BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002909
(867 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/803 (54%), Positives = 580/803 (72%), Gaps = 8/803 (0%)
Query: 7 LKRSDTIADTMPDALRQSRYYMKKCFSRFVAKGKRLMKRHHLMDEVEKSIEDKIERGKVL 66
+ R + + + + L R + SR AKGK +++++ ++ E E E R K+
Sbjct: 8 ITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQT--RKKLE 65
Query: 67 EGLLGYILSSTQEXXXXXXXXXXXXXXXXGSWEYVKVNSEDLTVDGINVLEYLKFKETIF 126
G +L STQE G WEY++VN L V+ + E+L FKE +
Sbjct: 66 GGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELV 125
Query: 127 DQDWAKDEN-ALELDFGAMDFSSPHLTLSSSIGNGVNYVSKFMSTRLSANSEKAKQFLDY 185
D K+ N LELDF + S P TL IGNGV+++++ +S +L + E L +
Sbjct: 126 DG--VKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 186 LLALNHRGEQLMINDTLDTVDKLQAALIAAEVSISDLPKDTPYQEFQQRFKEWGFEKGWG 245
L +H+G+ LM+++ + ++ LQ L AE +++L +T Y+EF+ +F+E G E+GWG
Sbjct: 184 LRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 246 NTAERVRETMRLFSEALQAPDAAKLQVLFSRLPNMFNVVIFSPHGYFGQADVLGLPDTGG 305
+ AERV + +RL + L+APD L+ R+P +FNVVI SPHGYF Q +VLG PDTGG
Sbjct: 244 DNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 306 QVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPIYDTKHSH 365
QVVYILDQVRALE E+L RIKQQGL++KP+IL++TRL+P++ GT C + LE +YD+++
Sbjct: 304 QVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 366 ILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVAS 425
ILR+PF+TE+ I+ +W+SRF+++PYL + +DA ++ + GKPDLIIGNYSDGNLVAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 426 LMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTY 485
L+A KLG+TQ TIAHALEK+KY DSD WK+LD KYHFSCQFTAD+ AMN TDFIITST+
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483
Query: 486 QEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRL 545
QEIAGSK+ GQYESHTAFT+PGL RVV GI+VFDPKFNI +PGAD S+YFPYTE+++RL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 543
Query: 546 TSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNM 605
T FH +IEELLYS +N EH+ L D+KKPI+F+MARLD VKN++GL EWYGKN RLR +
Sbjct: 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLREL 603
Query: 606 VNLVVVAGFFDPSK-SHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCI 664
NLVVV G D K S D EE AE+KKM+ LIE+Y+L GQFRWI++Q DR RNGELYR I
Sbjct: 604 ANLVVVGG--DRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYI 661
Query: 665 ADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESS 724
DTKGAFVQPALYEAFGLTV+EAM CGLPTFAT +GGPAEII+ G SGFHIDP +GD+++
Sbjct: 662 CDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721
Query: 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGSIYGFWRQINKEPKL 784
+ +ADFF KCK D +W+++S G QRI E YTW+IY+ ++L + +YGFW+ ++ +L
Sbjct: 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRL 781
Query: 785 AKQRYIQMFYSLLFRKLASNVPI 807
+RY++MFY+L +R LA VP+
Sbjct: 782 EARRYLEMFYALKYRPLAQAVPL 804
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/803 (53%), Positives = 572/803 (71%), Gaps = 8/803 (0%)
Query: 7 LKRSDTIADTMPDALRQSRYYMKKCFSRFVAKGKRLMKRHHLMDEVEKSIEDKIERGKVL 66
+ R + + + + L R + SR AKGK +++++ ++ E E E R K+
Sbjct: 8 ITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQT--RKKLE 65
Query: 67 EGLLGYILSSTQEXXXXXXXXXXXXXXXXGSWEYVKVNSEDLTVDGINVLEYLKFKETIF 126
G +L STQE G WEY++VN L V+ + E+L FKE +
Sbjct: 66 GGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELV 125
Query: 127 DQDWAKDEN-ALELDFGAMDFSSPHLTLSSSIGNGVNYVSKFMSTRLSANSEKAKQFLDY 185
D K+ N LELDF + S P TL IGNGV+++++ +S +L + E L +
Sbjct: 126 DG--VKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 186 LLALNHRGEQLMINDTLDTVDKLQAALIAAEVSISDLPKDTPYQEFQQRFKEWGFEKGWG 245
L +H+G+ L +++ + ++ LQ L AE +++L +T Y+EF+ +F+E G E+GWG
Sbjct: 184 LRLHSHQGKNLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 246 NTAERVRETMRLFSEALQAPDAAKLQVLFSRLPNMFNVVIFSPHGYFGQADVLGLPDTGG 305
+ AERV + +RL + L+APD L+ R+P +FNVVI SPHGYF Q +VLG PDTGG
Sbjct: 244 DNAERVLDXIRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 306 QVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPIYDTKHSH 365
QVVYILDQVRALE E L RIKQQGL++KP+IL++TRL+P++ GT C + LE +YD+++
Sbjct: 304 QVVYILDQVRALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 366 ILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVAS 425
ILR+PF+TE+ I+ +W+SRF+++PYL + +DA ++ + GKPDLIIGNYSDGNLVAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 426 LMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTY 485
L+A KLG+TQ TIAHALEK+KY DSD WK+LD KYHFSCQFTAD+ A N TDFIITST+
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTF 483
Query: 486 QEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRL 545
QEIAGSK+ GQYESHTAFT+PGL RVV GI+VFDPKFNI +PGAD S+YFPYTE+++RL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKRRL 543
Query: 546 TSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNM 605
T FH +IEELLYS +N EH+ L D+KKPI+F+ ARLD VKN++GL EWYGKN RLR +
Sbjct: 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLREL 603
Query: 606 VNLVVVAGFFDPSK-SHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCI 664
NLVVV G D K S D EE AE KK + LIE+Y+L GQFRWI++Q DR RNGELYR I
Sbjct: 604 ANLVVVGG--DRRKESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRYI 661
Query: 665 ADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESS 724
DTKGAFVQPALYEAFGLTV+EA CGLPTFAT +GGPAEII+ G SGFHIDP +GD+++
Sbjct: 662 CDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721
Query: 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGSIYGFWRQINKEPKL 784
+ +ADFF KCK D +W+++S G QRI E YTW+IY+ ++L + +YGFW+ ++ +L
Sbjct: 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRL 781
Query: 785 AKQRYIQMFYSLLFRKLASNVPI 807
+RY++ FY+L +R LA VP+
Sbjct: 782 EARRYLEXFYALKYRPLAQAVPL 804
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 145/502 (28%), Positives = 238/502 (47%), Gaps = 70/502 (13%)
Query: 282 NVVIFSPHGYFGQADVLGL--PDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVV 339
+V +P G F AD PD GGQ+VY+ +E+ L + + G+ Q+ ++
Sbjct: 9 HVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGV----QVDII 56
Query: 340 TRLIPNSKGTKCSQELEPIYDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDAT 399
TR I + + S E++ +T I+RIPF ++ ++ + +++PYL +
Sbjct: 57 TRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVN--- 108
Query: 400 AKILDLM--EGK-PDLIIGNYSDGNLVASLMASKLGITQATIAHALEKSKYED---SDAK 453
KI++ EGK P ++ +Y DG L L+ + G+ H+L K E + +
Sbjct: 109 -KIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSN 167
Query: 454 WKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVV 513
+KE+D ++ F + A+ + M+ D II ST QE R GQY SH +
Sbjct: 168 FKEMDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHDLYR-------- 212
Query: 514 SGINVFDP-KFNIAAPGADQSVY-FPYTEKQK-RLTSFHPDIEELLYSKEDNSEHIGYLA 570
+NV D KF++ PG + V+ Y +K K ++T + ++ SE +
Sbjct: 213 GAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKY--------LERDLGSERM---- 260
Query: 571 DRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVV-VAGFFDPSKSHDR---EEI 626
+ P I + +RLD KN GL E Y +NK L++ NLV+ + G +P + + R EE
Sbjct: 261 --ELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEK 318
Query: 627 AEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIE 686
+ K+ LI+ +G+ + + G Y +A F + YE FGL +E
Sbjct: 319 EILGKIIELIDNNDCRGKVSMFPLNSQQELAG-CYAYLASKGSVFALTSFYEPFGLAPVE 377
Query: 687 AMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSA 746
AM GLP T GGPAEI+ G G +DP + ++ + + FE +T W+
Sbjct: 378 AMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEET----WSAYQE 433
Query: 747 AGRQRIYECYTWKIYANKVLNM 768
G+QR+ E YTW+ A L +
Sbjct: 434 KGKQRVEERYTWQETARGYLEV 455
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 21/207 (10%)
Query: 570 ADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREE--IA 627
D +KPII ++R D K I + E Y K K V L++V +HD E I
Sbjct: 227 VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVG-----VMAHDDPEGWIY 281
Query: 628 EIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEA 687
K + + E Y ++ I R ++ +D +Q ++ E FGLTV EA
Sbjct: 282 FEKTLRKIGEDYDVKVLTNLIGVHA---REVNAFQRASDV---ILQMSIREGFGLTVTEA 335
Query: 688 MNCGLPTFATNQGGPAEIIIDGVSGFHI-DPNNGDESSNKIADFFEKCKTDAGYWNQMSA 746
M G P GG I+DG +GF + D N E + E K +M A
Sbjct: 336 MWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSK-------EMGA 388
Query: 747 AGRQRIYECYTWKIYANKVLNMGSIYG 773
++R+ + + + + L++ + G
Sbjct: 389 KAKERVRKNFIITKHMERYLDILNSLG 415
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 570 ADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREE--IA 627
D +KPII ++R D K I + E Y K K V L++V +HD E I
Sbjct: 227 VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVG-----VXAHDDPEGWIY 281
Query: 628 EIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEA 687
K + + E Y ++ I R ++ +D +Q ++ E FGLTV EA
Sbjct: 282 FEKTLRKIGEDYDVKVLTNLIGVHA---REVNAFQRASDV---ILQXSIREGFGLTVTEA 335
Query: 688 MNCGLPTFATNQGGPAEIIIDGVSGFHIDPNN 719
G P GG I+DG +GF + N
Sbjct: 336 XWKGKPVIGRAVGGIKFQIVDGETGFLVRDAN 367
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 678 EAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTD 737
E+FGL ++EAM CG+P T GG E+I G +G+ + GD + +AD + D
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEV--GDTTG--VADQAIQLLKD 350
Query: 738 AGYWNQMSAAGRQRIYE 754
M R+ +YE
Sbjct: 351 EELHRNMGERARESVYE 367
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 21/202 (10%)
Query: 570 ADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREE--IA 627
D +KPII ++R D K I + E Y K K V L++V +HD E I
Sbjct: 227 VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVG-----VMAHDDPEGWIY 281
Query: 628 EIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEA 687
K + + E Y ++ I R ++ +D +Q ++ FGLTV EA
Sbjct: 282 FEKTLRKIGEDYDVKVLTNLIGVHA---REVNAFQRASDV---ILQMSIRAGFGLTVTEA 335
Query: 688 MNCGLPTFATNQGGPAEIIIDGVSGFHI-DPNNGDESSNKIADFFEKCKTDAGYWNQMSA 746
M G P GG I+DG +GF + D N E + E K +M A
Sbjct: 336 MWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSK-------EMGA 388
Query: 747 AGRQRIYECYTWKIYANKVLNM 768
++R+ + + + + L++
Sbjct: 389 KAKERVRKNFIITKHMERYLDI 410
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 678 EAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTD 737
E+FGL ++EAM CG+P T GG E+I G +G+ + GD + +AD + D
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEV--GDTTG--VADQAIQLLKD 370
Query: 738 AGYWNQMSAAGRQRIYE 754
M R+ +YE
Sbjct: 371 EELHRNMGERARESVYE 387
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 641 LQGQFRWI-----AAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTF 695
L G R++ A + R+ ++Y C G E+FG+ ++EAM G
Sbjct: 261 LAGHLRFLGQVDDATKASAMRSADVY-CAPHLGG--------ESFGIVLVEAMAAGTAVV 311
Query: 696 ATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYEC 755
A++ ++ DG +G + ++ D + + E + AGY + S +R++
Sbjct: 312 ASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARAS----ERVHR- 366
Query: 756 YTWKIYANKVLNM 768
Y W + + +++ +
Sbjct: 367 YDWSVVSAQIMRV 379
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 38.1 bits (87), Expect = 0.024, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 678 EAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHI--DPNNGDESSNKIADFFEKCK 735
E FGLT IEA G P A N+GG E +I+ +G+ + D N ++ K++ +K K
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAXKKVSKNPDKFK 167
Query: 736 TD 737
D
Sbjct: 168 KD 169
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 657 NGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHI 715
N L I P+ +E GL ++ M G P + GG + +I+G +GFH+
Sbjct: 391 NAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHM 449
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 674 PALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEK 733
P+ E+FGL +EA G P A GG + +G +G +D ++ ++ +A +
Sbjct: 312 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDD 371
Query: 734 CKT 736
+T
Sbjct: 372 DET 374
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 674 PALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEK 733
P+ E+FGL +EA G P A GG + +G +G +D ++ ++ +A +
Sbjct: 332 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDD 391
Query: 734 CKT 736
+T
Sbjct: 392 DET 394
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 671 FVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKI 727
+ PA EA G+ ++EA+ GLP T G A I D G I E N++
Sbjct: 274 LLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEV 330
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 672 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFF 731
+ P+ +E FGL +EAM G A+ GG +II + +G + + E +N I
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 393
Query: 732 EKCKTD 737
E ++D
Sbjct: 394 ELSRSD 399
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 672 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFF 731
+ P+ +E FGL +EAM G A+ GG +II + +G + + E +N I
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 393
Query: 732 EKCKTD 737
E ++D
Sbjct: 394 ELSRSD 399
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 672 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFF 731
+ P+ +E FGL +EAM G A+ GG +II + +G + + E +N I
Sbjct: 336 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 394
Query: 732 EKCKTD 737
E ++D
Sbjct: 395 ELSRSD 400
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 673 QPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKI 727
PA EA G+ ++EA+ GLP T G A I D G I E N++
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEV 330
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 672 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFF 731
+ P+ +E FGL +EAM G A+ GG +II + +G + + E +N I
Sbjct: 120 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 178
Query: 732 EKCKTD 737
E ++D
Sbjct: 179 ELSRSD 184
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 659 ELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPN 718
+++ A T+G + E G+ +EA CG+P A GG E + +G ++ +
Sbjct: 274 DIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGS 329
Query: 719 NGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768
+ D+ S + + + D M AAGR + ++W+I ++ N+
Sbjct: 330 DVDKLSELLIELLD----DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 659 ELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPN 718
+++ A T+G + E G+ +EA CG+P A GG E + +G ++ +
Sbjct: 274 DIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGS 329
Query: 719 NGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768
+ D+ S + + + D M AAGR + ++W+I ++ N+
Sbjct: 330 DVDKLSELLIELLD----DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Shigella Flexineri: New Insights Into Its Catalytic
Mechanism
Length = 354
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 257 LFSEALQAPDAAKLQVLF--SRLPNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQV 314
LFS+ L PDA L + F P SP D L +PD ++ Y+++ V
Sbjct: 74 LFSDILTVPDAMGLGLYFEAGEGPR-----FTSPVTCKADVDKLPIPDPEDELGYVMNAV 128
Query: 315 RALEEELLLRIKQQGLSVKPQIL 337
R + EL + G S P L
Sbjct: 129 RTIRHELKGEVPLIGFSGSPWTL 151
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
Length = 145
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 484 TYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINV-FDPKFNIAAPGADQSVYFPYTEKQ 542
TY E+ GSK G ++ TAF L R IN F P +++ PG+++ + K
Sbjct: 18 TYLELKGSKANEGVPQAMTAFA-EFLNRTGIPINPRFSPGMSMSVPGSEKEFF----AKV 72
Query: 543 KRLTSFHPDIEELLYSKE 560
K L S H + LL K+
Sbjct: 73 KELMSSHQFVVVLLPRKD 90
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 672 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVS-------GFHIDPNN---GD 721
V P+ YE +G T E G+P+ TN G + D + G +I D
Sbjct: 523 VFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPD 582
Query: 722 ESSNKIADFFEKC--KTDAGYWNQMSAAGRQRIYECYTWK 759
ES ++ D+ E+ KT A NQ + +R+ + WK
Sbjct: 583 ESVEQLVDYMEEFVKKTAAQAINQRNRT--ERLSDLLDWK 620
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 484 TYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINV-FDPKFNIAAPGADQSVYFPYTEKQ 542
TY E+ GSK G ++ TAF L R IN F P +++ PG+++ + K
Sbjct: 18 TYLELKGSKANEGVPQAMTAFA-EFLNRTGIPINPRFSPGMSMSVPGSEKEFF----AKV 72
Query: 543 KRLTSFHPDIEELLYSKE 560
K L S H + LL K+
Sbjct: 73 KELMSSHQFVVVLLPRKD 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,466,498
Number of Sequences: 62578
Number of extensions: 1069243
Number of successful extensions: 2542
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2508
Number of HSP's gapped (non-prelim): 34
length of query: 867
length of database: 14,973,337
effective HSP length: 107
effective length of query: 760
effective length of database: 8,277,491
effective search space: 6290893160
effective search space used: 6290893160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)