.+.|+++++... -..+.|++|.
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLG---HVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCC---CCcceEEEcc
Confidence 45678999999999998653 2478999974
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=95.18 E-value=0.35 Score=44.69 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=65.6
Q ss_pred EEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-e-cceEEEEEEeeCCCcccccCC
Q 002906 337 VEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 337 ~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~-t~~l~lel~~~~~~~~~~~k~ 413 (867)
|.++.++|||... ....+-||.++-.+ ... -++...-+.+|-|++...|.-. + ...|.|++..+.. +.+
T Consensus 4 V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-----~~~ 75 (116)
T cd08376 4 IVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKY-KSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-----GKK 75 (116)
T ss_pred EEEEEEECCCCCCCCCCCCcEEEEEECC--EeE-ecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-----CCC
Confidence 4578889998652 22357788887421 111 1111222457778876666543 2 5678888776543 456
Q ss_pred ccccceeeeecccccCCCCcceEeEEEeeccCCC
Q 002906 414 SKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (867)
Q Consensus 414 sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~ 447 (867)
...||.+.|++.+|.... ..+.|++|.+..|
T Consensus 76 ~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~G 106 (116)
T cd08376 76 DEFIGRCEIDLSALPREQ---THSLELELEDGEG 106 (116)
T ss_pred CCeEEEEEEeHHHCCCCC---ceEEEEEccCCCc
Confidence 789999999999998643 5799999988744
No 26
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=95.00 E-value=0.22 Score=47.40 Aligned_cols=100 Identities=18% Similarity=0.332 Sum_probs=68.9
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCCcccccccc-eeeeecccceeeEEEEeee--cceEEEEEEeeCCCccccc
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQK-LTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~-~~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~ 411 (867)
+.|.|++++||+.. + .+-||.++-.+ . ..+.+ +.=+.+|-|.+.-.|+.+. ...|.|++..+.. +
T Consensus 2 L~V~Vi~a~~L~~~-~--~Dpyv~v~l~~--~--~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-----~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN-S--NDPVVEVKLGN--Y--KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-----A 69 (121)
T ss_pred EEEEEEEecCCCcc-c--CCCEEEEEECC--c--cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-----C
Confidence 35668999999887 4 78899888432 1 11222 2224578888888888763 4568888876642 2
Q ss_pred CCccccceeeeecccccCCC--CcceEeEEEeeccCCC
Q 002906 412 GASKTMGTASLSLQNFISPI--SKLAVEQWFDLVPRSG 447 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~--~~Ls~e~w~~l~~~~~ 447 (867)
+..+||.+.|+++++.... ..-...+|++|.+..+
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 6779999999999997532 1223679999988765
No 27
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=94.95 E-value=0.32 Score=45.47 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=65.4
Q ss_pred EEEeeeccCCCcc-c--cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee--ecceEEEEEEeeCCCcccc
Q 002906 336 FVEIVAVKNLPED-H--KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--ATGELLFELVSHSTSKIPM 410 (867)
Q Consensus 336 ~~~iv~~~n~p~~-~--k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE--~t~~l~lel~~~~~~~~~~ 410 (867)
.|.|+..+||+.. . ....+-||.+.-.+ ... -++.+.=+.+|-|.+...|... ....|.|++.-+..
T Consensus 4 ~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~-kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~----- 75 (128)
T cd04024 4 RVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRF-KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR----- 75 (128)
T ss_pred EEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEE-ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-----
Confidence 4567888998753 2 22356788776321 111 1111222456777766666665 36788888876553
Q ss_pred cCCccccceeeeecccccCCCCcceEeEEEeeccCCC
Q 002906 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (867)
Q Consensus 411 ~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~ 447 (867)
+.+...||.++|++.+++.....=..+.|++|.+.+.
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~ 112 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP 112 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCccc
Confidence 3466899999999999985321223689999987744
No 28
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=94.89 E-value=0.27 Score=46.88 Aligned_cols=103 Identities=12% Similarity=0.177 Sum_probs=66.4
Q ss_pred EEEEeeeccCCCcccc-----------CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeeecceEEEEEEee
Q 002906 335 VFVEIVAVKNLPEDHK-----------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSH 403 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-----------~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~t~~l~lel~~~ 403 (867)
+.|.|+.++||+.... ...+-||.+.-. ..... -++...-+.+|-|.....|+......|.|++..+
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~-~~~~~-kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d~ 83 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD-DTHIG-KTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC-CEEEe-EEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEeC
Confidence 4566788888864321 135778887622 11111 1111122456778888888887667788887644
Q ss_pred CCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 404 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 404 ~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
.. +.+..++|.+.|++++|... ..-..+.|++|.|.
T Consensus 84 ~~-----~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 119 (132)
T cd04014 84 AA-----IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEPQ 119 (132)
T ss_pred CC-----CCCCceEEEEEEEhHHhccc-CCCcccEEEEccCC
Confidence 32 34668999999999999973 13347999999865
No 29
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.80 E-value=0.35 Score=45.83 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=74.1
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee-c----ceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-T----GELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~-t----~~l~lel~~~~~~~~ 408 (867)
+.|.|+.++||+.. .....+-||.+.-.. .+. -++.+.=+.+|-|++.-.|.+.. . ..|.|++..+.. .
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~--rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~- 76 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKK--RTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-S- 76 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEe--cceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-C-
Confidence 45778999999754 223467888876221 111 11112223567888888888862 2 357777776432 1
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeec
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 463 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~T 463 (867)
.++...||.+.|+++++..+ .-....|++|.+++ ..+..-=+|++.+.+|
T Consensus 77 --~~~d~~lG~v~i~l~~l~~~--~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 --GRRRSFLGRVRISGTSFVPP--SEAVVQRYPLEKRG-LFSRVRGEIGLKVYIT 126 (127)
T ss_pred --cCCCCeeeEEEEcHHHcCCC--CCccceEeEeeeCC-CCCCccEEEEEEEEEc
Confidence 23678999999999999843 23467999997652 1222223777777776
No 30
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=94.80 E-value=0.26 Score=46.27 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=65.6
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee----cceEEEEEEeeCCCccc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSKIP 409 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~~~ 409 (867)
+.|.|+.++||+... ....+-||++.-...+....-++.+.=+.+|-|+....|.... ...|.|+|..+..
T Consensus 18 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~---- 93 (124)
T cd08387 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ---- 93 (124)
T ss_pred EEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----
Confidence 566788999998542 2336789998853221211111222224567787666665542 3578888877643
Q ss_pred ccCCccccceeeeecccccCCCCcceEeEEEeec
Q 002906 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (867)
Q Consensus 410 ~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~ 443 (867)
+++...||.+.|+++|+.... .+..|+.|.
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 456789999999999998653 568899974
No 31
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=94.68 E-value=0.27 Score=45.51 Aligned_cols=99 Identities=10% Similarity=0.090 Sum_probs=65.3
Q ss_pred EEEEEeeeccCCCccccCCCceEEEEeccCCCcccccccce-eeeecccceeeEEEEee-e-----cceEEEEEEeeCCC
Q 002906 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCE-A-----TGELLFELVSHSTS 406 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~-~~~s~~~~k~~~~~qCE-~-----t~~l~lel~~~~~~ 406 (867)
+|.|.+++++||+ ..+ .+-||.++-.+ .. .+.++ .=+..+-|.+.-.|.-. + ..-|.|+|+.+..
T Consensus 5 ~l~V~v~~a~~L~-~~~--~dpyv~v~~~~--~~--~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~- 76 (111)
T cd04011 5 QVRVRVIEARQLV-GGN--IDPVVKVEVGG--QK--KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS- 76 (111)
T ss_pred EEEEEEEEcccCC-CCC--CCCEEEEEECC--Ee--eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-
Confidence 5778889999999 323 57799988431 11 11222 11246667766555542 2 2457777776543
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
+.+..+||.++|+++++......=-.++||+|..
T Consensus 77 ----~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 ----LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ----cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 4567999999999999988755556799999853
No 32
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.40 E-value=0.46 Score=44.06 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=72.2
Q ss_pred EEEEeeeccCCCccc-c-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee-cceEEEEEEeeCCCccccc
Q 002906 335 VFVEIVAVKNLPEDH-K-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~~~~~ 411 (867)
+.|.|++++|||... . ...+-||.++-.+. ....-++.+.=+.++.|++...|.... ...|.||+..+.. +
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~-----~ 77 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFND-----K 77 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCC-----C
Confidence 456688999998432 1 23578988885432 111111112224577888777776654 6789999887754 4
Q ss_pred CCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeecC
Q 002906 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~Tp 464 (867)
++..+||.++|++.+|.+.. ... +.|..|.+++. +.=+|+|.+.+-|
T Consensus 78 ~~d~~iG~~~~~l~~l~~~~-~~~-~~~~~~~~~~k----~~G~i~~~l~~~p 124 (124)
T cd04044 78 RKDKLIGTAEFDLSSLLQNP-EQE-NLTKNLLRNGK----PVGELNYDLRFFP 124 (124)
T ss_pred CCCceeEEEEEEHHHhccCc-ccc-CcchhhhcCCc----cceEEEEEEEeCC
Confidence 57799999999999999864 221 12333332221 2246777776654
No 33
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=94.39 E-value=0.69 Score=43.23 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=65.8
Q ss_pred EEEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee--cceEEEEEEeeCCCcccccC
Q 002906 336 FVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 336 ~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~k 412 (867)
.|.++.++|||.. .....+-||+++-........-++.+.=+.+|-|.+...|...+ ..-|.|+++.+.. +
T Consensus 3 ~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-----~- 76 (119)
T cd04036 3 TVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-----V- 76 (119)
T ss_pred EEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-----C-
Confidence 4567889999854 22346789998843211111112222223567888777777654 2346777776542 4
Q ss_pred CccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 413 ~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
+...||++.|++.+|... -..+.||+|.+.
T Consensus 77 ~~~~iG~~~~~l~~l~~g---~~~~~~~~L~~~ 106 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLG---EKVRVTFSLNPQ 106 (119)
T ss_pred CCcccEEEEEEHHHCCCC---CcEEEEEECCCC
Confidence 667999999999999753 478999999875
No 34
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=94.20 E-value=0.57 Score=45.55 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=74.3
Q ss_pred EEEeeeccC---CCccc-cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-ecceEEEEEEeeCCCc-cc
Q 002906 336 FVEIVAVKN---LPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSK-IP 409 (867)
Q Consensus 336 ~~~iv~~~n---~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~-~~ 409 (867)
.|-+++++| |+... .-..+-||.++- ...+. + ++.+.=+.+|-|.+...|++. +...|.|++..+.... -.
T Consensus 3 ~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~-g~~~~-r-Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 3 EVGILGAQGLDVLRAKDGRGSTDAYCVAKY-GPKWV-R-TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred EEEEEEeECCccccccccCCCCCeeEEEEE-CCEEe-E-cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccc
Confidence 344588888 55331 123578999872 11111 1 222222467889999999996 5668999988876410 01
Q ss_pred ccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEE
Q 002906 410 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRI 458 (867)
Q Consensus 410 ~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv 458 (867)
.+++...||.+.|++++|.... ..+.||+|.+.+.....+.-+||.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCCccCCcEEEe
Confidence 1357899999999999998543 579999998665433344445553
No 35
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=94.12 E-value=0.28 Score=48.19 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=69.6
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-ecceEEEEEEeeCCCcccccCC
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~k~ 413 (867)
++|.++.+++|+.... -+-||.++- +..+ .+.++.=-++|-|.+...|+-+ +..+|++|++.+.. + .
T Consensus 4 L~V~Vv~Ar~L~~~~~--~dPYV~Ik~-g~~k---~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~-----~-~ 71 (127)
T cd08394 4 LCVLVKKAKLDGAPDK--FNTYVTLKV-QNVK---STTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGL-----I-W 71 (127)
T ss_pred EEEEEEEeeCCCCCCC--CCCeEEEEE-CCEE---eEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCC-----c-C
Confidence 5777899999976433 456999872 2211 1112211247888999999986 55669999999762 3 6
Q ss_pred ccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 414 SKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 414 sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
-.++|.++|++++++..++.|. ..|+.|.|.
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~-~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGP-GEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCC-CccEecChH
Confidence 7899999999999998875444 469999765
No 36
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=94.07 E-value=0.37 Score=46.04 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=66.0
Q ss_pred EEEEeeeccCCCccc--cCCCceEEEEeccCCCc-ccccccc-eeeeecccceeeEEEEeee----cceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDI-FFNAKQK-LTILSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~--k~~~~~fvr~~~~q~d~-~~~~~~~-~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~ 406 (867)
+.|.|+.++||+... ....+-||.+.-+.-+. ..+-+.+ ..-+.+|.|++.-.|.-.. ...|.|+|..+..
T Consensus 17 L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~- 95 (125)
T cd04029 17 LNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR- 95 (125)
T ss_pred EEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC-
Confidence 445568899997542 23467899987542222 1111122 2223567888766666542 3468888887653
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEeec
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~ 443 (867)
+++...||.+.|++.++--. -..+.|++|+
T Consensus 96 ----~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 ----FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred ----CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 56788999999999999643 3589999974
No 37
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=93.98 E-value=0.43 Score=44.54 Aligned_cols=99 Identities=11% Similarity=0.180 Sum_probs=65.6
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCc--ccccccceeeeecccceeeEEEEeee-----cceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDI--FFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~--~~~~~~~~~~~s~~~~k~~~~~qCE~-----t~~l~lel~~~~~~ 406 (867)
+.|.|+.++||+... ....+-||++.-..... ...-++.+.=+.+|-|+....|++-+ +..|.|+|..+..
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~- 96 (125)
T cd04031 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR- 96 (125)
T ss_pred EEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC-
Confidence 667789999997542 23467899988543211 11112223334678888888887532 4578888887654
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
+++...||.++|++++.... ..+.|++|
T Consensus 97 ----~~~~~~iG~~~i~l~~~~~~----~~~~W~~L 124 (125)
T cd04031 97 ----DGENDFLGEVVIDLADALLD----DEPHWYPL 124 (125)
T ss_pred ----CCCCcEeeEEEEeccccccc----CCcceEEC
Confidence 46788999999999994332 23689987
No 38
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=93.94 E-value=0.39 Score=44.99 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=65.1
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee-----cceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~-----t~~l~lel~~~~~~~~ 408 (867)
+.|.++.++|||... ....+-||++.-..-+.-..-++.+.=+.+|.|++...|.--+ ...|.|++.-+..
T Consensus 18 L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~--- 94 (125)
T cd08386 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR--- 94 (125)
T ss_pred EEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC---
Confidence 556678999997542 2346789998753222111111112223467788777775322 2458888886653
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
+.+...||.++|++.++... -..+.|++|.|
T Consensus 95 --~~~~~~iG~~~i~l~~l~~~---~~~~~W~~l~~ 125 (125)
T cd08386 95 --FSRNDPIGEVSLPLNKVDLT---EEQTFWKDLKP 125 (125)
T ss_pred --CcCCcEeeEEEEecccccCC---CCcceEEecCC
Confidence 45667899999999998843 36899999875
No 39
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=93.94 E-value=0.62 Score=43.04 Aligned_cols=99 Identities=16% Similarity=0.252 Sum_probs=65.0
Q ss_pred EEEEeeeccCCCcccc-------CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee--cceEEEEEEeeCC
Q 002906 335 VFVEIVAVKNLPEDHK-------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHST 405 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-------~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~ 405 (867)
+.|.|+.++||+.... ...+-||.++-.+ ...+ ++.+.=+.+|-|++...|.+.. ...|.|++..+..
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~k-T~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFK-SKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEE-ccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 4566889999985421 2356788887432 1111 1112224567777766776653 5677888776542
Q ss_pred CcccccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 406 ~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
+ +...||.+.|+++++.+.. ..+.||+|.+.
T Consensus 80 -----~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~ 110 (121)
T cd08391 80 -----D-KDDFLGRLSIDLGSVEKKG---FIDEWLPLEDV 110 (121)
T ss_pred -----C-CCCcEEEEEEEHHHhcccC---ccceEEECcCC
Confidence 3 6678999999999998753 36999999764
No 40
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=93.88 E-value=0.36 Score=46.89 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=66.6
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCCccc-cccc-ceeeeecccceeeEEEEee----ecceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFF-NAKQ-KLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~-~~~~-~~~~~s~~~~k~~~~~qCE----~t~~l~lel~~~~~~~~ 408 (867)
+.|.|+.++||+.......+.||++.-+-.+... +-+. ...-+.+|.|+..-.|.-. .+..|.|+|..+..
T Consensus 17 L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~--- 93 (137)
T cd08409 17 LTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG--- 93 (137)
T ss_pred EEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC---
Confidence 4566788999975434447899999733222221 1111 1223456788866666654 24679999988875
Q ss_pred cccCCccccceeeee------------cccccCCCCcceEeEEEe
Q 002906 409 PMTGASKTMGTASLS------------LQNFISPISKLAVEQWFD 441 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~------------~~dll~~~~~Ls~e~w~~ 441 (867)
+++...||.++|. |+||++. |...+.+|=.
T Consensus 94 --~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~-p~~~i~~WH~ 135 (137)
T cd08409 94 --VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK-PKELIKRWHA 135 (137)
T ss_pred --CCCcceEEEEEECCcccCCChHHHHHHHHHhC-CCCceeEEEe
Confidence 5678899999997 8888876 4677777754
No 41
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=93.75 E-value=0.43 Score=44.75 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=65.7
Q ss_pred EEEEeeeccCCCcccc-CCCceEEEEeccCCC--cccccccceeeeecccceeeEEEEeee----cceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD--IFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d--~~~~~~~~~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~ 407 (867)
+.|.|+.++||+.... ...+-||++.-+... ....-++.+.=+.+|.|+..-.|.... +..|.+++..+.. .
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~-~ 96 (127)
T cd04030 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS-F 96 (127)
T ss_pred EEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc-c
Confidence 5667889999985532 457889998854311 111111222224567788777777652 3566666665542 2
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeec
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~ 443 (867)
+ .++...||.+.|++.+|... -..+.|++|.
T Consensus 97 ~--~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 97 L--SREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred c--CCCCceEEEEEEeccccccc---CCccceEECc
Confidence 1 25788999999999998543 3578999874
No 42
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=93.66 E-value=0.66 Score=42.75 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=68.1
Q ss_pred EEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee--cceEEEEEEeeCCCcccccC
Q 002906 336 FVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 336 ~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~k 412 (867)
.|.|+.++||+.... ...+-||++.-.. .... -++.+.-+..+-|+....|.... ...+.|++..+.. +.
T Consensus 2 ~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~-~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-----~~ 74 (115)
T cd04040 2 TVDVISAENLPSADRNGKSDPFVKFYLNG-EKVF-KTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-----GG 74 (115)
T ss_pred EEEEEeeeCCCCCCCCCCCCCeEEEEECC-Ccce-eeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-----CC
Confidence 356789999986532 2356788887432 1111 11222223567777666666642 4678888887763 45
Q ss_pred CccccceeeeecccccCCCCcceEeEEEeeccCCCC
Q 002906 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (867)
Q Consensus 413 ~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~ 448 (867)
+.+.||.+.+++.++... -..+.|++|.++++.
T Consensus 75 ~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~g~~ 107 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPE---ETTELTLPLDGQGGG 107 (115)
T ss_pred CCCceEEEEEEHHHcCCC---CcEEEEEECcCCCCc
Confidence 778999999999999864 357999999988664
No 43
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=93.60 E-value=0.28 Score=45.59 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=65.3
Q ss_pred EEEEeeeccCCCcccc--CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee-----cceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k--~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~-----t~~l~lel~~~~~~~ 407 (867)
+.|.|++.+|||.... ...+-||.+.-....+...-++.+.-+.+|-|+....|.+.+ ...|.|++.-+..
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~-- 80 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR-- 80 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC--
Confidence 4566899999986422 246789988743222222122222234577888788887764 3578888887653
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
+.+...||.++|++.+|+.. .+|.+|..
T Consensus 81 ---~~~dd~lG~~~i~l~~l~~~------~~~~~~~~ 108 (111)
T cd04041 81 ---FTADDRLGRVEIDLKELIED------RNWMGRRE 108 (111)
T ss_pred ---CCCCCcceEEEEEHHHHhcC------CCCCcccc
Confidence 45678999999999999854 57777643
No 44
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=93.60 E-value=0.66 Score=43.26 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred EEEEeeeccCCCccc--cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee----ecceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~~--k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE----~t~~l~lel~~~~~~~~ 408 (867)
+.|.|+.++|||... ....+-||.+.-..-+....-++...-+.++-|++...|.=. ....|.|++..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~--- 92 (123)
T cd08390 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR--- 92 (123)
T ss_pred EEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc---
Confidence 456688999998653 233577998874322221111122223456777765555422 13457777775543
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
+++...||.+.|+++++... .....|++|.|
T Consensus 93 --~~~~~~iG~~~i~L~~l~~~---~~~~~w~~L~~ 123 (123)
T cd08390 93 --FSRHCIIGHVLFPLKDLDLV---KGGVVWRDLEP 123 (123)
T ss_pred --CCCCcEEEEEEEeccceecC---CCceEEEeCCC
Confidence 35678999999999999864 46679999864
No 45
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=93.59 E-value=0.64 Score=43.66 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=69.7
Q ss_pred EEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceee--eecccceeeEEEEeee------cceEEEEEEeeCCC
Q 002906 336 FVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA------TGELLFELVSHSTS 406 (867)
Q Consensus 336 ~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~--~s~~~~k~~~~~qCE~------t~~l~lel~~~~~~ 406 (867)
-|.|+.+++|+... ....+-||.++-...++. +.++.. +.++.|+..-+|++.. ...|.||++.+..
T Consensus 3 ~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~---~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~- 78 (125)
T cd04051 3 EITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQ---STPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP- 78 (125)
T ss_pred EEEEEEcccCCCCCcccCCceEEEEEECCCccc---ccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-
Confidence 34578889998542 234678998874331221 222222 3578888888888873 3688888887764
Q ss_pred cccccCCccccceeeeecccccCCCCc--ceEeEEEeeccCC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISK--LAVEQWFDLVPRS 446 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~--Ls~e~w~~l~~~~ 446 (867)
+++..+||.+.|++.|++...+. -....|++|...+
T Consensus 79 ----~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~ 116 (125)
T cd04051 79 ----SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS 116 (125)
T ss_pred ----CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC
Confidence 35678999999999999987532 1356799997554
No 46
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=93.54 E-value=0.77 Score=44.07 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=67.0
Q ss_pred EEEEeeeccCCCcccc--CCCceEEEEeccCCCcccccccceeeeecccceeeEEEE-eee----cceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQ-CEA----TGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k--~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~q-CE~----t~~l~lel~~~~~~~ 407 (867)
+.|.|++++|||.... ...+-||++.-+.-+.-..-++.+.=+.+|-|+....|+ -++ ...|.|++..+..
T Consensus 18 L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~-- 95 (128)
T cd08388 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR-- 95 (128)
T ss_pred EEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC--
Confidence 5666789999986422 346889998743111111111222224578888777774 222 2356777776542
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
+++..+||.+.|++.++--. ....++-|++|.|
T Consensus 96 ---~~~d~~lG~~~i~L~~l~~~-~~~~~~~~~~~~~ 128 (128)
T cd08388 96 ---YSRDDVIGEVVCPLAGADLL-NEGELLVSREIQP 128 (128)
T ss_pred ---CCCCceeEEEEEeccccCCC-CCceEEEEEeccC
Confidence 55778999999999999643 3678999999765
No 47
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=93.49 E-value=0.57 Score=45.65 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=68.0
Q ss_pred EEeeeccCCCccccCCCceEEEEeccCCCcccccccc-eeeeecccceeeEEEEeee-----------------cceEEE
Q 002906 337 VEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQK-LTILSKSGMKQVASFQCEA-----------------TGELLF 398 (867)
Q Consensus 337 ~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~-~~~~s~~~~k~~~~~qCE~-----------------t~~l~l 398 (867)
|.|+.++||+.......+-||++.-..++.....+.+ +.-+..|-|.+...|+.-. ...|.|
T Consensus 3 V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i 82 (137)
T cd08675 3 VRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRV 82 (137)
T ss_pred EEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEE
Confidence 5688899998552234678999885543222211222 2224577787777777542 235667
Q ss_pred EEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCC
Q 002906 399 ELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (867)
Q Consensus 399 el~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~ 448 (867)
||..... +.+...||.+.|+++++... -..+.|++|.+++.+
T Consensus 83 ~V~d~~~-----~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~~~ 124 (137)
T cd08675 83 ELWHASM-----VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPREAP 124 (137)
T ss_pred EEEcCCc-----CcCCcEEEEEEEehhhccCC---CcccceEecCCcCCC
Confidence 7665553 45788999999999999854 356999999888643
No 48
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=93.49 E-value=0.53 Score=44.89 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=66.5
Q ss_pred EEEEEeeeccCCCccc--cCCCceEEEEeccCCCc--cc-ccccceeeeecccceeeEEEEee----ecceEEEEEEeeC
Q 002906 334 EVFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDI--FF-NAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHS 404 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~--k~~~~~fvr~~~~q~d~--~~-~~~~~~~~~s~~~~k~~~~~qCE----~t~~l~lel~~~~ 404 (867)
++.|.|++++|||... +...+-||++.-+ |+. .. .-++...=+.+|.|+..-.|... ....|.|+|..+.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~-p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLL-PDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEE-cCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence 3677789999998653 2357899998854 222 11 11222223456788876666654 2357888888775
Q ss_pred CCcccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 405 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 405 ~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
. +++...||.+.|++.++-... ..++|++|
T Consensus 95 ~-----~~~~~~iG~~~i~L~~~~~~~---~~~~W~~L 124 (125)
T cd08393 95 S-----LGRNSFLGEVEVDLGSWDWSN---TQPTWYPL 124 (125)
T ss_pred C-----CCCCcEeEEEEEecCccccCC---CCcceEEC
Confidence 3 567789999999999995332 35789986
No 49
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=93.43 E-value=0.56 Score=44.71 Aligned_cols=101 Identities=16% Similarity=0.234 Sum_probs=66.6
Q ss_pred EEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-----ecceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-----ATGELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-----~t~~l~lel~~~~~~~~ 408 (867)
+.|.|++++|||.... ...+.||++.-+ |++--+-+.++.-..+|-|.....|+-- ....|.|+|..+..
T Consensus 18 L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll-p~~~~~~kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~--- 93 (124)
T cd08389 18 LTVTVIRAQDIPTKDRGGASSWQVHLVLL-PSKKQRAKTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVER--- 93 (124)
T ss_pred EEEEEEEecCCCchhcCCCCCcEEEEEEc-cCCcceeecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECCC---
Confidence 5677899999986532 234679886532 2221111222222257778877777732 24578888888864
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
++....||.+.|+++++--. =....|++|.|
T Consensus 94 --~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~p 124 (124)
T cd08389 94 --MRKERLIGEKVVPLSQLNLE---GETTVWLTLEP 124 (124)
T ss_pred --cccCceEEEEEEeccccCCC---CCceEEEeCCC
Confidence 56789999999999999433 25889999875
No 50
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=93.43 E-value=0.59 Score=44.57 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=68.1
Q ss_pred EEEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeeecceEEEEEEeeCCCcccccCC
Q 002906 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~t~~l~lel~~~~~~~~~~~k~ 413 (867)
|+.|.|+..+.++.......+-||+++-.. ....-++...-+.+|-|+....|.......|.||+.-+.. ++.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~-----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHT-----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCC-----CCC
Confidence 455666676644444333467888887321 1111111122235788888888888777889999887764 456
Q ss_pred ccccceeeeecccccCCCCcceE--eEEEeeccCC
Q 002906 414 SKTMGTASLSLQNFISPISKLAV--EQWFDLVPRS 446 (867)
Q Consensus 414 sk~~g~~s~~~~dll~~~~~Ls~--e~w~~l~~~~ 446 (867)
...||.+.|++.+|+........ ..|++|+.++
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 78999999999999976433333 2588986443
No 51
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=93.03 E-value=0.53 Score=44.68 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=67.3
Q ss_pred EEEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-ecceEEEEEEeeCCCcccccCC
Q 002906 336 FVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 336 ~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~k~ 413 (867)
.|.|+.++||+.. .....+-||+++-.+ . ...-++...-+.+|-|++...|+.. +...|.||+..+.. +.+
T Consensus 4 ~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~-~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~-----~~~ 76 (120)
T cd04045 4 RLHIRKANDLKNLEGVGKIDPYVRVLVNG-I-VKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEK-----VGK 76 (120)
T ss_pred EEEEEeeECCCCccCCCCcCCEEEEEECC-E-EeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCC-----CCC
Confidence 4556788888754 222367788887421 1 1111122223457888877777776 45789999887653 445
Q ss_pred ccccceeeeecccccCCCCcceEeEEEeeccCCC
Q 002906 414 SKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (867)
Q Consensus 414 sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~ 447 (867)
...||.+.|++.++.+. +.+.|+.|..++.
T Consensus 77 d~~IG~~~~~l~~l~~~----~~~~~~~~~~~~~ 106 (120)
T cd04045 77 DRSLGSVEINVSDLIKK----NEDGKYVEYDDEE 106 (120)
T ss_pred CCeeeEEEEeHHHhhCC----CCCceEEecCCCc
Confidence 67999999999999976 5589999877653
No 52
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=92.96 E-value=0.5 Score=44.40 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=66.6
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceee--eecccceeeEEEEeee-----cceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCEA-----TGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~--~s~~~~k~~~~~qCE~-----t~~l~lel~~~~~~ 406 (867)
+.|.|+.++||+... ....+-||+++-.. . .. +.++.- +.++-|+....|.... ...|.|++..+..
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~-~~--~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~- 77 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT-Q-ER--KSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN- 77 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC-E-ee--eeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-
Confidence 446688999997542 23356788876321 1 11 112211 3467788777777763 3567888776654
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
+.+...||.+.|++.+++... ..+.|++|.|..
T Consensus 78 ----~~~d~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~ 110 (124)
T cd04049 78 ----FSDDDFIGEATIHLKGLFEEG---VEPGTAELVPAK 110 (124)
T ss_pred ----CCCCCeEEEEEEEhHHhhhCC---CCcCceEeeccc
Confidence 456789999999999999764 459999999873
No 53
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=92.72 E-value=0.24 Score=46.60 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=68.3
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCc-ccc-cccceeeeecccceeeEEEEeee----cceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDI-FFN-AKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~-~~~-~~~~~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~ 407 (867)
+.|.|+.++||+... ....+.||+++-...+. ... -++.+.-+.++.|++...|+... ...|.|+|.....
T Consensus 16 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 93 (134)
T cd00276 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS-- 93 (134)
T ss_pred EEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC--
Confidence 555668899998652 34578999988554321 111 12222334578888777777764 3568888776664
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
+++..+||.+.|++.+ . .-..+.|++|..+.
T Consensus 94 ---~~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 94 ---VGRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred ---CCCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 3577899999999999 2 23468999986663
No 54
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=92.62 E-value=1.6 Score=40.07 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=62.6
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee----cceEEEEEEeeCCCcccc
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSKIPM 410 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~~~~ 410 (867)
+.|.++.++|||... ..+-||.++-.+ ....+. +...= .+|-|.+...|..-. ...|.+++..+..
T Consensus 2 L~v~vi~a~~l~~~~--~~dpyv~v~~~~-~~~~kT-~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----- 71 (117)
T cd08383 2 LRLRILEAKNLPSKG--TRDPYCTVSLDQ-VEVART-KTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----- 71 (117)
T ss_pred eEEEEEEecCCCcCC--CCCceEEEEECC-EEeEec-ceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-----
Confidence 346688999998763 467888877321 111221 11112 567787766666644 2345555554432
Q ss_pred cCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEee
Q 002906 411 TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (867)
Q Consensus 411 ~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~ 462 (867)
..+...+|.+.|+-.+. .=..|.|++|.|.++ .....=.|++.+++
T Consensus 72 ~~~~~~~g~v~l~~~~~-----~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 72 KDRDIVIGKVALSKLDL-----GQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred CCCeeEEEEEEecCcCC-----CCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 23345566666654333 234799999988755 22233366666653
No 55
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=92.38 E-value=1.8 Score=43.21 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=66.0
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCC-c-ccccccceeeeecccceeeEEEEee------------e-----cce
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPD-I-FFNAKQKLTILSKSGMKQVASFQCE------------A-----TGE 395 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d-~-~~~~~~~~~~~s~~~~k~~~~~qCE------------~-----t~~ 395 (867)
+.|.+++++||+. ..-..+-||.++-.... + -..-++...=+.+|.|++.-.|... + ...
T Consensus 2 L~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 2 LSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred EEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 5677899999987 22235778877633211 1 0011111222346788888888883 1 235
Q ss_pred EEEEEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 396 LLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 396 l~lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
|.|++..+.. ++...+||.+.|+++++.... =....|+.|.+.+
T Consensus 81 L~i~V~d~~~-----~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~~~ 124 (148)
T cd04010 81 LRVDLWHASM-----GGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEcCCC-----CCCCceeEEEEEecccccccC--CcCcceeecCCcc
Confidence 6666665543 467889999999999988641 1358899998774
No 56
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=92.35 E-value=0.83 Score=43.46 Aligned_cols=100 Identities=17% Similarity=0.310 Sum_probs=64.9
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCCc--ccc-cccceeeeecccceeeEEEEeee-c--ceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDI--FFN-AKQKLTILSKSGMKQVASFQCEA-T--GELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~--~~~-~~~~~~~~s~~~~k~~~~~qCE~-t--~~l~lel~~~~~~~~ 408 (867)
+.|.|++++||+.......+-||++.-+ ||. ..+ -++...-+.+|-|++.-.|.+.. . .-|+|+|..+...
T Consensus 14 L~V~Vi~ar~L~~~~~g~~dpYVkv~l~-p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~-- 90 (119)
T cd08685 14 LTLHVLEAKGLRSTNSGTCNSYVKISLS-PDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK-- 90 (119)
T ss_pred EEEEEEEEECCCCCCCCCCCeeEEEEEE-eCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC--
Confidence 5677899999976533346889998833 332 111 12222234578888888888753 1 3466777655431
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
++....||.++|++.+++... -+++|+.|
T Consensus 91 --~~~~~~lG~~~i~l~~~~~~~---~~~~Wy~l 119 (119)
T cd08685 91 --SRDSGLLGCMSFGVKSIVNQK---EISGWYYL 119 (119)
T ss_pred --cCCCEEEEEEEecHHHhccCc---cccceEeC
Confidence 345789999999999998432 25899875
No 57
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=92.21 E-value=1.1 Score=43.17 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=65.5
Q ss_pred EEEEeeeccCCCccc-c-CCCceEEEEeccCCCc--ccc-cccceeeeecccceeeEEEEeee----cceEEEEEEeeCC
Q 002906 335 VFVEIVAVKNLPEDH-K-DKGDLFVFFSKSQPDI--FFN-AKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHST 405 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k-~~~~~fvr~~~~q~d~--~~~-~~~~~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~ 405 (867)
+.|.|++++||+... . ...+-||++.-+ ||. ..+ -++...=+.+|-|+..-.|.-.. ...|.|.|..+..
T Consensus 17 L~V~V~~a~nL~~~d~~~g~~dpYVkv~ll-p~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 17 LEITIKACRNLAYGDEKKKKCHPYVKVCLL-PDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEecCCCCccCCCCCCCCeEEEEEEE-eCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 455678999997652 2 456889999843 332 111 11222224567888777777653 3466677766553
Q ss_pred CcccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 406 ~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
+++...||.+.|++.|+--.+..=..-+|+.|
T Consensus 96 -----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 96 -----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred -----CcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 57889999999999999544323345579886
No 58
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=91.94 E-value=1.1 Score=43.96 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=63.9
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceee---eecccceeeEEEEee----ecceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE----ATGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~---~s~~~~k~~~~~qCE----~t~~l~lel~~~~~~ 406 (867)
+.|.|+.++||+... ....+.||++.-+..+.....+.+..+ +.+|-|+..-.|+=. .+..|.|+|..+..
T Consensus 17 L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~- 95 (138)
T cd08408 17 LSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK- 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC-
Confidence 345578999998642 234689999985433321111222222 356777766566543 35688888888765
Q ss_pred cccccCCccccceeeee-----------cccccCCCCcceEeEEEee
Q 002906 407 KIPMTGASKTMGTASLS-----------LQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~-----------~~dll~~~~~Ls~e~w~~l 442 (867)
+++.+.||.++|. |.++++. +...+++|-.|
T Consensus 96 ----~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~-~~~~v~~WH~l 137 (138)
T cd08408 96 ----MKRKEMIGWFSLGLNSSGEEEEEHWNEMKES-KGQQVCRWHTL 137 (138)
T ss_pred ----CCCCcEEEEEEECCcCCCchHHHHHHHHHhC-CCCEEeEeeec
Confidence 5678899998886 6666665 46777777654
No 59
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=91.89 E-value=0.87 Score=43.18 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=66.0
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCC--CcccccccceeeeecccceeeEEEEeee---cceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQP--DIFFNAKQKLTILSKSGMKQVASFQCEA---TGELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~--d~~~~~~~~~~~~s~~~~k~~~~~qCE~---t~~l~lel~~~~~~~~ 408 (867)
+.|.|+.++|||.. .....+-||++..... +....-++.+.=+..|-|++...|+... ..-|.|++..+..
T Consensus 15 l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~--- 91 (131)
T cd04026 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR--- 91 (131)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC---
Confidence 56778999999864 2233567888774321 1121111222223567777777776542 2467888776543
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
+.+...||.+.+++.+++.. ..+.|++|...
T Consensus 92 --~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 92 --TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred --CCCcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 45778999999999999853 67999999554
No 60
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=91.44 E-value=1.1 Score=42.09 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=63.0
Q ss_pred EEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee--cceEEEEEEeeCCCcccccC
Q 002906 336 FVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 336 ~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~k 412 (867)
.|.++..+||+.... ...+-||.+.-.+ ... -++.+.-+.+|-|++...|.... ..-|.|++.-+.. +.
T Consensus 3 ~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-----~~ 74 (123)
T cd04025 3 RCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTL-ETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-----VS 74 (123)
T ss_pred EEEEEEeeCCCCCCCCCCcCceEEEEECC--EEE-eceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-----CC
Confidence 456788889875422 2356788887321 111 11112223467777655555432 3568888876643 45
Q ss_pred CccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 413 ~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
+...||.++|++.++.... ..+.|++|.|..
T Consensus 75 ~~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~ 105 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAK---QEEGWFRLLPDP 105 (123)
T ss_pred CCcEeEEEEEEHHHcccCC---CCCCEEECCCCC
Confidence 6789999999999997542 358899998753
No 61
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=91.44 E-value=1.3 Score=42.24 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=65.3
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCC--cccccccc-eeeeecccceeeEEEEe-e----ecceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPD--IFFNAKQK-LTILSKSGMKQVASFQC-E----ATGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d--~~~~~~~~-~~~~s~~~~k~~~~~qC-E----~t~~l~lel~~~~~~ 406 (867)
+.|.|+.++|||.......+-||++.-+ || ...+-+.+ +.=+.+|.|.+.-.|+- . .+..|.|+|..+..
T Consensus 15 L~V~Vi~A~~L~~~~~~~~DpyVkv~l~-~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~- 92 (122)
T cd08381 15 LFVMVMHAKNLPLLDGSDPDPYVKTYLL-PDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS- 92 (122)
T ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEe-eCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-
Confidence 5666789999986434446789998833 22 11111122 22245778887777764 2 24567777776653
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
+++...||.+.|++.++.... ..+.|++|
T Consensus 93 ----~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 93 ----LVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred ----CcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 567889999999999998542 35889986
No 62
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=91.42 E-value=0.62 Score=50.03 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHhcHHHHhhcccCcCCCcccccCcchhHHHhhhhcChhhHHHHHHHHhCCcCCCCCcc--cccccchhh
Q 002906 50 PALQRAIYRYNACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVV--SSIQGTCRK 127 (867)
Q Consensus 50 ~~L~~AI~RY~~~WlpLla~~~~~~~~~~~lvPPLDV~~VWH~H~LnP~~Y~~dC~~~~Grvid~~~i~--~~~~~~~~~ 127 (867)
.+.++-+.-|.+ |+-|.-... +.+..|.=-||.+||-|.|....|.++|.+.+|+.+.|.-.. .+.++....
T Consensus 58 e~a~qve~e~R~-F~~L~iaag-----k~v~tpS~~VD~~WH~lIlhTReye~fcs~vlg~plhh~p~l~~~~~nq~~~~ 131 (269)
T COG4278 58 ELAEQVEKELRR-FVLLTIAAG-----KRVFTPSGVVDLYWHELILHTREYEKFCSSVLGIPLHHNPLLAKLLNNQDNSF 131 (269)
T ss_pred HHHHHHHHHHHH-HhhhhhhcC-----ccccChhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccChhhhcccCCCchhH
Confidence 355566666666 332322221 134568888999999999999999999999999998775322 222333333
Q ss_pred hhHHHhhhhCCCCcccccc-ccccCccc------cccccc-ccc---hhhhhHHHHHHhhhh-HHHHhccccCCcHHHHH
Q 002906 128 ETEEIWNRLYPEEPYELDL-AKISSEDF------SAELSG-LEK---FTKYDLVSAVKRQSP-FFYQVSRSHFNNDVFLE 195 (867)
Q Consensus 128 ~t~~~W~~~yP~ePfdl~~-~~~~~~~i------~~~~~~-~~~---~is~DLVaAV~RQ~s-F~~qv~sP~~~d~~fL~ 195 (867)
.-++.|....-.|--+... .-+.+++. +.+..+ +++ -..+|++.-|.-|.- .+..+. ..+.....
T Consensus 132 ~lr~tlk~~~r~e~I~P~~~l~s~p~drl~r~Llf~rldakl~i~k~~~t~~~F~~vp~~c~~~~~~~~---r~d~~~av 208 (269)
T COG4278 132 GLRRTLKPACRNEGILPKKALESLPDDRLPRVLLFARLDAKLAIEKGLHTIDEFKYVPEQCAPLIAHFG---RQDGNIAV 208 (269)
T ss_pred HHHHhcchhhhccccCchhhhhcCcccccccchhhhhhhhhhhhhcccchhhHHhhcccccccchhhcc---ccCCceEE
Confidence 3445555443222111000 00000000 000000 000 001233332222210 000000 12222334
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhcccChhhHHHHHHhHhCccccC
Q 002906 196 EAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDMSKTLGKVLEH 254 (867)
Q Consensus 196 rAi~RYkrFL~Lik~~p~~~~~~~LVPTlDIDLVWHTHQL~P~~Y~~Dc~~i~Gr~IdH 254 (867)
+.+...++.+.+...+..+ .+=.|.-+.|.--|--..++-.|-.+|---+|.+.+|
T Consensus 209 ~c~a~f~~~~sgcgS~gg~---~~gs~~g~gd~~~H~~g~~~g~dgs~CgggcGg~gg~ 264 (269)
T COG4278 209 RCEAEFKKWMSGCGSYGGK---NFGSPSGVGDMYFHGCGGHTGGDGSFCGGGCGGFGGD 264 (269)
T ss_pred EehhhhcCccccccccccC---CcCCCcccccccccccccCcCCCccccCCCCCCCCCC
Confidence 4445555555444444332 2456777777777777777777777776666766654
No 63
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=91.06 E-value=2.1 Score=42.76 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=67.0
Q ss_pred EEEEeeeccCCCcc--ccCCCceEEEEeccCCCccccccccee---eeecccceeeEEEEee-ecceEEEEEEeeCCCcc
Q 002906 335 VFVEIVAVKNLPED--HKDKGDLFVFFSKSQPDIFFNAKQKLT---ILSKSGMKQVASFQCE-ATGELLFELVSHSTSKI 408 (867)
Q Consensus 335 v~~~iv~~~n~p~~--~k~~~~~fvr~~~~q~d~~~~~~~~~~---~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~ 408 (867)
+.|.|+.++||+.. .....+=||++.- .+|.-...+++.. =+.+|-|.+.-.|.-. ....|.|+|..+.+
T Consensus 31 L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L-lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~--- 106 (146)
T cd04028 31 LEVEVIRARGLVQKPGSKVLPAPYVKVYL-LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG--- 106 (146)
T ss_pred EEEEEEEeeCCCcccCCCCCcCCeEEEEE-ECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC---
Confidence 55667899999763 2223577999883 3443211122222 2356777766666654 45677788774332
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEeeccCCC
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 447 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~ 447 (867)
.+++...||.+.|+++++-... ....|++|.|...
T Consensus 107 -~~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 -RMDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPTSS 141 (146)
T ss_pred -CCCCCceEEEEEEEcccccCCC---CceeEEecCCccc
Confidence 2567789999999999984322 3578999988754
No 64
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=90.85 E-value=3.8 Score=39.98 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=71.8
Q ss_pred EEEEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-e-cceEEEEEEeeCCCccc
Q 002906 333 VEVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 409 (867)
Q Consensus 333 vev~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~-t~~l~lel~~~~~~~~~ 409 (867)
=.+.|.+++.+||+.... ...+-||.+.-.+ ... -++.+.-+.+|-|+..-.|+.. + ..-|.||+..+..
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~-kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~---- 87 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEH-KTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF---- 87 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--Eee-eccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC----
Confidence 346677889999975422 3367788877321 111 1111222346777766666653 2 3568888886653
Q ss_pred ccCCccccceeeeecccccCC--CCcceEeEEEeeccCCCCCCCCCeeEEEEEee
Q 002906 410 MTGASKTMGTASLSLQNFISP--ISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (867)
Q Consensus 410 ~~k~sk~~g~~s~~~~dll~~--~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~ 462 (867)
+.+..+||.+.|++.+|+.+ ...-...+|+.|... ..-++++.++|
T Consensus 88 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~------~~g~i~l~~~~ 135 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEV------PTGEVVVKLDL 135 (136)
T ss_pred -CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccc------cceeEEEEEEe
Confidence 45668999999999999972 234456788887433 22466666665
No 65
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=90.85 E-value=3.1 Score=39.29 Aligned_cols=102 Identities=14% Similarity=0.228 Sum_probs=63.2
Q ss_pred EEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccce-eeeecccceeeEEEEeee-cceEEEEEEeeCCCccccc
Q 002906 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~-~~~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~~~~~ 411 (867)
++|.|+..+||+.... ...+-||.+.-.. ..+ .+.++ .=+.+|-|.+...|..-. ..-|.|++..+.. +
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~--~~~-~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~-----~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN--EVI-IRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDT-----L 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC--Eee-eeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCC-----C
Confidence 5677889999976532 2356788776321 111 11121 113456677655555533 3577777765553 3
Q ss_pred CCccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
.+...+|.+.|+.+++.... . .++.|++|.+..
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~-~-~~~~W~~L~~~~ 106 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHP-R-GIDGWMNLTEVD 106 (121)
T ss_pred CCCCEEEEEEEcHHHhccCC-C-CCCcEEECeeeC
Confidence 46788999999999887532 2 368999998753
No 66
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=90.84 E-value=1.3 Score=37.24 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=61.6
Q ss_pred EEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee--cceEEEEEEeeCCCcccccCC
Q 002906 337 VEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 337 ~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~k~ 413 (867)
|.|+..++++.. .....+.||+++-.. .....++...-+..+-|+....|.... ...|.||+..+.. +..
T Consensus 3 v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-----~~~ 75 (102)
T cd00030 3 VTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-----FSK 75 (102)
T ss_pred EEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-----CCC
Confidence 567888888753 334578999988543 111111122222466677666666665 6789999888875 346
Q ss_pred ccccceeeeecccccCCCCcceEeEEEee
Q 002906 414 SKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 414 sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
.+++|.+.+++.++.. ..-..+.|++|
T Consensus 76 ~~~ig~~~~~l~~l~~--~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLD--SGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhh--cCCcCcceecC
Confidence 7899999999999982 12344556553
No 67
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.27 Score=46.40 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=45.7
Q ss_pred CCCCcceeec--CCcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce
Q 002906 567 SKEGHLFELL--GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA 620 (867)
Q Consensus 567 s~dg~l~El~--~~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea 620 (867)
-.||.-|+++ .++|++|-.|.+.. +++- +..+..++.. ..+++|+.+||+.
T Consensus 31 L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdeg-v~qmsvGeka--kLti~pd~aYG~~ 86 (108)
T KOG0544|consen 31 LQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEG-VAQMSVGEKA--KLTISPDYAYGPR 86 (108)
T ss_pred ecCCcEeecccccCCCeeEEecCcceeechhhc-chhccccccc--eeeeccccccCCC
Confidence 4578889988 58999999999988 8888 8889999999 9999999999998
No 68
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=89.96 E-value=2.8 Score=38.79 Aligned_cols=99 Identities=11% Similarity=0.242 Sum_probs=64.1
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEeee-cceEEEEEEeeCCCcccccC
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~~~~~k 412 (867)
+.|.|+..+|||... ....+-||++...+. . . -++.+.=+..|-|++...|.... ...|.|++..+.. +.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~-~-~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~-----~~ 74 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNA-R-L-QTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDK-----DK 74 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCE-e-e-ecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCC-----CC
Confidence 345678889998542 223577888874321 1 1 11111113467777777887753 5678888876553 34
Q ss_pred CccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 413 ~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
+..+||.+.+++.++... .++|+.|.+..
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~~ 103 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDKK 103 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECcccC
Confidence 678999999999998754 26899997653
No 69
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=89.94 E-value=1.9 Score=40.38 Aligned_cols=90 Identities=10% Similarity=0.135 Sum_probs=59.3
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCC--cccccccceeeeecccceeeEEEEe---e--ecceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPD--IFFNAKQKLTILSKSGMKQVASFQC---E--ATGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d--~~~~~~~~~~~~s~~~~k~~~~~qC---E--~t~~l~lel~~~~~~ 406 (867)
+.|.|+.++||+... ....+.||++..+... ....-++.+.-+.+|.|++...|+- + ...-|.|++..+..
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~- 95 (123)
T cd04035 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR- 95 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC-
Confidence 567789999998642 2446899998854221 1111222233356788888777752 1 13468888876653
Q ss_pred cccccCCccccceeeeecccccCC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISP 430 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~ 430 (867)
+ ....||.+.|++.+|...
T Consensus 96 ----~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 ----F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred ----c-CCeeEEEEEEEcccCCCC
Confidence 4 678999999999999965
No 70
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=89.92 E-value=1.9 Score=42.29 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=64.7
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCCC--ccccccccee-eeecccceeeEEEEee----ecceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPD--IFFNAKQKLT-ILSKSGMKQVASFQCE----ATGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d--~~~~~~~~~~-~~s~~~~k~~~~~qCE----~t~~l~lel~~~~~~ 406 (867)
+.|.|+.++||+.. .....+-||++.-+ +| ...+-+.++. =+.+|-|+..-.|.-. ....|.|+|..+..
T Consensus 17 L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~-~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~- 94 (136)
T cd08406 17 LTVVVVKARNLVWDNGKTTADPFVKVYLL-QDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE- 94 (136)
T ss_pred EEEEEEEeeCCCCccCCCCCCeEEEEEEE-eCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC-
Confidence 56667899999864 23346889999843 22 1111122211 2356778877677654 24567777777653
Q ss_pred cccccCCccccceeeee----------cccccCCCCcceEeEEEee
Q 002906 407 KIPMTGASKTMGTASLS----------LQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~----------~~dll~~~~~Ls~e~w~~l 442 (867)
+.+...||.+.|. |+|++.. +...+++|=.|
T Consensus 95 ----~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~-~~~~v~~WH~l 135 (136)
T cd08406 95 ----DGKTPNVGHVIIGPAASGMGLSHWNQMLAS-LRKPVAMWHPL 135 (136)
T ss_pred ----CCCCCeeEEEEECCCCCChhHHHHHHHHHC-CCCeeeEeeec
Confidence 4567889999987 7777776 47777777554
No 71
>PLN03008 Phospholipase D delta
Probab=89.79 E-value=2.3 Score=53.10 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=69.2
Q ss_pred ecccceeeEEEEee-ecceEEEEEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeE
Q 002906 378 SKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISL 456 (867)
Q Consensus 378 s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~l 456 (867)
.+|-|.+.-+|+|. +...|+|+|.-.-. +. ..+||.++|++++|+.-. .+++||+|...++.-...--+|
T Consensus 100 ~NPvWNE~F~f~vah~~s~L~f~VkD~D~-----~g-aD~IG~a~IPL~~L~~Ge---~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 100 QEPLWDEKFNISIAHPFAYLEFQVKDDDV-----FG-AQIIGTAKIPVRDIASGE---RISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred CCCCcceeEEEEecCCCceEEEEEEcCCc-----cC-CceeEEEEEEHHHcCCCC---ceEEEEEccccCCCCCCCCcEE
Confidence 46888999999998 56789998877543 33 479999999999998653 5899999988877444444699
Q ss_pred EEEEeecCCCCCceEEEee
Q 002906 457 RIAVSFTIPTLAPHLLRMV 475 (867)
Q Consensus 457 rv~~S~TpPv~ApylL~~v 475 (867)
||.+.++|=-+-|+-=+-|
T Consensus 171 ~v~lqf~pv~~~~~~~~gv 189 (868)
T PLN03008 171 FIDMKFTPFDQIHSYRCGI 189 (868)
T ss_pred EEEEEEEEccccccccccc
Confidence 9999999987777554444
No 72
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=89.76 E-value=6.1 Score=37.61 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=70.0
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-ecceEEEEEEeeCCCcccccC
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 412 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~k 412 (867)
+-|.|+++++|+.. .....+-||.+.... .. + -++...-+.++-|+..-.|+.. +...|.|||.-+.. ++
T Consensus 5 ~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~-~-kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~-----~~ 76 (126)
T cd04046 5 TQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ES-V-RSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNL-----LC 76 (126)
T ss_pred EEEEEEeCcCCCCCCCCCCcCccEEEEECC-EE-E-EeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCC-----CC
Confidence 44556888998754 222367788886321 11 1 1111222346777777677654 56789999998753 23
Q ss_pred CccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCe-eEEEEEeecC
Q 002906 413 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPI-SLRIAVSFTI 464 (867)
Q Consensus 413 ~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~-~lrv~~S~Tp 464 (867)
...||.++|+++++.. ...+||+|.......+.+.. .|++.+++++
T Consensus 77 -d~~lG~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 77 -DEFLGQATLSADPNDS-----QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCceEEEEEecccCCC-----cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 5899999999998642 34578888543322233333 6666666654
No 73
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=89.74 E-value=2.2 Score=39.71 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=61.0
Q ss_pred EEEEeeeccCCCccc--cCCCceEEEEeccCCCcccccccceee---eecccceeeEEEEeee----cceEEEEEEeeCC
Q 002906 335 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHST 405 (867)
Q Consensus 335 v~~~iv~~~n~p~~~--k~~~~~fvr~~~~q~d~~~~~~~~~~~---~s~~~~k~~~~~qCE~----t~~l~lel~~~~~ 405 (867)
+.|.|+.++|||... ....+-||++.-+ ++.....+.+..+ +..|-|++...|.=.. ...|.|+|..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~-~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLL-PDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred EEEEEEEecCCCCcCCCCCCCCcEEEEEEe-cCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 456678999998643 2346789998643 2211111112222 3467777665554221 3468888776543
Q ss_pred CcccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 406 ~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
+++...||.+.|+++++.-. -..+.|+.|
T Consensus 95 -----~~~~~~iG~~~i~l~~l~~~---~~~~~w~~l 123 (123)
T cd08521 95 -----FGRNTFLGEVEIPLDSWDLD---SQQSEWYPL 123 (123)
T ss_pred -----CcCCceeeEEEEeccccccc---CCCccEEEC
Confidence 45668999999999999532 246889875
No 74
>PLN02270 phospholipase D alpha
Probab=89.48 E-value=2 Score=53.36 Aligned_cols=89 Identities=10% Similarity=0.244 Sum_probs=72.4
Q ss_pred ecccceeeEEEEee-ecceEEEEEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeE
Q 002906 378 SKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISL 456 (867)
Q Consensus 378 s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~l 456 (867)
.++.|.+.-+++|- +...++|.|-.+-. =.+.+||.+.|+-++++.-. .+++||+|...++..-.....|
T Consensus 71 ~~p~w~e~f~i~~ah~~~~v~f~vkd~~~------~g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~~~~~~~ 141 (808)
T PLN02270 71 KNPRWYESFHIYCAHMASNIIFTVKDDNP------IGATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPIHGGSKI 141 (808)
T ss_pred CCCccccceEEeeccCcceEEEEEecCCc------cCceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcCCCCCEE
Confidence 37889999999998 67889998865542 25569999999999999764 4999999987776655566799
Q ss_pred EEEEeecCCCCCceEEEee
Q 002906 457 RIAVSFTIPTLAPHLLRMV 475 (867)
Q Consensus 457 rv~~S~TpPv~ApylL~~v 475 (867)
||.+-+||=.+.|+.=+-|
T Consensus 142 ~~~~~f~~~~~~~~~~~gv 160 (808)
T PLN02270 142 HVKLQYFEVTKDRNWGRGI 160 (808)
T ss_pred EEEEEEEEcccCcchhccc
Confidence 9999999988888766665
No 75
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=89.47 E-value=0.96 Score=42.09 Aligned_cols=73 Identities=16% Similarity=0.309 Sum_probs=53.5
Q ss_pred ecccceeeEEEEeee--cceEEEEEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCee
Q 002906 378 SKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPIS 455 (867)
Q Consensus 378 s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~ 455 (867)
.+|-|.+...|.+.. ...|.|++..+.. + +...||.+.|+++++++.. . ..+.||.|.. .+.=.
T Consensus 36 ~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-----~-~d~~iG~~~v~L~~l~~~~-~-~~~~w~~L~~------~~~G~ 101 (111)
T cd04052 36 NNPSWNASTEFLVTDRRKSRVTVVVKDDRD-----R-HDPVLGSVSISLNDLIDAT-S-VGQQWFPLSG------NGQGR 101 (111)
T ss_pred CCCccCCceEEEecCcCCCEEEEEEEECCC-----C-CCCeEEEEEecHHHHHhhh-h-ccceeEECCC------CCCCE
Confidence 366788777888763 3458888766553 4 6789999999999998752 2 3789999974 13356
Q ss_pred EEEEEeecC
Q 002906 456 LRIAVSFTI 464 (867)
Q Consensus 456 lrv~~S~Tp 464 (867)
|++.+.++|
T Consensus 102 i~~~~~~~p 110 (111)
T cd04052 102 IRISALWKP 110 (111)
T ss_pred EEEEEEEec
Confidence 788888876
No 76
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=89.46 E-value=1.9 Score=39.64 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=57.7
Q ss_pred EEEeeeccCCCccc-cCCCceEEEEeccCCC---cccccccceeeeecccceeeEEEEee------ecceEEEEEEeeCC
Q 002906 336 FVEIVAVKNLPEDH-KDKGDLFVFFSKSQPD---IFFNAKQKLTILSKSGMKQVASFQCE------ATGELLFELVSHST 405 (867)
Q Consensus 336 ~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d---~~~~~~~~~~~~s~~~~k~~~~~qCE------~t~~l~lel~~~~~ 405 (867)
.+.++..++|+... ....+-||++....-+ ....-++.+.-+.+|.|+ ...|.++ +...|.|||.-+..
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 34466888887542 2236789998754433 111122222234567777 4666654 26789999998864
Q ss_pred CcccccCCccccceeeeecccccCC
Q 002906 406 SKIPMTGASKTMGTASLSLQNFISP 430 (867)
Q Consensus 406 ~~~~~~k~sk~~g~~s~~~~dll~~ 430 (867)
+.+...||.+.+++++|+..
T Consensus 82 -----~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 -----SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred -----CCCCcEEEEEEEEHHHHhcC
Confidence 45779999999999999943
No 77
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=89.30 E-value=2.2 Score=40.90 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=52.9
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCc--ccccccceeeeecccceeeEEEEeeec----ceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDI--FFNAKQKLTILSKSGMKQVASFQCEAT----GELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~--~~~~~~~~~~~s~~~~k~~~~~qCE~t----~~l~lel~~~~~~~ 407 (867)
+.|.+++++||+... ....+-||++....... ...-++.+.=+.+|.|++.-.|..... ..|.|||.-+..
T Consensus 17 l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 94 (136)
T cd08402 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR-- 94 (136)
T ss_pred EEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC--
Confidence 556678899998542 22367799987532111 111111122234677887777776532 368888887663
Q ss_pred ccccCCccccceeeeeccc
Q 002906 408 IPMTGASKTMGTASLSLQN 426 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~d 426 (867)
+.+...||.++|+...
T Consensus 95 ---~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 95 ---IGKNDPIGKVVLGCNA 110 (136)
T ss_pred ---CCCCceeEEEEECCcc
Confidence 4567899999996543
No 78
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=88.84 E-value=9 Score=35.68 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=66.0
Q ss_pred EEEEEEeeeccCCCccc---cCCCceEEEEeccCCCc--ccccccce-eeee-cccceeeEEEEee-e-cceEEEEEEee
Q 002906 333 VEVFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDI--FFNAKQKL-TILS-KSGMKQVASFQCE-A-TGELLFELVSH 403 (867)
Q Consensus 333 vev~~~iv~~~n~p~~~---k~~~~~fvr~~~~q~d~--~~~~~~~~-~~~s-~~~~k~~~~~qCE-~-t~~l~lel~~~ 403 (867)
+.+-|.|+.++|||... ....+.||.++-...+. --..+.++ .-.+ ++-|+..-.|+.. + ..-|.|++..+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 35677889999998543 23467898887543221 11122233 2223 7777766677755 2 34567777665
Q ss_pred CCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCC
Q 002906 404 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 448 (867)
Q Consensus 404 ~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~ 448 (867)
.. + +.+.||.+.+++.+|..- .+|++|...++.
T Consensus 82 ~~-----~-~~~~iG~~~~~l~~l~~g------~~~~~l~~~~~~ 114 (128)
T cd00275 82 DS-----G-DDDFLGQACLPLDSLRQG------YRHVPLLDSKGE 114 (128)
T ss_pred CC-----C-CCcEeEEEEEEhHHhcCc------eEEEEecCCCCC
Confidence 53 3 668999999999999753 378999766554
No 79
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=88.84 E-value=5.7 Score=38.25 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=68.4
Q ss_pred EEEEEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEE-eee-c---------ceEEEEEE
Q 002906 334 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQ-CEA-T---------GELLFELV 401 (867)
Q Consensus 334 ev~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~q-CE~-t---------~~l~lel~ 401 (867)
|+.|.|+..+|||.. .....+-||.+.-.. .-. -++.+.-+.++-|++.-.|. .+. + ..+.|||.
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~-kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQ-ETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eee-EeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 466778889999864 333467788877321 111 11111113466788776665 221 1 35788888
Q ss_pred eeCCCcccccCCccccceeee-ecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEee
Q 002906 402 SHSTSKIPMTGASKTMGTASL-SLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 462 (867)
Q Consensus 402 ~~~~~~~~~~k~sk~~g~~s~-~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~ 462 (867)
.+.. +++...||.+.| +...+..+.+.-...+|++|.....+.+ +|-|++++
T Consensus 79 d~d~-----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~G----eil~~~~~ 131 (135)
T cd04017 79 DQDS-----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAG----ELLAAFEL 131 (135)
T ss_pred eCcC-----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchh----heeEEeEE
Confidence 7653 356689999997 4433433334557789999976644322 44444444
No 80
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=88.25 E-value=3.4 Score=35.30 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=61.0
Q ss_pred EEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceee-eecccceeeEEEEeee--cceEEEEEEeeCCCccccc
Q 002906 336 FVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI-LSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 336 ~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~-~s~~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~ 411 (867)
.+.|+..++++.... ...+.||+++-...+ ....+.++.- +.++-|+....|++-. ...|.|++..+.. .
T Consensus 3 ~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-----~ 76 (101)
T smart00239 3 TVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-----F 76 (101)
T ss_pred EEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-----c
Confidence 456788888876533 347899998855433 1112222222 2367777788888875 6788888877764 2
Q ss_pred CCccccceeeeecccccCCC
Q 002906 412 GASKTMGTASLSLQNFISPI 431 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~ 431 (867)
.....+|.+++++.++....
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 36789999999999998764
No 81
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=87.13 E-value=5.6 Score=39.20 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=65.6
Q ss_pred EEeeeccCCCccccCCCceEEEEeccCCCcc---------ccccccee-eeecccc-eeeEEEEeeecceEEEEEEeeCC
Q 002906 337 VEIVAVKNLPEDHKDKGDLFVFFSKSQPDIF---------FNAKQKLT-ILSKSGM-KQVASFQCEATGELLFELVSHST 405 (867)
Q Consensus 337 ~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~---------~~~~~~~~-~~s~~~~-k~~~~~qCE~t~~l~lel~~~~~ 405 (867)
|.++.++||+.......+=||.+.-..-+.- -..+.++. =+.+|.| ...-.|...+...|.||+.-+..
T Consensus 5 ~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~D~~~ 84 (137)
T cd08691 5 LSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVKDKFA 84 (137)
T ss_pred EEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEEecCC
Confidence 4467788887442233567777764311111 01111221 1246777 77788888778889999976432
Q ss_pred CcccccCC--ccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 406 SKIPMTGA--SKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 406 ~~~~~~k~--sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
. .+. ...||.+.|++.+|+...-.--.+.|+.|...
T Consensus 85 ~----~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 85 K----SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred C----CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 1 121 47999999999999977434458889998654
No 82
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=86.86 E-value=4.1 Score=41.04 Aligned_cols=101 Identities=15% Similarity=0.318 Sum_probs=63.0
Q ss_pred cCCceEEEEEEEeeeccCCCccc-cCCCceEEEEeccCC--------------------------Ccccccccceeeeec
Q 002906 327 IPDLKIVEVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQP--------------------------DIFFNAKQKLTILSK 379 (867)
Q Consensus 327 l~~r~vvev~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~--------------------------d~~~~~~~~~~~~s~ 379 (867)
-+|..+++| .|++.+||+... .-..+-||++.-.+. ...+.-++...-+.+
T Consensus 24 ~~~~~~L~V--~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 24 EPPIFVLKV--TVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred CCCeEEEEE--EEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 445555544 458889987532 223567887752211 011111111222356
Q ss_pred ccceeeEEEEeee--cceEEEEEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 380 SGMKQVASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 380 ~~~k~~~~~qCE~--t~~l~lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
|-|++...|.... +.-|.|++.-+. ..+||.++|+.+++... -++.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~~----~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPSC----GLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCCC----CCCCeEeC
Confidence 7888778888763 567888887664 57899999999999932 25999986
No 83
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=86.09 E-value=4.9 Score=39.16 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=63.4
Q ss_pred ceEEEEEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEe-e--ecceEEEEEEeeCCC
Q 002906 330 LKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQC-E--ATGELLFELVSHSTS 406 (867)
Q Consensus 330 r~vvev~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qC-E--~t~~l~lel~~~~~~ 406 (867)
+-+-.+.|-|++.+||+.......+-||++....- ..-++.+.-+.++.|++...|+- + ....|.|||.-+..
T Consensus 25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~- 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN- 100 (127)
T ss_pred CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-
Confidence 44556778889999998644344678999874321 11122222234688888778863 3 36788899888764
Q ss_pred cccccCCccccceeeeecccccCC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISP 430 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~ 430 (867)
+.+..+||.++|++....+.
T Consensus 101 ----~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 101 ----GWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred ----CCCCCeeEEEEEEecCCcee
Confidence 45778999999999977754
No 84
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=85.58 E-value=5 Score=38.46 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=57.4
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCCCc-ccc-cccceeeeecccceeeEEEEe--e--ecceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDI-FFN-AKQKLTILSKSGMKQVASFQC--E--ATGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~-~~~-~~~~~~~~s~~~~k~~~~~qC--E--~t~~l~lel~~~~~~~ 407 (867)
+.|.++.++||+.. .....+.||+++-...+. ... -++.+.=+.+|.|+..-.|+= + .+..|.|+|..+..
T Consensus 17 L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~-- 94 (136)
T cd08405 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR-- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC--
Confidence 55667899999753 223467899887432221 111 112222234677775544442 1 13568888888763
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeec
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 443 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~ 443 (867)
+++...||.++|++.+.. .-.+.|++|.
T Consensus 95 ---~~~~~~lG~~~i~~~~~~-----~~~~~w~~~~ 122 (136)
T cd08405 95 ---LSRNDLIGKIYLGWKSGG-----LELKHWKDML 122 (136)
T ss_pred ---CCCCcEeEEEEECCccCC-----chHHHHHHHH
Confidence 456689999999886641 1245555553
No 85
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=85.55 E-value=8.1 Score=37.31 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=63.2
Q ss_pred EEEeeeccCCCccccCCCceEEEEecc---CCCcccccccce-eeeecccceeeEEEEeee-----cceEEEEEEeeCCC
Q 002906 336 FVEIVAVKNLPEDHKDKGDLFVFFSKS---QPDIFFNAKQKL-TILSKSGMKQVASFQCEA-----TGELLFELVSHSTS 406 (867)
Q Consensus 336 ~~~iv~~~n~p~~~k~~~~~fvr~~~~---q~d~~~~~~~~~-~~~s~~~~k~~~~~qCE~-----t~~l~lel~~~~~~ 406 (867)
-|.++.++|||.......+-||.+.-. .+++.-+-+.++ .=+.+|-|+..-.|.--. ...|.|+|.-+.
T Consensus 3 ~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d-- 80 (120)
T cd08395 3 TVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC-- 80 (120)
T ss_pred EEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec--
Confidence 456789999986533345778887732 223211111111 112356777666666532 134666666653
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
. +++..+||.+.|+++++.... ..+.|++|.+.
T Consensus 81 ~---~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~ 113 (120)
T cd08395 81 F---ARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRR 113 (120)
T ss_pred c---cCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCc
Confidence 2 567889999999999999654 47889999665
No 86
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=85.47 E-value=5.5 Score=37.86 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=62.9
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCC-cccccc-cceeeeecccceeeEEEEeee----cceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPD-IFFNAK-QKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d-~~~~~~-~~~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~ 407 (867)
+.|.|+.++|||... ....+-||++.-..-+ .....+ +...-+.+|.|+....|.... +..|.|+|..+..
T Consensus 15 L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~-- 92 (133)
T cd08384 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI-- 92 (133)
T ss_pred EEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC--
Confidence 667789999998642 2346789998854211 111111 122224568888777776652 3568888886543
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
+.+...||.+.|++.+. .-..+.|+++.+.
T Consensus 93 ---~~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~ 122 (133)
T cd08384 93 ---GKSNDYIGGLQLGINAK-----GERLRHWLDCLKN 122 (133)
T ss_pred ---CCCccEEEEEEEecCCC-----CchHHHHHHHHhC
Confidence 45678999999998751 2245778877443
No 87
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=85.33 E-value=17 Score=34.67 Aligned_cols=104 Identities=11% Similarity=0.260 Sum_probs=66.3
Q ss_pred EEEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccce-eeeecccceeeEEEEee-ecceEEEEEEeeCCCcc-c
Q 002906 334 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCE-ATGELLFELVSHSTSKI-P 409 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~-~~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~-~ 409 (867)
++.|.|++.++||... ....+-||++.-.+ .. .+.+. .=+.+|-|.....|+|. +...|.|++..+..... +
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~--~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TK--KRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--Ee--eecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 3566789999998542 23356788887321 11 11111 11356778888899995 45678888876543210 0
Q ss_pred -----ccCCccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 410 -----MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 410 -----~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
....-..||.+.|++.++... .+.|++|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~ 114 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRT 114 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCC
Confidence 013577999999999987532 36899998874
No 88
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=85.10 E-value=0.84 Score=40.90 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCcceeec--CCcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce
Q 002906 569 EGHLFELL--GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA 620 (867)
Q Consensus 569 dg~l~El~--~~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea 620 (867)
++..|+.+ .+.|++|..|.+.. ||.. +.++..|+.. .|.++|+.+||+.
T Consensus 21 ~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~a-l~~m~~Ge~~--~~~vp~~~ayg~~ 74 (94)
T PF00254_consen 21 DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEA-LIGMKVGEKR--EFYVPPELAYGEK 74 (94)
T ss_dssp TSEEEEETTTTTSEEEEETTSSSSSHHHHHH-HTTSBTTEEE--EEEEEGGGTTTTT
T ss_pred CCcEEEEeeecCcceeeeeccCccccchhhh-cccccCCCEe--eeEeCChhhcCcc
Confidence 78889988 78999999998777 9999 9999999999 9999999999987
No 89
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=85.04 E-value=5.1 Score=40.29 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=66.6
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcc-cccccce-eeeecccceeeEEEEeee-----cceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIF-FNAKQKL-TILSKSGMKQVASFQCEA-----TGELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~-~~~~~~~-~~~s~~~~k~~~~~qCE~-----t~~l~lel~~~~~~ 406 (867)
+.|.|+.++|||... ....+-||.+.-+..+.- ...+.++ .-+.+|-|++...|+.-+ ..-|.|+|..+..
T Consensus 29 L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~- 107 (162)
T cd04020 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK- 107 (162)
T ss_pred EEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC-
Confidence 677789999998653 234678998864432211 1111221 223568888887887532 2357777776653
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEeecc
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 444 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~ 444 (867)
+++...||.+.|++.++.... ..+.|++|..
T Consensus 108 ----~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~~ 138 (162)
T cd04020 108 ----LSSNDFLGGVRLGLGTGKSYG---QAVDWMDSTG 138 (162)
T ss_pred ----CCCCceEEEEEEeCCccccCC---CccccccCCh
Confidence 567889999999999987542 4689999853
No 90
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=85.01 E-value=0.64 Score=47.84 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=44.4
Q ss_pred CCCcceeec-CCcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce
Q 002906 568 KEGHLFELL-GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA 620 (867)
Q Consensus 568 ~dg~l~El~-~~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea 620 (867)
.+|.+|+.+ +..|+.|..|.+.. |++. +..+.+|+.+ .|.++|+.+||++
T Consensus 101 ~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~-L~~Mk~Ge~~--~~~iP~~~AYG~~ 154 (177)
T TIGR03516 101 LDGDVIYSEEELGPQTYKVDQQDLFSGLRDG-LKLMKEGETA--TFLFPSHKAYGYY 154 (177)
T ss_pred CCCCEEEeCCCCCCEEEEeCCcchhHHHHHH-HcCCCCCCEE--EEEECHHHcCCCC
Confidence 478888888 67799999998655 9998 9999999999 9999999999998
No 91
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=84.67 E-value=6.5 Score=37.59 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=59.6
Q ss_pred EEEEeeeccCCCcccc-CCCceEEEEeccCCC-cccccccce-eeeecccceeeEEEEeee----cceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD-IFFNAKQKL-TILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d-~~~~~~~~~-~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~ 407 (867)
+.|.|+.+++|+.... ...+-||++...... .....+.++ .=+.+|.|++.-.|.... ...|.|+|.-+..
T Consensus 16 L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~-- 93 (134)
T cd08403 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR-- 93 (134)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 5566789999986422 336789988743211 111112222 113467888777777653 2358888887653
Q ss_pred ccccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 408 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
+++...||.+.|+... +.-..+.|+++..+
T Consensus 94 ---~~~~~~IG~~~l~~~~-----~~~~~~~w~~~~~~ 123 (134)
T cd08403 94 ---VGHNELIGVCRVGPNA-----DGQGREHWNEMLAN 123 (134)
T ss_pred ---CCCCceeEEEEECCCC-----CCchHHHHHHHHHC
Confidence 4577899999997541 12234566666433
No 92
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=84.39 E-value=5.6 Score=38.47 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=61.9
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCCCcc-cccccceee---eecccceeeEEEEee----ecceEEEEEEeeCC
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIF-FNAKQKLTI---LSKSGMKQVASFQCE----ATGELLFELVSHST 405 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~-~~~~~~~~~---~s~~~~k~~~~~qCE----~t~~l~lel~~~~~ 405 (867)
+.|.|+.++||+.. .+...+-||++. +.||.- .+.+.+..+ +.+|-++..-.|.=. ....|.|.|..+..
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~-Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVA-LLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEE-EccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 45667899999864 333468999998 344431 111122222 356677755555432 24566666666542
Q ss_pred CcccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 406 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 406 ~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
+++...||.+.|++.|+-.... ...+|++|
T Consensus 95 -----~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 95 -----DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred -----CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 5678899999999999933322 36788875
No 93
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=83.95 E-value=5.4 Score=39.62 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=59.8
Q ss_pred EEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-ecceEEEEEEeeCCCcccccCC
Q 002906 335 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~t~~l~lel~~~~~~~~~~~k~ 413 (867)
+.|.+++.+||+.......+-||+++-.+ ... -++.+.-+.+|-|+....|.-. +...|.||++-+.. +.+
T Consensus 4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~--~~~-kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~-----~~~ 75 (145)
T cd04038 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGN--QKV-KTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDT-----FSK 75 (145)
T ss_pred EEEEEEeeECCCCCCCCCcCcEEEEEECC--EEE-EeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCC-----CCC
Confidence 55678899999854333467898887421 111 1122222356778776667655 56788999887763 456
Q ss_pred ccccceeeeecccccCCC
Q 002906 414 SKTMGTASLSLQNFISPI 431 (867)
Q Consensus 414 sk~~g~~s~~~~dll~~~ 431 (867)
...||.+.|++++|+...
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 689999999999999774
No 94
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=82.55 E-value=7.7 Score=32.66 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=51.1
Q ss_pred EEeeeccCCCcc-ccCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee--ecceEEEEEEeeCCCcccccCC
Q 002906 337 VEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--ATGELLFELVSHSTSKIPMTGA 413 (867)
Q Consensus 337 ~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE--~t~~l~lel~~~~~~~~~~~k~ 413 (867)
|.|++++||+.. .....+.||+++-.........++...=+..+.|.+...|.+. ....|.|+|..... +.+
T Consensus 3 v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-----~~~ 77 (85)
T PF00168_consen 3 VTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-----FGK 77 (85)
T ss_dssp EEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-----SSS
T ss_pred EEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-----CCC
Confidence 557899999873 3345789999985543321011111222245677788888855 35679999997775 456
Q ss_pred cccccee
Q 002906 414 SKTMGTA 420 (867)
Q Consensus 414 sk~~g~~ 420 (867)
.++||.+
T Consensus 78 ~~~iG~~ 84 (85)
T PF00168_consen 78 DELIGEV 84 (85)
T ss_dssp EEEEEEE
T ss_pred CCEEEEE
Confidence 7888875
No 95
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=82.47 E-value=4.8 Score=40.40 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=58.1
Q ss_pred EEEeeeccCCCccc---------------cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-e--cceEE
Q 002906 336 FVEIVAVKNLPEDH---------------KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A--TGELL 397 (867)
Q Consensus 336 ~~~iv~~~n~p~~~---------------k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~--t~~l~ 397 (867)
.|.|.++++||... +...+-||++.-. ..+ . -++.+.-+.++.|.+...|..- | ..-|+
T Consensus 3 ~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-g~~-~-kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 3 IFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-GQK-V-KTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred EEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-CEe-e-ecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 45678888888642 1234678887721 111 1 1222223457889988888742 3 56889
Q ss_pred EEEEeeCCCcccccCCccccceeeeecccccCCC
Q 002906 398 FELVSHSTSKIPMTGASKTMGTASLSLQNFISPI 431 (867)
Q Consensus 398 lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~ 431 (867)
|||.-+.. +.+..++|+++|+++++....
T Consensus 80 ~~v~D~d~-----~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 80 IQIRDWDR-----VGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEECCC-----CCCCCEEEEEEEeHHHhccCC
Confidence 99988764 346789999999999998753
No 96
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=82.43 E-value=24 Score=33.55 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=60.4
Q ss_pred EEEeeeccCCCcc--ccCCCceEEEEeccCCCcccccccce-eeeecccceeeEEEEeee-cceEEEEEEeeCCCccccc
Q 002906 336 FVEIVAVKNLPED--HKDKGDLFVFFSKSQPDIFFNAKQKL-TILSKSGMKQVASFQCEA-TGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 336 ~~~iv~~~n~p~~--~k~~~~~fvr~~~~q~d~~~~~~~~~-~~~s~~~~k~~~~~qCE~-t~~l~lel~~~~~~~~~~~ 411 (867)
.|.++..+|||.. .....+-||.+.-. -.... +.++ .=+.+|-|.....|..-. ...|.|++..+.. +
T Consensus 3 ~v~v~~a~~L~~~~~~~g~sDpYv~v~l~-~~~~~--kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~-----~ 74 (121)
T cd08401 3 KIKIGEAKNLPPRSGPNKMRDCYCTVNLD-QEEVF--RTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDV-----L 74 (121)
T ss_pred EEEEEEccCCCCCCCCCCCcCcEEEEEEC-CccEE--EeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCC-----C
Confidence 3557888999864 11234668887531 11111 1111 113466677565666532 3566666655542 4
Q ss_pred CCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
++...||.++|++++|.... ..+.|++|.|.
T Consensus 75 ~~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~ 105 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKYY---GKDTWFPLQPV 105 (121)
T ss_pred CCCceEEEEEEEHHHccCCC---CcEeeEEEEcc
Confidence 56688999999999998642 36999999875
No 97
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=81.95 E-value=11 Score=36.30 Aligned_cols=102 Identities=11% Similarity=0.148 Sum_probs=58.6
Q ss_pred EEEEEeeeccCCCccc-cCCCceEEEEeccCCCc-ccccccc-eeeeecccceeeEEEEeee----cceEEEEEEeeCCC
Q 002906 334 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDI-FFNAKQK-LTILSKSGMKQVASFQCEA----TGELLFELVSHSTS 406 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~-~~~~~~~-~~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~ 406 (867)
++.|.|+.++|||... ....+-||++.-..... ....+.+ ..=+.+|.|+..-.|+-.. ...|.|++..+..
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~- 94 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR- 94 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC-
Confidence 4677789999998542 23367899987432111 1111111 1123467777655555432 2345556665543
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
+.+..+||.+.|++++ ... ..+.|++|...
T Consensus 95 ----~~~~~~iG~~~~~~~~-~~~----~~~~w~~l~~~ 124 (136)
T cd08404 95 ----VTKNEVIGRLVLGPKA-SGS----GGHHWKEVCNP 124 (136)
T ss_pred ----CCCCccEEEEEECCcC-CCc----hHHHHHHHHhC
Confidence 4567899999999877 211 25777776544
No 98
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=80.61 E-value=9.3 Score=36.67 Aligned_cols=91 Identities=21% Similarity=0.199 Sum_probs=58.0
Q ss_pred EEEEeeeccCCCcc-ccCCCceEEEEeccCCCcc-cccccceee---eecccceeeEEEEeee------cceEEEEEEee
Q 002906 335 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIF-FNAKQKLTI---LSKSGMKQVASFQCEA------TGELLFELVSH 403 (867)
Q Consensus 335 v~~~iv~~~n~p~~-~k~~~~~fvr~~~~q~d~~-~~~~~~~~~---~s~~~~k~~~~~qCE~------t~~l~lel~~~ 403 (867)
+.|.|++++|||.. .....+-||++.....+.+ -..+.+..+ +.++-|+..-.|.... ...|.|+|.-+
T Consensus 18 L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~ 97 (133)
T cd04009 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDY 97 (133)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEec
Confidence 56667899999864 2234688999885433221 011122222 2456777666676643 23677777766
Q ss_pred CCCcccccCCccccceeeeecccccCC
Q 002906 404 STSKIPMTGASKTMGTASLSLQNFISP 430 (867)
Q Consensus 404 ~~~~~~~~k~sk~~g~~s~~~~dll~~ 430 (867)
.. +++...||.++|++++|+..
T Consensus 98 d~-----~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 98 DL-----LGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CC-----CCCCcEeEEEEEeHHHCCcc
Confidence 53 45678999999999999854
No 99
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=80.50 E-value=17 Score=36.88 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=61.8
Q ss_pred EEeeeccC--CCccc-cCCCceEEEEeccCC-Ccccccc-cceeeeecccceeeEEEEee----------ecceEEEEEE
Q 002906 337 VEIVAVKN--LPEDH-KDKGDLFVFFSKSQP-DIFFNAK-QKLTILSKSGMKQVASFQCE----------ATGELLFELV 401 (867)
Q Consensus 337 ~~iv~~~n--~p~~~-k~~~~~fvr~~~~q~-d~~~~~~-~~~~~~s~~~~k~~~~~qCE----------~t~~l~lel~ 401 (867)
|-|+.++| +|+.- ....+-||.|.-.-| +..-+.+ ..+.-+.+|-|+....|.=. +...|.||+.
T Consensus 6 l~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~ 85 (155)
T cd08690 6 LTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVY 85 (155)
T ss_pred EEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEE
Confidence 44556666 66653 234689999874222 2221111 11222345666654444322 1346999998
Q ss_pred eeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccC
Q 002906 402 SHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 445 (867)
Q Consensus 402 ~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~ 445 (867)
.+.. . +|+.++||++.|.+++|.... .++.|++|...
T Consensus 86 d~~~-f---~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~~ 122 (155)
T cd08690 86 HKGG-F---LRSDKLLGTAQVKLEPLETKC---EIHESVDLMDG 122 (155)
T ss_pred eCCC-c---ccCCCeeEEEEEEcccccccC---cceEEEEhhhC
Confidence 8763 1 478999999999999997653 35569999754
No 100
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=78.25 E-value=15 Score=36.44 Aligned_cols=101 Identities=17% Similarity=0.296 Sum_probs=61.4
Q ss_pred EEEEeeeccCCCccc---cCCCceEEEEeccCCCcccccccceee---eecccceeeEEEEeee----cceEEEEEEeeC
Q 002906 335 VFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCEA----TGELLFELVSHS 404 (867)
Q Consensus 335 v~~~iv~~~n~p~~~---k~~~~~fvr~~~~q~d~~~~~~~~~~~---~s~~~~k~~~~~qCE~----t~~l~lel~~~~ 404 (867)
+-|.|+.++||+... ..+.+-||.++-+.-+..+ .+++..+ +.+|-|+..-.|.=.. ...|.|+|..+.
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~-~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKL-KKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCccc-ceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 445578899997653 1236899998843222221 1222222 3457777655554322 456888888886
Q ss_pred CCcccccCCccccceeeee----------cccccCCCCcceEeEEEee
Q 002906 405 TSKIPMTGASKTMGTASLS----------LQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 405 ~~~~~~~k~sk~~g~~s~~----------~~dll~~~~~Ls~e~w~~l 442 (867)
. +.+...||.++|. |+|+++. |.-.+++|=.|
T Consensus 96 ~-----~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~-p~~~va~WH~L 137 (138)
T cd08407 96 S-----PGQSLPLGRCSLGLHTSGTERQHWEEMLDN-PRRQIAMWHQL 137 (138)
T ss_pred C-----CcCcceeceEEecCcCCCcHHHHHHHHHhC-CCCchhEEEEC
Confidence 4 5678899999998 5556554 35556666443
No 101
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=74.64 E-value=13 Score=34.84 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=56.2
Q ss_pred EEEEeeeccCCCcccc-----CCCceEEEEeccCCCcccccccceeeeecccceeeEEEE-eeec--ceEEEEEEeeCCC
Q 002906 335 VFVEIVAVKNLPEDHK-----DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQ-CEAT--GELLFELVSHSTS 406 (867)
Q Consensus 335 v~~~iv~~~n~p~~~k-----~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~q-CE~t--~~l~lel~~~~~~ 406 (867)
++|.|++++|||.... ...+=||.+.-.+ ..++ ++-+.-+.+|-|++...|. ++.. ..|.|+|+.+..
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~k-T~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~- 78 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFR-TSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK- 78 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEe-eeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-
Confidence 5677899999986421 1246688887321 1111 1222223467777666665 3333 357788877753
Q ss_pred cccccCCccccceeeeecccccCCC
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPI 431 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~ 431 (867)
+.+...||.++|++++|+...
T Consensus 79 ----~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 ----FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ----CCCCcceEEEEEEHHHHHhhC
Confidence 456789999999999999753
No 102
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=71.32 E-value=26 Score=33.31 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=57.2
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccccccceeeeecccceeeEEEEee-e-cceEEEEEEeeCCCccccc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~-t~~l~lel~~~~~~~~~~~ 411 (867)
+.|.|++++||+... ....+-||+++-.... ...-+..+.=+.+|-|++...|.+. + ...|.|++.-+.. +
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-----~ 75 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-INDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-----L 75 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCee-ccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-----C
Confidence 345678999998542 2346789988853221 1101111222356778877788776 3 4678888887753 3
Q ss_pred CCccccceeeeecccccC
Q 002906 412 GASKTMGTASLSLQNFIS 429 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~ 429 (867)
.+...||.+.|++.+...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 466899999999988764
No 103
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=70.61 E-value=20 Score=49.28 Aligned_cols=111 Identities=16% Similarity=0.256 Sum_probs=76.1
Q ss_pred EEEEEeeeccCCCcc-ccCCCceEEEEe-ccCCCcccccccceeeeecccceeeEEEEee-e-cce-EEEEEEeeCCCcc
Q 002906 334 EVFVEIVAVKNLPED-HKDKGDLFVFFS-KSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGE-LLFELVSHSTSKI 408 (867)
Q Consensus 334 ev~~~iv~~~n~p~~-~k~~~~~fvr~~-~~q~d~~~~~~~~~~~~s~~~~k~~~~~qCE-~-t~~-l~lel~~~~~~~~ 408 (867)
-+.|-+++.+|++.. +. .+=||+++ ..|+-+ -++.+.=+.+|-|++.-+|-.+ | .+. +.||+..+.
T Consensus 1981 ~L~V~V~~a~nl~~~~~~--sdPyv~l~~g~~~~~---kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d---- 2051 (2102)
T PLN03200 1981 SLTVTIKRGNNLKQSMGN--TNAFCKLTLGNGPPR---QTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN---- 2051 (2102)
T ss_pred ceEEEEeeccccccccCC--CCCeEEEEECCCCcc---cccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC----
Confidence 345667888999833 33 67899888 334322 1233444567899988888888 3 444 999999987
Q ss_pred cccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCC-CCCeeEEE
Q 002906 409 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVS-SKPISLRI 458 (867)
Q Consensus 409 ~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~-~~p~~lrv 458 (867)
+|++. .+|.++|+++++.... ....||+|.+++...+ +..+++.+
T Consensus 2052 -~f~kd-~~G~~~i~l~~vv~~~---~~~~~~~L~~~~~k~G~~~~~~~e~ 2097 (2102)
T PLN03200 2052 -TFGKS-SLGKVTIQIDRVVMEG---TYSGEYSLNPESNKDGSSRTLEIEF 2097 (2102)
T ss_pred -ccCCC-CCceEEEEHHHHhcCc---eeeeeeecCcccccCCCcceEEEEE
Confidence 36455 7999999999999654 7889999997543333 35555543
No 104
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.67 E-value=7.9 Score=40.62 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=55.5
Q ss_pred eeEE-ecCCCCCcceeec--CCcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce--------eEEEe
Q 002906 560 WSLK-KKSSKEGHLFELL--GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA--------IALLD 625 (867)
Q Consensus 560 ~~i~-~k~s~dg~l~El~--~~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea--------~aLld 625 (867)
+..+ .-..+||.+|+++ -++|+.|--|.++. +... +.+.=.||.= .++++|+-+||+. .|+|-
T Consensus 91 l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqg-l~gMCvGEkR--kl~IPp~LgYG~~G~~~~IP~~A~Li 167 (188)
T KOG0549|consen 91 LHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQG-LLGMCVGEKR--KLIIPPHLGYGERGAPPKIPGDAVLI 167 (188)
T ss_pred EEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHH-hhhhCcccce--EEecCccccCccCCCCCCCCCCeeEE
Confidence 4445 4467799999999 57899999999988 7776 7777788876 9999999999998 45555
Q ss_pred ccCccEEEc
Q 002906 626 LKSGVIKVK 634 (867)
Q Consensus 626 L~ke~FeVd 634 (867)
.+-+.+++.
T Consensus 168 FdiELv~i~ 176 (188)
T KOG0549|consen 168 FDIELVKIE 176 (188)
T ss_pred EEEEEEEee
Confidence 555555553
No 105
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.67 E-value=3.8 Score=43.49 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=44.3
Q ss_pred CCCCcceeec--CCcceEEecCcccc-ccccccccccccCcceeeeeeCCCCccccee
Q 002906 567 SKEGHLFELL--GNRMINLFPGRKLD-YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI 621 (867)
Q Consensus 567 s~dg~l~El~--~~~Pl~fi~Gr~~~-fE~k~~~~~~~ge~FVT~V~~spe~pYGea~ 621 (867)
-.+|.+|+++ .++|+.|--|.-+. +-.. +..+..|... .+.++|+.+||++-
T Consensus 130 l~~G~vFDsS~~rg~p~~f~l~~vI~Gw~eg-l~~M~vG~k~--~l~IP~~laYG~~g 184 (205)
T COG0545 130 LIDGTVFDSSYDRGQPAEFPLGGVIPGWDEG-LQGMKVGGKR--KLTIPPELAYGERG 184 (205)
T ss_pred cCCCCccccccccCCCceeecCCeeehHHHH-HhhCCCCceE--EEEeCchhccCcCC
Confidence 4489999999 69999999993333 7777 8899999999 99999999999993
No 106
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=69.24 E-value=3.3 Score=43.69 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=43.2
Q ss_pred CCCcceeec--CCcceEEecCcccc-ccccccccccccCcceeeeeeCCCCcccce
Q 002906 568 KEGHLFELL--GNRMINLFPGRKLD-YEHKHCQKQRSEEDFVTAIEFSPADPYGKA 620 (867)
Q Consensus 568 ~dg~l~El~--~~~Pl~fi~Gr~~~-fE~k~~~~~~~ge~FVT~V~~spe~pYGea 620 (867)
.||.+|+.+ .+.|+.|..|.-.. |+.. +..+..|+.+ .|.++|+.+||++
T Consensus 132 ~dG~vfdss~~~g~P~~f~l~~vipG~~ea-L~~M~~G~k~--~~~IP~~lAYG~~ 184 (206)
T PRK11570 132 IDGTVFDSSVARGEPAEFPVNGVIPGWIEA-LTLMPVGSKW--ELTIPHELAYGER 184 (206)
T ss_pred CCCCEEEeccCCCCCeEEEeechhhHHHHH-HcCCCCCCEE--EEEECHHHcCCCC
Confidence 378899988 57899999874333 9988 9999999999 9999999999997
No 107
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=66.11 E-value=72 Score=29.87 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=62.4
Q ss_pred eeeccCCCcc-ccCCCceEEEEeccCCC--c--ccccccceeeeecccceeeEEEEe--eecceEEEEEEeeCCCccccc
Q 002906 339 IVAVKNLPED-HKDKGDLFVFFSKSQPD--I--FFNAKQKLTILSKSGMKQVASFQC--EATGELLFELVSHSTSKIPMT 411 (867)
Q Consensus 339 iv~~~n~p~~-~k~~~~~fvr~~~~q~d--~--~~~~~~~~~~~s~~~~k~~~~~qC--E~t~~l~lel~~~~~~~~~~~ 411 (867)
.+..++|+.. .....+-||++.-.... . ...-+..+.=+.+|-|...-.|.- +....|.||+..+...- -.+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~-~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS-KDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc-CCC
Confidence 4567788743 22235679988855432 1 111112222235677775555532 24567999998886420 003
Q ss_pred CCccccceeeeecccccCCCCcceEeEEEeeccCC
Q 002906 412 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 446 (867)
Q Consensus 412 k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~ 446 (867)
.+..+||.+.++.++|+... ....|++|++..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~~~~ 116 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP---GQKLTLPLKGGK 116 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC---CcEEEEEccCCC
Confidence 46678999999999999653 455688886653
No 108
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=63.05 E-value=47 Score=32.46 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=62.3
Q ss_pred EEEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceee---eecccceeeEEEEee----ecceEEEEEEeeCCC
Q 002906 334 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI---LSKSGMKQVASFQCE----ATGELLFELVSHSTS 406 (867)
Q Consensus 334 ev~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~---~s~~~~k~~~~~qCE----~t~~l~lel~~~~~~ 406 (867)
++.|-|+.++||+.... .+=||.+.-+..++.- +.+..+ +.+|-|...-.|.=. +.+.|.|.|+-+-.
T Consensus 15 ~L~V~vikA~~L~~~g~--sDPYVKv~L~~~~k~~--k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr- 89 (118)
T cd08677 15 ELHVNILEAENISVDAG--CECYISGCVSVSEGQK--EAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR- 89 (118)
T ss_pred EEEEEEEEecCCCCCCC--CCeEEEEEEcCCcCcc--EEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC-
Confidence 35566789999994433 6889988854434421 223333 345677755555322 45678888886653
Q ss_pred cccccCCccccceeeeecccccCCCCcceEeEEEee
Q 002906 407 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 442 (867)
Q Consensus 407 ~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l 442 (867)
+.+..+||.+.++++++-- ....|.|-+|
T Consensus 90 ----fs~~d~IG~v~l~l~~~~~---~~~~~~W~~~ 118 (118)
T cd08677 90 ----FSRHSTLGELRLKLADVSM---MLGAAQWVDL 118 (118)
T ss_pred ----CCCCceEEEEEEccccccC---CccccchhcC
Confidence 5678899999999998632 2356677664
No 109
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=58.09 E-value=73 Score=30.78 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=48.3
Q ss_pred EEEEeeeccCCCccc-cCCCceEEEEeccCCCcccc-cccce-eeeecccceeeEEEEeee----cceEEEEEEeeCCCc
Q 002906 335 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFN-AKQKL-TILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 407 (867)
Q Consensus 335 v~~~iv~~~n~p~~~-k~~~~~fvr~~~~q~d~~~~-~~~~~-~~~s~~~~k~~~~~qCE~----t~~l~lel~~~~~~~ 407 (867)
+.|.|+.++||+... ....+-||.++-....+.+. .+.++ .=+.+|-|+..-.|.-.. ..-|.|+|..+..
T Consensus 16 L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~-- 93 (135)
T cd08410 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV-- 93 (135)
T ss_pred EEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC--
Confidence 566779999998542 23467888877422111111 11111 112467777666666432 2247777776643
Q ss_pred ccccCCccccceeeeec
Q 002906 408 IPMTGASKTMGTASLSL 424 (867)
Q Consensus 408 ~~~~k~sk~~g~~s~~~ 424 (867)
.++..+||.+.|.-
T Consensus 94 ---~~~~~~iG~~~l~~ 107 (135)
T cd08410 94 ---KSSNDFIGRIVIGQ 107 (135)
T ss_pred ---CCCCcEEEEEEEcC
Confidence 45778888887653
No 110
>PLN02352 phospholipase D epsilon
Probab=56.40 E-value=28 Score=43.53 Aligned_cols=87 Identities=14% Similarity=0.308 Sum_probs=68.3
Q ss_pred ecccceeeEEEEee-ec-ceEEEEEEeeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCee
Q 002906 378 SKSGMKQVASFQCE-AT-GELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPIS 455 (867)
Q Consensus 378 s~~~~k~~~~~qCE-~t-~~l~lel~~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~ 455 (867)
.++.|.+.-+++|- +. ..++|.|-- .+.+||.+.|+-++|+.-. . .+++||+|...++..- ++..
T Consensus 56 ~~p~w~e~f~i~~ah~~~~~~~f~vk~----------~~~~ig~~~~p~~~~~~g~-~-~~~~~~~~~~~~~~p~-~~~~ 122 (758)
T PLN02352 56 YDRVWNQTFQILCAHPLDSTITITLKT----------KCSILGRFHIQAHQIVTEA-S-FINGFFPLIMENGKPN-PELK 122 (758)
T ss_pred CCCccccceeEEeeeecCCcEEEEEec----------CCeEEEEEEEEHHHhhCCC-c-ccceEEEcccCCCCCC-CCCE
Confidence 47788989999998 45 678888865 3678999999999999753 2 2999999977765443 3479
Q ss_pred EEEEEeecCCCCCceEEEeecc
Q 002906 456 LRIAVSFTIPTLAPHLLRMVRS 477 (867)
Q Consensus 456 lrv~~S~TpPv~ApylL~~v~~ 477 (867)
|||.+-++|=.+-|+--+-|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~~ 144 (758)
T PLN02352 123 LRFMLWFRPAELEPTWCKILEN 144 (758)
T ss_pred EEEEEEEEEhhhCcchhhcccC
Confidence 9999999999998876666533
No 111
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=49.25 E-value=85 Score=31.37 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=51.0
Q ss_pred ccccCCceEEEEEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeee----ecccceeeEEEEeee---cce
Q 002906 324 IINIPDLKIVEVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTIL----SKSGMKQVASFQCEA---TGE 395 (867)
Q Consensus 324 ~~~l~~r~vvev~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~----s~~~~k~~~~~qCE~---t~~ 395 (867)
|...+.|. -|.|+..+|||.... ...+-||.+.-..-++-+ .+.+..+- ..+.|+..-.|.-.+ .-.
T Consensus 9 Y~p~~~rL----tV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~-~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~ 83 (135)
T cd08692 9 FQAVNSRI----QLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLL-YKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQ 83 (135)
T ss_pred ecCcCCeE----EEEEEEccCCCcccCCCCCCcEEEEEEEECCCcc-eeecCccEECCCCCceecceEEEeCCchhheeE
Confidence 34444553 445678899986422 123468888744333322 12222222 134566555555542 235
Q ss_pred EEEEEEeeCCCcccccCCccccceeeeeccc
Q 002906 396 LLFELVSHSTSKIPMTGASKTMGTASLSLQN 426 (867)
Q Consensus 396 l~lel~~~~~~~~~~~k~sk~~g~~s~~~~d 426 (867)
|++++.-+.. .++...||.++|..+.
T Consensus 84 l~v~v~d~~~-----~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 84 FLIKLYSRSS-----VRRKHFLGQVWISSDS 109 (135)
T ss_pred EEEEEEeCCC-----CcCCceEEEEEECCcc
Confidence 6666654432 4677889999988765
No 112
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=47.87 E-value=2.6e+02 Score=26.82 Aligned_cols=119 Identities=19% Similarity=0.294 Sum_probs=62.8
Q ss_pred EEEEEEeeeccCCCccccCCCceEEEEeccCCCcccccccceeeee-cccceeeEEEEee----e------cceEEEEEE
Q 002906 333 VEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILS-KSGMKQVASFQCE----A------TGELLFELV 401 (867)
Q Consensus 333 vev~~~iv~~~n~p~~~k~~~~~fvr~~~~q~d~~~~~~~~~~~~s-~~~~k~~~~~qCE----~------t~~l~lel~ 401 (867)
.++.|.|..+.++|. ....+||+.+.-+.-.--....+..+.. .-.|.+.-.+.|- . .+.+.|.|.
T Consensus 7 f~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 7 FQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 578888999999988 2367998886221110000111111111 1123333333332 1 235666666
Q ss_pred eeCCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeecC
Q 002906 402 SHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 464 (867)
Q Consensus 402 ~~~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~Tp 464 (867)
...++- ++ +.+|+++|.+.++.+.. .=....-+.|... ....-.|+|.+++.+
T Consensus 84 ~~~~~~----~k-~~lG~~~inLaey~~~~-~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 84 EVDGSG----KK-KVLGKVSINLAEYANED-EEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EecCCC----cc-ceEEEEEEEHHHhhCcC-CCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 664211 22 79999999999999863 2233444555444 122345666665544
No 113
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=43.25 E-value=22 Score=39.20 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=41.7
Q ss_pred CCCcceeec--CCcceEEecCcccc-ccccccccccccCcceeeeeeCCCCcccce
Q 002906 568 KEGHLFELL--GNRMINLFPGRKLD-YEHKHCQKQRSEEDFVTAIEFSPADPYGKA 620 (867)
Q Consensus 568 ~dg~l~El~--~~~Pl~fi~Gr~~~-fE~k~~~~~~~ge~FVT~V~~spe~pYGea 620 (867)
.||.+|+.+ .+.|+.|..+.-.. |++. +..+..|+.+ .|.++|+.+||+.
T Consensus 176 ~dG~vfdss~~~g~p~~f~l~~vipG~~Ea-L~~Mk~Gek~--~l~IP~~laYG~~ 228 (269)
T PRK10902 176 IDGKEFDNSYTRGEPLSFRLDGVIPGWTEG-LKNIKKGGKI--KLVIPPELAYGKA 228 (269)
T ss_pred CCCCEeeccccCCCceEEecCCcchHHHHH-HhcCCCCcEE--EEEECchhhCCCC
Confidence 478888887 47899988874222 8888 9999999998 9999999999987
No 114
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=34.51 E-value=72 Score=39.68 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=71.4
Q ss_pred EEEEEEeeeccCCCcccc-CCCceEEEEeccCCCcccccccceeeeecccceeeE-----EEEee-e-c-ceEEEEEEee
Q 002906 333 VEVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVA-----SFQCE-A-T-GELLFELVSH 403 (867)
Q Consensus 333 vev~~~iv~~~n~p~~~k-~~~~~fvr~~~~q~d~~~~~~~~~~~~s~~~~k~~~-----~~qCE-~-t-~~l~lel~~~ 403 (867)
-.+++-|+..||||+..- .+.+.|-... .+.+..+-+.+-||-+. -|||| | | .-|-|=|.-.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~---------lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~ 75 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVN---------LDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDR 75 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEe---------ecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEecc
Confidence 357888999999997622 2344554333 22222233344444343 45666 3 3 5666655543
Q ss_pred CCCcccccCCccccceeeeecccccCCCCcceEeEEEeeccCCCCCCCCCeeEEEEEeecCCCCC
Q 002906 404 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLA 468 (867)
Q Consensus 404 ~~~~~~~~k~sk~~g~~s~~~~dll~~~~~Ls~e~w~~l~~~~~~~~~~p~~lrv~~S~TpPv~A 468 (867)
- ++.-++||++.|+=.||..- + -.+.||.|.|-+...-.+- -+++.+-+|+=.|+
T Consensus 76 d------~~~D~~IGKvai~re~l~~~-~--~~d~W~~L~~VD~dsEVQG-~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 76 D------LKRDDIIGKVAIKREDLHMY-P--GKDTWFSLQPVDPDSEVQG-KVHLELALTEAIQS 130 (800)
T ss_pred c------cccccccceeeeeHHHHhhC-C--CCccceeccccCCChhhce-eEEEEEEeccccCC
Confidence 3 68899999999999999965 3 7899999988765443221 23444445555543
No 115
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.66 E-value=35 Score=37.00 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=42.0
Q ss_pred CCcceeec-CCcceE-EecCcccc---ccccccccccccCcceeeeeeCCCCcccce
Q 002906 569 EGHLFELL-GNRMIN-LFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA 620 (867)
Q Consensus 569 dg~l~El~-~~~Pl~-fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea 620 (867)
.|.+|+.+ .++|.. |-.|.+-. ++.- +.+++.|..= .|.++|+.+||+.
T Consensus 152 ~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~g-v~GMkvGGkR--rviIPp~lgYg~~ 205 (226)
T KOG0552|consen 152 NGKVFDSNFGGKPFKLFRLGSGEVIKGWDVG-VEGMKVGGKR--RVIIPPELGYGKK 205 (226)
T ss_pred CCeEeecccCCCCccccccCCCCCCchHHHh-hhhhccCCee--EEEeCcccccccc
Confidence 67788988 889988 77787776 7777 8899998876 9999999999998
No 116
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=30.46 E-value=1.9e+02 Score=37.48 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=8.2
Q ss_pred ccCCCCCCCCCeeEEEEE
Q 002906 443 VPRSGNVSSKPISLRIAV 460 (867)
Q Consensus 443 ~~~~~~~~~~p~~lrv~~ 460 (867)
++-.......|+..|+..
T Consensus 843 t~lg~~la~l~iep~~~k 860 (1282)
T KOG0921|consen 843 TPLGRMLARLPIEPRIGK 860 (1282)
T ss_pred cchhhhhhhccCcccccc
Confidence 333444445555555443
No 117
>PF11252 DUF3051: Protein of unknown function (DUF3051); InterPro: IPR021411 This entry is represented by Sugarcane yellow leaf virus (SCYLV), Orf0; it is a family of uncharacterised viral proteins.
Probab=29.57 E-value=1.2e+02 Score=30.81 Aligned_cols=86 Identities=24% Similarity=0.371 Sum_probs=56.6
Q ss_pred hhhhHHHHHHhhhhHHHHhccccCCcHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhcccChhhHHHHH
Q 002906 165 TKYDLVSAVKRQSPFFYQVSRSHFNNDVFLEEAVARYKGFLHLIKKNRERSIKRFCVPTYDIDLIWHTHQLHPDSYCKDM 244 (867)
Q Consensus 165 is~DLVaAV~RQ~sF~~qv~sP~~~d~~fL~rAi~RYkrFL~Lik~~p~~~~~~~LVPTlDIDLVWHTHQL~P~~Y~~Dc 244 (867)
.+.|++..|.|-...+++=-.|.- ..|---..+-+||..-+-..| .+-|.-.+-|..|.|--
T Consensus 78 ~g~difqdvarlq~~lergyd~fr---svlgv~l~e~erfv~rileqp------~~~p~q~~rlcfhyh~~--------- 139 (189)
T PF11252_consen 78 VGMDIFQDVARLQNILERGYDPFR---SVLGVHLREHERFVSRILEQP------PMDPCQTVRLCFHYHNT--------- 139 (189)
T ss_pred hchHHHHHHHHHHHHHHhcchhHH---HHHHHHHHHHHHHHHHHhcCC------CCChhHHHHHHHHhccc---------
Confidence 356888889888777764222221 234455566677877555444 46788889999999865
Q ss_pred HhHhCccccCCCcccccccccchhhHHHHHHHHHHHHhCCCCC
Q 002906 245 SKTLGKVLEHDDMDQDRTKGKKLDTGFSGTTKQWEETFGSRYP 287 (867)
Q Consensus 245 ~~i~Gr~IdHdD~i~~r~eg~kL~~af~~T~~Lwe~~FGepY~ 287 (867)
++|||..++ ++.+|.. ..||.||-
T Consensus 140 -------ldhdd~ds~------~et~~~n------~~~g~p~i 163 (189)
T PF11252_consen 140 -------LDHDDSDSD------METDFHN------RSFGRPYI 163 (189)
T ss_pred -------cccCCcccc------chhcccc------hhcCCchh
Confidence 899987542 3333332 57899985
No 118
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=28.22 E-value=46 Score=33.51 Aligned_cols=43 Identities=40% Similarity=1.008 Sum_probs=0.0
Q ss_pred CCCCCC-CccccCCCCCCC-----C---CCCCCCCc-cccCCCCCCCCCCCCC
Q 002906 719 CGGGRV-ASVKSSGCGGCG-----G---GGGGCGNM-VNGGGCGGCGGGCGGG 761 (867)
Q Consensus 719 c~~~c~-~~~~~g~cgg~~-----~---c~~gcg~~-~~~~~c~~~~~~~~~g 761 (867)
|..-|. -.....+||.|| | |+|-|=++ .....||.|+.-|..|
T Consensus 73 C~~~Cvdv~~d~~nCG~Cg~~C~~g~~cC~G~Cvd~~~d~~~CG~Cg~~C~~G 125 (136)
T PF04885_consen 73 CNNKCVDVSSDRNNCGACGNKCPYGQTCCGGQCVDLNSDPRHCGACGNKCPPG 125 (136)
T ss_pred cCCcCCccCCCccccHhhcCCCCCCceecCCEeECCCCCccccCCCCCcCCCc
No 119
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.64 E-value=1.9e+02 Score=33.86 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=51.7
Q ss_pred ecCCCCCcceeec-CCcceEEecCcccc---ccccccccccccCcceeeeeeCCCCcccce------eEEEeccCccEEE
Q 002906 564 KKSSKEGHLFELL-GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKA------IALLDLKSGVIKV 633 (867)
Q Consensus 564 ~k~s~dg~l~El~-~~~Pl~fi~Gr~~~---fE~k~~~~~~~ge~FVT~V~~spe~pYGea------~aLldL~ke~FeV 633 (867)
..=++||.++-+- .+.-|-++.=..|+ |-++ ....|||.++|+|+..|.-- .+|+.|+-+.-..
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~ 360 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQ 360 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh------hheeeeeeEEEcCCcCcccccccCCceeEEEEeeccccc
Confidence 3446788877766 55566666656665 2222 22349999999999887655 6777666633221
Q ss_pred ---cC-eehhhHHHHHHHHHHHhhh
Q 002906 634 ---KE-EWFLLLGIISAFILSDALK 654 (867)
Q Consensus 634 ---de-~~~~lp~ii~~~~~~~~~~ 654 (867)
.. .|-++.++++-|+++-|+.
T Consensus 361 ~~~~~~~~~~~~~~~lL~~l~~I~~ 385 (398)
T KOG0771|consen 361 LHRLPKRRKIPAWLALLFVLSYIIA 385 (398)
T ss_pred ccccccchhhhHHHHHHHHHHHHHH
Confidence 22 3445556666666665543
No 120
>PF08050 Tet_res_leader: Tetracycline resistance leader peptide; InterPro: IPR012618 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(L) efflux proteins. Tet(L) is a transmembrane protein that can function as a metal-tetracycline/H+ antiporter. Its sequence is preceded by a leader region region that contains a 20-amino-acid open reading frame and an appropriately spaced ribosome binding site []. Expression of the gene is induced by addition of tetracycline, which is thought to act by binding to ribosomes that translate the tet(L) leader peptide coding sequence. The presence of three inverted repeats, which can form two different conformations of mRNA, suggests that the tetracycline resistance (TcR) region is regulated by a translational attenuation mechanism. A Rho-independent transcriptional terminator structure is present immediately after the translational stop codon of the Tet protein [].; GO: 0046677 response to antibiotic
Probab=25.50 E-value=32 Score=23.99 Aligned_cols=16 Identities=56% Similarity=0.495 Sum_probs=14.1
Q ss_pred ccccccccccceeecc
Q 002906 847 NACNEEQSKETSVSMN 862 (867)
Q Consensus 847 ~~~~~~~~~~~~~~~~ 862 (867)
|.||.-|-||.||||.
T Consensus 4 ~k~Nrvqlk~~svsm~ 19 (20)
T PF08050_consen 4 NKMNRVQLKEGSVSMT 19 (20)
T ss_pred cccceEEeeeeEEEee
Confidence 6789999999999984
No 121
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=24.31 E-value=2.7e+02 Score=36.19 Aligned_cols=13 Identities=23% Similarity=0.351 Sum_probs=5.9
Q ss_pred ccCcchhHHHhhh
Q 002906 81 VVPLDCEWIWHCH 93 (867)
Q Consensus 81 vPPLDV~~VWH~H 93 (867)
-||+---.-||+.
T Consensus 324 apP~anwn~w~A~ 336 (1282)
T KOG0921|consen 324 APPLQNWNPWRAS 336 (1282)
T ss_pred CCccccccccccc
Confidence 3444444445443
No 122
>PF12785 VESA1_N: Variant erythrocyte surface antigen-1; InterPro: IPR024751 This entry represents variant erythrocyte surface antigen 1, versions a and b, of Babesia. Babesia bovis is a tick-borne, intra-erythrocytic, protozoal parasite of cattle that shares many lifestyle parallels with the most virulent of the human malarial parasites, Plasmodium falciparum. Babesia uses antigenic variation to establish consistent infections of long duration. The two variants of VESA1, a and b, are expressed from different but closely related genes, and variation is achieved through the involvement of a segmental gene conversion mechanism and low-frequency epigenetic in situ switching of transcriptional activity from the VESA1 gene-pair to a possible other gene pair [].
Probab=24.30 E-value=3.2e+02 Score=32.63 Aligned_cols=99 Identities=33% Similarity=0.805 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCccccCCCC--C-------CCCCCCC-----------------CCCCCCCCCCCcccccc-CCCCC
Q 002906 730 SGCGGCGGGGGGCGNMVNGGGCG--G-------CGGGCGG-----------------GCGGGCGGGCAALVKSS-GCGGG 782 (867)
Q Consensus 730 g~cgg~~~c~~gcg~~~~~~~c~--~-------~~~~~~~-----------------gc~~~~~~~~~~~~~~~-~~~~~ 782 (867)
++++.|.+-++.-...-+.++|. - |.. ||+ ||-- |.+.-.+. .|.
T Consensus 81 ~~~~~c~~~~~~~~~hg~~~~c~yl~dv~~~~~c~~-c~Cmkw~v~~~~~~g~hLGrgCtr-----C~~s~~~~~~C~-- 152 (462)
T PF12785_consen 81 GGNGKCKGGGGNGNPHGGKGSCKYLKDVKPNNPCDT-CGCMKWDVPDPDNEGHHLGRGCTR-----CSDSGGSDDCCC-- 152 (462)
T ss_pred CCCCCCCCCCCCCCCCCCCCccchhhhcCCCCCCCC-CcceEeccCCCCCCccccccCCcc-----cccCCCCCCCCc--
Q ss_pred CCCCCCCCCCCCCCCCCcccccCC--CCCCCCCCCCCcccccCCCCCCCCCCCcccccccccccccccc
Q 002906 783 ECGGGCGSGGCGAGCGNMVKTGGC--GSGGCGAGCGNTVKTGGCGGCGGGCGGNLVAKSASEYKVGNAC 849 (867)
Q Consensus 783 ~c~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (867)
|++|-++ |.+| +...| .+..|.--|. ++|+.|-.-|-=...+.........+.|
T Consensus 153 -C~~ggg~--csgG-----kkCkCa~aGkcckCCc~-----~~~~~C~~~c~C~~~~~~~~~~~~~~kc 208 (462)
T PF12785_consen 153 -CSTGGGG--CSGG-----KKCKCAGAGKCCKCCCK-----GGCGKCKDCCSCGTEDSNCGGSEAYKKC 208 (462)
T ss_pred -cCCCCCC--ccCC-----ccccCCCCCcccCCcCC-----CCCCCcccccccccccccccccccCCce
No 123
>PF01439 Metallothio_2: Metallothionein; InterPro: IPR000347 Members of this family are metallothioneins. These proteins are cysteine rich proteins that bind to heavy metals. Members of this family appear to be closest to Class II metallothioneins.; GO: 0046872 metal ion binding
Probab=21.34 E-value=53 Score=30.02 Aligned_cols=6 Identities=67% Similarity=1.968 Sum_probs=2.7
Q ss_pred CCCCCC
Q 002906 784 CGGGCG 789 (867)
Q Consensus 784 c~~~~~ 789 (867)
||.||.
T Consensus 11 CGs~C~ 16 (74)
T PF01439_consen 11 CGSGCK 16 (74)
T ss_pred CCCCCC
Confidence 444444
Done!