Query 002909
Match_columns 867
No_of_seqs 534 out of 3604
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 100.0 6E-175 2E-179 1583.2 67.6 804 4-811 5-808 (816)
2 2r60_A Glycosyl transferase, g 100.0 5.1E-45 1.7E-49 423.5 36.6 427 278-769 5-456 (499)
3 3c48_A Predicted glycosyltrans 100.0 7.3E-43 2.5E-47 397.0 37.5 402 279-769 19-422 (438)
4 3fro_A GLGA glycogen synthase; 100.0 9.2E-43 3.1E-47 394.1 36.7 398 280-769 2-427 (439)
5 3vue_A GBSS-I, granule-bound s 100.0 5.7E-42 2E-46 402.7 34.2 325 408-769 152-508 (536)
6 3okp_A GDP-mannose-dependent a 100.0 6.2E-40 2.1E-44 366.0 34.0 365 279-768 3-375 (394)
7 2qzs_A Glycogen synthase; glyc 100.0 6.5E-40 2.2E-44 378.6 32.5 423 281-769 1-473 (485)
8 2jjm_A Glycosyl transferase, g 100.0 3.6E-39 1.2E-43 362.2 36.9 356 301-769 24-382 (394)
9 1rzu_A Glycogen synthase 1; gl 100.0 5.3E-40 1.8E-44 379.4 29.8 428 281-769 1-472 (485)
10 2iw1_A Lipopolysaccharide core 100.0 7.3E-40 2.5E-44 363.3 18.0 365 281-770 1-369 (374)
11 2gek_A Phosphatidylinositol ma 100.0 1.9E-38 6.5E-43 355.8 24.4 360 278-768 18-379 (406)
12 2x6q_A Trehalose-synthase TRET 100.0 2.8E-38 9.4E-43 357.5 25.8 285 408-770 125-412 (416)
13 3oy2_A Glycosyltransferase B73 100.0 1E-36 3.4E-41 344.1 26.5 357 281-769 1-387 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 2.9E-36 9.8E-41 332.0 24.3 310 280-770 3-333 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 2.4E-33 8.2E-38 319.5 12.9 346 278-764 44-402 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.9E-30 6.6E-35 287.4 26.8 338 279-770 5-355 (364)
17 3nb0_A Glycogen [starch] synth 100.0 3.7E-30 1.2E-34 301.1 22.1 334 408-770 180-631 (725)
18 2hy7_A Glucuronosyltransferase 100.0 1.7E-31 5.9E-36 303.3 9.9 242 409-768 124-373 (406)
19 2vsy_A XCC0866; transferase, g 100.0 5E-28 1.7E-32 285.0 26.7 171 564-770 369-557 (568)
20 1uqt_A Alpha, alpha-trehalose- 100.0 3.1E-28 1.1E-32 282.1 22.6 321 398-768 113-450 (482)
21 3beo_A UDP-N-acetylglucosamine 100.0 1.7E-28 5.9E-33 272.5 19.0 283 397-769 86-373 (375)
22 1vgv_A UDP-N-acetylglucosamine 100.0 9.2E-28 3.2E-32 267.8 18.5 293 396-770 76-374 (384)
23 2bfw_A GLGA glycogen synthase; 99.9 1.2E-26 4E-31 235.5 19.9 192 526-757 2-200 (200)
24 3t5t_A Putative glycosyltransf 99.9 4.2E-25 1.4E-29 254.3 23.2 317 395-767 134-468 (496)
25 3qhp_A Type 1 capsular polysac 99.9 3.8E-25 1.3E-29 217.8 18.0 163 574-764 2-166 (166)
26 1v4v_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.7E-28 234.6 20.6 266 408-767 90-359 (376)
27 2xci_A KDO-transferase, 3-deox 99.9 5.3E-23 1.8E-27 231.0 19.0 205 473-757 150-365 (374)
28 2f9f_A First mannosyl transfer 99.9 6.5E-23 2.2E-27 205.3 14.2 152 571-748 20-174 (177)
29 3otg_A CALG1; calicheamicin, T 99.8 5.3E-19 1.8E-23 198.9 24.9 163 571-770 240-408 (412)
30 3rhz_A GTF3, nucleotide sugar 99.8 1.4E-18 4.8E-23 192.4 20.5 247 408-767 73-331 (339)
31 3s2u_A UDP-N-acetylglucosamine 99.8 1.9E-17 6.3E-22 185.3 29.2 342 279-768 1-354 (365)
32 2iyf_A OLED, oleandomycin glyc 99.8 2E-17 6.9E-22 187.6 24.9 160 572-768 231-397 (430)
33 3tsa_A SPNG, NDP-rhamnosyltran 99.8 3.3E-18 1.1E-22 191.5 13.6 160 573-768 218-386 (391)
34 3dzc_A UDP-N-acetylglucosamine 99.7 2.9E-17 1E-21 185.7 18.3 290 393-767 98-392 (396)
35 4fzr_A SSFS6; structural genom 99.7 1.2E-17 4.1E-22 187.7 14.9 156 572-767 226-397 (398)
36 3oti_A CALG3; calicheamicin, T 99.7 8.4E-16 2.9E-20 172.8 23.2 157 572-769 231-396 (398)
37 3ot5_A UDP-N-acetylglucosamine 99.7 1.2E-16 4.1E-21 181.2 15.5 269 393-749 101-373 (403)
38 3ia7_A CALG4; glycosysltransfe 99.7 1.3E-15 4.6E-20 170.2 22.3 161 571-769 229-397 (402)
39 2p6p_A Glycosyl transferase; X 99.6 3E-14 1E-18 159.0 25.3 155 573-768 210-377 (384)
40 3rsc_A CALG2; TDP, enediyne, s 99.6 6.2E-14 2.1E-18 158.0 26.0 160 572-769 246-412 (415)
41 2yjn_A ERYCIII, glycosyltransf 99.5 7.4E-13 2.5E-17 151.1 24.0 155 574-768 268-433 (441)
42 2c4m_A Glycogen phosphorylase; 99.5 6E-14 2E-18 167.0 12.7 330 409-770 289-717 (796)
43 1l5w_A Maltodextrin phosphoryl 99.5 2.8E-13 9.6E-18 161.3 14.7 331 409-770 299-728 (796)
44 4hwg_A UDP-N-acetylglucosamine 99.5 1.6E-13 5.5E-18 154.5 11.7 283 393-767 81-372 (385)
45 2gj4_A Glycogen phosphorylase, 99.5 1.1E-12 3.6E-17 156.9 19.0 258 470-759 431-742 (824)
46 3h4t_A Glycosyltransferase GTF 99.4 1.4E-11 4.7E-16 139.2 22.8 154 572-768 220-380 (404)
47 2iya_A OLEI, oleandomycin glyc 99.4 7.6E-11 2.6E-15 133.4 27.9 159 572-768 254-419 (424)
48 3q3e_A HMW1C-like glycosyltran 99.3 4E-11 1.4E-15 140.4 18.4 186 564-776 431-628 (631)
49 4amg_A Snogd; transferase, pol 99.3 2.6E-11 9E-16 135.4 15.4 158 572-768 236-398 (400)
50 1iir_A Glycosyltransferase GTF 99.3 2.1E-10 7.3E-15 129.6 21.6 136 573-750 238-381 (415)
51 1rrv_A Glycosyltransferase GTF 99.2 3.2E-10 1.1E-14 128.1 18.3 136 573-750 237-382 (416)
52 2o6l_A UDP-glucuronosyltransfe 99.0 1.5E-09 5.2E-14 107.0 10.2 133 573-745 21-162 (170)
53 4gyw_A UDP-N-acetylglucosamine 98.1 5.7E-05 1.9E-09 91.5 19.7 182 562-770 513-703 (723)
54 2c1x_A UDP-glucose flavonoid 3 98.0 0.00043 1.5E-08 79.3 22.6 94 642-751 324-425 (456)
55 2vch_A Hydroquinone glucosyltr 97.9 0.0087 3E-07 68.8 31.5 50 682-731 368-427 (480)
56 2pq6_A UDP-glucuronosyl/UDP-gl 97.9 0.0054 1.9E-07 70.5 29.2 151 573-751 295-452 (482)
57 2acv_A Triterpene UDP-glucosyl 97.8 0.0034 1.2E-07 71.9 26.3 134 573-731 276-423 (463)
58 3hbf_A Flavonoid 3-O-glucosylt 97.6 0.031 1.1E-06 63.8 29.8 144 573-750 273-426 (454)
59 3hbm_A UDP-sugar hydrolase; PS 97.3 0.0098 3.3E-07 63.6 19.7 94 574-698 158-251 (282)
60 1ygp_A Yeast glycogen phosphor 97.0 0.0092 3.2E-07 71.6 17.0 142 567-717 588-761 (879)
61 1psw_A ADP-heptose LPS heptosy 94.8 0.068 2.3E-06 57.9 9.3 100 574-697 181-286 (348)
62 3tov_A Glycosyl transferase fa 92.6 0.49 1.7E-05 51.7 10.8 102 571-697 182-286 (349)
63 2jzc_A UDP-N-acetylglucosamine 90.3 0.29 9.8E-06 50.4 5.5 73 644-730 115-196 (224)
64 2gt1_A Lipopolysaccharide hept 88.6 1.4 4.7E-05 47.1 9.7 99 573-697 178-278 (326)
65 3l7i_A Teichoic acid biosynthe 74.5 7.6 0.00026 46.5 9.5 133 564-731 530-681 (729)
66 2dvz_A BUGE, putative exported 69.8 60 0.0021 34.5 14.3 149 575-749 116-281 (314)
67 2f5x_A BUGD; periplasmic bindi 62.1 1E+02 0.0036 32.6 14.3 149 575-749 112-277 (312)
68 3kht_A Response regulator; PSI 61.8 53 0.0018 29.3 10.5 111 605-732 5-127 (144)
69 3heb_A Response regulator rece 59.8 72 0.0025 28.8 11.2 110 605-731 4-133 (152)
70 3h5i_A Response regulator/sens 59.7 90 0.0031 27.7 11.7 109 605-732 5-123 (140)
71 1k68_A Phytochrome response re 59.4 90 0.0031 27.2 11.9 110 606-732 3-130 (140)
72 1k66_A Phytochrome response re 58.4 92 0.0032 27.5 11.6 111 605-732 6-137 (149)
73 2zay_A Response regulator rece 57.8 81 0.0028 28.1 11.1 110 605-733 8-128 (147)
74 3grc_A Sensor protein, kinase; 55.8 97 0.0033 27.3 11.1 110 605-733 6-127 (140)
75 2qpq_A Protein BUG27; alpha/be 53.8 74 0.0025 33.5 11.4 149 575-749 103-268 (301)
76 2pln_A HP1043, response regula 53.0 51 0.0017 29.2 8.7 106 604-731 17-131 (137)
77 4b4o_A Epimerase family protei 52.1 7.2 0.00025 40.7 3.0 19 320-342 15-33 (298)
78 3h1g_A Chemotaxis protein CHEY 51.9 1.2E+02 0.0041 26.4 11.5 108 606-731 6-125 (129)
79 3cg4_A Response regulator rece 49.9 1.3E+02 0.0046 26.3 11.2 109 605-732 7-126 (142)
80 2phj_A 5'-nucleotidase SURE; S 48.8 71 0.0024 33.0 9.7 37 280-343 1-37 (251)
81 2qvg_A Two component response 46.8 1.4E+02 0.0049 26.1 10.8 109 605-730 7-132 (143)
82 1j9j_A Stationary phase surviV 45.3 1.7E+02 0.0057 30.1 11.9 35 406-440 83-128 (247)
83 3ius_A Uncharacterized conserv 44.6 8.9 0.00031 39.5 2.2 35 278-342 3-37 (286)
84 1uan_A Hypothetical protein TT 43.4 20 0.00069 36.4 4.6 40 280-342 1-40 (227)
85 3lkv_A Uncharacterized conserv 42.4 1.7E+02 0.0057 30.4 11.9 99 589-699 126-228 (302)
86 1i3c_A Response regulator RCP1 42.1 1.9E+02 0.0064 25.8 11.0 110 605-731 8-135 (149)
87 2vzf_A NADH-dependent FMN redu 41.6 23 0.00079 34.7 4.6 37 279-333 1-38 (197)
88 3gt7_A Sensor protein; structu 41.5 1.5E+02 0.005 26.8 10.1 112 605-735 7-129 (154)
89 3dqp_A Oxidoreductase YLBE; al 39.6 1.5E+02 0.005 28.8 10.4 19 320-342 15-33 (219)
90 3ph3_A Ribose-5-phosphate isom 39.4 22 0.00074 34.6 3.8 36 275-333 15-50 (169)
91 4egb_A DTDP-glucose 4,6-dehydr 38.5 1.9E+02 0.0066 30.0 11.8 20 320-341 39-58 (346)
92 3to5_A CHEY homolog; alpha(5)b 38.4 1.8E+02 0.006 26.6 9.9 110 604-731 11-131 (134)
93 3eul_A Possible nitrate/nitrit 37.9 1.7E+02 0.0059 26.1 9.9 112 604-732 14-134 (152)
94 2qzj_A Two-component response 37.4 2.1E+02 0.0072 25.0 10.4 109 605-732 4-120 (136)
95 3n53_A Response regulator rece 36.7 2.1E+02 0.0073 24.9 10.6 75 657-731 35-120 (140)
96 3ilh_A Two component response 36.4 2.2E+02 0.0074 24.9 10.4 110 605-731 9-137 (146)
97 2ixd_A LMBE-related protein; h 35.4 30 0.001 35.5 4.4 40 280-342 3-42 (242)
98 4dad_A Putative pilus assembly 35.4 81 0.0028 28.1 7.1 111 605-732 20-140 (146)
99 4e7p_A Response regulator; DNA 35.3 1.4E+02 0.0049 26.6 8.9 75 657-731 55-138 (150)
100 2e6c_A 5'-nucleotidase SURE; S 34.7 1.5E+02 0.005 30.5 9.5 34 407-440 85-129 (244)
101 3p0r_A Azoreductase; structura 33.6 35 0.0012 34.0 4.5 39 279-333 3-43 (211)
102 3jte_A Response regulator rece 33.5 2.4E+02 0.0083 24.6 11.3 107 606-731 4-121 (143)
103 4gi5_A Quinone reductase; prot 33.4 40 0.0014 35.4 5.1 40 280-341 22-61 (280)
104 2rdm_A Response regulator rece 33.2 2.3E+02 0.0079 24.2 11.0 108 605-731 5-121 (132)
105 3hzh_A Chemotaxis response reg 32.7 1.7E+02 0.0058 26.4 9.0 75 657-731 70-155 (157)
106 1d4a_A DT-diaphorase, quinone 32.0 45 0.0015 34.7 5.2 37 279-333 1-37 (273)
107 3m2p_A UDP-N-acetylglucosamine 31.8 24 0.00082 36.8 3.1 19 320-342 17-35 (311)
108 2j48_A Two-component sensor ki 31.0 1.3E+02 0.0045 24.9 7.4 106 607-731 3-116 (119)
109 3s5p_A Ribose 5-phosphate isom 30.3 41 0.0014 32.5 4.1 33 278-333 19-51 (166)
110 1jbe_A Chemotaxis protein CHEY 30.0 2.6E+02 0.0088 23.8 12.1 109 605-731 4-123 (128)
111 2m1z_A LMO0427 protein; homolo 29.8 52 0.0018 29.4 4.4 42 279-342 1-42 (106)
112 1rcu_A Conserved hypothetical 29.4 26 0.00089 34.9 2.6 68 661-730 112-192 (195)
113 2fzv_A Putative arsenical resi 29.2 56 0.0019 34.3 5.3 52 260-333 42-93 (279)
114 3cnb_A DNA-binding response re 28.6 2.9E+02 0.0098 23.9 9.8 110 605-732 8-129 (143)
115 2qr3_A Two-component system re 28.6 2.1E+02 0.0072 24.8 8.7 107 606-731 4-124 (140)
116 1l5x_A SurviVal protein E; str 28.4 2.5E+02 0.0086 29.4 10.1 37 281-344 1-37 (280)
117 2vvp_A Ribose-5-phosphate isom 27.9 32 0.0011 33.2 2.9 30 281-333 4-33 (162)
118 2vvr_A Ribose-5-phosphate isom 27.2 42 0.0014 31.9 3.5 30 281-333 2-31 (149)
119 3hdg_A Uncharacterized protein 26.9 3.1E+02 0.01 23.7 9.9 108 605-731 7-123 (137)
120 3i42_A Response regulator rece 26.7 2.9E+02 0.01 23.4 9.9 107 606-731 4-120 (127)
121 2qsj_A DNA-binding response re 26.4 2.6E+02 0.0087 24.9 9.0 109 605-731 3-122 (154)
122 3ikm_A DNA polymerase subunit 26.0 50 0.0017 40.9 4.6 79 160-246 6-108 (1172)
123 3qay_A Endolysin; amidase A/B 26.0 1E+02 0.0034 30.0 6.2 52 281-341 2-55 (180)
124 3l4b_C TRKA K+ channel protien 26.0 1.4E+02 0.0049 29.2 7.6 18 320-341 14-31 (218)
125 3ew7_A LMO0794 protein; Q8Y8U8 25.9 36 0.0012 33.1 3.0 19 320-342 15-33 (221)
126 2q62_A ARSH; alpha/beta, flavo 25.6 69 0.0024 32.8 5.2 50 263-333 19-69 (247)
127 3lua_A Response regulator rece 25.6 1.9E+02 0.0064 25.3 7.7 108 605-731 4-125 (140)
128 3t6k_A Response regulator rece 25.5 3.3E+02 0.011 23.6 11.2 108 606-732 5-123 (136)
129 3tpc_A Short chain alcohol deh 25.1 2.2E+02 0.0074 28.5 8.9 19 320-342 22-40 (257)
130 3k7p_A Ribose 5-phosphate isom 24.7 42 0.0014 32.9 3.0 32 279-333 21-54 (179)
131 1dbw_A Transcriptional regulat 24.5 3.2E+02 0.011 23.1 10.6 108 605-731 3-119 (126)
132 3m6m_D Sensory/regulatory prot 24.4 3E+02 0.01 24.2 9.0 108 605-731 14-134 (143)
133 2v4n_A Multifunctional protein 24.4 2.3E+02 0.0078 29.2 8.8 37 281-344 2-38 (254)
134 3h2s_A Putative NADH-flavin re 24.3 40 0.0014 32.9 3.0 19 320-342 15-33 (224)
135 3hdv_A Response regulator; PSI 24.3 3.4E+02 0.012 23.3 10.8 108 605-731 7-125 (136)
136 2gkg_A Response regulator homo 24.1 3.2E+02 0.011 22.9 10.0 106 606-731 6-123 (127)
137 2cp8_A NEXT to BRCA1 gene 1 pr 23.9 81 0.0028 24.7 3.9 20 221-240 2-21 (54)
138 3crn_A Response regulator rece 23.8 3.5E+02 0.012 23.3 9.2 107 606-731 4-119 (132)
139 3tem_A Ribosyldihydronicotinam 23.6 65 0.0022 32.5 4.5 39 281-341 2-40 (228)
140 3lte_A Response regulator; str 23.6 3.4E+02 0.012 23.1 10.7 108 605-731 6-123 (132)
141 3eod_A Protein HNR; response r 23.6 2.7E+02 0.0092 23.8 8.3 108 605-731 7-124 (130)
142 2kyr_A Fructose-like phosphotr 23.5 85 0.0029 28.3 4.6 41 279-341 4-44 (111)
143 3gl9_A Response regulator; bet 23.2 3.5E+02 0.012 23.0 10.3 106 607-731 4-120 (122)
144 3cg0_A Response regulator rece 23.0 3.6E+02 0.012 23.1 10.5 108 605-731 9-126 (140)
145 3gem_A Short chain dehydrogena 22.5 1.2E+02 0.0042 30.7 6.4 19 320-342 42-60 (260)
146 2rjn_A Response regulator rece 22.2 4.1E+02 0.014 23.5 9.7 108 605-731 7-124 (154)
147 1psw_A ADP-heptose LPS heptosy 22.2 1.8E+02 0.006 30.4 7.9 29 407-438 78-107 (348)
148 3ors_A N5-carboxyaminoimidazol 22.2 2.3E+02 0.0079 27.2 7.6 78 607-697 6-87 (163)
149 1xmp_A PURE, phosphoribosylami 22.1 5.4E+02 0.018 24.8 11.6 122 607-746 14-154 (170)
150 2x4g_A Nucleoside-diphosphate- 21.9 48 0.0016 34.8 3.2 19 320-342 28-46 (342)
151 2qxy_A Response regulator; reg 21.8 2.4E+02 0.0083 24.6 7.7 108 605-731 4-119 (142)
152 3dfu_A Uncharacterized protein 21.8 69 0.0023 32.7 4.2 38 710-753 178-215 (232)
153 1xv5_A AGT, DNA alpha-glucosyl 21.6 6.1E+02 0.021 25.3 28.1 157 576-755 199-385 (401)
154 3i83_A 2-dehydropantoate 2-red 21.5 46 0.0016 35.2 2.9 18 321-342 17-34 (320)
155 1dcf_A ETR1 protein; beta-alph 21.3 3.9E+02 0.013 22.9 10.7 108 605-731 7-127 (136)
156 1p6q_A CHEY2; chemotaxis, sign 21.2 3.8E+02 0.013 22.7 9.0 108 606-731 7-125 (129)
157 3hn2_A 2-dehydropantoate 2-red 21.1 56 0.0019 34.4 3.5 17 321-341 17-33 (312)
158 3slg_A PBGP3 protein; structur 20.9 89 0.003 33.2 5.2 19 320-342 39-58 (372)
159 2ywr_A Phosphoribosylglycinami 20.8 4.5E+02 0.015 26.0 10.1 24 393-419 67-90 (216)
160 1ys7_A Transcriptional regulat 20.8 5.5E+02 0.019 24.5 12.4 110 605-733 7-125 (233)
161 4em8_A Ribose 5-phosphate isom 20.8 75 0.0026 30.2 3.8 31 280-333 7-37 (148)
162 2wqk_A 5'-nucleotidase SURE; S 20.4 4.1E+02 0.014 27.2 9.8 33 407-439 83-126 (251)
163 3mm4_A Histidine kinase homolo 20.4 4.4E+02 0.015 25.1 9.8 107 605-731 61-194 (206)
164 3bfv_A CAPA1, CAPB2, membrane 20.0 1.3E+02 0.0043 31.1 5.9 34 189-224 6-39 (271)
165 3en0_A Cyanophycinase; serine 20.0 5E+02 0.017 27.1 10.6 119 573-702 26-156 (291)
166 1kjn_A MTH0777; hypotethical p 20.0 1.3E+02 0.0043 28.7 5.1 35 280-333 6-40 (157)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=5.8e-175 Score=1583.20 Aligned_cols=804 Identities=55% Similarity=0.963 Sum_probs=752.4
Q ss_pred CCCCccccchHhhHHHHHHHcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhcccccCcHHHHHhhcceeeec
Q 002909 4 SPSLKRSDTIADTMPDALRQSRYYMKKCFSRFVAKGKRLMKRHHLMDEVEKSIEDKIERGKVLEGLLGYILSSTQEAAVV 83 (867)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (867)
+|+|+|++||+|+++++|++||++|++||++|+++||+||++|||+++|+++|+. +++++.+|+||++|++||||||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (816)
T 3s28_A 5 ERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQ--TRKKLEGGPFFDLLKSTQEAIVL 82 (816)
T ss_dssp ----------------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTTS--CGGGCCCSTHHHHHHTEEEEEEC
T ss_pred ccccccchhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh--hhcccccCcHHHHHHhhhheeec
Confidence 4899999999999999999999999999999999999999999999999999933 44788999999999999999999
Q ss_pred CCeEEEEEcCCCceEEEEEEecCCcceeecChhHhhhccceeccCCCCCCCCceeeecccCcCCCCCCCCCCCcCcchhh
Q 002909 84 PPNVAFAVRPNPGSWEYVKVNSEDLTVDGINVLEYLKFKETIFDQDWAKDENALELDFGAMDFSSPHLTLSSSIGNGVNY 163 (867)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (867)
|||||||||||||+|||||||++||+||+|||+|||+|||+|||+. ++++++|||||+|||++||++++|+||||||+|
T Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (816)
T 3s28_A 83 PPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGV-KNGNFTLELDFEPFNASIPRPTLHKYIGNGVDF 161 (816)
T ss_dssp SSEEEEEEEEETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSS-CCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHH
T ss_pred CCeEEEEEcCCCcceEEEEEEhhhCceeeecHHHHHHhHHHhcCCC-CCCCCceEEeccccccCCCCCCCcccccCcHHH
Confidence 9999999999999999999999999999999999999999999995 899999999999999999999999999999999
Q ss_pred hhhhhhccccCCchhhHHHHHHHHhcccCCceeeccCcCCCHHHHHHHHHHHHHHhccCCCCCChhHHHHHHhhcCCccc
Q 002909 164 VSKFMSTRLSANSEKAKQFLDYLLALNHRGEQLMINDTLDTVDKLQAALIAAEVSISDLPKDTPYQEFQQRFKEWGFEKG 243 (867)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (867)
||||||||||+|++++++||+||+.|+|+|++|||||||+|+++|+++|++|++||+++|+||||++|+++||+||||||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (816)
T 3s28_A 162 LNRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERG 241 (816)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBC
T ss_pred HHHHHHhhhcCChhhhHHHHHHHHHcccCCeeeeccCCcCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhhcCCChhhHHHHHhcCCCcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHH
Q 002909 244 WGNTAERVRETMRLFSEALQAPDAAKLQVLFSRLPNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLL 323 (867)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~~~~p~~~~l~~f~~r~pm~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~ 323 (867)
|||||+||+|||++|+|+|++|||++||+|++|+||+|||+++|+|||++|.+++|+||||||++||+||||||+++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~ 321 (816)
T 3s28_A 242 WGDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQ 321 (816)
T ss_dssp SCSBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhcCCCcccHHHHhccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCceeeccEEEecCCCCCCCCCCCCccccccCCCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHH
Q 002909 324 RIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPIYDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKIL 403 (867)
Q Consensus 324 ~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~ 403 (867)
+|+++||+|+++|+|+|+.++++.|+.|.++.+.+.+++|++|+|+|+++.++++++|++++.+|+|+..|...+.+.+.
T Consensus 322 ~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il 401 (816)
T 3s28_A 322 RIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELS 401 (816)
T ss_dssp HHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHCCCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877889999999999999999988888888
Q ss_pred HHcCCCCeEEEECCCChHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEec
Q 002909 404 DLMEGKPDLIIGNYSDGNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITS 483 (867)
Q Consensus 404 ~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~ 483 (867)
...+++|||||+|++.+++++.++++++|+|+|+|.|++...++..++.+|..+...|++.+++.+|..+++.||.||++
T Consensus 402 ~~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~ 481 (816)
T 3s28_A 402 KELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITS 481 (816)
T ss_dssp HHCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEES
T ss_pred HhcCCCCeEEEeCCchHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEEC
Confidence 77777999999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred CHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccc
Q 002909 484 TYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNS 563 (867)
Q Consensus 484 S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~ 563 (867)
|+++++.+.+.+++|.++.++++|++|++++||+++++|+.|||||+|.+.|.|......++...++.++..++++.+.+
T Consensus 482 S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r 561 (816)
T 3s28_A 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENK 561 (816)
T ss_dssp CHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBT
T ss_pred CHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999988777777777888889999999999
Q ss_pred cccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCC
Q 002909 564 EHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQG 643 (867)
Q Consensus 564 ~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~ 643 (867)
+.+|++.++++++|+++||+++.||++.+++|++.+.+.+++++|+|+|++++ ..+.+.++.++.++++++++++++.+
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~-~~~~~~e~~~~~~~L~~li~~lgL~~ 640 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRR-KESKDNEEKAEMKKMYDLIEEYKLNG 640 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTT-SCCCCHHHHHHHHHHHHHHHHTTCBB
T ss_pred HHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCc-ccccchhhHHHHHHHHHHHHHcCCCC
Confidence 99999888899999999999999999999999999988778999999999986 66778888899999999999999999
Q ss_pred cEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHH
Q 002909 644 QFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDES 723 (867)
Q Consensus 644 ~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~l 723 (867)
+|+|+|++.+.++.+++++++++++|+||+||.+|+||++++|||+||+|||+|+.||+.|++.++.+|++++|+|++++
T Consensus 641 ~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~L 720 (816)
T 3s28_A 641 QFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQA 720 (816)
T ss_dssp BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHH
T ss_pred cEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHH
Confidence 99999998887788999999996689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhHHHHHHHhhccchHHHHHHHHHHHHhhhhhccc
Q 002909 724 SNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGSIYGFWRQINKEPKLAKQRYIQMFYSLLFRKLAS 803 (867)
Q Consensus 724 A~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly~~~~f~~~~~~~~~~~~~~yle~~~~L~~r~la~ 803 (867)
+++|.++++++..|++.+++|+++|++++.++|||+.++++++++|+.|++|++++++++++++||+||||.|+||++|+
T Consensus 721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~~~~~ 800 (816)
T 3s28_A 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQ 800 (816)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHhhhhHHh
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 002909 804 NVPIKVPE 811 (867)
Q Consensus 804 ~vpl~~~~ 811 (867)
++|+++++
T Consensus 801 ~~~~~~~~ 808 (816)
T 3s28_A 801 AVPLAQDD 808 (816)
T ss_dssp HSCCCCC-
T ss_pred cCCCccch
Confidence 99998875
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=5.1e-45 Score=423.52 Aligned_cols=427 Identities=29% Similarity=0.489 Sum_probs=312.4
Q ss_pred CCcceEEEEccCccCCccc--ccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCcc
Q 002909 278 PNMFNVVIFSPHGYFGQAD--VLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQEL 355 (867)
Q Consensus 278 pm~~rI~ivs~hg~p~~~~--vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~ 355 (867)
.+.|||++++++++|...+ +.+.|..||.++++. +|+++|+++||+|+ |+|..........+....
T Consensus 5 ~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~ 72 (499)
T 2r60_A 5 TRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGEI 72 (499)
T ss_dssp --CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCSE
T ss_pred cccceEEEEecCCCccccccccCCCCCCCCeeehHH--------HHHHHHHhcCCeEE----EEeCCCCcccccchhhhH
Confidence 4468999999999884322 345578899999999 56667778999999 888743211101111122
Q ss_pred ccccCCCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCcE
Q 002909 356 EPIYDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGITQ 435 (867)
Q Consensus 356 e~i~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~ 435 (867)
+.+...++++++++|..... +..+..+|.++..|...+.+.+.+. ..+|||||+|.+..++++.++++..++|+
T Consensus 73 ~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p~ 146 (499)
T 2r60_A 73 DYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLPF 146 (499)
T ss_dssp EECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCCE
T ss_pred HhccCCCCeEEEEecCCCcC-----CcCHHHHHHHHHHHHHHHHHHHHhc-CCCCCEEEEcCCcchHHHHHHHHhcCCcE
Confidence 22212357899999875421 2233445666666665666655543 24899999998767777888888899999
Q ss_pred EEEEcCCccccccc---chhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCC--CCccccccccccccce
Q 002909 436 ATIAHALEKSKYED---SDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDR--PGQYESHTAFTMPGLC 510 (867)
Q Consensus 436 V~t~H~l~~~~~~~---s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~--~gqY~s~~~~~lp~l~ 510 (867)
|++.|+........ .+.....+...+++......+..+++.+|.||++|+..++.+.+. +
T Consensus 147 v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~--------------- 211 (499)
T 2r60_A 147 TFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLY--------------- 211 (499)
T ss_dssp EEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGG---------------
T ss_pred EEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcc---------------
Confidence 99999975433210 000000111122222333345678899999999999877643322 1
Q ss_pred eeecc-C----CCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccc-----cccCCCCcEEEEE
Q 002909 511 RVVSG-I----NVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIG-----YLADRKKPIIFSM 580 (867)
Q Consensus 511 ~v~~G-I----~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lG-----ll~~~~k~iIl~v 580 (867)
| + + ..++.|||||+|.+.|.+......+. ..++.+| + ++++++|+++
T Consensus 212 ----g~~~~~~~--~~ki~vi~ngvd~~~~~~~~~~~~~~---------------~~r~~~~~~~~~~--~~~~~~i~~v 268 (499)
T 2r60_A 212 ----RGAVNVED--DDKFSVIPPGVNTRVFDGEYGDKIKA---------------KITKYLERDLGSE--RMELPAIIAS 268 (499)
T ss_dssp ----TTTCCTTC--GGGEEECCCCBCTTTSSSCCCHHHHH---------------HHHHHHHHHSCGG--GTTSCEEEEC
T ss_pred ----cccccccC--CCCeEEECCCcChhhcCccchhhhHH---------------HHHHHhccccccc--CCCCcEEEEe
Confidence 2 2 2 56899999999999887764311100 0113445 4 5678899999
Q ss_pred eccCCcCChHHHHHHHHHhHccCCC-eEEEEEeCCCCCCCC---CChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCC
Q 002909 581 ARLDTVKNITGLTEWYGKNKRLRNM-VNLVVVAGFFDPSKS---HDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYR 656 (867)
Q Consensus 581 GRL~~~Kgid~LieA~~~l~~~~~~-v~LvIVG~g~~~~~~---~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~ 656 (867)
||+.+.||++.+++|+..+.+..++ +.|+|+|++..+... -+.++.+|.+.++++++++++.++|+|+|+ ++
T Consensus 269 Grl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~----v~ 344 (499)
T 2r60_A 269 SRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPL----NS 344 (499)
T ss_dssp SCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEEC----CS
T ss_pred ecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCC----CC
Confidence 9999999999999999998765444 589999983221000 013344567889999999999999999995 55
Q ss_pred hHHHHHHHHccC----cEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 657 NGELYRCIADTK----GAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 657 ~~el~~~la~~a----DvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
.+++..+|+. | |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++
T Consensus 345 ~~~~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll- 422 (499)
T 2r60_A 345 QQELAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF- 422 (499)
T ss_dssp HHHHHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHh-cCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHH-
Confidence 6799999997 9 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 733 KCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 733 ~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
+|++.+++|++++++++.++|||+.+++++.++|
T Consensus 423 ---~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y 456 (499)
T 2r60_A 423 ---ESEETWSAYQEKGKQRVEERYTWQETARGYLEVI 456 (499)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred ---hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8999999999999999988899999999999954
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=7.3e-43 Score=396.97 Aligned_cols=402 Identities=18% Similarity=0.261 Sum_probs=292.4
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCccccc
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPI 358 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i 358 (867)
.+|||++++.+++|. ..+|.+..||.++++. +|+++|.++||+|+ |+|..... ........
T Consensus 19 ~mmkIl~i~~~~~p~--~~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~-----~~~~~~~~ 79 (438)
T 3c48_A 19 SHMRVAMISMHTSPL--QQPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRP-----SQGEIVRV 79 (438)
T ss_dssp CCCEEEEECTTSCTT--CC-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCG-----GGCSEEEE
T ss_pred chheeeeEEeecccc--ccCCCCCCCCHHHHHH--------HHHHHHHhcCCEEE----EEecCCCC-----CCcccccc
Confidence 468999999888762 2234456899999999 56667778999999 88874211 00111111
Q ss_pred cCCCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCcEEEE
Q 002909 359 YDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGITQATI 438 (867)
Q Consensus 359 ~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~V~t 438 (867)
.+++.+++++...... ..+..++.++..|...+.+...+.. .+|||||+|.+..++++.++++..++|+|++
T Consensus 80 --~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~ 151 (438)
T 3c48_A 80 --AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRREK-VTYDLIHSHYWLSGQVGWLLRDLWRIPLIHT 151 (438)
T ss_dssp --ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHHHHHHHTCCEEEE
T ss_pred --cCCeEEEEecCCCccc-----cchhHHHHHHHHHHHHHHHHHHhcc-CCCCEEEeCCccHHHHHHHHHHHcCCCEEEE
Confidence 2378888887654221 1223445555556555555522221 2499999998766777777888899999999
Q ss_pred EcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCC
Q 002909 439 AHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINV 518 (867)
Q Consensus 439 ~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~ 518 (867)
.|+.......... ... ..........+...++.+|.|+++|....+.+.+ ..|++
T Consensus 152 ~h~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~-------------------~~g~~- 206 (438)
T 3c48_A 152 AHTLAAVKNSYRD----DSD-TPESEARRICEQQLVDNADVLAVNTQEEMQDLMH-------------------HYDAD- 206 (438)
T ss_dssp CSSCHHHHSCC--------C-CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHH-------------------HHCCC-
T ss_pred ecCCccccccccc----ccC-CcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHH-------------------HhCCC-
Confidence 9997543321100 000 0000111223456789999999999877663221 12443
Q ss_pred CCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHH
Q 002909 519 FDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGK 598 (867)
Q Consensus 519 ~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~ 598 (867)
..++.+||||+|.+.|.+....... ..++.+|+ ++++++|+++||+.+.||++.+++|+..
T Consensus 207 -~~k~~vi~ngvd~~~~~~~~~~~~~----------------~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 267 (438)
T 3c48_A 207 -PDRISVVSPGADVELYSPGNDRATE----------------RSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVAA 267 (438)
T ss_dssp -GGGEEECCCCCCTTTSCCC----CH----------------HHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHHH
T ss_pred -hhheEEecCCccccccCCcccchhh----------------hhHHhcCC--CCCCcEEEEEeeecccCCHHHHHHHHHH
Confidence 6789999999999888775432100 01145666 6778999999999999999999999999
Q ss_pred hHccCC--CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCC
Q 002909 599 NKRLRN--MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL 676 (867)
Q Consensus 599 l~~~~~--~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~ 676 (867)
+.+..| +++|+|+|+... + ..+.+.++++++++++.++|.|+|+ ++.+++..+|+. ||++|+||.
T Consensus 268 l~~~~p~~~~~l~i~G~~~~-----~---g~~~~~l~~~~~~~~l~~~v~~~g~----~~~~~~~~~~~~-adv~v~ps~ 334 (438)
T 3c48_A 268 LFDRDPDRNLRVIICGGPSG-----P---NATPDTYRHMAEELGVEKRIRFLDP----RPPSELVAVYRA-ADIVAVPSF 334 (438)
T ss_dssp HHHHCTTCSEEEEEECCBC--------------CHHHHHHHHTTCTTTEEEECC----CCHHHHHHHHHH-CSEEEECCS
T ss_pred HHhhCCCcceEEEEEeCCCC-----C---CcHHHHHHHHHHHcCCCCcEEEcCC----CChHHHHHHHHh-CCEEEECcc
Confidence 988766 899999998211 0 0125678889999999999999995 556789999997 999999999
Q ss_pred CCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC
Q 002909 677 YEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECY 756 (867)
Q Consensus 677 ~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~y 756 (867)
+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ .|++.+++|++++++++.+ |
T Consensus 335 ~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~-~ 409 (438)
T 3c48_A 335 NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEHART-F 409 (438)
T ss_dssp CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHH-H
T ss_pred ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHh-C
Confidence 9999999999999999999999999999999999999999999999999999988 7999999999999999977 9
Q ss_pred CHHHHHHHHHHHH
Q 002909 757 TWKIYANKVLNMG 769 (867)
Q Consensus 757 sw~~~a~~ll~ly 769 (867)
||+.++++++++|
T Consensus 410 s~~~~~~~~~~~~ 422 (438)
T 3c48_A 410 SWAATAAQLSSLY 422 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999954
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=9.2e-43 Score=394.07 Aligned_cols=398 Identities=16% Similarity=0.154 Sum_probs=294.9
Q ss_pred cceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCC---------
Q 002909 280 MFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTK--------- 350 (867)
Q Consensus 280 ~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~--------- 350 (867)
.|||++++++.+| +..||.++++. +|+++|+++||+|+ |+|+..+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred ceEEEEEecccCC--------cccCCHHHHHH--------HHHHHHHHCCCeEE----EEecCCCCchhhhhccccccCc
Confidence 4899999988765 25799999999 56667888999999 9997543311100
Q ss_pred -CCCccccccCCCCeEEEEccCCCcccccccccccccchh-hHH-------HHHHHHHHHHHHHc--CCCCeEEEECCCC
Q 002909 351 -CSQELEPIYDTKHSHILRIPFKTEQAILPQWVSRFDIYP-YLG-------RFAQDATAKILDLM--EGKPDLIIGNYSD 419 (867)
Q Consensus 351 -~~~~~e~i~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p-~l~-------~f~~~~~~~i~~~l--~~kPDIIh~h~~~ 419 (867)
...+.. ....+++.+++++. .. ..+..+++ +.. .|...+.+.+...+ ..+|||||+|.+.
T Consensus 62 ~~~~~~~-~~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 132 (439)
T 3fro_A 62 EVQVKVS-YEERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWH 132 (439)
T ss_dssp EEEEEEE-EEEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGG
T ss_pred ccceeee-eccCCCceEEEecc-hh-------ccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchh
Confidence 000000 00234788888876 21 12222222 111 24444444444331 5699999999988
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccc
Q 002909 420 GNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYE 499 (867)
Q Consensus 420 ~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~ 499 (867)
.++.+.++++..++|+|++.|+.....+.........+... .+......+..+++.+|.|+++|+...+. ..+
T Consensus 133 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~--- 205 (439)
T 3fro_A 133 TVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL-APYPDIDPEHTGGYIADIVTTVSRGYLID---EWG--- 205 (439)
T ss_dssp GHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGG-CCSSEECHHHHHHHHCSEEEESCHHHHHH---THH---
T ss_pred hhhhHHHHhhccCCCEEEEecccccccCchHHhCccccccc-cccceeeHhhhhhhhccEEEecCHHHHHH---Hhh---
Confidence 88888888889999999999998755432211111111100 01111234556889999999999877652 000
Q ss_pred cccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCc----hHhhhhccCCcchHHhhhcccccccccccccCCCCc
Q 002909 500 SHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYT----EKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKP 575 (867)
Q Consensus 500 s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~----~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~ 575 (867)
..+++ ..++.+||||+|.+.|.|.. .... ....++.+|+ +++ +
T Consensus 206 -------------~~~~~--~~~i~vi~ngvd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~~~-~ 252 (439)
T 3fro_A 206 -------------FFRNF--EGKITYVFNGIDCSFWNESYLTGSRDER---------------KKSLLSKFGM--DEG-V 252 (439)
T ss_dssp -------------HHGGG--TTSEEECCCCCCTTTSCGGGSCSCHHHH---------------HHHHHHHHTC--CSC-E
T ss_pred -------------hhhhc--CCceeecCCCCCchhcCcccccchhhhh---------------HHHHHHHcCC--CCC-c
Confidence 00122 77999999999999988762 1111 1112256776 555 9
Q ss_pred EEEEEeccC-CcCChHHHHHHHHHhHccC--CCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccccc
Q 002909 576 IIFSMARLD-TVKNITGLTEWYGKNKRLR--NMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQT 652 (867)
Q Consensus 576 iIl~vGRL~-~~Kgid~LieA~~~l~~~~--~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~ 652 (867)
+|+++||+. +.||++.+++|+..+.+.. ++++|+|+|+|+. .+.+.+++++++++ +.+.|.|+
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~----------~~~~~l~~~~~~~~--~~~~~~g~-- 318 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG--NVKVITEM-- 318 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH----------HHHHHHHHHHHHCT--TEEEECSC--
T ss_pred EEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh----------hHHHHHHHHHhhcC--CEEEEcCC--
Confidence 999999999 9999999999999998866 8999999999865 45578899999987 77889994
Q ss_pred CCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 653 DRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 653 d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
++.+++..+++. ||++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++
T Consensus 319 --~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll- 393 (439)
T 3fro_A 319 --LSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL- 393 (439)
T ss_dssp --CCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH-
T ss_pred --CCHHHHHHHHHH-CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHH-
Confidence 556899999997 999999999999999999999999999999999999999887 999999999999999999998
Q ss_pred Hhhc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 733 KCKT-DAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 733 ~~~~-dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
+ |++.+++|++++++.+ ++|||+.++++++++|
T Consensus 394 ---~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~ 427 (439)
T 3fro_A 394 ---ELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAY 427 (439)
T ss_dssp ---HHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHH
T ss_pred ---hcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHH
Confidence 5 8999999999999999 7899999999999954
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=5.7e-42 Score=402.74 Aligned_cols=325 Identities=17% Similarity=0.168 Sum_probs=237.8
Q ss_pred CCCeEEEECCCChHHHHHHHHHhc-------CCcEEEEEcCCcccccccc-hh-----hh---h--hcCcc---ccchhh
Q 002909 408 GKPDLIIGNYSDGNLVASLMASKL-------GITQATIAHALEKSKYEDS-DA-----KW---K--ELDPK---YHFSCQ 466 (867)
Q Consensus 408 ~kPDIIh~h~~~~~l~a~lla~~~-------gip~V~t~H~l~~~~~~~s-~~-----~~---~--~~~~~---y~f~~~ 466 (867)
..+||||+|.|.+++++.++.... ++|+|+|+|++........ .. .+ . ..... ..+...
T Consensus 152 ~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (536)
T 3vue_A 152 GEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRK 231 (536)
T ss_dssp CSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEE
T ss_pred CCCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccc
Confidence 457899999999988888876543 7999999998765432100 00 00 0 00000 001111
Q ss_pred hhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhc
Q 002909 467 FTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLT 546 (867)
Q Consensus 467 ~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~ 546 (867)
....+..+..||.|+|+|+..++.+....+. +..+.. ..+ ..++.+|+||||.+.|.|.++......
T Consensus 232 ~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~-----g~~l~~------~~~--~~~i~~I~NGiD~~~~~p~~d~~~~~~ 298 (536)
T 3vue_A 232 INWMKAGILEADRVLTVSPYYAEELISGIAR-----GCELDN------IMR--LTGITGIVNGMDVSEWDPSKDKYITAK 298 (536)
T ss_dssp EEHHHHHHHHCSEEEESCHHHHHHHHTTCCC-----CSSSCC------CSC--CCSCEECCCCCCTTTSCTTTCSSSSCC
T ss_pred hhHHHHHHHhccEEEEcCHHHhhhhhccccc-----cccccc------ccc--cCCeEEEECCcchhhcCCCCccccccc
Confidence 2234558899999999999877654433221 000000 112 568999999999999999765432221
Q ss_pred cC-CcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHH
Q 002909 547 SF-HPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREE 625 (867)
Q Consensus 547 ~~-~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee 625 (867)
.. ....+.+..++...++.+|+..+++.|+|+++||+.++||++.|++|+.++.+ .+.+|+|+|.|..
T Consensus 299 ~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~--------- 367 (536)
T 3vue_A 299 YDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK--------- 367 (536)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH---------
T ss_pred cchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh--hCCeEEEEeccCc---------
Confidence 11 11234455566667788999888999999999999999999999999999976 4789999999865
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccce
Q 002909 626 IAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEI 705 (867)
Q Consensus 626 ~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~Ei 705 (867)
.+...++.....+ .++|.+.+. .+.+++..+|+. ||+||+||++|+||++++|||+||+|||+|++||+.|+
T Consensus 368 -~~~~~~~~~~~~~--~~~v~~~~~----~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~ 439 (536)
T 3vue_A 368 -KFEKLLKSMEEKY--PGKVRAVVK----FNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDT 439 (536)
T ss_dssp -HHHHHHHHHHHHS--TTTEEEECS----CCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHH
T ss_pred -hHHHHHHHHHhhc--CCceEEEEe----ccHHHHHHHHHh-hheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchhe
Confidence 3344555555554 578999984 456677777876 99999999999999999999999999999999999999
Q ss_pred eecCceEE----------EeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 706 IIDGVSGF----------HIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 706 I~dg~~G~----------lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
|.||++|| +++|.|+++++++|.++++. .+++ .|++|.++++ .++|||+.+|++|+++|
T Consensus 440 V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~-~~~~-~~~~~~~~am---~~~fSW~~~A~~y~~ly 508 (536)
T 3vue_A 440 VIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKV-VGTP-AYEEMVRNCM---NQDLSWKGPAKNWENVL 508 (536)
T ss_dssp CCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHH-TTSH-HHHHHHHHHH---HSCCSSHHHHHHHHHHH
T ss_pred eeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHh-cCcH-HHHHHHHHHH---HhcCCHHHHHHHHHHHH
Confidence 99999999 67788999999999988743 2444 5788887774 47899999999999953
No 6
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=6.2e-40 Score=366.00 Aligned_cols=365 Identities=18% Similarity=0.233 Sum_probs=278.4
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCccccc
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPI 358 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i 358 (867)
++|||++++++..| ..||.+.++. .|++.| +||+|+ |+|...+. ......
T Consensus 3 ~~mkIl~v~~~~~p---------~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~-------~~~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFPP---------RIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNA-------EEAHAY 52 (394)
T ss_dssp -CCCEEEEESCCTT---------SCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSH-------HHHHHH
T ss_pred CCceEEEEeCccCC---------ccchHHHHHH--------HHHHHh--cCCeEE----EEECCCCc-------cchhhh
Confidence 46899999987654 5799999999 455566 699999 88874211 000122
Q ss_pred cCCCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCc-EEE
Q 002909 359 YDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGIT-QAT 437 (867)
Q Consensus 359 ~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip-~V~ 437 (867)
....++.+++++..... . .+ .+...+.+.+.+ .+||+||+|..........++++.++| +|+
T Consensus 53 ~~~~~~~~~~~~~~~~~-------~---~~----~~~~~l~~~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML-------P---TP----TTAHAMAEIIRE---REIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC-------S---CH----HHHHHHHHHHHH---TTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred ccccceEEEEccccccc-------c---ch----hhHHHHHHHHHh---cCCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 23446888888864321 1 11 223334444444 389999999876644445556778887 788
Q ss_pred EEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCC
Q 002909 438 IAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGIN 517 (867)
Q Consensus 438 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~ 517 (867)
+.|+..... .. . .......+..++.+|.|+++|+...+.+.+. .+ .
T Consensus 116 ~~h~~~~~~--------~~-~-----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~-~ 161 (394)
T 3okp_A 116 STHGHEVGW--------SM-L-----PGSRQSLRKIGTEVDVLTYISQYTLRRFKSA-------------------FG-S 161 (394)
T ss_dssp ECCSTHHHH--------TT-S-----HHHHHHHHHHHHHCSEEEESCHHHHHHHHHH-------------------HC-S
T ss_pred Eeccchhhh--------hh-c-----chhhHHHHHHHHhCCEEEEcCHHHHHHHHHh-------------------cC-C
Confidence 999754311 10 0 0011123346789999999998776632221 11 1
Q ss_pred CCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHH
Q 002909 518 VFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYG 597 (867)
Q Consensus 518 ~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~ 597 (867)
..++.+||||+|.+.|.|....... ..++.+|+ ++++++|+++||+.+.||++.+++|+.
T Consensus 162 --~~~~~vi~ngv~~~~~~~~~~~~~~----------------~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 162 --HPTFEHLPSGVDVKRFTPATPEDKS----------------ATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp --SSEEEECCCCBCTTTSCCCCHHHHH----------------HHHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred --CCCeEEecCCcCHHHcCCCCchhhH----------------HHHHhcCC--CcCceEEEEEeccccccCHHHHHHHHH
Confidence 5689999999999999884332211 11255677 677799999999999999999999999
Q ss_pred HhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCC
Q 002909 598 KNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALY 677 (867)
Q Consensus 598 ~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~ 677 (867)
.+.+..++++|+|+|+|+. .+.+++++ .++.++|.|+|+ ++.+++..+++. ||++|+||.+
T Consensus 222 ~l~~~~~~~~l~i~G~g~~------------~~~l~~~~--~~~~~~v~~~g~----~~~~~~~~~~~~-ad~~v~ps~~ 282 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY------------ESTLRRLA--TDVSQNVKFLGR----LEYQDMINTLAA-ADIFAMPART 282 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT------------HHHHHHHT--GGGGGGEEEEES----CCHHHHHHHHHH-CSEEEECCCC
T ss_pred HHHhhCCCeEEEEEcCchH------------HHHHHHHH--hcccCeEEEcCC----CCHHHHHHHHHh-CCEEEecCcc
Confidence 9988889999999999865 46666666 567789999995 556899999997 9999999999
Q ss_pred -------CCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 002909 678 -------EAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQ 750 (867)
Q Consensus 678 -------EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~ 750 (867)
|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++ .|++.+++|++++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~ 357 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRA 357 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred ccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHH----hCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999988 899999999999999
Q ss_pred HHHHhCCHHHHHHHHHHH
Q 002909 751 RIYECYTWKIYANKVLNM 768 (867)
Q Consensus 751 ~v~~~ysw~~~a~~ll~l 768 (867)
.+.++|||+.+++++.++
T Consensus 358 ~~~~~~s~~~~~~~~~~~ 375 (394)
T 3okp_A 358 HVEAEWSWEIMGERLTNI 375 (394)
T ss_dssp HHHHHTBHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 998999999999999994
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=6.5e-40 Score=378.62 Aligned_cols=423 Identities=14% Similarity=0.150 Sum_probs=279.1
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCC-------
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQ------- 353 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~------- 353 (867)
|||++|+.+.+|. +..||.++++. +|+++|+++||+|+ |+|...+..... ...
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~-~~~~~~~~~~ 60 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRG-VTDAQVVSRR 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHH-CTTCEEEEEE
T ss_pred CeEEEEeeecccc-------ccCCcHHHHHH--------HHHHHHHHcCCEEE----EEecCccccccc-cccceeEEEe
Confidence 7999999877651 13699999999 56667788999999 888642110000 000
Q ss_pred -----ccccc-cCCCCeEEEEccCCCc---cc-ccc-----cccccccchhhHHHHHHHHHHHHHHHcC--CCCeEEEEC
Q 002909 354 -----ELEPI-YDTKHSHILRIPFKTE---QA-ILP-----QWVSRFDIYPYLGRFAQDATAKILDLME--GKPDLIIGN 416 (867)
Q Consensus 354 -----~~e~i-~~~~~v~I~rvp~~~~---~~-~l~-----~~isr~~i~p~l~~f~~~~~~~i~~~l~--~kPDIIh~h 416 (867)
..+.. ...+++.+++++.... .+ ... .|.. .+..+..|...+.+ +.+.+. .+|||||+|
T Consensus 61 ~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~Divh~~ 136 (485)
T 2qzs_A 61 DTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTD---NVLRFALLGWVGAE-MASGLDPFWRPDVVHAH 136 (485)
T ss_dssp CCTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCTT---HHHHHHHHHHHHHH-HTTTSSTTCCCSEEEEE
T ss_pred cccCCcEEEEEEEECCcEEEEEeChhhccCCCCccCCcccCCCCc---hHHHHHHHHHHHHH-HHHHhccCCCCCEEEee
Confidence 00000 0024677777763210 00 000 0000 00011112222222 222221 589999999
Q ss_pred CCChHHHHHHHH-HhcCCcEEEEEcCCcccccccch-h-----hhhhcCc-cccchhhhhHHHHHHhcCCEEEecCHHHH
Q 002909 417 YSDGNLVASLMA-SKLGITQATIAHALEKSKYEDSD-A-----KWKELDP-KYHFSCQFTADLIAMNQTDFIITSTYQEI 488 (867)
Q Consensus 417 ~~~~~l~a~lla-~~~gip~V~t~H~l~~~~~~~s~-~-----~~~~~~~-~y~f~~~~~~e~ial~~aD~IIa~S~~~~ 488 (867)
.+..++++.+++ +..++|+|++.|+.......... . .+..+.. ...+......++..++.+|.||++|+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 216 (485)
T 2qzs_A 137 DWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYA 216 (485)
T ss_dssp TGGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHH
T ss_pred ccchhHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHH
Confidence 877766777776 67899999999997543211100 0 0000000 00011111234567899999999999877
Q ss_pred hhcCCCCCccccccccccccceeeeccCCC------CC--CcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhccc
Q 002909 489 AGSKDRPGQYESHTAFTMPGLCRVVSGINV------FD--PKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKE 560 (867)
Q Consensus 489 ~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~------~~--~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~ 560 (867)
+.+.+. ..|+++ .. .++.+||||+|.+.|.|..............+....-++.
T Consensus 217 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (485)
T 2qzs_A 217 REITEP------------------QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKR 278 (485)
T ss_dssp HHTTSH------------------HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHH
T ss_pred HHHhcc------------------ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHH
Confidence 633221 001110 02 6899999999999887754210000000000000000111
Q ss_pred ccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcC
Q 002909 561 DNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQ 640 (867)
Q Consensus 561 ~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~ 640 (867)
..++.+|+..++++++|+++||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+.+++++++++
T Consensus 279 ~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~ 346 (485)
T 2qzs_A 279 QLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP----------VLQEGFLAAAAEYP 346 (485)
T ss_dssp HHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH----------HHHHHHHHHHHHST
T ss_pred HHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCch----------HHHHHHHHHHHhCC
Confidence 22356777322378999999999999999999999999976 4899999999853 35677888888875
Q ss_pred CCCcEE-EcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecC---------c
Q 002909 641 LQGQFR-WIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDG---------V 710 (867)
Q Consensus 641 L~~~V~-flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg---------~ 710 (867)
++|. |.|+ +.+++..+|+. ||+||+||.+|+||++++|||+||+|||+|+.||..|++.++ .
T Consensus 347 --~~v~~~~g~-----~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~ 418 (485)
T 2qzs_A 347 --GQVGVQIGY-----HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVA 418 (485)
T ss_dssp --TTEEEEESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCC
T ss_pred --CcEEEeCCC-----CHHHHHHHHHh-CCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCcccccccccc
Confidence 7886 8884 34577888887 999999999999999999999999999999999999999998 8
Q ss_pred eEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 711 SGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 711 ~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
+|++++++|+++++++|.++++ +..|++.+++|++++++ ++|||+.++++++++|
T Consensus 419 ~G~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly 473 (485)
T 2qzs_A 419 SGFVFEDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELY 473 (485)
T ss_dssp CBEEECSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHH
T ss_pred ceEEECCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHH
Confidence 9999999999999999988873 22589999999999974 7999999999999954
No 8
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=3.6e-39 Score=362.20 Aligned_cols=356 Identities=18% Similarity=0.270 Sum_probs=261.9
Q ss_pred CCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCccccccCCCCeEEEEccCCCccccccc
Q 002909 301 PDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPIYDTKHSHILRIPFKTEQAILPQ 380 (867)
Q Consensus 301 pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i~~~~~v~I~rvp~~~~~~~l~~ 380 (867)
|..||.+.++. +|++.|+++||+|+ |+|...+. ... ...+++.+..++......
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~--------~~~--~~~~~i~~~~~~~~~~~~---- 77 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPF--------RLN--KVYPNIYFHEVTVNQYSV---- 77 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHhCCCEEE----EEeCCCCC--------ccc--ccCCceEEEecccccccc----
Confidence 35799999999 56667788999999 99874221 000 112356666665432110
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHH-HHHHHHHhc--CCcEEEEEcCCcccccccchhhhhhc
Q 002909 381 WVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNL-VASLMASKL--GITQATIAHALEKSKYEDSDAKWKEL 457 (867)
Q Consensus 381 ~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l-~a~lla~~~--gip~V~t~H~l~~~~~~~s~~~~~~~ 457 (867)
+...++...+...+.+.+.+. +|||||+|+..... .+.+.++.. ++|+|++.|+........
T Consensus 78 ----~~~~~~~~~~~~~l~~~l~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~-------- 142 (394)
T 2jjm_A 78 ----FQYPPYDLALASKMAEVAQRE---NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS-------- 142 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHH---TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTT--------
T ss_pred ----cccccccHHHHHHHHHHHHHc---CCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCC--------
Confidence 111112223334445555544 89999999765543 344444444 599999999843211100
Q ss_pred CccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCC
Q 002909 458 DPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFP 537 (867)
Q Consensus 458 ~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p 537 (867)
...+ .......++.+|.|+++|+...+.+.+.. + . ..++.+||||+|.+.|.+
T Consensus 143 ~~~~-----~~~~~~~~~~ad~ii~~s~~~~~~~~~~~-------------------~-~--~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 143 DPSL-----NNLIRFGIEQSDVVTAVSHSLINETHELV-------------------K-P--NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp CTTT-----HHHHHHHHHHSSEEEESCHHHHHHHHHHT-------------------C-C--SSCEEECCCCCCTTTCCC
T ss_pred CHHH-----HHHHHHHHhhCCEEEECCHHHHHHHHHhh-------------------C-C--cccEEEecCCccHHhcCC
Confidence 0001 11234478899999999987766332210 1 1 468999999999998877
Q ss_pred CchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 002909 538 YTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDP 617 (867)
Q Consensus 538 ~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~ 617 (867)
......+ +.+|+ ++++++|+++||+.+.||++.+++|+..+.+. ++++|+|+|+|+.
T Consensus 196 ~~~~~~~-------------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQLK-------------------KEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHHHH-------------------HHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred cchHHHH-------------------HHcCC--CCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEECCchH-
Confidence 5332221 34555 56788999999999999999999999999875 5799999999865
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec
Q 002909 618 SKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT 697 (867)
Q Consensus 618 ~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat 697 (867)
.+.++++++++++.++|.|+|+. +++..+|+. ||++|+||.+|+||++++|||+||+|||+|
T Consensus 253 -----------~~~l~~~~~~~~l~~~v~~~g~~------~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 253 -----------FCTILQLVKNLHIEDRVLFLGKQ------DNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp -----------HHHHHHHHHTTTCGGGBCCCBSC------SCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHHcCCCCeEEEeCch------hhHHHHHHh-CCEEEeccccCCCchHHHHHHhcCCCEEEe
Confidence 57788999999999999999963 346777776 999999999999999999999999999999
Q ss_pred CCCCccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 698 NQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 698 ~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
+.||..|++.++.+|++++++|+++++++|.+++ .|++.+++|++++++++.++|||+.++++++++|
T Consensus 315 ~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 382 (394)
T 2jjm_A 315 RVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEKIVSQYETIY 382 (394)
T ss_dssp CCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988 7999999999999999999999999999999954
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=5.3e-40 Score=379.39 Aligned_cols=428 Identities=16% Similarity=0.140 Sum_probs=279.1
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCC-------
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQ------- 353 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~------- 353 (867)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+.... ....
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~ 60 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKA-AVTDPVKCFEF 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHH-HCCSCEEEEEE
T ss_pred CeEEEEeeeeccc-------cccccHHHHHH--------HHHHHHHHcCCeEE----EEecccccccc-cccccceeEEE
Confidence 7999999877651 13699999999 56667888999999 88864221000 0000
Q ss_pred ------ccccc-cCCCCeEEEEccCCCccccccc--cccc--ccch-h---hHHHHHHHHHHHHHHHc--CCCCeEEEEC
Q 002909 354 ------ELEPI-YDTKHSHILRIPFKTEQAILPQ--WVSR--FDIY-P---YLGRFAQDATAKILDLM--EGKPDLIIGN 416 (867)
Q Consensus 354 ------~~e~i-~~~~~v~I~rvp~~~~~~~l~~--~isr--~~i~-p---~l~~f~~~~~~~i~~~l--~~kPDIIh~h 416 (867)
..... ...+++.+++++...... +. .... ..-| . .+..|...+.+ +.+.+ ..+|||||+|
T Consensus 61 ~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DiIh~~ 137 (485)
T 1rzu_A 61 TDLLGEKADLLEVQHERLDLLILDAPAYYE--RSGGPYLGQTGKDYPDNWKRFAALSLAAAR-IGAGVLPGWRPDMVHAH 137 (485)
T ss_dssp SCSSSCCEEEEEEEETTEEEEEEECHHHHC--SSSCSSBCTTSSBCTTHHHHHHHHHHHHHH-HHTTCSSSCCCSEEEEE
T ss_pred EEecCCeEEEEEEEecCceEEEEeChHHhC--CCccccCCcccccccchHHHHHHHHHHHHH-HHHHhccCCCCCEEEec
Confidence 00000 012467788776421000 00 0000 0001 0 11122222333 33322 4689999999
Q ss_pred CCChHHHHHHHHHh--cCCcEEEEEcCCcccccccc-hh-----hhhhcC-ccccchhhhhHHHHHHhcCCEEEecCHHH
Q 002909 417 YSDGNLVASLMASK--LGITQATIAHALEKSKYEDS-DA-----KWKELD-PKYHFSCQFTADLIAMNQTDFIITSTYQE 487 (867)
Q Consensus 417 ~~~~~l~a~lla~~--~gip~V~t~H~l~~~~~~~s-~~-----~~~~~~-~~y~f~~~~~~e~ial~~aD~IIa~S~~~ 487 (867)
.+..++++.++++. .++|+|++.|+......... .. .+..+. ....+......++.+++.+|.||++|+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 217 (485)
T 1rzu_A 138 DWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSY 217 (485)
T ss_dssp HHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHH
T ss_pred ccchhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhH
Confidence 86666667777665 89999999999754321110 00 000000 00001111123456789999999999987
Q ss_pred HhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccc
Q 002909 488 IAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIG 567 (867)
Q Consensus 488 ~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lG 567 (867)
.+.+.+. | .++.++.+ .+++ ..++.+||||+|.+.|.|....................++...++.+|
T Consensus 218 ~~~~~~~---~---~g~~~~~~----~~~~--~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 285 (485)
T 1rzu_A 218 AEEILTA---E---FGMGLEGV----IGSR--AHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285 (485)
T ss_dssp HHHTTSH---H---HHTTCHHH----HHTT--GGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT
T ss_pred HHHHhcc---c---cCcchHHH----HHhh--cCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcC
Confidence 7633221 0 00000000 0012 568999999999998877542100000000000000001112235567
Q ss_pred cccCCC-CcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEE
Q 002909 568 YLADRK-KPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFR 646 (867)
Q Consensus 568 ll~~~~-k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~ 646 (867)
+ +++ +++|+++||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+.+++++++++ ++|.
T Consensus 286 ~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v~ 349 (485)
T 1rzu_A 286 I--DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV----------ALEGALLAAASRHH--GRVG 349 (485)
T ss_dssp C--CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH----------HHHHHHHHHHHHTT--TTEE
T ss_pred C--CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCch----------HHHHHHHHHHHhCC--CcEE
Confidence 6 443 6799999999999999999999999976 4899999999853 35677888888875 7887
Q ss_pred -EcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecC---------ceEEEeC
Q 002909 647 -WIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDG---------VSGFHID 716 (867)
Q Consensus 647 -flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg---------~~G~lv~ 716 (867)
|.|+ +.+++..+|+. ||+||+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|++++
T Consensus 350 ~~~g~-----~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~ 423 (485)
T 1rzu_A 350 VAIGY-----NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFS 423 (485)
T ss_dssp EEESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEES
T ss_pred EecCC-----CHHHHHHHHhc-CCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeC
Confidence 7885 34567788887 999999999999999999999999999999999999999998 8999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 717 PNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 717 p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
++|+++++++|.+++. +..|++.+++|++++++ ++|||+.++++++++|
T Consensus 424 ~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y 472 (485)
T 1rzu_A 424 PVTLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALY 472 (485)
T ss_dssp SCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH---HhCChHHHHHHHHHHH
Confidence 9999999999988863 22589999999999974 7999999999999954
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=7.3e-40 Score=363.27 Aligned_cols=365 Identities=16% Similarity=0.196 Sum_probs=260.8
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCccccccC
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPIYD 360 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i~~ 360 (867)
|||++++.+..| .||.++++. +|++.|+++||+|+ |+|..... ..
T Consensus 1 MkIl~i~~~~~~----------~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~--------~~----- 45 (374)
T 2iw1_A 1 MIVAFCLYKYFP----------FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEG--------DC----- 45 (374)
T ss_dssp -CEEEECSEECT----------TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECS--------CC-----
T ss_pred CeEEEEEeecCC----------CcchhhHHH--------HHHHHHHhCCCeEE----EEecCCCC--------CC-----
Confidence 799999976543 699999999 56667888999999 88874211 00
Q ss_pred CCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCcEEEEEc
Q 002909 361 TKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGITQATIAH 440 (867)
Q Consensus 361 ~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~V~t~H 440 (867)
.+++.+.++|...... ......+...+.+.+.+ .+||+||+|.+..++.+...++..+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLKE---HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHHH---SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCcEEEEEccCcccc-----------hhhHHHHHHHHHHHHhc---cCCCEEEEecCCCCceeeeccccccceeeeecc
Confidence 1267788887653210 11122333344444443 489999999754432111111111222222223
Q ss_pred CCcccccccchhhhhhcCccccchhhhhHHHHHHh--cCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCC
Q 002909 441 ALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMN--QTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINV 518 (867)
Q Consensus 441 ~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~--~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~ 518 (867)
+... .....+.+.. ..+...+. .+|.|+++|+...+.+.+ ..|++
T Consensus 112 ~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~-------------------~~~~~- 158 (374)
T 2iw1_A 112 GFLY-----------RLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQK-------------------HYQTE- 158 (374)
T ss_dssp CHHH-----------HTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHH-------------------HHCCC-
T ss_pred cchh-----------hhcHHHHHHH--HHHHHHhhccCCcEEEEcCHHHHHHHHH-------------------HhCCC-
Confidence 2110 0111111111 12233333 799999999877653221 12333
Q ss_pred CCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHH
Q 002909 519 FDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGK 598 (867)
Q Consensus 519 ~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~ 598 (867)
..++.+||||+|.+.|.+......+ ...++.+|+ ++++++|+++||+.+.||++.+++|+..
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSR---------------EIYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHH---------------HHHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -hhheEEecCCcCHHhcCcccchhHH---------------HHHHHHhCC--CCCCeEEEEeccchhhcCHHHHHHHHHH
Confidence 5689999999999887664321110 011245676 6778999999999999999999999998
Q ss_pred hHcc-CCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCC
Q 002909 599 NKRL-RNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALY 677 (867)
Q Consensus 599 l~~~-~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~ 677 (867)
+.+. .++++|+|+|+++. +.++++++++++.++|+|+|+. +++..+++. ||++|+||.+
T Consensus 221 l~~~~~~~~~l~i~G~g~~-------------~~~~~~~~~~~~~~~v~~~g~~------~~~~~~~~~-ad~~v~ps~~ 280 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP-------------RKFEALAEKLGVRSNVHFFSGR------NDVSELMAA-ADLLLHPAYQ 280 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC-------------HHHHHHHHHHTCGGGEEEESCC------SCHHHHHHH-CSEEEECCSC
T ss_pred hHhccCCceEEEEEcCCCH-------------HHHHHHHHHcCCCCcEEECCCc------ccHHHHHHh-cCEEEecccc
Confidence 8765 56899999999864 5678889999999999999963 357777776 9999999999
Q ss_pred CCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeC-CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC
Q 002909 678 EAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHID-PNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECY 756 (867)
Q Consensus 678 EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~-p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~y 756 (867)
|+||++++|||+||+|||+|+.||..|++.++.+|++++ ++|+++++++|.+++ +|++.+++|++++++.+ ++|
T Consensus 281 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~-~~~ 355 (374)
T 2iw1_A 281 EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYA-DTQ 355 (374)
T ss_dssp CSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HHS
T ss_pred CCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHH----cChHHHHHHHHHHHHHH-HHh
Confidence 999999999999999999999999999999999999998 899999999999988 79999999999999998 567
Q ss_pred CHHHHHHHHHHHHh
Q 002909 757 TWKIYANKVLNMGS 770 (867)
Q Consensus 757 sw~~~a~~ll~ly~ 770 (867)
+|...++++.++++
T Consensus 356 ~~~~~~~~~~~~l~ 369 (374)
T 2iw1_A 356 DLYSLPEKAADIIT 369 (374)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988654
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.9e-38 Score=355.83 Aligned_cols=360 Identities=14% Similarity=0.190 Sum_probs=261.2
Q ss_pred CCcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCcccc
Q 002909 278 PNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEP 357 (867)
Q Consensus 278 pm~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~ 357 (867)
.++|||++++++..+ ..||.+.++. .|++.|.++||+|+ +++....... . .....
T Consensus 18 ~~~MkIl~i~~~~~~---------~~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~---~-~~~~~ 72 (406)
T 2gek_A 18 GSHMRIGMVCPYSFD---------VPGGVQSHVL--------QLAEVLRDAGHEVS----VLAPASPHVK---L-PDYVV 72 (406)
T ss_dssp ---CEEEEECSSCTT---------SCCHHHHHHH--------HHHHHHHHTTCEEE----EEESCCTTSC---C-CTTEE
T ss_pred CCcceEEEEeccCCC---------CCCcHHHHHH--------HHHHHHHHCCCeEE----EEecCCcccc---C-Ccccc
Confidence 346899999964432 4599999999 56667888999999 8887532210 0 01111
Q ss_pred ccCCCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCcEEE
Q 002909 358 IYDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGITQAT 437 (867)
Q Consensus 358 i~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~V~ 437 (867)
. .+ .++++|+... ..+.... ..+...+.+.+.+. +||+||+|.......+.++++..++|+|+
T Consensus 73 ~---~~-~~~~~~~~~~-------~~~~~~~---~~~~~~l~~~l~~~---~~Dii~~~~~~~~~~~~~~~~~~~~~~i~ 135 (406)
T 2gek_A 73 S---GG-KAVPIPYNGS-------VARLRFG---PATHRKVKKWIAEG---DFDVLHIHEPNAPSLSMLALQAAEGPIVA 135 (406)
T ss_dssp E---CC-CCC-------------------CC---HHHHHHHHHHHHHH---CCSEEEEECCCSSSHHHHHHHHEESSEEE
T ss_pred c---CC-cEEeccccCC-------ccccccc---HHHHHHHHHHHHhc---CCCEEEECCccchHHHHHHHHhcCCCEEE
Confidence 1 11 3444443221 0111111 11223344444443 89999999876655566777788999999
Q ss_pred EEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCC
Q 002909 438 IAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGIN 517 (867)
Q Consensus 438 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~ 517 (867)
+.|+...... .+..+ +.+. + ..++.+|.|+++|+...+.+.+ +++
T Consensus 136 ~~h~~~~~~~-----~~~~~---~~~~-----~-~~~~~~d~ii~~s~~~~~~~~~---------------------~~~ 180 (406)
T 2gek_A 136 TFHTSTTKSL-----TLSVF---QGIL-----R-PYHEKIIGRIAVSDLARRWQME---------------------ALG 180 (406)
T ss_dssp EECCCCCSHH-----HHHHH---HSTT-----H-HHHTTCSEEEESSHHHHHHHHH---------------------HHS
T ss_pred EEcCcchhhh-----hHHHH---HHHH-----H-HHHhhCCEEEECCHHHHHHHHH---------------------hcC
Confidence 9998543321 11111 0111 1 4679999999999877652221 112
Q ss_pred CCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEecc-CCcCChHHHHHHH
Q 002909 518 VFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARL-DTVKNITGLTEWY 596 (867)
Q Consensus 518 ~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL-~~~Kgid~LieA~ 596 (867)
.+++ +||||+|.+.|.+.... .++ .+++++|+++||+ .+.||++.+++|+
T Consensus 181 --~~~~-vi~~~v~~~~~~~~~~~------------------------~~~--~~~~~~i~~~G~~~~~~Kg~~~li~a~ 231 (406)
T 2gek_A 181 --SDAV-EIPNGVDVASFADAPLL------------------------DGY--PREGRTVLFLGRYDEPRKGMAVLLAAL 231 (406)
T ss_dssp --SCEE-ECCCCBCHHHHHTCCCC------------------------TTC--SCSSCEEEEESCTTSGGGCHHHHHHHH
T ss_pred --CCcE-EecCCCChhhcCCCchh------------------------hhc--cCCCeEEEEEeeeCccccCHHHHHHHH
Confidence 4578 99999997665443211 111 3356899999999 9999999999999
Q ss_pred HHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCC
Q 002909 597 GKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL 676 (867)
Q Consensus 597 ~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~ 676 (867)
..+.+..++++|+|+|+++. +.++++++++ .++|.|+|+ ++..++..+|+. +|++|+||.
T Consensus 232 ~~l~~~~~~~~l~i~G~~~~-------------~~l~~~~~~~--~~~v~~~g~----~~~~~~~~~~~~-adv~v~ps~ 291 (406)
T 2gek_A 232 PKLVARFPDVEILIVGRGDE-------------DELREQAGDL--AGHLRFLGQ----VDDATKASAMRS-ADVYCAPHL 291 (406)
T ss_dssp HHHHTTSTTCEEEEESCSCH-------------HHHHHHTGGG--GGGEEECCS----CCHHHHHHHHHH-SSEEEECCC
T ss_pred HHHHHHCCCeEEEEEcCCcH-------------HHHHHHHHhc--cCcEEEEec----CCHHHHHHHHHH-CCEEEecCC
Confidence 99998888999999999842 5667777766 689999995 556789999997 999999996
Q ss_pred -CCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 002909 677 -YEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYEC 755 (867)
Q Consensus 677 -~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ 755 (867)
.|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ +|++.+.++++++++.+. +
T Consensus 292 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~ 366 (406)
T 2gek_A 292 GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGIL----EDDQLRAGYVARASERVH-R 366 (406)
T ss_dssp SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHH-h
Confidence 9999999999999999999999999999999999999999999999999999988 799999999999999997 9
Q ss_pred CCHHHHHHHHHHH
Q 002909 756 YTWKIYANKVLNM 768 (867)
Q Consensus 756 ysw~~~a~~ll~l 768 (867)
|||+.+++++.++
T Consensus 367 ~s~~~~~~~~~~~ 379 (406)
T 2gek_A 367 YDWSVVSAQIMRV 379 (406)
T ss_dssp GBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999994
No 12
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=2.8e-38 Score=357.53 Aligned_cols=285 Identities=19% Similarity=0.198 Sum_probs=222.6
Q ss_pred CCCeEEEECCCChHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEE-ecCHH
Q 002909 408 GKPDLIIGNYSDGNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFII-TSTYQ 486 (867)
Q Consensus 408 ~kPDIIh~h~~~~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~II-a~S~~ 486 (867)
.+|||||+|.+.....+.+++ .++|+|++.|+..... ....|. + -...+..+|.++ ++|..
T Consensus 125 ~~~Dvv~~~~~~~~~~~~~~~--~~~p~v~~~h~~~~~~---~~~~~~-------~------~~~~~~~~~~~i~~~s~~ 186 (416)
T 2x6q_A 125 SSFDYVLVHDPQPAALIEFYE--KKSPWLWRCHIDLSSP---NREFWE-------F------LRRFVEKYDRYIFHLPEY 186 (416)
T ss_dssp GGSSEEEEESSTTGGGGGGSC--CCSCEEEECCSCCSSC---CHHHHH-------H------HHHHHTTSSEEEESSGGG
T ss_pred cCCCEEEEeccchhhHHHHHH--hcCCEEEEEccccCCc---cHHHHH-------H------HHHHHHhCCEEEEechHH
Confidence 489999999876544443333 2389999999854321 111111 1 112456777776 55532
Q ss_pred HHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCc--hHhhhhccCCcchHHhhhccccccc
Q 002909 487 EIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYT--EKQKRLTSFHPDIEELLYSKEDNSE 564 (867)
Q Consensus 487 ~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~--~~~~r~~~~~~~i~~~l~~~~~~~~ 564 (867)
.. + +++ ..++.+||||+|...+.+.. .... ...++
T Consensus 187 ~~----~---------------------~~~--~~~~~vi~ngvd~~~~~~~~~~~~~~----------------~~~r~ 223 (416)
T 2x6q_A 187 VQ----P---------------------ELD--RNKAVIMPPSIDPLSEKNVELKQTEI----------------LRILE 223 (416)
T ss_dssp SC----T---------------------TSC--TTTEEECCCCBCTTSTTTSCCCHHHH----------------HHHHH
T ss_pred HH----h---------------------hCC--ccceEEeCCCCChhhhcccccChhhH----------------HHHHH
Confidence 11 1 111 46899999999987765422 1110 01124
Q ss_pred ccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCc
Q 002909 565 HIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQ 644 (867)
Q Consensus 565 ~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~ 644 (867)
.+|+ ++++++|+++||+.+.||++.+++|+..+.+..++++|+|+|+|+. .++ .+.+.++++++++++.++
T Consensus 224 ~~~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~---~~~~~l~~~~~~~~~~~~ 294 (416)
T 2x6q_A 224 RFDV--DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAH----DDP---EGWIYFEKTLRKIGEDYD 294 (416)
T ss_dssp HTTC--CTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCT----TCH---HHHHHHHHHHHHHTTCTT
T ss_pred HhCC--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcc----cch---hHHHHHHHHHHHhCCCCc
Confidence 5676 6788999999999999999999999999988888999999999964 111 234567888999999999
Q ss_pred EEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHH
Q 002909 645 FRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESS 724 (867)
Q Consensus 645 V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA 724 (867)
|+|+|+..+ .+.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+++++
T Consensus 295 V~~~G~~~~-~~~~~~~~~~~~-ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la 370 (416)
T 2x6q_A 295 VKVLTNLIG-VHAREVNAFQRA-SDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAV 370 (416)
T ss_dssp EEEEEGGGT-CCHHHHHHHHHH-CSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHH
T ss_pred EEEecccCC-CCHHHHHHHHHh-CCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHH
Confidence 999997653 456789999997 9999999999999999999999999999999999999999999999997 999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002909 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGS 770 (867)
Q Consensus 725 ~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly~ 770 (867)
++|.+++ +|++.+++|++++++++.++|||+.+++++.++|+
T Consensus 371 ~~i~~ll----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 412 (416)
T 2x6q_A 371 EVVLYLL----KHPEVSKEMGAKAKERVRKNFIITKHMERYLDILN 412 (416)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHH----hCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9999988 89999999999999999889999999999999764
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1e-36 Score=344.07 Aligned_cols=357 Identities=12% Similarity=0.086 Sum_probs=259.3
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCccccccC
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPIYD 360 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i~~ 360 (867)
|||++++++. | ..||.+.++. +|+++|+++ |+|+ |++.... |....
T Consensus 1 MkI~~v~~~~-p---------~~gG~~~~~~--------~l~~~L~~~-~~V~----v~~~~~~---g~~~~-------- 46 (413)
T 3oy2_A 1 MKLIIVGAHS-S---------VPSGYGRVMR--------AIVPRISKA-HEVI----VFGIHAF---GRSVH-------- 46 (413)
T ss_dssp CEEEEEEECT-T---------CCSHHHHHHH--------HHHHHHTTT-SEEE----EEEESCC---SCCSC--------
T ss_pred CeEEEecCCC-C---------CCCCHHHHHH--------HHHHHHHhc-CCeE----EEeecCC---Ccccc--------
Confidence 8999999753 3 4699999998 566688889 9999 8876321 11000
Q ss_pred CCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCc----EE
Q 002909 361 TKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGIT----QA 436 (867)
Q Consensus 361 ~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip----~V 436 (867)
............ .+ ++++... +.+ ..+.+.+.+. +||+||+|++ ....+.+++...++| .+
T Consensus 47 -~~~~~~~~~~~~---~~-~~~~~~~-~~~-----~~l~~~l~~~---~~Div~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (413)
T 3oy2_A 47 -ANIEEFDAQTAE---HV-RGLNEQG-FYY-----SGLSEFIDVH---KPDIVMIYND-PIVIGNYLLAMGKCSHRTKIV 111 (413)
T ss_dssp -SSSEEEEHHHHH---HH-TTCCSTT-CCH-----HHHHHHHHHH---CCSEEEEEEC-HHHHHHHHHHGGGCCSCCEEE
T ss_pred -cccccCCccccc---cc-ccccccc-chH-----HHHHHHHHhc---CCCEEEEcch-HHHHHHHHHHhccCCCCCcee
Confidence 011111111000 00 0111000 111 1223344443 8999999954 445666667776665 34
Q ss_pred EEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCC--EEEecCHHHHhhcCCCCCccccccccccccceeeec
Q 002909 437 TIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTD--FIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVS 514 (867)
Q Consensus 437 ~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD--~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~ 514 (867)
...|....... .. . ...++.+| .||++|+...+.+.+ .
T Consensus 112 ~~~~~~~~~~~--------~~------~------~~~~~~~~~~~ii~~S~~~~~~~~~--------------------~ 151 (413)
T 3oy2_A 112 LYVDLVSKNIR--------EN------L------WWIFSHPKVVGVMAMSKCWISDICN--------------------Y 151 (413)
T ss_dssp EEECCCSBSCC--------GG------G------GGGGGCTTEEEEEESSTHHHHHHHH--------------------T
T ss_pred eeccccchhhH--------HH------H------HHHHhccCCceEEEcCHHHHHHHHH--------------------c
Confidence 44554222110 00 0 11467888 999999877663322 1
Q ss_pred cCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHH
Q 002909 515 GINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTE 594 (867)
Q Consensus 515 GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~Lie 594 (867)
|+ ..++.+||||+|.+.|.. .. +.+|+....++++|+++||+.+.||++.+++
T Consensus 152 ~~---~~~~~vi~ngvd~~~~~~---~~---------------------~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 152 GC---KVPINIVSHFVDTKTIYD---AR---------------------KLVGLSEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp TC---CSCEEECCCCCCCCCCTT---HH---------------------HHTTCGGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred CC---CCceEEeCCCCCHHHHHH---HH---------------------HhcCCCcccCceEEEEcCCCchhcCcHHHHH
Confidence 22 468999999999987711 11 3345522237899999999999999999999
Q ss_pred HHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCc-------EEEcccccCCCChHHHHHHHHcc
Q 002909 595 WYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQ-------FRWIAAQTDRYRNGELYRCIADT 667 (867)
Q Consensus 595 A~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~-------V~flG~~~d~v~~~el~~~la~~ 667 (867)
|+..+.+..++++|+|+|+|+.... ....+.++++++++++.++ |.|.|+ ++.+++..+|+.
T Consensus 205 a~~~l~~~~~~~~l~ivG~g~~~~~------~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~----~~~~~~~~~~~~- 273 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCNSHHESK------FDLHSIALRELVASGVDNVFTHLNKIMINRTV----LTDERVDMMYNA- 273 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEECCTTCS------CCHHHHHHHHHHHHTCSCHHHHHTTEEEECSC----CCHHHHHHHHHH-
T ss_pred HHHHHHHhCCCcEEEEEeCCcccch------hhHHHHHHHHHHHcCcccccccccceeeccCc----CCHHHHHHHHHh-
Confidence 9999988889999999999975110 0133678889999999887 888894 556899999997
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecCce---------------EE--EeCCCCHHHHHHHHHHH
Q 002909 668 KGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVS---------------GF--HIDPNNGDESSNKIADF 730 (867)
Q Consensus 668 aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~---------------G~--lv~p~d~e~lA~aI~~l 730 (867)
||++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+ |+ +++++|+++++++| ++
T Consensus 274 adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l 352 (413)
T 3oy2_A 274 CDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TF 352 (413)
T ss_dssp CSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HH
T ss_pred CCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HH
Confidence 99999999999999999999999999999999999999999887 99 99999999999999 99
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 731 FEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 731 l~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
+ .|++.+++|++++++++.++|||+.++++++++|
T Consensus 353 ~----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 387 (413)
T 3oy2_A 353 F----KDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFF 387 (413)
T ss_dssp T----TSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred h----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8 8999999999999999989999999999999943
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.9e-36 Score=332.02 Aligned_cols=310 Identities=15% Similarity=0.091 Sum_probs=240.2
Q ss_pred cceEEEEccC--------ccCCcccccCCC-CcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCC
Q 002909 280 MFNVVIFSPH--------GYFGQADVLGLP-DTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTK 350 (867)
Q Consensus 280 ~~rI~ivs~h--------g~p~~~~vlG~p-dtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~ 350 (867)
+|||++++.+ .+|. .| ..||.+.++. +|++.|.++||+|+ +++......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~------~p~~~gG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~---- 60 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISV------PPQGYGGIQWVVA--------NLMDGLLELGHEVF----LLGAPGSPA---- 60 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCS------SCSSSCHHHHHHH--------HHHHHHHHTTCEEE----EESCTTSCC----
T ss_pred ccEEEEEeccccccCccccccc------CcccCChHHHHHH--------HHHHHHHHcCCeEE----EEecCCCCC----
Confidence 3899999987 3221 12 3599999999 56667778999999 888742110
Q ss_pred CCCccccccCCCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHh
Q 002909 351 CSQELEPIYDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASK 430 (867)
Q Consensus 351 ~~~~~e~i~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~ 430 (867)
. .+++.+++.+ . +. .+.+.+.+ .+||+||+|.+.....+ ++.
T Consensus 61 -----~----~~~~~~~~~~--~--------------~~-------~l~~~l~~---~~~Dvi~~~~~~~~~~~---~~~ 102 (342)
T 2iuy_A 61 -----G----RPGLTVVPAG--E--------------PE-------EIERWLRT---ADVDVVHDHSGGVIGPA---GLP 102 (342)
T ss_dssp -----C----STTEEECSCC--S--------------HH-------HHHHHHHH---CCCSEEEECSSSSSCST---TCC
T ss_pred -----C----CCcceeccCC--c--------------HH-------HHHHHHHh---cCCCEEEECCchhhHHH---Hhh
Confidence 0 1234333211 0 10 23333333 38999999986654332 567
Q ss_pred cCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccce
Q 002909 431 LGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLC 510 (867)
Q Consensus 431 ~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~ 510 (867)
.++| |++.|+..... ..+|.|+++|+...+.+.+
T Consensus 103 ~~~p-v~~~h~~~~~~----------------------------~~~d~ii~~S~~~~~~~~~----------------- 136 (342)
T 2iuy_A 103 PGTA-FISSHHFTTRP----------------------------VNPVGCTYSSRAQRAHCGG----------------- 136 (342)
T ss_dssp TTCE-EEEEECSSSBC----------------------------SCCTTEEESCHHHHHHTTC-----------------
T ss_pred cCCC-EEEecCCCCCc----------------------------ccceEEEEcCHHHHHHHhc-----------------
Confidence 8999 99999865321 0189999999887763221
Q ss_pred eeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChH
Q 002909 511 RVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNIT 590 (867)
Q Consensus 511 ~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid 590 (867)
..++.+||||+|.+.|.+.... .+++++|+++||+.+.||++
T Consensus 137 ---------~~~~~vi~ngvd~~~~~~~~~~-----------------------------~~~~~~i~~vG~~~~~Kg~~ 178 (342)
T 2iuy_A 137 ---------GDDAPVIPIPVDPARYRSAADQ-----------------------------VAKEDFLLFMGRVSPHKGAL 178 (342)
T ss_dssp ---------CTTSCBCCCCBCGGGSCCSTTC-----------------------------CCCCSCEEEESCCCGGGTHH
T ss_pred ---------CCceEEEcCCCChhhcCccccc-----------------------------CCCCCEEEEEeccccccCHH
Confidence 3478899999998877664320 23556899999999999999
Q ss_pred HHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcE
Q 002909 591 GLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGA 670 (867)
Q Consensus 591 ~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDv 670 (867)
.+++|+..+ +++|+|+|+|+. .+.+++++++++ ++|+|+|+ ++..++..+|+. ||+
T Consensus 179 ~li~a~~~~-----~~~l~i~G~g~~------------~~~l~~~~~~~~--~~v~~~g~----~~~~~l~~~~~~-adv 234 (342)
T 2iuy_A 179 EAAAFAHAC-----GRRLVLAGPAWE------------PEYFDEITRRYG--STVEPIGE----VGGERRLDLLAS-AHA 234 (342)
T ss_dssp HHHHHHHHH-----TCCEEEESCCCC------------HHHHHHHHHHHT--TTEEECCC----CCHHHHHHHHHH-CSE
T ss_pred HHHHHHHhc-----CcEEEEEeCccc------------HHHHHHHHHHhC--CCEEEecc----CCHHHHHHHHHh-CCE
Confidence 999999987 689999999975 466777888877 89999995 556789999997 999
Q ss_pred EEEcCC----------CCCCCHHHHHHHHcCCCEEecCCCCccceeec--CceEEEeCCCCHHHHHHHHHHHHHHhhcCH
Q 002909 671 FVQPAL----------YEAFGLTVIEAMNCGLPTFATNQGGPAEIIID--GVSGFHIDPNNGDESSNKIADFFEKCKTDA 738 (867)
Q Consensus 671 fV~PS~----------~EgfGltvlEAMa~GlPVIat~~gG~~EiI~d--g~~G~lv~p~d~e~lA~aI~~ll~~~~~dp 738 (867)
+|+||. .|+||++++|||+||+|||+|+.||..|++.+ +.+|+++++ |+++++++|.+++ +
T Consensus 235 ~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~----~-- 307 (342)
T 2iuy_A 235 VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP----A-- 307 (342)
T ss_dssp EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC----C--
T ss_pred EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH----H--
Confidence 999999 89999999999999999999999999999999 999999999 9999999998876 3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002909 739 GYWNQMSAAGRQRIYECYTWKIYANKVLNMGS 770 (867)
Q Consensus 739 ~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly~ 770 (867)
++++++++.++|||+.+++++.++|+
T Consensus 308 ------~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (342)
T 2iuy_A 308 ------SDEVRRAAVRLWGHVTIAERYVEQYR 333 (342)
T ss_dssp ------HHHHHHHHHHHHBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67889999899999999999999543
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=2.4e-33 Score=319.46 Aligned_cols=346 Identities=10% Similarity=0.032 Sum_probs=225.2
Q ss_pred CCcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCcccc
Q 002909 278 PNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEP 357 (867)
Q Consensus 278 pm~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~ 357 (867)
+..|||++++++..|+. ..||.. .+. +|+++|+++||+|+ |+|+.... . ......
T Consensus 44 ~~~mrI~~v~~~~~p~~-------~~GG~~-~v~--------~la~~L~~~GheV~----Vvt~~~~~-~----~~~~~~ 98 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEH-------MFGGIS-TAL--------KLFEQFDNKKFKKR----IILTDATP-N----PKDLQS 98 (413)
T ss_dssp CCSCEEEEEESCCCGGG-------CSHHHH-HHH--------HHHTTSCTTTCEEE----EEESSCCC-C----HHHHGG
T ss_pred CCCceEEEEeCCCCccc-------cccHHH-HHH--------HHHHHHHHcCCceE----EEEecCCC-C----hHHHHh
Confidence 34699999999887621 247774 466 67778889999999 99985311 0 000111
Q ss_pred ccCCCCeEEEEccCCCcccccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHH----h---
Q 002909 358 IYDTKHSHILRIPFKTEQAILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMAS----K--- 430 (867)
Q Consensus 358 i~~~~~v~I~rvp~~~~~~~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~----~--- 430 (867)
+ .+.... ++.....+..+ + ..+.. . ...... ..+||+||++.+.+...+..+.+ .
T Consensus 99 ~---~~~~~~--~~~~~~~~~~~-i-----~~~~~----~-~~~~~~--~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
T 2x0d_A 99 F---KSFKYV--MPEEDKDFALQ-I-----VPFND----R-YNRTIP--VAKHDIFIATAWWTAYAAQRIVSWQSDTYGI 160 (413)
T ss_dssp G---TTSEEC--CTTCCCCCSEE-E-----EECSC----C-TTCCEE--ECTTEEEEECSHHHHHHHHHHHHHHHHHHTC
T ss_pred h---hcccee--eccCCccccce-e-----eeccc----c-cccccc--CCCCCEEEEehHHHHHHHHHhhhhhhhhccc
Confidence 1 111111 11111000000 0 00000 0 000000 13799999998766555544421 1
Q ss_pred cCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCC--EEEecCHHHHhhcCCCCCcccccccccccc
Q 002909 431 LGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTD--FIITSTYQEIAGSKDRPGQYESHTAFTMPG 508 (867)
Q Consensus 431 ~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD--~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~ 508 (867)
.+.+.++.+|+.++..+.... ........+..++ .+|++|....+.+++
T Consensus 161 ~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~--------------- 211 (413)
T 2x0d_A 161 PPNKILYIIQDFEPGFYQWSS--------------QYVLAESTYKYRGPQIAVFNSELLKQYFNN--------------- 211 (413)
T ss_dssp CCCCEEEEECSCGGGGSCSSH--------------HHHHHHHTTSCCSCEEEEEESHHHHHHHHH---------------
T ss_pred ccCcEEEEEeechhhcCccCh--------------HHHHHHHHhccCCceEEEEcCHHHHHHHHH---------------
Confidence 245778788876543221110 0011222445554 588999877663321
Q ss_pred ceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEecc-CCcC
Q 002909 509 LCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARL-DTVK 587 (867)
Q Consensus 509 l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL-~~~K 587 (867)
.|++ .+++.+++||+|.+.|.+.. .+ .++++.|+++||+ .+.|
T Consensus 212 -----~g~~--~~~~~~i~~g~d~~~~~~~~--------------------------~~---~~~~~~il~~gr~~~~~K 255 (413)
T 2x0d_A 212 -----KGYN--FTDEYFFQPKINTTLKNYIN--------------------------DK---RQKEKIILVYGRPSVKRN 255 (413)
T ss_dssp -----HTCC--CSEEEEECCCCCHHHHTTTT--------------------------SC---CCCCSEEEEEECTTCGGG
T ss_pred -----cCCC--CCceEEeCCCcCchhhcccc--------------------------cc---cCCCCEEEEEecCchhcc
Confidence 1333 35788999999976543310 00 2355678899996 6889
Q ss_pred ChHHHHHHHHHhHccCCC---eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHH
Q 002909 588 NITGLTEWYGKNKRLRNM---VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCI 664 (867)
Q Consensus 588 gid~LieA~~~l~~~~~~---v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~l 664 (867)
|++.+++|++.+.+..++ ++|+|+|+++.. .++++.++|+|+|+ ++.+++..+|
T Consensus 256 g~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-------------------~~l~~~~~v~f~G~----~~~~~l~~~~ 312 (413)
T 2x0d_A 256 AFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-------------------IALGKGIHLNSLGK----LTLEDYADLL 312 (413)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-------------------EEEETTEEEEEEES----CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-------------------hhcCCcCcEEEcCC----CCHHHHHHHH
Confidence 999999999999877665 899999998651 24567789999995 5568999999
Q ss_pred HccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHH
Q 002909 665 ADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQM 744 (867)
Q Consensus 665 a~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m 744 (867)
+. ||+||+||.+|+||++++||||||+|||++ .||..|++.++.+|++++|+|++++|++|.+++ +|++.+++
T Consensus 313 ~~-adv~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll----~~~~~~~~- 385 (413)
T 2x0d_A 313 KR-SSIGISLMISPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSLEQLNPENIAETLVELC----MSFNNRDV- 385 (413)
T ss_dssp HH-CCEEECCCSSSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHH----HHTC-----
T ss_pred Hh-CCEEEEecCCCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHH----cCHHHHHH-
Confidence 97 999999999999999999999999999995 567789999999999999999999999999988 67777666
Q ss_pred HHHHHHHHHHhCCHHHHHHH
Q 002909 745 SAAGRQRIYECYTWKIYANK 764 (867)
Q Consensus 745 ~~~ar~~v~~~ysw~~~a~~ 764 (867)
++++++ +.|||+..+++
T Consensus 386 --~~~~~~-~~~~W~~~~~~ 402 (413)
T 2x0d_A 386 --DKKESS-NMMFYINEFNE 402 (413)
T ss_dssp -----CCB-SCGGGCCCC--
T ss_pred --hHHHHH-HhCCHHHHHHH
Confidence 566665 68999998877
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=1.9e-30 Score=287.39 Aligned_cols=338 Identities=14% Similarity=0.045 Sum_probs=234.3
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCccccc
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPI 358 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i 358 (867)
|.|||++++. .+||.+..+. .|+++|.++||+|+ ++|.... . ....+
T Consensus 5 m~mkIl~~~~-------------~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~----~----~~~~~ 51 (364)
T 1f0k_A 5 QGKRLMVMAG-------------GTGGHVFPGL--------AVAHHLMAQGWQVR----WLGTADR----M----EADLV 51 (364)
T ss_dssp --CEEEEECC-------------SSHHHHHHHH--------HHHHHHHTTTCEEE----EEECTTS----T----HHHHG
T ss_pred CCcEEEEEeC-------------CCccchhHHH--------HHHHHHHHcCCEEE----EEecCCc----c----hhhhc
Confidence 3489999971 2588888887 56667888999999 8887311 0 00111
Q ss_pred cCCCCeEEEEccCCCcccc-cccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCcEEE
Q 002909 359 YDTKHSHILRIPFKTEQAI-LPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGITQAT 437 (867)
Q Consensus 359 ~~~~~v~I~rvp~~~~~~~-l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~V~ 437 (867)
...++.+..++.....+. ...++. ..+..+ .....+.+.+.+. +||+||+|....++.+.++++..++|+|+
T Consensus 52 -~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~p~v~ 124 (364)
T 1f0k_A 52 -PKHGIEIDFIRISGLRGKGIKALIA--APLRIF-NAWRQARAIMKAY---KPDVVLGMGGYVSGPGGLAAWSLGIPVVL 124 (364)
T ss_dssp -GGGTCEEEECCCCCCTTCCHHHHHT--CHHHHH-HHHHHHHHHHHHH---CCSEEEECSSTTHHHHHHHHHHTTCCEEE
T ss_pred -cccCCceEEecCCccCcCccHHHHH--HHHHHH-HHHHHHHHHHHhc---CCCEEEEeCCcCchHHHHHHHHcCCCEEE
Confidence 112566777765431110 000000 011111 1223344444443 89999999876666677788889999999
Q ss_pred EEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCC
Q 002909 438 IAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGIN 517 (867)
Q Consensus 438 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~ 517 (867)
+.|+..... ......+.+|.+++++...
T Consensus 125 ~~~~~~~~~----------------------~~~~~~~~~d~v~~~~~~~------------------------------ 152 (364)
T 1f0k_A 125 HEQNGIAGL----------------------TNKWLAKIATKVMQAFPGA------------------------------ 152 (364)
T ss_dssp EECSSSCCH----------------------HHHHHTTTCSEEEESSTTS------------------------------
T ss_pred EecCCCCcH----------------------HHHHHHHhCCEEEecChhh------------------------------
Confidence 999743110 0122456799999887320
Q ss_pred CCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCc-EEEEEeccCCcCChHHHHHHH
Q 002909 518 VFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKP-IIFSMARLDTVKNITGLTEWY 596 (867)
Q Consensus 518 ~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~-iIl~vGRL~~~Kgid~LieA~ 596 (867)
++ ++.+|+||+|.+.|.+.... +.+++ +++++ ++++.|++.+.||.+.+++|+
T Consensus 153 -~~-~~~~i~n~v~~~~~~~~~~~----------------------~~~~~--~~~~~~il~~~g~~~~~k~~~~li~a~ 206 (364)
T 1f0k_A 153 -FP-NAEVVGNPVRTDVLALPLPQ----------------------QRLAG--REGPVRVLVVGGSQGARILNQTMPQVA 206 (364)
T ss_dssp -SS-SCEECCCCCCHHHHTSCCHH----------------------HHHTT--CCSSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred -cC-CceEeCCccchhhcccchhh----------------------hhccc--CCCCcEEEEEcCchHhHHHHHHHHHHH
Confidence 02 56799999997665442211 22344 44555 455667999999999999999
Q ss_pred HHhHccCCCeE-EEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcC
Q 002909 597 GKNKRLRNMVN-LVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPA 675 (867)
Q Consensus 597 ~~l~~~~~~v~-LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS 675 (867)
..+.+ +++ ++++|+++ .+.++++++++++ ++|+|+|++. ++..+|+. ||++|+||
T Consensus 207 ~~l~~---~~~~l~i~G~~~-------------~~~l~~~~~~~~~-~~v~~~g~~~------~~~~~~~~-ad~~v~~s 262 (364)
T 1f0k_A 207 AKLGD---SVTIWHQSGKGS-------------QQSVEQAYAEAGQ-PQHKVTEFID------DMAAAYAW-ADVVVCRS 262 (364)
T ss_dssp HHHGG---GEEEEEECCTTC-------------HHHHHHHHHHTTC-TTSEEESCCS------CHHHHHHH-CSEEEECC
T ss_pred HHhcC---CcEEEEEcCCch-------------HHHHHHHHhhcCC-CceEEecchh------hHHHHHHh-CCEEEECC
Confidence 99865 688 56677764 2567788888887 4799999763 46777776 99999998
Q ss_pred CCCCCCHHHHHHHHcCCCEEecCCCCcc--------ceeecCceEEEeCCCC--HHHHHHHHHHHHHHhhcCHHHHHHHH
Q 002909 676 LYEAFGLTVIEAMNCGLPTFATNQGGPA--------EIIIDGVSGFHIDPNN--GDESSNKIADFFEKCKTDAGYWNQMS 745 (867)
Q Consensus 676 ~~EgfGltvlEAMa~GlPVIat~~gG~~--------EiI~dg~~G~lv~p~d--~e~lA~aI~~ll~~~~~dp~~~~~m~ 745 (867)
. |++++|||+||+|||+++.+|.. +++.+| .|++++++| +++++++|.+ + |++.+++|+
T Consensus 263 g----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~----l--~~~~~~~~~ 331 (364)
T 1f0k_A 263 G----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAG----W--SRETLLTMA 331 (364)
T ss_dssp C----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHT----C--CHHHHHHHH
T ss_pred c----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHh----c--CHHHHHHHH
Confidence 3 89999999999999999999864 455555 599999988 8999998844 3 899999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 002909 746 AAGRQRIYECYTWKIYANKVLNMGS 770 (867)
Q Consensus 746 ~~ar~~v~~~ysw~~~a~~ll~ly~ 770 (867)
+++++.+ +.|+|+.++++++++|+
T Consensus 332 ~~~~~~~-~~~~~~~~~~~~~~~y~ 355 (364)
T 1f0k_A 332 ERARAAS-IPDATERVANEVSRVAR 355 (364)
T ss_dssp HHHHHTC-CTTHHHHHHHHHHHHHT
T ss_pred HHHHHhh-ccCHHHHHHHHHHHHHH
Confidence 9999887 68999999999999654
No 17
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=3.7e-30 Score=301.09 Aligned_cols=334 Identities=15% Similarity=0.139 Sum_probs=221.6
Q ss_pred CCCeEEEECCCChHHHHHHHHH-hcCCcEEEEEcCCccccc----ccchhhhhh--cC-----ccccchhhhhHHHHHHh
Q 002909 408 GKPDLIIGNYSDGNLVASLMAS-KLGITQATIAHALEKSKY----EDSDAKWKE--LD-----PKYHFSCQFTADLIAMN 475 (867)
Q Consensus 408 ~kPDIIh~h~~~~~l~a~lla~-~~gip~V~t~H~l~~~~~----~~s~~~~~~--~~-----~~y~f~~~~~~e~ial~ 475 (867)
.+|||+|+|.|.+++++.++.+ ..++++|+|+|+....++ ...+.++.. +. ....+...+..++.+..
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 6799999999999988888875 458999999999864333 111222210 00 00112223445667888
Q ss_pred cCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHh
Q 002909 476 QTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEEL 555 (867)
Q Consensus 476 ~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~ 555 (867)
.||.|+|+|+..+..++..++ . .+.. +||||+|.+.|.|...........+..+.+.
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll~-------------------r---~~d~-iIpNGID~~~f~p~~~~~~~k~~aK~klq~~ 316 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLLK-------------------R---KPDG-ILPNGLNVIKFQAFHEFQNLHALKKEKINDF 316 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHTS-------------------S---CCSE-ECCCCBCCCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred hCCEEEECCHHHHHHHHHHhc-------------------C---CCCE-EEcCCccccccCcchhhHHHHHHHHHHHHHH
Confidence 999999999977665443211 1 2233 3999999999999632111100000111111
Q ss_pred hhcccccccccccccC-CCCcEEEEEeccC-CcCChHHHHHHHHHhHcc-------CCCeEEEEEeCCCCCCC-------
Q 002909 556 LYSKEDNSEHIGYLAD-RKKPIIFSMARLD-TVKNITGLTEWYGKNKRL-------RNMVNLVVVAGFFDPSK------- 619 (867)
Q Consensus 556 l~~~~~~~~~lGll~~-~~k~iIl~vGRL~-~~Kgid~LieA~~~l~~~-------~~~v~LvIVG~g~~~~~------- 619 (867)
+-+ .....+++ + +++++|+.+||++ +.||++.+++|+.++... ..-+.|+|+.++.....
T Consensus 317 l~~--~~~~~l~l--~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~ 392 (725)
T 3nb0_A 317 VRG--HFHGCFDF--DLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQ 392 (725)
T ss_dssp HHH--HTTTCCCS--CGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHH
T ss_pred HHh--hcccCCCC--CCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcch
Confidence 110 00011233 4 4556777789999 789999999999998742 23377888887744211
Q ss_pred ------------------------------------CC-ChHHH---H------------------------------HH
Q 002909 620 ------------------------------------SH-DREEI---A------------------------------EI 629 (867)
Q Consensus 620 ------------------------------------~~-d~ee~---~------------------------------~~ 629 (867)
.. |.++. + ..
T Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~ 472 (725)
T 3nb0_A 393 AEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDAN 472 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGG
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCc
Confidence 01 22211 0 11
Q ss_pred HHHHHHHHHcCCCCc------EEEcccccCCCC---hHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCC
Q 002909 630 KKMHTLIEKYQLQGQ------FRWIAAQTDRYR---NGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQG 700 (867)
Q Consensus 630 ~~l~~li~~~~L~~~------V~flG~~~d~v~---~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~g 700 (867)
+.+...++++++.++ |.|++...+..+ ..++..+|+. ||+||+||++|+||++++||||||+|||+|+.|
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~-advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRG-CHLGVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHH-CSEEECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhh-ceEEEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 223344566776655 566653222111 1246666665 999999999999999999999999999999999
Q ss_pred CccceeecC-------ceEEEe---CCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 701 GPAEIIIDG-------VSGFHI---DPNNGDESSNKIADFFEKCK-TDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 701 G~~EiI~dg-------~~G~lv---~p~d~e~lA~aI~~ll~~~~-~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
|+.|+|.++ .+|+++ ++.|+++++++|.+++..+. .++..+.+|++++++.+ +.|||+.++++|+++|
T Consensus 552 G~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Y 630 (725)
T 3nb0_A 552 GFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKAR 630 (725)
T ss_dssp HHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHH
T ss_pred ChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 999999876 369988 46688888888888876554 47888999999998776 7999999999999965
Q ss_pred h
Q 002909 770 S 770 (867)
Q Consensus 770 ~ 770 (867)
+
T Consensus 631 e 631 (725)
T 3nb0_A 631 Q 631 (725)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=1.7e-31 Score=303.25 Aligned_cols=242 Identities=12% Similarity=0.062 Sum_probs=179.9
Q ss_pred CCeEEEECCCChHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHH
Q 002909 409 KPDLIIGNYSDGNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEI 488 (867)
Q Consensus 409 kPDIIh~h~~~~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~ 488 (867)
++||||.+...... ...+++..++|++++.|+...... +. ... .....++.+++.+|.||++|+...
T Consensus 124 ~~DvIh~~~~~~~~-~~~~~~~~~~p~v~~~h~~~~~~~------~~----~~~--~~~~~~~~~~~~ad~vi~~S~~~~ 190 (406)
T 2hy7_A 124 ESDVIVFESGIAVA-FIELAKRVNPAAKLVYRASDGLST------IN----VAS--YIEREFDRVAPTLDVIALVSPAMA 190 (406)
T ss_dssp HCSEEEEESSGGGG-GHHHHHHHCTTSEEEEEESSCHHH------HT----CCH--HHHHHHHHHGGGCSEEEESCGGGG
T ss_pred CCCEEEECCchHHH-HHHHHHHhCCCEEEEEeccchhhc------cc----ccH--HHHHHHHHHHHhCCEEEEcCHHHH
Confidence 68999944322222 124567789999999997543110 00 000 111224457899999999998665
Q ss_pred hhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhccccccccccc
Q 002909 489 AGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGY 568 (867)
Q Consensus 489 ~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGl 568 (867)
+.+.+. . ++.+||||+|.+.|.+.... .
T Consensus 191 ~~~~~~-------------------------~-~i~vipngvd~~~f~~~~~~-------------------------~- 218 (406)
T 2hy7_A 191 AEVVSR-------------------------D-NVFHVGHGVDHNLDQLGDPS-------------------------P- 218 (406)
T ss_dssp GGCSCS-------------------------T-TEEECCCCBCTTHHHHHCSC-------------------------S-
T ss_pred HHHHhc-------------------------C-CEEEEcCCcChHhcCccccc-------------------------c-
Confidence 422110 2 79999999998766432100 0
Q ss_pred ccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEc
Q 002909 569 LADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWI 648 (867)
Q Consensus 569 l~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~fl 648 (867)
.+++++|+|+||+.+.||+ +..+.+..++++|+|+|+|+ ++++++.++|+|+
T Consensus 219 --~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~--------------------~~~~~l~~~V~f~ 270 (406)
T 2hy7_A 219 --YAEGIHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM--------------------GRHPGYGDNVIVY 270 (406)
T ss_dssp --CCSSEEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS--------------------CCCTTCCTTEEEE
T ss_pred --cCCCcEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch--------------------HHhcCCCCCEEEc
Confidence 2344789999999999998 33344456899999999874 3556788999999
Q ss_pred ccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHH-------HcCCCEEecCCCCccceeecCceEEE-eCCCCH
Q 002909 649 AAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAM-------NCGLPTFATNQGGPAEIIIDGVSGFH-IDPNNG 720 (867)
Q Consensus 649 G~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAM-------a~GlPVIat~~gG~~EiI~dg~~G~l-v~p~d~ 720 (867)
|+ ++.+++..+|+. ||+||+||..|+||++++||| +||+|||+|+. +.++.+|++ ++++|+
T Consensus 271 G~----~~~~~l~~~~~~-adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~ 339 (406)
T 2hy7_A 271 GE----MKHAQTIGYIKH-ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNA 339 (406)
T ss_dssp CC----CCHHHHHHHHHT-CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCH
T ss_pred CC----CCHHHHHHHHHh-cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCH
Confidence 95 556899999997 999999999999999999999 99999999987 667889999 999999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 721 DESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 721 e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
++++++|.+++ +|++ + ...++|||+.++++++++
T Consensus 340 ~~la~ai~~ll----~~~~---------~-~~~~~~sw~~~a~~~~~~ 373 (406)
T 2hy7_A 340 DSVIAAITQAL----EAPR---------V-RYRQCLNWSDTTDRVLDP 373 (406)
T ss_dssp HHHHHHHHHHH----HCCC---------C-CCSCCCBHHHHHHHHHCG
T ss_pred HHHHHHHHHHH----hCcc---------h-hhhhcCCHHHHHHHHHHh
Confidence 99999999988 5655 1 234789999999999884
No 19
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.96 E-value=5e-28 Score=284.97 Aligned_cols=171 Identities=9% Similarity=0.048 Sum_probs=152.3
Q ss_pred cccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEe-CCCCCCCCCChHHHHHHHHHHHHHHHcCCC
Q 002909 564 EHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVA-GFFDPSKSHDREEIAEIKKMHTLIEKYQLQ 642 (867)
Q Consensus 564 ~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG-~g~~~~~~~d~ee~~~~~~l~~li~~~~L~ 642 (867)
+.+|+ +++. +++++||+.+ ||++.+++++.++.+..|+++|+|+| +|+. .+.++++++++++.
T Consensus 369 ~~~~~--~~~~-~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~------------~~~l~~~~~~~~l~ 432 (568)
T 2vsy_A 369 TQCGL--PEQG-VVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGEA------------DARLRAFAHAQGVD 432 (568)
T ss_dssp GGGTC--CTTS-CEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTTH------------HHHHHHHHHHTTCC
T ss_pred cccCC--CCCC-EEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHHH------------HHHHHHHHHHcCCC
Confidence 55776 4444 5669999999 99999999999998888999999999 6543 67889999999998
Q ss_pred -CcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEe-------cCCC-------Cccceee
Q 002909 643 -GQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFA-------TNQG-------GPAEIII 707 (867)
Q Consensus 643 -~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIa-------t~~g-------G~~EiI~ 707 (867)
++|+|+|+ ++.+++..+|+. +|+||+||.+ +||++++|||+||+|||+ |+.| |..|+|.
T Consensus 433 ~~~v~~~g~----~~~~~~~~~~~~-adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~ 506 (568)
T 2vsy_A 433 AQRLVFMPK----LPHPQYLARYRH-ADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV 506 (568)
T ss_dssp GGGEEEECC----CCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC
T ss_pred hhHEEeeCC----CCHHHHHHHHhc-CCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc
Confidence 99999995 445789999987 9999999999 999999999999999999 9999 9999985
Q ss_pred cCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHh
Q 002909 708 DGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRI--YECYTWKIYANKVLNMGS 770 (867)
Q Consensus 708 dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v--~~~ysw~~~a~~ll~ly~ 770 (867)
+ |+++++++|..++ .|++.+++|++++++++ .+.|||+.++++++++|+
T Consensus 507 ~----------~~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~ 557 (568)
T 2vsy_A 507 A----------DDAAFVAKAVALA----SDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQ 557 (568)
T ss_dssp S----------SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred C----------CHHHHHHHHHHHh----cCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Confidence 4 8999999999888 89999999999999998 688999999999999664
No 20
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=3.1e-28 Score=282.10 Aligned_cols=321 Identities=11% Similarity=0.031 Sum_probs=212.7
Q ss_pred HHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhc-CCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhc
Q 002909 398 ATAKILDLMEGKPDLIIGNYSDGNLVASLMASKL-GITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQ 476 (867)
Q Consensus 398 ~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~-gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~ 476 (867)
+...+.+.. ..+||||+|.+...+++..++++. ++|++++.|..++.. . .+..+. +...-...+..
T Consensus 113 fa~~l~~~~-~~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~~----~-~~~~lp-------~~~~il~~ll~ 179 (482)
T 1uqt_A 113 LADKLLPLL-QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTP----E-IFNALP-------TYDTLLEQLCD 179 (482)
T ss_dssp HHHHHGGGC-CTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCH----H-HHTTST-------THHHHHHHHTT
T ss_pred HHHHHHHhc-CCCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCCH----H-HHhhCc-------cHHHHHHhhhc
Confidence 334444332 357999999887767777776654 799999999854322 1 111110 00001113456
Q ss_pred CCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhh
Q 002909 477 TDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELL 556 (867)
Q Consensus 477 aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l 556 (867)
+|.|...+......+-......... .....+. ....| . ..++.+||||||.+.|.+....... . . .
T Consensus 180 ~d~i~f~~~~~~~~f~~~~~~~l~~-~~~~~~~-~~~~g-~--~~~v~vip~GID~~~f~~~~~~~~~-~---~-~---- 245 (482)
T 1uqt_A 180 YDLLGFQTENDRLAFLDCLSNLTRV-TTRSAKS-HTAWG-K--AFRTEVYPIGIEPKEIAKQAAGPLP-P---K-L---- 245 (482)
T ss_dssp SSEEEESSHHHHHHHHHHHHHHSCE-EEETTTE-EEETT-E--EEEEEECCCCCCHHHHHHHHHSCCC-H---H-H----
T ss_pred cCeEEEECHHHHHHHHHHHHHHhCC-ccccCCe-EEECC-e--EEEEEEEeccCCHHHHHHHhcCcch-H---H-H----
Confidence 7887777654333211000000000 0000000 11112 1 3578999999998877542110000 0 0 0
Q ss_pred hcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCC----CeEEEEEeCCCCCCCCCChHHHHHHHHH
Q 002909 557 YSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRN----MVNLVVVAGFFDPSKSHDREEIAEIKKM 632 (867)
Q Consensus 557 ~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~----~v~LvIVG~g~~~~~~~d~ee~~~~~~l 632 (867)
...++.+| ++++|+++||+++.||++.+++|+.++.+.+| ++.|+++|++.. ...++.....+++
T Consensus 246 ---~~lr~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~---~~~~~~~~l~~~l 314 (482)
T 1uqt_A 246 ---AQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR---GDVQAYQDIRHQL 314 (482)
T ss_dssp ---HHHHHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCS---TTSHHHHHHHHHH
T ss_pred ---HHHHHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCc---cchHHHHHHHHHH
Confidence 00012222 57899999999999999999999999977665 478999997532 1123334455666
Q ss_pred HHHHHHcC----CC--CcEEE-cccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCC-----CEEecCCC
Q 002909 633 HTLIEKYQ----LQ--GQFRW-IAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGL-----PTFATNQG 700 (867)
Q Consensus 633 ~~li~~~~----L~--~~V~f-lG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~Gl-----PVIat~~g 700 (867)
++++.+++ .. ..|+| .| .++.+++..+|+. ||+||+||..||||++++||||||+ |+|+|+.+
T Consensus 315 ~~l~~~in~~~g~~~~~~v~~~~g----~v~~~el~~ly~~-ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~ 389 (482)
T 1uqt_A 315 ENEAGRINGKYGQLGWTPLYYLNQ----HFDRKLLMKIFRY-SDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA 389 (482)
T ss_dssp HHHHHHHHHHHCBTTBCSEEEECS----CCCHHHHHHHHHH-CSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTB
T ss_pred HHHHHHHhhhcccCCCceEEEeCC----CCCHHHHHHHHHH-ccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCC
Confidence 67666543 22 24665 46 4667899999997 9999999999999999999999997 89999998
Q ss_pred CccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 701 GPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 701 G~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
|..+.+ + +|++++|+|++++|++|.++++ ++++.++++++++++++ +.|||+..++++++.
T Consensus 390 G~~~~l-~--~g~lv~p~d~~~lA~ai~~lL~---~~~~~r~~~~~~~~~~v-~~~s~~~~a~~~l~~ 450 (482)
T 1uqt_A 390 GAANEL-T--SALIVNPYDRDEVAAALDRALT---MSLAERISRHAEMLDVI-VKNDINHWQECFISD 450 (482)
T ss_dssp GGGGTC-T--TSEEECTTCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred CCHHHh-C--CeEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 888887 2 7999999999999999999982 36788999999999998 569999999999984
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.96 E-value=1.7e-28 Score=272.50 Aligned_cols=283 Identities=12% Similarity=0.103 Sum_probs=200.4
Q ss_pred HHHHHHHHHcCCCCeEEEECCC-ChHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHh
Q 002909 397 DATAKILDLMEGKPDLIIGNYS-DGNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMN 475 (867)
Q Consensus 397 ~~~~~i~~~l~~kPDIIh~h~~-~~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~ 475 (867)
.+.+.+.+. +||+||+|.. ..++.+.++++..++|++++.|+..... .|.. +.. ........+
T Consensus 86 ~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~------~~~~------~~~-~~~~~~~~~ 149 (375)
T 3beo_A 86 GLDKVMKEA---KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRTWD------KYSP------YPE-EMNRQLTGV 149 (375)
T ss_dssp HHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCCSC------TTSS------TTH-HHHHHHHHH
T ss_pred HHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc------ccCC------Chh-HhhhhHHhh
Confidence 344444444 8999999865 3456667778889999998877642100 0100 000 111222345
Q ss_pred cCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCC-CCCCCCCCCchHhhhhccCCcchHH
Q 002909 476 QTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPG-ADQSVYFPYTEKQKRLTSFHPDIEE 554 (867)
Q Consensus 476 ~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnG-VD~~~f~p~~~~~~r~~~~~~~i~~ 554 (867)
.+|.++++|+...+.+.+ .|++ ..++.+|+|| +|...+.+........
T Consensus 150 ~~d~ii~~s~~~~~~~~~--------------------~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~~--------- 198 (375)
T 3beo_A 150 MADLHFSPTAKSATNLQK--------------------ENKD--ESRIFITGNTAIDALKTTVKETYSHPV--------- 198 (375)
T ss_dssp HCSEEEESSHHHHHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHCCSSCCCHH---------
T ss_pred hhheeeCCCHHHHHHHHH--------------------cCCC--cccEEEECChhHhhhhhhhhhhhhHHH---------
Confidence 599999999877652211 2443 5689999999 7865443321000000
Q ss_pred hhhcccccccccccccCCCCcEEEEEeccCCc-CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 002909 555 LLYSKEDNSEHIGYLADRKKPIIFSMARLDTV-KNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMH 633 (867)
Q Consensus 555 ~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~-Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~ 633 (867)
++.+ ++++.+++++||+.+. ||++.+++|+..+.+..+++++++ |+++. ..+.
T Consensus 199 --------~~~~----~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~-------------~~~~ 252 (375)
T 3beo_A 199 --------LEKL----GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMN-------------PVVR 252 (375)
T ss_dssp --------HHTT----TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSC-------------HHHH
T ss_pred --------HHhc----cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCC-------------HHHH
Confidence 0111 2344577899999876 999999999999987778898654 66643 1222
Q ss_pred HHHHHc-CCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCC-CCccceeecCce
Q 002909 634 TLIEKY-QLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQ-GGPAEIIIDGVS 711 (867)
Q Consensus 634 ~li~~~-~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~-gG~~EiI~dg~~ 711 (867)
+.++++ +..++|+|+|+ +...++..+|+. ||++|+|| |.+++|||+||+|||+++. ||..|++.+| +
T Consensus 253 ~~~~~~~~~~~~v~~~g~----~~~~~~~~~~~~-ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~ 321 (375)
T 3beo_A 253 ETANDILGDYGRIHLIEP----LDVIDFHNVAAR-SYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-T 321 (375)
T ss_dssp HHHHHHHTTCTTEEEECC----CCHHHHHHHHHT-CSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-S
T ss_pred HHHHHHhhccCCEEEeCC----CCHHHHHHHHHh-CcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-c
Confidence 233332 33478999984 445688999987 99999998 7779999999999999964 9999999888 9
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 712 GFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 712 G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
|+++++ |+++++++|.+++ +|++.+++|++++++.. +.|+|+.+++.+.+++
T Consensus 322 g~~v~~-d~~~la~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 322 LKLAGT-DEETIFSLADELL----SDKEAHDKMSKASNPYG-DGRASERIVEAILKHF 373 (375)
T ss_dssp EEECCS-CHHHHHHHHHHHH----HCHHHHHHHCCCCCTTC-CSCHHHHHHHHHHHHT
T ss_pred eEEcCC-CHHHHHHHHHHHH----hChHhHhhhhhcCCCCC-CCcHHHHHHHHHHHHh
Confidence 999986 9999999999988 89999999999998876 6899999999998854
No 22
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=9.2e-28 Score=267.78 Aligned_cols=293 Identities=11% Similarity=0.099 Sum_probs=203.1
Q ss_pred HHHHHHHHHHcCCCCeEEEECCC-ChHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHH
Q 002909 396 QDATAKILDLMEGKPDLIIGNYS-DGNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAM 474 (867)
Q Consensus 396 ~~~~~~i~~~l~~kPDIIh~h~~-~~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial 474 (867)
..+.+.+.+. +||+||+|.. ..++.+.++++..++|++++.|+..... .|..+ .. ........
T Consensus 76 ~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~------~~~~~------~~-~~~~~~~~ 139 (384)
T 1vgv_A 76 EGLKPILAEF---KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD------LYSPW------PE-EANRTLTG 139 (384)
T ss_dssp HHHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC------TTSST------TH-HHHHHHHH
T ss_pred HHHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc------ccCCC------ch-HhhHHHHH
Confidence 3444444444 8999999975 4456667778889999999988763211 01000 00 01111234
Q ss_pred hcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCC-CCCCCCCCchHhhhhccCCcchH
Q 002909 475 NQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGA-DQSVYFPYTEKQKRLTSFHPDIE 553 (867)
Q Consensus 475 ~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGV-D~~~f~p~~~~~~r~~~~~~~i~ 553 (867)
+.+|.++++|+...+.+. ..|++ ..++.+|+||+ |...+.+. ..... ...
T Consensus 140 ~~~d~ii~~s~~~~~~l~--------------------~~g~~--~~~i~vi~n~~~d~~~~~~~-~~~~~-----~~~- 190 (384)
T 1vgv_A 140 HLAMYHFSPTETSRQNLL--------------------RENVA--DSRIFITGNTVIDALLWVRD-QVMSS-----DKL- 190 (384)
T ss_dssp TTCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHH-HTTTC-----HHH-
T ss_pred hhccEEEcCcHHHHHHHH--------------------HcCCC--hhhEEEeCChHHHHHHhhhh-ccccc-----hhh-
Confidence 569999999987765221 12444 56899999995 43211110 00000 000
Q ss_pred Hhhhcccccccccc-cccCCCC-cEEEEEeccCCc-CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHH
Q 002909 554 ELLYSKEDNSEHIG-YLADRKK-PIIFSMARLDTV-KNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIK 630 (867)
Q Consensus 554 ~~l~~~~~~~~~lG-ll~~~~k-~iIl~vGRL~~~-Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~ 630 (867)
..+.++.+| + ++++ .+++++||+.+. ||++.+++|+..+.+..++++++++++... ...+
T Consensus 191 -----~~~~~~~~~~~--~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~----------~~~~ 253 (384)
T 1vgv_A 191 -----RSELAANYPFI--DPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNP----------NVRE 253 (384)
T ss_dssp -----HHHHHTTCTTC--CTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCH----------HHHH
T ss_pred -----hHHHHHhcccc--CCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCH----------HHHH
Confidence 000113445 4 3334 578899999986 999999999999988778999988644211 1234
Q ss_pred HHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCC-CCccceeecC
Q 002909 631 KMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQ-GGPAEIIIDG 709 (867)
Q Consensus 631 ~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~-gG~~EiI~dg 709 (867)
.+++++. ..++|+|+|+ +...++..+|+. ||+||+|| |.+++|||+||+|||+++. ||..|++.+|
T Consensus 254 ~l~~~~~---~~~~v~~~g~----~~~~~~~~~~~~-ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g 320 (384)
T 1vgv_A 254 PVNRILG---HVKNVILIDP----QEYLPFVWLMNH-AWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTAG 320 (384)
T ss_dssp HHHHHHT---TCTTEEEECC----CCHHHHHHHHHH-CSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHHT
T ss_pred HHHHHhh---cCCCEEEeCC----CCHHHHHHHHHh-CcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhCC
Confidence 4444432 2468999884 345689999987 99999999 4458999999999999987 9999999888
Q ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002909 710 VSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGS 770 (867)
Q Consensus 710 ~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly~ 770 (867)
+|+++++ |+++++++|.+++ .|++.+++|++++++.. +.|+|+.+++.+.++|.
T Consensus 321 -~g~lv~~-d~~~la~~i~~ll----~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 374 (384)
T 1vgv_A 321 -TVRLVGT-DKQRIVEEVTRLL----KDENEYQAMSRAHNPYG-DGQACSRILEALKNNRI 374 (384)
T ss_dssp -SEEEECS-SHHHHHHHHHHHH----HCHHHHHHHHSSCCTTC-CSCHHHHHHHHHHHTCC
T ss_pred -ceEEeCC-CHHHHHHHHHHHH----hChHHHhhhhhccCCCc-CCCHHHHHHHHHHHHHH
Confidence 9999987 9999999999988 89999999999998775 78999999999988543
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.94 E-value=1.2e-26 Score=235.47 Aligned_cols=192 Identities=17% Similarity=0.212 Sum_probs=160.6
Q ss_pred eCCCCCCCCCC--CCchHhhhhccCCcchHHhhhcccccccccccccCCCCcEEEEEeccC-CcCChHHHHHHHHHhH--
Q 002909 526 AAPGADQSVYF--PYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLD-TVKNITGLTEWYGKNK-- 600 (867)
Q Consensus 526 IpnGVD~~~f~--p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~-~~Kgid~LieA~~~l~-- 600 (867)
||||+|.+.|. |....... .....++.+|+ + ++++|+++||+. +.||++.+++++..+.
T Consensus 2 ipngvd~~~f~~~~~~~~~~~-------------~~~~~r~~~~~--~-~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~ 65 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDE-------------RKKSLLSKFGM--D-EGVTFMFIGRFDRGQKGVDVLLKAIEILSSK 65 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHH-------------HHHHHHHHTTC--C-SCEEEEEESCBCSSSSCHHHHHHHHHHHTTS
T ss_pred CCCccChhhccccccccchhh-------------HHHHHHHHcCC--C-CCCEEEEeeccccccCCHHHHHHHHHHHHhh
Confidence 78999999998 76410000 00011245666 3 456999999999 9999999999999997
Q ss_pred ccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEE-cccccCCCChHHHHHHHHccCcEEEEcCCCCC
Q 002909 601 RLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRW-IAAQTDRYRNGELYRCIADTKGAFVQPALYEA 679 (867)
Q Consensus 601 ~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~f-lG~~~d~v~~~el~~~la~~aDvfV~PS~~Eg 679 (867)
+..++++|+|+|+++. .+.+.+++++++++ +|+| +|+ ++.+++..+++. ||++|+||.+|+
T Consensus 66 ~~~~~~~l~i~G~~~~----------~~~~~l~~~~~~~~---~v~~~~g~----~~~~~~~~~~~~-ad~~l~ps~~e~ 127 (200)
T 2bfw_A 66 KEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG---NVKVITEM----LSREFVRELYGS-VDFVIIPSYFEP 127 (200)
T ss_dssp GGGGGEEEEEECCBCH----------HHHHHHHHHHHHCT---TEEEECSC----CCHHHHHHHHTT-CSEEEECCSCCS
T ss_pred ccCCCeEEEEECCCCh----------HHHHHHHHHHHhcC---CEEEEecc----CCHHHHHHHHHH-CCEEEECCCCCC
Confidence 6678999999999862 34677888888886 8999 995 556789999997 999999999999
Q ss_pred CCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHhCC
Q 002909 680 FGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKT-DAGYWNQMSAAGRQRIYECYT 757 (867)
Q Consensus 680 fGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~-dp~~~~~m~~~ar~~v~~~ys 757 (867)
||++++|||+||+|||+++.||..|++ ++.+|++++++|+++++++|.+++ . |++.+++|++++++++.+ ||
T Consensus 128 ~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 128 FGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL----ELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp SCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHH-TC
T ss_pred ccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHh-cC
Confidence 999999999999999999999999999 999999999999999999999988 7 999999999999999977 86
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.93 E-value=4.2e-25 Score=254.26 Aligned_cols=317 Identities=12% Similarity=0.032 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHcC-CCCeEEEECCCChHHHHHHHHHh-cCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHH
Q 002909 395 AQDATAKILDLME-GKPDLIIGNYSDGNLVASLMASK-LGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLI 472 (867)
Q Consensus 395 ~~~~~~~i~~~l~-~kPDIIh~h~~~~~l~a~lla~~-~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~i 472 (867)
...+...+..... ..-|+|..|.+...+++..+.++ .+.++.+..|..++..-.+..+.+ + +...-+.
T Consensus 134 N~~fA~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~-------~---~r~ell~ 203 (496)
T 3t5t_A 134 TRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPK-------E---IRTGILH 203 (496)
T ss_dssp HHHHHHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHHHTTSCH-------H---HHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCCHHHHhhCcH-------h---HHHHHHH
Confidence 3344444545432 35689999998887777777654 578899999986544321111110 0 0011123
Q ss_pred HHhcCCEEEecCHHHHhhcCCCCCccccccccccccc-------eeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhh
Q 002909 473 AMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGL-------CRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRL 545 (867)
Q Consensus 473 al~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l-------~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~ 545 (867)
.|..+|.|...|+..+..+-+.... .+|++ .....|. ..++.++|+|||.+.|.+..... +
T Consensus 204 gll~~DligF~t~~y~~~Fl~~~~r-------~l~g~~~~~~~~~v~~~gr---~v~v~viP~GID~~~f~~~~~~~-~- 271 (496)
T 3t5t_A 204 GMLPATTIGFFADRWCRNFLESVAD-------LLPDARIDREAMTVEWRGH---RTRLRTMPLGYSPLTLDGRNPQL-P- 271 (496)
T ss_dssp HHTTSSEEEESSHHHHHHHHHHHHH-------HCTTCEEETTTTEEEETTE---EEEEEECCCCBCGGGC----CCC-C-
T ss_pred HHHhCCEEEEecHHHHHHHHHHHHH-------HhcCCcccccCCeEEECCE---EEEEEEeccEeCHHHhchhhHHH-H-
Confidence 7889999999999776532211100 01000 0011121 23788999999999987754210 0
Q ss_pred ccCCcchHHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCC---eEEEEEeCCCCCCCCCC
Q 002909 546 TSFHPDIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNM---VNLVVVAGFFDPSKSHD 622 (867)
Q Consensus 546 ~~~~~~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~---v~LvIVG~g~~~~~~~d 622 (867)
.. .++.+| ++++|+++||+++.||++.+++|| ++.+.+|+ +.|++||.... ...
T Consensus 272 ----~~----------lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr---~~~ 328 (496)
T 3t5t_A 272 ----EG----------IEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNR---LYV 328 (496)
T ss_dssp ----TT----------HHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCC---TTS
T ss_pred ----HH----------HHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCC---CCc
Confidence 01 112233 578999999999999999999999 88776665 66888886432 223
Q ss_pred hHHHHHHHHHHHHHHHcCC---CCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcC---CCEEe
Q 002909 623 REEIAEIKKMHTLIEKYQL---QGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCG---LPTFA 696 (867)
Q Consensus 623 ~ee~~~~~~l~~li~~~~L---~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~G---lPVIa 696 (867)
++...+.+++++++.+.+. ...|+|+| .++.+++..+|.. ||+||+||..||||++++|||||| .|+|+
T Consensus 329 ~~y~~l~~~l~~lv~~in~~~g~~~V~f~g----~v~~~el~aly~~-ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVl 403 (496)
T 3t5t_A 329 PANADYVHRVETAVAEANAELGSDTVRIDN----DNDVNHTIACFRR-ADLLIFNSTVDGQNLSTFEAPLVNERDADVIL 403 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSEEEEE----CCCHHHHHHHHHH-CSEEEECCSSBSCCSHHHHHHHHCSSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhccccCCcCEEEeC----CCCHHHHHHHHHh-ccEEEECcccccCChhHHHHHHhCCCCCCEEE
Confidence 4445566677777766532 11799999 4567899999997 999999999999999999999997 89999
Q ss_pred cCCCCccceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002909 697 TNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLN 767 (867)
Q Consensus 697 t~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ 767 (867)
|+.+|..+.+ +.+|++++|.|++++|++|.++++ ++++.++++.+++++++ ..+|+...++.+++
T Consensus 404 Se~aGa~~~l--~~~allVnP~D~~~lA~AI~~aL~---m~~~er~~r~~~~~~~V-~~~d~~~W~~~fl~ 468 (496)
T 3t5t_A 404 SETCGAAEVL--GEYCRSVNPFDLVEQAEAISAALA---AGPRQRAEAAARRRDAA-RPWTLEAWVQAQLD 468 (496)
T ss_dssp ETTBTTHHHH--GGGSEEECTTBHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH-TTCBHHHHHHHHHH
T ss_pred eCCCCCHHHh--CCCEEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHH
Confidence 9999999888 457999999999999999999985 67788999999999998 78999999998887
No 25
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=3.8e-25 Score=217.78 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=140.8
Q ss_pred CcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccC
Q 002909 574 KPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTD 653 (867)
Q Consensus 574 k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d 653 (867)
+++|+++||+.+.||++.+++|+..+. ..++++|+|+|+|+. .+.++++++++++ +|+| |+
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~--~v~~-g~--- 62 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPD------------EKKIKLLAQKLGV--KAEF-GF--- 62 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTT------------HHHHHHHHHHHTC--EEEC-CC---
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCcc------------HHHHHHHHHHcCC--eEEE-ee---
Confidence 468999999999999999999999985 347999999999876 5778889999987 8999 95
Q ss_pred CCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCC-CEEe-cCCCCccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 654 RYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGL-PTFA-TNQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 654 ~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~Gl-PVIa-t~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
++.+++..+|+. +|++|+||.+|+||++++|||+||+ |||+ ++.||..+++.++.+ +++++|+++++++|.+++
T Consensus 63 -~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~ 138 (166)
T 3qhp_A 63 -VNSNELLEILKT-CTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWL 138 (166)
T ss_dssp -CCHHHHHHHHTT-CSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHh-CCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHH
Confidence 556899999997 9999999999999999999999998 9999 568899999987655 788999999999999988
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 002909 732 EKCKTDAGYWNQMSAAGRQRIYECYTWKIYANK 764 (867)
Q Consensus 732 ~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ 764 (867)
.|++.+++|++++++++ ++|||+.++++
T Consensus 139 ----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 139 ----ENKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp ----HCHHHHHHHHHHHHHHH-HHHC-------
T ss_pred ----hCHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 79999999999999988 89999998764
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.91 E-value=1.1e-23 Score=234.61 Aligned_cols=266 Identities=12% Similarity=0.065 Sum_probs=179.6
Q ss_pred CCCeEEEECCCCh-HHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHH
Q 002909 408 GKPDLIIGNYSDG-NLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQ 486 (867)
Q Consensus 408 ~kPDIIh~h~~~~-~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~ 486 (867)
.+||+||+|.... ++.+.++++..|+|++++.|+..... | .. .+. .........+.+|.++++|+.
T Consensus 90 ~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~-------~--~~---~~~-~~~~~~~~~~~~~~~~~~s~~ 156 (376)
T 1v4v_A 90 MGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGN-------L--KE---PFP-EEANRRLTDVLTDLDFAPTPL 156 (376)
T ss_dssp TTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSC-------T--TS---STT-HHHHHHHHHHHCSEEEESSHH
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcccc-------c--cC---CCc-hHHHHHHHHHHhceeeCCCHH
Confidence 4899999986543 45567778889999875444331100 0 00 000 001123355679999999987
Q ss_pred HHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCC-CCCCCCCCchHhhhhccCCcchHHhhhcccccccc
Q 002909 487 EIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGA-DQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEH 565 (867)
Q Consensus 487 ~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGV-D~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~ 565 (867)
..+.+.+ .|++ ..++.+++|++ |...+.+ . + .. .++.
T Consensus 157 ~~~~l~~--------------------~g~~--~~ki~vi~n~~~d~~~~~~---~--~-~~--------------~~~~ 194 (376)
T 1v4v_A 157 AKANLLK--------------------EGKR--EEGILVTGQTGVDAVLLAA---K--L-GR--------------LPEG 194 (376)
T ss_dssp HHHHHHT--------------------TTCC--GGGEEECCCHHHHHHHHHH---H--H-CC--------------CCTT
T ss_pred HHHHHHH--------------------cCCC--cceEEEECCchHHHHhhhh---h--h-hH--------------HHHh
Confidence 6652221 2444 56899999965 4211100 0 0 00 0011
Q ss_pred cccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCc
Q 002909 566 IGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVV-AGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQ 644 (867)
Q Consensus 566 lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~ 644 (867)
+ ++++++++++||+...||++.+++|+..+.+..++++++++ |+++ ...+.+++++. ..++
T Consensus 195 ~----~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~-----------~~~~~l~~~~~---~~~~ 256 (376)
T 1v4v_A 195 L----PEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP-----------VVREAVFPVLK---GVRN 256 (376)
T ss_dssp C----CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH-----------HHHHHHHHHHT---TCTT
T ss_pred c----CCCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH-----------HHHHHHHHHhc---cCCC
Confidence 1 23456778899998889999999999999877788998886 5442 12344555443 2468
Q ss_pred EEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec-CCCCccceeecCceEEEeCCCCHHHH
Q 002909 645 FRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT-NQGGPAEIIIDGVSGFHIDPNNGDES 723 (867)
Q Consensus 645 V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat-~~gG~~EiI~dg~~G~lv~p~d~e~l 723 (867)
|+|+|+ +...++..+|+. ||+||.|| | |+ ++|||+||+|||++ +.||..+++.++ +|++++ .|++++
T Consensus 257 v~~~g~----~g~~~~~~~~~~-ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~l 324 (376)
T 1v4v_A 257 FVLLDP----LEYGSMAALMRA-SLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGV 324 (376)
T ss_dssp EEEECC----CCHHHHHHHHHT-EEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHH
T ss_pred EEEECC----CCHHHHHHHHHh-CcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCHHHH
Confidence 999974 334578888887 99999998 3 44 88999999999997 578888887655 899995 599999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002909 724 SNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLN 767 (867)
Q Consensus 724 A~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ 767 (867)
+++|.+++ .|++.+++|++++ +.|+|...++++.+
T Consensus 325 a~~i~~ll----~d~~~~~~~~~~~-----~~~~~~~~~~~i~~ 359 (376)
T 1v4v_A 325 YRVVKGLL----ENPEELSRMRKAK-----NPYGDGKAGLMVAR 359 (376)
T ss_dssp HHHHHHHH----TCHHHHHHHHHSC-----CSSCCSCHHHHHHH
T ss_pred HHHHHHHH----hChHhhhhhcccC-----CCCCCChHHHHHHH
Confidence 99999988 8999999998643 45666666666655
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.90 E-value=5.3e-23 Score=231.02 Aligned_cols=205 Identities=12% Similarity=0.098 Sum_probs=158.2
Q ss_pred HHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcch
Q 002909 473 AMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDI 552 (867)
Q Consensus 473 al~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i 552 (867)
.++.+|.|++.|+..++.+.+ .|+ . ++.||+||. |.+.... +
T Consensus 150 ~~~~~d~ii~~S~~~~~~l~~--------------------~g~---~-ki~vi~n~~----f~~~~~~--~-------- 191 (374)
T 2xci_A 150 LSKKFDLIIMRTQEDVEKFKT--------------------FGA---K-RVFSCGNLK----FICQKGK--G-------- 191 (374)
T ss_dssp HHTTCSEEEESCHHHHHHHHT--------------------TTC---C-SEEECCCGG----GCCCCCS--C--------
T ss_pred HHHhCCEEEECCHHHHHHHHH--------------------cCC---C-eEEEcCCCc----cCCCcCh--h--------
Confidence 678999999999987763322 133 3 899999973 2221100 0
Q ss_pred HHhhhcccccccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHH
Q 002909 553 EELLYSKEDNSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKM 632 (867)
Q Consensus 553 ~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l 632 (867)
.. + .++++++.|+ ..||++.+++|+..+.+..++++|+|+|+|+. ..+++
T Consensus 192 -----------~~--l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~-----------~~~~l 241 (374)
T 2xci_A 192 -----------IK--L----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE-----------NAKIF 241 (374)
T ss_dssp -----------CC--C----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG-----------GHHHH
T ss_pred -----------hh--h----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH-----------HHHHH
Confidence 00 1 1266777665 46899999999999988889999999998864 12467
Q ss_pred HHHHHHcCCC--------CcEEEcccccCCCChHHHHHHHHccCcEEEEcCC-CCCCCHHHHHHHHcCCCEEec-CCCCc
Q 002909 633 HTLIEKYQLQ--------GQFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL-YEAFGLTVIEAMNCGLPTFAT-NQGGP 702 (867)
Q Consensus 633 ~~li~~~~L~--------~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~-~EgfGltvlEAMa~GlPVIat-~~gG~ 702 (867)
+++++++++. ++|.+.|.. +++..+|+. ||++++||. .|++|++++||||||+|||++ +.+|.
T Consensus 242 ~~~~~~~gl~~~~~~~~~~~v~~~~~~------~dl~~~y~~-aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~ 314 (374)
T 2xci_A 242 EKKARDFGFKTSFFENLEGDVILVDRF------GILKELYPV-GKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKV 314 (374)
T ss_dssp HHHHHHTTCCEEETTCCCSSEEECCSS------SCHHHHGGG-EEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTS
T ss_pred HHHHHHCCCceEEecCCCCcEEEECCH------HHHHHHHHh-CCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccCh
Confidence 8888888876 578888753 357888886 999888765 577899999999999999975 78999
Q ss_pred cceeecC-ceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCC
Q 002909 703 AEIIIDG-VSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYT 757 (867)
Q Consensus 703 ~EiI~dg-~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ys 757 (867)
.|++.+. .+|+++.++|+++++++|.+++ +| +.+++|+++|++++.++++
T Consensus 315 ~e~~~~~~~~G~l~~~~d~~~La~ai~~ll----~d-~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 315 NDLKEFLEKEGAGFEVKNETELVTKLTELL----SV-KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp HHHHHHHHHTTCEEECCSHHHHHHHHHHHH----HS-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEeCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHhccc
Confidence 9988763 5788888899999999999998 78 8899999999999876543
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.89 E-value=6.5e-23 Score=205.34 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=133.6
Q ss_pred CCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHH--HcCCCCcEEEc
Q 002909 571 DRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIE--KYQLQGQFRWI 648 (867)
Q Consensus 571 ~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~--~~~L~~~V~fl 648 (867)
++++++|+|+||+.+.||++.+++++..+ ++++|+|+|+++. .+.++++++ ++++.++|+|+
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~------------~~~l~~~~~~~~~~l~~~v~~~ 83 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK------------GDHAERYARKIMKIAPDNVKFL 83 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT------------TSTHHHHHHHHHHHSCTTEEEE
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc------------HHHHHHHHHhhhcccCCcEEEe
Confidence 67889999999999999999999999987 5799999999876 245677777 77889999999
Q ss_pred ccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEeCCCCHHHHHHHHH
Q 002909 649 AAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHIDPNNGDESSNKIA 728 (867)
Q Consensus 649 G~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~ 728 (867)
|+ ++.+++..+++. +|++|+||..|+||++++|||+||+|||+++.|+..|++.++.+|+++ ++|+++++++|.
T Consensus 84 g~----~~~~e~~~~~~~-adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~ 157 (177)
T 2f9f_A 84 GS----VSEEELIDLYSR-CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMK 157 (177)
T ss_dssp ES----CCHHHHHHHHHH-CSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHH
T ss_pred CC----CCHHHHHHHHHh-CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHH
Confidence 95 556789999997 999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhcCHHH-HHHHHHHH
Q 002909 729 DFFEKCKTDAGY-WNQMSAAG 748 (867)
Q Consensus 729 ~ll~~~~~dp~~-~~~m~~~a 748 (867)
+++ .|++. ++++.+++
T Consensus 158 ~l~----~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 158 KVS----KNPDKFKKDCFRRA 174 (177)
T ss_dssp HHH----HCTTTTHHHHHHHH
T ss_pred HHH----hCHHHHHHHHHHHH
Confidence 988 67664 44444333
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.82 E-value=5.3e-19 Score=198.94 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=126.6
Q ss_pred CCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 571 DRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 571 ~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
+++..+++++|++. .|+.+.+.+++..+.+. ++++++++++... . +.+. ++.++|+|.|+
T Consensus 240 ~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~-----~------~~l~------~~~~~v~~~~~ 299 (412)
T 3otg_A 240 TARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLD-----V------SGLG------EVPANVRLESW 299 (412)
T ss_dssp TTSCEEEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCC-----C------TTCC------CCCTTEEEESC
T ss_pred CCCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCC-----h------hhhc------cCCCcEEEeCC
Confidence 34455678889986 77888888888877653 5777777765430 0 1111 35689999997
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCCC--CHHHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDPN--NGDESS 724 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p~--d~e~lA 724 (867)
. + +..+++. ||+||.++ .+.+++|||+||+|+|++..++ ..+.+.++++|++++++ |+++++
T Consensus 300 ~-~------~~~~l~~-ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~ 367 (412)
T 3otg_A 300 V-P------QAALLPH-VDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVS 367 (412)
T ss_dssp C-C------HHHHGGG-CSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHH
T ss_pred C-C------HHHHHhc-CcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHH
Confidence 5 2 4555565 99999875 2479999999999999976654 67888888899999987 899999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002909 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGS 770 (867)
Q Consensus 725 ~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly~ 770 (867)
++|.+++ .|++.+++|++.+++.. +.++|+.+++.+++++.
T Consensus 368 ~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 368 GAAKRLL----AEESYRAGARAVAAEIA-AMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-HSCCHHHHHTTHHHHHC
T ss_pred HHHHHHH----hCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhc
Confidence 9999988 89999999999998876 78899999999998653
No 30
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.80 E-value=1.4e-18 Score=192.43 Aligned_cols=247 Identities=13% Similarity=0.073 Sum_probs=173.1
Q ss_pred CCCeEEEECCCCh---HHHHHHHHH--hcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEe
Q 002909 408 GKPDLIIGNYSDG---NLVASLMAS--KLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIIT 482 (867)
Q Consensus 408 ~kPDIIh~h~~~~---~l~a~lla~--~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa 482 (867)
.++|+|+.+++.. .+.+.++.+ +.++|+|+.+|++++..... ..+ .. ..|...+++||.||+
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~~---------~~~--~~--~~E~~~y~~aD~Ii~ 139 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSG---------NFY--LM--DRTIAYYNKADVVVA 139 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCGG---------GGG--GH--HHHHHHHTTCSEEEE
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCcc---------chh--hH--HHHHHHHHHCCEEEE
Confidence 6899999876643 233444444 45999999999998765321 111 11 147779999999999
Q ss_pred cCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhccccc
Q 002909 483 STYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDN 562 (867)
Q Consensus 483 ~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~ 562 (867)
.|+..++.+. ..|++ ..++.++++. |.. .+..
T Consensus 140 ~S~~~~~~l~--------------------~~G~~--~~ki~~~~~~-~~~--~~~~----------------------- 171 (339)
T 3rhz_A 140 PSQKMIDKLR--------------------DFGMN--VSKTVVQGMW-DHP--TQAP----------------------- 171 (339)
T ss_dssp SCHHHHHHHH--------------------HTTCC--CSEEEECCSC-CCC--CCCC-----------------------
T ss_pred CCHHHHHHHH--------------------HcCCC--cCceeecCCC-Ccc--Cccc-----------------------
Confidence 9998776322 23544 4566444332 211 0100
Q ss_pred ccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCC
Q 002909 563 SEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQ 642 (867)
Q Consensus 563 ~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~ 642 (867)
... +.++++|+|+|+++....+.. ..++++|+|+|+|+. . .++
T Consensus 172 ---~~~--~~~~~~i~yaG~l~k~~~L~~----------l~~~~~f~ivG~G~~-------------~---------~l~ 214 (339)
T 3rhz_A 172 ---MFP--AGLKREIHFPGNPERFSFVKE----------WKYDIPLKVYTWQNV-------------E---------LPQ 214 (339)
T ss_dssp ---CCC--CEEEEEEEECSCTTTCGGGGG----------CCCSSCEEEEESCCC-------------C---------CCT
T ss_pred ---ccc--cCCCcEEEEeCCcchhhHHHh----------CCCCCeEEEEeCCcc-------------c---------CcC
Confidence 000 335678999999995333222 247899999999976 0 244
Q ss_pred CcEEEcccccCCCChHHHHHHHHccCcEEEEc-CC------CCCCCHHHHHHHHcCCCEEecCCCCccceeecCceEEEe
Q 002909 643 GQFRWIAAQTDRYRNGELYRCIADTKGAFVQP-AL------YEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHI 715 (867)
Q Consensus 643 ~~V~flG~~~d~v~~~el~~~la~~aDvfV~P-S~------~EgfGltvlEAMa~GlPVIat~~gG~~EiI~dg~~G~lv 715 (867)
+|+|+|+ ++.+|+..+++. +|+.+.+ +. ...+|.+++||||||+|||+++.|+..++|.++.+|+.+
T Consensus 215 -nV~f~G~----~~~~el~~~l~~-~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~ 288 (339)
T 3rhz_A 215 -NVHKINY----RPDEQLLMEMSQ-GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIV 288 (339)
T ss_dssp -TEEEEEC----CCHHHHHHHHHT-EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEE
T ss_pred -CEEEeCC----CCHHHHHHHHHh-CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEe
Confidence 9999995 667899999976 6676665 11 125689999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002909 716 DPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLN 767 (867)
Q Consensus 716 ~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ 767 (867)
+ +.++++++|..+ +++.+++|++++++.. +.++|..++++.+.
T Consensus 289 ~--~~~e~~~~i~~l------~~~~~~~m~~na~~~a-~~~~~~~f~k~~l~ 331 (339)
T 3rhz_A 289 K--DVEEAIMKVKNV------NEDEYIELVKNVRSFN-PILRKGFFTRRLLT 331 (339)
T ss_dssp S--SHHHHHHHHHHC------CHHHHHHHHHHHHHHT-HHHHTTHHHHHHHH
T ss_pred C--CHHHHHHHHHHh------CHHHHHHHHHHHHHHH-HHhhccHHHHHHHH
Confidence 7 678888888653 4677899999999875 56777777666554
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.79 E-value=1.9e-17 Score=185.25 Aligned_cols=342 Identities=15% Similarity=0.079 Sum_probs=202.8
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCCCCCCCCCCCccccc
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIPNSKGTKCSQELEPI 358 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~~~~g~~~~~~~e~i 358 (867)
|..||+|.+ |+ |||-..-.+ -++++|+++||+|. ++|.. .|. +.+.+
T Consensus 1 M~~~i~i~~-----------GG--TgGHi~pal--------ala~~L~~~g~~V~----~vg~~----~g~----e~~~v 47 (365)
T 3s2u_A 1 MKGNVLIMA-----------GG--TGGHVFPAL--------ACAREFQARGYAVH----WLGTP----RGI----ENDLV 47 (365)
T ss_dssp --CEEEEEC-----------CS--SHHHHHHHH--------HHHHHHHHTTCEEE----EEECS----SST----HHHHT
T ss_pred CCCcEEEEc-----------CC--CHHHHHHHH--------HHHHHHHhCCCEEE----EEECC----chH----hhchh
Confidence 567887764 22 788765556 46668888999998 88752 111 11111
Q ss_pred cCCCCeEEEEccCCCccc-ccccccccccchhhHHHHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCcEEE
Q 002909 359 YDTKHSHILRIPFKTEQA-ILPQWVSRFDIYPYLGRFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGITQAT 437 (867)
Q Consensus 359 ~~~~~v~I~rvp~~~~~~-~l~~~isr~~i~p~l~~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~V~ 437 (867)
...++.+..+|.....+ ...+++. ..+..+..+ ..+.+.+.+. +||+|+++....+..+.++++.+|+|+++
T Consensus 48 -~~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~---~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 48 -PKAGLPLHLIQVSGLRGKGLKSLVK--APLELLKSL-FQALRVIRQL---RPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp -GGGTCCEEECC----------------CHHHHHHHH-HHHHHHHHHH---CCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred -hhcCCcEEEEECCCcCCCCHHHHHH--HHHHHHHHH-HHHHHHHHhc---CCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 11245555555433221 0111111 112222211 1233344443 99999999877777788889999999985
Q ss_pred EEcCCcccccccchhhhhhcCccccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCC
Q 002909 438 IAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGIN 517 (867)
Q Consensus 438 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~ 517 (867)
.-.+..+ +. ..++..+.++.|.+..+... +
T Consensus 121 he~n~~~------G~----------------~nr~l~~~a~~v~~~~~~~~------------------~---------- 150 (365)
T 3s2u_A 121 HEQNAVA------GT----------------ANRSLAPIARRVCEAFPDTF------------------P---------- 150 (365)
T ss_dssp EECSSSC------CH----------------HHHHHGGGCSEEEESSTTSS------------------C----------
T ss_pred Eecchhh------hh----------------HHHhhccccceeeecccccc------------------c----------
Confidence 3322111 00 11224456888776553110 0
Q ss_pred CCCCcEEEeCCCCCCCCCCCCchHhhhhccCCcchHHhhhcccccccccccccCCCCcE-EEEEeccCCcCChHHHHHHH
Q 002909 518 VFDPKFNIAAPGADQSVYFPYTEKQKRLTSFHPDIEELLYSKEDNSEHIGYLADRKKPI-IFSMARLDTVKNITGLTEWY 596 (867)
Q Consensus 518 ~~~~ki~VIpnGVD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~lGll~~~~k~i-Il~vGRL~~~Kgid~LieA~ 596 (867)
..+++.++.|.+..+.+.... ...++ +++++. +++.|++...+..+.+.+++
T Consensus 151 -~~~k~~~~g~pvr~~~~~~~~------------------------~~~~~--~~~~~~ilv~gGs~g~~~~~~~~~~al 203 (365)
T 3s2u_A 151 -ASDKRLTTGNPVRGELFLDAH------------------------ARAPL--TGRRVNLLVLGGSLGAEPLNKLLPEAL 203 (365)
T ss_dssp -C---CEECCCCCCGGGCCCTT------------------------SSCCC--TTSCCEEEECCTTTTCSHHHHHHHHHH
T ss_pred -CcCcEEEECCCCchhhccchh------------------------hhccc--CCCCcEEEEECCcCCccccchhhHHHH
Confidence 044667777877755443221 12233 445554 45557888888888888998
Q ss_pred HHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCC
Q 002909 597 GKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL 676 (867)
Q Consensus 597 ~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~ 676 (867)
..+... .+++++++++..+ .+.+.+..++.+ .++++.++.+| +..+|+. ||++|.-+
T Consensus 204 ~~l~~~-~~~~vi~~~G~~~------------~~~~~~~~~~~~--~~~~v~~f~~d------m~~~l~~-aDlvI~ra- 260 (365)
T 3s2u_A 204 AQVPLE-IRPAIRHQAGRQH------------AEITAERYRTVA--VEADVAPFISD------MAAAYAW-ADLVICRA- 260 (365)
T ss_dssp HTSCTT-TCCEEEEECCTTT------------HHHHHHHHHHTT--CCCEEESCCSC------HHHHHHH-CSEEEECC-
T ss_pred Hhcccc-cceEEEEecCccc------------cccccceecccc--cccccccchhh------hhhhhcc-ceEEEecC-
Confidence 877543 3456655554333 344555555554 46778887655 5566665 99999754
Q ss_pred CCCCCHHHHHHHHcCCCEEecCCCCc--------cceeecCceEEEeCCC--CHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 002909 677 YEAFGLTVIEAMNCGLPTFATNQGGP--------AEIIIDGVSGFHIDPN--NGDESSNKIADFFEKCKTDAGYWNQMSA 746 (867)
Q Consensus 677 ~EgfGltvlEAMa~GlPVIat~~gG~--------~EiI~dg~~G~lv~p~--d~e~lA~aI~~ll~~~~~dp~~~~~m~~ 746 (867)
-++|+.|+|++|+|+|.....+. ++.+.+.+.|++++.. +++.++++|.+++ .||+.+++|++
T Consensus 261 ---G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll----~d~~~~~~m~~ 333 (365)
T 3s2u_A 261 ---GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVL----MHPETLRSMAD 333 (365)
T ss_dssp ---CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHH----HCTHHHHHHHH
T ss_pred ---CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHH----CCHHHHHHHHH
Confidence 36899999999999998766432 2445666789998755 4788999999988 89999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHH
Q 002909 747 AGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 747 ~ar~~v~~~ysw~~~a~~ll~l 768 (867)
++++.. .....+.+++.++++
T Consensus 334 ~a~~~~-~~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 334 QARSLA-KPEATRTVVDACLEV 354 (365)
T ss_dssp HHHHTC-CTTHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHH
Confidence 998765 445666677776664
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.77 E-value=2e-17 Score=187.64 Aligned_cols=160 Identities=11% Similarity=0.002 Sum_probs=116.6
Q ss_pred CCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEE-EEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 572 RKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNL-VVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 572 ~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~L-vIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
++..+++++|++. .++.+.+.+++..+.+. +++++ +++|++.. .+.+. .++++|+++|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~~~------------~~~l~------~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGNL-PGWHLVLQIGRKVT------------PAELG------ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTTC-TTEEEEEECC---C------------GGGGC------SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhcC-CCeEEEEEeCCCCC------------hHHhc------cCCCCeEEEec
Confidence 3456788999998 55655555555555432 46787 46777654 11111 25689999997
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCCC--CHHHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDPN--NGDESS 724 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p~--d~e~lA 724 (867)
.++ . .+++. +|+||..+- +.+++|||+||+|+|++..++ ..+.+.+.+.|+.++++ |+++++
T Consensus 291 ~~~----~---~~l~~-ad~~v~~~G----~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~ 358 (430)
T 2iyf_A 291 VPQ----L---AILRQ-ADLFVTHAG----AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLR 358 (430)
T ss_dssp CCH----H---HHHTT-CSEEEECCC----HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHH
T ss_pred CCH----H---HHhhc-cCEEEECCC----ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHH
Confidence 654 2 45555 999998642 378999999999999998765 46667777899999877 889999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 725 ~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
++|.+++ .|++.++++++.+++.. +.++++.+++.++++
T Consensus 359 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 397 (430)
T 2iyf_A 359 ETALALV----DDPEVARRLRRIQAEMA-QEGGTRRAADLIEAE 397 (430)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTT
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 9999888 79999999999988766 567999888888774
No 33
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.75 E-value=3.3e-18 Score=191.46 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=124.3
Q ss_pred CCcEEEEEeccCCcCCh-HHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccc
Q 002909 573 KKPIIFSMARLDTVKNI-TGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQ 651 (867)
Q Consensus 573 ~k~iIl~vGRL~~~Kgi-d~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~ 651 (867)
++.+++++|++...|+. ..+++++... +..++++++++|++.. .+.+. ++.++|++.|+.
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~------------~~~l~------~~~~~v~~~~~~ 278 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH------------RALLT------DLPDNARIAESV 278 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG------------GGGCT------TCCTTEEECCSC
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc------------hhhcc------cCCCCEEEeccC
Confidence 44567778998776555 7777777777 6667899999998753 11111 356899999974
Q ss_pred cCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec----CCCCccceeecCceEEEeCC----CCHHHH
Q 002909 652 TDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT----NQGGPAEIIIDGVSGFHIDP----NNGDES 723 (867)
Q Consensus 652 ~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat----~~gG~~EiI~dg~~G~lv~p----~d~e~l 723 (867)
+ ..+++ . .||++|.. +.+.+++|||++|+|+|+. +..+..+.+.+.+.|..+++ .+++++
T Consensus 279 ~----~~~ll---~-~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l 346 (391)
T 3tsa_A 279 P----LNLFL---R-TCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQF 346 (391)
T ss_dssp C----GGGTG---G-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHH
T ss_pred C----HHHHH---h-hCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHH
Confidence 3 34444 4 59999964 4457999999999999994 44556777888889999998 789999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 724 SNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 724 A~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
+++|.+++ .|++.+++|++.+++.. +..+|+.+++.++++
T Consensus 347 ~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 386 (391)
T 3tsa_A 347 TDSIATVL----GDTGFAAAAIKLSDEIT-AMPHPAALVRTLENT 386 (391)
T ss_dssp HHHHHHHH----TCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC
T ss_pred HHHHHHHH----cCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 99998888 89999999998887765 789999999888774
No 34
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.73 E-value=2.9e-17 Score=185.72 Aligned_cols=290 Identities=12% Similarity=0.108 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCCh-HHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHH
Q 002909 393 RFAQDATAKILDLMEGKPDLIIGNYSDG-NLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADL 471 (867)
Q Consensus 393 ~f~~~~~~~i~~~l~~kPDIIh~h~~~~-~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ 471 (867)
.....+.+.+.+. +||+||++.... ++.+.+.+++.|||+++..+++.. + ..+ . .+... ....
T Consensus 98 ~~~~~l~~~l~~~---kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~rs--~---~~~-~------~~~~~-~~r~ 161 (396)
T 3dzc_A 98 KILLGMQQVLSSE---QPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRT--G---NIY-S------PWPEE-GNRK 161 (396)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCC--S---CTT-S------STTHH-HHHH
T ss_pred HHHHHHHHHHHhc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCccc--c---ccc-c------CCcHH-HHHH
Confidence 3444455555554 999999987554 466678889999998754433311 1 000 0 00000 0111
Q ss_pred HHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCC-CCCCCCCCCchHhhhhccCCc
Q 002909 472 IAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPG-ADQSVYFPYTEKQKRLTSFHP 550 (867)
Q Consensus 472 ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnG-VD~~~f~p~~~~~~r~~~~~~ 550 (867)
..-+.+|.+++.|+...+.+. ..|++ +.++.++.|. +|...+.+.......
T Consensus 162 ~~~~~a~~~~~~se~~~~~l~--------------------~~G~~--~~ki~vvGn~~~d~~~~~~~~~~~~~------ 213 (396)
T 3dzc_A 162 LTAALTQYHFAPTDTSRANLL--------------------QENYN--AENIFVTGNTVIDALLAVREKIHTDM------ 213 (396)
T ss_dssp HHHHTCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHHHHCH------
T ss_pred HHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cCcEEEECCcHHHHHHHhhhhcccch------
Confidence 234678999999987655211 23555 6789999884 443221110000000
Q ss_pred chHHhhhcccccccccccccCCCCcE-EEEEeccCC-cCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHH
Q 002909 551 DIEELLYSKEDNSEHIGYLADRKKPI-IFSMARLDT-VKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAE 628 (867)
Q Consensus 551 ~i~~~l~~~~~~~~~lGll~~~~k~i-Il~vGRL~~-~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~ 628 (867)
.. ....++.+|++ ++++++ +++.+|... .|+++.+++|+..+.+.++++++++.++..+ ..
T Consensus 214 ~~------~~~~r~~lg~l-~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~----------~~ 276 (396)
T 3dzc_A 214 DL------QATLESQFPML-DASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNP----------NV 276 (396)
T ss_dssp HH------HHHHHHTCTTC-CTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCH----------HH
T ss_pred hh------HHHHHHHhCcc-CCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCCh----------HH
Confidence 00 01112456622 344454 455556543 4789999999999988788999988643211 11
Q ss_pred HHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec-CCCCccceee
Q 002909 629 IKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT-NQGGPAEIII 707 (867)
Q Consensus 629 ~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat-~~gG~~EiI~ 707 (867)
.+.++++ ++..++|+++++ +...++..+|+. ||++|.+| | |++ +|||+||+|||++ +.++..|++.
T Consensus 277 ~~~l~~~---~~~~~~v~~~~~----lg~~~~~~l~~~-ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~~~~~e~v~ 343 (396)
T 3dzc_A 277 REPVNKL---LKGVSNIVLIEP----QQYLPFVYLMDR-AHIILTDS---G-GIQ-EEAPSLGKPVLVMRETTERPEAVA 343 (396)
T ss_dssp HHHHHHH---TTTCTTEEEECC----CCHHHHHHHHHH-CSEEEESC---S-GGG-TTGGGGTCCEEECCSSCSCHHHHH
T ss_pred HHHHHHH---HcCCCCEEEeCC----CCHHHHHHHHHh-cCEEEECC---c-cHH-HHHHHcCCCEEEccCCCcchHHHH
Confidence 2233322 345578999884 445678888887 99999998 3 444 8999999999999 7888889887
Q ss_pred cCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002909 708 DGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLN 767 (867)
Q Consensus 708 dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ 767 (867)
+| +++++.+ |+++++++|.+++ .|++.+++|++++. .|.....++++.+
T Consensus 344 ~G-~~~lv~~-d~~~l~~ai~~ll----~d~~~~~~m~~~~~-----~~~~~~aa~ri~~ 392 (396)
T 3dzc_A 344 AG-TVKLVGT-NQQQICDALSLLL----TDPQAYQAMSQAHN-----PYGDGKACQRIAD 392 (396)
T ss_dssp HT-SEEECTT-CHHHHHHHHHHHH----HCHHHHHHHHTSCC-----TTCCSCHHHHHHH
T ss_pred cC-ceEEcCC-CHHHHHHHHHHHH----cCHHHHHHHhhccC-----CCcCChHHHHHHH
Confidence 77 5777754 8999999998888 89999999987653 4555555555554
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.73 E-value=1.2e-17 Score=187.75 Aligned_cols=156 Identities=10% Similarity=0.033 Sum_probs=105.0
Q ss_pred CCCcEEEEEeccCCcC----------ChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCC
Q 002909 572 RKKPIIFSMARLDTVK----------NITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQL 641 (867)
Q Consensus 572 ~~k~iIl~vGRL~~~K----------gid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L 641 (867)
+..++++++|++...| .+..+++++..+ ++++++++++.. .+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~------------~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKL------------AQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC--------------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcc------------hhhhc------cC
Confidence 3456788899997655 344555554432 588999888753 12222 35
Q ss_pred CCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEe----cCCCCccceeecCceEEEeCC
Q 002909 642 QGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFA----TNQGGPAEIIIDGVSGFHIDP 717 (867)
Q Consensus 642 ~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIa----t~~gG~~EiI~dg~~G~lv~p 717 (867)
.++|++.|+. +..++ ++ .||+||.. +.+.+++|||+||+|+|+ ++..+..+.+.+.+.|+.+++
T Consensus 283 ~~~v~~~~~~----~~~~l---l~-~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~ 350 (398)
T 4fzr_A 283 PEGVLAAGQF----PLSAI---MP-ACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPW 350 (398)
T ss_dssp CTTEEEESCC----CHHHH---GG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-
T ss_pred CCcEEEeCcC----CHHHH---Hh-hCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCc
Confidence 7899999964 34444 44 49999964 446899999999999999 455577888888999999987
Q ss_pred C--CHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002909 718 N--NGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLN 767 (867)
Q Consensus 718 ~--d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ 767 (867)
. ++++++++|.+++ .|++.+++|++.+++.. +..+|+.+++.+.+
T Consensus 351 ~~~~~~~l~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 351 EQAGVESVLAACARIR----DDSSYVGNARRLAAEMA-TLPTPADIVRLIEQ 397 (398)
T ss_dssp ------CHHHHHHHHH----HCTHHHHHHHHHHHHHT-TSCCHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHH----hCHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Confidence 7 7889999998888 89999999999887765 78899998887653
No 36
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.70 E-value=8.4e-16 Score=172.77 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=117.5
Q ss_pred CCCcEEEEEeccCCc-CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 572 RKKPIIFSMARLDTV-KNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 572 ~~k~iIl~vGRL~~~-Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
+..++++++|++... ++.+.+.+++..+.+. +++++++|++.+. +.+. +++++|++.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~------------~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDI------------SPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCC------------GGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcCh------------hhhc------cCCCcEEEEcc
Confidence 345678889999665 4666666666666553 6899999988541 1111 35789999997
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEe----cCCCCcc--ceeecCceEEEeCCC--CHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFA----TNQGGPA--EIIIDGVSGFHIDPN--NGDE 722 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIa----t~~gG~~--EiI~dg~~G~lv~p~--d~e~ 722 (867)
. +..++ +. .||+||.. +.+.+++|||++|+|+|+ .+..+.. +.+.+.+.|+.+++. +.+.
T Consensus 291 ~----~~~~l---l~-~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~ 358 (398)
T 3oti_A 291 T----PLHTL---LR-TCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADL 358 (398)
T ss_dssp C----CHHHH---HT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHH
T ss_pred C----CHHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHH
Confidence 5 34444 44 49999965 445799999999999999 5668888 999888999999865 4444
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 723 SSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 723 lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
++ +++ .|++.++++++.+++.. +..+|+.+++.++++.
T Consensus 359 l~----~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 359 LR----RLI----GDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp HH----HHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HH----HHH----cCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 44 555 89999999988887755 7899999999988753
No 37
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.69 E-value=1.2e-16 Score=181.19 Aligned_cols=269 Identities=14% Similarity=0.118 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCC-hHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHH
Q 002909 393 RFAQDATAKILDLMEGKPDLIIGNYSD-GNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADL 471 (867)
Q Consensus 393 ~f~~~~~~~i~~~l~~kPDIIh~h~~~-~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~ 471 (867)
.....+.+.+.+. +||+||++... ..+.+.+.+++.|||+++...++.. + +.++ .+... ....
T Consensus 101 ~~~~~l~~~l~~~---kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~aglrs--~---~~~~-------~~p~~-~~r~ 164 (403)
T 3ot5_A 101 RVMNGINEVIAAE---NPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRT--W---NKYS-------PFPEE-MNRQ 164 (403)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCC--S---CTTS-------STTHH-HHHH
T ss_pred HHHHHHHHHHHHc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCccc--c---cccc-------CCcHH-HHHH
Confidence 3344455555554 99999998754 3555678889999998644333211 0 0000 00000 0111
Q ss_pred HHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCC-CCCCCCCCCCchHhhhhccCCc
Q 002909 472 IAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAP-GADQSVYFPYTEKQKRLTSFHP 550 (867)
Q Consensus 472 ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpn-GVD~~~f~p~~~~~~r~~~~~~ 550 (867)
..-..+|.+++.|+...+.+. ..|++ +.++.++.| ++|...+.+......
T Consensus 165 ~~~~~a~~~~~~se~~~~~l~--------------------~~Gi~--~~~i~vvGn~~~D~~~~~~~~~~~~------- 215 (403)
T 3ot5_A 165 LTGVMADIHFSPTKQAKENLL--------------------AEGKD--PATIFVTGNTAIDALKTTVQKDYHH------- 215 (403)
T ss_dssp HHHHHCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHSCTTCCC-------
T ss_pred HHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cccEEEeCCchHHHHHhhhhhhcch-------
Confidence 233558999999987665221 23555 678999988 456432211100000
Q ss_pred chHHhhhcccccccccccccCCCCcEEEEEeccCC-cCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHH
Q 002909 551 DIEELLYSKEDNSEHIGYLADRKKPIIFSMARLDT-VKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEI 629 (867)
Q Consensus 551 ~i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~~-~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~ 629 (867)
+..+.+ .+++.+++++||... .|+++.+++|+..+.+.++++++++.++... ...
T Consensus 216 ----------~~~~~l----~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~----------~~~ 271 (403)
T 3ot5_A 216 ----------PILENL----GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNP----------AVR 271 (403)
T ss_dssp ----------HHHHSC----TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCH----------HHH
T ss_pred ----------HHHHhc----cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCH----------HHH
Confidence 000111 223345666777654 3789999999999988788999988754211 112
Q ss_pred HHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec-CCCCccceeec
Q 002909 630 KKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT-NQGGPAEIIID 708 (867)
Q Consensus 630 ~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat-~~gG~~EiI~d 708 (867)
+.++++ ++..++|+++|+ +...++..+++. ||++|.+| |-..+|||+||+|+|++ +.|+..|.+..
T Consensus 272 ~~l~~~---~~~~~~v~l~~~----l~~~~~~~l~~~-ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~ 338 (403)
T 3ot5_A 272 EKAMAI---LGGHERIHLIEP----LDAIDFHNFLRK-SYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEA 338 (403)
T ss_dssp HHHHHH---HTTCTTEEEECC----CCHHHHHHHHHH-EEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHH
T ss_pred HHHHHH---hCCCCCEEEeCC----CCHHHHHHHHHh-cCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeC
Confidence 222222 345578999994 445688888887 99999887 33348999999999999 67888888866
Q ss_pred CceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002909 709 GVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGR 749 (867)
Q Consensus 709 g~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar 749 (867)
| +|+++.+ |++++++++.+++ .|++.+++|++++.
T Consensus 339 g-~~~lv~~-d~~~l~~ai~~ll----~~~~~~~~m~~~~~ 373 (403)
T 3ot5_A 339 G-TLKLIGT-NKENLIKEALDLL----DNKESHDKMAQAAN 373 (403)
T ss_dssp T-SEEECCS-CHHHHHHHHHHHH----HCHHHHHHHHHSCC
T ss_pred C-cEEEcCC-CHHHHHHHHHHHH----cCHHHHHHHHhhcC
Confidence 6 8999875 9999999999888 89999999987654
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.68 E-value=1.3e-15 Score=170.19 Aligned_cols=161 Identities=14% Similarity=0.087 Sum_probs=113.8
Q ss_pred CCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEE-EeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcc
Q 002909 571 DRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVV-VAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIA 649 (867)
Q Consensus 571 ~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvI-VG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG 649 (867)
++...++++.|+....++ +.+.+++..+.+. ++++++ +|++.. .+.+. .+.++|++.|
T Consensus 229 ~~~~~v~v~~G~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~g~~~~------------~~~~~------~~~~~v~~~~ 287 (402)
T 3ia7_A 229 PDAPVLLVSLGNQFNEHP-EFFRACAQAFADT--PWHVVMAIGGFLD------------PAVLG------PLPPNVEAHQ 287 (402)
T ss_dssp TTCCEEEEECCSCSSCCH-HHHHHHHHHHTTS--SCEEEEECCTTSC------------GGGGC------SCCTTEEEES
T ss_pred CCCCEEEEECCCCCcchH-HHHHHHHHHHhcC--CcEEEEEeCCcCC------------hhhhC------CCCCcEEEec
Confidence 344567788899876652 3333333333332 366666 454433 11111 2568999999
Q ss_pred cccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec-----CCCCccceeecCceEEEeCCC--CHHH
Q 002909 650 AQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT-----NQGGPAEIIIDGVSGFHIDPN--NGDE 722 (867)
Q Consensus 650 ~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat-----~~gG~~EiI~dg~~G~lv~p~--d~e~ 722 (867)
+.++ . .+++. ||++|..+- ..+++|||++|+|+|+. +..+..+.+.+.+.|..++++ ++++
T Consensus 288 ~~~~----~---~ll~~-ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 355 (402)
T 3ia7_A 288 WIPF----H---SVLAH-ARACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPAS 355 (402)
T ss_dssp CCCH----H---HHHTT-EEEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHH
T ss_pred CCCH----H---HHHhh-CCEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHH
Confidence 7543 2 55554 999998742 37899999999999954 445677888888899999876 8899
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 723 SSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 723 lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
++++|.+++ .|++.++++++.+.+.. +..+++..++.+++++
T Consensus 356 l~~~~~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 397 (402)
T 3ia7_A 356 IREAVERLA----ADSAVRERVRRMQRDIL-SSGGPARAADEVEAYL 397 (402)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHH
Confidence 999998888 89999999988877654 7789999999888854
No 39
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.63 E-value=3e-14 Score=159.03 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=113.1
Q ss_pred CCcEEEEEeccCCc-------CChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcE
Q 002909 573 KKPIIFSMARLDTV-------KNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQF 645 (867)
Q Consensus 573 ~k~iIl~vGRL~~~-------Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V 645 (867)
...+++++|++... +.+..+++++..+ ++++++++++.. .+.+. . ++++|
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~------------~~~l~----~--~~~~v 266 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTV------------AEALR----A--EVPQA 266 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHH------------HHHHH----H--HCTTS
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCC------------HHhhC----C--CCCce
Confidence 34578899999875 5667777777543 578888776522 22222 1 35789
Q ss_pred EEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCCC--C
Q 002909 646 RWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDPN--N 719 (867)
Q Consensus 646 ~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p~--d 719 (867)
.+ |+. +..++ +. .+|+||.. +.+.+++|||+||+|+|+...++ .++.+.+.+.|+.+++. +
T Consensus 267 ~~-~~~----~~~~~---l~-~~d~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~ 333 (384)
T 2p6p_A 267 RV-GWT----PLDVV---AP-TCDLLVHH----AGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDS 333 (384)
T ss_dssp EE-ECC----CHHHH---GG-GCSEEEEC----SCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCC
T ss_pred EE-cCC----CHHHH---Hh-hCCEEEeC----CcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCC
Confidence 99 974 34444 44 49999987 33568999999999999997754 66777777789999865 7
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 720 GDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 720 ~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
+++++++|.+++ .|++.++++++.+.+.. ..-.-+..++.+..+
T Consensus 334 ~~~l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 377 (384)
T 2p6p_A 334 TEAIADSCQELQ----AKDTYARRAQDLSREIS-GMPLPATVVTALEQL 377 (384)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 899999998888 79999999988876654 455666666666654
No 40
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.61 E-value=6.2e-14 Score=157.96 Aligned_cols=160 Identities=12% Similarity=0.015 Sum_probs=111.5
Q ss_pred CCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEE-EeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 572 RKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVV-VAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 572 ~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvI-VG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
+.+.++++.|++...++ +.+.+++..+.+ .+ +++++ +|.+.+ .+.+. .++++|++.|+
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al~~-~~-~~~v~~~g~~~~------------~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAFDG-QP-WHVVMTLGGQVD------------PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHHTT-SS-CEEEEECTTTSC------------GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHHhc-CC-cEEEEEeCCCCC------------hHHhc------CCCCcEEEEec
Confidence 44567788898865432 223333333332 23 77777 454433 11111 35689999997
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec----CCCCccceeecCceEEEeCCC--CHHHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT----NQGGPAEIIIDGVSGFHIDPN--NGDESS 724 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat----~~gG~~EiI~dg~~G~lv~p~--d~e~lA 724 (867)
.++ . .++.. ||++|..+- ..+++|||++|+|+|+. +....++.+.+.+.|..++++ ++++++
T Consensus 305 ~~~----~---~ll~~-ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~ 372 (415)
T 3rsc_A 305 VPH----V---KVLEQ-ATVCVTHGG----MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLL 372 (415)
T ss_dssp CCH----H---HHHHH-EEEEEESCC----HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHH
T ss_pred CCH----H---HHHhh-CCEEEECCc----HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHH
Confidence 543 3 44454 999998742 36899999999999994 444567777777889999876 789999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002909 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMG 769 (867)
Q Consensus 725 ~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly 769 (867)
++|.+++ .|++.++++++.+.+.. +..+++..++.+++++
T Consensus 373 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 373 AAVGAVA----ADPALLARVEAMRGHVR-RAGGAARAADAVEAYL 412 (415)
T ss_dssp HHHHHHH----TCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Confidence 9998888 89999999988777654 7789999888888754
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.52 E-value=7.4e-13 Score=151.10 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=115.0
Q ss_pred CcEEEEEeccCC-----cCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEc
Q 002909 574 KPIIFSMARLDT-----VKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWI 648 (867)
Q Consensus 574 k~iIl~vGRL~~-----~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~fl 648 (867)
..+++++|++.. .|.+..+++++..+ ++++++++++... +.+. +++++|++.
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~------------~~l~------~~~~~v~~~ 324 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQL------------EGVA------NIPDNVRTV 324 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTT------------SSCS------SCCSSEEEC
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcch------------hhhc------cCCCCEEEe
Confidence 457888999875 48888899988654 5788888776431 1111 356899999
Q ss_pred ccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCCC--CHHH
Q 002909 649 AAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDPN--NGDE 722 (867)
Q Consensus 649 G~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p~--d~e~ 722 (867)
|+.+ ..++ +. .||+||.. +.+.+++|||++|+|+|+...++ .++.+.+.+.|+.+++. ++++
T Consensus 325 ~~~~----~~~l---l~-~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 392 (441)
T 2yjn_A 325 GFVP----MHAL---LP-TCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQ 392 (441)
T ss_dssp CSCC----HHHH---GG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHH
T ss_pred cCCC----HHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHH
Confidence 9744 3444 44 59999985 44579999999999999997744 56667777899999876 7899
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 723 SSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 723 lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
++++|.+++ .|++.++++++.+.+.. ...+++.+++.++++
T Consensus 393 l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 433 (441)
T 2yjn_A 393 LRESVKRVL----DDPAHRAGAARMRDDML-AEPSPAEVVGICEEL 433 (441)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 999998888 89999999988887654 678999998888875
No 42
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.49 E-value=6e-14 Score=167.04 Aligned_cols=330 Identities=15% Similarity=0.030 Sum_probs=209.4
Q ss_pred CCeEEEECCCChHHHHH-HHHHh--------------cCCcEEEEEcCCccccc---ccc-------h-------hhhhh
Q 002909 409 KPDLIIGNYSDGNLVAS-LMASK--------------LGITQATIAHALEKSKY---EDS-------D-------AKWKE 456 (867)
Q Consensus 409 kPDIIh~h~~~~~l~a~-lla~~--------------~gip~V~t~H~l~~~~~---~~s-------~-------~~~~~ 456 (867)
+||+||+|.+.++++.. ++... .+.++++|.|++.+... +.. . +.+..
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHHH
Confidence 69999999998877655 33222 24678999999766442 110 0 00000
Q ss_pred cC-------------c-cccchhhhhHHHHHHhcCCEEEecCHHHHhhcCC-CCCccccccccccccceeeeccCCCCCC
Q 002909 457 LD-------------P-KYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKD-RPGQYESHTAFTMPGLCRVVSGINVFDP 521 (867)
Q Consensus 457 ~~-------------~-~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~-~~gqY~s~~~~~lp~l~~v~~GI~~~~~ 521 (867)
+. . ......++.--..++..++.|.+||+...+.++. .++ ++++ .++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~-----------~~~~------~~p~ 431 (796)
T 2c4m_A 369 RLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLA-----------DWYA------LWPE 431 (796)
T ss_dssp HHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTH-----------HHHH------HCGG
T ss_pred HHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhh-----------hHHH------cCcc
Confidence 00 0 0000012222345889999999999977665552 222 1121 1266
Q ss_pred cEEEeCCCCCCCCC----CCCchHhh-----------------hhccCCcc-------hHHhhhcccc----cccccccc
Q 002909 522 KFNIAAPGADQSVY----FPYTEKQK-----------------RLTSFHPD-------IEELLYSKED----NSEHIGYL 569 (867)
Q Consensus 522 ki~VIpnGVD~~~f----~p~~~~~~-----------------r~~~~~~~-------i~~~l~~~~~----~~~~lGll 569 (867)
++.-|-||||...+ .|..+.-. .+..+.+. .+.+.-++.. .+++.|+.
T Consensus 432 kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~ 511 (796)
T 2c4m_A 432 KFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIE 511 (796)
T ss_dssp GEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999888 44422110 01111111 1222333434 25677887
Q ss_pred cCCCCcEEEEEeccCCcCChHH-HHHHHHHhHc--cC-----CCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHH----
Q 002909 570 ADRKKPIIFSMARLDTVKNITG-LTEWYGKNKR--LR-----NMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIE---- 637 (867)
Q Consensus 570 ~~~~k~iIl~vGRL~~~Kgid~-LieA~~~l~~--~~-----~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~---- 637 (867)
.+++.++++++.|+..+||++. ++..+.++.+ .. .++++|+.|.+.+ .+......++.+..+++
T Consensus 512 vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~ 587 (796)
T 2c4m_A 512 IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAP----GYVRAKAIIKLINSIADLVNN 587 (796)
T ss_dssp CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCH----hHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999 8888777653 22 3588998888865 24444455555666665
Q ss_pred HcCCCC--cEEEcccccCCCChHHHHHHHHccCcEEEEcCC--CCCCCHHHHHHHHcCCCEEecCCCCccceeec--Cce
Q 002909 638 KYQLQG--QFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL--YEAFGLTVIEAMNCGLPTFATNQGGPAEIIID--GVS 711 (867)
Q Consensus 638 ~~~L~~--~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~--~EgfGltvlEAMa~GlPVIat~~gG~~EiI~d--g~~ 711 (867)
.-..++ +|.|+.- . +..+.+.+..+||++.+||. +|++|+.-+=||..|.++|+|-.|...|+.++ .+|
T Consensus 588 dp~~~~~lKVvFl~n----Y-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~N 662 (796)
T 2c4m_A 588 DPEVSPLLKVVFVEN----Y-NVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEEN 662 (796)
T ss_dssp CTTTTTTEEEEEETT----C-CHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGG
T ss_pred ccccCCceEEEEECC----C-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCc
Confidence 113456 7887752 1 34677777777999999999 99999999999999999999998999888754 469
Q ss_pred EEEeCC--CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002909 712 GFHIDP--NNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGS 770 (867)
Q Consensus 712 G~lv~p--~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly~ 770 (867)
||+|.. .++.++-.. .+..+-...|| .++++-+++.. ..|||... ..+..+|+
T Consensus 663 gF~FG~~~~ev~~l~~~-y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~-~~y~~Ly~ 717 (796)
T 2c4m_A 663 AYIFGARVEELPALRES-YKPYELYETVP-GLKRALDALDN---GTLNDNNS-GLFYDLKH 717 (796)
T ss_dssp SEEESCCTTTHHHHHHT-CCHHHHHHHST-THHHHHHTTTS---SSSCCTTC-CHHHHHHH
T ss_pred EEEecCchhhHHHHHHh-hChHHHhhcCH-HHHHHHHHHHc---CCCCCCCH-HHHHHHHH
Confidence 999976 666666554 33333233555 35555555543 57888654 44555444
No 43
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.46 E-value=2.8e-13 Score=161.32 Aligned_cols=331 Identities=13% Similarity=-0.001 Sum_probs=209.7
Q ss_pred CCeEEEECCCChHHHHH-HHHHh--------------cCCcEEEEEcCCccccc---ccc-------hh-------hhh-
Q 002909 409 KPDLIIGNYSDGNLVAS-LMASK--------------LGITQATIAHALEKSKY---EDS-------DA-------KWK- 455 (867)
Q Consensus 409 kPDIIh~h~~~~~l~a~-lla~~--------------~gip~V~t~H~l~~~~~---~~s-------~~-------~~~- 455 (867)
+||+||+|.+.++++.. ++... .+.++++|.|++.+... +.. .. .+.
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999998877655 33222 36789999999866542 110 00 000
Q ss_pred --h-----------cCc-cccchhhhhHHHHHHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCC
Q 002909 456 --E-----------LDP-KYHFSCQFTADLIAMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDP 521 (867)
Q Consensus 456 --~-----------~~~-~y~f~~~~~~e~ial~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ 521 (867)
. +.. ......++.--..++..++.|.+||+...+.++.... +++++ .++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f----------~~~~~------~~p~ 442 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLF----------PEYHQ------LWPN 442 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTS----------HHHHH------HCGG
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHHh----------hHHHH------hCcc
Confidence 0 000 0000001222345889999999999976665543211 01121 2256
Q ss_pred cEEEeCCCCCCCCC----CCCchHhh-------------hhccC---Ccc-------hHHhhhcccc----ccccccccc
Q 002909 522 KFNIAAPGADQSVY----FPYTEKQK-------------RLTSF---HPD-------IEELLYSKED----NSEHIGYLA 570 (867)
Q Consensus 522 ki~VIpnGVD~~~f----~p~~~~~~-------------r~~~~---~~~-------i~~~l~~~~~----~~~~lGll~ 570 (867)
++.-|-||||...+ .|..+.-. .+.++ .+. .+.+.-++.. .+++.|+..
T Consensus 443 k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~v 522 (796)
T 1l5w_A 443 KFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522 (796)
T ss_dssp GEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999998776 34322110 01111 111 1122333333 256678887
Q ss_pred CCCCcEEEEEeccCCcCChHH-HHHHHHHhHcc--C-----CCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHH----H
Q 002909 571 DRKKPIIFSMARLDTVKNITG-LTEWYGKNKRL--R-----NMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIE----K 638 (867)
Q Consensus 571 ~~~k~iIl~vGRL~~~Kgid~-LieA~~~l~~~--~-----~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~----~ 638 (867)
+++.++++++.|+..+||++. ++..+.++.+. . .++++|+.|.+.+ .+......++.+..+++ .
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~D 598 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAP----GYYLAKNIIFAINKVADVINND 598 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCCh----hHHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999999 78877766441 2 3588988888865 24444455555666665 1
Q ss_pred cCCCC--cEEEcccccCCCChHHHHHHHHccCcEEEEcCC--CCCCCHHHHHHHHcCCCEEecCCCCccceeec--CceE
Q 002909 639 YQLQG--QFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL--YEAFGLTVIEAMNCGLPTFATNQGGPAEIIID--GVSG 712 (867)
Q Consensus 639 ~~L~~--~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~--~EgfGltvlEAMa~GlPVIat~~gG~~EiI~d--g~~G 712 (867)
-..++ +|.|+.- . +..+.+.+..+||++.+||. +|++|+.-+=||..|.++|+|-.|...|+.++ .+||
T Consensus 599 p~~~~~lKVvfl~n----Y-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~Ng 673 (796)
T 1l5w_A 599 PLVGDKLKVVFLPD----Y-CVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENI 673 (796)
T ss_dssp TTTGGGEEEEECSS----C-CHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGS
T ss_pred cccCCceEEEEECC----C-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcE
Confidence 13456 7888762 2 34677777777999999999 99999999999999999999999999988754 4699
Q ss_pred EEeCCCCHHHHHHHHH---HHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002909 713 FHIDPNNGDESSNKIA---DFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNMGS 770 (867)
Q Consensus 713 ~lv~p~d~e~lA~aI~---~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ly~ 770 (867)
|+|.. +++++.+.-. +..+-...+| .++++-+++.. ..|||... ..+..+|+
T Consensus 674 F~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~-~~y~~Ly~ 728 (796)
T 1l5w_A 674 FIFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELES---GKYSDGDK-HAFDQMLH 728 (796)
T ss_dssp EECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHH---TTTTTTCT-TTTHHHHH
T ss_pred EEecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHc---CCCCCCcH-HHHHHHHH
Confidence 99976 7777663221 1222222566 46666666654 67999763 55666554
No 44
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.45 E-value=1.6e-13 Score=154.51 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCChHHHHHHHHHhcCCcEEEEEcCCcccccccchhhhhhcCccccchhhhhHHHH
Q 002909 393 RFAQDATAKILDLMEGKPDLIIGNYSDGNLVASLMASKLGITQATIAHALEKSKYEDSDAKWKELDPKYHFSCQFTADLI 472 (867)
Q Consensus 393 ~f~~~~~~~i~~~l~~kPDIIh~h~~~~~l~a~lla~~~gip~V~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~i 472 (867)
.....+.+.+.+. +||+|+++.......+.+.|++.|||+++...++.... .. +... .....
T Consensus 81 ~~~~~l~~~l~~~---kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eaglrs~~-----~~---------~pee-~nR~~ 142 (385)
T 4hwg_A 81 LVIEKVDEVLEKE---KPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGNRCFD-----QR---------VPEE-INRKI 142 (385)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCCCCSC-----TT---------STHH-HHHHH
T ss_pred HHHHHHHHHHHhc---CCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCCcccc-----cc---------CcHH-HHHHH
Confidence 3344445555544 99999998644333337788899999764444331100 00 0000 01112
Q ss_pred HHhcCCEEEecCHHHHhhcCCCCCccccccccccccceeeeccCCCCCCcEEEeCCC-CCCCCCCCCchHhhhhccCCcc
Q 002909 473 AMNQTDFIITSTYQEIAGSKDRPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPG-ADQSVYFPYTEKQKRLTSFHPD 551 (867)
Q Consensus 473 al~~aD~IIa~S~~~~~~~k~~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnG-VD~~~f~p~~~~~~r~~~~~~~ 551 (867)
.-..+|.+++.|+...+.+ ...|++ ++++.++.|. +|...+.. ..
T Consensus 143 ~~~~a~~~~~~te~~~~~l--------------------~~~G~~--~~~I~vtGnp~~D~~~~~~--~~---------- 188 (385)
T 4hwg_A 143 IDHISDVNITLTEHARRYL--------------------IAEGLP--AELTFKSGSHMPEVLDRFM--PK---------- 188 (385)
T ss_dssp HHHHCSEEEESSHHHHHHH--------------------HHTTCC--GGGEEECCCSHHHHHHHHH--HH----------
T ss_pred HHhhhceeecCCHHHHHHH--------------------HHcCCC--cCcEEEECCchHHHHHHhh--hh----------
Confidence 3356899999998765521 123555 6789888873 34211100 00
Q ss_pred hHHhhhcccccccccccccCCCCcEEEEEeccC---CcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHH
Q 002909 552 IEELLYSKEDNSEHIGYLADRKKPIIFSMARLD---TVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAE 628 (867)
Q Consensus 552 i~~~l~~~~~~~~~lGll~~~~k~iIl~vGRL~---~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~ 628 (867)
.+..+.++.+|+ ++++.++++.+|.. ..|++..+++|+..+.+.. ++.+++..+ +
T Consensus 189 -----~~~~~~~~~lgl--~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~-p------------- 246 (385)
T 4hwg_A 189 -----ILKSDILDKLSL--TPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTH-P------------- 246 (385)
T ss_dssp -----HHHCCHHHHTTC--CTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEEC-H-------------
T ss_pred -----cchhHHHHHcCC--CcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECC-h-------------
Confidence 011222356777 44555666677743 4478999999999987644 677776543 1
Q ss_pred HHHHHHHHHHc-C---CCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC-cc
Q 002909 629 IKKMHTLIEKY-Q---LQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG-PA 703 (867)
Q Consensus 629 ~~~l~~li~~~-~---L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG-~~ 703 (867)
.+++.++++ + ..++|.+++. ....++..+++. ||+++.+| |....||+++|+|||+..... ..
T Consensus 247 --~~~~~l~~~~~~~~~~~~v~l~~~----lg~~~~~~l~~~-adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~ 314 (385)
T 4hwg_A 247 --RTKKRLEDLEGFKELGDKIRFLPA----FSFTDYVKLQMN-AFCILSDS-----GTITEEASILNLPALNIREAHERP 314 (385)
T ss_dssp --HHHHHHHTSGGGGGTGGGEEECCC----CCHHHHHHHHHH-CSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCT
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEcC----CCHHHHHHHHHh-CcEEEECC-----ccHHHHHHHcCCCEEEcCCCccch
Confidence 134444544 3 2468999873 445677888887 99999776 556899999999999986543 56
Q ss_pred ceeecCceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002909 704 EIIIDGVSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLN 767 (867)
Q Consensus 704 EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~ 767 (867)
|.+..| ++.++. .|++++++++..++ .|+..+++|++++..++....+-+++++.+.+
T Consensus 315 e~v~~G-~~~lv~-~d~~~i~~ai~~ll----~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~ 372 (385)
T 4hwg_A 315 EGMDAG-TLIMSG-FKAERVLQAVKTIT----EEHDNNKRTQGLVPDYNEAGLVSKKILRIVLS 372 (385)
T ss_dssp HHHHHT-CCEECC-SSHHHHHHHHHHHH----TTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHH
T ss_pred hhhhcC-ceEEcC-CCHHHHHHHHHHHH----hChHHHHHhhccCCCCCCCChHHHHHHHHHHH
Confidence 777666 677775 48999999998888 78777666655443320122333444444444
No 45
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.45 E-value=1.1e-12 Score=156.93 Aligned_cols=258 Identities=11% Similarity=-0.003 Sum_probs=172.0
Q ss_pred HHHHHhcCCEEEecCHHHHhhcCC-CCCccccccccccccceeeeccCCCCCCcEEEeCCCCCCCCC----CCCchHhhh
Q 002909 470 DLIAMNQTDFIITSTYQEIAGSKD-RPGQYESHTAFTMPGLCRVVSGINVFDPKFNIAAPGADQSVY----FPYTEKQKR 544 (867)
Q Consensus 470 e~ial~~aD~IIa~S~~~~~~~k~-~~gqY~s~~~~~lp~l~~v~~GI~~~~~ki~VIpnGVD~~~f----~p~~~~~~r 544 (867)
-..++..++.|.+||+...+.++. .++. ++. .++.++.-|-||||...+ .|..+....
T Consensus 431 a~lai~~S~~VNgVS~lH~e~ik~~~f~~-----------~~~------~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~ 493 (824)
T 2gj4_A 431 AHLCIAGSHAVNGVARIHSEILKKTIFKD-----------FYE------LEPHKFQNKTNGITPRRWLVLCNPGLAEIIA 493 (824)
T ss_dssp HHHHHHTCSCEEESSHHHHHHHHHTTTHH-----------HHH------HCGGGEEECCCCBCTCCCCCCTCHHHHHHHH
T ss_pred HHHHHHhcCceeeEcHHHHHHHhhHHhHH-----------HHH------cChhhcccccCCcChhhhcccCCHhHHHHHH
Confidence 345899999999999977666542 2221 111 125689999999999888 454321110
Q ss_pred -------------hcc---CC--cch-----HHhhhcccc----cccccccccCCCCcEEEEEeccCCcCChHHH-HHHH
Q 002909 545 -------------LTS---FH--PDI-----EELLYSKED----NSEHIGYLADRKKPIIFSMARLDTVKNITGL-TEWY 596 (867)
Q Consensus 545 -------------~~~---~~--~~i-----~~~l~~~~~----~~~~lGll~~~~k~iIl~vGRL~~~Kgid~L-ieA~ 596 (867)
+.+ +. +.+ +.+..++.. .+++.|+..+++.++++++.|+..+|+++.+ +..+
T Consensus 494 ~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i 573 (824)
T 2gj4_A 494 ERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVI 573 (824)
T ss_dssp HHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHH
T ss_pred HhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHH
Confidence 111 11 111 112223333 4456888778899999999999999999997 7777
Q ss_pred HHhHc--cCC-----CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcC----CCC--cEEEcccccCCCChHHHHHH
Q 002909 597 GKNKR--LRN-----MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQ----LQG--QFRWIAAQTDRYRNGELYRC 663 (867)
Q Consensus 597 ~~l~~--~~~-----~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~----L~~--~V~flG~~~d~v~~~el~~~ 663 (867)
.++.+ ..+ ++++|+.|.+.+ .+...+..++.+..+++.++ .++ +|.|+.- . +..+.+.
T Consensus 574 ~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~n----Y-dvslA~~ 644 (824)
T 2gj4_A 574 TLYNRIKKEPNKFVVPRTVMIGGKAAP----GYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLEN----Y-RVSLAEK 644 (824)
T ss_dssp HHHHHHHHCTTSCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETT----C-CHHHHHH
T ss_pred HHHHHHHhCCCCCCCCEEEEEEEeCCH----hHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECC----C-CHHHHHH
Confidence 76642 222 578988888865 34455566666777777653 356 7887752 1 3467777
Q ss_pred HHccCcEEEEcCC--CCCCCHHHHHHHHcCCCEEecCCCCccceee--cCceEEEeCCCCHHHHHHHHH----HHHHHhh
Q 002909 664 IADTKGAFVQPAL--YEAFGLTVIEAMNCGLPTFATNQGGPAEIII--DGVSGFHIDPNNGDESSNKIA----DFFEKCK 735 (867)
Q Consensus 664 la~~aDvfV~PS~--~EgfGltvlEAMa~GlPVIat~~gG~~EiI~--dg~~G~lv~p~d~e~lA~aI~----~ll~~~~ 735 (867)
+..+||++.+||+ +|++|++-+=||..|.++|+|--|...|+.+ .++|||+|... .+++ ..+. +..+-..
T Consensus 645 I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~-~~ev-~~l~~~~~~a~~~Y~ 722 (824)
T 2gj4_A 645 VIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMR-VEDV-DRLDQRGYNAQEYYD 722 (824)
T ss_dssp HGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCC-HHHH-HHHHHHCCCHHHHHH
T ss_pred HhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCc-HHHH-HHHHHcCCCHHHHhc
Confidence 7777999999999 9999999999999999999998888888864 46789999865 6666 4441 1111112
Q ss_pred cCHHHHHHHHHHHHHHHHHhCCHH
Q 002909 736 TDAGYWNQMSAAGRQRIYECYTWK 759 (867)
Q Consensus 736 ~dp~~~~~m~~~ar~~v~~~ysw~ 759 (867)
.++ .++++-+++. ...|+|.
T Consensus 723 ~~~-~l~~v~d~i~---~g~fs~~ 742 (824)
T 2gj4_A 723 RIP-ELRQIIEQLS---SGFFSPK 742 (824)
T ss_dssp HCH-HHHHHHHHHH---HTTTCTT
T ss_pred CCH-HHHHHHHHHH---hCCCCCC
Confidence 344 3444444443 3578874
No 46
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.40 E-value=1.4e-11 Score=139.18 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=106.6
Q ss_pred CCCcEEEEEeccC-CcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 572 RKKPIIFSMARLD-TVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 572 ~~k~iIl~vGRL~-~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
..+++++++|++. ..+.+..+++++..+ +++++++++.... +..++.++|++.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~-------------------~~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGL-------------------GRIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTC-------------------CCSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCccc-------------------ccccCCCCEEEecC
Confidence 3466888889988 666677778877754 4677777665431 01234689999996
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCc----cceeecCceEEEeCCC--CHHHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGP----AEIIIDGVSGFHIDPN--NGDESS 724 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~----~EiI~dg~~G~lv~p~--d~e~lA 724 (867)
. +..+++. .+|++|..+ -..++.|||++|+|+|+...++- .+.+++.+.|..+++. +.++++
T Consensus 276 ~----~~~~ll~----~~d~~v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 343 (404)
T 3h4t_A 276 V----NHQVLFG----RVAAVVHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLS 343 (404)
T ss_dssp C----CHHHHGG----GSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred C----CHHHHHh----hCcEEEECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHH
Confidence 4 3455553 599999763 23689999999999999866543 3445566688888754 688899
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 725 ~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
++|.+++ . +++++++.+.+.... + -.++..++.++++
T Consensus 344 ~ai~~ll----~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~ 380 (404)
T 3h4t_A 344 AALATAL----T-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEA 380 (404)
T ss_dssp HHHHHHT----S-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHH
T ss_pred HHHHHHh----C-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHH
Confidence 9998877 7 888877776665433 2 4566666666553
No 47
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.39 E-value=7.6e-11 Score=133.38 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=107.4
Q ss_pred CCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEE-EEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 572 RKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLV-VVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 572 ~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~Lv-IVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
+...++++.|++. .+..+.+.+++..+.+ .+++++ ++|.+.+ .+.+ + .++++|++.++
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~------------~~~~----~--~~~~~v~~~~~ 312 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVD------------PADL----G--EVPPNVEVHQW 312 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSC------------GGGG----C--SCCTTEEEESS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCC------------hHHh----c--cCCCCeEEecC
Confidence 3456778889987 3333444444444433 457775 4565543 0111 1 25689999997
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCCC--CHHHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDPN--NGDESS 724 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p~--d~e~lA 724 (867)
.++ . .+++. +|+||.-+ -+.+++|||++|+|+|+....+ .++.+.+.+.|+.+++. ++++++
T Consensus 313 ~~~----~---~~l~~-~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 380 (424)
T 2iya_A 313 VPQ----L---DILTK-ASAFITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLR 380 (424)
T ss_dssp CCH----H---HHHTT-CSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHH
T ss_pred CCH----H---HHHhh-CCEEEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHH
Confidence 543 2 45555 99999752 2378999999999999997643 45556677789998765 789999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 725 NKIADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 725 ~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
++|.+++ .|++.++++.+.+.+.. +....+..++.++++
T Consensus 381 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 419 (424)
T 2iya_A 381 EAVLAVA----SDPGVAERLAAVRQEIR-EAGGARAAADILEGI 419 (424)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 9998888 89988888877766543 456666666666664
No 48
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.29 E-value=4e-11 Score=140.38 Aligned_cols=186 Identities=9% Similarity=-0.074 Sum_probs=129.2
Q ss_pred cccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEE--EEeCCCCCCCCCChHHHHHHHHHHHHHHHcCC
Q 002909 564 EHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLV--VVAGFFDPSKSHDREEIAEIKKMHTLIEKYQL 641 (867)
Q Consensus 564 ~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~Lv--IVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L 641 (867)
..+|++.+.+..++++.+++ .|..+.+++++.++.+..|+..|+ ++|++.. . ...+.+.+.+.|+
T Consensus 431 ~~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g------~-----~~~~~~~~~~~GI 497 (631)
T 3q3e_A 431 VDYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNG------I-----THPYVERFIKSYL 497 (631)
T ss_dssp CCCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCG------G-----GHHHHHHHHHHHH
T ss_pred ccccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCch------h-----hHHHHHHHHHcCC
Confidence 34566322346777888875 688999999999999888887764 3564321 0 1222233456678
Q ss_pred CCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCccceee------cCceEE-E
Q 002909 642 QGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIII------DGVSGF-H 714 (867)
Q Consensus 642 ~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI~------dg~~G~-l 714 (867)
.++|.|.| ..+..+....+.. +|+|+-|+.+.| |+|.+|||+||+|||+..-++...-+. -|..++ +
T Consensus 498 ~~Rv~F~g----~~p~~e~la~y~~-aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LI 571 (631)
T 3q3e_A 498 GDSATAHP----HSPYHQYLRILHN-CDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLI 571 (631)
T ss_dssp GGGEEEEC----CCCHHHHHHHHHT-CSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGE
T ss_pred CccEEEcC----CCCHHHHHHHHhc-CcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCccee
Confidence 78999999 4556788888887 999999998755 999999999999999965544443331 233343 3
Q ss_pred eCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHh-HHHHHH
Q 002909 715 IDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYE--CYTWKIYANKVLNMGS-IYGFWR 776 (867)
Q Consensus 715 v~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~--~ysw~~~a~~ll~ly~-~~~f~~ 776 (867)
.+ +.+++.++...+. .|++.+.+++++.+++... .|+ ..++++.++|+ ++.-|+
T Consensus 572 A~--d~eeYv~~Av~La----~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~w~ 628 (631)
T 3q3e_A 572 AN--TVDEYVERAVRLA----ENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNAFL 628 (631)
T ss_dssp ES--SHHHHHHHHHHHH----HCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHHHH
Confidence 33 7899999998887 8999999999999888644 344 34455555433 333443
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.28 E-value=2.6e-11 Score=135.43 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=103.3
Q ss_pred CCCcEEEEEeccCCcCC-hHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 572 RKKPIIFSMARLDTVKN-ITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 572 ~~k~iIl~vGRL~~~Kg-id~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
+...++++.|++...++ .+.+.+++..+.+ .+.++++++++.+.. ....++++|.+.++
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~------------------~~~~~~~~v~~~~~ 295 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLA------------------LLGELPANVRVVEW 295 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCC------------------CCCCCCTTEEEECC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccc------------------ccccCCCCEEEEee
Confidence 34456778888876543 4555555555544 356777766654310 11246789999996
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCCCCHHHHHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDPNNGDESSNK 726 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p~d~e~lA~a 726 (867)
. +..+++ . .+|+||.- +-..+++|||++|+|+|+....+ .++.+++.+.|..++. .+..+++
T Consensus 296 ~----p~~~lL---~-~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~--~~~~~~a 361 (400)
T 4amg_A 296 I----PLGALL---E-TCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEA--GSLGAEQ 361 (400)
T ss_dssp C----CHHHHH---T-TCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCT--TTCSHHH
T ss_pred c----CHHHHh---h-hhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCC--CCchHHH
Confidence 4 445554 4 49999864 34568999999999999965544 4556666677888874 4456788
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002909 727 IADFFEKCKTDAGYWNQMSAAGRQRIYECYTWKIYANKVLNM 768 (867)
Q Consensus 727 I~~ll~~~~~dp~~~~~m~~~ar~~v~~~ysw~~~a~~ll~l 768 (867)
|.+++ +|++++++..+-+.+ +...-+-...++.++++
T Consensus 362 l~~lL----~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 362 CRRLL----DDAGLREAALRVRQE-MSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHHH----HCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHHH
T ss_pred HHHHH----cCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 88887 899988776655443 44555777777777765
No 50
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.26 E-value=2.1e-10 Score=129.63 Aligned_cols=136 Identities=13% Similarity=0.002 Sum_probs=94.3
Q ss_pred CCcEEEEEecc-CCcCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 573 KKPIIFSMARL-DTVKNITGLTEWYGKNKRLRNMVNLVVV-AGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 573 ~k~iIl~vGRL-~~~Kgid~LieA~~~l~~~~~~v~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
...++++.|++ ...+.++.+++++..+ +.+++++ |.+.. + ...++++|++.|+
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-------------~-------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH-----GRRVILSRGWADL-------------V-------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT-----TCCEEECTTCTTC-------------C-------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC-----CCeEEEEeCCCcc-------------c-------ccCCCCCEEEeCc
Confidence 45688899999 5888888888888765 2456665 54432 0 0134578999997
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCCC--CHHHHH
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDPN--NGDESS 724 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p~--d~e~lA 724 (867)
.+ ..++ +. .||+||..+ -..+++|||++|+|+|+....+ .++.+++.+.|..+++. +.++++
T Consensus 293 ~~----~~~~---l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 360 (415)
T 1iir_A 293 VN----HQVL---FG-RVAAVIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLS 360 (415)
T ss_dssp CC----HHHH---GG-GSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred CC----hHHH---Hh-hCCEEEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHH
Confidence 54 3454 34 599999853 2369999999999999987654 55666677789998754 677777
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH
Q 002909 725 NKIADFFEKCKTDAGYWNQMSAAGRQ 750 (867)
Q Consensus 725 ~aI~~ll~~~~~dp~~~~~m~~~ar~ 750 (867)
++|. ++ .|++.++++.+.+.+
T Consensus 361 ~~i~----~l-~~~~~~~~~~~~~~~ 381 (415)
T 1iir_A 361 AALA----TA-LTPETHARATAVAGT 381 (415)
T ss_dssp HHHH----HH-TSHHHHHHHHHHHHH
T ss_pred HHHH----HH-cCHHHHHHHHHHHHH
Confidence 7774 44 678887777665544
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.19 E-value=3.2e-10 Score=128.09 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=93.4
Q ss_pred CCcEEEEEeccC---CcCChHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEc
Q 002909 573 KKPIIFSMARLD---TVKNITGLTEWYGKNKRLRNMVNLVVV-AGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWI 648 (867)
Q Consensus 573 ~k~iIl~vGRL~---~~Kgid~LieA~~~l~~~~~~v~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~fl 648 (867)
+..++++.|++. ..+.+..+++++..+ +++++++ |.+.. + . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-------------~-~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTEL-------------V-L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTC-------------C-C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCccc-------------c-c------cCCCCCEEEe
Confidence 456788899985 466777778887654 3567665 54422 0 0 1356789999
Q ss_pred ccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecCceEEEeCC--CCHHH
Q 002909 649 AAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDGVSGFHIDP--NNGDE 722 (867)
Q Consensus 649 G~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg~~G~lv~p--~d~e~ 722 (867)
++. +..+++ . .||+||.- +-+.+++|||++|+|+|+....+ .++.+++.+.|..++. .+.++
T Consensus 292 ~~~----~~~~ll---~-~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 359 (416)
T 1rrv_A 292 DEV----NFQALF---R-RVAAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFES 359 (416)
T ss_dssp SSC----CHHHHG---G-GSSEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHH
T ss_pred ccC----ChHHHh---c-cCCEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHH
Confidence 964 345554 4 59999984 33469999999999999976643 4555666778998865 36677
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 002909 723 SSNKIADFFEKCKTDAGYWNQMSAAGRQ 750 (867)
Q Consensus 723 lA~aI~~ll~~~~~dp~~~~~m~~~ar~ 750 (867)
++++| +++ .|++.++++++.+.+
T Consensus 360 l~~~i----~~l-~~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 360 LSAAL----TTV-LAPETRARAEAVAGM 382 (416)
T ss_dssp HHHHH----HHH-TSHHHHHHHHHHTTT
T ss_pred HHHHH----HHh-hCHHHHHHHHHHHHH
Confidence 77777 445 688888777665543
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=107.02 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=99.7
Q ss_pred CCcEEEEEeccC---CcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcc
Q 002909 573 KKPIIFSMARLD---TVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIA 649 (867)
Q Consensus 573 ~k~iIl~vGRL~---~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG 649 (867)
...+++++|++. +.|++..+++++..+ +.++++++++... + .++++|++.|
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~------------~---------~~~~~v~~~~ 74 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKP------------D---------TLGLNTRLYK 74 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCC------------T---------TCCTTEEEES
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCc------------c---------cCCCcEEEec
Confidence 456888999985 667778888887543 3688888876541 0 3467999999
Q ss_pred cccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCC----CccceeecCceEEEeCCC--CHHHH
Q 002909 650 AQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQG----GPAEIIIDGVSGFHIDPN--NGDES 723 (867)
Q Consensus 650 ~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~g----G~~EiI~dg~~G~lv~p~--d~e~l 723 (867)
+.+ ..+++.+ . .||++|.. +.+.+++|||++|+|+|+.... +.++.+.+.+.|+.+++. +++++
T Consensus 75 ~~~----~~~~l~~-~-~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l 144 (170)
T 2o6l_A 75 WIP----QNDLLGH-P-KTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDL 144 (170)
T ss_dssp SCC----HHHHHTS-T-TEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHH
T ss_pred CCC----HHHHhcC-C-CcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHH
Confidence 754 4455533 4 49999985 3468999999999999999774 346677788899999877 78999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHH
Q 002909 724 SNKIADFFEKCKTDAGYWNQMS 745 (867)
Q Consensus 724 A~aI~~ll~~~~~dp~~~~~m~ 745 (867)
+++|.+++ .|++.++++.
T Consensus 145 ~~~i~~ll----~~~~~~~~a~ 162 (170)
T 2o6l_A 145 LNALKRVI----NDPSYKENVM 162 (170)
T ss_dssp HHHHHHHH----HCHHHHHHHH
T ss_pred HHHHHHHH----cCHHHHHHHH
Confidence 99998888 7887555443
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.13 E-value=5.7e-05 Score=91.54 Aligned_cols=182 Identities=11% Similarity=0.033 Sum_probs=135.1
Q ss_pred cccccccccCCCCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCC
Q 002909 562 NSEHIGYLADRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQL 641 (867)
Q Consensus 562 ~~~~lGll~~~~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L 641 (867)
.+..+|+ +++.+++++..++. |=-+..++++.++.+.-|+.+|++...... ..+.+.+.+++.|+
T Consensus 513 ~R~~~gL--p~~~v~f~~fN~~~--Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~-----------~~~~l~~~~~~~gi 577 (723)
T 4gyw_A 513 TRSQYGL--PEDAIVYCNFNQLY--KIDPSTLQMWANILKRVPNSVLWLLRFPAV-----------GEPNIQQYAQNMGL 577 (723)
T ss_dssp EGGGGTC--CTTSEEEECCSCGG--GCCHHHHHHHHHHHHHCSSEEEEEEETTGG-----------GHHHHHHHHHHTTC
T ss_pred chhhcCC--CCCCEEEEeCCccc--cCCHHHHHHHHHHHHhCCCCeEEEEeCcHH-----------HHHHHHHHHHhcCC
Confidence 4567888 77877777777765 445788888888888889999999876543 13567788888887
Q ss_pred C-CcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCcccee-----ec-CceEEE
Q 002909 642 Q-GQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEII-----ID-GVSGFH 714 (867)
Q Consensus 642 ~-~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~~EiI-----~d-g~~G~l 714 (867)
+ ++|.|.+ ..+..+....+.. +|+++=|-.| +-|.|.+||+.+|+|||+-.-..+..=+ .. |-.-++
T Consensus 578 ~~~r~~f~~----~~~~~~~l~~~~~-~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~i 651 (723)
T 4gyw_A 578 PQNRIIFSP----VAPKEEHVRRGQL-ADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI 651 (723)
T ss_dssp CGGGEEEEE----CCCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGB
T ss_pred CcCeEEECC----CCCHHHHHHHhCC-CeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccc
Confidence 4 7899999 4556788887776 9999988666 4488999999999999975422211111 00 111122
Q ss_pred eCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHh
Q 002909 715 IDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYE--CYTWKIYANKVLNMGS 770 (867)
Q Consensus 715 v~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~--~ysw~~~a~~ll~ly~ 770 (867)
..|.++..+.-.++. .|++.+.++.+.-++.... -|+-+.+++.+++.|+
T Consensus 652 --a~~~~~Y~~~a~~la----~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~ 703 (723)
T 4gyw_A 652 --AKNRQEYEDIAVKLG----TDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYL 703 (723)
T ss_dssp --CSSHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHH
Confidence 348888888887776 8999999999988887755 5899999999999765
No 54
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.99 E-value=0.00043 Score=79.28 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=63.6
Q ss_pred CCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecC-ceEEEe
Q 002909 642 QGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDG-VSGFHI 715 (867)
Q Consensus 642 ~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg-~~G~lv 715 (867)
.+++...+|.+. . .+++. ++|+||.= +-..+++||+++|+|+|+....+ .+..+.+. +.|..+
T Consensus 324 ~~~~~v~~w~pq----~---~vL~h~~~~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l 392 (456)
T 2c1x_A 324 RGYGMVVPWAPQ----A---EVLAHEAVGAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392 (456)
T ss_dssp TTTEEEESCCCH----H---HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred CCceEEecCCCH----H---HHhcCCcCCEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEe
Confidence 367888887543 2 34552 36788853 22468999999999999986532 34455555 788888
Q ss_pred CCC--CHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002909 716 DPN--NGDESSNKIADFFEKCKTDAGYWNQMSAAGRQR 751 (867)
Q Consensus 716 ~p~--d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~ 751 (867)
+.+ +.++++++|.+++ .|++ .++|.+++++.
T Consensus 393 ~~~~~~~~~l~~~i~~ll----~~~~-~~~~r~~a~~l 425 (456)
T 2c1x_A 393 EGGVFTKSGLMSCFDQIL----SQEK-GKKLRENLRAL 425 (456)
T ss_dssp GGGSCCHHHHHHHHHHHH----HSHH-HHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHH----CCCc-HHHHHHHHHHH
Confidence 643 5788999998887 6775 45566655543
No 55
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.90 E-value=0.0087 Score=68.83 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCEEecCCCC----cccee-ecCceEEEeCCC-----CHHHHHHHHHHHH
Q 002909 682 LTVIEAMNCGLPTFATNQGG----PAEII-IDGVSGFHIDPN-----NGDESSNKIADFF 731 (867)
Q Consensus 682 ltvlEAMa~GlPVIat~~gG----~~EiI-~dg~~G~lv~p~-----d~e~lA~aI~~ll 731 (867)
.+++||+++|+|+|+-...+ .+..+ +.-+.|..++.. +.++++++|.+++
T Consensus 368 ~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl 427 (480)
T 2vch_A 368 NSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLM 427 (480)
T ss_dssp HHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHh
Confidence 48999999999999976543 33443 456678877643 6788999998887
No 56
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.88 E-value=0.0054 Score=70.48 Aligned_cols=151 Identities=9% Similarity=0.014 Sum_probs=84.5
Q ss_pred CCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccccc
Q 002909 573 KKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQT 652 (867)
Q Consensus 573 ~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~ 652 (867)
...++++.|.+.. ...+.+.+.+..+.+ .+.+++++-+...... +.. ...+.+ .+.. .+++...+|.+
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~~~--~~~--~l~~~~---~~~~--~~~~~v~~~~p 362 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLAN--CKKSFLWIIRPDLVIG--GSV--IFSSEF---TNEI--ADRGLIASWCP 362 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHH--TTCEEEEECCGGGSTT--TGG--GSCHHH---HHHH--TTTEEEESCCC
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHh--cCCcEEEEEcCCcccc--ccc--cCcHhH---HHhc--CCCEEEEeecC
Confidence 3456677787653 233444444444433 2467766644321000 000 000111 1222 46889888755
Q ss_pred CCCChHHHHHHHHc-cCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceee-cCceEEEeCC-CCHHHHHH
Q 002909 653 DRYRNGELYRCIAD-TKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIII-DGVSGFHIDP-NNGDESSN 725 (867)
Q Consensus 653 d~v~~~el~~~la~-~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~-dg~~G~lv~p-~d~e~lA~ 725 (867)
. .+ +++. ++|+||.= +-..+++||+++|+|+|+....+ .+..+. .-+.|..++. -+.+++++
T Consensus 363 q----~~---~L~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~ 431 (482)
T 2pq6_A 363 Q----DK---VLNHPSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAK 431 (482)
T ss_dssp H----HH---HHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHH
T ss_pred H----HH---HhcCCCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHH
Confidence 3 33 4432 13446643 22458999999999999986643 233343 4567888762 36788999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002909 726 KIADFFEKCKTDAGYWNQMSAAGRQR 751 (867)
Q Consensus 726 aI~~ll~~~~~dp~~~~~m~~~ar~~ 751 (867)
+|.+++ .|++ .++|.+++++.
T Consensus 432 ~i~~ll----~~~~-~~~~r~~a~~l 452 (482)
T 2pq6_A 432 LINEVI----AGDK-GKKMKQKAMEL 452 (482)
T ss_dssp HHHHHH----TSHH-HHHHHHHHHHH
T ss_pred HHHHHH----cCCc-HHHHHHHHHHH
Confidence 998887 7876 35666666543
No 57
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.83 E-value=0.0034 Score=71.87 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=76.1
Q ss_pred CCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccccc
Q 002909 573 KKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQT 652 (867)
Q Consensus 573 ~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~ 652 (867)
...++++.|.+...-+.+.+.+++..+.+. +.+++++-+... ...++ .+.+.... .+++..++|.+
T Consensus 276 ~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~---~~l~~------~~~~~~~~---~~~~~v~~w~p 341 (463)
T 2acv_A 276 KSVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEK---KVFPE------GFLEWMEL---EGKGMICGWAP 341 (463)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCG---GGSCT------THHHHHHH---HCSEEEESSCC
T ss_pred CceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCc---ccCCh------hHHHhhcc---CCCEEEEccCC
Confidence 345667778876322333344444444332 466766654320 00001 11111110 25788888654
Q ss_pred CCCChHHHHHHHH-ccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccce-eecCceEEEe-C---C----C
Q 002909 653 DRYRNGELYRCIA-DTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEI-IIDGVSGFHI-D---P----N 718 (867)
Q Consensus 653 d~v~~~el~~~la-~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~Ei-I~dg~~G~lv-~---p----~ 718 (867)
. .+ +++ .++|+||.= +-..+++||+++|+|+|+....+ .+.. ++.-+.|..+ + . -
T Consensus 342 q----~~---vL~h~~~~~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~ 410 (463)
T 2acv_A 342 Q----VE---VLAHKAIGGFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410 (463)
T ss_dssp H----HH---HHHSTTEEEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCC
T ss_pred H----HH---HhCCCccCeEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccc
Confidence 3 33 343 247788864 22468999999999999986533 3444 4566788888 2 2 3
Q ss_pred CHHHHHHHHHHHH
Q 002909 719 NGDESSNKIADFF 731 (867)
Q Consensus 719 d~e~lA~aI~~ll 731 (867)
+.++++++|.+++
T Consensus 411 ~~~~l~~ai~~ll 423 (463)
T 2acv_A 411 AAEEIEKGLKDLM 423 (463)
T ss_dssp CHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH
Confidence 6788888888877
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.61 E-value=0.031 Score=63.77 Aligned_cols=144 Identities=12% Similarity=0.047 Sum_probs=82.4
Q ss_pred CCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHH-HHHHHHcCCCCcEEEcccc
Q 002909 573 KKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKM-HTLIEKYQLQGQFRWIAAQ 651 (867)
Q Consensus 573 ~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l-~~li~~~~L~~~V~flG~~ 651 (867)
+..++++.|.+... ..+.+.+.+..+.+. +.+++++-+... .+.+ ....++ ..+++...+|.
T Consensus 273 ~~vVyvsfGS~~~~-~~~~~~el~~~l~~~--~~~flw~~~~~~------------~~~lp~~~~~~--~~~~~~vv~w~ 335 (454)
T 3hbf_A 273 SSVVYISFGSVVTP-PPHELTALAESLEEC--GFPFIWSFRGDP------------KEKLPKGFLER--TKTKGKIVAWA 335 (454)
T ss_dssp TCEEEEECCSSCCC-CHHHHHHHHHHHHHH--CCCEEEECCSCH------------HHHSCTTHHHH--TTTTEEEESSC
T ss_pred CceEEEecCCCCcC-CHHHHHHHHHHHHhC--CCeEEEEeCCcc------------hhcCCHhHHhh--cCCceEEEeeC
Confidence 34456777877642 233444444444332 456666644321 0111 011122 34788888875
Q ss_pred cCCCChHHHHHHHHccCc--EEEEcCCCCCCCHHHHHHHHcCCCEEecCCCC----ccceeecC-ceEEEeCC--CCHHH
Q 002909 652 TDRYRNGELYRCIADTKG--AFVQPALYEAFGLTVIEAMNCGLPTFATNQGG----PAEIIIDG-VSGFHIDP--NNGDE 722 (867)
Q Consensus 652 ~d~v~~~el~~~la~~aD--vfV~PS~~EgfGltvlEAMa~GlPVIat~~gG----~~EiI~dg-~~G~lv~p--~d~e~ 722 (867)
+ ..+++. .++ +||.= +--.+++||+++|+|+|+-...+ .+..+++. +.|..++. -+.++
T Consensus 336 P----q~~vL~----h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~ 403 (454)
T 3hbf_A 336 P----QVEILK----HSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKES 403 (454)
T ss_dssp C----HHHHHH----STTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHH
T ss_pred C----HHHHHh----hcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHH
Confidence 4 344443 377 55543 11358999999999999976533 33445553 78888864 36788
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 002909 723 SSNKIADFFEKCKTDAGYWNQMSAAGRQ 750 (867)
Q Consensus 723 lA~aI~~ll~~~~~dp~~~~~m~~~ar~ 750 (867)
++++|.+++ .|++ .++|.+++++
T Consensus 404 l~~av~~ll----~~~~-~~~~r~~a~~ 426 (454)
T 3hbf_A 404 IKKALELTM----SSEK-GGIMRQKIVK 426 (454)
T ss_dssp HHHHHHHHH----SSHH-HHHHHHHHHH
T ss_pred HHHHHHHHH----CCCh-HHHHHHHHHH
Confidence 999998887 6642 3445555544
No 59
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.34 E-value=0.0098 Score=63.61 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=61.3
Q ss_pred CcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccC
Q 002909 574 KPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTD 653 (867)
Q Consensus 574 k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d 653 (867)
+.+++++|..+...-...+++++. +. .. -.+|+|.+.. ..+++++..++. +++++.++..+
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~---~~-~~-i~vv~G~~~~-----------~~~~l~~~~~~~---~~v~v~~~~~~ 218 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELP---KT-KI-ISIATSSSNP-----------NLKKLQKFAKLH---NNIRLFIDHEN 218 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSC---TT-SC-EEEEECTTCT-----------THHHHHHHHHTC---SSEEEEESCSC
T ss_pred CeEEEEECCCchhhHHHHHHHHhh---cC-CC-EEEEECCCch-----------HHHHHHHHHhhC---CCEEEEeCHHH
Confidence 456778888765443334444443 21 22 3455666643 245566555543 48999997654
Q ss_pred CCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecC
Q 002909 654 RYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATN 698 (867)
Q Consensus 654 ~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~ 698 (867)
+..+|+. ||+.|.+ .|.|+.|++++|+|+|.-.
T Consensus 219 ------m~~~m~~-aDlvI~~-----gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 219 ------IAKLMNE-SNKLIIS-----ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp ------HHHHHHT-EEEEEEE-----SSHHHHHHHHTTCCEEEEC
T ss_pred ------HHHHHHH-CCEEEEC-----CcHHHHHHHHcCCCEEEEe
Confidence 5666665 9999985 2689999999999999864
No 60
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=97.05 E-value=0.0092 Score=71.62 Aligned_cols=142 Identities=13% Similarity=0.003 Sum_probs=102.2
Q ss_pred ccccC-----CCCcEEEEEeccCCcCChHH-HHHHHH---HhHcc-------------CCCeEEEEEeCCCCCCCCCChH
Q 002909 567 GYLAD-----RKKPIIFSMARLDTVKNITG-LTEWYG---KNKRL-------------RNMVNLVVVAGFFDPSKSHDRE 624 (867)
Q Consensus 567 Gll~~-----~~k~iIl~vGRL~~~Kgid~-LieA~~---~l~~~-------------~~~v~LvIVG~g~~~~~~~d~e 624 (867)
|+..+ ++...++++-|+..+|.... ++..+. ++++. ...+++++.|...+ .|..
T Consensus 588 g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP----~y~~ 663 (879)
T 1ygp_A 588 GVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAP----GYYM 663 (879)
T ss_dssp TCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCT----TCHH
T ss_pred CcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCC----CcHH
Confidence 66657 78899999999999999988 455433 33332 13456655555433 3555
Q ss_pred HHHHHHHHHHHHHHc----CCCC--cEEEcccccCCCChHHHHHHHHccCcEEEEcCC--CCCCCHHHHHHHHcCCCEEe
Q 002909 625 EIAEIKKMHTLIEKY----QLQG--QFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL--YEAFGLTVIEAMNCGLPTFA 696 (867)
Q Consensus 625 e~~~~~~l~~li~~~----~L~~--~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~--~EgfGltvlEAMa~GlPVIa 696 (867)
....++.+..+++.. .+.+ +|.|+.- .+ =.+.+.+..+||+-.+-|. .|+.|..=+=+|.-|.++|+
T Consensus 664 aK~iIklI~~va~~iN~Dp~v~~~LKVVFlen----Y~-VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlg 738 (879)
T 1ygp_A 664 AKLIIKLINCVADIVNNDESIEHLLKVVFVAD----YN-VSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIG 738 (879)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTTSEEEEEETT----CC-HHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHhccChhhCCceEEEEeCC----CC-HHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeee
Confidence 556666666666522 2456 7888872 22 2566666667999999876 89999999999999999999
Q ss_pred cCCCCccceeec--CceEEEeCC
Q 002909 697 TNQGGPAEIIID--GVSGFHIDP 717 (867)
Q Consensus 697 t~~gG~~EiI~d--g~~G~lv~p 717 (867)
|--|...|+.++ ++|+|+|-.
T Consensus 739 tlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 739 TVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp ESCTHHHHHHHHHCGGGSEEESC
T ss_pred cccchhHHHHHHcCcccEEEccC
Confidence 999999999865 558888853
No 61
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=94.84 E-value=0.068 Score=57.86 Aligned_cols=100 Identities=15% Similarity=0.018 Sum_probs=65.9
Q ss_pred CcEEEEEec-cCCcCChH--HHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcC--C-CCcEEE
Q 002909 574 KPIIFSMAR-LDTVKNIT--GLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQ--L-QGQFRW 647 (867)
Q Consensus 574 k~iIl~vGR-L~~~Kgid--~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~--L-~~~V~f 647 (867)
+.+++..|. ..+.|... .+.+++..+.+. +++++++|+..+ .+..+++.+..+ . ...+.+
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e------------~~~~~~i~~~~~~~~~~~~~~l 246 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD------------HEAGNEILAALNTEQQAWCRNL 246 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG------------HHHHHHHHTTSCHHHHTTEEEC
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh------------HHHHHHHHHhhhhccccceEec
Confidence 345566665 55667765 788888877664 689999886543 222233332221 0 123456
Q ss_pred cccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec
Q 002909 648 IAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT 697 (867)
Q Consensus 648 lG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat 697 (867)
.| ..+..++..+++. ||++|... .|..-+ |.++|+|+|+-
T Consensus 247 ~g----~~sl~e~~ali~~-a~l~I~~D----sg~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 247 AG----ETQLDQAVILIAA-CKAIVTND----SGLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TT----TSCHHHHHHHHHT-SSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred cC----cCCHHHHHHHHHh-CCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 66 4567899999997 99999874 244444 99999999985
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=92.55 E-value=0.49 Score=51.71 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=68.1
Q ss_pred CCCCcE-EEEEeccCCcCCh--HHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEE
Q 002909 571 DRKKPI-IFSMARLDTVKNI--TGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRW 647 (867)
Q Consensus 571 ~~~k~i-Il~vGRL~~~Kgi--d~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~f 647 (867)
++++++ ++..|.=.+.|.. +.+.+.+..+.+. +.+++++|+..+ .+..+++.+..+ ...+.+
T Consensus 182 ~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e------------~~~~~~i~~~~~-~~~~~l 246 (349)
T 3tov_A 182 TDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD------------LEMVQPVVEQME-TKPIVA 246 (349)
T ss_dssp CTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT------------HHHHHHHHHTCS-SCCEEC
T ss_pred CCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch------------HHHHHHHHHhcc-cccEEe
Confidence 444444 4556654456665 4677777777654 578888887544 333444455443 234666
Q ss_pred cccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec
Q 002909 648 IAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT 697 (867)
Q Consensus 648 lG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat 697 (867)
.| ..+..|+..+++. ||++|..- .|..-+ |.++|+|+|+-
T Consensus 247 ~g----~~sl~e~~ali~~-a~~~i~~D----sG~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 247 TG----KFQLGPLAAAMNR-CNLLITND----SGPMHV-GISQGVPIVAL 286 (349)
T ss_dssp TT----CCCHHHHHHHHHT-CSEEEEES----SHHHHH-HHTTTCCEEEE
T ss_pred eC----CCCHHHHHHHHHh-CCEEEECC----CCHHHH-HHhcCCCEEEE
Confidence 67 5668899999997 99999872 255555 99999999985
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=90.29 E-value=0.29 Score=50.36 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=47.0
Q ss_pred cEEEcccccCCCChHHHHHHHH-ccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCCCCc--------cceeecCceEEE
Q 002909 644 QFRWIAAQTDRYRNGELYRCIA-DTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGP--------AEIIIDGVSGFH 714 (867)
Q Consensus 644 ~V~flG~~~d~v~~~el~~~la-~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~gG~--------~EiI~dg~~G~l 714 (867)
++...++.. ++..+|+ . ||++|.= +-..+++|++++|+|.|.-..... ++.+.+.+.++.
T Consensus 115 ~v~v~~f~~------~m~~~l~~~-AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~ 183 (224)
T 2jzc_A 115 KVIGFDFST------KMQSIIRDY-SDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWS 183 (224)
T ss_dssp EEEECCSSS------SHHHHHHHH-CSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCE
T ss_pred eEEEeeccc------hHHHHHHhc-CCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEE
Confidence 455556543 4667777 6 9999974 235689999999999998765321 223333334555
Q ss_pred eCCCCHHHHHHHHHHH
Q 002909 715 IDPNNGDESSNKIADF 730 (867)
Q Consensus 715 v~p~d~e~lA~aI~~l 730 (867)
+ +++.++++|.++
T Consensus 184 ~---~~~~L~~~i~~l 196 (224)
T 2jzc_A 184 C---APTETGLIAGLR 196 (224)
T ss_dssp E---CSCTTTHHHHHH
T ss_pred c---CHHHHHHHHHHH
Confidence 5 455666666655
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=88.59 E-value=1.4 Score=47.12 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=64.3
Q ss_pred CCcEEEEEeccCCcCChH--HHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccc
Q 002909 573 KKPIIFSMARLDTVKNIT--GLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAA 650 (867)
Q Consensus 573 ~k~iIl~vGRL~~~Kgid--~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~ 650 (867)
++.+++..|.=.+.|... .+.+.+..+.+ .+++++++++++. +.+..+++.+.. +++.+.|
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~--~~~~vvl~~g~~~-----------e~~~~~~i~~~~---~~~~l~g- 240 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLAD--SGIRIKLPWGAPH-----------EEERAKRLAEGF---AYVEVLP- 240 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTT--TCCEEEECCSSHH-----------HHHHHHHHHTTC---TTEEECC-
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHH--CCCcEEEecCCHH-----------HHHHHHHHHhhC---CcccccC-
Confidence 344556666545566655 67777777754 3688888754432 122233333332 3466777
Q ss_pred ccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEec
Q 002909 651 QTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFAT 697 (867)
Q Consensus 651 ~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat 697 (867)
..+..|+..+++. ||++|..- .|..=+ |.|+|+|+|+-
T Consensus 241 ---~~sl~el~ali~~-a~l~I~~D----SG~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 241 ---KMSLEGVARVLAG-AKFVVSVD----TGLSHL-TAALDRPNITV 278 (326)
T ss_dssp ---CCCHHHHHHHHHT-CSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred ---CCCHHHHHHHHHh-CCEEEecC----CcHHHH-HHHcCCCEEEE
Confidence 5668899999997 99999872 255555 77799999985
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=74.48 E-value=7.6 Score=46.54 Aligned_cols=133 Identities=6% Similarity=0.024 Sum_probs=71.4
Q ss_pred cccccccCCCCcEEEEEeccCCcC----C-----hHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 002909 564 EHIGYLADRKKPIIFSMARLDTVK----N-----ITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHT 634 (867)
Q Consensus 564 ~~lGll~~~~k~iIl~vGRL~~~K----g-----id~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~ 634 (867)
+.+|+ ++++++|+|+-.+.... | +..-++.+.+.. .+++.+++-.-. . +..
T Consensus 530 ~~~~~--~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~li~r~Hp-~---------------~~~ 589 (729)
T 3l7i_A 530 THLNL--PSDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKEL--GDDYVILLRMHY-L---------------ISN 589 (729)
T ss_dssp HHTTC--CSSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHH--TTTEEEEECCCH-H---------------HHT
T ss_pred HHhCC--CCCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHc--CCCeEEEEecCc-c---------------hhc
Confidence 55677 78899999998765431 1 111223332221 246666653321 0 111
Q ss_pred HHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCCEEecCC----------CCccc
Q 002909 635 LIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQ----------GGPAE 704 (867)
Q Consensus 635 li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlPVIat~~----------gG~~E 704 (867)
.....+..+.+.-.... .++..++.. +|++|. -++.++.|++..++|||-... |-.-+
T Consensus 590 ~~~~~~~~~~~~~~~~~------~di~~ll~~-aD~lIT-----DySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d 657 (729)
T 3l7i_A 590 ALDLSGYENFAIDVSNY------NDVSELFLI-SDCLIT-----DYSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMN 657 (729)
T ss_dssp TCCCTTCTTTEEECTTC------SCHHHHHHT-CSEEEE-----SSCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSC
T ss_pred cccccccCCcEEeCCCC------cCHHHHHHH-hCEEEe-----echHHHHhHHhhCCCEEEecCCHHHHhhccCCcccC
Confidence 11111233445443321 235555655 999994 367789999999999997622 11111
Q ss_pred eeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 705 IIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 705 iI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+.+...|-++. +.+++.++|.+..
T Consensus 658 -~~~~~pg~~~~--~~~eL~~~i~~~~ 681 (729)
T 3l7i_A 658 -YMEDLPGPIYT--EPYGLAKELKNLD 681 (729)
T ss_dssp -TTSSSSSCEES--SHHHHHHHHTTHH
T ss_pred -hhHhCCCCeEC--CHHHHHHHHhhhh
Confidence 11122344444 7888888886654
No 66
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=69.76 E-value=60 Score=34.54 Aligned_cols=149 Identities=9% Similarity=-0.005 Sum_probs=89.5
Q ss_pred cEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCC-cEEEcccccC
Q 002909 575 PIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQG-QFRWIAAQTD 653 (867)
Q Consensus 575 ~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~-~V~flG~~~d 653 (867)
+.++.+..=.+.|.++.|+++.+.... .+++-..|.|.. . .-....+.+..|+.- +|-|-|.
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~-hl~~~~l~~~~Gi~~~~Vpy~G~--- 178 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPG---KYSYGSSGTCGV----------L-HLMGESFKMATGTDIVHVPYKGS--- 178 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTT---TCEEEESCTTSH----------H-HHHHHHHHHHHTCCCEEEECSSH---
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCC---cEEEeCCCCCcH----------H-HHHHHHHHHHhCCCeEEcccCCH---
Confidence 455555555678999999887664322 355554443322 0 112233445667642 3444331
Q ss_pred CCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCC-EEec----------CCC-----CccceeecCceEEEeCC
Q 002909 654 RYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLP-TFAT----------NQG-----GPAEIIIDGVSGFHIDP 717 (867)
Q Consensus 654 ~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlP-VIat----------~~g-----G~~EiI~dg~~G~lv~p 717 (867)
.+.+..++....|+++... -.+.+....|.- +++. ++. |..++....-.|+.++.
T Consensus 179 ---~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~ 249 (314)
T 2dvz_A 179 ---GPAVADAVGGQIELIFDNL------PSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPK 249 (314)
T ss_dssp ---HHHHHHHHHTSSSEEEEEH------HHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEET
T ss_pred ---HHHHHHHHcCCceEEEEcH------HHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcC
Confidence 3566677777788887652 245666677743 2221 111 22222222346888888
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002909 718 NNGDESSNKIADFFEKCKTDAGYWNQMSAAGR 749 (867)
Q Consensus 718 ~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar 749 (867)
+-++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 250 g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 281 (314)
T 2dvz_A 250 GTPMDVVNKLRDAAVVALKDPKVIKALDDQGS 281 (314)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTE
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 88999999999999988899998888776654
No 67
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=62.05 E-value=1e+02 Score=32.61 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=89.7
Q ss_pred cEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCC-cEEEcccccC
Q 002909 575 PIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQG-QFRWIAAQTD 653 (867)
Q Consensus 575 ~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~-~V~flG~~~d 653 (867)
+.++.+..=.+.|.++.|+++.+.... .+++-..|.|.. . .-....+.+..|+.- +|-|-|.
T Consensus 112 ~~~lvv~~ds~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~-hl~~~~l~~~~Gi~~~~Vpy~G~--- 174 (312)
T 2f5x_A 112 PMTIIARGDFPPNNIKELAEYVKKNAD---KISLANAGIGAA----------S-HLCGTMLVEALGVNLLTIPYKGT--- 174 (312)
T ss_dssp EEEEEECTTCSCCSHHHHHHHHHHHGG---GCEEEESSTTSH----------H-HHHHHHHHHHHTCCCEEEECSSH---
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEeCCCCCcH----------H-HHHHHHHHHHHCCCeEEeccCCh---
Confidence 445555555678999999998876644 245544443322 0 112233455667642 3444331
Q ss_pred CCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCC-EEec----------CCC-----CccceeecCceEEEeCC
Q 002909 654 RYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLP-TFAT----------NQG-----GPAEIIIDGVSGFHIDP 717 (867)
Q Consensus 654 ~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlP-VIat----------~~g-----G~~EiI~dg~~G~lv~p 717 (867)
.+.+..++....|+.+... -.+.+.+..|.- +++. ++. |..++....-.|+.++.
T Consensus 175 ---~~a~~aL~~G~VD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~ 245 (312)
T 2f5x_A 175 ---APAMNDLLGKQVDLMCDQT------TNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPK 245 (312)
T ss_dssp ---HHHHHHHHTTSSCEEEEEH------HHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEET
T ss_pred ---HHHHHHHHcCCccEEEech------HHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcC
Confidence 3456677777788877652 245666677753 2221 111 12222222346888888
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002909 718 NNGDESSNKIADFFEKCKTDAGYWNQMSAAGR 749 (867)
Q Consensus 718 ~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar 749 (867)
+.++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 246 g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 277 (312)
T 2f5x_A 246 GTPKPVVDKLVKSLQAGLADPKFQERMKQLGA 277 (312)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 88999999999999988899998887766554
No 68
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=61.82 E-value=53 Score=29.34 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=72.2
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGl 682 (867)
..+++|+.+.. .....+....++.+....|.... +..+....+.. ..|+++.=. ..+.-|+
T Consensus 5 ~~~ILivdd~~-----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~ 67 (144)
T 3kht_A 5 SKRVLVVEDNP-----------DDIALIRRVLDRKDIHCQLEFVD------NGAKALYQVQQAKYDLIILDIGLPIANGF 67 (144)
T ss_dssp CEEEEEECCCH-----------HHHHHHHHHHHHTTCCEEEEEES------SHHHHHHHHTTCCCSEEEECTTCGGGCHH
T ss_pred CCEEEEEeCCH-----------HHHHHHHHHHHhcCCCeeEEEEC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHH
Confidence 46788887653 23556777777766432344433 24566665543 247776643 3455678
Q ss_pred HHHHHHHc-----CCCEEecCCCCc----cceeecCceEEEeCCC-CHHHHHHHHHHHHH
Q 002909 683 TVIEAMNC-----GLPTFATNQGGP----AEIIIDGVSGFHIDPN-NGDESSNKIADFFE 732 (867)
Q Consensus 683 tvlEAMa~-----GlPVIat~~gG~----~EiI~dg~~G~lv~p~-d~e~lA~aI~~ll~ 732 (867)
.+++.+.. ++|+|+-....- .+.+..|..+++..|. +.+++.++|..+++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 88888765 688887433222 2344568899999999 99999999988874
No 69
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=59.80 E-value=72 Score=28.75 Aligned_cols=110 Identities=10% Similarity=0.112 Sum_probs=72.1
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH----------ccCcEEEEc
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA----------DTKGAFVQP 674 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la----------~~aDvfV~P 674 (867)
..+++||.+.+ .....+....++.+....|.... +..+....+. ...|+++.=
T Consensus 4 ~~~ILivddd~-----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~dliilD 66 (152)
T 3heb_A 4 SVTIVMIEDDL-----------GHARLIEKNIRRAGVNNEIIAFT------DGTSALNYLFGDDKSGRVSAGRAQLVLLD 66 (152)
T ss_dssp -CEEEEECCCH-----------HHHHHHHHHHHHTTCCCCEEEES------SHHHHHHHHHCTTSSSGGGTTCBEEEEEC
T ss_pred CceEEEEeCCH-----------HHHHHHHHHHHhCCCcceEEEeC------CHHHHHHHHhccccccccccCCCCEEEEe
Confidence 36778887653 24566777778776544566543 2456666663 235777764
Q ss_pred C-CCCCCCHHHHHHHHc-----CCCEEecCC-CC---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 675 A-LYEAFGLTVIEAMNC-----GLPTFATNQ-GG---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 675 S-~~EgfGltvlEAMa~-----GlPVIat~~-gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
. ..+.-|+.+++.+.. ++|+|.... .. ..+.+..|..+++..|.+.+++.++|..+.
T Consensus 67 ~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 67 LNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp SBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 3 345567888887765 678877433 22 223445688999999999999999987764
No 70
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=59.71 E-value=90 Score=27.68 Aligned_cols=109 Identities=10% Similarity=0.082 Sum_probs=70.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc--cCcEEEEcCCC-C-CC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD--TKGAFVQPALY-E-AF 680 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~--~aDvfV~PS~~-E-gf 680 (867)
..+++|+.+.+ .....+....++.|. .|.... +..+....+.. ..|+++.-... + .-
T Consensus 5 ~~~ilivdd~~-----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~ 65 (140)
T 3h5i_A 5 DKKILIVEDSK-----------FQAKTIANILNKYGY--TVEIAL------TGEAAVEKVSGGWYPDLILMDIELGEGMD 65 (140)
T ss_dssp -CEEEEECSCH-----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCSEEEEESSCSSSCC
T ss_pred CcEEEEEeCCH-----------HHHHHHHHHHHHcCC--EEEEec------ChHHHHHHHhcCCCCCEEEEeccCCCCCC
Confidence 35778887653 245566777777653 344322 24566666643 35887765433 3 56
Q ss_pred CHHHHHHHH--cCCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 681 GLTVIEAMN--CGLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 681 GltvlEAMa--~GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
|+.+++.+. ..+|+|.- .... ..+.+..|..+|+..|.+.+++..+|..+++
T Consensus 66 g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 66 GVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp HHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 777776665 47888874 2222 2344556889999999999999999988873
No 71
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.35 E-value=90 Score=27.17 Aligned_cols=110 Identities=9% Similarity=0.027 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc--------cCcEEEEcCC-
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD--------TKGAFVQPAL- 676 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~--------~aDvfV~PS~- 676 (867)
.+++|+.+.. ...+.+....++.+....|.... +..+....+.. ..|+++.=..
T Consensus 3 ~~ilivdd~~-----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 3 KKIFLVEDNK-----------ADIRLIQEALANSTVPHEVVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNL 65 (140)
T ss_dssp CEEEEECCCH-----------HHHHHHHHHHHTCSSCCEEEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSC
T ss_pred CeEEEEeCCH-----------HHHHHHHHHHHhcCCCceEEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCC
Confidence 4677777653 23556667777665433455443 24566776653 4678776433
Q ss_pred CCCCCHHHHHHHH-----cCCCEEecC-CCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 677 YEAFGLTVIEAMN-----CGLPTFATN-QGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 677 ~EgfGltvlEAMa-----~GlPVIat~-~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
.+.-|+.+++.+. .++|+|.-. ... ..+.+..|..|++..|-+.+++...|..+++
T Consensus 66 ~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp SSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 3446777777765 467887643 322 2334456889999999999999999988763
No 72
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=58.35 E-value=92 Score=27.50 Aligned_cols=111 Identities=10% Similarity=0.129 Sum_probs=71.9
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH-----------ccCcEEEE
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA-----------DTKGAFVQ 673 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la-----------~~aDvfV~ 673 (867)
..+++|+.+.+ .....+....++.+....|.... +..+....+. ...|+++.
T Consensus 6 ~~~iLivdd~~-----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~~dlvi~ 68 (149)
T 1k66_A 6 TQPLLVVEDSD-----------EDFSTFQRLLQREGVVNPIYRCI------TGDQALDFLYQTGSYCNPDIAPRPAVILL 68 (149)
T ss_dssp TSCEEEECCCH-----------HHHHHHHHHHHHTTBCSCEEEEC------SHHHHHHHHHTCCSSSCGGGCCCCSEEEE
T ss_pred CccEEEEECCH-----------HHHHHHHHHHHHcCCCceEEEEC------CHHHHHHHHHhcccccCcccCCCCcEEEE
Confidence 45677777653 23556677777766433455543 2456667665 34677776
Q ss_pred cCC-CCCCCHHHHHHHH-----cCCCEEecC-CCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 674 PAL-YEAFGLTVIEAMN-----CGLPTFATN-QGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 674 PS~-~EgfGltvlEAMa-----~GlPVIat~-~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
=.. .+.-|+.+++.+. ..+|+|... ... ..+.+..|..|++..|.+.+++...|..+++
T Consensus 69 D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 433 3446777888775 457877643 322 2333456889999999999999999988763
No 73
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=57.80 E-value=81 Score=28.09 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=69.6
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGl 682 (867)
..+++|+.+... ....+.......|. .|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 8 ~~~iLivd~~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 68 (147)
T 2zay_A 8 WWRIMLVDTQLP-----------ALAASISALSQEGF--DIIQCG------NAIEAVPVAVKTHPHLIITEANMPKISGM 68 (147)
T ss_dssp CEEEEEECTTGG-----------GGHHHHHHHHHHTE--EEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHH
T ss_pred CceEEEEeCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHH
Confidence 467888887654 23455666666543 344322 23455555432 357777643 3345677
Q ss_pred HHHHHHHc-----CCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHHHH
Q 002909 683 TVIEAMNC-----GLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFFEK 733 (867)
Q Consensus 683 tvlEAMa~-----GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~ 733 (867)
.+++.+.. ++|+|.- ..... .+.+..|..+++..|.+.+++..+|..++..
T Consensus 69 ~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 69 DLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp HHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 88888764 6787764 33332 2334568899999999999999999888743
No 74
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=55.75 E-value=97 Score=27.27 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
..+++|+.+.. .....+....++.|. .|.... +..+..+.+.. ..|+++.-.. .+.-|+
T Consensus 6 ~~~iLivdd~~-----------~~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 66 (140)
T 3grc_A 6 RPRILICEDDP-----------DIARLLNLMLEKGGF--DSDMVH------SAAQALEQVARRPYAAMTVDLNLPDQDGV 66 (140)
T ss_dssp CSEEEEECSCH-----------HHHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHHHSCCSEEEECSCCSSSCHH
T ss_pred CCCEEEEcCCH-----------HHHHHHHHHHHHCCC--eEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 35777887653 234566667776654 244332 23455555533 3577776433 455677
Q ss_pred HHHHHHHc-----CCCEEecCCCC----cc-ceeecCceEEEeCCCCHHHHHHHHHHHHHH
Q 002909 683 TVIEAMNC-----GLPTFATNQGG----PA-EIIIDGVSGFHIDPNNGDESSNKIADFFEK 733 (867)
Q Consensus 683 tvlEAMa~-----GlPVIat~~gG----~~-EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~ 733 (867)
.+++.+.. .+|+|.-.... .. +.+..|..+|+..|.+.+++..+|..++++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 67 SLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp HHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 88887765 67887743322 12 455668899999999999999999888743
No 75
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=53.79 E-value=74 Score=33.51 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=86.2
Q ss_pred cEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCC-CcEEEcccccC
Q 002909 575 PIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQ-GQFRWIAAQTD 653 (867)
Q Consensus 575 ~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~-~~V~flG~~~d 653 (867)
+.++.+..=.+.|.++.|+++.+.... .+++-..|.|.. . .-....+.+..|+. .+|.|-|.
T Consensus 103 ~~~lvv~~~s~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~-hl~~~~l~~~~G~~~~~Vpy~g~--- 165 (301)
T 2qpq_A 103 PSVFVVPAGSKYKTLGELMAAAKQTNT---QVTYGSCGNGTP----------Q-HLAGELLNVSAKTHMVHVPYKGC--- 165 (301)
T ss_dssp EEEEEEETTCSCCSHHHHHHHTCSSSC---CCEEEESSTTSH----------H-HHHHHHHHHHHTCCCEEEECSSH---
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEecCCCCcH----------H-HHHHHHHHHHhCCCeEEeccCCh---
Confidence 445555544678999988876543211 344444443322 0 11223344556764 23444441
Q ss_pred CCChHHHHHHHHccCcEEEEcCCCCCCCHHHHHHHHcCCC-EEe-c---------CCC-----CccceeecCceEEEeCC
Q 002909 654 RYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLP-TFA-T---------NQG-----GPAEIIIDGVSGFHIDP 717 (867)
Q Consensus 654 ~v~~~el~~~la~~aDvfV~PS~~EgfGltvlEAMa~GlP-VIa-t---------~~g-----G~~EiI~dg~~G~lv~p 717 (867)
.+.+..++....|+++... -.+.+.+..|.- +++ + ++. |...+....-.|+.++.
T Consensus 166 ---~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~ 236 (301)
T 2qpq_A 166 ---GPALNDVLGSQIGLAVVTA------SSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPG 236 (301)
T ss_dssp ---HHHHHHHHTTSSSCEEEEH------HHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEET
T ss_pred ---HHHHHHHHCCCccEEEEcH------HHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecC
Confidence 3456667777788877651 245666677742 222 1 111 12222112346888888
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002909 718 NNGDESSNKIADFFEKCKTDAGYWNQMSAAGR 749 (867)
Q Consensus 718 ~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar 749 (867)
+-++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 237 g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~ 268 (301)
T 2qpq_A 237 ATPMAVRQKLYDGIAKVMQRDDVQKKLADLGY 268 (301)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 88999999999999888899998888776654
No 76
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=52.99 E-value=51 Score=29.16 Aligned_cols=106 Identities=4% Similarity=-0.009 Sum_probs=65.0
Q ss_pred CCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCCCCCCCH
Q 002909 604 NMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPALYEAFGL 682 (867)
Q Consensus 604 ~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~~EgfGl 682 (867)
...+++|+.+... ..+.+....+..+. .|.... +..+....+.. ..|++++| +.-|+
T Consensus 17 ~~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvi~~---~~~g~ 74 (137)
T 2pln_A 17 GSMRVLLIEKNSV-----------LGGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNAL 74 (137)
T ss_dssp TCSEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHSCCSEEEEC---STTHH
T ss_pred CCCeEEEEeCCHH-----------HHHHHHHHHHHcCc--EEEEeC------CHHHHHHHHHcCCCCEEEEc---CccHH
Confidence 3467778776532 34556666666543 344332 23455554433 35777733 34466
Q ss_pred HHHHHHHc---CCCEEec-CCCC---ccceeecCceEEEeCCC-CHHHHHHHHHHHH
Q 002909 683 TVIEAMNC---GLPTFAT-NQGG---PAEIIIDGVSGFHIDPN-NGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa~---GlPVIat-~~gG---~~EiI~dg~~G~lv~p~-d~e~lA~aI~~ll 731 (867)
.+++.+.. .+|+|.- .... ..+.+..|..+|+..|. +.+++..+|..++
T Consensus 75 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 75 SFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 66666653 7787764 3322 23344568899999999 9999999997776
No 77
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=52.14 E-value=7.2 Score=40.69 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.2
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.|++.|.++||+|+ +++|.
T Consensus 15 ~L~~~L~~~G~~V~----~l~R~ 33 (298)
T 4b4o_A 15 ALTQLLNARGHEVT----LVSRK 33 (298)
T ss_dssp HHHHHHHHTTCEEE----EEESS
T ss_pred HHHHHHHHCCCEEE----EEECC
Confidence 57778999999999 88884
No 78
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=51.92 E-value=1.2e+02 Score=26.36 Aligned_cols=108 Identities=13% Similarity=0.236 Sum_probs=68.7
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc--cCcEEEEcC-CCCCCCH
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD--TKGAFVQPA-LYEAFGL 682 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~--~aDvfV~PS-~~EgfGl 682 (867)
.+++|+.+.+ ...+.+....++.|.. .|.... +..+....+.. ..|+++.=. ..+.-|+
T Consensus 6 ~~iLivdd~~-----------~~~~~l~~~L~~~g~~-~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~ 67 (129)
T 3h1g_A 6 MKLLVVDDSS-----------TMRRIIKNTLSRLGYE-DVLEAE------HGVEAWEKLDANADTKVLITDWNMPEMNGL 67 (129)
T ss_dssp CCEEEECSCH-----------HHHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHCTTCCEEEECSCCSSSCHH
T ss_pred cEEEEEeCCH-----------HHHHHHHHHHHHcCCc-EEEEeC------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHH
Confidence 5677887653 2455677777776642 343322 23455554432 257777533 3455678
Q ss_pred HHHHHHHc-----CCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMNC-----GLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa~-----GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+.. .+|+|.. ..+.. .+.+..|..+|+..|-+++++.++|..++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 68 DLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp HHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 88888764 5788774 33332 23445688999999999999999998776
No 79
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=49.91 E-value=1.3e+02 Score=26.31 Aligned_cols=109 Identities=11% Similarity=0.104 Sum_probs=69.2
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
..+++|+.+.. ...+.+....+..+. .|.... +..+....+.. ..|+++.-.. .+.-|+
T Consensus 7 ~~~iLivdd~~-----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 67 (142)
T 3cg4_A 7 KGDVMIVDDDA-----------HVRIAVKTILSDAGF--HIISAD------SGGQCIDLLKKGFSGVVLLDIMMPGMDGW 67 (142)
T ss_dssp CCEEEEECSCH-----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTCCCEEEEEESCCSSSCHH
T ss_pred CCeEEEEcCCH-----------HHHHHHHHHHHHCCe--EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 56788887653 235566667776653 344332 24566666554 2466665432 345677
Q ss_pred HHHHHHHc-----CCCEEec-CCC---CccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 683 TVIEAMNC-----GLPTFAT-NQG---GPAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 683 tvlEAMa~-----GlPVIat-~~g---G~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
.+++.+.. .+|+|.- ... ...+.+..|..+++..|.+.+++...|..++.
T Consensus 68 ~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 68 DTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp HHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 78887754 4677764 322 23344556788999999999999999988774
No 80
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=48.78 E-value=71 Score=33.02 Aligned_cols=37 Identities=32% Similarity=0.420 Sum_probs=26.0
Q ss_pred cceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCC
Q 002909 280 MFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLI 343 (867)
Q Consensus 280 ~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~ 343 (867)
+|||++....|+. .-| +. .|.+.|++.| +|. |+++..
T Consensus 1 ~M~ILlTNDDGi~----------apG----i~--------aL~~~l~~~g-~V~----VVAP~~ 37 (251)
T 2phj_A 1 MPTFLLVNDDGYF----------SPG----IN--------ALREALKSLG-RVV----VVAPDR 37 (251)
T ss_dssp -CEEEEECSSCTT----------CHH----HH--------HHHHHHTTTS-EEE----EEEESS
T ss_pred CCEEEEECCCCCC----------CHH----HH--------HHHHHHHhcC-CEE----EEecCC
Confidence 3899999998873 223 33 4555777788 888 999854
No 81
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=46.76 E-value=1.4e+02 Score=26.12 Aligned_cols=109 Identities=8% Similarity=0.052 Sum_probs=69.9
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH-------ccCcEEEEcCC-
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA-------DTKGAFVQPAL- 676 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la-------~~aDvfV~PS~- 676 (867)
..+++|+.+.+ ...+.+....++.+....|.... +..+....+. ...|+++.=..
T Consensus 7 ~~~ILivdd~~-----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~dlii~D~~l 69 (143)
T 2qvg_A 7 KVDILYLEDDE-----------VDIQSVERVFHKISSLIKIEIAK------SGNQALDMLYGRNKENKIHPKLILLDINI 69 (143)
T ss_dssp CCSEEEECCCH-----------HHHHHHHHHHHHHCTTCCEEEES------SHHHHHHHHHTCTTCCCCCCSEEEEETTC
T ss_pred CCeEEEEeCCH-----------HHHHHHHHHHHHhCCCceEEEEC------CHHHHHHHHHhcccccCCCCCEEEEecCC
Confidence 45678887764 24566777777776533566544 2456666665 24677776433
Q ss_pred CCCCCHHHHHHHH-----cCCCEEecC-CCC---ccceeecCceEEEeCCCCHHHHHHHHHHH
Q 002909 677 YEAFGLTVIEAMN-----CGLPTFATN-QGG---PAEIIIDGVSGFHIDPNNGDESSNKIADF 730 (867)
Q Consensus 677 ~EgfGltvlEAMa-----~GlPVIat~-~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~l 730 (867)
.+.-|+.+++.+. ..+|+|... ... ..+.+..|..+++..|-+.+++.+++...
T Consensus 70 ~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 70 PKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp TTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 3445777787775 467877643 222 23344568899999999999998886543
No 82
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=45.34 E-value=1.7e+02 Score=30.14 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=22.8
Q ss_pred cCCCCeEEEE--C-C--------CChHHHHHHHHHhcCCcEEEEEc
Q 002909 406 MEGKPDLIIG--N-Y--------SDGNLVASLMASKLGITQATIAH 440 (867)
Q Consensus 406 l~~kPDIIh~--h-~--------~~~~l~a~lla~~~gip~V~t~H 440 (867)
+..+||+|++ | . ..+...|.+-+..+|+|-+-...
T Consensus 83 ~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 83 MDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp STTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 3568999994 2 1 12334566667789999986543
No 83
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=44.59 E-value=8.9 Score=39.52 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecC
Q 002909 278 PNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 278 pm~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
+|+|||+|... |+- |. .+++.|.++||+|. ++++.
T Consensus 3 ~m~~~ilVtGa-G~i-----------G~--------------~l~~~L~~~g~~V~----~~~r~ 37 (286)
T 3ius_A 3 AMTGTLLSFGH-GYT-----------AR--------------VLSRALAPQGWRII----GTSRN 37 (286)
T ss_dssp --CCEEEEETC-CHH-----------HH--------------HHHHHHGGGTCEEE----EEESC
T ss_pred CCcCcEEEECC-cHH-----------HH--------------HHHHHHHHCCCEEE----EEEcC
Confidence 57899988864 542 22 46678888999998 88884
No 84
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=43.40 E-value=20 Score=36.36 Aligned_cols=40 Identities=43% Similarity=0.664 Sum_probs=24.4
Q ss_pred cceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecC
Q 002909 280 MFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 280 ~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
+++|++|++|-= +.++| .||. |+ .+.++|++|. |+++|..
T Consensus 1 m~~vL~v~aHPD---De~l~---~ggt--------------ia-~~~~~G~~v~--vv~lT~G 40 (227)
T 1uan_A 1 MLDLLVVAPHPD---DGELG---CGGT--------------LA-RAKAEGLSTG--ILDLTRG 40 (227)
T ss_dssp CEEEEEEESSTT---HHHHH---HHHH--------------HH-HHHHTTCCEE--EEEEECC
T ss_pred CceEEEEEeCCC---cHHHh---HHHH--------------HH-HHHhCCCcEE--EEEEcCC
Confidence 478999998842 12232 2454 22 3557999998 5666653
No 85
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=42.36 E-value=1.7e+02 Score=30.37 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhHccCCCe-EEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHcc
Q 002909 589 ITGLTEWYGKNKRLRNMV-NLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADT 667 (867)
Q Consensus 589 id~LieA~~~l~~~~~~v-~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~ 667 (867)
+..-++.+.++ .|+. ++.++++..+ .......+.+++.++++++. +....... ..+..+....+...
T Consensus 126 ~~~~l~l~~~l---~P~~k~vgvi~~~~~------~~s~~~~~~~~~~~~~~g~~--~v~~~~~~-~~~~~~~~~~l~~~ 193 (302)
T 3lkv_A 126 VEQHVELIKEI---LPNVKSIGVVYNPGE------ANAVSLMELLKLSAAKHGIK--LVEATALK-SADVQSATQAIAEK 193 (302)
T ss_dssp HHHHHHHHHHH---STTCCEEEEEECTTC------HHHHHHHHHHHHHHHHTTCE--EEEEECSS-GGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHh---CCCCCEEEEEeCCCc------ccHHHHHHHHHHHHHHcCCE--EEEEecCC-hHHHHHHHHhccCC
Confidence 34444544444 3443 4656665432 22234566778888888763 33333222 12334445555555
Q ss_pred CcEEEEcCCC---CCCCHHHHHHHHcCCCEEecCC
Q 002909 668 KGAFVQPALY---EAFGLTVIEAMNCGLPTFATNQ 699 (867)
Q Consensus 668 aDvfV~PS~~---EgfGltvlEAMa~GlPVIat~~ 699 (867)
.|++..+... .+......-+..+++||++...
T Consensus 194 ~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 194 SDVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp CSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH
T ss_pred eeEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc
Confidence 8888777541 1222234456788999998754
No 86
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=42.09 E-value=1.9e+02 Score=25.81 Aligned_cols=110 Identities=5% Similarity=0.012 Sum_probs=67.2
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc--------cCcEEEEcCC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD--------TKGAFVQPAL 676 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~--------~aDvfV~PS~ 676 (867)
..+++|+.+.+. ....+....++.+..-.|.... +..+....+.. ..|++++=..
T Consensus 8 ~~~ILivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~dlillD~~ 70 (149)
T 1i3c_A 8 PKVILLVEDSKA-----------DSRLVQEVLKTSTIDHELIILR------DGLAAMAFLQQQGEYENSPRPNLILLDLN 70 (149)
T ss_dssp CEEEEEECCCHH-----------HHHHHHHHHHSCCSCEEEEEEC------SHHHHHHHHTTCGGGTTCCCCSEEEECSC
T ss_pred CCeEEEEECCHH-----------HHHHHHHHHHhcCCCccEEEeC------CHHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 467788876532 3455566666544321333322 24566666652 3678776433
Q ss_pred -CCCCCHHHHHHHHc-----CCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 677 -YEAFGLTVIEAMNC-----GLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 677 -~EgfGltvlEAMa~-----GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
...-|+.+++.+.. .+|+|.- .... ..+.+..|..||+..|.+.+++..+|..++
T Consensus 71 lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp CSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 24457777777753 5687764 3332 233445688999999999999999887665
No 87
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=41.62 E-value=23 Score=34.72 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=23.6
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHH-HHHCCCcee
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLR-IKQQGLSVK 333 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~-L~~~GheV~ 333 (867)
|+|||++|+. . |..+|....+. +.+++. |.+.|++|+
T Consensus 1 mMmkilii~g--S---------~r~~g~t~~la-------~~i~~~~l~~~g~~v~ 38 (197)
T 2vzf_A 1 MTYSIVAISG--S---------PSRNSTTAKLA-------EYALAHVLARSDSQGR 38 (197)
T ss_dssp CCEEEEEEEC--C---------SSTTCHHHHHH-------HHHHHHHHHHSSEEEE
T ss_pred CCceEEEEEC--C---------CCCCChHHHHH-------HHHHHHHHHHCCCeEE
Confidence 5689999963 2 23355443333 256667 778899888
No 88
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=41.49 E-value=1.5e+02 Score=26.82 Aligned_cols=112 Identities=11% Similarity=0.158 Sum_probs=71.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGl 682 (867)
..+++|+.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~ 67 (154)
T 3gt7_A 7 AGEILIVEDSPT-----------QAEHLKHILEETGY--QTEHVR------NGREAVRFLSLTRPDLIISDVLMPEMDGY 67 (154)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHTTCCCSEEEEESCCSSSCHH
T ss_pred CCcEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 467888876532 34556666666553 343322 24566666543 247776643 3455677
Q ss_pred HHHHHHH-----cCCCEEecC-CCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHHHhh
Q 002909 683 TVIEAMN-----CGLPTFATN-QGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFEKCK 735 (867)
Q Consensus 683 tvlEAMa-----~GlPVIat~-~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~~~ 735 (867)
.+++.+. ..+|+|+.. ... ..+.+..|..+|+..|-+.+++..+|..++....
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7887775 367887643 222 2234456889999999999999999998885443
No 89
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=39.55 E-value=1.5e+02 Score=28.78 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (219)
T 3dqp_A 15 SLLKSLSTTDYQIY----AGARK 33 (219)
T ss_dssp HHHHHHTTSSCEEE----EEESS
T ss_pred HHHHHHHHCCCEEE----EEECC
Confidence 45668888999998 88884
No 90
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=39.45 E-value=22 Score=34.62 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=23.2
Q ss_pred hcCCCcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 275 SRLPNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 275 ~r~pm~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
.++.+.|||+|=|.|.-+ .|-+.|.+.|.++||+|.
T Consensus 15 ~~~~~~MkIaIgsDhaG~-----------------------~lK~~i~~~L~~~G~eV~ 50 (169)
T 3ph3_A 15 VPRGSHMKIGIGSDHGGY-----------------------NLKREIADFLKKRGYEVI 50 (169)
T ss_dssp ------CEEEEEECGGGH-----------------------HHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCEEEEEeCchHH-----------------------HHHHHHHHHHHHCCCEEE
Confidence 356677999999987643 133467778999999998
No 91
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=38.55 E-value=1.9e+02 Score=30.05 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=12.7
Q ss_pred HHHHHHHHCCCceeeccEEEec
Q 002909 320 ELLLRIKQQGLSVKPQILVVTR 341 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~ 341 (867)
.|+++|.++|+++. |+++.+
T Consensus 39 ~l~~~L~~~g~~~~--v~~~~~ 58 (346)
T 4egb_A 39 NFVHYMLQSYETYK--IINFDA 58 (346)
T ss_dssp HHHHHHHHHCTTEE--EEEEEC
T ss_pred HHHHHHHhhCCCcE--EEEEec
Confidence 45668888997666 224444
No 92
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=38.38 E-value=1.8e+02 Score=26.62 Aligned_cols=110 Identities=13% Similarity=0.220 Sum_probs=68.7
Q ss_pred CCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCC
Q 002909 604 NMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFG 681 (867)
Q Consensus 604 ~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfG 681 (867)
.+.+++||-+.+ ...+-+..+.++.|.. .|.... +-.+....+.. .-|+.+.=- ..+--|
T Consensus 11 k~~rILiVDD~~-----------~~r~~l~~~L~~~G~~-~v~~a~------~g~~al~~~~~~~~DlillD~~MP~mdG 72 (134)
T 3to5_A 11 KNMKILIVDDFS-----------TMRRIVKNLLRDLGFN-NTQEAD------DGLTALPMLKKGDFDFVVTDWNMPGMQG 72 (134)
T ss_dssp TTCCEEEECSCH-----------HHHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCH
T ss_pred CCCEEEEEeCCH-----------HHHHHHHHHHHHcCCc-EEEEEC------CHHHHHHHHHhCCCCEEEEcCCCCCCCH
Confidence 357788886653 2345566777777653 343321 12344443332 346766522 235568
Q ss_pred HHHHHHHH-----cCCCEEec-CCCCcc---ceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 682 LTVIEAMN-----CGLPTFAT-NQGGPA---EIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 682 ltvlEAMa-----~GlPVIat-~~gG~~---EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+.+++.+- ..+|||.- ..+... +...-|.++|+..|-+++++.++|.+++
T Consensus 73 ~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 73 IDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp HHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 88888875 46888864 444332 2335688999999999999999998876
No 93
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=37.95 E-value=1.7e+02 Score=26.07 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH-ccCcEEEEcC-CCCCCC
Q 002909 604 NMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA-DTKGAFVQPA-LYEAFG 681 (867)
Q Consensus 604 ~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la-~~aDvfV~PS-~~EgfG 681 (867)
...+++|+.+.+. ..+.+..+..+.+. ...++... +..+..+.+. ...|++++-. ..+.-|
T Consensus 14 ~~~~iLivdd~~~-----------~~~~l~~~L~~~~~---~~~v~~~~---~~~~a~~~l~~~~~dlii~d~~l~~~~g 76 (152)
T 3eul_A 14 EKVRVVVGDDHPL-----------FREGVVRALSLSGS---VNVVGEAD---DGAAALELIKAHLPDVALLDYRMPGMDG 76 (152)
T ss_dssp CCEEEEEECSSHH-----------HHHHHHHHHHHHSS---EEEEEEES---SHHHHHHHHHHHCCSEEEEETTCSSSCH
T ss_pred ceEEEEEEcCCHH-----------HHHHHHHHHhhCCC---eEEEEEeC---CHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 4567777776532 34556666666542 22222111 2345555443 2357766643 345567
Q ss_pred HHHHHHHHc---CCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 682 LTVIEAMNC---GLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 682 ltvlEAMa~---GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
+.+++.+.. .+|+|.. .... ..+.+..|..||+..|.+.+++.++|..++.
T Consensus 77 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 77 AQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHc
Confidence 777776653 5677664 3322 2234566889999999999999999988873
No 94
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=37.35 E-value=2.1e+02 Score=25.03 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
..+++|+.+.+. ....+....+..+. .|.... +..+....+.. ..|+++.-.. ...-|+
T Consensus 4 ~~~Ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvllD~~l~~~~g~ 64 (136)
T 2qzj_A 4 QTKILIIDGDKD-----------NCQKLKGFLEEKGI--SIDLAY------NCEEAIGKIFSNKYDLIFLEIILSDGDGW 64 (136)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHHHCCCSEEEEESEETTEEHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHCCC--EEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 357778876532 34556666665443 343322 23455555443 3577776332 233567
Q ss_pred HHHHHHHc--CCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 683 TVIEAMNC--GLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 683 tvlEAMa~--GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
.+++.+.. .+|+|.- .... ..+.+..|..||+..|.+.+++..+|..++.
T Consensus 65 ~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 65 TLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 77777653 5787764 3322 2334456889999999999999999987764
No 95
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=36.67 E-value=2.1e+02 Score=24.91 Aligned_cols=75 Identities=9% Similarity=0.093 Sum_probs=45.9
Q ss_pred hHHHHHHHHc-cCcEEEEcC-CCCCCCHHHHHHHH-----cCCCEEecC-C---CCccceeecCceEEEeCCCCHHHHHH
Q 002909 657 NGELYRCIAD-TKGAFVQPA-LYEAFGLTVIEAMN-----CGLPTFATN-Q---GGPAEIIIDGVSGFHIDPNNGDESSN 725 (867)
Q Consensus 657 ~~el~~~la~-~aDvfV~PS-~~EgfGltvlEAMa-----~GlPVIat~-~---gG~~EiI~dg~~G~lv~p~d~e~lA~ 725 (867)
..+....+.. ..|+++.-. ..+.-|+.+++.+. .++|+|... . ....+.+..|..+|+..|.+.+++..
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 114 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLS 114 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHH
Confidence 3455554432 357776643 23445666777765 567887642 2 22334456688999999999999999
Q ss_pred HHHHHH
Q 002909 726 KIADFF 731 (867)
Q Consensus 726 aI~~ll 731 (867)
+|..++
T Consensus 115 ~i~~~~ 120 (140)
T 3n53_A 115 RIEIHL 120 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998877
No 96
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=36.44 E-value=2.2e+02 Score=24.87 Aligned_cols=110 Identities=7% Similarity=-0.029 Sum_probs=67.1
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH------ccCcEEEEcC-CC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA------DTKGAFVQPA-LY 677 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la------~~aDvfV~PS-~~ 677 (867)
..+++||.+.+. ....+..+.+..+....|.... +..+....+. ...|++++-. ..
T Consensus 9 ~~~iLivdd~~~-----------~~~~l~~~l~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~dlvi~D~~l~ 71 (146)
T 3ilh_A 9 IDSVLLIDDDDI-----------VNFLNTTIIRMTHRVEEIQSVT------SGNAAINKLNELYAAGRWPSIICIDINMP 71 (146)
T ss_dssp EEEEEEECSCHH-----------HHHHHHHHHHTTCCEEEEEEES------SHHHHHHHHHHHHTSSCCCSEEEEESSCS
T ss_pred cceEEEEeCCHH-----------HHHHHHHHHHhcCCCeeeeecC------CHHHHHHHHHHhhccCCCCCEEEEcCCCC
Confidence 467788876532 3445566666554321343322 2455666554 2367777643 34
Q ss_pred CCCCHHHHHHHHc-------CCCEEecCCCCc----cceeecC-ceEEEeCCCCHHHHHHHHHHHH
Q 002909 678 EAFGLTVIEAMNC-------GLPTFATNQGGP----AEIIIDG-VSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 678 EgfGltvlEAMa~-------GlPVIat~~gG~----~EiI~dg-~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+.-|+.+++.+.. .+|+|......- .+....| ..+|+..|-+.+++.++|...+
T Consensus 72 ~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 72 GINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp SSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 5567777777654 567766433222 2333456 8899999999999999998776
No 97
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=35.41 E-value=30 Score=35.54 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=24.5
Q ss_pred cceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecC
Q 002909 280 MFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 280 ~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.++|++|++|-= +.++|- ||. | ..++++|++|. |+++|..
T Consensus 3 ~~~vL~v~aHPD---De~l~~---Ggt--------------i-a~~~~~G~~V~--vv~lT~G 42 (242)
T 2ixd_A 3 GLHILAFGAHAD---DVEIGM---AGT--------------I-AKYTKQGYEVG--ICDLTEA 42 (242)
T ss_dssp CCSEEEEESSTT---HHHHHH---HHH--------------H-HHHHHTTCCEE--EEEEECC
T ss_pred CccEEEEEeCCC---hHHHhH---HHH--------------H-HHHHHCCCeEE--EEEEcCC
Confidence 368999998842 222322 554 1 24567999998 5566653
No 98
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=35.39 E-value=81 Score=28.10 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=63.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH--ccCcEEEEcCC-CCCCC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA--DTKGAFVQPAL-YEAFG 681 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la--~~aDvfV~PS~-~EgfG 681 (867)
..+++||.+... ....+..+.++.+- -.|.... +. .+.+..+.. ...|++++=.. .+.-|
T Consensus 20 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~-~~v~~~~--~~---~~~~~~~~~~~~~~dlvi~D~~l~~~~g 82 (146)
T 4dad_A 20 MINILVASEDAS-----------RLAHLARLVGDAGR-YRVTRTV--GR---AAQIVQRTDGLDAFDILMIDGAALDTAE 82 (146)
T ss_dssp GCEEEEECSCHH-----------HHHHHHHHHHHHCS-CEEEEEC--CC---HHHHTTCHHHHTTCSEEEEECTTCCHHH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHhhCCC-eEEEEeC--CH---HHHHHHHHhcCCCCCEEEEeCCCCCccH
Confidence 456777766532 34556666666541 1232221 11 223333332 34677776432 33446
Q ss_pred HHHHHHHHc---CCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 682 LTVIEAMNC---GLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 682 ltvlEAMa~---GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
+.+++.+.. .+|+|.- .... ..+.+..|..+|+..|.+.+++..+|..+++
T Consensus 83 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 83 LAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 666665543 6777764 3222 2334566889999999999999999988773
No 99
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=35.26 E-value=1.4e+02 Score=26.61 Aligned_cols=75 Identities=9% Similarity=0.109 Sum_probs=48.8
Q ss_pred hHHHHHHHHc-cCcEEEEcC-CCCCCCHHHHHHHHc---CCCEEecC-CCC---ccceeecCceEEEeCCCCHHHHHHHH
Q 002909 657 NGELYRCIAD-TKGAFVQPA-LYEAFGLTVIEAMNC---GLPTFATN-QGG---PAEIIIDGVSGFHIDPNNGDESSNKI 727 (867)
Q Consensus 657 ~~el~~~la~-~aDvfV~PS-~~EgfGltvlEAMa~---GlPVIat~-~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI 727 (867)
..+..+.+.. ..|++++-. ..+.-|+.+++.+.. .+|+|.-. ... ..+.+..|..+|+..|.+.+++.++|
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 134 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTL 134 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHH
Confidence 3455555533 246666543 344567777776654 56776643 222 23445668899999999999999999
Q ss_pred HHHH
Q 002909 728 ADFF 731 (867)
Q Consensus 728 ~~ll 731 (867)
..++
T Consensus 135 ~~~~ 138 (150)
T 4e7p_A 135 HTVL 138 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8887
No 100
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=34.72 E-value=1.5e+02 Score=30.46 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCCCeEEEE--C----C-----CChHHHHHHHHHhcCCcEEEEEc
Q 002909 407 EGKPDLIIG--N----Y-----SDGNLVASLMASKLGITQATIAH 440 (867)
Q Consensus 407 ~~kPDIIh~--h----~-----~~~~l~a~lla~~~gip~V~t~H 440 (867)
..+||+|++ | . ..+...|.+-+..+|+|-|-...
T Consensus 85 ~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 85 FGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp SCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 568999994 2 1 12334566667789999986543
No 101
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=33.58 E-value=35 Score=34.02 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=23.2
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHC--CCcee
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQ--GLSVK 333 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~--GheV~ 333 (867)
|+|||++|+.|--| ..+|....+ .+.+.+.+.++ |++|+
T Consensus 3 mM~kiLiI~gSpr~---------~~~S~s~~l-------~~~~~~~~~~~~~g~ev~ 43 (211)
T 3p0r_A 3 AMTKVLFVKANNRP---------AEQAVSVKL-------YEAFLASYKEAHPNDTVV 43 (211)
T ss_dssp -CCEEEEEECCCSC---------TTTCHHHHH-------HHHHHHHHHHHCTTSEEE
T ss_pred ccCEEEEEEeCCCC---------CCCCHHHHH-------HHHHHHHHHHhCCCCeEE
Confidence 68999999743221 134443322 23566678777 89988
No 102
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=33.47 E-value=2.4e+02 Score=24.58 Aligned_cols=107 Identities=10% Similarity=0.162 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH---ccCcEEEEcC-CCCCCC
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA---DTKGAFVQPA-LYEAFG 681 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la---~~aDvfV~PS-~~EgfG 681 (867)
.+++|+.+.+ ...+.+....++.+. .|.... +..+....+. ...|+++.-. ..+.-|
T Consensus 4 ~~ilivdd~~-----------~~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g 64 (143)
T 3jte_A 4 AKILVIDDES-----------TILQNIKFLLEIDGN--EVLTAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSG 64 (143)
T ss_dssp CEEEEECSCH-----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCH
T ss_pred CEEEEEcCCH-----------HHHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcH
Confidence 5677887653 235566777776653 343322 2456666665 2367776643 345567
Q ss_pred HHHHHHHHc---CCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 682 LTVIEAMNC---GLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 682 ltvlEAMa~---GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+.+++.+.. .+|+|.- .... ..+.+..|..+|+..|.+.+++..+|..++
T Consensus 65 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp HHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 777666543 6777764 3322 234456788999999999999999998887
No 103
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=33.45 E-value=40 Score=35.42 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=26.6
Q ss_pred cceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEec
Q 002909 280 MFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTR 341 (867)
Q Consensus 280 ~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~ 341 (867)
.|||+||..| | +.++.. .+|.+...+.|.++||+|+ ++--
T Consensus 22 ~MKiLII~aH--P---------~~~S~n-------~aL~~~~~~~l~~~G~eV~----v~DL 61 (280)
T 4gi5_A 22 SMKVLLIYAH--P---------EPRSLN-------GALKNFAIRHLQQAGHEVQ----VSDL 61 (280)
T ss_dssp CCEEEEEECC--S---------CTTSHH-------HHHHHHHHHHHHHTTCEEE----EEET
T ss_pred CCeEEEEEeC--C---------CCccHH-------HHHHHHHHHHHHHCCCeEE----EEEc
Confidence 4899999755 3 333332 2334467778999999999 6653
No 104
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.19 E-value=2.3e+02 Score=24.22 Aligned_cols=108 Identities=8% Similarity=0.071 Sum_probs=64.3
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc--cCcEEEEcCC-CC-CC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD--TKGAFVQPAL-YE-AF 680 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~--~aDvfV~PS~-~E-gf 680 (867)
..+++|+.+.+. ..+.+.......+. .|.... +..+....+.. ..|+++.-.. .+ .-
T Consensus 5 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~ 65 (132)
T 2rdm_A 5 AVTILLADDEAI-----------LLLDFESTLTDAGF--LVTAVS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPD 65 (132)
T ss_dssp SCEEEEECSSHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCCEEEEESCCSSSSC
T ss_pred CceEEEEcCcHH-----------HHHHHHHHHHHcCC--EEEEEC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCC
Confidence 467888876532 34556666666543 344322 24566666654 3577776433 33 45
Q ss_pred CHHHHHHHH---cCCCEEecCCCCccceeecC--ceEEEeCCCCHHHHHHHHHHHH
Q 002909 681 GLTVIEAMN---CGLPTFATNQGGPAEIIIDG--VSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 681 GltvlEAMa---~GlPVIat~~gG~~EiI~dg--~~G~lv~p~d~e~lA~aI~~ll 731 (867)
|+.+++.+. ..+|+|........+....+ ..|++..|-+.+++..+|..++
T Consensus 66 g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~ 121 (132)
T 2rdm_A 66 GWQVARVAREIDPNMPIVYISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLL 121 (132)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHH
Confidence 677777664 36888764322222222111 1279999999999999998876
No 105
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=32.72 E-value=1.7e+02 Score=26.45 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=47.0
Q ss_pred hHHHHHHHHc---cCcEEEEcCC-CCCCCHHHHHHHH---cCCCEEecCCCC----ccceeecCceEEEeCCCCHHHHHH
Q 002909 657 NGELYRCIAD---TKGAFVQPAL-YEAFGLTVIEAMN---CGLPTFATNQGG----PAEIIIDGVSGFHIDPNNGDESSN 725 (867)
Q Consensus 657 ~~el~~~la~---~aDvfV~PS~-~EgfGltvlEAMa---~GlPVIat~~gG----~~EiI~dg~~G~lv~p~d~e~lA~ 725 (867)
..+....+.. ..|++++-.. .+.-|+.+++.+. ..+|+|...... ..+.+..|..+|+..|.+.+++.+
T Consensus 70 ~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 149 (157)
T 3hzh_A 70 GEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQ 149 (157)
T ss_dssp HHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 3455555443 2366665432 3445666666554 367887743322 223445688999999999999999
Q ss_pred HHHHHH
Q 002909 726 KIADFF 731 (867)
Q Consensus 726 aI~~ll 731 (867)
+|..++
T Consensus 150 ~i~~~l 155 (157)
T 3hzh_A 150 RVMSVF 155 (157)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 987665
No 106
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=32.05 E-value=45 Score=34.66 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=23.7
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
|+|||++|..|- ..+|... +|.+.+++.|.+.|++|+
T Consensus 1 ~MmkiLiI~gSp-----------r~~s~t~-------~la~~~~~~l~~~g~eV~ 37 (273)
T 1d4a_A 1 VGRRALIVLAHS-----------ERTSFNY-------AMKEAAAAALKKKGWEVV 37 (273)
T ss_dssp CCCEEEEEECCS-----------CTTSHHH-------HHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEeCC-----------CCccHHH-------HHHHHHHHHHHhCCCeEE
Confidence 357999997442 3334322 333466678888999998
No 107
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=31.82 E-value=24 Score=36.80 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.|++.|.++|++|. ++++.
T Consensus 17 ~l~~~L~~~g~~V~----~~~r~ 35 (311)
T 3m2p_A 17 YVVESIKNDGNTPI----ILTRS 35 (311)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHhCCCEEE----EEeCC
Confidence 46668888999998 88885
No 108
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=31.02 E-value=1.3e+02 Score=24.95 Aligned_cols=106 Identities=5% Similarity=0.036 Sum_probs=63.4
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCHHH
Q 002909 607 NLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGLTV 684 (867)
Q Consensus 607 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGltv 684 (867)
+++|+.+.+ ...+.+....+..|. +|.... +..+....+.. ..|+++.-.. .+.-|+.+
T Consensus 3 ~iliv~~~~-----------~~~~~l~~~l~~~g~--~v~~~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~ 63 (119)
T 2j48_A 3 HILLLEEED-----------EAATVVCEMLTAAGF--KVIWLV------DGSTALDQLDLLQPIVILMAWPPPDQSCLLL 63 (119)
T ss_dssp EEEEECCCH-----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHH
T ss_pred EEEEEeCCH-----------HHHHHHHHHHHhCCc--EEEEec------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 566776653 234556666666554 344332 23444544432 3577665433 34456777
Q ss_pred HHHHH-----cCCCEEec-CCCCccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 685 IEAMN-----CGLPTFAT-NQGGPAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 685 lEAMa-----~GlPVIat-~~gG~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
++.+. .++|+|.. ......+....|..+++..|.+.+++...|..++
T Consensus 64 ~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 64 LQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HHHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred HHHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 77775 46787764 3322225556678899999999999988886543
No 109
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=30.32 E-value=41 Score=32.52 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 278 PNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 278 pm~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
|..|||+|=|.|.-+ .|-+.+.+.|.++||+|.
T Consensus 19 ~~~MkIaIgsDhaG~-----------------------~lK~~i~~~L~~~G~eV~ 51 (166)
T 3s5p_A 19 PGSMKVAFASDHGGR-----------------------DLRMFLQQRASAHGYEVM 51 (166)
T ss_dssp CTTCEEEEEECGGGH-----------------------HHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEEEECchHH-----------------------HHHHHHHHHHHHCCCEEE
Confidence 455899999987643 233467778999999998
No 110
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=30.04 E-value=2.6e+02 Score=23.79 Aligned_cols=109 Identities=14% Similarity=0.237 Sum_probs=67.2
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
..+++|+.+.+ .....+....+..+. ..|.... +..+....+.. ..|+++.=.. .+.-|+
T Consensus 4 ~~~ilivdd~~-----------~~~~~l~~~l~~~~~-~~v~~~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~ 65 (128)
T 1jbe_A 4 ELKFLVVDDFS-----------TMRRIVRNLLKELGF-NNVEEAE------DGVDALNKLQAGGYGFVISDWNMPNMDGL 65 (128)
T ss_dssp TCCEEEECSCH-----------HHHHHHHHHHHHTTC-CCEEEES------SHHHHHHHHTTCCCCEEEEESCCSSSCHH
T ss_pred ccEEEEECCCH-----------HHHHHHHHHHHHcCC-cEEEeeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 45677777653 234556666666553 2344332 23455665543 2477765332 344677
Q ss_pred HHHHHHHc-----CCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMNC-----GLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa~-----GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+.. .+|+|.. .... ..+.+..|..+|+..|.+.+++..+|..++
T Consensus 66 ~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 66 ELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp HHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 88888764 5677764 3322 233445688999999999999999998776
No 111
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=29.78 E-value=52 Score=29.43 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=29.3
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecC
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
|+|||+.|+... +|=.-.|+- +++|++ .-+++||++. |-|..
T Consensus 1 m~mkivaVtaCp------------tGiAhTymA--AeaLek----aA~~~G~~ik----VEtqg 42 (106)
T 2m1z_A 1 MKRKIIAVTACA------------TGVAHTYMA--AQALKK----GAKKMGNLIK----VETQG 42 (106)
T ss_dssp CCCEEEEEEECS------------SCHHHHHHH--HHHHHH----HHHHHTCEEE----EEEEE
T ss_pred CCccEEEEEECC------------CcHHHHHHH--HHHHHH----HHHHCCCEEE----EEEec
Confidence 568999996432 455556654 666665 6778999999 87763
No 112
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=29.44 E-value=26 Score=34.89 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHccCcEEEEcCCCCCCCH--HHHHHHHcCCCEEecCCCC-cccee----ecC------ceEEEeCCCCHHHHHHHH
Q 002909 661 YRCIADTKGAFVQPALYEAFGL--TVIEAMNCGLPTFATNQGG-PAEII----IDG------VSGFHIDPNNGDESSNKI 727 (867)
Q Consensus 661 ~~~la~~aDvfV~PS~~EgfGl--tvlEAMa~GlPVIat~~gG-~~EiI----~dg------~~G~lv~p~d~e~lA~aI 727 (867)
-+.+...+|+||.-. -++|. .+.||+..|+||++-+..| ..+.+ .+| ....+.-.+|++++.+.|
T Consensus 112 k~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l 189 (195)
T 1rcu_A 112 SFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQII 189 (195)
T ss_dssp HHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHH
T ss_pred HHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHH
Confidence 445555688776532 34554 5789999999999986543 32222 111 111222235888888877
Q ss_pred HHH
Q 002909 728 ADF 730 (867)
Q Consensus 728 ~~l 730 (867)
.++
T Consensus 190 ~~~ 192 (195)
T 1rcu_A 190 EQI 192 (195)
T ss_dssp HTC
T ss_pred HHH
Confidence 543
No 113
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=29.17 E-value=56 Score=34.32 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=31.9
Q ss_pred HhhcCCChhhHHHHHhcCCCcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 260 EALQAPDAAKLQVLFSRLPNMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 260 ~~~~~p~~~~l~~f~~r~pm~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
+.++.|+...|.. ..++|||++|+. +|..+|....+. +.+++.+.+.|++|+
T Consensus 42 ~~~~~~~~~~~~~----~~~~mKILiI~G-----------S~R~~S~T~~La-------~~~~~~l~~~G~eve 93 (279)
T 2fzv_A 42 SFAIERPALGLAP----DAPPVRILLLYG-----------SLRARSFSRLAV-------EEAARLLQFFGAETR 93 (279)
T ss_dssp TTCCSCTTTTTSC----CCSCCEEEEEES-----------CCSSSCHHHHHH-------HHHHHHHHHTTCEEE
T ss_pred HHcCCCChhhccC----CCCCCEEEEEEe-----------CCCCCCHHHHHH-------HHHHHHHhhCCCEEE
Confidence 4456666665531 145689999973 333455543333 356667778899998
No 114
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=28.59 E-value=2.9e+02 Score=23.90 Aligned_cols=110 Identities=8% Similarity=0.088 Sum_probs=68.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHH-cCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEK-YQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFG 681 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~-~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfG 681 (867)
..+++|+.+.+. ....+....++ .+. ..|.... +..+....+.. ..|+++.-.. .+.-|
T Consensus 8 ~~~iLivdd~~~-----------~~~~l~~~L~~~~~~-~~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 69 (143)
T 3cnb_A 8 DFSILIIEDDKE-----------FADMLTQFLENLFPY-AKIKIAY------NPFDAGDLLHTVKPDVVMLDLMMVGMDG 69 (143)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHHCTT-CEEEEEC------SHHHHHHHHHHTCCSEEEEETTCTTSCH
T ss_pred CceEEEEECCHH-----------HHHHHHHHHHhccCc-cEEEEEC------CHHHHHHHHHhcCCCEEEEecccCCCcH
Confidence 467888876532 34556666666 443 1144433 23455554433 3577766433 34467
Q ss_pred HHHHHHHHc-----CCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 682 LTVIEAMNC-----GLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 682 ltvlEAMa~-----GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
+.+++.+.. .+|+|.. ..... .+.+..|..+++..|.+.+++..+|..+++
T Consensus 70 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 70 FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 777877765 5777764 33322 334456889999999999999999988773
No 115
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=28.57 E-value=2.1e+02 Score=24.77 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-C-----C
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-Y-----E 678 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~-----E 678 (867)
.+++|+.+.+. ....+....++.+. .|.... +..+....+.. ..|++++-.. . +
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKG-----------VLTAVQLLLKNHFS--KVITLS------SPVSLSTVLREENPEVVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTTTSS--EEEEEC------CHHHHHHHHHHSCEEEEEEETTTTC-----
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCC
Confidence 56777776532 34455555555433 344322 23455555543 2466665432 2 4
Q ss_pred CCCHHHHHHHH---cCCCEEecC-CCC---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 679 AFGLTVIEAMN---CGLPTFATN-QGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 679 gfGltvlEAMa---~GlPVIat~-~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.-|+.+++.+. ..+|+|... ... ..+.+..|..+++..|.+.+++..+|..++
T Consensus 65 ~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 65 NEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 45666666654 478887743 222 233445688999999999999999998877
No 116
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=28.41 E-value=2.5e+02 Score=29.36 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=25.9
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCC
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIP 344 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~ 344 (867)
|||++....|+. .-| +. .|.+.|++.| +|. |+++...
T Consensus 1 M~ILlTNDDGi~----------ApG----i~--------aL~~aL~~~g-~V~----VVAP~~~ 37 (280)
T 1l5x_A 1 MKILVTNDDGVH----------SPG----LR--------LLYQFALSLG-DVD----VVAPESP 37 (280)
T ss_dssp CEEEEECSSCTT----------CHH----HH--------HHHHHHGGGS-EEE----EEEESSC
T ss_pred CeEEEEcCCCCC----------cHh----HH--------HHHHHHHhCC-CEE----EEecCCC
Confidence 799999988874 233 33 3555777778 888 9998643
No 117
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=27.86 E-value=32 Score=33.18 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=23.0
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
|||+|-|.|.- . .|-+.|.+.|.++||+|.
T Consensus 4 MkIaigsDhaG--------------~---------~lK~~i~~~L~~~G~eV~ 33 (162)
T 2vvp_A 4 MRVYLGADHAG--------------Y---------ELKQRIIEHLKQTGHEPI 33 (162)
T ss_dssp CEEEEEECHHH--------------H---------HHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCchh--------------H---------HHHHHHHHHHHHCCCEEE
Confidence 79999997753 2 233467789999999998
No 118
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=27.16 E-value=42 Score=31.91 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.6
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
|||+|-|.|.-+ .|-+.|.+.|.++||+|.
T Consensus 2 MkIaigsDhaG~-----------------------~lK~~i~~~L~~~G~eV~ 31 (149)
T 2vvr_A 2 KKIAFGCDHVGF-----------------------ILKHEIVAHLVERGVEVI 31 (149)
T ss_dssp CEEEEEECTTGG-----------------------GGHHHHHHHHHHTTCEEE
T ss_pred cEEEEEeCchhH-----------------------HHHHHHHHHHHHCCCEEE
Confidence 799999987643 122357778999999998
No 119
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.86 E-value=3.1e+02 Score=23.66 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=67.5
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
..+++|+.+... ..+.+....++.+ -.|.... +..+....+.. ..|+++.-.. .+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~~--~~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (137)
T 3hdg_A 7 ALKILIVEDDTD-----------AREWLSTIISNHF--PEVWSAG------DGEEGERLFGLHAPDVIITDIRMPKLGGL 67 (137)
T ss_dssp CCCEEEECSCHH-----------HHHHHHHHHHTTC--SCEEEES------SHHHHHHHHHHHCCSEEEECSSCSSSCHH
T ss_pred ccEEEEEeCCHH-----------HHHHHHHHHHhcC--cEEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCCCHH
Confidence 467888877532 3455666666532 2354433 23455554432 3577776433 455677
Q ss_pred HHHHHHHc---CCCEEecCCCCc----cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMNC---GLPTFATNQGGP----AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa~---GlPVIat~~gG~----~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+.. .+|+|......- .+.+..|..+++..|-+.+++.++|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 68 EMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 77776654 577776533222 23456688999999999999999998887
No 120
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.70 E-value=2.9e+02 Score=23.40 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=66.7
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCHH
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGLT 683 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGlt 683 (867)
.+++|+.+.. ...+.+....++.|. .|.... +..+....+.. ..|+++.=. ..+.-|+.
T Consensus 4 ~~ilivdd~~-----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~ 64 (127)
T 3i42_A 4 QQALIVEDYQ-----------AAAETFKELLEMLGF--QADYVM------SGTDALHAMSTRGYDAVFIDLNLPDTSGLA 64 (127)
T ss_dssp EEEEEECSCH-----------HHHHHHHHHHHHTTE--EEEEES------SHHHHHHHHHHSCCSEEEEESBCSSSBHHH
T ss_pred ceEEEEcCCH-----------HHHHHHHHHHHHcCC--CEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 5677777653 235566777777654 344332 24555555543 357766643 34556777
Q ss_pred HHHHHHc-----CCCEEecC-CCCc--cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 684 VIEAMNC-----GLPTFATN-QGGP--AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 684 vlEAMa~-----GlPVIat~-~gG~--~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+++.+.. .+|+|... .... .+.+..|..+|+..|-+.+++.+++....
T Consensus 65 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 65 LVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp HHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 7777653 47777642 2222 33445678899999999999999997654
No 121
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.36 E-value=2.6e+02 Score=24.86 Aligned_cols=109 Identities=7% Similarity=0.003 Sum_probs=65.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHc-CCCCcEEEcccccCCCChHHHHHHHHc--cCcEEEEcCC-CCCC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKY-QLQGQFRWIAAQTDRYRNGELYRCIAD--TKGAFVQPAL-YEAF 680 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~-~L~~~V~flG~~~d~v~~~el~~~la~--~aDvfV~PS~-~Egf 680 (867)
..+++|+.+.+ .....+....++. +. ..|.... +..+....+.. ..|+++.-.. .+.-
T Consensus 3 ~~~iLivdd~~-----------~~~~~l~~~L~~~~g~-~~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~ 64 (154)
T 2qsj_A 3 LTVVLIVDDHH-----------LIRAGAKNLLEGAFSG-MRVEGAE------TVSDALAFLEADNTVDLILLDVNLPDAE 64 (154)
T ss_dssp CEEEEEECSCH-----------HHHHHHHHHHHHHCTT-EEEEEES------SHHHHHHHHHTTCCCSEEEECC------
T ss_pred ccEEEEEcCCH-----------HHHHHHHHHHHhCCCc-eEEEEec------CHHHHHHHHhccCCCCEEEEeCCCCCCc
Confidence 36778887653 2345666666665 32 1333332 24566666653 3678776433 3345
Q ss_pred CHHHHHHHH---cCCCEEecCCCC----ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 681 GLTVIEAMN---CGLPTFATNQGG----PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 681 GltvlEAMa---~GlPVIat~~gG----~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
|+.+++.+. .++|+|...... ..+.+..|..|++..|.+.+++..+|..++
T Consensus 65 g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~ 122 (154)
T 2qsj_A 65 AIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLIL 122 (154)
T ss_dssp CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHH
Confidence 777777665 367887743222 233445688899999999999999998877
No 122
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=26.04 E-value=50 Score=40.94 Aligned_cols=79 Identities=13% Similarity=0.286 Sum_probs=55.1
Q ss_pred chhhhhhhhhccccCCc------hhhHHHHHHHHhcccCCceeeccCcCC---------CH---------HHHHHHHHHH
Q 002909 160 GVNYVSKFMSTRLSANS------EKAKQFLDYLLALNHRGEQLMINDTLD---------TV---------DKLQAALIAA 215 (867)
Q Consensus 160 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------~~~~~~~~~~ 215 (867)
|||.|.++|-+|+|.+. +.++.-.+.|+.|.+.|+.--+..-|. |+ .+...-+..|
T Consensus 6 giQmLS~~Lh~QiF~~~~~~~~~~~v~~s~~hL~~H~L~gk~t~~~p~v~~~LP~L~G~nldEHF~~lg~~~s~PYl~~a 85 (1172)
T 3ikm_A 6 DIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPLPDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAA 85 (1172)
T ss_dssp SSSCCCSSHHHHSCSSCCCCCTHHHHHHHHHTTTTTTCCSSSCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHhhCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcCCCcCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 89999999999999642 455666688999999998754443332 11 2333456777
Q ss_pred HHHhccCCCCCChhHHHHHHhhcCCccccCC
Q 002909 216 EVSISDLPKDTPYQEFQQRFKEWGFEKGWGN 246 (867)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (867)
.+++..-.|..| ++|=|.+||-.
T Consensus 86 ~~~~~~~lP~~P--------~~W~~~~GWTr 108 (1172)
T 3ikm_A 86 NLLLQAQLPPKP--------PAWAWAEGWTR 108 (1172)
T ss_dssp HHHHHCCCCCCC--------CSCCCSSCCCC
T ss_pred HHHHhcCCCCCC--------cCccccCCeee
Confidence 777765445556 68999999943
No 123
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=26.02 E-value=1e+02 Score=29.98 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=30.9
Q ss_pred ceEEEEccCccCCcccccCC-C-CcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEec
Q 002909 281 FNVVIFSPHGYFGQADVLGL-P-DTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTR 341 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~-p-dtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~ 341 (867)
|+|+|=-.||... +|. + ..||. +=.|....+...|.+.|.+.|++|. +++||
T Consensus 2 m~IviDpGHGG~D----~G~~~ga~g~~--~Ekdi~l~ia~~l~~~L~~~G~~V~---v~ltR 55 (180)
T 3qay_A 2 MKICITVGHSILK----SGACTSADGVV--NEYQYNKSLAPVLADTFRKEGHKVD---VIICP 55 (180)
T ss_dssp CEEEEEECCCBCT----TSCBCSCBSSS--BHHHHHHHHHHHHHHHHHHTTCEEE---EECCC
T ss_pred eEEEEECCCCCCC----CCCcCCCCCCc--cHHHHHHHHHHHHHHHHHhcCCcce---EEECC
Confidence 7899988898532 232 1 13442 2223333444477779999999984 15676
No 124
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=25.98 E-value=1.4e+02 Score=29.17 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=15.1
Q ss_pred HHHHHHHHCCCceeeccEEEec
Q 002909 320 ELLLRIKQQGLSVKPQILVVTR 341 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~ 341 (867)
.+++.|.++||+|. ++.+
T Consensus 14 ~la~~L~~~g~~v~----vid~ 31 (218)
T 3l4b_C 14 YLARSMLSRKYGVV----IINK 31 (218)
T ss_dssp HHHHHHHHTTCCEE----EEES
T ss_pred HHHHHHHhCCCeEE----EEEC
Confidence 56778888999999 8886
No 125
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=25.87 E-value=36 Score=33.08 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.+++.|.++||+|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (221)
T 3ew7_A 15 RILEEAKNRGHEVT----AIVRN 33 (221)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHhCCCEEE----EEEcC
Confidence 45568888999998 88884
No 126
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.64 E-value=69 Score=32.85 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=29.1
Q ss_pred cCCChhhHHHHHhcCC-CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 263 QAPDAAKLQVLFSRLP-NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 263 ~~p~~~~l~~f~~r~p-m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
..|++..+ -...+ ++|||++|+. +|..+|....+. +.+++.+.+.|++|+
T Consensus 19 ~~~~~~~~---~~~~~~~~mkIliI~G-----------S~r~~s~t~~La-------~~~~~~l~~~g~eve 69 (247)
T 2q62_A 19 RLPDSASL---RPAFSTHRPRILILYG-----------SLRTVSYSRLLA-------EEARRLLEFFGAEVK 69 (247)
T ss_dssp CCCCGGGG---CCCCCCSCCEEEEEEC-----------CCCSSCHHHHHH-------HHHHHHHHHTTCEEE
T ss_pred CCCChhhh---hhhccCCCCeEEEEEc-----------cCCCCCHHHHHH-------HHHHHHHhhCCCEEE
Confidence 34444444 34444 3589999973 233455433333 255667778899988
No 127
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.64 E-value=1.9e+02 Score=25.30 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=67.8
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHH-cCCCCcEEEcccccCCCChHHHHHHHHc--cCcEEEEcCCC--CC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEK-YQLQGQFRWIAAQTDRYRNGELYRCIAD--TKGAFVQPALY--EA 679 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~-~~L~~~V~flG~~~d~v~~~el~~~la~--~aDvfV~PS~~--Eg 679 (867)
..+++|+.+.+ .....+..+.++ .+. .|.... +..+....+.. ..|+++.-... +.
T Consensus 4 ~~~ilivdd~~-----------~~~~~l~~~L~~~~~~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~ 64 (140)
T 3lua_A 4 DGTVLLIDYFE-----------YEREKTKIIFDNIGEY--DFIEVE------NLKKFYSIFKDLDSITLIIMDIAFPVEK 64 (140)
T ss_dssp CCEEEEECSCH-----------HHHHHHHHHHHHHCCC--EEEEEC------SHHHHHTTTTTCCCCSEEEECSCSSSHH
T ss_pred CCeEEEEeCCH-----------HHHHHHHHHHHhccCc--cEEEEC------CHHHHHHHHhcCCCCcEEEEeCCCCCCC
Confidence 35677777653 234556666666 443 344322 23455555433 35777765432 33
Q ss_pred CCHHHHHHHHc-----CCCEEecCCCC----ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 680 FGLTVIEAMNC-----GLPTFATNQGG----PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 680 fGltvlEAMa~-----GlPVIat~~gG----~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
-|+.+++.+.. .+|+|.-.... ..+.+..|..+|+..|.+.+++.++|..++
T Consensus 65 ~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 65 EGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 56777776654 78888753322 223445688999999999999999998887
No 128
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.48 E-value=3.3e+02 Score=23.63 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCHH
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGLT 683 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGlt 683 (867)
.+++|+.+.+ .....+..+.++.|. .|.... +..+....+.. ..|++++=. ..+.-|+.
T Consensus 5 ~~iLivdd~~-----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~ 65 (136)
T 3t6k_A 5 HTLLIVDDDD-----------TVAEMLELVLRGAGY--EVRRAA------SGEEALQQIYKNLPDALICDVLLPGIDGYT 65 (136)
T ss_dssp CEEEEECSCH-----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH
T ss_pred CEEEEEeCCH-----------HHHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 5677776653 234556666666553 343322 23455555433 357777643 23456777
Q ss_pred HHHHHHc-----CCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHHH
Q 002909 684 VIEAMNC-----GLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFFE 732 (867)
Q Consensus 684 vlEAMa~-----GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~ 732 (867)
+++.+.. .+|+|.. ..+.. .+.+..|..+|+..|.+.+++..+|..++.
T Consensus 66 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 66 LCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp HHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHh
Confidence 7777743 6788764 33322 233456889999999999999999988873
No 129
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=25.06 E-value=2.2e+02 Score=28.50 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.++++|+++|++|. ++.+.
T Consensus 22 aia~~l~~~G~~V~----~~~r~ 40 (257)
T 3tpc_A 22 AVTRMLAQEGATVL----GLDLK 40 (257)
T ss_dssp HHHHHHHHTTCEEE----EEESS
T ss_pred HHHHHHHHCCCEEE----EEeCC
Confidence 56678999999887 77774
No 130
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=24.70 E-value=42 Score=32.87 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=24.3
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHH--CCCcee
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQ--QGLSVK 333 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~--~GheV~ 333 (867)
|.|||+|=|.|.-+ .|-+.+.+.|.+ +||+|.
T Consensus 21 M~MkIaIgsDhaG~-----------------------~lK~~i~~~L~~~~~G~eV~ 54 (179)
T 3k7p_A 21 MTRRVAIGTDHPAF-----------------------AIHENLILYVKEAGDEFVPV 54 (179)
T ss_dssp CCEEEEEEECTGGG-----------------------GGHHHHHHHHHHTCTTEEEE
T ss_pred CceEEEEEECchHH-----------------------HHHHHHHHHHHhcCCCCeEE
Confidence 67899999988643 122367778999 999998
No 131
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=24.46 E-value=3.2e+02 Score=23.12 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
+.+++|+.+.+. ..+.+....+..+. .+.... +..+....+.. ..|+++.=.. ...-|+
T Consensus 3 ~~~ilivdd~~~-----------~~~~l~~~l~~~~~--~v~~~~------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~ 63 (126)
T 1dbw_A 3 DYTVHIVDDEEP-----------VRKSLAFMLTMNGF--AVKMHQ------SAEAFLAFAPDVRNGVLVTDLRMPDMSGV 63 (126)
T ss_dssp CCEEEEEESSHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHGGGCCSEEEEEECCSTTSCHH
T ss_pred CCEEEEEcCCHH-----------HHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHhcCCCCEEEEECCCCCCCHH
Confidence 356788877642 34556666666543 343322 23455655543 2467665322 334567
Q ss_pred HHHHHHH---cCCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMN---CGLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa---~GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+. ..+|+|.. .... ..+.+..|..||+..|.+.+++.++|..++
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (126)
T 1dbw_A 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119 (126)
T ss_dssp HHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 7777664 36788764 3332 233445688999999999999999997765
No 132
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=24.40 E-value=3e+02 Score=24.23 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGl 682 (867)
..+++||.+.+. ....+..+.++.|. .+.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 14 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~mp~~~g~ 74 (143)
T 3m6m_D 14 SMRMLVADDHEA-----------NRMVLQRLLEKAGH--KVLCVN------GAEQVLDAMAEEDYDAVIVDLHMPGMNGL 74 (143)
T ss_dssp -CEEEEECSSHH-----------HHHHHHHHHHC--C--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHH
T ss_pred cceEEEEeCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Confidence 467888876532 34556666665542 343322 23455555432 357777633 2355677
Q ss_pred HHHHHHH-------cCCCEEecCCCCcc----ceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMN-------CGLPTFATNQGGPA----EIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa-------~GlPVIat~~gG~~----EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+. ..+|+|........ +....|..+|+..|-+.+++.++|..+.
T Consensus 75 ~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 75 DMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 7777774 23688775333222 3345688999999999999999997765
No 133
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=24.39 E-value=2.3e+02 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=25.2
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEecCCC
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTRLIP 344 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~~~~ 344 (867)
|||++....|+. .-|. . .|.+.|++.| +|. |+++...
T Consensus 2 M~ILlTNDDGi~----------apGi----~--------aL~~~L~~~g-~V~----VVAP~~~ 38 (254)
T 2v4n_A 2 MRILLSNDDGVH----------APGI----Q--------TLAKALREFA-DVQ----VVAPDRN 38 (254)
T ss_dssp CEEEEECSSCTT----------CHHH----H--------HHHHHHTTTS-EEE----EEEESSC
T ss_pred CeEEEEcCCCCC----------CHHH----H--------HHHHHHHhCC-cEE----EEeeCCC
Confidence 799999988874 2233 3 3445666666 888 9998643
No 134
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=24.28 E-value=40 Score=32.93 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (224)
T 3h2s_A 15 AIVAEARRRGHEVL----AVVRD 33 (224)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHHCCCEEE----EEEec
Confidence 45668888999998 88884
No 135
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=24.25 E-value=3.4e+02 Score=23.30 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=68.4
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHcc--CcEEEEcC-CCCCCC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADT--KGAFVQPA-LYEAFG 681 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~--aDvfV~PS-~~EgfG 681 (867)
..+++|+.+.+ ...+.+....++.+. .|.... +..+....+... .|+++.=. ..+.-|
T Consensus 7 ~~~ilivdd~~-----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g 67 (136)
T 3hdv_A 7 RPLVLVVDDNA-----------VNREALILYLKSRGI--DAVGAD------GAEEARLYLHYQKRIGLMITDLRMQPESG 67 (136)
T ss_dssp CCEEEEECSCH-----------HHHHHHHHHHHHTTC--CEEEES------SHHHHHHHHHHCTTEEEEEECSCCSSSCH
T ss_pred CCeEEEECCCH-----------HHHHHHHHHHHHcCc--eEEEeC------CHHHHHHHHHhCCCCcEEEEeccCCCCCH
Confidence 46788887753 235566777777654 344322 234555555432 46666543 345567
Q ss_pred HHHHHHHHc----CCCEEecCC-CC---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 682 LTVIEAMNC----GLPTFATNQ-GG---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 682 ltvlEAMa~----GlPVIat~~-gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+.+++.+.. .+|+|.... .. ..+.+..|..+++..|.+.+++..+|.+++
T Consensus 68 ~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 68 LDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 888887754 367776433 22 233445688999999999999999998776
No 136
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.09 E-value=3.2e+02 Score=22.87 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=66.1
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-C-CCCCH
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-Y-EAFGL 682 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~-EgfGl 682 (867)
.+++|+.+.+ ...+.+....++.|. +|.... +..+....+.. ..|+++.-.. . ..-|+
T Consensus 6 ~~ilivdd~~-----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~ 66 (127)
T 2gkg_A 6 KKILIVESDT-----------ALSATLRSALEGRGF--TVDETT------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGY 66 (127)
T ss_dssp CEEEEECSCH-----------HHHHHHHHHHHHHTC--EEEEEC------CHHHHHHHHHHHCCSEEEEESBCGGGCBHH
T ss_pred CeEEEEeCCH-----------HHHHHHHHHHHhcCc--eEEEec------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHH
Confidence 4677777653 234556666666554 344322 23455554432 3577766433 2 44577
Q ss_pred HHHHHHH-----cCCCEEecCCCCc----cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMN-----CGLPTFATNQGGP----AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa-----~GlPVIat~~gG~----~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+. ..+|+|.. .... .+.+..|..+++..|.+.+++...|..++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 67 LICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp HHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 7777774 46888887 3322 23445678899999999999999998776
No 137
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.91 E-value=81 Score=24.71 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.9
Q ss_pred cCCCCCChhHHHHHHhhcCC
Q 002909 221 DLPKDTPYQEFQQRFKEWGF 240 (867)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~ 240 (867)
..++++=|..--..|++|||
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF 21 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGF 21 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTC
T ss_pred CCCHHHhhHHHHHHHHHcCC
Confidence 46788888877779999999
No 138
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=23.84 E-value=3.5e+02 Score=23.26 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCHH
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGLT 683 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGlt 683 (867)
.+++|+.+.+. ....+....+..+. .|.... +..+....+.. ..|+++.=.. ...-|+.
T Consensus 4 ~~Ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~l~~~~g~~ 64 (132)
T 3crn_A 4 KRILIVDDDTA-----------ILDSTKQILEFEGY--EVEIAA------TAGEGLAKIENEFFNLALFXIKLPDMEGTE 64 (132)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEECSBCSSSBHHH
T ss_pred cEEEEEeCCHH-----------HHHHHHHHHHHCCc--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCchHH
Confidence 46777776532 34556666665543 344322 23455554432 3577776433 2345677
Q ss_pred HHHHHH---cCCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 684 VIEAMN---CGLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 684 vlEAMa---~GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+++.+. .++|+|.- ..... .+.+..|..||+..|.+.+++..+|..++
T Consensus 65 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 65 LLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp HHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHH
Confidence 776664 36777763 33322 33445688999999999999999997766
No 139
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=23.65 E-value=65 Score=32.54 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=25.1
Q ss_pred ceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEec
Q 002909 281 FNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTR 341 (867)
Q Consensus 281 ~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~ 341 (867)
|||++|+.| |..+|....+ .+.+++.+.++||+|+ ++.-
T Consensus 2 mkiLiI~gs-----------pr~~S~t~~l-------~~~~~~~l~~~g~ev~----~~dL 40 (228)
T 3tem_A 2 KKVLIVYAH-----------QEPKSFNGSL-------KNVAVDELSRQGCTVT----VSDL 40 (228)
T ss_dssp CEEEEEECC-----------SCTTSHHHHH-------HHHHHHHHHHHTCEEE----EEET
T ss_pred CEEEEEEeC-----------CCCCCHHHHH-------HHHHHHHHHHCCCEEE----EEEh
Confidence 799999744 2344443333 3356667888899999 6654
No 140
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.64 E-value=3.4e+02 Score=23.09 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=65.2
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH-ccCcEEEEcC-CCCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA-DTKGAFVQPA-LYEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la-~~aDvfV~PS-~~EgfGl 682 (867)
..+++|+.+.+. ....+....++.+. .|.... +..+....+. ...|+++.-. ..+.-|+
T Consensus 6 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 66 (132)
T 3lte_A 6 SKRILVVDDDQA-----------MAAAIERVLKRDHW--QVEIAH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGL 66 (132)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTCCSEEEEESCBTTBCHH
T ss_pred CccEEEEECCHH-----------HHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEecCCCCCCHH
Confidence 457778876532 34556666666543 344332 2345555443 3357766643 3455678
Q ss_pred HHHHHHHc-----CCCEEecCCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMNC-----GLPTFATNQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa~-----GlPVIat~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+.. ..|+|.+..... .+.+..|..+|+..|.+.+++.++|....
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 67 DVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp HHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 88888764 244554433222 23445688999999999999999997765
No 141
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.59 E-value=2.7e+02 Score=23.80 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
..+++|+.+.+. ....+..+.++.|. .+.... +..+..+.+.. ..|+++.-.. .+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (130)
T 3eod_A 7 GKQILIVEDEQV-----------FRSLLDSWFSSLGA--TTVLAA------DGVDALELLGGFTPDLMICDIAMPRMNGL 67 (130)
T ss_dssp TCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHTTCCCSEEEECCC-----CH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHH
Confidence 467888876532 34566677777653 344322 24566666643 2477776433 345677
Q ss_pred HHHHHHHc---CCCEEecC-CCCc---cceeecCceEEEeCCC-CHHHHHHHHHHHH
Q 002909 683 TVIEAMNC---GLPTFATN-QGGP---AEIIIDGVSGFHIDPN-NGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa~---GlPVIat~-~gG~---~EiI~dg~~G~lv~p~-d~e~lA~aI~~ll 731 (867)
.+++.+.. .+|+|... .... .+.+..|..+++..|. +.+.+.+.|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp HHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 77776654 57877643 2222 3345678899999998 8999999998776
No 142
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=23.50 E-value=85 Score=28.29 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=29.8
Q ss_pred CcceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCceeeccEEEec
Q 002909 279 NMFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVKPQILVVTR 341 (867)
Q Consensus 279 m~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~~~V~VvT~ 341 (867)
|+|||+.|+... +|-.-.|+- +++|++ .-+++||++. |=|.
T Consensus 4 m~mkIvaVTaCp------------tGiAHTyMA--AeaL~~----aA~~~G~~ik----VEtq 44 (111)
T 2kyr_A 4 MSKKLIALCACP------------MGLAHTFMA--AQALEE----AAVEAGYEVK----IETQ 44 (111)
T ss_dssp CCCEEEEEEEES------------SCHHHHHHH--HHHHHH----HHHHTSSEEE----EEEE
T ss_pred ccccEEEEEcCC------------CcHHHHHHH--HHHHHH----HHHHCCCeEE----EEec
Confidence 779999887532 566666654 676665 6778999999 7665
No 143
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.17 E-value=3.5e+02 Score=22.99 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=65.4
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCHHH
Q 002909 607 NLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGLTV 684 (867)
Q Consensus 607 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGltv 684 (867)
+++|+.+.+ .....+....++.|. .|.... +..+....+.. ..|+++.=. ..+.-|+.+
T Consensus 4 ~ILivdd~~-----------~~~~~l~~~l~~~g~--~v~~~~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~ 64 (122)
T 3gl9_A 4 KVLLVDDSA-----------VLRKIVSFNLKKEGY--EVIEAE------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTV 64 (122)
T ss_dssp EEEEECSCH-----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHH
T ss_pred eEEEEeCCH-----------HHHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHH
Confidence 566666543 234456666666553 343322 24566666543 247776643 235567888
Q ss_pred HHHHH-----cCCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 685 IEAMN-----CGLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 685 lEAMa-----~GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
++.+. ..+|+|.. ..+.. .+.+..|..+|+..|.+++++..+|..++
T Consensus 65 ~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 65 LKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp HHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 88774 35788764 33332 22345688999999999999999998765
No 144
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.97 E-value=3.6e+02 Score=23.14 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=67.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEE-cccccCCCChHHHHHHHHc-cCcEEEEcCCC--CCC
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRW-IAAQTDRYRNGELYRCIAD-TKGAFVQPALY--EAF 680 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~f-lG~~~d~v~~~el~~~la~-~aDvfV~PS~~--Egf 680 (867)
..+++|+.+... ..+.+....++.|. .+.. .. +..+....+.. ..|+++.-... +.-
T Consensus 9 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~ 69 (140)
T 3cg0_A 9 LPGVLIVEDGRL-----------AAATLRIQLESLGY--DVLGVFD------NGEEAVRCAPDLRPDIALVDIMLCGALD 69 (140)
T ss_dssp CCEEEEECCBHH-----------HHHHHHHHHHHHTC--EEEEEES------SHHHHHHHHHHHCCSEEEEESSCCSSSC
T ss_pred CceEEEEECCHH-----------HHHHHHHHHHHCCC--eeEEEEC------CHHHHHHHHHhCCCCEEEEecCCCCCCC
Confidence 467888877642 34556666666654 2332 22 13455554432 35777764432 345
Q ss_pred CHHHHHHHH--cCCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 681 GLTVIEAMN--CGLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 681 GltvlEAMa--~GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
|+.+++.+. .++|+|.- ..... .+.+..|..+++..|.+.+++...|..++
T Consensus 70 g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 70 GVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 666666554 57888874 33222 23445688999999999999999998877
No 145
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=22.51 E-value=1.2e+02 Score=30.71 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.+++.|+++|++|. ++.+.
T Consensus 42 aia~~l~~~G~~V~----~~~r~ 60 (260)
T 3gem_A 42 HCALRLLEHGHRVI----ISYRT 60 (260)
T ss_dssp HHHHHHHHTTCCEE----EEESS
T ss_pred HHHHHHHHCCCEEE----EEeCC
Confidence 56678999999888 87774
No 146
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.23 E-value=4.1e+02 Score=23.47 Aligned_cols=108 Identities=9% Similarity=0.116 Sum_probs=65.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGl 682 (867)
..+++|+.+.+. ....+....+..+. .|.... +..+....+.. ..|++++-.. .+.-|+
T Consensus 7 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (154)
T 2rjn_A 7 NYTVMLVDDEQP-----------ILNSLKRLIKRLGC--NIITFT------SPLDALEALKGTSVQLVISDMRMPEMGGE 67 (154)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------CHHHHHHHHTTSCCSEEEEESSCSSSCHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHH
Confidence 467888876532 34556666665543 344322 24556665543 2477766432 344566
Q ss_pred HHHHHHH---cCCCEEec-CCCC---ccceeecC-ceEEEeCCCCHHHHHHHHHHHH
Q 002909 683 TVIEAMN---CGLPTFAT-NQGG---PAEIIIDG-VSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 683 tvlEAMa---~GlPVIat-~~gG---~~EiI~dg-~~G~lv~p~d~e~lA~aI~~ll 731 (867)
.+++.+. ..+|+|.- .... ..+.+..| ..+++..|.+.+++...|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 68 VFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp HHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 6666664 36787764 3222 12233445 7899999999999999998876
No 147
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=22.23 E-value=1.8e+02 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=16.7
Q ss_pred CCCCeEEEE-CCCChHHHHHHHHHhcCCcEEEE
Q 002909 407 EGKPDLIIG-NYSDGNLVASLMASKLGITQATI 438 (867)
Q Consensus 407 ~~kPDIIh~-h~~~~~l~a~lla~~~gip~V~t 438 (867)
..+||+++. +.. +...++++..|+|..+.
T Consensus 78 ~~~~D~vid~~~~---~~sa~~~~~~~~~~~ig 107 (348)
T 1psw_A 78 EKRYDRAYVLPNS---FKSALVPLFAGIPHRTG 107 (348)
T ss_dssp TTTCSEEEECSCC---SGGGHHHHHTTCSEEEE
T ss_pred hcCCCEEEECCCC---hHHHHHHHHhCCCEEec
Confidence 358998883 332 22334556678886433
No 148
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=22.20 E-value=2.3e+02 Score=27.23 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=47.3
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHH----ccCcEEEEcCCCCCCCH
Q 002909 607 NLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIA----DTKGAFVQPALYEAFGL 682 (867)
Q Consensus 607 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la----~~aDvfV~PS~~EgfGl 682 (867)
..+|.|+..| ....++.....+++|.+-.++..+..- ..+++.++.. ..+++++.-+-.++ .|
T Consensus 6 V~Iimgs~SD---------~~v~~~a~~~l~~~gi~~ev~V~SaHR---~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~L 72 (163)
T 3ors_A 6 VAVIMGSSSD---------WKIMQESCNMLDYFEIPYEKQVVSAHR---TPKMMVQFASEARERGINIIIAGAGGAA-HL 72 (163)
T ss_dssp EEEEESCGGG---------HHHHHHHHHHHHHTTCCEEEEECCTTT---SHHHHHHHHHHTTTTTCCEEEEEEESSC-CH
T ss_pred EEEEECcHHH---------HHHHHHHHHHHHHcCCCEEEEEECCcC---CHHHHHHHHHHHHhCCCcEEEEECCchh-hh
Confidence 3556666544 234455666678888887788877432 2456666654 22678877665554 34
Q ss_pred HHHHHHHcCCCEEec
Q 002909 683 TVIEAMNCGLPTFAT 697 (867)
Q Consensus 683 tvlEAMa~GlPVIat 697 (867)
.-+=|-..-+|||+-
T Consensus 73 pgvvA~~t~~PVIgV 87 (163)
T 3ors_A 73 PGMVASLTTLPVIGV 87 (163)
T ss_dssp HHHHHHHCSSCEEEE
T ss_pred HHHHHhccCCCEEEe
Confidence 444455677888874
No 149
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=22.10 E-value=5.4e+02 Score=24.81 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=63.1
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc----cCcEEEEcCCCCCCCH
Q 002909 607 NLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD----TKGAFVQPALYEAFGL 682 (867)
Q Consensus 607 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~----~aDvfV~PS~~EgfGl 682 (867)
..+|.|+..| ....++.....+++|++-.++..+..- ..+++.+|... .++++|.-+-.++ .|
T Consensus 14 V~IimGS~SD---------~~v~~~a~~~L~~~Gi~~dv~V~SaHR---~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~L 80 (170)
T 1xmp_A 14 VGVIMGSTSD---------WETMKYACDILDELNIPYEKKVVSAHR---TPDYMFEYAETARERGLKVIIAGAGGAA-HL 80 (170)
T ss_dssp EEEEESSGGG---------HHHHHHHHHHHHHTTCCEEEEECCTTT---SHHHHHHHHHHTTTTTCCEEEEEEESSC-CH
T ss_pred EEEEECcHHH---------HHHHHHHHHHHHHcCCCEEEEEEeccC---CHHHHHHHHHHHHhCCCcEEEEECCchh-hh
Confidence 3556666544 233455556667788776777776422 24566666542 1467776655444 23
Q ss_pred HHHHHHHcCCCEEecCC-----CCcc---ceee--cCceEEEeCCC-----CHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 002909 683 TVIEAMNCGLPTFATNQ-----GGPA---EIII--DGVSGFHIDPN-----NGDESSNKIADFFEKCKTDAGYWNQMSA 746 (867)
Q Consensus 683 tvlEAMa~GlPVIat~~-----gG~~---EiI~--dg~~G~lv~p~-----d~e~lA~aI~~ll~~~~~dp~~~~~m~~ 746 (867)
.-+=|-..-+|||+-.. +|.. .+++ .|..--.+.-+ |..-+|..|.. ..|++.|+++.+
T Consensus 81 pgvvA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla-----~~d~~l~~kl~~ 154 (170)
T 1xmp_A 81 PGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILG-----SFHDDIHDALEL 154 (170)
T ss_dssp HHHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHH
T ss_pred HHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHc-----cCCHHHHHHHHH
Confidence 33334455678877533 2222 2233 23221122222 33444444443 278888887754
No 150
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=21.86 E-value=48 Score=34.75 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCceeeccEEEecC
Q 002909 320 ELLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~GheV~~~V~VvT~~ 342 (867)
.+++.|.++||+|. ++++.
T Consensus 28 ~l~~~L~~~g~~V~----~~~r~ 46 (342)
T 2x4g_A 28 HAARAIRAAGHDLV----LIHRP 46 (342)
T ss_dssp HHHHHHHHTTCEEE----EEECT
T ss_pred HHHHHHHHCCCEEE----EEecC
Confidence 45567888999998 88874
No 151
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.84 E-value=2.4e+02 Score=24.56 Aligned_cols=108 Identities=10% Similarity=0.110 Sum_probs=64.0
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCCCCCCCHH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPALYEAFGLT 683 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~~EgfGlt 683 (867)
..+++|+.+.+ .....+....++.|. .|.... +..+....+.. ..|+++.-...+.-|+.
T Consensus 4 ~~~iLivdd~~-----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~ 64 (142)
T 2qxy_A 4 TPTVMVVDESR-----------ITFLAVKNALEKDGF--NVIWAK------NEQEAFTFLRREKIDLVFVDVFEGEESLN 64 (142)
T ss_dssp CCEEEEECSCH-----------HHHHHHHHHHGGGTC--EEEEES------SHHHHHHHHTTSCCSEEEEECTTTHHHHH
T ss_pred CCeEEEEeCCH-----------HHHHHHHHHHHhCCC--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHH
Confidence 35677777653 234556666665543 344322 23455555543 24676654322334555
Q ss_pred HHHHHH---cCCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 684 VIEAMN---CGLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 684 vlEAMa---~GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+++.+. ..+|+|.- ..... .+.+..|..+++..|.+.+++...|..++
T Consensus 65 ~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 65 LIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 565553 35787764 33222 23445688899999999999999998877
No 152
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=21.79 E-value=69 Score=32.69 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=23.1
Q ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002909 710 VSGFHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIY 753 (867)
Q Consensus 710 ~~G~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~ 753 (867)
..+|+-.| +.+++-.+-. -.+||..++...+-+|+..+
T Consensus 178 ~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~r~~~~ 215 (232)
T 3dfu_A 178 AQQFQALP-SLDEVIAQYD-----SINNPGRQRLFRDLARRQAE 215 (232)
T ss_dssp HHSCCCCC-CHHHHHHHHH-----TCCSHHHHHHHHHHHHHHHH
T ss_pred ccccccCC-CHHHHHHHHh-----cccChhHHHHHHHHHHHHHh
Confidence 34555445 6665544332 23899988887777776653
No 153
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=21.63 E-value=6.1e+02 Score=25.26 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=95.4
Q ss_pred EEEEEeccCCcCChHHHHHHHHHhHccCCCeE-EEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccc---
Q 002909 576 IIFSMARLDTVKNITGLTEWYGKNKRLRNMVN-LVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQ--- 651 (867)
Q Consensus 576 iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~-LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~--- 651 (867)
+--++||-..+||+-.+.+.-.+..+ |.-+ -++-|-... + +.+ .+++-|++ ..+.|.+
T Consensus 199 inrwigrtttwkgfyqmfdfhekflk--pagkstvmeglers------p---afi-----aikekgip--yeyygnreid 260 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLK--PAGKSTVMEGLERS------P---AFI-----AIKEKGIP--YEYYGNREID 260 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTT--TTTCEEEEECCCCS------H---HHH-----HHHHTTCC--EEEECGGGGG
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcC--ccchhhhhhhhhcC------C---ceE-----EEcccCCc--hhhcCcchhh
Confidence 44689999999999999888777754 3222 334443222 1 111 13333332 2222210
Q ss_pred ------------cCCCChHHHHHHHHccCcEEEEcCC------CCCCCHHHHHHHHcCC-CEEecCCCCcccee------
Q 002909 652 ------------TDRYRNGELYRCIADTKGAFVQPAL------YEAFGLTVIEAMNCGL-PTFATNQGGPAEII------ 706 (867)
Q Consensus 652 ------------~d~v~~~el~~~la~~aDvfV~PS~------~EgfGltvlEAMa~Gl-PVIat~~gG~~EiI------ 706 (867)
.|-.-+.|+..-+.. ++..-+-|. .-..-.+-+|--|||+ ||+--..|....+-
T Consensus 261 kmnlapnqpaqildcyinsemlermsk-sgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpl 339 (401)
T 1xv5_A 261 KMNLAPNQPAQILDCYINSEMLERMSK-SGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPL 339 (401)
T ss_dssp GCCCSSSCCEEEESCCCHHHHHHHHHT-EEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBG
T ss_pred hhcCCCCCcchhhhheecHHHHHHhhh-cCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcc
Confidence 112346788888887 777777664 2456678999999996 55443333322221
Q ss_pred ecCceE-EEeCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 002909 707 IDGVSG-FHIDPNNGDESSNKIADFFEKCKTDAGYWNQMSAAGRQRIYEC 755 (867)
Q Consensus 707 ~dg~~G-~lv~p~d~e~lA~aI~~ll~~~~~dp~~~~~m~~~ar~~v~~~ 755 (867)
....+| +.++.+|-+..-+.|.++- .|..+..+-.+.|++...++
T Consensus 340 tshdsgiiwfdendmestferikels----sdralydrerekayeflyqh 385 (401)
T 1xv5_A 340 TSHDSGIIWFDENDMESTFERIKELS----SDRALYDREREKAYEFLYQH 385 (401)
T ss_dssp GGSCCSCEEECTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEecCCchHHHHHHHHHhc----cchhhhhHHHHHHHHHHHhc
Confidence 112344 4688899999999998876 89888887777777766443
No 154
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=21.53 E-value=46 Score=35.24 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.6
Q ss_pred HHHHHHHCCCceeeccEEEecC
Q 002909 321 LLLRIKQQGLSVKPQILVVTRL 342 (867)
Q Consensus 321 La~~L~~~GheV~~~V~VvT~~ 342 (867)
++..|++.||+|+ ++++.
T Consensus 17 ~a~~L~~~g~~V~----~~~r~ 34 (320)
T 3i83_A 17 YGALLAKTGHCVS----VVSRS 34 (320)
T ss_dssp HHHHHHHTTCEEE----EECST
T ss_pred HHHHHHhCCCeEE----EEeCC
Confidence 5667888999999 88873
No 155
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=21.28 E-value=3.9e+02 Score=22.92 Aligned_cols=108 Identities=10% Similarity=0.105 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHccCcEEEEcCC-CCCCCHH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPAL-YEAFGLT 683 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~~aDvfV~PS~-~EgfGlt 683 (867)
..+++|+.+.+. ....+....+..+. .|.... +..+....+....|++++=.. ...-|+.
T Consensus 7 ~~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~dlvllD~~lp~~~g~~ 67 (136)
T 1dcf_A 7 GLKVLVMDENGV-----------SRMVTKGLLVHLGC--EVTTVS------SNEECLRVVSHEHKVVFMDVCMPGVENYQ 67 (136)
T ss_dssp TCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHCCTTCSEEEEECCSSTTTTTH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHhccCCEEEEeCCCCCCcHHH
Confidence 467788876532 34556666666543 343222 235566655443477776432 3345666
Q ss_pred HHHHHHc-------CCC-EE-ecCCCCcc---ceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 684 VIEAMNC-------GLP-TF-ATNQGGPA---EIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 684 vlEAMa~-------GlP-VI-at~~gG~~---EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+++.+.. ..| +| .|...... +.+..|..||+..|-+.+++.+.|..++
T Consensus 68 ~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 127 (136)
T 1dcf_A 68 IALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLL 127 (136)
T ss_dssp HHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHh
Confidence 7776641 344 44 45444332 2445688999999999999999997766
No 156
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=21.17 E-value=3.8e+02 Score=22.67 Aligned_cols=108 Identities=11% Similarity=0.126 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcCC-CCCCCHH
Q 002909 606 VNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPAL-YEAFGLT 683 (867)
Q Consensus 606 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS~-~EgfGlt 683 (867)
.+++|+.+.+. ....+....+..+. ..|.... +..+....+.. ..|+++.=.. .+.-|+.
T Consensus 7 ~~ilivdd~~~-----------~~~~l~~~L~~~g~-~~v~~~~------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~ 68 (129)
T 1p6q_A 7 IKVLIVDDQVT-----------SRLLLGDALQQLGF-KQITAAG------DGEQGMKIMAQNPHHLVISDFNMPKMDGLG 68 (129)
T ss_dssp CCEEEECSSHH-----------HHHHHHHHHHTTTC-SCEECCS------SHHHHHHHHHTSCCSEEEECSSSCSSCHHH
T ss_pred CeEEEEcCCHH-----------HHHHHHHHHHHCCC-cEEEecC------CHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Confidence 56777776532 34456666665443 2343322 23455555543 2577776433 3445777
Q ss_pred HHHHHHc-----CCCEEec-CCCCc---cceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 684 VIEAMNC-----GLPTFAT-NQGGP---AEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 684 vlEAMa~-----GlPVIat-~~gG~---~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+++.+.. .+|+|.. ..+.. .+.+..|..+|+..|.+.+++..+|..++
T Consensus 69 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 69 LLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp HHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 8887753 5677664 33322 23445688899999999999999997765
No 157
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=21.12 E-value=56 Score=34.42 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHHHCCCceeeccEEEec
Q 002909 321 LLLRIKQQGLSVKPQILVVTR 341 (867)
Q Consensus 321 La~~L~~~GheV~~~V~VvT~ 341 (867)
++..|++.||+|+ ++++
T Consensus 17 ~a~~L~~~g~~V~----~~~r 33 (312)
T 3hn2_A 17 YGALLQRSGEDVH----FLLR 33 (312)
T ss_dssp HHHHHHHTSCCEE----EECS
T ss_pred HHHHHHHCCCeEE----EEEc
Confidence 5567888999999 8887
No 158
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=20.94 E-value=89 Score=33.20 Aligned_cols=19 Identities=21% Similarity=0.059 Sum_probs=14.4
Q ss_pred HHHHHHHHC-CCceeeccEEEecC
Q 002909 320 ELLLRIKQQ-GLSVKPQILVVTRL 342 (867)
Q Consensus 320 eLa~~L~~~-GheV~~~V~VvT~~ 342 (867)
.|+++|.++ ||+|. ++++.
T Consensus 39 ~l~~~L~~~~g~~V~----~~~r~ 58 (372)
T 3slg_A 39 HLSKRILETTDWEVF----GMDMQ 58 (372)
T ss_dssp HHHHHHHHHSSCEEE----EEESC
T ss_pred HHHHHHHhCCCCEEE----EEeCC
Confidence 355677777 99998 88874
No 159
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=20.81 E-value=4.5e+02 Score=26.03 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCC
Q 002909 393 RFAQDATAKILDLMEGKPDLIIGNYSD 419 (867)
Q Consensus 393 ~f~~~~~~~i~~~l~~kPDIIh~h~~~ 419 (867)
.|...+...+.. .+||+|.+-.+.
T Consensus 67 ~~~~~~~~~l~~---~~~Dliv~a~y~ 90 (216)
T 2ywr_A 67 EFEERMALELKK---KGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHHHHHH---TTCCEEEESSCC
T ss_pred hhhHHHHHHHHh---cCCCEEEEeCch
Confidence 344445555544 389999976543
No 160
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=20.81 E-value=5.5e+02 Score=24.46 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=68.7
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc-cCcEEEEcC-CCCCCCH
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD-TKGAFVQPA-LYEAFGL 682 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~-~aDvfV~PS-~~EgfGl 682 (867)
..+++|+.+.+. ..+.+....+..+. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~dlvllD~~l~~~~g~ 67 (233)
T 1ys7_A 7 SPRVLVVDDDSD-----------VLASLERGLRLSGF--EVATAV------DGAEALRSATENRPDAIVLDINMPVLDGV 67 (233)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEEESSCSSSCHH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHhCCC--EEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 357788877642 34556666666543 343222 23455554432 357776643 2345677
Q ss_pred HHHHHHH---cCCCEEec-CCCC---ccceeecCceEEEeCCCCHHHHHHHHHHHHHH
Q 002909 683 TVIEAMN---CGLPTFAT-NQGG---PAEIIIDGVSGFHIDPNNGDESSNKIADFFEK 733 (867)
Q Consensus 683 tvlEAMa---~GlPVIat-~~gG---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll~~ 733 (867)
.+++.+. .++|+|.- .... ..+.+..|..||+..|.+.+++..+|..++..
T Consensus 68 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 68 SVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp HHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 7777764 47888764 2222 23445668899999999999999999888754
No 161
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=20.80 E-value=75 Score=30.16 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=23.5
Q ss_pred cceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 280 MFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 280 ~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
+|||+|=|.|.-+ .|-+.+.+.|.++||+|.
T Consensus 7 ~mkI~igsDhaG~-----------------------~lK~~i~~~L~~~G~eV~ 37 (148)
T 4em8_A 7 VKRVFLSSDHAGV-----------------------ELRLFLSAYLRDLGCEVF 37 (148)
T ss_dssp CSEEEEEECGGGH-----------------------HHHHHHHHHHHHTTCEEE
T ss_pred eeEEEEEECchhH-----------------------HHHHHHHHHHHHCCCEEE
Confidence 4799999987643 233467778999999998
No 162
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=20.45 E-value=4.1e+02 Score=27.15 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=21.7
Q ss_pred CCCCeEEEE--C-C--------CChHHHHHHHHHhcCCcEEEEE
Q 002909 407 EGKPDLIIG--N-Y--------SDGNLVASLMASKLGITQATIA 439 (867)
Q Consensus 407 ~~kPDIIh~--h-~--------~~~~l~a~lla~~~gip~V~t~ 439 (867)
..+||+|++ | . ..+...|.+-+..+|+|-+-.-
T Consensus 83 ~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S 126 (251)
T 2wqk_A 83 EKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFS 126 (251)
T ss_dssp TCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEE
Confidence 358999995 2 1 1233456666778999988554
No 163
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=20.40 E-value=4.4e+02 Score=25.14 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=63.6
Q ss_pred CeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEcccccCCCChHHHHHHHHc--------------cCcE
Q 002909 605 MVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQTDRYRNGELYRCIAD--------------TKGA 670 (867)
Q Consensus 605 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~d~v~~~el~~~la~--------------~aDv 670 (867)
..+++||.+.+. ....+..+.++.+.. .|.... +..+....+.. .-|+
T Consensus 61 ~~~ILiVdDd~~-----------~~~~l~~~L~~~g~~-~v~~a~------~~~eal~~l~~~~~~~~~~~~~~~~~~dl 122 (206)
T 3mm4_A 61 GKRVLVVDDNFI-----------SRKVATGKLKKMGVS-EVEQCD------SGKEALRLVTEGLTQREEQGSVDKLPFDY 122 (206)
T ss_dssp TCEEEEECSCHH-----------HHHHHHHHHHHTTCS-EEEEES------SHHHHHHHHHHHHHHHHHHTCSSCCSCSE
T ss_pred CCEEEEEeCCHH-----------HHHHHHHHHHHcCCC-eeeeeC------CHHHHHHHHHhhcccccccccccCCCCCE
Confidence 456777766532 345566666666532 344332 23455555543 2577
Q ss_pred EEEcC-CCCCCCHHHHHHHH-------cCCCEEecCC-C-C---ccceeecCceEEEeCCCCHHHHHHHHHHHH
Q 002909 671 FVQPA-LYEAFGLTVIEAMN-------CGLPTFATNQ-G-G---PAEIIIDGVSGFHIDPNNGDESSNKIADFF 731 (867)
Q Consensus 671 fV~PS-~~EgfGltvlEAMa-------~GlPVIat~~-g-G---~~EiI~dg~~G~lv~p~d~e~lA~aI~~ll 731 (867)
+++=. ..+.-|+.+++.+. ..+|||.... . . ..+.+..|..+|+..|-+ ++.++|..++
T Consensus 123 illD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l 194 (206)
T 3mm4_A 123 IFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIE 194 (206)
T ss_dssp EEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC
T ss_pred EEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHH
Confidence 76633 23455777777664 4678887432 2 2 123445688999999988 8888887776
No 164
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=20.02 E-value=1.3e+02 Score=31.08 Aligned_cols=34 Identities=9% Similarity=0.225 Sum_probs=18.4
Q ss_pred cccCCceeeccCcCCCHHHHHHHHHHHHHHhccCCC
Q 002909 189 LNHRGEQLMINDTLDTVDKLQAALIAAEVSISDLPK 224 (867)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (867)
|+|+.-..+++++|.|.++++..+. .-.|..+|.
T Consensus 6 ~~~~~~~~~~~~~i~~~~~ie~~~~--~p~lg~iP~ 39 (271)
T 3bfv_A 6 HHHHHGSVIFDKRIKDEEDVEKELG--LPVLGSIQK 39 (271)
T ss_dssp ----------CCCCCSHHHHHHHHC--CCEEEEEEC
T ss_pred cccccccEEeeCcCCCHHHHHHHhC--CCeEEEecc
Confidence 4445557899999999998887653 456666665
No 165
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=20.01 E-value=5e+02 Score=27.10 Aligned_cols=119 Identities=8% Similarity=0.078 Sum_probs=69.7
Q ss_pred CCcEEEEEeccCCcCChHHHHHHHHHhHccCCCeEEEEEeCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCcEEEccccc
Q 002909 573 KKPIIFSMARLDTVKNITGLTEWYGKNKRLRNMVNLVVVAGFFDPSKSHDREEIAEIKKMHTLIEKYQLQGQFRWIAAQT 652 (867)
Q Consensus 573 ~k~iIl~vGRL~~~Kgid~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~~L~~~V~flG~~~ 652 (867)
...+++.-|..+..-+ ..+++.+-.+.. .++.+++++..... +++ .+.+.+.+..+++|. ..|..+.-..
T Consensus 26 ~g~l~iiGGgedk~~~-~~i~~~~v~lag-g~~~~I~~IptAs~-----~~~--~~~~~~~~~f~~lG~-~~v~~L~i~~ 95 (291)
T 3en0_A 26 QPAILIIGGAEDKVHG-REILQTFWSRSG-GNDAIIGIIPSASR-----EPL--LIGERYQTIFSDMGV-KELKVLDIRD 95 (291)
T ss_dssp SCCEEEECSSCCSSSC-CHHHHHHHHHTT-GGGCEEEEECTTCS-----SHH--HHHHHHHHHHHHHCC-SEEEECCCCS
T ss_pred CceEEEEECCCCccCh-HHHHHHHHHHcC-CCCCeEEEEeCCCC-----ChH--HHHHHHHHHHHHcCC-CeeEEEEecC
Confidence 3445555555553323 344444443332 23577888865432 332 456677788888886 3566664211
Q ss_pred -CCCChHHHHHHHHccCcEEEEcCC--------CCCCCH--HHHHHHHcC-CCEEecCCCCc
Q 002909 653 -DRYRNGELYRCIADTKGAFVQPAL--------YEAFGL--TVIEAMNCG-LPTFATNQGGP 702 (867)
Q Consensus 653 -d~v~~~el~~~la~~aDvfV~PS~--------~EgfGl--tvlEAMa~G-lPVIat~~gG~ 702 (867)
...+.+++.+.+.+ ||++.++-- +...|+ .+.|+...| +|++.+..|..
T Consensus 96 r~~a~~~~~~~~l~~-ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~ 156 (291)
T 3en0_A 96 RAQGDDSGYRLFVEQ-CTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAA 156 (291)
T ss_dssp GGGGGCHHHHHHHHH-CSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHH
T ss_pred ccccCCHHHHHHHhc-CCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHH
Confidence 01335677788887 888877621 233444 577888899 99998877653
No 166
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=20.01 E-value=1.3e+02 Score=28.65 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=25.0
Q ss_pred cceEEEEccCccCCcccccCCCCcccchhHhHHHHHHHHHHHHHHHHHCCCcee
Q 002909 280 MFNVVIFSPHGYFGQADVLGLPDTGGQVVYILDQVRALEEELLLRIKQQGLSVK 333 (867)
Q Consensus 280 ~~rI~ivs~hg~p~~~~vlG~pdtGG~~vyvld~araL~~eLa~~L~~~GheV~ 333 (867)
-||++|+ +|=|..=-|.-.++ .++..|+++||+|+
T Consensus 6 ~m~~Lil-----------LGCPE~Pvq~p~~l--------Yl~~~Lk~~G~~v~ 40 (157)
T 1kjn_A 6 TGKALMV-----------LGCPESPVQIPLAI--------YTSHKLKKKGFRVT 40 (157)
T ss_dssp CCEEEEE-----------CCCSCSTTHHHHHH--------HHHHHHHHTTCEEE
T ss_pred ceeeeEE-----------ecCCCCcchhhHHH--------HHHHHHHhcCCeeE
Confidence 3777777 34445555555555 77889999999998
Done!