Query 002911
Match_columns 867
No_of_seqs 292 out of 1327
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 13:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1058 Vesicle coat complex C 100.0 7E-222 2E-226 1839.0 70.1 847 1-858 4-854 (948)
2 COG5096 Vesicle coat complex, 100.0 1.2E-82 2.5E-87 741.5 33.3 672 15-858 16-700 (757)
3 PTZ00429 beta-adaptin; Provisi 100.0 4.6E-68 1E-72 632.5 49.3 441 15-481 30-487 (746)
4 PF01602 Adaptin_N: Adaptin N 100.0 6.8E-62 1.5E-66 571.6 39.5 445 18-478 5-463 (526)
5 KOG1060 Vesicle coat complex A 100.0 3.2E-60 7E-65 536.8 38.4 443 17-482 35-514 (968)
6 KOG1062 Vesicle coat complex A 100.0 8.4E-60 1.8E-64 537.1 38.5 431 17-465 32-498 (866)
7 PF07718 Coatamer_beta_C: Coat 100.0 1.9E-57 4E-62 429.3 14.5 140 669-810 1-140 (140)
8 KOG1059 Vesicle coat complex A 100.0 8.6E-53 1.9E-57 473.4 34.3 438 18-474 37-502 (877)
9 KOG1061 Vesicle coat complex A 100.0 2.4E-52 5.2E-57 478.6 30.4 444 16-479 12-470 (734)
10 KOG1077 Vesicle coat complex A 100.0 3.9E-48 8.4E-53 433.9 36.6 433 17-466 35-513 (938)
11 KOG1078 Vesicle coat complex C 100.0 2.6E-29 5.7E-34 287.3 46.1 442 18-477 23-474 (865)
12 COG5240 SEC21 Vesicle coat com 99.9 4.2E-25 9E-30 244.4 34.9 444 18-478 23-496 (898)
13 PF14806 Coatomer_b_Cpla: Coat 99.9 1.7E-23 3.7E-28 196.8 2.8 47 814-861 1-47 (129)
14 PF01602 Adaptin_N: Adaptin N 99.5 9.1E-12 2E-16 146.9 32.9 415 20-460 45-481 (526)
15 PRK09687 putative lyase; Provi 99.5 4.8E-12 1E-16 137.6 23.6 252 97-418 24-276 (280)
16 PTZ00429 beta-adaptin; Provisi 99.4 3.1E-09 6.7E-14 128.8 42.2 341 21-391 72-437 (746)
17 PRK13800 putative oxidoreducta 99.4 1.4E-10 3E-15 145.2 29.5 272 132-458 622-895 (897)
18 PRK13800 putative oxidoreducta 99.4 1.2E-10 2.7E-15 145.7 28.9 274 97-420 622-895 (897)
19 PRK09687 putative lyase; Provi 99.3 1.1E-09 2.4E-14 119.2 24.7 246 62-342 31-279 (280)
20 PLN03200 cellulose synthase-in 99.2 4.6E-07 1E-11 117.9 48.7 429 18-466 100-642 (2102)
21 PLN03200 cellulose synthase-in 98.9 2.6E-06 5.7E-11 111.1 36.0 383 28-429 415-865 (2102)
22 KOG0212 Uncharacterized conser 98.7 5.8E-06 1.3E-10 94.1 27.4 355 97-464 43-446 (675)
23 COG5096 Vesicle coat complex, 98.7 1E-06 2.2E-11 105.4 21.9 299 93-406 52-383 (757)
24 PF10508 Proteasom_PSMB: Prote 98.7 4.7E-05 1E-09 90.0 34.6 258 97-357 78-381 (503)
25 PF10508 Proteasom_PSMB: Prote 98.7 3.7E-05 7.9E-10 90.9 33.1 257 126-388 72-367 (503)
26 KOG1060 Vesicle coat complex A 98.5 0.0001 2.2E-09 86.9 30.2 326 106-443 45-440 (968)
27 COG1413 FOG: HEAT repeat [Ener 98.5 6E-05 1.3E-09 84.2 27.5 212 96-357 43-254 (335)
28 KOG1062 Vesicle coat complex A 98.5 0.00019 4.2E-09 85.0 31.5 276 21-308 74-414 (866)
29 PF12717 Cnd1: non-SMC mitotic 98.4 6.2E-06 1.3E-10 84.0 16.1 103 109-215 1-111 (178)
30 KOG1059 Vesicle coat complex A 98.4 0.00041 9E-09 81.3 32.1 309 99-424 147-490 (877)
31 KOG2171 Karyopherin (importin) 98.4 0.001 2.2E-08 82.1 35.3 126 330-462 326-461 (1075)
32 KOG1824 TATA-binding protein-i 98.4 0.00081 1.8E-08 80.9 32.7 314 17-345 734-1095(1233)
33 KOG0166 Karyopherin (importin) 98.3 0.00015 3.3E-09 83.7 26.1 344 94-461 83-485 (514)
34 KOG0212 Uncharacterized conser 98.3 0.0016 3.5E-08 74.8 33.2 374 45-429 72-485 (675)
35 PF13646 HEAT_2: HEAT repeats; 98.3 3.4E-06 7.4E-11 74.9 9.7 86 99-196 2-88 (88)
36 KOG1058 Vesicle coat complex C 98.3 0.00027 6E-09 83.0 27.0 365 69-466 40-429 (948)
37 COG5240 SEC21 Vesicle coat com 98.3 0.00059 1.3E-08 78.1 28.6 367 88-478 55-459 (898)
38 KOG2023 Nuclear transport rece 98.3 1.5E-05 3.2E-10 92.2 15.8 313 114-465 376-735 (885)
39 PF04826 Arm_2: Armadillo-like 98.3 4.8E-05 1E-09 81.7 18.6 174 134-308 15-205 (254)
40 KOG2171 Karyopherin (importin) 98.3 0.00064 1.4E-08 83.8 30.0 337 99-444 121-528 (1075)
41 PF12717 Cnd1: non-SMC mitotic 98.2 2E-05 4.4E-10 80.3 14.8 162 292-458 1-175 (178)
42 COG1413 FOG: HEAT repeat [Ener 98.2 0.0019 4.1E-08 72.1 31.4 256 53-351 43-310 (335)
43 KOG1077 Vesicle coat complex A 98.2 0.0027 5.9E-08 74.5 31.8 372 66-457 55-469 (938)
44 TIGR02270 conserved hypothetic 98.1 0.0006 1.3E-08 78.2 25.1 242 109-406 38-280 (410)
45 KOG2023 Nuclear transport rece 98.1 0.00048 1E-08 80.1 22.7 306 125-465 84-466 (885)
46 PF05804 KAP: Kinesin-associat 98.1 0.0019 4.1E-08 78.4 28.7 315 133-463 292-653 (708)
47 KOG1061 Vesicle coat complex A 98.0 0.0023 5E-08 76.2 27.5 401 37-462 64-493 (734)
48 TIGR02270 conserved hypothetic 98.0 0.0019 4.1E-08 74.2 25.2 239 98-386 56-295 (410)
49 KOG1241 Karyopherin (importin) 98.0 0.01 2.3E-07 70.5 30.7 380 27-465 227-671 (859)
50 KOG0213 Splicing factor 3b, su 97.9 0.0039 8.5E-08 73.4 26.8 373 97-478 477-969 (1172)
51 KOG2259 Uncharacterized conser 97.9 0.0043 9.3E-08 72.5 25.8 344 133-482 77-496 (823)
52 KOG0166 Karyopherin (importin) 97.9 0.0054 1.2E-07 71.2 26.6 292 19-351 68-399 (514)
53 KOG1824 TATA-binding protein-i 97.8 0.0065 1.4E-07 73.4 26.3 261 115-386 805-1094(1233)
54 KOG1242 Protein containing ada 97.8 0.0057 1.2E-07 71.5 25.2 372 44-459 125-520 (569)
55 KOG1241 Karyopherin (importin) 97.8 0.018 3.9E-07 68.5 28.7 395 58-466 60-534 (859)
56 PF05918 API5: Apoptosis inhib 97.7 0.01 2.2E-07 69.9 26.3 278 107-392 33-350 (556)
57 KOG1078 Vesicle coat complex C 97.7 0.048 1E-06 65.3 30.7 130 719-858 629-783 (865)
58 KOG4224 Armadillo repeat prote 97.7 0.0033 7.2E-08 68.9 19.1 373 65-462 58-493 (550)
59 PF13646 HEAT_2: HEAT repeats; 97.6 0.00042 9E-09 61.4 9.1 86 133-229 1-87 (88)
60 KOG2259 Uncharacterized conser 97.6 0.041 8.9E-07 64.7 27.0 96 96-196 158-259 (823)
61 PF14764 SPG48: AP-5 complex s 97.5 0.092 2E-06 60.5 28.2 57 560-626 385-445 (459)
62 PF12348 CLASP_N: CLASP N term 97.4 0.00082 1.8E-08 70.8 10.3 176 19-198 5-204 (228)
63 COG5215 KAP95 Karyopherin (imp 97.4 0.35 7.6E-06 56.3 31.2 378 28-465 232-671 (858)
64 KOG2025 Chromosome condensatio 97.4 0.54 1.2E-05 56.2 32.9 270 18-306 6-292 (892)
65 COG5215 KAP95 Karyopherin (imp 97.2 0.23 5.1E-06 57.7 27.6 342 92-467 55-442 (858)
66 KOG0213 Splicing factor 3b, su 97.2 0.34 7.4E-06 57.9 28.9 424 20-483 639-1114(1172)
67 COG5064 SRP1 Karyopherin (impo 97.0 0.25 5.4E-06 54.3 24.1 275 132-423 115-442 (526)
68 PF05804 KAP: Kinesin-associat 97.0 0.34 7.4E-06 59.3 27.9 206 53-271 290-520 (708)
69 COG5181 HSH155 U2 snRNP splice 97.0 0.13 2.8E-06 60.1 22.7 160 314-478 602-774 (975)
70 cd00020 ARM Armadillo/beta-cat 96.9 0.0039 8.4E-08 57.7 8.0 99 98-199 9-119 (120)
71 KOG1020 Sister chromatid cohes 96.8 0.69 1.5E-05 59.4 28.9 346 99-447 819-1279(1692)
72 KOG1240 Protein kinase contain 96.8 0.16 3.5E-06 63.5 22.9 272 133-425 424-726 (1431)
73 KOG0414 Chromosome condensatio 96.8 0.01 2.2E-07 73.6 12.6 90 106-198 933-1025(1251)
74 KOG0567 HEAT repeat-containing 96.7 0.12 2.7E-06 55.1 18.6 269 97-420 4-276 (289)
75 PF04826 Arm_2: Armadillo-like 96.7 0.043 9.4E-07 59.2 15.3 173 281-458 15-201 (254)
76 KOG1242 Protein containing ada 96.6 2.4 5.2E-05 50.2 32.2 317 95-424 95-444 (569)
77 KOG4224 Armadillo repeat prote 96.5 0.15 3.2E-06 56.4 18.1 319 59-388 90-447 (550)
78 KOG1525 Sister chromatid cohes 96.5 0.71 1.5E-05 59.7 26.6 373 65-443 18-472 (1266)
79 KOG1020 Sister chromatid cohes 96.4 1.8 4E-05 55.8 28.2 122 129-254 814-940 (1692)
80 PF13513 HEAT_EZ: HEAT-like re 96.3 0.011 2.3E-07 47.9 6.1 49 110-158 1-55 (55)
81 KOG0211 Protein phosphatase 2A 96.3 2.4 5.1E-05 52.5 28.5 349 30-392 289-671 (759)
82 PF05918 API5: Apoptosis inhib 96.3 0.33 7.1E-06 57.6 20.5 215 133-406 25-251 (556)
83 PF01347 Vitellogenin_N: Lipop 96.2 0.29 6.3E-06 59.5 20.7 200 95-303 398-617 (618)
84 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.014 3E-07 53.6 6.6 66 125-192 21-89 (97)
85 KOG0168 Putative ubiquitin fus 96.1 0.71 1.5E-05 56.2 22.0 100 99-201 170-285 (1051)
86 PF02985 HEAT: HEAT repeat; I 96.1 0.0071 1.5E-07 43.3 3.6 29 132-160 1-29 (31)
87 PF12348 CLASP_N: CLASP N term 96.0 0.14 3E-06 53.8 14.3 169 288-460 16-204 (228)
88 KOG1943 Beta-tubulin folding c 96.0 1.8 3.9E-05 54.1 24.9 331 125-461 335-746 (1133)
89 KOG1248 Uncharacterized conser 95.9 7.5 0.00016 49.4 30.2 221 217-443 628-880 (1176)
90 PF12460 MMS19_C: RNAPII trans 95.9 1.3 2.7E-05 51.4 22.7 229 69-324 163-410 (415)
91 KOG1992 Nuclear export recepto 95.8 4.6 9.9E-05 49.4 26.7 143 18-160 362-527 (960)
92 KOG1240 Protein kinase contain 95.8 0.41 8.9E-06 60.1 18.6 93 97-193 427-529 (1431)
93 smart00638 LPD_N Lipoprotein N 95.8 0.89 1.9E-05 54.9 21.9 258 32-303 288-573 (574)
94 COG5064 SRP1 Karyopherin (impo 95.7 0.84 1.8E-05 50.3 18.8 315 19-343 73-494 (526)
95 cd00020 ARM Armadillo/beta-cat 95.6 0.087 1.9E-06 48.6 9.7 67 132-201 8-79 (120)
96 smart00638 LPD_N Lipoprotein N 95.6 0.26 5.6E-06 59.5 16.1 183 14-203 354-548 (574)
97 KOG1943 Beta-tubulin folding c 95.6 9 0.00019 48.3 28.6 246 48-306 332-609 (1133)
98 PF12719 Cnd3: Nuclear condens 95.5 0.57 1.2E-05 51.8 17.5 101 95-197 26-140 (298)
99 PF12719 Cnd3: Nuclear condens 95.3 2.9 6.3E-05 46.1 22.2 62 135-199 31-92 (298)
100 KOG0567 HEAT repeat-containing 94.9 0.23 4.9E-06 53.1 11.0 91 97-198 188-278 (289)
101 COG5181 HSH155 U2 snRNP splice 94.8 2.5 5.5E-05 49.9 19.8 233 98-337 648-939 (975)
102 KOG1949 Uncharacterized conser 94.6 1.7 3.7E-05 52.0 18.1 129 66-198 100-247 (1005)
103 COG5098 Chromosome condensatio 94.6 2.9 6.2E-05 50.1 19.8 100 98-198 301-413 (1128)
104 KOG1248 Uncharacterized conser 94.6 3.3 7.1E-05 52.5 21.3 277 43-350 601-903 (1176)
105 KOG0414 Chromosome condensatio 94.4 0.67 1.5E-05 58.2 15.1 235 238-481 915-1179(1251)
106 PF13513 HEAT_EZ: HEAT-like re 94.1 0.07 1.5E-06 43.1 4.1 51 145-198 1-55 (55)
107 PF10363 DUF2435: Protein of u 94.1 0.17 3.6E-06 46.1 6.9 76 99-178 6-86 (92)
108 KOG0211 Protein phosphatase 2A 94.0 16 0.00036 45.3 25.8 354 97-458 238-660 (759)
109 KOG1991 Nuclear transport rece 93.9 23 0.00051 44.4 39.7 440 31-479 18-595 (1010)
110 KOG0946 ER-Golgi vesicle-tethe 93.9 21 0.00045 43.9 25.3 318 143-462 35-437 (970)
111 PF01347 Vitellogenin_N: Lipop 93.9 0.44 9.6E-06 57.9 12.4 182 15-203 393-592 (618)
112 KOG0915 Uncharacterized conser 93.9 21 0.00046 46.7 26.6 350 36-392 1016-1432(1702)
113 KOG0915 Uncharacterized conser 93.1 26 0.00057 45.9 25.6 297 124-462 1032-1347(1702)
114 KOG2274 Predicted importin 9 [ 92.9 31 0.00068 43.0 28.9 282 95-386 448-779 (1005)
115 COG5218 YCG1 Chromosome conden 92.9 25 0.00055 41.8 24.5 241 99-355 94-342 (885)
116 KOG2025 Chromosome condensatio 92.4 32 0.0007 41.9 27.6 142 33-189 61-211 (892)
117 KOG1222 Kinesin associated pro 92.4 16 0.00035 42.3 20.4 323 97-462 305-666 (791)
118 KOG2956 CLIP-associating prote 92.4 0.74 1.6E-05 52.8 10.1 140 19-160 288-477 (516)
119 COG5098 Chromosome condensatio 92.4 23 0.00051 42.8 22.2 118 229-346 286-416 (1128)
120 PF14500 MMS19_N: Dos2-interac 92.0 13 0.00029 40.4 19.0 136 293-428 96-241 (262)
121 KOG4653 Uncharacterized conser 92.0 6.4 0.00014 48.4 17.7 135 95-234 726-876 (982)
122 PF12830 Nipped-B_C: Sister ch 92.0 2.1 4.6E-05 44.0 12.3 64 276-343 6-72 (187)
123 KOG2213 Apoptosis inhibitor 5/ 92.0 26 0.00057 39.8 24.0 313 144-460 37-401 (460)
124 PF12830 Nipped-B_C: Sister ch 91.9 1.5 3.2E-05 45.1 11.1 68 99-168 11-80 (187)
125 cd00256 VATPase_H VATPase_H, r 91.9 13 0.00027 43.4 19.5 252 216-472 112-393 (429)
126 PF12460 MMS19_C: RNAPII trans 91.6 32 0.00069 39.9 32.1 192 263-464 172-396 (415)
127 PF14500 MMS19_N: Dos2-interac 91.5 14 0.0003 40.3 18.4 144 329-476 95-257 (262)
128 KOG0946 ER-Golgi vesicle-tethe 91.5 5.2 0.00011 48.7 16.0 179 243-443 23-219 (970)
129 PF08506 Cse1: Cse1; InterPro 91.4 0.42 9.1E-06 54.5 6.9 135 20-155 213-370 (370)
130 KOG1949 Uncharacterized conser 91.3 6.5 0.00014 47.3 16.3 140 91-232 167-329 (1005)
131 KOG0413 Uncharacterized conser 91.1 30 0.00064 43.4 21.7 234 132-386 473-720 (1529)
132 PF12755 Vac14_Fab1_bd: Vacuol 91.0 1.3 2.8E-05 40.7 8.5 66 274-341 23-92 (97)
133 KOG4413 26S proteasome regulat 91.0 30 0.00064 38.5 24.1 306 35-346 64-440 (524)
134 PF14631 FancD2: Fanconi anaem 90.7 76 0.0017 42.7 27.3 102 241-344 434-541 (1426)
135 KOG1243 Protein kinase [Genera 90.3 1.7 3.6E-05 52.3 10.6 109 275-387 327-437 (690)
136 KOG2062 26S proteasome regulat 89.9 3.9 8.5E-05 49.4 13.1 224 19-265 451-690 (929)
137 PF13001 Ecm29: Proteasome sta 89.5 53 0.0012 39.2 28.0 146 279-428 273-447 (501)
138 COG5218 YCG1 Chromosome conden 89.4 23 0.00051 42.1 18.4 71 126-198 86-159 (885)
139 PF03224 V-ATPase_H_N: V-ATPas 89.4 7.5 0.00016 43.2 14.6 142 319-465 108-272 (312)
140 KOG2160 Armadillo/beta-catenin 89.0 7.6 0.00016 43.5 13.9 105 245-349 127-244 (342)
141 PF12530 DUF3730: Protein of u 87.8 42 0.0009 35.8 18.8 51 374-424 100-151 (234)
142 KOG0413 Uncharacterized conser 87.6 9.5 0.00021 47.5 14.3 90 110-202 945-1037(1529)
143 PF01603 B56: Protein phosphat 87.5 63 0.0014 37.5 22.3 70 128-199 130-203 (409)
144 KOG2759 Vacuolar H+-ATPase V1 87.4 32 0.00069 39.5 17.5 44 430-473 364-407 (442)
145 PF08713 DNA_alkylation: DNA a 87.2 4.6 0.0001 41.8 10.6 133 62-209 59-196 (213)
146 KOG2160 Armadillo/beta-catenin 87.2 7.6 0.00017 43.5 12.5 101 137-240 130-246 (342)
147 KOG2062 26S proteasome regulat 86.8 27 0.00058 42.7 17.2 153 100-265 491-647 (929)
148 PF10363 DUF2435: Protein of u 86.7 2.7 5.8E-05 38.2 7.3 76 321-406 8-88 (92)
149 KOG2274 Predicted importin 9 [ 86.6 89 0.0019 39.3 21.7 230 246-479 453-718 (1005)
150 PF13251 DUF4042: Domain of un 86.3 26 0.00056 36.0 15.0 146 147-309 2-175 (182)
151 KOG2956 CLIP-associating prote 86.3 9.5 0.00021 44.1 12.8 135 130-269 328-475 (516)
152 PF03224 V-ATPase_H_N: V-ATPas 86.1 25 0.00054 39.1 16.2 116 186-308 55-179 (312)
153 PF12530 DUF3730: Protein of u 86.0 44 0.00094 35.6 17.3 46 300-345 105-151 (234)
154 KOG0168 Putative ubiquitin fus 85.9 12 0.00025 46.2 13.9 146 218-364 181-347 (1051)
155 KOG2137 Protein kinase [Signal 85.6 24 0.00052 43.0 16.3 133 211-343 279-416 (700)
156 KOG1293 Proteins containing ar 85.5 21 0.00046 43.0 15.5 144 63-212 386-547 (678)
157 KOG2032 Uncharacterized conser 85.5 83 0.0018 37.0 20.4 104 96-200 255-371 (533)
158 COG5116 RPN2 26S proteasome re 84.8 5.5 0.00012 46.8 10.1 180 18-213 482-669 (926)
159 PF11698 V-ATPase_H_C: V-ATPas 84.8 1.7 3.7E-05 41.4 5.2 65 279-343 44-113 (119)
160 KOG1820 Microtubule-associated 84.1 33 0.00072 43.1 17.1 190 125-319 247-455 (815)
161 PF06280 DUF1034: Fn3-like dom 84.0 4.4 9.6E-05 37.9 7.7 44 769-812 56-103 (112)
162 KOG2973 Uncharacterized conser 83.6 78 0.0017 35.2 19.7 126 99-236 6-142 (353)
163 PF14664 RICTOR_N: Rapamycin-i 82.8 90 0.002 35.8 19.0 166 155-349 7-180 (371)
164 KOG2137 Protein kinase [Signal 82.4 1E+02 0.0022 37.8 19.7 280 127-425 236-540 (700)
165 PF14664 RICTOR_N: Rapamycin-i 81.8 63 0.0014 37.0 17.3 43 303-345 221-269 (371)
166 KOG2933 Uncharacterized conser 80.9 2.8 6E-05 46.1 5.6 139 18-160 89-234 (334)
167 KOG1820 Microtubule-associated 80.8 45 0.00097 42.0 16.6 176 20-199 256-442 (815)
168 PF02985 HEAT: HEAT repeat; I 80.3 1.9 4.2E-05 30.6 2.9 27 98-124 2-28 (31)
169 cd03561 VHS VHS domain family; 79.7 17 0.00036 35.3 10.2 86 254-343 16-110 (133)
170 PF12231 Rif1_N: Rap1-interact 79.6 1.2E+02 0.0026 34.7 25.5 103 64-168 3-126 (372)
171 PF13001 Ecm29: Proteasome sta 79.5 1.1E+02 0.0024 36.5 19.0 164 181-345 247-443 (501)
172 KOG4653 Uncharacterized conser 79.4 1E+02 0.0022 38.6 18.3 177 135-348 731-921 (982)
173 KOG0891 DNA-dependent protein 79.2 42 0.0009 46.8 16.7 267 113-388 461-764 (2341)
174 KOG1293 Proteins containing ar 78.5 1.7E+02 0.0036 35.7 23.7 124 279-443 420-548 (678)
175 PLN03076 ARF guanine nucleotid 77.3 3E+02 0.0066 38.0 25.6 103 323-425 1354-1490(1780)
176 PF06030 DUF916: Bacterial pro 76.7 2.8 6.1E-05 40.1 3.7 39 770-808 80-119 (121)
177 cd00256 VATPase_H VATPase_H, r 76.6 1.6E+02 0.0035 34.5 25.8 186 110-308 52-258 (429)
178 cd03569 VHS_Hrs_Vps27p VHS dom 76.5 67 0.0014 31.6 13.4 86 254-343 20-112 (142)
179 PF00514 Arm: Armadillo/beta-c 76.4 4.2 9.1E-05 30.7 3.9 28 132-159 13-40 (41)
180 PF06685 DUF1186: Protein of u 76.2 61 0.0013 35.1 14.0 99 165-270 30-141 (249)
181 KOG1517 Guanine nucleotide bin 75.6 21 0.00045 45.2 11.3 133 53-198 512-669 (1387)
182 KOG2005 26S proteasome regulat 75.4 35 0.00076 41.3 12.7 119 109-235 621-744 (878)
183 PF05004 IFRD: Interferon-rela 75.0 1.4E+02 0.0031 33.2 18.0 60 99-158 89-158 (309)
184 PF08713 DNA_alkylation: DNA a 74.9 4.2 9E-05 42.2 4.8 67 100-168 124-190 (213)
185 KOG2933 Uncharacterized conser 74.9 17 0.00037 40.2 9.4 84 70-160 69-158 (334)
186 PF08569 Mo25: Mo25-like; Int 74.7 1.6E+02 0.0034 33.4 23.2 115 289-439 174-297 (335)
187 KOG1525 Sister chromatid cohes 74.5 3E+02 0.0065 36.6 24.7 88 301-395 244-337 (1266)
188 PF01603 B56: Protein phosphat 74.2 1.3E+02 0.0028 35.0 17.2 64 392-455 333-401 (409)
189 COG5116 RPN2 26S proteasome re 73.5 31 0.00066 41.0 11.4 173 20-211 449-630 (926)
190 cd03568 VHS_STAM VHS domain fa 73.2 30 0.00065 34.1 10.1 86 254-343 16-108 (144)
191 PF08167 RIX1: rRNA processing 73.0 38 0.00082 34.1 11.0 116 274-429 21-148 (165)
192 PF11935 DUF3453: Domain of un 72.8 14 0.00031 39.5 8.3 119 139-269 1-143 (239)
193 KOG1967 DNA repair/transcripti 72.8 26 0.00056 43.8 11.1 204 100-339 800-1018(1030)
194 cd03567 VHS_GGA VHS domain fam 72.7 53 0.0012 32.2 11.6 89 251-343 14-114 (139)
195 cd03565 VHS_Tom1 VHS domain fa 72.5 67 0.0015 31.5 12.3 90 251-343 14-113 (141)
196 cd06561 AlkD_like A new struct 72.3 38 0.00083 34.4 11.2 73 134-210 108-183 (197)
197 PF12074 DUF3554: Domain of un 71.4 1.8E+02 0.0039 32.6 21.5 86 112-200 3-90 (339)
198 PF12074 DUF3554: Domain of un 70.4 1.5E+02 0.0033 33.2 16.3 53 108-160 35-90 (339)
199 KOG4535 HEAT and armadillo rep 70.3 12 0.00026 43.4 7.2 50 67-124 25-75 (728)
200 PF11701 UNC45-central: Myosin 69.6 11 0.00024 37.6 6.2 124 142-268 16-156 (157)
201 KOG4199 Uncharacterized conser 69.3 2E+02 0.0044 32.5 27.6 305 97-433 78-412 (461)
202 KOG2081 Nuclear transport regu 69.1 2.6E+02 0.0056 33.6 26.6 101 372-474 366-469 (559)
203 smart00809 Alpha_adaptinC2 Ada 69.0 57 0.0012 29.6 10.4 71 737-809 16-89 (104)
204 PF02883 Alpha_adaptinC2: Adap 68.1 70 0.0015 29.7 11.1 75 735-810 20-101 (115)
205 KOG4535 HEAT and armadillo rep 68.0 40 0.00087 39.3 10.7 154 141-309 6-180 (728)
206 KOG1991 Nuclear transport rece 67.2 3.6E+02 0.0078 34.5 29.9 94 84-179 449-553 (1010)
207 KOG1993 Nuclear transport rece 66.7 3.4E+02 0.0074 34.1 24.1 324 126-476 521-879 (978)
208 PF12765 Cohesin_HEAT: HEAT re 65.2 5.2 0.00011 30.8 2.2 38 303-340 3-42 (42)
209 PF10633 NPCBM_assoc: NPCBM-as 64.2 16 0.00036 31.6 5.5 60 740-799 6-67 (78)
210 PF08167 RIX1: rRNA processing 64.1 38 0.00083 34.0 8.9 72 125-198 19-95 (165)
211 cd06561 AlkD_like A new struct 63.7 8.2 0.00018 39.4 4.1 66 100-167 109-175 (197)
212 KOG2038 CAATT-binding transcri 63.1 3.9E+02 0.0084 33.4 21.6 125 64-198 280-407 (988)
213 PF05327 RRN3: RNA polymerase 62.6 2.8E+02 0.006 33.7 17.4 117 340-464 63-198 (563)
214 PF11864 DUF3384: Domain of un 61.9 3.3E+02 0.0071 32.2 32.1 92 331-423 230-329 (464)
215 PF12765 Cohesin_HEAT: HEAT re 61.8 9.1 0.0002 29.5 3.0 24 131-154 18-41 (42)
216 PF00927 Transglut_C: Transglu 61.6 18 0.0004 33.3 5.7 55 737-791 13-74 (107)
217 PF11698 V-ATPase_H_C: V-ATPas 60.4 16 0.00035 34.9 5.0 28 133-160 88-115 (119)
218 KOG4413 26S proteasome regulat 60.3 2.9E+02 0.0063 31.1 20.5 226 125-353 76-341 (524)
219 PF03130 HEAT_PBS: PBS lyase H 58.8 16 0.00034 25.2 3.5 25 112-136 1-25 (27)
220 PF14225 MOR2-PAG1_C: Cell mor 57.8 2.8E+02 0.0062 30.2 21.6 107 330-443 130-239 (262)
221 PF11865 DUF3385: Domain of un 57.7 65 0.0014 32.3 9.2 22 143-166 23-44 (160)
222 PF07705 CARDB: CARDB; InterP 57.1 49 0.0011 29.3 7.6 71 737-811 17-87 (101)
223 PF11838 ERAP1_C: ERAP1-like C 57.0 2.9E+02 0.0064 30.1 19.2 101 328-444 167-267 (324)
224 KOG1243 Protein kinase [Genera 57.0 28 0.0006 42.3 7.3 99 101-201 335-438 (690)
225 cd08050 TAF6 TATA Binding Prot 56.7 1.5E+02 0.0032 33.7 12.8 144 316-462 178-340 (343)
226 KOG4500 Rho/Rac GTPase guanine 56.5 3.9E+02 0.0084 31.3 23.6 195 218-428 328-568 (604)
227 PF08389 Xpo1: Exportin 1-like 56.1 1.3E+02 0.0029 28.5 11.0 54 145-201 2-55 (148)
228 PF14807 AP4E_app_platf: Adapt 55.4 8 0.00017 36.0 2.0 27 832-858 1-27 (104)
229 PF10274 ParcG: Parkin co-regu 54.7 32 0.00069 35.4 6.4 35 126-160 75-109 (183)
230 KOG2021 Nuclear mRNA export fa 54.0 3.6E+02 0.0079 33.6 15.6 106 254-362 17-139 (980)
231 KOG1822 Uncharacterized conser 53.8 7.9E+02 0.017 34.1 23.6 107 89-198 867-986 (2067)
232 KOG1967 DNA repair/transcripti 53.8 1.2E+02 0.0027 38.2 12.0 133 279-417 868-1017(1030)
233 KOG1993 Nuclear transport rece 53.7 5.5E+02 0.012 32.3 18.1 84 239-322 523-615 (978)
234 PF11614 FixG_C: IG-like fold 52.6 41 0.00088 31.6 6.5 54 743-797 35-88 (118)
235 smart00185 ARM Armadillo/beta- 52.5 20 0.00044 26.2 3.6 28 132-159 13-40 (41)
236 cd08050 TAF6 TATA Binding Prot 52.5 1.4E+02 0.003 33.9 11.7 71 129-201 256-341 (343)
237 PF08569 Mo25: Mo25-like; Int 52.5 3.9E+02 0.0085 30.2 18.5 136 131-269 76-236 (335)
238 COG5231 VMA13 Vacuolar H+-ATPa 51.1 2.9E+02 0.0063 31.1 13.1 215 243-470 150-394 (432)
239 cd03569 VHS_Hrs_Vps27p VHS dom 50.2 38 0.00082 33.3 6.0 62 95-160 40-114 (142)
240 PF08767 CRM1_C: CRM1 C termin 50.1 4.1E+02 0.0089 29.7 20.4 37 309-345 158-194 (319)
241 PF10274 ParcG: Parkin co-regu 49.7 52 0.0011 33.9 7.0 89 52-141 37-127 (183)
242 PF00790 VHS: VHS domain; Int 49.5 1.1E+02 0.0024 29.8 9.1 65 277-342 41-115 (140)
243 PF08506 Cse1: Cse1; InterPro 49.2 1.2E+02 0.0026 34.8 10.7 50 216-265 319-369 (370)
244 PF08752 COP-gamma_platf: Coat 48.8 1E+02 0.0022 30.8 8.6 64 730-793 39-104 (151)
245 PF09090 MIF4G_like_2: MIF4G l 48.6 1.2E+02 0.0025 32.8 10.0 105 372-480 50-158 (253)
246 cd03572 ENTH_epsin_related ENT 48.3 31 0.00068 33.1 4.9 46 303-348 25-70 (122)
247 cd03561 VHS VHS domain family; 47.5 72 0.0016 30.8 7.4 67 94-160 35-112 (133)
248 COG5656 SXM1 Importin, protein 46.5 6.9E+02 0.015 31.3 21.3 275 141-423 367-710 (970)
249 PF12612 TFCD_C: Tubulin foldi 46.4 2.1E+02 0.0044 29.5 11.1 36 125-160 1-36 (193)
250 KOG2153 Protein involved in th 45.7 6.6E+02 0.014 30.9 26.2 179 116-305 195-389 (704)
251 KOG2005 26S proteasome regulat 45.7 6.8E+02 0.015 31.0 21.5 276 99-386 418-742 (878)
252 KOG1048 Neural adherens juncti 45.3 7.1E+02 0.015 31.1 20.2 66 395-460 566-639 (717)
253 PF14225 MOR2-PAG1_C: Cell mor 44.3 4.6E+02 0.0099 28.6 16.6 84 74-161 6-92 (262)
254 PF13251 DUF4042: Domain of un 42.6 3.8E+02 0.0082 27.6 12.0 23 324-346 48-70 (182)
255 PF04388 Hamartin: Hamartin pr 42.0 7.8E+02 0.017 30.6 17.9 136 16-168 3-146 (668)
256 cd07064 AlkD_like_1 A new stru 42.0 3.2E+02 0.007 28.5 11.8 25 134-158 118-142 (208)
257 PF14631 FancD2: Fanconi anaem 41.6 1.1E+03 0.024 32.2 22.2 58 394-451 472-532 (1426)
258 PF00790 VHS: VHS domain; Int 40.3 50 0.0011 32.2 5.1 67 94-160 40-118 (140)
259 PF06685 DUF1186: Protein of u 40.1 97 0.0021 33.5 7.6 76 135-213 115-196 (249)
260 KOG2011 Sister chromatid cohes 40.0 2.3E+02 0.0049 36.7 11.7 131 289-423 297-434 (1048)
261 smart00288 VHS Domain present 39.9 2.1E+02 0.0045 27.6 9.3 65 277-342 36-108 (133)
262 COG5231 VMA13 Vacuolar H+-ATPa 39.7 6E+02 0.013 28.7 13.9 66 279-345 357-428 (432)
263 PF05004 IFRD: Interferon-rela 39.5 5.8E+02 0.013 28.4 22.1 53 293-345 200-260 (309)
264 KOG1992 Nuclear export recepto 39.4 9.1E+02 0.02 30.7 20.9 59 131-197 6-65 (960)
265 PF00514 Arm: Armadillo/beta-c 39.2 37 0.00081 25.4 3.2 28 243-270 13-40 (41)
266 COG5110 RPN1 26S proteasome re 38.7 3.3E+02 0.0072 32.7 11.8 134 114-255 627-779 (881)
267 PF14796 AP3B1_C: Clathrin-ada 38.6 69 0.0015 31.8 5.7 53 741-793 87-140 (145)
268 PRK14341 lipoate-protein ligas 38.4 17 0.00036 38.4 1.5 62 768-832 38-103 (213)
269 KOG1932 TATA binding protein a 38.2 1E+03 0.022 31.3 16.6 70 84-160 628-705 (1180)
270 PRK14344 lipoate-protein ligas 37.6 22 0.00047 37.8 2.2 64 767-833 52-122 (223)
271 cd00197 VHS_ENTH_ANTH VHS, ENT 37.3 1.2E+02 0.0026 28.2 7.0 17 327-343 97-113 (115)
272 PRK14349 lipoate-protein ligas 37.3 19 0.00042 38.0 1.7 64 767-833 32-99 (220)
273 PRK14345 lipoate-protein ligas 36.8 22 0.00049 37.9 2.2 63 767-833 44-109 (234)
274 cd05135 RasGAP_RASAL Ras GTPas 36.6 6.7E+02 0.015 28.3 14.4 45 100-144 9-53 (333)
275 KOG2038 CAATT-binding transcri 36.4 9.8E+02 0.021 30.2 21.4 98 171-269 305-407 (988)
276 smart00567 EZ_HEAT E-Z type HE 36.3 44 0.00095 23.2 3.0 24 111-134 2-25 (30)
277 KOG0392 SNF2 family DNA-depend 36.3 3.9E+02 0.0084 35.3 12.7 122 297-439 127-252 (1549)
278 PF14676 FANCI_S2: FANCI solen 36.2 3.6E+02 0.0077 27.1 10.5 60 207-266 97-156 (158)
279 PF09759 Atx10homo_assoc: Spin 35.0 87 0.0019 29.2 5.4 57 374-430 2-65 (102)
280 PF08568 Kinetochor_Ybp2: Unch 35.0 2.7E+02 0.0058 34.3 11.4 49 376-424 145-195 (633)
281 KOG2140 Uncharacterized conser 34.5 3E+02 0.0065 32.9 10.6 145 329-480 160-327 (739)
282 PF04388 Hamartin: Hamartin pr 34.3 3.5E+02 0.0075 33.7 12.1 110 334-460 54-168 (668)
283 smart00288 VHS Domain present 33.9 1.7E+02 0.0037 28.3 7.6 66 95-160 36-111 (133)
284 KOG2759 Vacuolar H+-ATPase V1 33.8 8.3E+02 0.018 28.5 21.7 153 108-274 62-232 (442)
285 KOG2549 Transcription initiati 33.7 4E+02 0.0088 32.0 11.7 59 141-201 308-371 (576)
286 cd03567 VHS_GGA VHS domain fam 33.0 2.3E+02 0.0049 27.9 8.3 66 95-160 37-116 (139)
287 PRK14346 lipoate-protein ligas 32.4 25 0.00054 37.4 1.6 63 767-832 34-100 (230)
288 PF03130 HEAT_PBS: PBS lyase H 32.3 71 0.0015 21.9 3.4 12 147-158 1-12 (27)
289 PRK14347 lipoate-protein ligas 31.9 27 0.00059 36.7 1.8 64 767-833 35-104 (209)
290 PRK14342 lipoate-protein ligas 31.8 26 0.00056 37.0 1.6 63 768-833 38-104 (213)
291 KOG1517 Guanine nucleotide bin 31.6 5.2E+02 0.011 33.6 12.6 91 372-463 571-672 (1387)
292 PRK14348 lipoate-protein ligas 31.4 31 0.00067 36.6 2.2 64 767-833 40-113 (221)
293 KOG0891 DNA-dependent protein 31.4 9E+02 0.02 34.6 16.0 115 246-363 485-611 (2341)
294 KOG2149 Uncharacterized conser 30.3 3.9E+02 0.0085 30.8 10.6 61 369-429 110-175 (393)
295 PF14676 FANCI_S2: FANCI solen 30.0 1.9E+02 0.0042 29.0 7.4 99 348-454 52-153 (158)
296 PRK14015 pepN aminopeptidase N 29.9 1.2E+03 0.026 30.0 16.1 235 17-254 551-859 (875)
297 PF12744 ATG19_autophagy: Auto 29.5 69 0.0015 34.2 4.3 88 733-821 85-179 (236)
298 PF08623 TIP120: TATA-binding 28.8 69 0.0015 32.6 4.0 21 370-390 130-150 (169)
299 PF14228 MOR2-PAG1_mid: Cell m 28.6 1E+03 0.022 31.5 15.2 122 35-167 491-616 (1120)
300 PRK14343 lipoate-protein ligas 27.5 33 0.00072 36.6 1.6 63 767-832 46-113 (235)
301 COG5101 CRM1 Importin beta-rel 27.2 1.3E+03 0.027 28.6 18.9 99 254-357 26-142 (1053)
302 PF10165 Ric8: Guanine nucleot 27.1 1.1E+03 0.023 27.8 18.3 96 329-426 152-281 (446)
303 COG5095 TAF6 Transcription ini 27.0 1.9E+02 0.0042 32.0 7.1 71 128-200 274-359 (450)
304 PHA03159 hypothetical protein; 26.7 55 0.0012 31.4 2.7 48 120-171 1-48 (160)
305 cd07064 AlkD_like_1 A new stru 26.6 1.3E+02 0.0029 31.4 5.9 65 101-167 120-184 (208)
306 KOG2374 Uncharacterized conser 26.6 1.7E+02 0.0036 34.5 6.9 71 372-442 21-91 (661)
307 KOG1848 Uncharacterized conser 26.5 1.7E+03 0.038 30.0 16.5 36 140-176 851-886 (1610)
308 PF10521 DUF2454: Protein of u 26.2 5.8E+02 0.013 27.9 11.1 34 127-160 115-148 (282)
309 PF12231 Rif1_N: Rap1-interact 26.0 1E+03 0.022 27.1 22.8 53 291-343 146-202 (372)
310 cd03572 ENTH_epsin_related ENT 25.9 1E+02 0.0022 29.6 4.4 39 125-165 32-70 (122)
311 KOG2149 Uncharacterized conser 25.8 4.9E+02 0.011 30.1 10.4 101 289-393 68-176 (393)
312 smart00185 ARM Armadillo/beta- 25.7 98 0.0021 22.4 3.5 28 243-270 13-40 (41)
313 PF02854 MIF4G: MIF4G domain; 25.2 6.8E+02 0.015 24.8 12.5 119 335-479 2-133 (209)
314 PF11865 DUF3385: Domain of un 25.1 5E+02 0.011 26.0 9.4 31 241-271 9-40 (160)
315 TIGR00214 lipB lipoate-protein 25.0 40 0.00086 34.8 1.6 63 767-832 14-83 (184)
316 KOG4712 Uncharacterized conser 24.7 1.6E+03 0.035 29.0 17.8 37 220-257 72-108 (1335)
317 cd03568 VHS_STAM VHS domain fa 24.5 6.2E+02 0.013 24.9 9.8 72 237-308 32-110 (144)
318 PF12397 U3snoRNP10: U3 small 24.0 6E+02 0.013 23.7 9.7 62 97-160 7-74 (121)
319 KOG3723 PH domain protein Melt 22.9 3.7E+02 0.0079 32.4 8.8 107 377-485 181-287 (851)
320 PF09324 DUF1981: Domain of un 22.4 2.5E+02 0.0054 25.1 6.0 63 278-340 17-83 (86)
321 COG1470 Predicted membrane pro 21.9 1.8E+02 0.0039 34.2 6.0 61 738-799 396-459 (513)
322 PF14668 RICTOR_V: Rapamycin-i 21.7 1.3E+02 0.0029 26.2 4.0 54 148-201 4-59 (73)
323 KOG0368 Acetyl-CoA carboxylase 21.7 2.2E+03 0.048 29.5 18.9 113 225-342 965-1080(2196)
324 COG3761 NADH:ubiquinone oxidor 21.2 60 0.0013 29.9 1.7 22 802-823 21-46 (118)
325 smart00543 MIF4G Middle domain 21.1 8.2E+02 0.018 24.3 10.7 114 340-480 7-127 (200)
326 PF06371 Drf_GBD: Diaphanous G 21.0 1.3E+02 0.0027 30.3 4.3 24 321-344 163-186 (187)
327 PF12031 DUF3518: Domain of un 20.9 1.6E+02 0.0035 31.7 5.1 25 328-352 136-161 (257)
328 COG4912 Predicted DNA alkylati 20.7 1.4E+02 0.0031 31.5 4.6 30 170-200 154-183 (222)
329 KOG1932 TATA binding protein a 20.6 1.7E+03 0.036 29.4 14.3 51 216-272 654-706 (1180)
330 PF12397 U3snoRNP10: U3 small 20.6 5E+02 0.011 24.3 8.1 71 127-201 2-75 (121)
No 1
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-222 Score=1839.00 Aligned_cols=847 Identities=57% Similarity=0.920 Sum_probs=804.4
Q ss_pred CCCceEEEEecCCCCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHH
Q 002911 1 MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEI 80 (867)
Q Consensus 1 ~~~~~t~~~~~~~~~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~ 80 (867)
|+..|++|++.+..++++..+|++.|++++++.|+++||++|++|++|+++|.++|+||||+||++||++|||+|+|||+
T Consensus 4 ~~~~~~~~~~~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~ 83 (948)
T KOG1058|consen 4 MEMVCYTLLNSPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWEL 83 (948)
T ss_pred cccceeeeecCCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHH
Confidence 35678888888777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 81 IDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 81 ~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
+||.++||+++|||||+||++|||||||||||||.+|||||++++||+++|++|.|+.||+|||+||||+|++|++.||+
T Consensus 84 vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk 163 (948)
T KOG1058|consen 84 VPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYK 163 (948)
T ss_pred ccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH
Q 002911 161 LPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK 240 (867)
Q Consensus 161 l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~ 240 (867)
.+.+++||+|++++.||..|+||+|+||||.+|.+++|++|++||..+++++++|++.+|++|+++|++.|..+|+++
T Consensus 164 --~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 164 --NFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred --hhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002911 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (867)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~ 320 (867)
.++++++.++|++++++|+||||.+|+.++++|+++++++.++++++.+++|||+|+|+|++|..+...|.+++++++|+
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mD 321 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMD 321 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHH
Q 002911 321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL 400 (867)
Q Consensus 321 il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~L 400 (867)
++++|+.+|.+||+|+|++.++|++++|+++|++.|+||+.++.+.+.|++.+||++++++||.||.+||+++..+|+.|
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~l 401 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLL 401 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877788999999999999999999999999999999
Q ss_pred HHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHHHHHhhCC
Q 002911 401 MDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGE 480 (867)
Q Consensus 401 l~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i~~~l~~ 480 (867)
++++++.++..+.+++.|++++++++|++|..|+++|++.|+.|++++++++++||+||||....+++.+|+.+++++|+
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGE 481 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGE 481 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCccCCCCcchhhhhhccccccccCCCCeecCCCCeeccccccccCCCCCccccCccCC-hhhHHhhhcCChhhH
Q 002911 481 LPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTS-GNLRSLLLTGDFFLG 559 (867)
Q Consensus 481 ~p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Dgtyat~~~~~~~~~~~~~~~~~~~~~-~~lr~~~~~gd~~l~ 559 (867)
+|++.+|.+...++..++.+.. .......++|+|++|||||||||+++++++ ++.+. |+||+++++||||+|
T Consensus 482 vp~~~sei~~~~~~~~~e~~~~-~~s~~~~~~~~v~~dGTYAteSA~s~~~~~------~~~~~rp~lrr~ll~Gdfflg 554 (948)
T KOG1058|consen 482 VPIVCSEIERLHGEQTKEIELT-SSSAPSSTKPKVLADGTYATESAFSSSSPT------VKEADRPSLRRFLLTGDFFLG 554 (948)
T ss_pred cceehHHHhhhhcccccccccc-cccccccCCCeeecCccchhhhhhcccccc------hhhccchHHHHHhhcchHHHH
Confidence 9999998666655433332211 111234689999999999999999874432 34445 999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcchHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhhcCChhHHHHHHHH
Q 002911 560 AVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQS 639 (867)
Q Consensus 560 ~~la~~l~kl~~r~~~~~~~~~~~n~~~a~~~~i~~~~l~~~~~~~~~~~id~d~~~ri~~~~~~l~~~~~~~~~~~~~~ 639 (867)
|++|+||||||+||..+..+..+.|+++||||+||+||||+|||++++++||+||.+||+.|||+|.+..|++..+|+++
T Consensus 555 A~la~tLtKl~lr~~~l~~~k~~~N~~~aea~lIM~sii~lGkS~~~~~~Id~Ds~erI~~cIr~L~~~~p~~~~~f~~~ 634 (948)
T KOG1058|consen 555 AVLAITLTKLVLRFEELEGPKTRQNALKAEALLIMVSIIHLGKSSFVSKTIDNDSLERIMLCIRILVSRNPEMNSQFLDD 634 (948)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHhccccCCCCCcCcchHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccccccCCCcccchhhhhHHHHHHhcCCccCCc--chhhhhh
Q 002911 640 CRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGD--DANKLNR 717 (867)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~f~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~--~~~~l~~ 717 (867)
||++|+.|+.++.+++.++..++.++..+||||||+|+||++... ...++|.|++||.+|+|.....++ ..|||+|
T Consensus 635 cr~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ddpI~f~q~~~~~s--~~~~en~fe~~L~~A~g~~~~~~~~s~~sKL~k 712 (948)
T KOG1058|consen 635 CRQSFEKMIDAKKKRRKEELLKKSQKTTAQPDDPINFRQLRSGRS--DERGENQFEEDLVQATGDAQKAEDGSPASKLNK 712 (948)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccccCCCCCccchHhhcccch--hhhhhhHHHHHHHHHhccccccccCCcHHHhhc
Confidence 999999999999888888777788888999999999999986432 223678899999999997655444 4599999
Q ss_pred hhcccCCCCcceEEEEeeeecceeEEEEEEeecCcccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecc
Q 002911 718 ILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTE 797 (867)
Q Consensus 718 v~qltg~sDpvY~Ea~v~v~~~di~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste 797 (867)
|+|||||||||||||||+|||||||||||+||||++||||+++||||+||||+||||+|++|+||+|+++||||||+|||
T Consensus 713 V~QLtGfSDPVYaEAyv~vnqyDIVLDvL~VNqT~~tLQNl~lelATlgdLKlve~p~p~~Laph~f~~ikatvKVsSte 792 (948)
T KOG1058|consen 713 VTQLTGFSDPVYAEAYVTVNQYDIVLDVLLVNQTKETLQNLSLELATLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTE 792 (948)
T ss_pred eeeccCCCCCeeeEEEeeeeeeeEEEEEEEecCChHHHhhheeeeeeccCceeeecCCCcccCcccceeEEEEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEecC-CccccceEEccccccccccccccCCCCcHHHHhhccccccceeEEeec
Q 002911 798 TGVIFGNIVYETS-NVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLAL 858 (867)
Q Consensus 798 ~g~ifg~i~y~~~-~~~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~feWENki~v~t 858 (867)
||||||||+||++ ++.+++|||||||||||||||+||+|++++||+||+||||||||+|||
T Consensus 793 nGvIfGnIvY~~~~~a~~~~~VvLndIhidImDYI~Pa~~~d~~FRtmW~efEWENKvtv~t 854 (948)
T KOG1058|consen 793 NGVIFGNIVYDTSEAANDRNVVVLNDIHIDIMDYIKPAKCDDDEFRTMWAEFEWENKVTVNT 854 (948)
T ss_pred CcEEEEEEEecCccccccceEEEeccccccHHHhcCCCcCChHHHHHHHHHhhhcceeeecc
Confidence 9999999999996 588999999999999999999999999999999999999999999999
No 2
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-82 Score=741.50 Aligned_cols=672 Identities=23% Similarity=0.318 Sum_probs=568.7
Q ss_pred CcccHHHHHHH-hcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch
Q 002911 15 TPAIANEIKEA-LEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (867)
Q Consensus 15 ~~~~~~eIr~~-L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E 93 (867)
..++.+..+.. |+|+++++|++|||++|..|+.|+|++.+||+|||+++ +.|.++|||+|+||++|++.+| +|
T Consensus 16 ~~~~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P-----~~ 89 (757)
T COG5096 16 NADSVAALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP-----EL 89 (757)
T ss_pred cchHHhhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH-----HH
Confidence 34577888888 99999999999999999999999999999999999986 9999999999999999999987 57
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch-H
Q 002911 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-P 172 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~-~ 172 (867)
|+|+||+++|||+||||++||+|||+||.++.++++++++++|++|++|+||||||+|++|+.++|+ .++++.++. .
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~ 167 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGL 167 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 799999998 7
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcC-----ccc---hHHHHHHHHHHHHhhhcCchhHHHHH
Q 002911 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVS-----EWG---ELLQMVVLELIRKVCRTNKGEKGKYI 244 (867)
Q Consensus 173 ~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~-----~~~---p~lQ~~iL~ll~~~~~~~p~~~~~li 244 (867)
..+.++|..|+||.|++||+.+|.+|+++.+..|.......++ .+. +|.+..+++.+..+.+..|.....+.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~ 247 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFE 247 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHH
Confidence 7777778899999999999999999999988888766554443 344 89999999999999998899999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhh
Q 002911 245 KIIISLLNAPSTAVIYECAGTLVSLSSA---PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDV 321 (867)
Q Consensus 245 ~~L~~lL~s~s~aV~~eaa~tL~~Ls~~---p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~i 321 (867)
+.+...+++.++.|..-++..+..+..- .........+++.++.+ +..-+.++.......+....|..+ ++.+.+
T Consensus 248 ~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~-~~~~~~~vl~~~~~~~l~~~~k~~-~~~~~~ 325 (757)
T COG5096 248 ERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAK-PESLIQYVLRRNIQIDLEVCSKLL-DKVKKL 325 (757)
T ss_pred HhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcC-CHHHHHHHHHHhhHHHHHhhHHHH-HHHhhh
Confidence 9999999999999999999998877431 12333344555555532 223455555555555555566655 567777
Q ss_pred eecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHH
Q 002911 322 LRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLM 401 (867)
Q Consensus 322 l~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll 401 (867)
+.+-.++|.+++.++++++..+++.+|...++.++..+.... ..+.++.++++++||..+.+.+.....|++.++
T Consensus 326 f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~-----~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~l 400 (757)
T COG5096 326 FLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAEN-----HIDAEMVSEAIKALGDLASKAESSVNDCISELL 400 (757)
T ss_pred hhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhc-----cccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 778899999999999999999999999999888877554431 257899999999999999877655555555555
Q ss_pred HHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHHHHHhhCCC
Q 002911 402 DFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGEL 481 (867)
Q Consensus 402 ~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i~~~l~~~ 481 (867)
+++. + +|+-|+|.....++..+|+++|..++.+
T Consensus 401 el~~----------------------------------------------g-~~~~~~Yi~~e~~~~~~i~v~r~~~~~l 433 (757)
T COG5096 401 ELLE----------------------------------------------G-VWIRGSYIVQEVRIVDCISVIRISVLVL 433 (757)
T ss_pred Hhcc----------------------------------------------c-hhhccchhhhhhcccceeeeeehhcchh
Confidence 5443 6 9999999999998888999999999999
Q ss_pred CccCCCccCCCCcchhhhhhccccccccCCCCeecCCCCeeccccccccCCCCCccccCccCChhhHHhhhcCChhhHHH
Q 002911 482 PFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAV 561 (867)
Q Consensus 482 p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Dgtyat~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~gd~~l~~~ 561 (867)
|++..+ .+.++.+|+|+|+++++-+. .+|.++... |+|+|+.
T Consensus 434 r~l~~~------------------------~~~~~~~~l~~~~e~l~~~~------------~~P~~k~~~--~~~~~~w 475 (757)
T COG5096 434 RILPNE------------------------YPKILLRGLYALEETLELQS------------REPRAKSVT--DKYLGAW 475 (757)
T ss_pred hhcCCc------------------------chhhhHHHHHHHHHHhhccc------------cCcHHHHHH--hhhhHHH
Confidence 998764 13368899999999985211 156665555 9999999
Q ss_pred HHHHHHHHHHhhhhcCcchHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 002911 562 VACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCR 641 (867)
Q Consensus 562 la~~l~kl~~r~~~~~~~~~~~n~~~a~~~~i~~~~l~~~~~~~~~~~id~d~~~ri~~~~~~l~~~~~~~~~~~~~~~~ 641 (867)
|++.+++++.|+. +.++.+.+..++++...++..|+.++.++++.|++.+.+..
T Consensus 476 l~ge~~~~i~r~~--------------~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~------------ 529 (757)
T COG5096 476 LLGEFSDIIPRLE--------------PELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCN------------ 529 (757)
T ss_pred hHHHHHHHHhhhh--------------HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhcc------------
Confidence 9999999998877 66788999999999999999999999999999987544311
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccccccCCCcccchhhhhHHHHHHhcCCccCCcchhhhhhhhcc
Q 002911 642 QSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQL 721 (867)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~f~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~l~~v~ql 721 (867)
+ +.|.+++++++..-.. .|+..++.. .+.. +. +|+
T Consensus 530 ------------------------~--~~d~~v~~~~~~~v~~-----------~DlRDra~m--y~~~----ls--t~~ 564 (757)
T COG5096 530 ------------------------S--ELDQDVLRRCFDYVLV-----------PDLRDRARM--YSRL----LS--TPL 564 (757)
T ss_pred ------------------------c--hhccHHHHHHHhccCC-----------hhHHHHHHH--HHHH----hc--CCC
Confidence 1 4566677777743211 133322221 1111 11 899
Q ss_pred cCCCCcceEEEEeeeecceeEEEEEEeecCcccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecccceE
Q 002911 722 TGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVI 801 (867)
Q Consensus 722 tg~sDpvY~Ea~v~v~~~di~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste~g~i 801 (867)
+||+||||+|++.++.||||++|.+.+|||+++|||+.++| |+|+++.+..|++.+++||+++..+.++|++++++|+|
T Consensus 565 ~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t~~~l~nl~~~~-t~~~l~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~i 643 (757)
T COG5096 565 PEFSDPILCEAKKSNSQFEIILSALLTNQTPELLENLRLDF-TLGTLSTIPLKPIFNLRKGAVVLQQVTVKKPNAELGFI 643 (757)
T ss_pred ccccchhhhcccccccchhhhhhhhccccCHHHHHhhhccc-cccceeccCCCCcccCCCCceeeeeeeeeccchhhhhh
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEEEEEecCCccccceEEccccccccccccccCCCCcHHHHhhccccccceeEEeec
Q 002911 802 FGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLAL 858 (867)
Q Consensus 802 fg~i~y~~~~~~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~feWENki~v~t 858 (867)
|||+.|++.++++...+++||.++++++|++|++..+..||.||.++|||||++++|
T Consensus 644 ~gn~~~~~a~~~~~~~~~~~d~~~s~~~~~~~~t~~e~~~~~~~~~~e~e~~~~~~~ 700 (757)
T COG5096 644 TGNINPSGAANEDLRDINLNDSINSISGFVNPRTVDEDYFRELWKMDEFENKIDESS 700 (757)
T ss_pred ccCccCCccccccccccccCCCccchhccccceecccccccccccccccccccCccc
Confidence 999999988887888999999999999999999999999999999999999999988
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=4.6e-68 Score=632.55 Aligned_cols=441 Identities=19% Similarity=0.345 Sum_probs=391.2
Q ss_pred CcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch-
Q 002911 15 TPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE- 93 (867)
Q Consensus 15 ~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E- 93 (867)
.+.+.+|||+.|++++..+|+++|||+|++|++|+|++++||+||+ +++|+|+++|||+|+||..|++.+ ||
T Consensus 30 ~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk-~~~S~d~elKKLvYLYL~~ya~~~------pel 102 (746)
T PTZ00429 30 RRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVK-LAPSTDLELKKLVYLYVLSTARLQ------PEK 102 (746)
T ss_pred ccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcccC------hHH
Confidence 3568999999999999999999999999999999999999999999 679999999999999999996655 45
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc--h
Q 002911 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD--A 171 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d--~ 171 (867)
++|+||+|+||++||||+|||+|||+||+|+.++++++++++|++++.|++|||||+|++|++|+|+ .+|+++++ +
T Consensus 103 alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~--~~pelv~~~~~ 180 (746)
T PTZ00429 103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH--DDMQLFYQQDF 180 (746)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh--hCcccccccch
Confidence 6999999999999999999999999999999999999999999999999999999999999999999 89998764 5
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcchhh------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHH
Q 002911 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIK 245 (867)
Q Consensus 172 ~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~ 245 (867)
.+.+.++| .|+|+.|++||+.+|.+|+... ...++.++++.+++++||.|+.+|+++.+|.+.+..+...+++
T Consensus 181 ~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 181 KKDLVELL-NDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLT 259 (746)
T ss_pred HHHHHHHh-cCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 67777766 8999999999999999997543 2455667777788899999999999999998888888899999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCC--hHHHHHH----HHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 002911 246 IIISLLNAPSTAVIYECAGTLVSLSSA--PTAIRAA----ANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIM 319 (867)
Q Consensus 246 ~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~~lk~a----a~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~ 319 (867)
.+.+.|+++|++|+++|+++++++.+. +..++.+ ..+++.+ .++++|+||++|++|..|..++|.+|++|..
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVIFPNLLRTNLD 337 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999764 4555543 3556665 4678999999999999999999999999966
Q ss_pred hheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHH
Q 002911 320 DVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHL 399 (867)
Q Consensus 320 ~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~ 399 (867)
.|+ |+.+|+.+||++||++|+.|+|++|++.|+++|.++.. +.|.+|++++|++||.||.|||..+.||+++
T Consensus 338 ~Ff-~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~-------d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~ 409 (746)
T PTZ00429 338 SFY-VRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYAS-------GVDMVFVVEVVRAIASLAIKVDSVAPDCANL 409 (746)
T ss_pred hhh-cccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhh-------cCCHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 655 77777779999999999999999999999988775432 4578999999999999999999999999999
Q ss_pred HHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHh--cccchHhHHHHHhhHhhccCCCCCcHHHHHHHHHHh
Q 002911 400 LMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNF--YQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQC 477 (867)
Q Consensus 400 Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L--~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i~~~ 477 (867)
|++++.+..++ ..+++.+++++++++|+. .++..|++.+ +.+.+++++++++||+||||+.+++ +.+.|+..
T Consensus 410 Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~--~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~ 483 (746)
T PTZ00429 410 LLQIVDRRPEL-LPQVVTAAKDIVRKYPEL--LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRF 483 (746)
T ss_pred HHHHhcCCchh-HHHHHHHHHHHHHHCccH--HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHH
Confidence 99999887665 568999999999999985 4788998876 7889999999999999999997765 55667766
Q ss_pred hCCC
Q 002911 478 LGEL 481 (867)
Q Consensus 478 l~~~ 481 (867)
++.|
T Consensus 484 i~~f 487 (746)
T PTZ00429 484 IDTI 487 (746)
T ss_pred Hhhh
Confidence 7655
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=6.8e-62 Score=571.56 Aligned_cols=445 Identities=29% Similarity=0.506 Sum_probs=393.1
Q ss_pred cHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH
Q 002911 18 IANEIKEALEGN--DVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (867)
Q Consensus 18 ~~~eIr~~L~s~--~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi 95 (867)
..+|+++.+++. +.++|+++|+|+++++++|+|+++++|+||+ +++|+|+++||+||+||+.+...++ +.++
T Consensus 5 ~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~~~~-----~~~~ 78 (526)
T PF01602_consen 5 ISQELAKILNSFKIDISKKKEALKKLIYLMMLGYDISFLFMEVIK-LISSKDLELKRLGYLYLSLYLHEDP-----ELLI 78 (526)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---GSTHHHHHC-TCSSSSHHHHHHHHHHHHHHTTTSH-----HHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCchHHHHHHH-HhCCCCHHHHHHHHHHHHHHhhcch-----hHHH
Confidence 457888888888 8899999999999999999999999999999 5689999999999999999955543 2379
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc-hHHH
Q 002911 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEM 174 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d-~~~l 174 (867)
|++|+++|||+||||++||+|||+||+++++++++.+.+.|.+++.|++|||||+|++|++++|+ .+|+++++ +.+.
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~--~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYR--KDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCHCCHHGGHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhc--cCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999988 5888
Q ss_pred HHHHHccCCChhHHHHHHHHHHhc-chhh----HHHHHHHHhhhc-CccchHHHHHHHHHHHHhhhcCchhH--HHHHHH
Q 002911 175 IEKVLSTEQDPSAKRNAFLMLFTC-DQDR----AINYLLTHVDRV-SEWGELLQMVVLELIRKVCRTNKGEK--GKYIKI 246 (867)
Q Consensus 175 l~~lL~~D~D~~v~~~A~~~L~ei-~~~~----al~~L~~~l~~i-~~~~p~lQ~~iL~ll~~~~~~~p~~~--~~li~~ 246 (867)
+.++| .|+|++|+.+|+.++.++ .+++ .++.+...+.++ +.++||+|+.++++++++++.++... ..+++.
T Consensus 157 l~~lL-~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~ 235 (526)
T PF01602_consen 157 LKQLL-SDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEP 235 (526)
T ss_dssp HHHHT-THSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHH
T ss_pred Hhhhc-cCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHH
Confidence 88876 899999999999999999 4443 245555555443 88999999999999999999999888 789999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheeccc
Q 002911 247 IISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALN 326 (867)
Q Consensus 247 L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~ 326 (867)
+.+++++.+++|+|||++++..+.+.+..++.++.++++++. ++|+|+||++|+.|..|...+|..+......++.+..
T Consensus 236 l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~ 314 (526)
T PF01602_consen 236 LLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLY 314 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHC
T ss_pred HHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhhhhhhhhheecC
Confidence 999999999999999999999999988778889999988875 8999999999999999999885555443344444555
Q ss_pred CCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcC
Q 002911 327 SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD 406 (867)
Q Consensus 327 d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~ 406 (867)
++|.+||++||++++.+++++|+..|+++|.+++... .+.+|++.++++|+.++.+|++...|+++++++++..
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~------~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSEL------SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC
T ss_pred CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhc------cchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999887432 2678999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCc---HHHHHHHHHHhh
Q 002911 407 SNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE---VENGIATIKQCL 478 (867)
Q Consensus 407 ~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~---i~~~~~~i~~~l 478 (867)
+++++..+++..+++++.++|+.+..++.+|++.++++.+++++++++|++|||++..++ +.+.++.+.+.+
T Consensus 389 ~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~ 463 (526)
T PF01602_consen 389 SGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENF 463 (526)
T ss_dssp TGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999998 566666665544
No 5
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-60 Score=536.85 Aligned_cols=443 Identities=19% Similarity=0.368 Sum_probs=400.8
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHH
Q 002911 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL 96 (867)
Q Consensus 17 ~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiL 96 (867)
.+-++|++.|.|+++..|++|||+||.+|+.|+|++.+|+.|+|+| +|+|.++|||+|+|+-+|++.+|| +.+|
T Consensus 35 ~~~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNV-askn~EVKkLVyvYLlrYAEeqpd-----LALL 108 (968)
T KOG1060|consen 35 IRHDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNV-ASKNIEVKKLVYVYLLRYAEEQPD-----LALL 108 (968)
T ss_pred CChHHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh-hccCHHHHHHHHHHHHHHhhcCCC-----ceee
Confidence 4678999999999999999999999999999999999999999988 899999999999999999988875 3579
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
.+|+|||+|.|||+.+||.|||.|++||.|.+++.++-+|++|..|.+|||||.|+.|+.|+|. .+|+.-+...++|+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs--Ld~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS--LDPEQKDQLEEVIK 186 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc--CChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 68888777889998
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhh----cCccchHHHHHHHHHHHHhhhc---Cc------------
Q 002911 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDR----VSEWGELLQMVVLELIRKVCRT---NK------------ 237 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~----i~~~~p~lQ~~iL~ll~~~~~~---~p------------ 237 (867)
.+| +|.+|.|+++|+.++.++||++ ++.|+..++. +++.++|.|+.++++|.||||. +|
T Consensus 187 ~LL-aD~splVvgsAv~AF~evCPer-ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~ 264 (968)
T KOG1060|consen 187 KLL-ADRSPLVVGSAVMAFEEVCPER-LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR 264 (968)
T ss_pred HHh-cCCCCcchhHHHHHHHHhchhH-HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence 866 9999999999999999999997 5555444432 4677899999999999999984 22
Q ss_pred ------------------hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHH
Q 002911 238 ------------------GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIV 299 (867)
Q Consensus 238 ------------------~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~iv 299 (867)
.....+++...++|+|.|++|++.+|+++.++.+. ..+...+.+|+++|.+ .+.+||++
T Consensus 265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-~~~~~i~kaLvrLLrs--~~~vqyvv 341 (968)
T KOG1060|consen 265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-NQVTKIAKALVRLLRS--NREVQYVV 341 (968)
T ss_pred cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-HHHHHHHHHHHHHHhc--CCcchhhh
Confidence 12466889999999999999999999999999874 3677789999998864 46899999
Q ss_pred HHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHH
Q 002911 300 LDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLI 379 (867)
Q Consensus 300 L~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI 379 (867)
|+.+..|..+.|.+|.||...|+ +.+.++..++..+|++|..|+|+.|+..|+.+|..|+. +.+.+|....|
T Consensus 342 L~nIa~~s~~~~~lF~P~lKsFf-v~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~-------s~d~~faa~aV 413 (968)
T KOG1060|consen 342 LQNIATISIKRPTLFEPHLKSFF-VRSSDPTQVKILKLEILSNLANESNISEILRELQTYIK-------SSDRSFAAAAV 413 (968)
T ss_pred HHHHHHHHhcchhhhhhhhhceE-eecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHh-------cCchhHHHHHH
Confidence 99999999999999999999988 77777889999999999999999999999987764433 23447999999
Q ss_pred HHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhc
Q 002911 380 QAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGE 459 (867)
Q Consensus 380 ~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGE 459 (867)
++||+||.+.-.+.+.|++.|+.+++..+..+..+++..|+.+++++|..+.+++.+|.+.++.+..+.++++++|++||
T Consensus 414 ~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige 493 (968)
T KOG1060|consen 414 KAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGE 493 (968)
T ss_pred HHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHhhCCCC
Q 002911 460 YCQSLSEVENGIATIKQCLGELP 482 (867)
Q Consensus 460 Y~~~~~~i~~~~~~i~~~l~~~p 482 (867)
||..++.+ +.+.+|...+.|-
T Consensus 494 ~~e~vpri--~PDVLR~laksFs 514 (968)
T KOG1060|consen 494 YCEIVPRI--APDVLRKLAKSFS 514 (968)
T ss_pred hhhhcchh--chHHHHHHHHhhc
Confidence 99998865 6777887777773
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-60 Score=537.10 Aligned_cols=431 Identities=20% Similarity=0.330 Sum_probs=385.8
Q ss_pred ccHHHHHHHhcC--CChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch-
Q 002911 17 AIANEIKEALEG--NDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE- 93 (867)
Q Consensus 17 ~~~~eIr~~L~s--~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E- 93 (867)
.+.+.||+.++. .+...+++.|.||+|++|+|||.+|++|+++| +.+|.++..||+|||++..+ +|++ +|
T Consensus 32 kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclK-Lias~~f~dKRiGYLaamLl--LdE~----qdv 104 (866)
T KOG1062|consen 32 KECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLK-LIASDNFLDKRIGYLAAMLL--LDER----QDL 104 (866)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHH-HhcCCCchHHHHHHHHHHHH--hccc----hHH
Confidence 477899999999 56788899999999999999999999999999 66999999999999999999 8885 45
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHH
Q 002911 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ 173 (867)
++|++|+++|||+|+|.|+.|+||.+||+|..|||++.|.|.|.+.+.|++|||||+|++|.+|+.+ +.|++.+.+..
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f~~ 182 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHFVI 182 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHhhH
Confidence 4899999999999999999999999999999999999999999999999999999999999999999 89999887766
Q ss_pred HHHHHHccCCChhHHHHHHHHHHhcchhh--HHHH-------HHHHhhhc------------CccchHHHHHHHHHHHHh
Q 002911 174 MIEKVLSTEQDPSAKRNAFLMLFTCDQDR--AINY-------LLTHVDRV------------SEWGELLQMVVLELIRKV 232 (867)
Q Consensus 174 ll~~lL~~D~D~~v~~~A~~~L~ei~~~~--al~~-------L~~~l~~i------------~~~~p~lQ~~iL~ll~~~ 232 (867)
--.++| .|+|++|..+++..+.+++... ++.| |..+++++ +..+||+|+.+|++|+-+
T Consensus 183 ~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 183 AFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 666655 8999999999999888876542 3333 44455543 368999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHHcCC------ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002911 233 CRTNKGEKGKYIKIIISLLNAP------STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (867)
Q Consensus 233 ~~~~p~~~~~li~~L~~lL~s~------s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L 306 (867)
++.++...+.+-++|.++...+ ..||.|||+.|++.+.+++ .++.+|..+++.|+.++|+|+||++|..|.+.
T Consensus 262 Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~-~LrvlainiLgkFL~n~d~NirYvaLn~L~r~ 340 (866)
T KOG1062|consen 262 GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS-GLRVLAINILGKFLLNRDNNIRYVALNMLLRV 340 (866)
T ss_pred cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHhcCCccceeeeehhhHHhh
Confidence 9999999999999999998864 3689999999999998876 46666777788888999999999999999999
Q ss_pred HhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhH
Q 002911 307 RSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 307 ~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la 386 (867)
.+..|.++++|.+.|+.||.|+|.+|||+|||+++.|+|+.||..++++|+++|... +.+|+..++..|..++
T Consensus 341 V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~-------d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 341 VQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS-------DEDFKADIASKIAELA 413 (866)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887652 5799999999999999
Q ss_pred ccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH-HhCcccHHHHHHHHHHHhcc-----cchHhHHHHHhhHhhcc
Q 002911 387 IKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREII-EMNPKLRVSIITRLLDNFYQ-----IRAARVCTCALWIIGEY 460 (867)
Q Consensus 387 ~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii-~~~p~lr~~il~~L~~~L~~-----i~~~~v~~~alWiLGEY 460 (867)
++|++.-.|.+++++..|+..|+++..+++.-+-.++ +-+++.+++.+.+|...+.. +..+...++++|+||||
T Consensus 414 EkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEY 493 (866)
T KOG1062|consen 414 EKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEY 493 (866)
T ss_pred HhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhh
Confidence 9999999999999999999999999999996544454 45599999999999987743 77788999999999999
Q ss_pred CCCCC
Q 002911 461 CQSLS 465 (867)
Q Consensus 461 ~~~~~ 465 (867)
|+..-
T Consensus 494 Gdlll 498 (866)
T KOG1062|consen 494 GDLLL 498 (866)
T ss_pred hHHhh
Confidence 97543
No 7
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=100.00 E-value=1.9e-57 Score=429.26 Aligned_cols=140 Identities=69% Similarity=0.995 Sum_probs=131.4
Q ss_pred CCCccccccccccccCCCcccchhhhhHHHHHHhcCCccCCcchhhhhhhhcccCCCCcceEEEEeeeecceeEEEEEEe
Q 002911 669 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVI 748 (867)
Q Consensus 669 ~~d~~i~f~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~l~~v~qltg~sDpvY~Ea~v~v~~~di~ldvl~v 748 (867)
||||+|+||||+++++.+ ..+|++++||.+|+|....++++.+||+||+|||||||||||||||+||||||+||||||
T Consensus 1 q~D~~i~f~ql~~~~~~~--~~~~~~~~dl~~a~g~~~~~~~~~skL~kv~QLTGfsDPvYaEA~v~v~q~DIvLDvllv 78 (140)
T PF07718_consen 1 QPDDLISFRQLKGKKALS--GDEDDFEDDLSRATGSIDKSEDFSSKLNKVVQLTGFSDPVYAEAYVTVHQYDIVLDVLLV 78 (140)
T ss_pred CCCCcEeheccccCcccc--ccchhhhhhHHHhhCCccccchhhhhhccEEecccCCCCeEEEEEEEEEeeeEEEEEEEE
Confidence 799999999999888632 244688999999998666677889999999999999999999999999999999999999
Q ss_pred ecCcccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecccceEEEEEEEecC
Q 002911 749 NRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETS 810 (867)
Q Consensus 749 Nqt~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste~g~ifg~i~y~~~ 810 (867)
|||++|||||+|||+|+||||+|||||++||+||+|+++|++|||+|||||+|||||+||++
T Consensus 79 NqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~~ 140 (140)
T PF07718_consen 79 NQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDGS 140 (140)
T ss_pred eCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999973
No 8
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-53 Score=473.37 Aligned_cols=438 Identities=21% Similarity=0.340 Sum_probs=390.7
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHH
Q 002911 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILI 97 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv 97 (867)
.+.|+|+++.+.+...|.+|+.|+.|+.|.|+|++|.-|+++. +|+|..+..||.||+++..- ++++. +.++|.
T Consensus 37 ~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f~ive-Vmsssk~~~krigylaa~qS--f~~~t---dvlmL~ 110 (877)
T KOG1059|consen 37 CLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVE-VMSSSKFQQKRIGYLAASQS--FHDDT---DVLMLT 110 (877)
T ss_pred HHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhhhhhh-hhhhhhhHHHHHhHHHHHHh--hcCCc---cHHHHH
Confidence 5789999999999999999999999999999999999999998 89999999999999999886 55554 568999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc-hHHHHH
Q 002911 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEMIE 176 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d-~~~ll~ 176 (867)
+|.++|||+++|.|-.|.||..||.+.+|+++..|.+.|..+|+|..|||||+|++.+||+|. ++|+.+.. +|.+.+
T Consensus 111 tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFL--kYPeAlr~~FprL~E 188 (877)
T KOG1059|consen 111 TNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFL--KYPEALRPCFPRLVE 188 (877)
T ss_pred HHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH--hhhHhHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99987654 678888
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHH------HHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 002911 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYL------LTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISL 250 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L------~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~l 250 (867)
+ | .|+||+|+.+|+.++||+...++-+|| .+++ ..+.++|+.+++|++|+.+.+.+|+...++++.|.++
T Consensus 189 k-L-eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkll--ttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~l 264 (877)
T KOG1059|consen 189 K-L-EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLL--VTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITEL 264 (877)
T ss_pred h-c-cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHH--hccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHH
Confidence 8 4 899999999999999999876654443 3333 2467899999999999999999999999999999999
Q ss_pred HcCCCh-HHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhhee
Q 002911 251 LNAPST-AVIYECAGTLVSL------SSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR 323 (867)
Q Consensus 251 L~s~s~-aV~~eaa~tL~~L------s~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~ 323 (867)
++|++. +++|||++|++.- +.+...++.|+.++ +.|+.++|+|+||++|-.+.+|...||..++.|..-|++
T Consensus 265 i~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKL-r~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlr 343 (877)
T KOG1059|consen 265 MESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKL-RIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILR 343 (877)
T ss_pred HHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHH-hhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHH
Confidence 999987 5999999999875 23445678888885 566789999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc--CC--ccHHHHHHH
Q 002911 324 ALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK--FP--EVASTVVHL 399 (867)
Q Consensus 324 ~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k--f~--~~a~~~v~~ 399 (867)
||+|.|.+||.+||++++.|++++|+.+||+.|++++.+. .+..||.+++..|-.+|.+ |. ...+||+.+
T Consensus 344 cL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~a------e~t~yrdell~~II~iCS~snY~~ItdFEWYlsV 417 (877)
T KOG1059|consen 344 CLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKA------EGTNYRDELLTRIISICSQSNYQYITDFEWYLSV 417 (877)
T ss_pred HhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999998863 2468999999999777653 44 446899999
Q ss_pred HHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhccc----------chHhHHHHHhhHhhccCCCCCcHHH
Q 002911 400 LMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQI----------RAARVCTCALWIIGEYCQSLSEVEN 469 (867)
Q Consensus 400 Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i----------~~~~v~~~alWiLGEY~~~~~~i~~ 469 (867)
|+++..-.+..-...+...+.++.-+.|..|+..+..+...+.+- .-.+++.+|+||+|||+++.++...
T Consensus 418 lveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~ 497 (877)
T KOG1059|consen 418 LVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPND 497 (877)
T ss_pred HHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHH
Confidence 999999888777788889999999999999999999888887632 1368999999999999999998877
Q ss_pred HHHHH
Q 002911 470 GIATI 474 (867)
Q Consensus 470 ~~~~i 474 (867)
.++.+
T Consensus 498 ~leam 502 (877)
T KOG1059|consen 498 TLEAM 502 (877)
T ss_pred HHHHH
Confidence 76665
No 9
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-52 Score=478.63 Aligned_cols=444 Identities=20% Similarity=0.345 Sum_probs=396.6
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH
Q 002911 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (867)
Q Consensus 16 ~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi 95 (867)
..++.++|+.|.+...++|++++||+|..|..|.|+|.+|++|++ +|++.|.++|||+|+|+..|++..|++ .+
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk-~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~ 85 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVK-CMQTRDLELKKLVYLYLMNYAKGKPDL-----AI 85 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHh-hcccCCchHHHHHHHHHHHhhccCchH-----HH
Confidence 457889999998888899999999999999999999999999999 789999999999999999998877653 58
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc--hHH
Q 002911 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD--APE 173 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d--~~~ 173 (867)
+++|++.||..+|||.||++|+|++|.++.+.+.+.+..++++|++|.+|||||+|+.|+.++|. .++++..+ +.+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~ 163 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVD 163 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 78888776 468
Q ss_pred HHHHHHccCCChhHHHHHHHHHHhcchhhH--------HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHH
Q 002911 174 MIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--------INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIK 245 (867)
Q Consensus 174 ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a--------l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~ 245 (867)
.+..++ .|+||.|+.||+.+|.+|....+ .+++...+..++...+|.|+.+|+.+.+|.+.++.+...+++
T Consensus 164 ~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~ 242 (734)
T KOG1061|consen 164 ALKDLL-SDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICE 242 (734)
T ss_pred HHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHH
Confidence 888876 79999999999999999864432 344556666677788999999999999999998889999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002911 246 IIISLLNAPSTAVIYECAGTLVSLSSA-----PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (867)
Q Consensus 246 ~L~~lL~s~s~aV~~eaa~tL~~Ls~~-----p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~ 320 (867)
.+.+.|++.+++|+..+.+.++++... ....+....+++.++. +.+.+.|++|+++..+.++.|++|..+...
T Consensus 243 r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls--~~~e~qyvaLrNi~lil~~~p~~~~~~~~~ 320 (734)
T KOG1061|consen 243 RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLS--SESEIQYVALRNINLILQKRPEILKVEIKV 320 (734)
T ss_pred HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeec--ccchhhHHHHhhHHHHHHhChHHHHhHhHe
Confidence 999999999999999999999987542 1345556677776653 445999999999999999999988877776
Q ss_pred heecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHH
Q 002911 321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL 400 (867)
Q Consensus 321 il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~L 400 (867)
|+ |-.+++.|||..+|+++..+++..|+.+++.+|+.| .. +.|.+|.+++|++||.||.++++. ..||+.|
T Consensus 321 Ff-~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY-at------evD~~fvrkaIraig~~aik~e~~-~~cv~~l 391 (734)
T KOG1061|consen 321 FF-CKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY-AT------EVDVDFVRKAVRAIGRLAIKAEQS-NDCVSIL 391 (734)
T ss_pred ee-eecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh-hh------hhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHH
Confidence 65 888889999999999999999999999999987633 22 568999999999999999999887 8899999
Q ss_pred HHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHHHHHhhC
Q 002911 401 MDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLG 479 (867)
Q Consensus 401 l~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i~~~l~ 479 (867)
++++....+++.+|++..++++.+++|+..+.++..++..++++.+|+++.+.+||+|||++.+++..+.++.+.+.+.
T Consensus 392 Lell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~ 470 (734)
T KOG1061|consen 392 LELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFK 470 (734)
T ss_pred HHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987777666654443
No 10
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-48 Score=433.90 Aligned_cols=433 Identities=18% Similarity=0.279 Sum_probs=378.8
Q ss_pred ccHHHHHHHhcCC---ChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCch
Q 002911 17 AIANEIKEALEGN---DVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (867)
Q Consensus 17 ~~~~eIr~~L~s~---~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E 93 (867)
.++..||..|++. +.+.|++++.|++|+.++|+|+.|+.|+.++ +++|+.+..|.+||++.+.+ .+++.++
T Consensus 35 kELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~-LLss~kysEKqIGYl~is~L--~n~n~dl--- 108 (938)
T KOG1077|consen 35 KELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVN-LLSSNKYSEKQIGYLFISLL--LNENSDL--- 108 (938)
T ss_pred HHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHH-HhhcCCccHHHHhHHHHHHH--HhcchHH---
Confidence 4678899999987 5799999999999999999999999999998 66999999999999999999 6665433
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhccCCCcccccc-
Q 002911 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQH--RHPYIRRNAILAVMAIYKLPQGEQLLVD- 170 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d--~~pyVRK~A~lal~kI~~l~~~p~li~d- 170 (867)
|-|++|+++|||.+.||...++||.++++|+..++.+.+.++|-+.|.+ ..+||||+|++|+.++|+ .+|++++.
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r--~spDl~~~~ 186 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFR--KSPDLVNPG 186 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHh--cCccccChh
Confidence 6799999999999999999999999999999999999999999999965 588999999999999999 99999974
Q ss_pred -hHHHHHHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHhhh----------cCccchHHHHHHHHHH
Q 002911 171 -APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDR----------VSEWGELLQMVVLELI 229 (867)
Q Consensus 171 -~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~----------al~~L~~~l~~----------i~~~~p~lQ~~iL~ll 229 (867)
|.+.|-.+| +|+|.+|..+|..++.-+.... |+..|..+... -..+.||+|++++++|
T Consensus 187 ~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlL 265 (938)
T KOG1077|consen 187 EWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLL 265 (938)
T ss_pred hHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHH
Confidence 777777765 8999999888887776654322 23333332211 1357899999999999
Q ss_pred HHhh-hcCchhHHHHHHHHHHHHcCC--------------ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHH
Q 002911 230 RKVC-RTNKGEKGKYIKIIISLLNAP--------------STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNN 294 (867)
Q Consensus 230 ~~~~-~~~p~~~~~li~~L~~lL~s~--------------s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~N 294 (867)
..|- +.||..+.++.+++..+|+-. .++|.|||++.++++.+.|+.+..++..+.+++ ++...|
T Consensus 266 q~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl-s~rE~N 344 (938)
T KOG1077|consen 266 QIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL-SHRETN 344 (938)
T ss_pred HhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-hccccc
Confidence 9883 347788999999999988753 258999999999999999999988888876655 789999
Q ss_pred HHHHHHHHHHHHHhhCh--hhHHHHHHhheeccc-CCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCC
Q 002911 295 VKLIVLDRLNELRSSHR--DIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKN 371 (867)
Q Consensus 295 vk~ivL~~L~~L~~~~p--~~l~~~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d 371 (867)
+||++|+.+-.|....+ +.+..|...|+..|+ ++|.+||++++|+|+.||+.+|+++||.+|+.|+.. .+
T Consensus 345 iRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~t-------Ad 417 (938)
T KOG1077|consen 345 IRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET-------AD 417 (938)
T ss_pred chhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh-------cc
Confidence 99999999999987543 466778888888898 999999999999999999999999999999988764 35
Q ss_pred HHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccch-HhHH
Q 002911 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRA-ARVC 450 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~-~~v~ 450 (867)
...|.+++-++..+++||+....|||++.+++++..++++..|+|..+.+++.++++++.++.+++++.|....- ....
T Consensus 418 ~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mV 497 (938)
T KOG1077|consen 418 YSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMV 497 (938)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987553 4578
Q ss_pred HHHhhHhhccCCCCCc
Q 002911 451 TCALWIIGEYCQSLSE 466 (867)
Q Consensus 451 ~~alWiLGEY~~~~~~ 466 (867)
++..+|+||||+.+.+
T Consensus 498 KvggyiLGEfg~LIa~ 513 (938)
T KOG1077|consen 498 KVGGYILGEFGNLIAD 513 (938)
T ss_pred HhhhhhhhhhhhhhcC
Confidence 8999999999998764
No 11
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-29 Score=287.28 Aligned_cols=442 Identities=17% Similarity=0.288 Sum_probs=373.9
Q ss_pred cHHHHHHHhcCC-ChHHHHHHHHHHHHHHhCCCCCC-----chhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCC
Q 002911 18 IANEIKEALEGN-DVPAKVDAMKKAIMLLLNGETLP-----QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (867)
Q Consensus 18 ~~~eIr~~L~s~-~~~~K~~alkklI~l~~~G~d~s-----~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~ 91 (867)
-++|-|..=+++ +..+.+..|.||+|+..+|+.++ .+||.+.| +.+|+|..+||+.|+....++...
T Consensus 23 vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tK-lfQskd~~LRr~vYl~Ikels~is------ 95 (865)
T KOG1078|consen 23 VLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITK-LFQSKDVSLRRMVYLAIKELSKIS------ 95 (865)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH-HHhhcCHHHHHHHHHHHhhccccc------
Confidence 357888444444 45666799999999999998765 68999999 679999999999999999886665
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch
Q 002911 92 PEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA 171 (867)
Q Consensus 92 ~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~ 171 (867)
+|.++++++++||.+..++.+|+.|||.||+|....++......+++++.|++|.|+-.|+..-++++. ..++.+..|
T Consensus 96 edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~--~~~~~vkrw 173 (865)
T KOG1078|consen 96 EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLP--ISFDVVKRW 173 (865)
T ss_pred hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhc--ccHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999999999999999999988 788888888
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcchh--hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 002911 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIIS 249 (867)
Q Consensus 172 ~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~--~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~ 249 (867)
.+.++... .+.|..+...|+-+|.++.+. .|+..+.+.+..-...+|+.++..++...+....++.....+.+.+..
T Consensus 174 ~neiqea~-~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s 252 (865)
T KOG1078|consen 174 ANEVQEAV-NSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLES 252 (865)
T ss_pred HHhhhhcc-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHH
Confidence 87777765 566678999999999999653 356666655554456788888888888888776676666778899999
Q ss_pred HHcCCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCC
Q 002911 250 LLNAPSTAVIYECAGTLVSLSSA-PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSP 328 (867)
Q Consensus 250 lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~ 328 (867)
+|.+..-+|.||||+++..+..- +..+.- +...+++|++++..-+||.+++.|++++..||+...-.-.++-.+.+|.
T Consensus 253 ~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~ 331 (865)
T KOG1078|consen 253 CLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDS 331 (865)
T ss_pred HHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhccc
Confidence 99999999999999999999753 222222 3445678889999999999999999999999999888888888889999
Q ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCC
Q 002911 329 NLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN 408 (867)
Q Consensus 329 d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~ 408 (867)
+.+|...|+..|++-+++.|++.+++.+- .+.. |-+.+|+.-.+++|..++.+||-....++++|.++|.+.|
T Consensus 332 NrsIat~AITtLLKTG~e~sv~rLm~qI~----~fv~---disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG 404 (865)
T KOG1078|consen 332 NRSIATLAITTLLKTGTESSVDRLMKQIS----SFVS---DISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG 404 (865)
T ss_pred ccchhHHHHHHHHHhcchhHHHHHHHHHH----HHHH---hccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998766544 4433 4566899999999999999999999999999999999876
Q ss_pred cc-cHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHHHHHh
Q 002911 409 VA-SAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQC 477 (867)
Q Consensus 409 ~~-v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~i~~~ 477 (867)
.. -....+..|..+++.+|+.++..+..||+.++++...++--.++.++|.-|...++....+.+|+.-
T Consensus 405 g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR 474 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR 474 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhh
Confidence 43 3445678888899999999999999999999999999999999999999998888776666666543
No 12
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.95 E-value=4.2e-25 Score=244.42 Aligned_cols=444 Identities=14% Similarity=0.176 Sum_probs=357.7
Q ss_pred cHHHHHHHhcCCC--hHHHHHHHHHHHHHHhCCCCCC-----chhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCC
Q 002911 18 IANEIKEALEGND--VPAKVDAMKKAIMLLLNGETLP-----QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (867)
Q Consensus 18 ~~~eIr~~L~s~~--~~~K~~alkklI~l~~~G~d~s-----~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l 90 (867)
-.++.++.|.+.. ...-+.++.++.|+...|+-.+ .+|+.|.| +.+++|..+|..+|+++..+.+..+
T Consensus 23 ~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~K-lFQhkd~~Lrq~VY~aIkelS~~te---- 97 (898)
T COG5240 23 LLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILK-LFQHKDLYLRQCVYSAIKELSKLTE---- 97 (898)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHhhcch----
Confidence 3578888888774 4556699999999999999774 58999999 6799999999999999999977654
Q ss_pred CchHHHHHHHHHHhcCCCCH-HHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc
Q 002911 91 LPEMILICQNLRNNLQHPNE-YIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (867)
Q Consensus 91 ~~EmiLv~NsL~KDL~~pNe-~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~ 169 (867)
+.++.+|++.||++...| .+|..|+|.|.++...+++......+.+...++++.+|..|+...|+++- .....+.
T Consensus 98 --dvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp--~~~~~~~ 173 (898)
T COG5240 98 --DVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLP--NNFNQTK 173 (898)
T ss_pred --hhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhcc--ccHHHHH
Confidence 578999999999999877 99999999999999999999999999999999999999999988888877 5555554
Q ss_pred chHHHHHHHHc---------------cCCChhHHHHHHHHHHhcchhh--HHHHHHHHhhh-cCccchHHHHHHHHHHHH
Q 002911 170 DAPEMIEKVLS---------------TEQDPSAKRNAFLMLFTCDQDR--AINYLLTHVDR-VSEWGELLQMVVLELIRK 231 (867)
Q Consensus 170 d~~~ll~~lL~---------------~D~D~~v~~~A~~~L~ei~~~~--al~~L~~~l~~-i~~~~p~lQ~~iL~ll~~ 231 (867)
.|....+...+ -..++.....|+-.|..+.+.+ |...|..++.. ....+...-+.+++....
T Consensus 174 rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ 253 (898)
T COG5240 174 RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVE 253 (898)
T ss_pred HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHH
Confidence 44322222110 1234555667777777766543 22333333321 122233334445555555
Q ss_pred hhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 232 VCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS---APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 232 ~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~---~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
+...||....++...|...|.+...+|.+|+|+.++.++. .++.+..+++.+ +.|++++..-.||.+++.|++|+.
T Consensus 254 ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L-~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 254 LLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSL-RTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHh
Confidence 5566888888889999999999999999999999999753 456677777665 445577778889999999999999
Q ss_pred hChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc
Q 002911 309 SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (867)
Q Consensus 309 ~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k 388 (867)
.+|+.+.-.-..+-.+.+|.+..|..-|+..|++-++++|++.+++.+-..+. |-+..|+.-+|.++..++.+
T Consensus 333 ~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvh-------D~SD~FKiI~ida~rsLsl~ 405 (898)
T COG5240 333 KYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVH-------DMSDGFKIIAIDALRSLSLL 405 (898)
T ss_pred hCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHH-------hhccCceEEeHHHHHHHHhh
Confidence 99998776666777788999999999999999999999999999987664433 33457999999999999999
Q ss_pred CCccHHHHHHHHHHHHcCCCccc-HHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcH
Q 002911 389 FPEVASTVVHLLMDFLGDSNVAS-AIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEV 467 (867)
Q Consensus 389 f~~~a~~~v~~Ll~lL~~~~~~v-~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i 467 (867)
||.....++++|.+.|.+.|..- ...++..+.++++..|+.++.+++.||+.++++..+++...++.|+|+-+...++.
T Consensus 406 Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P 485 (898)
T COG5240 406 FPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP 485 (898)
T ss_pred CcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc
Confidence 99999999999999998877644 44567899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhh
Q 002911 468 ENGIATIKQCL 478 (867)
Q Consensus 468 ~~~~~~i~~~l 478 (867)
...+.+|+.-+
T Consensus 486 ~~yvrhIyNR~ 496 (898)
T COG5240 486 GKYVRHIYNRL 496 (898)
T ss_pred chHHHHHHHHH
Confidence 88888887655
No 13
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=99.87 E-value=1.7e-23 Score=196.84 Aligned_cols=47 Identities=66% Similarity=1.251 Sum_probs=45.0
Q ss_pred ccceEEccccccccccccccCCCCcHHHHhhccccccceeEEeeccee
Q 002911 814 ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVSLALVSC 861 (867)
Q Consensus 814 ~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~feWENki~v~t~~~ 861 (867)
|++||+||||||||||||+||+|++.+||+||+||||||||+|+| ++
T Consensus 1 ~~~~viLNdIhIdImDyI~Pa~~~~~~FR~mW~eFEWENKi~V~t-~~ 47 (129)
T PF14806_consen 1 DRNCVILNDIHIDIMDYIKPATCSDEEFRSMWAEFEWENKISVNT-NI 47 (129)
T ss_pred CCcEEEcccceEcHHHhcCcccCCHHHHHHHHHhheeeeeEEEec-CC
Confidence 578999999999999999999999999999999999999999999 44
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.53 E-value=9.1e-12 Score=146.92 Aligned_cols=415 Identities=21% Similarity=0.271 Sum_probs=275.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHH---hhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH-
Q 002911 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVR---YVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI- 95 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk---~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi- 95 (867)
-++-+.+.+++...|+-+- +++...+..-+....-++. -=+.++|+..+-++.-++..+ .+ +|+.
T Consensus 45 ~~vi~l~~s~~~~~Krl~y---l~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i--~~------~~~~~ 113 (526)
T PF01602_consen 45 MEVIKLISSKDLELKRLGY---LYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI--RT------PEMAE 113 (526)
T ss_dssp HHHHCTCSSSSHHHHHHHH---HHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---S------HHHHH
T ss_pred HHHHHHhCCCCHHHHHHHH---HHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh--cc------cchhh
Confidence 4566667777776666543 2223333333333222332 224678888887777777666 33 3553
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHHH-HHHHHHHhcCCCChHHHHHHHHHHHHh-hccCCCc--cccc
Q 002911 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEP-LIPSVLQNLQHRHPYIRRNAILAVMAI-YKLPQGE--QLLV 169 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e~-L~~~V~~~L~d~~pyVRK~A~lal~kI-~~l~~~p--~li~ 169 (867)
-+.+.+.+-+.|++|+||-.|+-++.++- .|++++. +.+.+.++|.|++|-|+..|+.++..+ .. ... .+++
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~--~~~~~~~~~ 191 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCN--DDSYKSLIP 191 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCT--HHHHTTHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccC--cchhhhhHH
Confidence 45688888888999999998888888884 6888887 789999999989999999999888888 22 122 4678
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcchhh---H--HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHH
Q 002911 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR---A--INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYI 244 (867)
Q Consensus 170 d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~---a--l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li 244 (867)
.....+.+++ .+.+|-.+..++.+|..+.+.. + ...+..+...+...++-.+...++++..+.+. +......+
T Consensus 192 ~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~~ 269 (526)
T PF01602_consen 192 KLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PELLQKAI 269 (526)
T ss_dssp HHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHH
T ss_pred HHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hHHHHhhH
Confidence 8888887776 7888998888999888876532 2 12233333333355566677777777766553 33567788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhhee
Q 002911 245 KIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR 323 (867)
Q Consensus 245 ~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~ 323 (867)
+.+..+|.++++.++|-+..+|..+.. .+..+... ...+..+..+.|..+|..+|+.|..+.. +.-+...+..++.
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~-~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~Il~eL~~ 346 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQ-SLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKEILDELLK 346 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTH-HHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhhhh-hhhhheecCCCChhHHHHHHHHHhhccc--ccchhhHHHHHHH
Confidence 888899998888899998888888864 33445422 2223344457788899999998888864 3333444445555
Q ss_pred cc-cCCCHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHH
Q 002911 324 AL-NSPNLDIRRKTLDIVLELIT--PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL 400 (867)
Q Consensus 324 ~L-~d~d~~IR~kaLelL~~Lv~--~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~L 400 (867)
.+ ..+|.++|+.++..+..++. +.+.+..++.|.+-+.. .+..+..+++..|..+..++|+...+.+..|
T Consensus 347 ~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-------~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L 419 (526)
T PF01602_consen 347 YLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-------SGDYVSNEIINVIRDLLSNNPELREKILKKL 419 (526)
T ss_dssp HHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-------TGGGCHCHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-------ccccccchHHHHHHHHhhcChhhhHHHHHHH
Confidence 66 34477888888888887764 56677777777754442 2346788888888888888888888888888
Q ss_pred HHHHcCCC-cccHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHhcccchHhHHHHHhhHhhcc
Q 002911 401 MDFLGDSN-VASAIDVIIFVREIIEMNPK--LRVSIITRLLDNFYQIRAARVCTCALWIIGEY 460 (867)
Q Consensus 401 l~lL~~~~-~~v~~evi~~l~~ii~~~p~--lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY 460 (867)
.+.+.+.. +.+...++..+.+..+..++ ....++..+.+.+.. ..+.++..++-.+...
T Consensus 420 ~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~-~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 420 IELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE-ESPEVKLQILTALAKL 481 (526)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHH
Confidence 88888743 44556667777777776665 455566666666543 2334444444444443
No 15
>PRK09687 putative lyase; Provisional
Probab=99.48 E-value=4.8e-12 Score=137.64 Aligned_cols=252 Identities=15% Similarity=0.092 Sum_probs=176.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
..+.|.+-|.|+|..+|..|+..|+.++.+++++. +.+++.|.++.||+.|+.+++.+-. ... ..+...+.+.
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~--~~~-~~~~a~~~L~ 96 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGM--AKR-CQDNVFNILN 96 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCC--Ccc-chHHHHHHHH
Confidence 34777888899999999999999999999887655 4557899999999999999999754 221 1233456666
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCCh
Q 002911 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (867)
.++..|+|+.|+.+|+.+|.+++...+ .+.+ ..++.+...+.+.++
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~~------------~~~~----------------------~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKNP------------LYSP----------------------KIVEQSQITAFDKST 142 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhccccccc------------ccch----------------------HHHHHHHHHhhCCCH
Confidence 665699999999999999998765421 0111 122335555667777
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHH
Q 002911 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~ka 336 (867)
.|++.++.+|..+.. +. +...++.++ +++|+.||+-+...|..+....|.+... ++..|.|++..||..|
T Consensus 143 ~VR~~a~~aLg~~~~-~~----ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~~~~~~~----L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 143 NVRFAVAFALSVIND-EA----AIPLLINLL-KDPNGDVRNWAAFALNSNKYDNPDIREA----FVAMLQDKNEEIRIEA 212 (280)
T ss_pred HHHHHHHHHHhccCC-HH----HHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCCHHHHHH----HHHHhcCCChHHHHHH
Confidence 888888888887764 32 445556655 5778888888888888874445655444 4566788888888888
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHc-CCCcccHHHH
Q 002911 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLG-DSNVASAIDV 415 (867)
Q Consensus 337 LelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~-~~~~~v~~ev 415 (867)
+.-|..+.+++-+..+++ .+. ++.++..++.++|.++.. ..++.|..++. +....+...+
T Consensus 213 ~~aLg~~~~~~av~~Li~----~L~---------~~~~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIK----ELK---------KGTVGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred HHHHHccCChhHHHHHHH----HHc---------CCchHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChhHHHHH
Confidence 888888877655554444 332 123777888888887753 56677777665 4444444444
Q ss_pred HHH
Q 002911 416 IIF 418 (867)
Q Consensus 416 i~~ 418 (867)
+..
T Consensus 274 ~~a 276 (280)
T PRK09687 274 IDK 276 (280)
T ss_pred HHH
Confidence 433
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=99.40 E-value=3.1e-09 Score=128.78 Aligned_cols=341 Identities=15% Similarity=0.209 Sum_probs=207.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHh--CCCCCCchhHHHHHhh---cCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH
Q 002911 21 EIKEALEGNDVPAKVDAMKKAIMLLL--NGETLPQLFITIVRYV---LPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (867)
Q Consensus 21 eIr~~L~s~~~~~K~~alkklI~l~~--~G~d~s~l~~~VIk~v---~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi 95 (867)
++-+.+.+++. -+||++|+.+ .|+.-+.+..-+|+.+ +.++|+.+|-++.-.+..+ .. ++++
T Consensus 72 dVvk~~~S~d~-----elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~------~~i~ 138 (746)
T PTZ00429 72 DVVKLAPSTDL-----ELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RV------SSVL 138 (746)
T ss_pred HHHHHhCCCCH-----HHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--Cc------HHHH
Confidence 33445555543 4567777555 6776677544444433 3567888887776555544 21 3453
Q ss_pred -HHHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHH--HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc
Q 002911 96 -LICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIE--PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (867)
Q Consensus 96 -Lv~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e--~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d 170 (867)
.+...+++-|.|++||||-.|.-++.++- .|++++ .+.+.+.++|.|++|-|..+|+.++..|.. .+|+-+.-
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~--~~~~~l~l 216 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND--YGSEKIES 216 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH--hCchhhHH
Confidence 57799999999999999999999999983 677764 468899999999999999999999999987 66643321
Q ss_pred hHHHHHHHH--ccCCChhHHHHHHHHHHhcchhh---HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhc-CchhHHHHH
Q 002911 171 APEMIEKVL--STEQDPSAKRNAFLMLFTCDQDR---AINYLLTHVDRVSEWGELLQMVVLELIRKVCRT-NKGEKGKYI 244 (867)
Q Consensus 171 ~~~ll~~lL--~~D~D~~v~~~A~~~L~ei~~~~---al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~-~p~~~~~li 244 (867)
....+.+++ +.+.++-.....+.+|....|.. +...+..+...+...++-.....++++..+... +|.......
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~ 296 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT 296 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 223333322 14556666666677776654432 333444444445556676667777777666543 344444433
Q ss_pred ----HHHHHHHcCCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHH-HccCCCHH-HHHHHHHHHHHHHhhChhhHHHH
Q 002911 245 ----KIIISLLNAPSTAVIYECAGTLVSLS-SAPTAIRAAANTYSQL-LLSQSDNN-VKLIVLDRLNELRSSHRDIMVDL 317 (867)
Q Consensus 245 ----~~L~~lL~s~s~aV~~eaa~tL~~Ls-~~p~~lk~aa~~li~l-l~~~sD~N-vk~ivL~~L~~L~~~~p~~l~~~ 317 (867)
..+..+ .++++.+.|-+.+.+..+. ..|..+.. .++. +...+|++ ||...|+.|..|.. +.-+...
T Consensus 297 ~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~----~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan--e~Nv~~I 369 (746)
T PTZ00429 297 VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRT----NLDSFYVRYSDPPFVKLEKLRLLLKLVT--PSVAPEI 369 (746)
T ss_pred HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHH----HHHhhhcccCCcHHHHHHHHHHHHHHcC--cccHHHH
Confidence 444444 4556667777776654442 33544332 2222 23334433 77788887777764 2222333
Q ss_pred HHhheecccCCCHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc
Q 002911 318 IMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE 391 (867)
Q Consensus 318 ~~~il~~L~d~d~~IR~kaLelL~~Lv~--~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~ 391 (867)
+.++.....+.|..++++++..+..++- +.-.+.+|+.|.+-+. . +.+|..+++..+..+..+||.
T Consensus 370 L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~-~-------~~~~v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 370 LKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVD-R-------RPELLPQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhc-C-------CchhHHHHHHHHHHHHHHCcc
Confidence 3334445567778888888888777664 3445566666653332 1 123555566666666666665
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.4e-10 Score=145.23 Aligned_cols=272 Identities=16% Similarity=0.152 Sum_probs=199.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh-hHHHHHHHH
Q 002911 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD-RAINYLLTH 210 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~-~al~~L~~~ 210 (867)
.++.+.+.|.|++|.||+.|+.+|.++.. +.+.+.|..+| .|+|+.|+..|+.+|.++... .....|...
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~ 692 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPPAPALRDH 692 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCchHHHHHH
Confidence 35667788899999999999999998754 23444555666 899999999999999887422 123344444
Q ss_pred hhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccC
Q 002911 211 VDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQ 290 (867)
Q Consensus 211 l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~ 290 (867)
++ ..+|..+..+++.|......++ ..+...|.+.++.|+.+|+.+|..+...+ .++. ++.+
T Consensus 693 L~---~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~Av~aL~~~~~~~--------~l~~-~l~D 753 (897)
T PRK13800 693 LG---SPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEAVRALVSVDDVE--------SVAG-AATD 753 (897)
T ss_pred hc---CCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHHHHHHhcccCcH--------HHHH-HhcC
Confidence 43 4688899999999887654332 24566889999999999999999886432 1233 3578
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcH-HHHHHHHHHHHHHhhcCCcc
Q 002911 291 SDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNI-NEVVLMLKKEVVKTQSGELE 369 (867)
Q Consensus 291 sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv-~~IV~~L~kel~~~~~~~~d 369 (867)
+++.||..+...|..+....+..+.. +..++.|+|+.||..++..|..+.++..+ ..++..| . |
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~----L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL----~-------d 818 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDA----VRALTGDPDPLVRAAALAALAELGCPPDDVAAATAAL----R-------A 818 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHH----HHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHh----c-------C
Confidence 89999999999999987655433332 44678899999999999999999887544 3333322 1 4
Q ss_pred CCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhH
Q 002911 370 KNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARV 449 (867)
Q Consensus 370 ~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v 449 (867)
.+..+|..++++++.+.. ...++.|+.+|.|.+..++.+++..|..+ . ....+...|...+.+ .++.|
T Consensus 819 ~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~--~---~~~~a~~~L~~al~D-~d~~V 886 (897)
T PRK13800 819 SAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW--P---GDPAARDALTTALTD-SDADV 886 (897)
T ss_pred CChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc--C---CCHHHHHHHHHHHhC-CCHHH
Confidence 578899999999987652 35678999999999999999999998875 1 123456667777765 46778
Q ss_pred HHHHhhHhh
Q 002911 450 CTCALWIIG 458 (867)
Q Consensus 450 ~~~alWiLG 458 (867)
++.+.+.|+
T Consensus 887 r~~A~~aL~ 895 (897)
T PRK13800 887 RAYARRALA 895 (897)
T ss_pred HHHHHHHHh
Confidence 888887775
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.2e-10 Score=145.74 Aligned_cols=274 Identities=15% Similarity=0.153 Sum_probs=208.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
..+.|..-|.|+++.||-.|+..|+.+..++. ++.+.+.|.|+++.||+.|+.++.++-. ..+ .. +.+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~----~~~L~~aL~D~d~~VR~~Aa~aL~~l~~--~~~----~~-~~L~ 690 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGF----GPALVAALGDGAAAVRRAAAEGLRELVE--VLP----PA-PALR 690 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhH----HHHHHHHHcCCCHHHHHHHHHHHHHHHh--ccC----ch-HHHH
Confidence 45788889999999999999999999998775 4556678899999999999999998855 222 11 3344
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCCh
Q 002911 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (867)
..| .++|+.|+.+|+.+|..+....+ ..|.. .+.+.+++.+..+++.|.++.. + +.|..++...++
T Consensus 691 ~~L-~~~d~~VR~~A~~aL~~~~~~~~-~~l~~---~L~D~d~~VR~~Av~aL~~~~~--~-------~~l~~~l~D~~~ 756 (897)
T PRK13800 691 DHL-GSPDPVVRAAALDVLRALRAGDA-ALFAA---ALGDPDHRVRIEAVRALVSVDD--V-------ESVAGAATDENR 756 (897)
T ss_pred HHh-cCCCHHHHHHHHHHHHhhccCCH-HHHHH---HhcCCCHHHHHHHHHHHhcccC--c-------HHHHHHhcCCCH
Confidence 555 78999999999999998765433 23333 3457889999999999987632 1 346678999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHH
Q 002911 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~ka 336 (867)
.|+.+++.+|..+..... .....+.. +++++|+.||..++..|..+... +.+.. .++..|.|+|+.||..|
T Consensus 757 ~VR~~aa~aL~~~~~~~~---~~~~~L~~-ll~D~d~~VR~aA~~aLg~~g~~-~~~~~----~l~~aL~d~d~~VR~~A 827 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGA---PAGDAVRA-LTGDPDPLVRAAALAALAELGCP-PDDVA----AATAALRASAWQVRQGA 827 (897)
T ss_pred HHHHHHHHHHHHhccccc---hhHHHHHH-HhcCCCHHHHHHHHHHHHhcCCc-chhHH----HHHHHhcCCChHHHHHH
Confidence 999999999999975421 11233444 45788999999999999988532 22222 25567899999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHH
Q 002911 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVI 416 (867)
Q Consensus 337 LelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi 416 (867)
++.|..+.+++-+..++..|. |++..+|+.++.+|+.+. ......+.|...+.+....++.+++
T Consensus 828 a~aL~~l~~~~a~~~L~~~L~-----------D~~~~VR~~A~~aL~~~~-----~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 828 ARALAGAAADVAVPALVEALT-----------DPHLDVRKAAVLALTRWP-----GDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred HHHHHhccccchHHHHHHHhc-----------CCCHHHHHHHHHHHhccC-----CCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999988776665554432 568899999999999861 2346778888999999888888887
Q ss_pred HHHH
Q 002911 417 IFVR 420 (867)
Q Consensus 417 ~~l~ 420 (867)
..|.
T Consensus 892 ~aL~ 895 (897)
T PRK13800 892 RALA 895 (897)
T ss_pred HHHh
Confidence 7665
No 19
>PRK09687 putative lyase; Provisional
Probab=99.26 E-value=1.1e-09 Score=119.24 Aligned_cols=246 Identities=12% Similarity=0.092 Sum_probs=180.6
Q ss_pred hcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhh-HHHHHHHHHHh-
Q 002911 62 VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEI-IEPLIPSVLQN- 139 (867)
Q Consensus 62 v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el-~e~L~~~V~~~- 139 (867)
.+.++|..+|.-+-..+..+ .+ ++ +...+.+-++|+|+.+|-.|.+.|+.++.+.- .+...+.+...
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~---~~-----~~---~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLR---GG-----QD---VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhc---Cc-----ch---HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 44677887777766555544 21 22 22445556789999999999999999987542 23455666666
Q ss_pred cCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccch
Q 002911 140 LQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGE 219 (867)
Q Consensus 140 L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p 219 (867)
++|+++.||+.|+.+++.+.. ..+...+.+.+.+...+ .|.|+.|+..|+.+|..+....+++.|...++ +.++
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~--~~~~~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~ 173 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCK--KNPLYSPKIVEQSQITA-FDKSTNVRFAVAFALSVINDEAAIPLLINLLK---DPNG 173 (280)
T ss_pred hcCCCHHHHHHHHHHHhcccc--cccccchHHHHHHHHHh-hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc---CCCH
Confidence 789999999999999999865 33323344455554544 78899999999999999988888999988876 4677
Q ss_pred HHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHH
Q 002911 220 LLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIV 299 (867)
Q Consensus 220 ~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~iv 299 (867)
++....+..|+.....+| ..++.|...|...+..|+.+|+..|..+.. + .+...++..+ .+ +.+++-+
T Consensus 174 ~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~----~av~~Li~~L-~~--~~~~~~a 241 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALRKD-K----RVLSVLIKEL-KK--GTVGDLI 241 (280)
T ss_pred HHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHccCC-h----hHHHHHHHHH-cC--CchHHHH
Confidence 888899999988743333 566778888899999999999999999865 3 3566677766 33 3478888
Q ss_pred HHHHHHHHhhChhhHHHHHHhheeccc-CCCHHHHHHHHHHHhc
Q 002911 300 LDRLNELRSSHRDIMVDLIMDVLRALN-SPNLDIRRKTLDIVLE 342 (867)
Q Consensus 300 L~~L~~L~~~~p~~l~~~~~~il~~L~-d~d~~IR~kaLelL~~ 342 (867)
...|.++.. |..+. .+.+.+. ++|..|++++++.+-.
T Consensus 242 ~~ALg~ig~--~~a~p----~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 242 IEAAGELGD--KTLLP----VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHhcCC--HhHHH----HHHHHHhhCCChhHHHHHHHHHhc
Confidence 888888864 44332 3445564 7899999999987753
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.21 E-value=4.6e-07 Score=117.93 Aligned_cols=429 Identities=15% Similarity=0.127 Sum_probs=270.2
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCC-C-C-------CchhHHHHHhhcCCCC---cchHHHHHHHHHHHhhcC
Q 002911 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGE-T-L-------PQLFITIVRYVLPSED---HTIQKLLLLYLEIIDKTD 85 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~-d-~-------s~l~~~VIk~v~~S~d---~~lKkL~Ylyl~~~~~~d 85 (867)
.+.-|-..|++++.+.|..+.+-|-++...+. | . +...+..++ ++.+.+ ..+++..-..+..+...+
T Consensus 100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~-lL~~gsk~d~~L~~~Av~AL~nLs~~~ 178 (2102)
T PLN03200 100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWD-QLQPGNKQDKVVEGLLTGALRNLCGST 178 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHH-HHhCCchhhHHHHHHHHHHHHHHhcCc
Confidence 34457788999999999999987777776652 2 1 334555666 334433 334555555555554333
Q ss_pred CCCCCCchHHH---HHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHH-----HHHHHHHHhcCC-CChHHHHHHHHH
Q 002911 86 AKGRVLPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIE-----PLIPSVLQNLQH-RHPYIRRNAILA 154 (867)
Q Consensus 86 ~dg~l~~EmiL---v~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e-----~L~~~V~~~L~d-~~pyVRK~A~la 154 (867)
+ +. -..++ ++-.+.+=|+++|+..+-.|...|.++. .++..+ -.+|.+.++|.+ .++-||.+|+.|
T Consensus 179 e-n~--~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~A 255 (2102)
T PLN03200 179 D-GF--WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGA 255 (2102)
T ss_pred c-ch--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHH
Confidence 2 21 11211 4456777778899999988888776653 233332 257889999965 677999999999
Q ss_pred HHHhhccCCCcccccc------hHHHHHHHHcc--------CCChhHHHHHHHHHHhcchhh--HHH-------------
Q 002911 155 VMAIYKLPQGEQLLVD------APEMIEKVLST--------EQDPSAKRNAFLMLFTCDQDR--AIN------------- 205 (867)
Q Consensus 155 l~kI~~l~~~p~li~d------~~~ll~~lL~~--------D~D~~v~~~A~~~L~ei~~~~--al~------------- 205 (867)
+..|.. .+++.... .+.++ +++.. +.+...+++|..+|.+++.+. .+.
T Consensus 256 L~nLAs--~s~e~r~~Iv~aGgIp~LI-~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 256 LEALSS--QSKEAKQAIADAGGIPALI-NATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHHHhc--CCHHHHHHHHHCCCHHHHH-HHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHH
Confidence 999988 65544321 23344 33421 133556899999999977542 123
Q ss_pred ----------HHHHHhhh--------------------cCccchH-HHHHHHHHHHHhhhcCchhH-----HHHHHHHHH
Q 002911 206 ----------YLLTHVDR--------------------VSEWGEL-LQMVVLELIRKVCRTNKGEK-----GKYIKIIIS 249 (867)
Q Consensus 206 ----------~L~~~l~~--------------------i~~~~p~-lQ~~iL~ll~~~~~~~p~~~-----~~li~~L~~ 249 (867)
|+...++. +...+|- .|..+++.|+.+. .||..+ ..-++.|..
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~-gN~~l~~~L~~~daik~LV~ 411 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY-GNAYLSRKLNHAEAKKVLVG 411 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhccchhhhhh
Confidence 33222211 0000011 1222233332211 112111 122356777
Q ss_pred HHcCCChHHHHHHHHHHHhcCCC-hHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh---hHH--HHH
Q 002911 250 LLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD---IMV--DLI 318 (867)
Q Consensus 250 lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~---~l~--~~~ 318 (867)
+|...+..++-.++.+|..+... ++..+. .+..++++| ++++.+++..++..|..|...+++ .+- .-+
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 88888889999999999998754 333332 456788877 456789999999999888764432 221 235
Q ss_pred HhheecccCCCHHHHHHHHHHHhccCC-CCcHHHHHH------HHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc
Q 002911 319 MDVLRALNSPNLDIRRKTLDIVLELIT-PRNINEVVL------MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE 391 (867)
Q Consensus 319 ~~il~~L~d~d~~IR~kaLelL~~Lv~-~~Nv~~IV~------~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~ 391 (867)
..++++|.+++..+|+.|.-.+.+++. +.|+..++. .|.+- .+ ..+.+.+..++.+|+.+...-
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L-L~------sgd~~~q~~Aa~AL~nLi~~~-- 561 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL-LK------NGGPKGQEIAAKTLTKLVRTA-- 561 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH-Hh------CCCHHHHHHHHHHHHHHHhcc--
Confidence 557788899999999999999999984 556666553 23322 22 236789999999999987532
Q ss_pred cHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcc---c-----HHHHHHHHHHHhcccchHhHHHHHhhHhhccCCC
Q 002911 392 VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK---L-----RVSIITRLLDNFYQIRAARVCTCALWIIGEYCQS 463 (867)
Q Consensus 392 ~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~---l-----r~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~ 463 (867)
....+..++.+|...++.....++..+..++..-.. . ....+..|.+.+++ ..+.+++.++|+|+.|+..
T Consensus 562 -d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 562 -DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS-SKEETQEKAASVLADIFSS 639 (2102)
T ss_pred -chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC
Confidence 124567788888777766666667776666542111 1 12478889998886 4578999999999999875
Q ss_pred CCc
Q 002911 464 LSE 466 (867)
Q Consensus 464 ~~~ 466 (867)
-++
T Consensus 640 ~~d 642 (2102)
T PLN03200 640 RQD 642 (2102)
T ss_pred ChH
Confidence 544
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.89 E-value=2.6e-06 Score=111.14 Aligned_cols=383 Identities=15% Similarity=0.144 Sum_probs=266.9
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCC------CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHH---HH
Q 002911 28 GNDVPAKVDAMKKAIMLLLNGETL------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL---IC 98 (867)
Q Consensus 28 s~~~~~K~~alkklI~l~~~G~d~------s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiL---v~ 98 (867)
..+.+.+.++.+.+-++...+.+. ..+....++++ .+.+...++.+...+..+.+.+++.. ..+. ++
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L~nLa~~ndenr---~aIieaGaI 490 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALLAILTDEVDESK---WAITAAGGI 490 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHH---HHHHHCCCH
Confidence 345677888887776655554432 33677788854 77788889888777766654332211 1222 34
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCc--h---hhHH--HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE--T---EIIE--PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA 171 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~--~---el~e--~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~ 171 (867)
..|.+=|.++++.+|..|..+|+++.. + .++. -.+|.+.+.|.+.++-+|+.|+.|+.++... .+++.+
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~~I--- 566 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAATI--- 566 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchhHH---
Confidence 567778889999999999999999863 2 2332 3578899999999999999999999999772 222323
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcch--------------hhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCc
Q 002911 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQ--------------DRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK 237 (867)
Q Consensus 172 ~~ll~~lL~~D~D~~v~~~A~~~L~ei~~--------------~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p 237 (867)
+.++ .+| ...|+.++..++..|..+.. ..+++.|..+++ ..++-.|......|..++..++
T Consensus 567 ~~Lv-~LL-lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~---sgs~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 567 SQLT-ALL-LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS---SSKEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred HHHH-HHh-cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCh
Confidence 3444 344 45667888888877755421 125667777765 3456778899999999998777
Q ss_pred hhHH-----HHHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hH----HHHH-HHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002911 238 GEKG-----KYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PT----AIRA-AANTYSQLLLSQSDNNVKLIVLDRLNE 305 (867)
Q Consensus 238 ~~~~-----~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~----~lk~-aa~~li~ll~~~sD~Nvk~ivL~~L~~ 305 (867)
.... ..+.++..+|++.+..+..+||.+|.++... +. .++. ++.++++++ +.+|..++-.++..|..
T Consensus 642 d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 642 DLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALAN 720 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHH
Confidence 6533 3468889999999999999999999998632 22 1222 567888887 67889999999999999
Q ss_pred HHhhChh---hH-HHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHH----------HHHHHHHHhhcCCccCC
Q 002911 306 LRSSHRD---IM-VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVL----------MLKKEVVKTQSGELEKN 371 (867)
Q Consensus 306 L~~~~p~---~l-~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~----------~L~kel~~~~~~~~d~d 371 (867)
+...... +. ...+.-++++|.+.+...|+.|...|..|+...-+++++. .|.+.|.. . |.+
T Consensus 721 Ll~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~-~----~~~ 795 (2102)
T PLN03200 721 LLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS-T----DLD 795 (2102)
T ss_pred HHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc-C----Ccc
Confidence 9863221 11 2335557788899999999999999999999988887542 23322221 1 112
Q ss_pred HHHHHHHHHHHHHhHcc-------CCccH-----HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc
Q 002911 372 GEYRQMLIQAIHSCAIK-------FPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL 429 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~k-------f~~~a-----~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l 429 (867)
.---.++...+..++.. +|+++ ..-++.|+++|..+++.+...++..+..+.+-+|.+
T Consensus 796 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~ 865 (2102)
T PLN03200 796 SSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVV 865 (2102)
T ss_pred hhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhH
Confidence 22233467777776652 33332 134678889999898988899999999888877764
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=5.8e-06 Score=94.06 Aligned_cols=355 Identities=17% Similarity=0.259 Sum_probs=232.0
Q ss_pred HHHHHHHhc-CCCCH-----HHHHHHHHHhhc-CCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc-
Q 002911 97 ICQNLRNNL-QHPNE-----YIRGVTLRFLCR-LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL- 168 (867)
Q Consensus 97 v~NsL~KDL-~~pNe-----~IRglALr~Ls~-I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li- 168 (867)
++..+-+|+ .+|+. -..|+|.-.+|- .......+.++|+|..|+.|++.-||-.|+.++|.|.+..++ +.+
T Consensus 43 ~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-~v~~ 121 (675)
T KOG0212|consen 43 VISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG-EVLV 121 (675)
T ss_pred HHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc-Cccc
Confidence 444455555 23333 234555554432 233336788999999999999999999999999999884122 222
Q ss_pred --cchHHHHHHHHccCCChhHHHHHHH---HHHhcchhhH----HHHHHHHhh-hcCccchHHHHHHHHHHHHhhhcCch
Q 002911 169 --VDAPEMIEKVLSTEQDPSAKRNAFL---MLFTCDQDRA----INYLLTHVD-RVSEWGELLQMVVLELIRKVCRTNKG 238 (867)
Q Consensus 169 --~d~~~ll~~lL~~D~D~~v~~~A~~---~L~ei~~~~a----l~~L~~~l~-~i~~~~p~lQ~~iL~ll~~~~~~~p~ 238 (867)
+++.+.+-+ |..|+|..|+..|=. .+.+|..+++ ++-+..+++ .+...+|.....+++-+.-+...-+-
T Consensus 122 ~Fn~iFdvL~k-lsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~ 200 (675)
T KOG0212|consen 122 YFNEIFDVLCK-LSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL 200 (675)
T ss_pred chHHHHHHHHH-HhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH
Confidence 234455655 358999998876532 2233333332 444444443 24556788888888888766433221
Q ss_pred ----hHHHHHHHHHHHHcCCChHHHHHHHHHHHh----cCCChHHH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 239 ----EKGKYIKIIISLLNAPSTAVIYECAGTLVS----LSSAPTAI--RAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 239 ----~~~~li~~L~~lL~s~s~aV~~eaa~tL~~----Ls~~p~~l--k~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
.-..+++-+.+.|..++..|+--|-.++.. +.+.|..+ ...+..++.-+ .++++.++.++|..+.++..
T Consensus 201 ~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 201 EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhc
Confidence 235677888889999999999777665544 44555432 22444444444 57899999999999999998
Q ss_pred hChhhHHH----HHHhheecccCCCH-HHHHHHHH---HHhccCCCCcHH------HHHHHHHHHHHHhhcCCccCCHHH
Q 002911 309 SHRDIMVD----LIMDVLRALNSPNL-DIRRKTLD---IVLELITPRNIN------EVVLMLKKEVVKTQSGELEKNGEY 374 (867)
Q Consensus 309 ~~p~~l~~----~~~~il~~L~d~d~-~IR~kaLe---lL~~Lv~~~Nv~------~IV~~L~kel~~~~~~~~d~d~e~ 374 (867)
..|..+-. ....++.|+++.+. .++-.|-. .+++++++.--+ .+++.|.+++.. ...+-
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-------~~~~t 352 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-------DREET 352 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-------chHHH
Confidence 77765533 34557889988776 45555443 456666654333 788888877653 35689
Q ss_pred HHHHHHHHHHhHccCCcc----HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHhcccchHh
Q 002911 375 RQMLIQAIHSCAIKFPEV----ASTVVHLLMDFLGDSNVASAIDVIIFVREIIE--MNPKLRVSIITRLLDNFYQIRAAR 448 (867)
Q Consensus 375 r~~lI~aI~~la~kf~~~----a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~--~~p~lr~~il~~L~~~L~~i~~~~ 448 (867)
|-.+.+=|+.+-.++|.. .+.+..+|+.-|+|..+.+..-++..+..+.. +.|..+ +.+..|++.+.. ++.
T Consensus 353 ri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~-~fl~sLL~~f~e--~~~ 429 (675)
T KOG0212|consen 353 RIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLR-KFLLSLLEMFKE--DTK 429 (675)
T ss_pred HHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHH-HHHHHHHHHHhh--hhH
Confidence 999999999999999865 47899999999999998888888888888875 334332 355566666543 122
Q ss_pred -HHHHHhhHhhccCCCC
Q 002911 449 -VCTCALWIIGEYCQSL 464 (867)
Q Consensus 449 -v~~~alWiLGEY~~~~ 464 (867)
.......|+-+-|-..
T Consensus 430 ~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 430 LLEVRGNLIIRQLCLLL 446 (675)
T ss_pred HHHhhhhHHHHHHHHHh
Confidence 2334444444444443
No 23
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.71 E-value=1e-06 Score=105.44 Aligned_cols=299 Identities=18% Similarity=0.195 Sum_probs=200.7
Q ss_pred hHHHHHHHHHHhcCCCCHHHHH---HHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc
Q 002911 93 EMILICQNLRNNLQHPNEYIRG---VTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (867)
Q Consensus 93 EmiLv~NsL~KDL~~pNe~IRg---lALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~ 169 (867)
+|-..++-+.|-....|..++- +=|.-.++... +..--.++.+++=+.|+||++|-.|+-++..+ ..+.+++
T Consensus 52 dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~ 126 (757)
T COG5096 52 DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLG 126 (757)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHH
Confidence 3766777777777766654442 33555566554 55555689999999999999999999988876 4577888
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcc---hhhHHHH-HHHHhhh-cCccchHHHHHHHHHHHHhhhc---------
Q 002911 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCD---QDRAINY-LLTHVDR-VSEWGELLQMVVLELIRKVCRT--------- 235 (867)
Q Consensus 170 d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~---~~~al~~-L~~~l~~-i~~~~p~lQ~~iL~ll~~~~~~--------- 235 (867)
.+.+.|.+++ .|.++-|+++|+.++..+- ++....- +..++.. +.+.+|..-..++-.+....+.
T Consensus 127 ~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~ 205 (757)
T COG5096 127 NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEV 205 (757)
T ss_pred HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 8888888876 8999999999999888753 3332111 1111211 2234454443333333333222
Q ss_pred -------Cc--------hhHHHHHHHHHHHH-cCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHH
Q 002911 236 -------NK--------GEKGKYIKIIISLL-NAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIV 299 (867)
Q Consensus 236 -------~p--------~~~~~li~~L~~lL-~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~iv 299 (867)
++ -.+...++.+.... ...++++.++..........++..+..++..++.++...+++|...+.
T Consensus 206 ~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~ 285 (757)
T COG5096 206 ILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLIS 285 (757)
T ss_pred HHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhh
Confidence 10 01112222222222 224567777777777777777788888899999998888999999999
Q ss_pred HHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHH
Q 002911 300 LDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLI 379 (867)
Q Consensus 300 L~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI 379 (867)
...+..+..+.+.. ..++++....-+.+.+-+.++...++...++..+++..|.+..+.+.. ......-+.+.
T Consensus 286 ~~~l~~Ll~~~~~~----~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l---~~~~n~~~~L~ 358 (757)
T COG5096 286 SPPLVTLLAKPESL----IQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRL---ADDQNLSQILL 358 (757)
T ss_pred ccHHHHHHcCCHHH----HHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhc---CCchhhHHHHH
Confidence 99999988765333 344555666678899999999999999999999999999988877543 23345566888
Q ss_pred HHHHHhHccCCccHHHHHHHHHHHHcC
Q 002911 380 QAIHSCAIKFPEVASTVVHLLMDFLGD 406 (867)
Q Consensus 380 ~aI~~la~kf~~~a~~~v~~Ll~lL~~ 406 (867)
+++..+++.+ .....++..++.|++
T Consensus 359 e~~~y~~~~~--~~~e~v~~~ik~lgd 383 (757)
T COG5096 359 ELIYYIAENH--IDAEMVSEAIKALGD 383 (757)
T ss_pred HHHHHHhhcc--ccHHHHHHHHHHHHh
Confidence 8888887652 223444444444443
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.67 E-value=4.7e-05 Score=89.97 Aligned_cols=258 Identities=18% Similarity=0.298 Sum_probs=171.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCc-hhh-H-----HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc--
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNE-TEI-I-----EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL-- 167 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~-~el-~-----e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l-- 167 (867)
....+++-|+||++.||.+|++.++++.. ++. + ..+++.|..|+.|++..|.+.|+-++.++.+ ..+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~~~~ 155 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEGLEQ 155 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC--CchhHHH
Confidence 44788899999999999999999999732 221 1 4478999999999999999999999999988 44432
Q ss_pred c-c-chHHHHHHHHccCCChhHHHHHHHHHHhcchhh--HHH------HHHHHhhhcCccchHHHHHHHHHHHHhhhcCc
Q 002911 168 L-V-DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--AIN------YLLTHVDRVSEWGELLQMVVLELIRKVCRTNK 237 (867)
Q Consensus 168 i-~-d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~--al~------~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p 237 (867)
+ + +....+..++ ...|..++..++.++.++.... +.. .+..+++.+..-|..+|+.+++++..++....
T Consensus 156 l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 156 LFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 1 1 1245566655 4447788888888888875321 222 44555666777888999999999999988332
Q ss_pred h----hHHHHHHHHHHHHcCC--Ch---H-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHH---HccCCCHHHHHHHHHHH
Q 002911 238 G----EKGKYIKIIISLLNAP--ST---A-VIYECAGTLVSLSS-APTAIRAAANTYSQL---LLSQSDNNVKLIVLDRL 303 (867)
Q Consensus 238 ~----~~~~li~~L~~lL~s~--s~---a-V~~eaa~tL~~Ls~-~p~~lk~aa~~li~l---l~~~sD~Nvk~ivL~~L 303 (867)
. .+..+++.|.+++... +| + .+...++.+.++.. .|..+...-..+++. +..+.|++.+-++++.+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 2 1234566677776653 22 2 33334455555543 343333322333322 24678999999999999
Q ss_pred HHHHhh----------ChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC---CCcHHHHHHHHH
Q 002911 304 NELRSS----------HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT---PRNINEVVLMLK 357 (867)
Q Consensus 304 ~~L~~~----------~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~---~~Nv~~IV~~L~ 357 (867)
..|... ++..+......+.....+...++|.++|+.+..+.+ ++.-+++.....
T Consensus 315 g~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 315 GQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred HHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 988752 233334445556666777888999999998887732 234445544333
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.66 E-value=3.7e-05 Score=90.87 Aligned_cols=257 Identities=16% Similarity=0.219 Sum_probs=167.5
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002911 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 126 ~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li-----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
.++.+...+.+..+|.|++|.||+-|+.++.++.+ ...... ++....+-.+| .+.|..|...|..+|..+..
T Consensus 72 ~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~--~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 72 DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR--HSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--CCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhC
Confidence 34477888999999999999999999999999877 443322 22334454555 89999999999999999875
Q ss_pred hhH-HHHH-----HHHhhhc-CccchHHHHHHHHHHHHhhhcCchhHHH-----HHHHHHHHHcCCChHHHHHHHHHHHh
Q 002911 201 DRA-INYL-----LTHVDRV-SEWGELLQMVVLELIRKVCRTNKGEKGK-----YIKIIISLLNAPSTAVIYECAGTLVS 268 (867)
Q Consensus 201 ~~a-l~~L-----~~~l~~i-~~~~p~lQ~~iL~ll~~~~~~~p~~~~~-----li~~L~~lL~s~s~aV~~eaa~tL~~ 268 (867)
... .+.+ ...+.++ ...++..+..+++++..++..++..... +++.+...|.+.+.-|...|..++..
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~ 228 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSE 228 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 432 2222 3333332 3347888999999999999887764432 66777777888777899999999999
Q ss_pred cCCChHHHHH-----HHHHHHHHHccC-CCH---HHHHHHH-HHHHHHHhhChhhH-H---HHHHhheecccCCCHHHHH
Q 002911 269 LSSAPTAIRA-----AANTYSQLLLSQ-SDN---NVKLIVL-DRLNELRSSHRDIM-V---DLIMDVLRALNSPNLDIRR 334 (867)
Q Consensus 269 Ls~~p~~lk~-----aa~~li~ll~~~-sD~---Nvk~ivL-~~L~~L~~~~p~~l-~---~~~~~il~~L~d~d~~IR~ 334 (867)
+...+...+. +...++.++... .|+ .+-..+. .-...+...+|.-+ . .....+++++.+.|..++-
T Consensus 229 La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~ 308 (503)
T PF10508_consen 229 LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIRE 308 (503)
T ss_pred HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence 9766554332 345566665433 344 1121111 22333443333322 2 2223345667889999999
Q ss_pred HHHHHHhccCCCCcHHHHH-H-------HHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc
Q 002911 335 KTLDIVLELITPRNINEVV-L-------MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (867)
Q Consensus 335 kaLelL~~Lv~~~Nv~~IV-~-------~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k 388 (867)
-|++.+..+++..--..++ . ..++.+-.... ....++|...+.+++.+-..
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~---~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIK---SGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHhc
Confidence 9999999998765444444 1 11112222221 23467999999999887543
No 26
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.0001 Score=86.89 Aligned_cols=326 Identities=13% Similarity=0.179 Sum_probs=216.9
Q ss_pred CCCCHHHHHHHHHH-hhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCC
Q 002911 106 QHPNEYIRGVTLRF-LCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD 184 (867)
Q Consensus 106 ~~pNe~IRglALr~-Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D 184 (867)
.+.+.--..-|++. ++-|..-+=+..+.|+|+++...+++-|||-...=+.+... ..|++.==.....++.| .|+|
T Consensus 45 dSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE--eqpdLALLSIntfQk~L-~DpN 121 (968)
T KOG1060|consen 45 DSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAE--EQPDLALLSINTFQKAL-KDPN 121 (968)
T ss_pred hccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh--cCCCceeeeHHHHHhhh-cCCc
Confidence 34444444444433 34444334478899999999999999999999988888888 77776433456777877 8999
Q ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHhhh-cCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHH
Q 002911 185 PSAKRNAFLMLFTCDQDRAINYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECA 263 (867)
Q Consensus 185 ~~v~~~A~~~L~ei~~~~al~~L~~~l~~-i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa 263 (867)
+-++..|+.+|..|.-.--.+..+..+++ +.+++|...-.+-..|.|+...+|+++..+++++..+|...++-|+=.|+
T Consensus 122 ~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv 201 (968)
T KOG1060|consen 122 QLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAV 201 (968)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHH
Confidence 99999999999988754323333333333 56788998888888888999999999999999999999999999998888
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh-----------------------------Chhh
Q 002911 264 GTLVSLSSAP-TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-----------------------------HRDI 313 (867)
Q Consensus 264 ~tL~~Ls~~p-~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~-----------------------------~p~~ 313 (867)
-++-.+-++. +.+..--.+++++|..-.++. +.+.+..|.+-++. .|.+
T Consensus 202 ~AF~evCPerldLIHknyrklC~ll~dvdeWg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~ 280 (968)
T KOG1060|consen 202 MAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYV 280 (968)
T ss_pred HHHHHhchhHHHHhhHHHHHHHhhccchhhhh-HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcc
Confidence 8887765431 233344456666664322221 33444444433321 1211
Q ss_pred HHHHHHhhe----ecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccC
Q 002911 314 MVDLIMDVL----RALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF 389 (867)
Q Consensus 314 l~~~~~~il----~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf 389 (867)
..+-..-++ .+|.+.++.|-..+..+.+.|+.+.-+..|++.|.+- .+. +.+.+..+.+.|+.++.+-
T Consensus 281 ~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL-Lrs-------~~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 281 NDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL-LRS-------NREVQYVVLQNIATISIKR 352 (968)
T ss_pred cCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH-Hhc-------CCcchhhhHHHHHHHHhcc
Confidence 111122233 2467888999999999999999988888888888763 332 4578889999999999774
Q ss_pred Ccc------------------HHHHHHHHHHHHcCCC----------------cccHHHHHHHHHHHHHhCcccHHHHHH
Q 002911 390 PEV------------------ASTVVHLLMDFLGDSN----------------VASAIDVIIFVREIIEMNPKLRVSIIT 435 (867)
Q Consensus 390 ~~~------------------a~~~v~~Ll~lL~~~~----------------~~v~~evi~~l~~ii~~~p~lr~~il~ 435 (867)
|.. ..|-+++|..+...++ ..++..++..|.....+.-......+.
T Consensus 353 ~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~ 432 (968)
T KOG1060|consen 353 PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLN 432 (968)
T ss_pred hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHH
Confidence 321 2356666666555443 123333444444444444455555666
Q ss_pred HHHHHhcc
Q 002911 436 RLLDNFYQ 443 (867)
Q Consensus 436 ~L~~~L~~ 443 (867)
.|+..+.+
T Consensus 433 gLv~Llss 440 (968)
T KOG1060|consen 433 GLVQLLSS 440 (968)
T ss_pred HHHHHHhc
Confidence 66666654
No 27
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.49 E-value=6e-05 Score=84.15 Aligned_cols=212 Identities=18% Similarity=0.209 Sum_probs=146.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHH
Q 002911 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll 175 (867)
.....+.+.+.++++.+|..|...++.+...+. +|.+.+.+.+.++.||..|+.|++++.. |..+ +.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~a----v~~l~~~l~d~~~~vr~~a~~aLg~~~~----~~a~----~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEA----VPLLRELLSDEDPRVRDAAADALGELGD----PEAV----PPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHH----HHHHHHHhcCCCHHHHHHHHHHHHccCC----hhHH----HHH
Confidence 466888999999999999999999999998776 4566789999999999999999998744 3333 333
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCC
Q 002911 176 EKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPS 255 (867)
Q Consensus 176 ~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s 255 (867)
..+|..|.|..|+..|..+|..+...+++.-|...+++-.... +.... ++ ..
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~---a~~~~---------~~----------------~~ 162 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGS---AAAAL---------DA----------------AL 162 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhh---hhhhc---------cc----------------hH
Confidence 3445458999999999999999999988877777765422111 11111 00 00
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHH
Q 002911 256 TAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRK 335 (867)
Q Consensus 256 ~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~k 335 (867)
..++..++..+..+... . ....++..+ .+.+..+|..+...|..+....+.+ ...+...+.+++..+|.+
T Consensus 163 ~~~r~~a~~~l~~~~~~-~----~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~~~~----~~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 163 LDVRAAAAEALGELGDP-E----AIPLLIELL-EDEDADVRRAAASALGQLGSENVEA----ADLLVKALSDESLEVRKA 232 (335)
T ss_pred HHHHHHHHHHHHHcCCh-h----hhHHHHHHH-hCchHHHHHHHHHHHHHhhcchhhH----HHHHHHHhcCCCHHHHHH
Confidence 05677777777766532 1 222233333 4555677777777777776543122 223556678888888888
Q ss_pred HHHHHhccCCCCcHHHHHHHHH
Q 002911 336 TLDIVLELITPRNINEVVLMLK 357 (867)
Q Consensus 336 aLelL~~Lv~~~Nv~~IV~~L~ 357 (867)
++..+..+...+.+..++..+.
T Consensus 233 ~~~~l~~~~~~~~~~~l~~~l~ 254 (335)
T COG1413 233 ALLALGEIGDEEAVDALAKALE 254 (335)
T ss_pred HHHHhcccCcchhHHHHHHHHh
Confidence 8888888888877777666543
No 28
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00019 Score=85.04 Aligned_cols=276 Identities=17% Similarity=0.212 Sum_probs=157.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH-HHHH
Q 002911 21 EIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI-LICQ 99 (867)
Q Consensus 21 eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi-Lv~N 99 (867)
|.-|...+++--+|+-+---+..+.--.+|+--++...+++=+.+. -+-.+-+++..+...-+ +||+ =+-+
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~---nq~vVglAL~alg~i~s-----~Emardlap 145 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSS---NQYVVGLALCALGNICS-----PEMARDLAP 145 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCC---CeeehHHHHHHhhccCC-----HHHhHHhhH
Confidence 4456677777655554332222222223334444444444333444 44455555555533332 6884 3457
Q ss_pred HHHHhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc-------
Q 002911 100 NLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD------- 170 (867)
Q Consensus 100 sL~KDL~~pNe~IRglALr~Ls~I--~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d------- 170 (867)
-+-+=|+|++||||-=|+-++-++ +.|++.+.+++.-++.|.++|+-|=-.++.-+..+.+ .+|+.+..
T Consensus 146 eVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~--~~~~~l~~fr~l~~~ 223 (866)
T KOG1062|consen 146 EVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCK--ISPDALSYFRDLVPS 223 (866)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 778888999999999888888876 6999999999999999999999998888888888888 66655443
Q ss_pred hHHHHHHHHc----------cCCChhHHHHHHHHHHhcchhh--HHHHHHHHhhhc----C-------------------
Q 002911 171 APEMIEKVLS----------TEQDPSAKRNAFLMLFTCDQDR--AINYLLTHVDRV----S------------------- 215 (867)
Q Consensus 171 ~~~ll~~lL~----------~D~D~~v~~~A~~~L~ei~~~~--al~~L~~~l~~i----~------------------- 215 (867)
+..+++++-. .=+||......+..|.-+.+.. +-+....++.++ .
T Consensus 224 lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~ 303 (866)
T KOG1062|consen 224 LVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMD 303 (866)
T ss_pred HHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHh
Confidence 3334444321 1257777777776665544332 222222222221 1
Q ss_pred -ccchHHHHHHHHHHHHhh-------------------hcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH
Q 002911 216 -EWGELLQMVVLELIRKVC-------------------RTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA 275 (867)
Q Consensus 216 -~~~p~lQ~~iL~ll~~~~-------------------~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~ 275 (867)
..++-+.+..+.+|+|+- ..+|...++=-..+.++|+.+++++...|-..+..+.+. .-
T Consensus 304 I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~N 382 (866)
T KOG1062|consen 304 IRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SN 382 (866)
T ss_pred ccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-cc
Confidence 122223344444444432 223444444445555666666666666666666665443 23
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 276 IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 276 lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
++.+++.++..|-+. |+..|--....+..+++
T Consensus 383 v~~mv~eLl~fL~~~-d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 383 VRVMVKELLEFLESS-DEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 555666666655433 66665555555555444
No 29
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.43 E-value=6.2e-06 Score=84.03 Aligned_cols=103 Identities=16% Similarity=0.314 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHhh--cCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc-h-HHHHHHHHccCCC
Q 002911 109 NEYIRGVTLRFLC--RLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-A-PEMIEKVLSTEQD 184 (867)
Q Consensus 109 Ne~IRglALr~Ls--~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d-~-~~ll~~lL~~D~D 184 (867)
||.||..|+.+|| .++-|.++++..|.+..+|.|++|+|||.|+.++.++.. .+.--... . ..++ .+| .|.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~--~d~ik~k~~l~~~~l-~~l-~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL--EDMIKVKGQLFSRIL-KLL-VDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--cCceeehhhhhHHHH-HHH-cCCC
Confidence 6899999999999 568999999999999999999999999999999999988 44322222 2 3444 334 8999
Q ss_pred hhHHHHHHHHHHhcchhh----HHHHHHHHhhhcC
Q 002911 185 PSAKRNAFLMLFTCDQDR----AINYLLTHVDRVS 215 (867)
Q Consensus 185 ~~v~~~A~~~L~ei~~~~----al~~L~~~l~~i~ 215 (867)
+.|+..|-..|.++.... -.+.+..++..++
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 999999999999986552 2344444444443
No 30
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00041 Score=81.31 Aligned_cols=309 Identities=14% Similarity=0.235 Sum_probs=201.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I--~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
|-+..=|.|.-||+|--|+-.|-++ +-||.+.+.+|-+++.|+|++|-|--.|+-.+.-+.+ +.|.-.=.+.++..
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr--KnPknyL~LAP~ff 224 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR--KNPQNYLQLAPLFY 224 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh--hCCcccccccHHHH
Confidence 4444446789999999999999886 6899999999999999999999999999999999999 77743322334444
Q ss_pred HHHccCCChhHHHHHHHHHHhc---chhhH---HHHHHHHhhhcCccchHHHHHHHHHHHHhhhc--------CchhHHH
Q 002911 177 KVLSTEQDPSAKRNAFLMLFTC---DQDRA---INYLLTHVDRVSEWGELLQMVVLELIRKVCRT--------NKGEKGK 242 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei---~~~~a---l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~--------~p~~~~~ 242 (867)
++|...+|-=+..--+.++..+ -|... ++.|.+++.. . .....+-+.+...... +.+....
T Consensus 225 kllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~s---T--~AmSLlYECvNTVVa~s~s~g~~d~~asiqL 299 (877)
T KOG1059|consen 225 KLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMES---T--VAMSLLYECVNTVVAVSMSSGMSDHSASIQL 299 (877)
T ss_pred HHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHh---h--HHHHHHHHHHHHheeehhccCCCCcHHHHHH
Confidence 5554444443444444444444 34332 2333333321 0 1111222233222211 2223455
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh-C-hhhHHHHHH
Q 002911 243 YIKIIISLLNAPSTAVIYECAGTLVSLS-SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-H-RDIMVDLIM 319 (867)
Q Consensus 243 li~~L~~lL~s~s~aV~~eaa~tL~~Ls-~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~-~-p~~l~~~~~ 319 (867)
.++.|..++..+++...|=+..++.++. .+|.++++--.-+++.| .+.|.++|.-+|+.|..|..+ + ..+++....
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL-~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~ 378 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCL-DDKDESIRLRALDLLYGMVSKKNLMEIVKTLMK 378 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHh-ccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6677888899999999999999988875 46777765444455554 789999999999999998753 1 122222211
Q ss_pred hheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHH-----HHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH
Q 002911 320 DVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLM-----LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS 394 (867)
Q Consensus 320 ~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~-----L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~ 394 (867)
.+...++...|-.-+.-+..+|+.+|...|.++ ++-||.+- ...+--..+..-|..++.|-|..-.
T Consensus 379 ---~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l------~~~~~G~~I~eQi~Dv~iRV~~iR~ 449 (877)
T KOG1059|consen 379 ---HVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARL------EGTRHGSLIAEQIIDVAIRVPSIRP 449 (877)
T ss_pred ---HHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhc------cccchhhHHHHHHHHHheechhhhH
Confidence 234455678999999999999999999887764 11133322 1244556777778888888888877
Q ss_pred HHHHHHHHHHcCC----C-------cccHHHHHHHHHHHHH
Q 002911 395 TVVHLLMDFLGDS----N-------VASAIDVIIFVREIIE 424 (867)
Q Consensus 395 ~~v~~Ll~lL~~~----~-------~~v~~evi~~l~~ii~ 424 (867)
..|+.+..++.+. . ..+..+++..+.+..+
T Consensus 450 fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse 490 (877)
T KOG1059|consen 450 FSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSE 490 (877)
T ss_pred hHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHH
Confidence 7777777777644 1 2344455555555544
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.001 Score=82.12 Aligned_cols=126 Identities=12% Similarity=0.123 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc----cHHHHHHHHHHHH
Q 002911 330 LDIRRKTLDIVL-ELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE----VASTVVHLLMDFL 404 (867)
Q Consensus 330 ~~IR~kaLelL~-~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~----~a~~~v~~Ll~lL 404 (867)
..+-..+||.+. .|.-+ .|+..++.++..... ..+..+|..++-+|+.+++--++ ..+.+++..+.+|
T Consensus 326 ~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~---S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQ---STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred HHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Confidence 445666676554 33333 333344434444333 24789999999999998864332 3568889999999
Q ss_pred cCCCcccHHHHHHHHHHHHHh-Cccc----HHHHHHHHHHHhcccchHhHHHHHhhHhhccCC
Q 002911 405 GDSNVASAIDVIIFVREIIEM-NPKL----RVSIITRLLDNFYQIRAARVCTCALWIIGEYCQ 462 (867)
Q Consensus 405 ~~~~~~v~~evi~~l~~ii~~-~p~l----r~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~ 462 (867)
.|..+.++..+...+.++-.. .|++ +++++..|+..+++-..+++...++-.+=.|.+
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 999999999999999988654 3444 345566677777777777876666555554433
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.35 E-value=0.00081 Score=80.85 Aligned_cols=314 Identities=16% Similarity=0.185 Sum_probs=187.2
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCch-hHHHHHhhcCCCCcc-----hHHHHHHHHHH-HhhcC-CCC
Q 002911 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQL-FITIVRYVLPSEDHT-----IQKLLLLYLEI-IDKTD-AKG 88 (867)
Q Consensus 17 ~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l-~~~VIk~v~~S~d~~-----lKkL~Ylyl~~-~~~~d-~dg 88 (867)
+=+.+|-..++|+-.+--...-.-..+..+-+.+.+.+ ++..+..+ ..+-++ +-|=+|+.+-. .+-+. .-+
T Consensus 734 ~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~l-t~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~ 812 (1233)
T KOG1824|consen 734 PILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLL-TAPVYEQVTDGLHKQAYYSIAKCVAALTCACP 812 (1233)
T ss_pred hhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHH-cCCcccccccchhHHHHHHHHHHHHHHHHhcc
Confidence 34677888888885543332222233333333333333 66666533 333222 33444433222 21111 001
Q ss_pred CCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCC
Q 002911 89 RVLPEMILICQNLRNNLQHP--NEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ 163 (867)
Q Consensus 89 ~l~~EmiLv~NsL~KDL~~p--Ne~IRglALr~Ls~I~~---~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~ 163 (867)
++.--.+-.+.+|+++| |.-+|-.|+-.+|.++- ..-...+...|.++++|++.-|++.|..|++.+--= .
T Consensus 813 ---~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg-n 888 (1233)
T KOG1824|consen 813 ---QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG-N 888 (1233)
T ss_pred ---ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC-c
Confidence 12223445778899855 68899999999999862 222344566789999999999999999999998651 1
Q ss_pred CcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-------HHH-HHHHHhhhcCccchHHHHHHHHHHHHhhhc
Q 002911 164 GEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-------AIN-YLLTHVDRVSEWGELLQMVVLELIRKVCRT 235 (867)
Q Consensus 164 ~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-------al~-~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~ 235 (867)
-|..+ |.+++. . +.+|-=+.--+..|.++-... .+. .+--+++.+....++..-.+-+.+++++-.
T Consensus 889 l~~yL---pfil~q-i--~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ 962 (1233)
T KOG1824|consen 889 LPKYL---PFILEQ-I--ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLI 962 (1233)
T ss_pred hHhHH---HHHHHH-H--hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC
Confidence 12222 334433 1 344443433344444432111 111 122233445555566688999999999988
Q ss_pred CchhHHHHHHHHHHHHcCCChHHHHH---HHHHHHhcCCCh--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC
Q 002911 236 NKGEKGKYIKIIISLLNAPSTAVIYE---CAGTLVSLSSAP--TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH 310 (867)
Q Consensus 236 ~p~~~~~li~~L~~lL~s~s~aV~~e---aa~tL~~Ls~~p--~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~ 310 (867)
+|+ .++..|...+.|..+..+-- |++..+...+.| ..++.....++.++ .++|.+||-++|..++..+.+.
T Consensus 963 epe---sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~-~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 963 EPE---SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLL-RDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred ChH---HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHccC
Confidence 875 67788888888877654443 333333333322 35666666666655 7999999999999999998888
Q ss_pred hhhHHHHHHhheeccc----------------------CCCHHHHHHHHHHHhccCC
Q 002911 311 RDIMVDLIMDVLRALN----------------------SPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 311 p~~l~~~~~~il~~L~----------------------d~d~~IR~kaLelL~~Lv~ 345 (867)
|.++.+...+++..|. |+..++|+.|.+-++.|.+
T Consensus 1039 pslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1039 PSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred HhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHH
Confidence 8887777666665443 3456677777777776553
No 33
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00015 Score=83.70 Aligned_cols=344 Identities=15% Similarity=0.194 Sum_probs=213.9
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhccCCCccc----
Q 002911 94 MILICQNLRNNLQH-PNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQL---- 167 (867)
Q Consensus 94 miLv~NsL~KDL~~-pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~-d~~pyVRK~A~lal~kI~~l~~~p~l---- 167 (867)
.+-.+.++||-+.. +||-|. ..+++ -++|.++++|. +.+|-++-.|+.|+.+|.. ...+.
T Consensus 83 q~~a~~~~rkllS~~~~ppi~-~vi~~-----------G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs--gtse~T~~v 148 (514)
T KOG0166|consen 83 QLTATQAFRKLLSKERNPPID-EVIQS-----------GVVPRLVEFLSRDDNPTLQFEAAWALTNIAS--GTSEQTKVV 148 (514)
T ss_pred HHHHHHHHHHHHccCCCCCHH-HHHHc-----------CcHHHHHHHHccCCChhHHHHHHHHHHHHhc--Cchhhcccc
Confidence 46677788887754 344443 22222 24677888886 6789999999999999988 33322
Q ss_pred ccc-hHHHHHHHHccCCChhHHHHHHHHHHhcchhhH--HHH------HHHHhhhcCccch-HHHHHHHHHHHHhhhcC-
Q 002911 168 LVD-APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--INY------LLTHVDRVSEWGE-LLQMVVLELIRKVCRTN- 236 (867)
Q Consensus 168 i~d-~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a--l~~------L~~~l~~i~~~~p-~lQ~~iL~ll~~~~~~~- 236 (867)
+++ +..++-.+| ..++..|+..|+-+|..+..+.. -+| +..++..+...++ -+.-.+...|..+|+.-
T Consensus 149 v~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 149 VDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred ccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 121 345555655 88999999999999999865431 122 2223333333343 23445777888888863
Q ss_pred c----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-hHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002911 237 K----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (867)
Q Consensus 237 p----~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~-p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L 306 (867)
| .....+++.|..+|.+.++.|.-.|++++.+|+.. ++.++. .+..++.+| .++.++++--+|+.+..|
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccce
Confidence 4 34678899999999999999999999999999753 333443 345678877 677889999999999887
Q ss_pred HhhChh---hH--HHHHHhheeccc-CCCHHHHHHHHHHHhccCCCCcHHH--------HHHHHHHHHHHhhcCCccCCH
Q 002911 307 RSSHRD---IM--VDLIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINE--------VVLMLKKEVVKTQSGELEKNG 372 (867)
Q Consensus 307 ~~~~p~---~l--~~~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~~Nv~~--------IV~~L~kel~~~~~~~~d~d~ 372 (867)
..-... ++ ...+..+..+++ ++...||+.|.=++.+++. .|.+. ++..|..-+++ .+.
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~-------~ef 378 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQT-------AEF 378 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhc-------cch
Confidence 653221 11 122333444566 5666699999999998765 55433 34444433332 246
Q ss_pred HHHHHHHHHHHHhHccCCc------cHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH---HhCcccHHHHHHHHHH----
Q 002911 373 EYRQMLIQAIHSCAIKFPE------VASTVVHLLMDFLGDSNVASAIDVIIFVREII---EMNPKLRVSIITRLLD---- 439 (867)
Q Consensus 373 e~r~~lI~aI~~la~kf~~------~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii---~~~p~lr~~il~~L~~---- 439 (867)
..|+++.-+|+.++..=.+ +..-+++-+.++|......+..-+...+..++ +.....+..-+..+++
T Consensus 379 ~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~gg 458 (514)
T KOG0166|consen 379 DIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccC
Confidence 7899999999988754221 11236666777776555544444444444444 3333211112222222
Q ss_pred -----HhcccchHhHHHHHhhHhhccC
Q 002911 440 -----NFYQIRAARVCTCALWIIGEYC 461 (867)
Q Consensus 440 -----~L~~i~~~~v~~~alWiLGEY~ 461 (867)
.|..-...+++..+.-||+.|-
T Consensus 459 ldkiE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 459 LDKIENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred hhHHHHhhccccHHHHHHHHHHHHHhc
Confidence 2222233467777777777663
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.0016 Score=74.77 Aligned_cols=374 Identities=14% Similarity=0.167 Sum_probs=225.4
Q ss_pred HhCCCCC----CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHH---H
Q 002911 45 LLNGETL----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVT---L 117 (867)
Q Consensus 45 ~~~G~d~----s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglA---L 117 (867)
+.+|.+- ....+.|+. +.+.+|..++--+.--+-.++|.. .|+...-.=.+-..+.|=..+++..+||.| =
T Consensus 72 iaLg~~~~~Y~~~iv~Pv~~-cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLd 149 (675)
T KOG0212|consen 72 IALGIKDAGYLEKIVPPVLN-CFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLD 149 (675)
T ss_pred HHhccccHHHHHHhhHHHHH-hccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHHHHH
Confidence 3456543 345666665 666666665543332222233332 233211111234566777788999999877 2
Q ss_pred HHhhcCCchhh----HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc---cccchHHHHHHHHccCCChhHHHH
Q 002911 118 RFLCRLNETEI----IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ---LLVDAPEMIEKVLSTEQDPSAKRN 190 (867)
Q Consensus 118 r~Ls~I~~~el----~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~---li~d~~~ll~~lL~~D~D~~v~~~ 190 (867)
|.+-.|..++- ++.++|-+..-+...+|+.|.--+-=++.++..| +-+ .+|++.+-+-++| +|+.+.|+.-
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~ 227 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNML-SDSSDEVRTL 227 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHh-cCCcHHHHHH
Confidence 45555554444 5678888888899999999998887777777621 111 2344445555666 8888888765
Q ss_pred HHHH----HHhcchhhH-HHH---HHHHhhhcCccchHHHHHHHHHHHHhhhcCchh----HHHHHHHHHHHHcCCChHH
Q 002911 191 AFLM----LFTCDQDRA-INY---LLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE----KGKYIKIIISLLNAPSTAV 258 (867)
Q Consensus 191 A~~~----L~ei~~~~a-l~~---L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~----~~~li~~L~~lL~s~s~aV 258 (867)
+=.+ |.+|..+-+ ++| +.-......+..|++|..++.-+..+.+..|.. ...++..+.+++.++...-
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~ 307 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMS 307 (675)
T ss_pred HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcccc
Confidence 5443 444432211 122 111223345788999999999998887765543 2444555566666655543
Q ss_pred HHHHHHH----HHhcCCChH-----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHH----HHhheecc
Q 002911 259 IYECAGT----LVSLSSAPT-----AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDL----IMDVLRAL 325 (867)
Q Consensus 259 ~~eaa~t----L~~Ls~~p~-----~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~----~~~il~~L 325 (867)
.++++.. +.++-..+. ..+.....+.+ .+++..-..|..+|+.+..+..++|+-+-.| ...++..|
T Consensus 308 i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~-~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL 386 (675)
T KOG0212|consen 308 IKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTK-YLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL 386 (675)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh
Confidence 3444332 334322221 12334444333 3456666789999999999999888755444 33455678
Q ss_pred cCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHc
Q 002911 326 NSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLG 405 (867)
Q Consensus 326 ~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~ 405 (867)
+|++..|-.++|+++..+|++.|-...+++++.-|.-+.. +..-.+....--|.++|... .++.+...+-++|.
T Consensus 387 sd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e----~~~~l~~Rg~lIIRqlC~lL--~aE~IYr~~a~ILe 460 (675)
T KOG0212|consen 387 SDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE----DTKLLEVRGNLIIRQLCLLL--NAERIYRSIADILE 460 (675)
T ss_pred cCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh----hhHHHHhhhhHHHHHHHHHh--CHHHHHHHHHHHHh
Confidence 9999999999999999999998887777777665555542 12222222222334444332 24566777777766
Q ss_pred CCC-cccHHHHHHHHHHHHHhCccc
Q 002911 406 DSN-VASAIDVIIFVREIIEMNPKL 429 (867)
Q Consensus 406 ~~~-~~v~~evi~~l~~ii~~~p~l 429 (867)
... -..+...+..+-.++-..|++
T Consensus 461 ~e~nl~FAstMV~~Ln~iLlTStEL 485 (675)
T KOG0212|consen 461 REENLKFASTMVQALNTILLTSTEL 485 (675)
T ss_pred ccccchHHHHHHHHHHhhhcccHHH
Confidence 543 356667777877777777774
No 35
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.32 E-value=3.4e-06 Score=74.88 Aligned_cols=86 Identities=27% Similarity=0.344 Sum_probs=68.9
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHH
Q 002911 99 QNLRNNL-QHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEK 177 (867)
Q Consensus 99 NsL~KDL-~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~ 177 (867)
..|.+-| +|+|+.+|..|++.|++++.++. +|.+.+.+.|++|.||+.|+.+++++.. ++..+.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAAARALGRIGD--------PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHH
Confidence 4567777 89999999999999999998876 5556677799999999999999998754 334456666
Q ss_pred HHccCCChhHHHHHHHHHH
Q 002911 178 VLSTEQDPSAKRNAFLMLF 196 (867)
Q Consensus 178 lL~~D~D~~v~~~A~~~L~ 196 (867)
++.++.+..|+..|+.+|.
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 6767778888988888763
No 36
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00027 Score=83.03 Aligned_cols=365 Identities=16% Similarity=0.199 Sum_probs=224.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHh---hcCCc-hhhHHH---HHHHHHHhcC
Q 002911 69 TIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFL---CRLNE-TEIIEP---LIPSVLQNLQ 141 (867)
Q Consensus 69 ~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~L---s~I~~-~el~e~---L~~~V~~~L~ 141 (867)
.+||+.++-+ +|+-.|.+++ --+|-=|-+.|..+.-+=+-++ -|... -.+.+. +-.++++-|.
T Consensus 40 amK~ii~~ml--------nGe~~p~Llm--~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQ 109 (948)
T KOG1058|consen 40 AMKKIIALML--------NGEDLPSLLM--TIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQ 109 (948)
T ss_pred HHHHHHHHHH--------cCCCchHHHH--HHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhcc
Confidence 4678776643 2554566544 4455566677766666655544 23322 122222 3578999999
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh------hHHHHHHHHhhhcC
Q 002911 142 HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD------RAINYLLTHVDRVS 215 (867)
Q Consensus 142 d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~------~al~~L~~~l~~i~ 215 (867)
|+|.|||-...-=+.|+ ..|++++.+.+.+...| ...++-|++||+.++..|-+. +|-+.+.+.+..
T Consensus 110 HPNEyiRG~TLRFLckL----kE~ELlepl~p~Iracl-eHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~-- 182 (948)
T KOG1058|consen 110 HPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACL-EHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLT-- 182 (948)
T ss_pred CchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHH-hCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHh--
Confidence 99999999876555554 67889888877787777 788999999999999987543 122333333322
Q ss_pred ccchHHHH-HHHHHHHHhhhcCchhHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCC
Q 002911 216 EWGELLQM-VVLELIRKVCRTNKGEKGKYIKIIISLLNAPST---AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQS 291 (867)
Q Consensus 216 ~~~p~lQ~-~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~---aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~s 291 (867)
+.||-..- .++-+ ...+|+.+..|+.-...-+.+-++ .|+.|-++-... .+|..-..-..++..+|. ++
T Consensus 183 e~DpsCkRNAFi~L----~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~--~~p~~~~~~i~~i~~lL~-st 255 (948)
T KOG1058|consen 183 EQDPSCKRNAFLML----FTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL--ANPAEKARYIRCIYNLLS-ST 255 (948)
T ss_pred ccCchhHHHHHHHH----HhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh--cCHHHhhHHHHHHHHHHh-cC
Confidence 33343222 22222 234566666665555444444333 466666666555 345444456677777774 45
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhheecc-cCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccC
Q 002911 292 DNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRAL-NSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEK 370 (867)
Q Consensus 292 D~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L-~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~ 370 (867)
++-|+|-+--.|..+. ..|.++..-...+++++ ..+|-.++..-|+.|..+- +.|.. |+..|.-.+.+..+ ..
T Consensus 256 ssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~-il~~l~mDvLrvLs---s~ 329 (948)
T KOG1058|consen 256 SSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEK-ILQGLIMDVLRVLS---SP 329 (948)
T ss_pred CchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHH-HHHHHHHHHHHHcC---cc
Confidence 8889987766666654 47777766555555553 4556678888888888876 44433 33333323333333 34
Q ss_pred CHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcC-CC------cccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcc
Q 002911 371 NGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD-SN------VASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQ 443 (867)
Q Consensus 371 d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~-~~------~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~ 443 (867)
|-++|+..+.-.-.++.. -....++++|-.=+.. .+ ..-++..+..+.....++|+....++..|++.+.+
T Consensus 330 dldvr~Ktldi~ldLvss--rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD 407 (948)
T KOG1058|consen 330 DLDVRSKTLDIALDLVSS--RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISD 407 (948)
T ss_pred cccHHHHHHHHHHhhhhh--ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhcc
Confidence 678999888877666532 2344556655543322 22 22345556667777778999999999999999987
Q ss_pred cchHhHHHHHhhHhhccCCCCCc
Q 002911 444 IRAARVCTCALWIIGEYCQSLSE 466 (867)
Q Consensus 444 i~~~~v~~~alWiLGEY~~~~~~ 466 (867)
-+ +.+-..++-.+.|--+..++
T Consensus 408 ~N-~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 408 SN-EAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred CC-HHHHHHHHHHHHHHHHhCch
Confidence 44 44555555556665555554
No 37
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00059 Score=78.11 Aligned_cols=367 Identities=15% Similarity=0.199 Sum_probs=211.0
Q ss_pred CCCCchH--HHHHHHHHHhcCCCCHHHHH---HHHHHhhcCCchhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhhcc
Q 002911 88 GRVLPEM--ILICQNLRNNLQHPNEYIRG---VTLRFLCRLNETEIIEPLIPSVLQNLQHRHP-YIRRNAILAVMAIYKL 161 (867)
Q Consensus 88 g~l~~Em--iLv~NsL~KDL~~pNe~IRg---lALr~Ls~I~~~el~e~L~~~V~~~L~d~~p-yVRK~A~lal~kI~~l 161 (867)
|++-||- .-+-=++.|-+||.|++.|- +|++-|+++.+.-+.- ...|.+-+....| .||-.|+-.+.++..
T Consensus 55 ge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~--tssiMkD~~~g~~~~~kp~AiRsL~~Vid- 131 (898)
T COG5240 55 GELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMG--TSSIMKDLNGGVPDDVKPMAIRSLFSVID- 131 (898)
T ss_pred cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHH--HHHHHHhhccCCccccccHHHHHHHHhcC-
Confidence 5555553 22234788999999999995 5888888887765543 4566666666666 899899888887744
Q ss_pred CCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh---HHHHHHHH------hhh----------cCccchHHH
Q 002911 162 PQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR---AINYLLTH------VDR----------VSEWGELLQ 222 (867)
Q Consensus 162 ~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~---al~~L~~~------l~~----------i~~~~p~lQ 222 (867)
.+.++++-.++.+.. -+..+.+..+|+..-+++-|.. .-+|+... +.+ -+..+|+.|
T Consensus 132 ---~~tv~~~er~l~~a~-Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isq 207 (898)
T COG5240 132 ---GETVYDFERYLNQAF-VSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQ 207 (898)
T ss_pred ---cchhhhHHHHhhhhc-cccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHH
Confidence 567788878887765 5788888888888877765542 12232111 111 145678899
Q ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHccCCCHHHHHHHHH
Q 002911 223 MVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSL-SSAPTAIRAAANTYSQLLLSQSDNNVKLIVLD 301 (867)
Q Consensus 223 ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~L-s~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~ 301 (867)
-.+|.+|.+.-+.+.-...++++.+..-..-.|.---.+-++....+ ..++.++ ....+++.-.+++.---|.+-+-+
T Consensus 208 YHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~-~q~rpfL~~wls~k~emV~lE~Ar 286 (898)
T COG5240 208 YHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQAL-LQLRPFLNSWLSDKFEMVFLEAAR 286 (898)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHH-HHHHHHHHHHhcCcchhhhHHHHH
Confidence 99999998887655322223333332211111111111122222222 2233332 233455544444433445555555
Q ss_pred HHHHHHhh--ChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC--C-------CcHHHHHHHHHHHHHHhhcCCccC
Q 002911 302 RLNELRSS--HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT--P-------RNINEVVLMLKKEVVKTQSGELEK 370 (867)
Q Consensus 302 ~L~~L~~~--~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~--~-------~Nv~~IV~~L~kel~~~~~~~~d~ 370 (867)
.+-.+..+ .|+.+++-+..+=..|.++....|--|+.+|-.|+- + .|++.++. |.
T Consensus 287 ~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--------------d~ 352 (898)
T COG5240 287 AVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--------------DE 352 (898)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh--------------cc
Confidence 55555544 466666655554445788888888889998876542 2 23443332 23
Q ss_pred CHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHH
Q 002911 371 NGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVC 450 (867)
Q Consensus 371 d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~ 450 (867)
+......+|.++-..+. .+..+..++.+..|+.|-.+...--++..+|.+.-++|..+..++.-|...|.+-..-+.+
T Consensus 353 Nr~IstyAITtLLKTGt--~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK 430 (898)
T COG5240 353 NRTISTYAITTLLKTGT--EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFK 430 (898)
T ss_pred cccchHHHHHHHHHcCc--hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHH
Confidence 44455556666655442 2344566666666665544433333455666666778888888888888777653333455
Q ss_pred HHHhhHhhccCCCCCcH-HHHHHHHHHhh
Q 002911 451 TCALWIIGEYCQSLSEV-ENGIATIKQCL 478 (867)
Q Consensus 451 ~~alWiLGEY~~~~~~i-~~~~~~i~~~l 478 (867)
+.++-.|.......|+. +.+++.+...+
T Consensus 431 ~~~Vdaisd~~~~~p~skEraLe~LC~fI 459 (898)
T COG5240 431 KYMVDAISDAMENDPDSKERALEVLCTFI 459 (898)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 55555555444444322 33444444333
No 38
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=1.5e-05 Score=92.20 Aligned_cols=313 Identities=17% Similarity=0.229 Sum_probs=192.9
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-cccc---chHHHHHHHHccCCChhHHH
Q 002911 114 GVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLV---DAPEMIEKVLSTEQDPSAKR 189 (867)
Q Consensus 114 glALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~---d~~~ll~~lL~~D~D~~v~~ 189 (867)
+.||..|+++--.++++.++|.+++.|.|..-.||-.+++|++.|.. -+- -.+| .....+-.+| +|+-|-|++
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L-~DKkplVRs 452 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLL-DDKKPLVRS 452 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHh-ccCccceee
Confidence 67899999999999999999999999999999999999999999987 221 1223 3333444544 899999998
Q ss_pred HHHHHHHhcchh----h----HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHH----------
Q 002911 190 NAFLMLFTCDQD----R----AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLL---------- 251 (867)
Q Consensus 190 ~A~~~L~ei~~~----~----al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL---------- 251 (867)
-++-.|....+- . ..+.|..+++.+-+.+-|.|......+..+-.. -...+++.+..+|
T Consensus 453 ITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~---A~~eLVp~l~~IL~~l~~af~kY 529 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE---AGEELVPYLEYILDQLVFAFGKY 529 (885)
T ss_pred eeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHH
Confidence 888777764421 1 234456666777677889998887777665321 1123333333333
Q ss_pred cCCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecc
Q 002911 252 NAPSTAVIYECAGTLVSL----SSAPTAIRAAANTYSQLL--LSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRAL 325 (867)
Q Consensus 252 ~s~s~aV~~eaa~tL~~L----s~~p~~lk~aa~~li~ll--~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L 325 (867)
+..|--++|.|+.+|-.- -+.|..++....++++.. ++++|.++ +--|+.+..++..-..=|-|+
T Consensus 530 Q~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~-------- 600 (885)
T KOG2023|consen 530 QKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPY-------- 600 (885)
T ss_pred hhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcccccc--------
Confidence 345667999999998632 234667888888888753 56777665 444566665554211111121
Q ss_pred cCCCHHHHHHHHHHHh-------ccCCCCcHHHHHHHHHHHHHHhhcCCccCC-----HHHHHHHHHHHHHhHccCCccH
Q 002911 326 NSPNLDIRRKTLDIVL-------ELITPRNINEVVLMLKKEVVKTQSGELEKN-----GEYRQMLIQAIHSCAIKFPEVA 393 (867)
Q Consensus 326 ~d~d~~IR~kaLelL~-------~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d-----~e~r~~lI~aI~~la~kf~~~a 393 (867)
-..|-.++.+++. ..-++..++ ..|+| -++-.-+++.+|.=.+. -++
T Consensus 601 ---~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~----------------~pdkdfiI~sLDL~SGLaegLg~~ie~--Lva 659 (885)
T KOG2023|consen 601 ---AQPVYQRCFRILQKTLQLLAKVQQDPTVE----------------APDKDFIIVSLDLLSGLAEGLGSHIEP--LVA 659 (885)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhccCCcccc----------------CCCcceEEEeHHHHhHHHHHhhhchHH--Hhh
Confidence 1123333333333 222111111 00111 22333344444332111 011
Q ss_pred -HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcc----cc--hHhHHHHHhhHhhccCCCCC
Q 002911 394 -STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQ----IR--AARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 394 -~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~----i~--~~~v~~~alWiLGEY~~~~~ 465 (867)
+..++.++.++.|.-+.+++.+...+.++..-.++ .++..+-+.+.. .. .-.+.-.|+|.+||.+-...
T Consensus 660 ~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~---~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 660 QSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE---HVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG 735 (885)
T ss_pred hccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---hccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence 24888999999999999999999999998865443 233333333321 11 23578999999999876554
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.26 E-value=4.8e-05 Score=81.72 Aligned_cols=174 Identities=22% Similarity=0.324 Sum_probs=128.9
Q ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhhccCCCcccccc--hHHHHHHHHccCCChhHHHHHHHHHHhcchhhH-----HH
Q 002911 134 PSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQLLVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA-----IN 205 (867)
Q Consensus 134 ~~V~~~L~-d~~pyVRK~A~lal~kI~~l~~~p~li~d--~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a-----l~ 205 (867)
..+...|+ .++|++++.|..+++..-..|...+.+.+ ..+++.++| .++++.++..|+.+|..+..... -.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 34455666 46899999999999987553344455555 367888876 88999999999999998764421 23
Q ss_pred HHHHHhhhc--CccchHHHHHHHHHHHHhhhcCc--hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHH---
Q 002911 206 YLLTHVDRV--SEWGELLQMVVLELIRKVCRTNK--GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRA--- 278 (867)
Q Consensus 206 ~L~~~l~~i--~~~~p~lQ~~iL~ll~~~~~~~p--~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~--- 278 (867)
|+.+.+..+ ..++...|+..|++|+.+...+. ......+..+.++|.+.+..+...+.++|+.|+.+|...+.
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~ 173 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS 173 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 555555543 23566789999999999976542 23355677788999999999999999999999999876554
Q ss_pred --HHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 279 --AANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 279 --aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
+...++.+|..+.+.++-..+|.-+..|..
T Consensus 174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 174 AQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred ccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 346788888777778887777777777753
No 40
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00064 Score=83.77 Aligned_cols=337 Identities=15% Similarity=0.172 Sum_probs=197.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCc------hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcc-CCCcc-----
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE------TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL-PQGEQ----- 166 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~------~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l-~~~p~----- 166 (867)
+.+..-.+|||+-.|-.|++.|+++.. ...+..+.+-..+|+.|++.-||-.|+-|+..+... +..++
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 556677789999999999999998752 223446777888899998766999999999988772 01122
Q ss_pred --cccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH---HHHHHHHhh---hc---CccchHHHHHHHHHHHHhhhc
Q 002911 167 --LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA---INYLLTHVD---RV---SEWGELLQMVVLELIRKVCRT 235 (867)
Q Consensus 167 --li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a---l~~L~~~l~---~i---~~~~p~lQ~~iL~ll~~~~~~ 235 (867)
++|.....+..++ .+.|......+|.+|.|+....+ -++|..++. ++ .+.++-....+|+++.-+...
T Consensus 201 ~~llP~~l~vl~~~i-~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 201 RDLLPSLLNVLQEVI-QDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHhHHHHHHhHhhh-hccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 3333334444544 66777777778888887643321 122322221 11 245565577778887765443
Q ss_pred -------CchhHHHHHHHHHHHHcC------------------CChHHHHH-HHHH-HHhcCCChHHHHHHHHHHHHHHc
Q 002911 236 -------NKGEKGKYIKIIISLLNA------------------PSTAVIYE-CAGT-LVSLSSAPTAIRAAANTYSQLLL 288 (867)
Q Consensus 236 -------~p~~~~~li~~L~~lL~s------------------~s~aV~~e-aa~t-L~~Ls~~p~~lk~aa~~li~ll~ 288 (867)
.+.....++..+..++.. ..+.+.-+ |... -++|++ +.+-...-..+.-++
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFEALEAML 357 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHHHHHHHh
Confidence 222333344444333321 12333322 2222 233433 222223333445566
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHH----HHhheecccCCCHHHHHHHHHHHhccCCC------CcHH-HHHHHHH
Q 002911 289 SQSDNNVKLIVLDRLNELRSSHRDIMVDL----IMDVLRALNSPNLDIRRKTLDIVLELITP------RNIN-EVVLMLK 357 (867)
Q Consensus 289 ~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~----~~~il~~L~d~d~~IR~kaLelL~~Lv~~------~Nv~-~IV~~L~ 357 (867)
.++++--|..+|-.|..+.+--++.+..+ ..-++..|+||.+-||--|++.+..+.+. +-.. .+...|.
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHH
Confidence 88999999999999999987555544433 33456779999999999999999998763 1111 1111222
Q ss_pred HHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC-ccHHHHHHHHHH-----HHcCCCcccHHHHHHHHHHHHHhC----c
Q 002911 358 KEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP-EVASTVVHLLMD-----FLGDSNVASAIDVIIFVREIIEMN----P 427 (867)
Q Consensus 358 kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~-~~a~~~v~~Ll~-----lL~~~~~~v~~evi~~l~~ii~~~----p 427 (867)
.. .. ...+..+...+..++-...+.-+ +...-|++.||+ ++..+.+.+...++..|..+..-- -
T Consensus 438 ~~-ld-----~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~ 511 (1075)
T KOG2171|consen 438 AL-LD-----STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI 511 (1075)
T ss_pred HH-hc-----ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH
Confidence 11 11 12355677777777766555433 234556666655 334445666667777777776422 1
Q ss_pred ccHHHHHHHHHHHhccc
Q 002911 428 KLRVSIITRLLDNFYQI 444 (867)
Q Consensus 428 ~lr~~il~~L~~~L~~i 444 (867)
.-...++..|...|.+.
T Consensus 512 pY~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 512 PYFDRLMPLLKNFLQNA 528 (1075)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 22344566666665543
No 41
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.25 E-value=2e-05 Score=80.26 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCC
Q 002911 292 DNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKN 371 (867)
Q Consensus 292 D~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d 371 (867)
|+.+|-.++-.+..|..++|.++++|...+..+|.|+++.||+.|+-++..|+...-+.- =..+..++..... |.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-k~~l~~~~l~~l~---D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-KGQLFSRILKLLV---DEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-hhhhhHHHHHHHc---CCC
Confidence 578899999999999999999999999999999999999999999999999987644332 1222123333332 678
Q ss_pred HHHHHHHHHHHHHhHcc-CCccHHHHHHHHHHHHcCCCc---------ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHh
Q 002911 372 GEYRQMLIQAIHSCAIK-FPEVASTVVHLLMDFLGDSNV---------ASAIDVIIFVREIIEMNPKLRVSIITRLLDNF 441 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~k-f~~~a~~~v~~Ll~lL~~~~~---------~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L 441 (867)
+++|..+...+..+..+ .|......+.-++..|..... .-...+..|+-+.+.+ +..+..++++|+.-+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHH
Confidence 99999999999999987 777665555555555554321 1122344455444433 455778889998877
Q ss_pred cccc---hHhHHHHHhhHhh
Q 002911 442 YQIR---AARVCTCALWIIG 458 (867)
Q Consensus 442 ~~i~---~~~v~~~alWiLG 458 (867)
.... .+.+.+-++.+++
T Consensus 156 ~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 156 LNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHcccccHHHHHHHHHHHH
Confidence 6544 5667777766664
No 42
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.23 E-value=0.0019 Score=72.13 Aligned_cols=256 Identities=15% Similarity=0.156 Sum_probs=156.9
Q ss_pred chhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHH
Q 002911 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPL 132 (867)
Q Consensus 53 ~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L 132 (867)
...-.+++ .+.++++.+|.-+..++..+ ...-++..+.+-|.++++.+|..|...|+.++.++.++++
T Consensus 43 ~~~~~~~~-~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~l 110 (335)
T COG1413 43 EAADELLK-LLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPL 110 (335)
T ss_pred hhHHHHHH-HHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHH
Confidence 34555666 45778888888877664433 1335778999999999999999999999999999998877
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCC----------h--hHHHHHHHHHHhcch
Q 002911 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD----------P--SAKRNAFLMLFTCDQ 200 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D----------~--~v~~~A~~~L~ei~~ 200 (867)
+..+.. |.+.+||++|+.+++++.. +.. +.++++. + .+.+ + .++.++...|..+..
T Consensus 111 i~~l~~---d~~~~vR~~aa~aL~~~~~----~~a---~~~l~~~-l-~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 111 VELLEN---DENEGVRAAAARALGKLGD----ERA---LDPLLEA-L-QDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHc---CCcHhHHHHHHHHHHhcCc----hhh---hHHHHHH-h-ccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 665554 8999999999999999876 222 3345543 3 3433 2 466777777777766
Q ss_pred hhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHH
Q 002911 201 DRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAA 280 (867)
Q Consensus 201 ~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa 280 (867)
..+...+...+.. .....+......+......+ ..+...+...+...+..|+..++.++..+.... +.
T Consensus 179 ~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~-----~~ 246 (335)
T COG1413 179 PEAIPLLIELLED---EDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIGDEE-----AV 246 (335)
T ss_pred hhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcch-----hH
Confidence 6666666555442 23345555555555554322 234466666677777777777777777765432 22
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHH
Q 002911 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINE 351 (867)
Q Consensus 281 ~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~ 351 (867)
..++..+ .+.+..++...-..+... ..+.. .......+.+.+..+|..+...+...........
T Consensus 247 ~~l~~~l-~~~~~~~~~~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 310 (335)
T COG1413 247 DALAKAL-EDEDVILALLAAAALGAL--DLAEA----ALPLLLLLIDEANAVRLEAALALGQIGQEKAVAA 310 (335)
T ss_pred HHHHHHH-hccchHHHHHHHHHhccc--Cchhh----HHHHHHHhhcchhhHHHHHHHHHHhhcccchHHH
Confidence 3333333 333444433322222210 01111 1112234556666677766666666655555443
No 43
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0027 Score=74.48 Aligned_cols=372 Identities=17% Similarity=0.183 Sum_probs=226.0
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCh
Q 002911 66 EDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHP 145 (867)
Q Consensus 66 ~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~p 145 (867)
+.+-+-||+|+|+.-++ .| -|. +-++|.|.- -.-+.-.|==+++..|-+ .+.++..-++..|++-|.+++|
T Consensus 55 kKKYV~KLlyI~llg~d-Id-FGh-----mEaV~LLss-~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~ 125 (938)
T KOG1077|consen 55 KKKYVCKLLYIYLLGYD-ID-FGH-----MEAVNLLSS-NKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNP 125 (938)
T ss_pred hHHHHHHHHHHHHhcCc-cc-cch-----HHHHHHhhc-CCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCc
Confidence 44556789999987652 11 242 234443321 111223444456666555 5688999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc---hh-----hHHHHHHHHhhhcCcc
Q 002911 146 YIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD---QD-----RAINYLLTHVDRVSEW 217 (867)
Q Consensus 146 yVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~---~~-----~al~~L~~~l~~i~~~ 217 (867)
.----|..|++.|......+...+|.+.++. ..+.-..|+..|..+|..+- |+ .-.+.+.+++++-. .
T Consensus 126 ~fv~LAL~~I~niG~re~~ea~~~DI~KlLv---S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~-~ 201 (938)
T KOG1077|consen 126 TFVCLALHCIANIGSREMAEAFADDIPKLLV---SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQH-M 201 (938)
T ss_pred HHHHHHHHHHHhhccHhHHHHhhhhhHHHHh---CCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccc-c
Confidence 9999999999999874233333444444332 24555567666655555442 22 22344555665411 1
Q ss_pred ch-HHHHHHHHHHHHhhhcCch-hHHHHHHHHHHHHc-------C---------CChHHHHHHHHHHHhcCC--ChHHHH
Q 002911 218 GE-LLQMVVLELIRKVCRTNKG-EKGKYIKIIISLLN-------A---------PSTAVIYECAGTLVSLSS--APTAIR 277 (867)
Q Consensus 218 ~p-~lQ~~iL~ll~~~~~~~p~-~~~~li~~L~~lL~-------s---------~s~aV~~eaa~tL~~Ls~--~p~~lk 277 (867)
+- ..-..++++|.+. +|. .+..+-..+..+.. + .+|=......+.|..+.+ +|....
T Consensus 202 gv~ta~~sLi~~lvk~---~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~ 278 (938)
T KOG1077|consen 202 GVVTAATSLIEALVKK---NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA 278 (938)
T ss_pred ceeeehHHHHHHHHHc---CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH
Confidence 11 1123455555443 433 33333333322221 1 134466667777766643 222223
Q ss_pred HHHHHHHHHHccCC---------CHHHHHHHHHHHHHHH---hhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002911 278 AAANTYSQLLLSQS---------DNNVKLIVLDRLNELR---SSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 278 ~aa~~li~ll~~~s---------D~Nvk~ivL~~L~~L~---~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
+...++=++|.+.. .+|.+-.+|=....++ ...|++++..+..+-..|++....||-.+||-+..|++
T Consensus 279 ~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s 358 (938)
T KOG1077|consen 279 RLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLAS 358 (938)
T ss_pred HHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHh
Confidence 33344434443322 1445544443333332 34778888888888788999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh
Q 002911 346 PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM 425 (867)
Q Consensus 346 ~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~ 425 (867)
++-..+.|+.=...+...... ++|..+|+.++.-+...|.+ +.+..+|+-|+.+|......+.+|.+.-+.-+.++
T Consensus 359 s~~s~davK~h~d~Ii~sLkt--erDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 359 SEFSIDAVKKHQDTIINSLKT--ERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred ccchHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 977666665433222222222 57889999999999988865 56889999999999999888999988777777777
Q ss_pred Cc---ccHHHHHHHHHHHhcccchHhHHHHHhhHh
Q 002911 426 NP---KLRVSIITRLLDNFYQIRAARVCTCALWII 457 (867)
Q Consensus 426 ~p---~lr~~il~~L~~~L~~i~~~~v~~~alWiL 457 (867)
|. +..-.++-+|++.-.+..+.++--.++-|+
T Consensus 435 yAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiV 469 (938)
T KOG1077|consen 435 YATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV 469 (938)
T ss_pred hcCCcchhHHHHHHHHHHhcccccHHHHHHhheeE
Confidence 53 345567777887777766666544444333
No 44
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.13 E-value=0.0006 Score=78.23 Aligned_cols=242 Identities=15% Similarity=0.037 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhH
Q 002911 109 NEYIRGVTLRFLCRLNETEIIEPLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSA 187 (867)
Q Consensus 109 Ne~IRglALr~Ls~I~~~el~e~L~~~V~~~L-~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v 187 (867)
++-+++- |..|...+ +...+.+ ...| .+..+-||..|+.++..... + ...+.+-..| .|.++.|
T Consensus 38 deRL~Ah-LdgL~~~G-~~a~~~L----~~aL~~d~~~ev~~~aa~al~~~~~----~----~~~~~L~~~L-~d~~~~v 102 (410)
T TIGR02270 38 EERLLAH-VDGLVLAG-KAATELL----VSALAEADEPGRVACAALALLAQED----A----LDLRSVLAVL-QAGPEGL 102 (410)
T ss_pred HHHHHHH-HHHHHHhh-HhHHHHH----HHHHhhCCChhHHHHHHHHHhccCC----h----HHHHHHHHHh-cCCCHHH
Confidence 3444444 55555555 4554444 4456 57889999988888764432 2 2234444455 7889999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002911 188 KRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLV 267 (867)
Q Consensus 188 ~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~ 267 (867)
+.++..+|.++....+...|...++ ..+|+.+..++..+..... + -.+.+..+|++.++.|+-+|+.++.
T Consensus 103 r~aaa~ALg~i~~~~a~~~L~~~L~---~~~p~vR~aal~al~~r~~-~------~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 103 CAGIQAALGWLGGRQAEPWLEPLLA---ASEPPGRAIGLAALGAHRH-D------PGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHhc---CCChHHHHHHHHHHHhhcc-C------hHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999888888887774 5678999888888776332 2 2357788888999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCC
Q 002911 268 SLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR 347 (867)
Q Consensus 268 ~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~ 347 (867)
.+.... +...+. ..+.+.|+.||..++..+..+.. +..+.. ++.....++...+.....++....++
T Consensus 173 ~l~~~~-----a~~~L~-~al~d~~~~VR~aA~~al~~lG~--~~A~~~----l~~~~~~~g~~~~~~l~~~lal~~~~- 239 (410)
T TIGR02270 173 ELPRRL-----SESTLR-LYLRDSDPEVRFAALEAGLLAGS--RLAWGV----CRRFQVLEGGPHRQRLLVLLAVAGGP- 239 (410)
T ss_pred hhcccc-----chHHHH-HHHcCCCHHHHHHHHHHHHHcCC--HhHHHH----HHHHHhccCccHHHHHHHHHHhCCch-
Confidence 986531 222233 33578888999999888877753 444432 22223455666665555555444444
Q ss_pred cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcC
Q 002911 348 NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD 406 (867)
Q Consensus 348 Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~ 406 (867)
.++..|. ++.+ ++.+|..++.++|.++.- ..+..|++.+.+
T Consensus 240 ---~a~~~L~-~ll~--------d~~vr~~a~~AlG~lg~p------~av~~L~~~l~d 280 (410)
T TIGR02270 240 ---DAQAWLR-ELLQ--------AAATRREALRAVGLVGDV------EAAPWCLEAMRE 280 (410)
T ss_pred ---hHHHHHH-HHhc--------ChhhHHHHHHHHHHcCCc------chHHHHHHHhcC
Confidence 3333332 2221 234788888888877642 345555555554
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00048 Score=80.13 Aligned_cols=306 Identities=18% Similarity=0.240 Sum_probs=197.0
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHH---HHHHHccCCChhHHHHHHHHHHhcchh
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEM---IEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~l---l~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
.++....+-..+.+++.+.+|.+|-..=.-+..|.. .+. +..+|++ +..+| ..+|....-.||.+|..|+.+
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s--~~~--~~~wpelLp~L~~~L-~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIAS--TGG--LQHWPELLPQLCELL-DSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeec--ccc--cccchhHHHHHHHHh-cCCcccccchhHHHHHHHHhh
Confidence 457777888888899999999999887777777766 221 2334443 44444 677778888899999999888
Q ss_pred hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHHHHH
Q 002911 202 RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAA 280 (867)
Q Consensus 202 ~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk~aa 280 (867)
.|-.+ +. +|. .+- ..-++..+.++.++.+|.++-.|..++-++-. .+.++-...
T Consensus 159 sa~~l-----ds-----~~~-~rp--------------l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i 213 (885)
T KOG2023|consen 159 SAQFL-----DS-----DVL-TRP--------------LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI 213 (885)
T ss_pred hHHHH-----hh-----hcc-cCc--------------hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH
Confidence 64221 10 111 000 11234445556666777677666666554321 123333334
Q ss_pred HHHHHHH---ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhhe----ecccCCCHHHHHHHHHHHhccCCCCcHHHHH
Q 002911 281 NTYSQLL---LSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVL----RALNSPNLDIRRKTLDIVLELITPRNINEVV 353 (867)
Q Consensus 281 ~~li~ll---~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il----~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV 353 (867)
.++++.+ -++.|++||--+-..+..|...+|+-+.+|...|+ ..-.|.|..|...|-+....++...-.++++
T Consensus 214 D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L 293 (885)
T KOG2023|consen 214 DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVL 293 (885)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHH
Confidence 4444322 36788999999999999999888887777755543 4457889999999999999998876555544
Q ss_pred HHHHHHHHH-------hhc--------CCc--------------------------------cC----------CHHHHH
Q 002911 354 LMLKKEVVK-------TQS--------GEL--------------------------------EK----------NGEYRQ 376 (867)
Q Consensus 354 ~~L~kel~~-------~~~--------~~~--------------------------------d~----------d~e~r~ 376 (867)
..-.+.+.. |.+ .+. ++ +..+|+
T Consensus 294 ~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRk 373 (885)
T KOG2023|consen 294 QPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRK 373 (885)
T ss_pred HHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhh
Confidence 432222211 111 000 00 145899
Q ss_pred HHHHHHHHhHccCCccHHHHHHHHHHHHc----CCCcccHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHhcccchH
Q 002911 377 MLIQAIHSCAIKFPEVASTVVHLLMDFLG----DSNVASAIDVIIFVREIIEM-----NPKLRVSIITRLLDNFYQIRAA 447 (867)
Q Consensus 377 ~lI~aI~~la~kf~~~a~~~v~~Ll~lL~----~~~~~v~~evi~~l~~ii~~-----~p~lr~~il~~L~~~L~~i~~~ 447 (867)
-...+|..++.-|++ .+++.++-+|+ ...=.+.+..+..+..|.+- +|.+ ..++..|+..|++ +.+
T Consensus 374 CSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~D-Kkp 448 (885)
T KOG2023|consen 374 CSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDD-KKP 448 (885)
T ss_pred ccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhcc-Ccc
Confidence 999999999988875 45555555554 33223444446677777652 4544 2578888888887 668
Q ss_pred hHHHHHhhHhhccCCCCC
Q 002911 448 RVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 448 ~v~~~alWiLGEY~~~~~ 465 (867)
-|++...|.+|.|+...-
T Consensus 449 lVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 449 LVRSITCWTLSRYSKWVV 466 (885)
T ss_pred ceeeeeeeeHhhhhhhHh
Confidence 899999999999998754
No 46
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.07 E-value=0.0019 Score=78.45 Aligned_cols=315 Identities=16% Similarity=0.231 Sum_probs=177.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc--ccc--cchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH-----
Q 002911 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE--QLL--VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA----- 203 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p--~li--~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a----- 203 (867)
++.+.++|++.+..+.-.|+.++.|+-- +.+ +.+ .++.+.+-+++ ...+..++..|+.+|+.++-+..
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi--~~ENK~~m~~~giV~kL~kLl-~s~~~~l~~~aLrlL~NLSfd~~~R~~m 368 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSI--FKENKDEMAESGIVEKLLKLL-PSENEDLVNVALRLLFNLSFDPELRSQM 368 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3334455555555555555555555432 111 111 12333444444 34445556666666666554321
Q ss_pred -----HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHH-HcCCChHHHHHHHHHHHhcCCC
Q 002911 204 -----INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISL-LNAPSTAVIYECAGTLVSLSSA 272 (867)
Q Consensus 204 -----l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~-----~~li~~L~~l-L~s~s~aV~~eaa~tL~~Ls~~ 272 (867)
++.|..++.+ ++ .+..++.+|..++..+. .+ ...++.+.++ +.++++.|..+.+.++++++.+
T Consensus 369 V~~GlIPkLv~LL~d----~~-~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 369 VSLGLIPKLVELLKD----PN-FREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHCCCcHHHHHHhCC----Cc-hHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 2223333321 11 23445566655554321 11 1233444443 4445566778888888888877
Q ss_pred hHHHHHHH-----HHHHHHHccCCCHHHHHHHHHHHHHHHhhC---hhhHHHHHHhheecccC-CCHHHHHHHHHHHhcc
Q 002911 273 PTAIRAAA-----NTYSQLLLSQSDNNVKLIVLDRLNELRSSH---RDIMVDLIMDVLRALNS-PNLDIRRKTLDIVLEL 343 (867)
Q Consensus 273 p~~lk~aa-----~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~---p~~l~~~~~~il~~L~d-~d~~IR~kaLelL~~L 343 (867)
+.-.+.++ ..++++.++..|+- .+..+..+.+.. ...|.+++.++.+++.. ++.+..-.+|-+|.+|
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 64433322 34566666666643 233445555432 23567888888877764 5788999999999998
Q ss_pred CCC-CcHHHHHHH--HHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHH-----HHHHHHHHHcCCC--cccHH
Q 002911 344 ITP-RNINEVVLM--LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAST-----VVHLLMDFLGDSN--VASAI 413 (867)
Q Consensus 344 v~~-~Nv~~IV~~--L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~-----~v~~Ll~lL~~~~--~~v~~ 413 (867)
..+ -++..+++. |...+.+..... ....+..-++|..+|.++. .+..+.. +++.|+++|.... +...-
T Consensus 519 ~~~~ld~~~ll~~~~llp~L~~~L~~g-~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 519 TIPDLDWAQLLQEYNLLPWLKDLLKPG-ASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred ccCCcCHHHHHHhCCHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 754 377776653 222222221110 1245788899999998883 4555544 4788999987655 45555
Q ss_pred HHHHHHHHHHHhCcccHHH------HHHHHHHHhcccc--hHhHHHHHhhHhhccCCC
Q 002911 414 DVIIFVREIIEMNPKLRVS------IITRLLDNFYQIR--AARVCTCALWIIGEYCQS 463 (867)
Q Consensus 414 evi~~l~~ii~~~p~lr~~------il~~L~~~L~~i~--~~~v~~~alWiLGEY~~~ 463 (867)
.++.++..++. +++.|+. ++..|++.+.+-+ -.++.-.++-|++||...
T Consensus 597 Qil~~f~~ll~-h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 597 QILYVFYQLLF-HEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred HHHHHHHHHHc-ChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 66666666764 4666654 4557888877632 234677789999999653
No 47
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0023 Score=76.24 Aligned_cols=401 Identities=20% Similarity=0.245 Sum_probs=221.0
Q ss_pred HHHHHHHHHhCCCCCCc--hhHHHHHhhc---CCCCcchHHHHHHHHHHHhhcCCCCCCCch-H-HHHHHHHHHhcCCCC
Q 002911 37 AMKKAIMLLLNGETLPQ--LFITIVRYVL---PSEDHTIQKLLLLYLEIIDKTDAKGRVLPE-M-ILICQNLRNNLQHPN 109 (867)
Q Consensus 37 alkklI~l~~~G~d~s~--l~~~VIk~v~---~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~E-m-iLv~NsL~KDL~~pN 109 (867)
-+||+.|+.+.-|-..+ +..-.+..++ .++|+.++-++- ... |.++-+ . =-.++.+++-+.|.+
T Consensus 64 elKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAl---rtm------~~l~v~~i~ey~~~Pl~~~l~d~~ 134 (734)
T KOG1061|consen 64 ELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALAL---RTM------GCLRVDKITEYLCDPLLKCLKDDD 134 (734)
T ss_pred hHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHh---hce------eeEeehHHHHHHHHHHHHhccCCC
Confidence 36788887665554333 2222222221 345556665543 322 111212 2 257899999999999
Q ss_pred HHHHHHHHHHhhcCC--chhhHHH--HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc--cccchHHHHHHHHc--c
Q 002911 110 EYIRGVTLRFLCRLN--ETEIIEP--LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--LLVDAPEMIEKVLS--T 181 (867)
Q Consensus 110 e~IRglALr~Ls~I~--~~el~e~--L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~--li~d~~~ll~~lL~--~ 181 (867)
+|+|-.|--+..++. .+++.+. +.+.++.++.|.+|-|--+|+.|+.-|.. ..++ +..-.+.++.++|. .
T Consensus 135 ~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e--~~~~~~~~~l~~~~~~~lL~al~ 212 (734)
T KOG1061|consen 135 PYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE--SHPSVNLLELNPQLINKLLEALN 212 (734)
T ss_pred hhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH--hCCCCCcccccHHHHHHHHHHHH
Confidence 999999988888875 4555544 78899999999999999999999999999 5653 22223445555441 1
Q ss_pred CCChhHHHHHHHHHHhcchh---hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH----HHHHHHHHHHHcCC
Q 002911 182 EQDPSAKRNAFLMLFTCDQD---RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK----GKYIKIIISLLNAP 254 (867)
Q Consensus 182 D~D~~v~~~A~~~L~ei~~~---~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~----~~li~~L~~lL~s~ 254 (867)
+-+---+..-+..|.+-.|. .+.+.+..+...+...++-.++..++++......-+... .++...+..++.+.
T Consensus 213 ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~ 292 (734)
T KOG1061|consen 213 ECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE 292 (734)
T ss_pred HhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc
Confidence 11111111111222222222 122222222223334444455666666666544333311 22223333334333
Q ss_pred ChHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHccCCCHH-HHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHH
Q 002911 255 STAVIYECAGTLVSL-SSAPTAIRAAANTYSQLLLSQSDNN-VKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDI 332 (867)
Q Consensus 255 s~aV~~eaa~tL~~L-s~~p~~lk~aa~~li~ll~~~sD~N-vk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~I 332 (867)
+ .+.|-+-+-+.-+ ...|.. ....+-.++++-+||- ||..-|+.+..++. +.-+++...++..--.+-|...
T Consensus 293 ~-e~qyvaLrNi~lil~~~p~~---~~~~~~~Ff~kynDPiYvK~eKleil~~la~--~~nl~qvl~El~eYatevD~~f 366 (734)
T KOG1061|consen 293 S-EIQYVALRNINLILQKRPEI---LKVEIKVFFCKYNDPIYVKLEKLEILIELAN--DANLAQVLAELKEYATEVDVDF 366 (734)
T ss_pred c-hhhHHHHhhHHHHHHhChHH---HHhHhHeeeeecCCchhhHHHHHHHHHHHhh--HhHHHHHHHHHHHhhhhhCHHH
Confidence 3 5555544433222 233432 2233344556666654 67777777766653 3333333333333345668889
Q ss_pred HHHHHHHHhccCCC-CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCC-cc
Q 002911 333 RRKTLDIVLELITP-RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN-VA 410 (867)
Q Consensus 333 R~kaLelL~~Lv~~-~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~-~~ 410 (867)
-++++..+++++-. +-....|..|+ ++..+ +-..+.++.+..|..|..+||...+.++..+-..+..-. +.
T Consensus 367 vrkaIraig~~aik~e~~~~cv~~lL-ell~~------~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epe 439 (734)
T KOG1061|consen 367 VRKAVRAIGRLAIKAEQSNDCVSILL-ELLET------KVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPE 439 (734)
T ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHH-HHHhh------cccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChH
Confidence 99999999987632 12266777777 33332 123578899999999999999998888888877666544 33
Q ss_pred cHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccc---hHhHHHHHhhHhhccCC
Q 002911 411 SAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIR---AARVCTCALWIIGEYCQ 462 (867)
Q Consensus 411 v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~---~~~v~~~alWiLGEY~~ 462 (867)
.....+..+++-.+.-|+ ..+.++-+++.+.+-. .-.++.+++-+.+..+.
T Consensus 440 ak~amiWilg~y~~~i~~-a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~ 493 (734)
T KOG1061|consen 440 AKAALIWILGEYAERIEN-ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT 493 (734)
T ss_pred HHHHHHHHHhhhhhccCc-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc
Confidence 444455566665555554 2233444444433211 11344555555554443
No 48
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.98 E-value=0.0019 Score=74.18 Aligned_cols=239 Identities=13% Similarity=0.043 Sum_probs=157.0
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 98 CQNLRNNL-QHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 98 ~NsL~KDL-~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
...+..-| .++.+-++..|...+.....+.. +..+.++|.+.++.||..|+.++.++.. +++...+.
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~----~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~ 123 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQEDALD----LRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLE 123 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCChHH----HHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHH
Confidence 34555555 46777888888888877666664 4556678888888899999999987755 23445555
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCCh
Q 002911 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (867)
.+| .+.||.|+++++.++.....+ +...+...++ ..++.+....++.++.+... .....|...+.+.++
T Consensus 124 ~~L-~~~~p~vR~aal~al~~r~~~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~------~a~~~L~~al~d~~~ 192 (410)
T TIGR02270 124 PLL-AASEPPGRAIGLAALGAHRHD-PGPALEAALT---HEDALVRAAALRALGELPRR------LSESTLRLYLRDSDP 192 (410)
T ss_pred HHh-cCCChHHHHHHHHHHHhhccC-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccc------cchHHHHHHHcCCCH
Confidence 655 788888888888776655443 5566666654 56788888888888887653 233456677999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHH
Q 002911 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~ka 336 (867)
.|+..|+..+..+.. +.++ ..++... ...+.-.+.-....+ .+. ..+..+.. +...+.++. +|+-+
T Consensus 193 ~VR~aA~~al~~lG~-~~A~----~~l~~~~-~~~g~~~~~~l~~~l-al~-~~~~a~~~----L~~ll~d~~--vr~~a 258 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLAW----GVCRRFQ-VLEGGPHRQRLLVLL-AVA-GGPDAQAW----LRELLQAAA--TRREA 258 (410)
T ss_pred HHHHHHHHHHHHcCC-HhHH----HHHHHHH-hccCccHHHHHHHHH-HhC-CchhHHHH----HHHHhcChh--hHHHH
Confidence 999999999988865 4332 3333322 233333322111111 111 23333333 333445543 99999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhH
Q 002911 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 337 LelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la 386 (867)
+..+..+.+++-+..++..+. +..+++.+-.++..++
T Consensus 259 ~~AlG~lg~p~av~~L~~~l~-------------d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAMR-------------EPPWARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHcCCcchHHHHHHHhc-------------CcHHHHHHHHHHHHhh
Confidence 999999999998887665432 2348888888887765
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.01 Score=70.47 Aligned_cols=380 Identities=15% Similarity=0.194 Sum_probs=212.2
Q ss_pred cCCChHHHHHHHHHHHHHHhCCCCC-----CchhHHHHHhhcCCCCcchHHHHHHHHHH-Hhh-cC--------CCCCCC
Q 002911 27 EGNDVPAKVDAMKKAIMLLLNGETL-----PQLFITIVRYVLPSEDHTIQKLLLLYLEI-IDK-TD--------AKGRVL 91 (867)
Q Consensus 27 ~s~~~~~K~~alkklI~l~~~G~d~-----s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~-~~~-~d--------~dg~l~ 91 (867)
.++|.+-+..|+.-+..+|++-|+. ...++.+.-.-|-|++.+++--+--||+. |.+ .| .|+.+-
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3456677888998888888887763 33334443335789999999999999994 332 11 122221
Q ss_pred c-----------hH-HHHHHHHHH-----hcCCCCHHH-HHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHH
Q 002911 92 P-----------EM-ILICQNLRN-----NLQHPNEYI-RGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAIL 153 (867)
Q Consensus 92 ~-----------Em-iLv~NsL~K-----DL~~pNe~I-RglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~l 153 (867)
| .+ -...+.|.| |..+=||.- -|.-|..++.....+|+++++|.|.+.+..++-.=|-.|++
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavm 386 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVM 386 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHH
Confidence 2 21 123355555 111224443 35667888888999999999999999999999999999999
Q ss_pred HHHHhhccCCCccc------ccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH---H--HHHHHH-------hhh--
Q 002911 154 AVMAIYKLPQGEQL------LVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA---I--NYLLTH-------VDR-- 213 (867)
Q Consensus 154 al~kI~~l~~~p~l------i~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a---l--~~L~~~-------l~~-- 213 (867)
|.+.+.. +|+- ++++.+-+..++ .|+...|+..+...|..+....+ . .++... +++
T Consensus 387 AFGSIl~---gp~~~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP 462 (859)
T KOG1241|consen 387 AFGSILE---GPEPDKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP 462 (859)
T ss_pred HHHhhhc---CCchhhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc
Confidence 9999976 4432 334445555544 67777788888877776643321 1 111111 111
Q ss_pred -cCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH--ccC
Q 002911 214 -VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLL--LSQ 290 (867)
Q Consensus 214 -i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll--~~~ 290 (867)
+..-.-|.-..+.+-...-.+.++. +.+. .+....++..|++-- .+.
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~q---------------t~~~---------------t~~y~~ii~~Ll~~tdr~dg 512 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQ---------------TDPA---------------TPFYEAIIGSLLKVTDRADG 512 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCC---------------CCcc---------------chhHHHHHHHHHhhcccccc
Confidence 1112223333333322222222100 0000 011122222222211 123
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccC
Q 002911 291 SDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEK 370 (867)
Q Consensus 291 sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~ 370 (867)
.++|+|-.+.+.|.+|....|+...+.+..+. .+-..+|+=.+. .+...+.+ .+.
T Consensus 513 nqsNLR~AAYeALmElIk~st~~vy~~v~~~~--------l~il~kl~q~i~---------------~~~l~~~d--r~q 567 (859)
T KOG1241|consen 513 NQSNLRSAAYEALMELIKNSTDDVYPMVQKLT--------LVILEKLDQTIS---------------SQILSLAD--RAQ 567 (859)
T ss_pred chhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH--------HHHHHHHHHHHH---------------HHhccHhh--HHH
Confidence 56899999999999998877776665433332 111122221111 01111100 011
Q ss_pred CHHHHHHHHHHHHHhHc----cCCccHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHHhCccc----HHHHHHHHHHHh
Q 002911 371 NGEYRQMLIQAIHSCAI----KFPEVASTVVHLLMDFLGDSNV-ASAIDVIIFVREIIEMNPKL----RVSIITRLLDNF 441 (867)
Q Consensus 371 d~e~r~~lI~aI~~la~----kf~~~a~~~v~~Ll~lL~~~~~-~v~~evi~~l~~ii~~~p~l----r~~il~~L~~~L 441 (867)
-.+++..+-..|+.+-. +++++++.++..+++++....+ .+-+|+...+.-+++.-..- -+.....|..-|
T Consensus 568 ~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL 647 (859)
T KOG1241|consen 568 LNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGL 647 (859)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 12445555555544444 4566677777888888887444 34456666666555432211 223455555566
Q ss_pred cccchHhHHHHHhhHhhccCCCCC
Q 002911 442 YQIRAARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 442 ~~i~~~~v~~~alWiLGEY~~~~~ 465 (867)
.+..+-.++.+++-++|.-+...+
T Consensus 648 ~n~~e~qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 648 SNFQEYQVCAAAVGLVGDLARALE 671 (859)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHH
Confidence 666778899999999998876554
No 50
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.95 E-value=0.0039 Score=73.42 Aligned_cols=373 Identities=17% Similarity=0.231 Sum_probs=210.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhccCCCcccccc---hH
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQLLVD---AP 172 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~-~pyVRK~A~lal~kI~~l~~~p~li~d---~~ 172 (867)
++.+++-|+.+.+||||--+-|+.+-+.+.-=++.|.|.++....++ +.--|++.+-++.+|.-+ .+-...|. ..
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail-~Gcsvlphl~~lv 555 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAIL-SGCSVLPHLKPLV 555 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHH-hcchhhhhhHHHH
Confidence 46789999999999999999998877666555666778888777776 788888888888888775 34444444 45
Q ss_pred HHHHHHHccCCChhHHH---HHHHHHHhcchh--------------------h---------HHHHHHH-----------
Q 002911 173 EMIEKVLSTEQDPSAKR---NAFLMLFTCDQD--------------------R---------AINYLLT----------- 209 (867)
Q Consensus 173 ~ll~~lL~~D~D~~v~~---~A~~~L~ei~~~--------------------~---------al~~L~~----------- 209 (867)
++|+..| .|....|+. +|+.+|.+.... + |+.||+.
T Consensus 556 ~ii~~gl-~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyT 634 (1172)
T KOG0213|consen 556 KIIEHGL-KDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYT 634 (1172)
T ss_pred HHHHHhh-cccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhH
Confidence 7888876 565565543 444555543210 0 1222221
Q ss_pred ------HhhhcCccchHHHHHHHHHHHHhhhcC---chh-HHHHHHHHHHHHcC-------CChH-HHHHHHHHH-----
Q 002911 210 ------HVDRVSEWGELLQMVVLELIRKVCRTN---KGE-KGKYIKIIISLLNA-------PSTA-VIYECAGTL----- 266 (867)
Q Consensus 210 ------~l~~i~~~~p~lQ~~iL~ll~~~~~~~---p~~-~~~li~~L~~lL~s-------~s~a-V~~eaa~tL----- 266 (867)
+.++..++|+-+.-.+|+.+.+-|..+ |+. +..++..++..... .+.- ++.-++...
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~ 714 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS 714 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc
Confidence 112234566666667777777766543 221 22222222211111 1111 111111111
Q ss_pred --------HhcCCChHHHH-------------------------HHHHHHHHHHccCCCHH--HHHHHHHHHH-HHHhhC
Q 002911 267 --------VSLSSAPTAIR-------------------------AAANTYSQLLLSQSDNN--VKLIVLDRLN-ELRSSH 310 (867)
Q Consensus 267 --------~~Ls~~p~~lk-------------------------~aa~~li~ll~~~sD~N--vk~ivL~~L~-~L~~~~ 310 (867)
..+...++..+ .....++.-| .+.+.. |-+.++..+. .+..+-
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Af-qeqtt~d~vml~gfg~V~~~lg~r~ 793 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAF-QEQTTEDSVMLLGFGTVVNALGGRV 793 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH-HhcccchhhhhhhHHHHHHHHhhcc
Confidence 11111111111 1111111111 122222 2333333332 222222
Q ss_pred hhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc
Q 002911 311 RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT---PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI 387 (867)
Q Consensus 311 p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~---~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~ 387 (867)
...+...+..++..|+++...+|..+++++..++- .--=+..+..|---|-.+.+ +..+|+---++.+|..+..
T Consensus 794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg---eeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG---EEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC---cccHHHHHHHHHHHHHHHH
Confidence 33344556668888999999999999999886541 11111222222222222333 3467777778888777653
Q ss_pred ------cCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc---H--HHHHHHHHHHhcccchHhHHHHHhhH
Q 002911 388 ------KFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL---R--VSIITRLLDNFYQIRAARVCTCALWI 456 (867)
Q Consensus 388 ------kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l---r--~~il~~L~~~L~~i~~~~v~~~alWi 456 (867)
++|+ +..+++.|.-+|++..+.+...+|.++..|..+-|+. | ..|.-.|++.|... ...++|++.-.
T Consensus 871 vigm~km~pP-i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nT 948 (1172)
T KOG0213|consen 871 VIGMTKMTPP-IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNT 948 (1172)
T ss_pred hccccccCCC-hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 3555 4578899999999999999999999999999888875 2 24566666666553 24689998888
Q ss_pred hhccCCCCCcHHHHHHHHHHhh
Q 002911 457 IGEYCQSLSEVENGIATIKQCL 478 (867)
Q Consensus 457 LGEY~~~~~~i~~~~~~i~~~l 478 (867)
+|=.+.-+. .++++..+-..+
T Consensus 949 fG~IakaIG-PqdVLatLlnnL 969 (1172)
T KOG0213|consen 949 FGYIAKAIG-PQDVLATLLNNL 969 (1172)
T ss_pred hhHHHHhcC-HHHHHHHHHhcc
Confidence 885444332 345555554333
No 51
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0043 Score=72.53 Aligned_cols=344 Identities=16% Similarity=0.134 Sum_probs=208.6
Q ss_pred HHHHHHhcC----CCChHHHHHHHHHHHHhhccCCCcccccchH-HHHHHHHccCCChhHHHHHHHHHHhcc----hhhH
Q 002911 133 IPSVLQNLQ----HRHPYIRRNAILAVMAIYKLPQGEQLLVDAP-EMIEKVLSTEQDPSAKRNAFLMLFTCD----QDRA 203 (867)
Q Consensus 133 ~~~V~~~L~----d~~pyVRK~A~lal~kI~~l~~~p~li~d~~-~ll~~lL~~D~D~~v~~~A~~~L~ei~----~~~a 203 (867)
.+.+++.++ |..+-+||+-+.-...+-. ...+--++.. .+-.-.|..+.+..|...-...|..+. +...
T Consensus 77 l~~~r~l~e~q~fDs~~s~~~K~~~l~~~l~~--~~~~~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~ 154 (823)
T KOG2259|consen 77 LAFRRMLLELQIFDSDESSRKKLAILLGILEA--DFENGSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDI 154 (823)
T ss_pred hhhHHHhhcchhccccchhhhHHHHHhhHhhh--hhccCchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhh
Confidence 344444443 4677788776655555412 1111112211 111112346666666665555544432 2222
Q ss_pred -HHHHHHHh---hhc-CccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHH
Q 002911 204 -INYLLTHV---DRV-SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRA 278 (867)
Q Consensus 204 -l~~L~~~l---~~i-~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~ 278 (867)
+-++.+.- ..+ .+.+-..+....-.++.....-+.+++-..+.+..+....++.|+-.|+..++.|+..-..-++
T Consensus 155 ~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~ 234 (823)
T KOG2259|consen 155 YILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA 234 (823)
T ss_pred HHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH
Confidence 12222211 111 1222222333322233322233456777788888888999999999999999999864333344
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH----------HHHHHhheecccCCCHHHHHHHHHHHhccCCCCc
Q 002911 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM----------VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRN 348 (867)
Q Consensus 279 aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l----------~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~N 348 (867)
+-...++.+ ++.+..||-.+++.+......+|.-. ..-...+-+.+.|-...||-.|.+.+..+.+-+.
T Consensus 235 ~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 235 CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 445555555 67788899999999988887774211 1222334456889899999999999987643211
Q ss_pred HHHHHHHHHHHHHH---------------hhcC--------------C----------------------ccCCHHHHHH
Q 002911 349 INEVVLMLKKEVVK---------------TQSG--------------E----------------------LEKNGEYRQM 377 (867)
Q Consensus 349 v~~IV~~L~kel~~---------------~~~~--------------~----------------------~d~d~e~r~~ 377 (867)
+-|-+.|-|.+.. +.+. | .|.-.|+|+.
T Consensus 314 -e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~A 392 (823)
T KOG2259|consen 314 -EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRA 392 (823)
T ss_pred -HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHH
Confidence 1222333333322 1111 0 0122579999
Q ss_pred HHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHh
Q 002911 378 LIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWII 457 (867)
Q Consensus 378 lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiL 457 (867)
+|.+++.+|..-|..+...++.|++++.|.-..++-.++..++.|..+ -.+++..+..+++.|++ .+.+++.++--++
T Consensus 393 AV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D-~s~dvRe~l~elL 470 (823)
T KOG2259|consen 393 AVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESLED-RSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988755 67888889999988887 4566777666666
Q ss_pred hcc-CCCCCcHHHHHHHHHHhhCCCC
Q 002911 458 GEY-CQSLSEVENGIATIKQCLGELP 482 (867)
Q Consensus 458 GEY-~~~~~~i~~~~~~i~~~l~~~p 482 (867)
+-- -...+-+.-+++.+-++++.+|
T Consensus 471 ~~~~~~d~~~i~m~v~~lL~~L~kyP 496 (823)
T KOG2259|consen 471 KNARVSDLECIDMCVAHLLKNLGKYP 496 (823)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhhhCC
Confidence 632 1111223445556666666665
No 52
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0054 Score=71.19 Aligned_cols=292 Identities=14% Similarity=0.185 Sum_probs=170.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCC
Q 002911 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (867)
Q Consensus 19 ~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~-------s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~ 91 (867)
.......+.|.+...+..+..++-.+...+.+. +...+..++++-...++.++--.--++..++--+++.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~--- 144 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ--- 144 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh---
Confidence 456667778888888888888888888877652 3456677775534555677666655555553322110
Q ss_pred chHH---HHHHHHHHhcCCCCHHHHHHHHHHhhcCC--chhhHHH-----HHHHHHHhcCCCCh-HHHHHHHHHHHHhhc
Q 002911 92 PEMI---LICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEP-----LIPSVLQNLQHRHP-YIRRNAILAVMAIYK 160 (867)
Q Consensus 92 ~Emi---Lv~NsL~KDL~~pNe~IRglALr~Ls~I~--~~el~e~-----L~~~V~~~L~d~~p-yVRK~A~lal~kI~~ 160 (867)
...+ -++-.|.+-|++|++.||.-|.=+||+|. .|..-.. .++++...+....+ -..|+|..++.++++
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 0111 24455788889999999999999999985 2222221 35566666666665 677789999999888
Q ss_pred cCCCcc----cccchHHHHHHHHccCCChhHHHHHHHHHHhcch--hhHH---------HHHHHHhhhcCccchHHHHHH
Q 002911 161 LPQGEQ----LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ--DRAI---------NYLLTHVDRVSEWGELLQMVV 225 (867)
Q Consensus 161 l~~~p~----li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~--~~al---------~~L~~~l~~i~~~~p~lQ~~i 225 (867)
- ..|. .+..+.+.+..+| ...|+.|...|+.++..+.. ...+ +.|..++ ....+-.+.-.
T Consensus 225 g-k~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL---~~~~~~v~~Pa 299 (514)
T KOG0166|consen 225 G-KNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL---GHSSPKVVTPA 299 (514)
T ss_pred C-CCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH---cCCCcccccHH
Confidence 3 2232 1112334555554 78888888888877766542 1111 1222222 12223334445
Q ss_pred HHHHHHhhhcCchhHHHH-----HHHHHHHHc-CCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHccCCCHHHHHH
Q 002911 226 LELIRKVCRTNKGEKGKY-----IKIIISLLN-APSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVKLI 298 (867)
Q Consensus 226 L~ll~~~~~~~p~~~~~l-----i~~L~~lL~-s~s~aV~~eaa~tL~~Ls~-~p~~lk~aa~~li~ll~~~sD~Nvk~i 298 (867)
|+.++..+..+.....-+ ++.+..++. +....+.-||++++.++.. +++.++++..
T Consensus 300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid----------------- 362 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID----------------- 362 (514)
T ss_pred HhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH-----------------
Confidence 555555444443333222 244444554 2233355555555555533 1222222211
Q ss_pred HHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHH
Q 002911 299 VLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINE 351 (867)
Q Consensus 299 vL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~ 351 (867)
......++++|...+..+|+.|.=.+.+++...+-+.
T Consensus 363 ----------------a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 363 ----------------ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred ----------------cccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH
Confidence 1233446678888899999999999999999988544
No 53
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.82 E-value=0.0065 Score=73.43 Aligned_cols=261 Identities=16% Similarity=0.209 Sum_probs=164.1
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHH
Q 002911 115 VTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLM 194 (867)
Q Consensus 115 lALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~ 194 (867)
.||...|-=..+.++-.+...+++ .+++.-+|--|.+.++.+.+. +++.-.++++..+-..+ +.++..|+.+|-.+
T Consensus 805 A~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvfa~LslGElgr~-~~~s~~~e~~~~iieaf-~sp~edvksAAs~A 880 (1233)
T KOG1824|consen 805 AALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVFALLSLGELGRR-KDLSPQNELKDTIIEAF-NSPSEDVKSAASYA 880 (1233)
T ss_pred HHHHHhccccchhHHHHHHHHHhC--CCCchhHHHHHHhhhhhhccC-CCCCcchhhHHHHHHHc-CCChHHHHHHHHHH
Confidence 344444443455555555544444 345667777788888888773 34444556676655554 78888999999999
Q ss_pred HHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhh---cC--chhHHHHHHHHHHHHcCC---ChHHHHHHHHHH
Q 002911 195 LFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCR---TN--KGEKGKYIKIIISLLNAP---STAVIYECAGTL 266 (867)
Q Consensus 195 L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~---~~--p~~~~~li~~L~~lL~s~---s~aV~~eaa~tL 266 (867)
|..+.-.+--.||.-++.++. ..|.-|--+|.-+..... .+ .+...++...|..-.... +..|+-||..-+
T Consensus 881 LGsl~vgnl~~yLpfil~qi~-sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 881 LGSLAVGNLPKYLPFILEQIE-SQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred hhhhhcCchHhHHHHHHHHHh-cchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 999876544445555555542 234445444444443321 11 223556666666555543 456888888887
Q ss_pred HhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhh----HHHHHHhheecccCCCHHHHHHHHHHHhc
Q 002911 267 VSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI----MVDLIMDVLRALNSPNLDIRRKTLDIVLE 342 (867)
Q Consensus 267 ~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~----l~~~~~~il~~L~d~d~~IR~kaLelL~~ 342 (867)
+...+. . ...+ ++....+++++.|..++..+.-...-+|.. +++.+.+|+..+.|||..|||.||-.+-.
T Consensus 960 ~l~epe--s---Llpk-L~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nS 1033 (1233)
T KOG1824|consen 960 VLIEPE--S---LLPK-LKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNS 1033 (1233)
T ss_pred HhCChH--H---HHHH-HHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 777543 1 2233 344557889999999999998777666654 45566699999999999999999999987
Q ss_pred cCC--CCcHHHHHHHHHHHHHH----------hhc-----CCccCCHHHHHHHHHHHHHhH
Q 002911 343 LIT--PRNINEVVLMLKKEVVK----------TQS-----GELEKNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 343 Lv~--~~Nv~~IV~~L~kel~~----------~~~-----~~~d~d~e~r~~lI~aI~~la 386 (867)
-+. +.=|.+++++|+..+-. .+. ...|++-+.|+.+..++..+-
T Consensus 1034 aahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLL 1094 (1233)
T KOG1824|consen 1034 AAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLL 1094 (1233)
T ss_pred HHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHH
Confidence 663 23455666655543321 111 013455677777777776654
No 54
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.0057 Score=71.50 Aligned_cols=372 Identities=16% Similarity=0.175 Sum_probs=204.4
Q ss_pred HHhCCCCCCchhHHHHHhhcCCCCcc-hHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHH--------
Q 002911 44 LLLNGETLPQLFITIVRYVLPSEDHT-IQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRG-------- 114 (867)
Q Consensus 44 l~~~G~d~s~l~~~VIk~v~~S~d~~-lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRg-------- 114 (867)
.+..|.+.........+ ++.+.+.. .++..|-.|..+ .+ .|-...+=......+.+-.++.+++-|-
T Consensus 125 ~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~aa~~~ag~v--~g-~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~ 200 (569)
T KOG1242|consen 125 VLSKGLSGEYVLELLLE-LLTSTKIAERAGAAYGLAGLV--NG-LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFE 200 (569)
T ss_pred HHhhccCHHHHHHHHHH-HhccccHHHHhhhhHHHHHHH--cC-cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHH
Confidence 45567777777777777 44555553 455666666655 21 1211111134556777777776655443
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch-HHHHHHHHccCCChhHHHHHHH
Q 002911 115 VTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-PEMIEKVLSTEQDPSAKRNAFL 193 (867)
Q Consensus 115 lALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~-~~ll~~lL~~D~D~~v~~~A~~ 193 (867)
.+-..||...+|.+++ +.|.|..+..|..++||..|..|+-.+-.- .++.-++.+ +.++..++ .+ ....+.+++.
T Consensus 201 ~~~~~Lg~~~EPyiv~-~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~-~~~~aVK~llpsll~~l~-~~-kWrtK~asle 276 (569)
T KOG1242|consen 201 AAQGNLGPPFEPYIVP-ILPSILTNFGDKINKVREAAVEAAKAIMRC-LSAYAVKLLLPSLLGSLL-EA-KWRTKMASLE 276 (569)
T ss_pred HHHHhcCCCCCchHHh-hHHHHHHHhhccchhhhHHHHHHHHHHHHh-cCcchhhHhhhhhHHHHH-HH-hhhhHHHHHH
Confidence 2335667777888754 578999999999999999999998887762 333333321 33343322 11 2223333332
Q ss_pred HHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC--
Q 002911 194 MLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-- 271 (867)
Q Consensus 194 ~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-- 271 (867)
.|.-+ ....|. |+.. ....+++.+.+.|..+-+.|+-.+..++..+..
T Consensus 277 llg~m----------------~~~ap~-qLs~-------------~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 277 LLGAM----------------ADCAPK-QLSL-------------CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred HHHHH----------------HHhchH-HHHH-------------HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 22211 001111 1111 123455666777777777777777776666542
Q ss_pred -ChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH--H-HhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhcc---C
Q 002911 272 -APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNE--L-RSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLEL---I 344 (867)
Q Consensus 272 -~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~--L-~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~L---v 344 (867)
+| .++..+..+++-+ .++...+. -.++.|.. + ....+..++-.+..+-|-+++.+..++|++..+.-+| +
T Consensus 327 dN~-dI~~~ip~Lld~l-~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 327 DNP-DIQKIIPTLLDAL-ADPSCYTP-ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred ccH-HHHHHHHHHHHHh-cCcccchH-HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 33 3555555555554 22211111 11111211 1 1123333344444555678889999999988877654 4
Q ss_pred -CCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH-HHHHHHHHHHHcCCC-cccHHHHHHHHHH
Q 002911 345 -TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-STVVHLLMDFLGDSN-VASAIDVIIFVRE 421 (867)
Q Consensus 345 -~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a-~~~v~~Ll~lL~~~~-~~v~~evi~~l~~ 421 (867)
++..+...+..|...+..... +..++.|..+.+++|.+-++-.... +..+..+++.+++.. ..-+......+.+
T Consensus 404 eDp~~lapfl~~Llp~lk~~~~---d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~e 480 (569)
T KOG1242|consen 404 EDPKDLAPFLPSLLPGLKENLD---DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSE 480 (569)
T ss_pred cCHHHHhhhHHHHhhHHHHHhc---CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHH
Confidence 677888888888888876543 4579999999999988765532222 344444555444332 2223334455566
Q ss_pred HHHhCc-ccHHHHHHHHHHHhcc-cchHhHHHHHhhHhhc
Q 002911 422 IIEMNP-KLRVSIITRLLDNFYQ-IRAARVCTCALWIIGE 459 (867)
Q Consensus 422 ii~~~p-~lr~~il~~L~~~L~~-i~~~~v~~~alWiLGE 459 (867)
++.... +....++..++..... .-.+.+.-+.+|+++=
T Consensus 481 vl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~ 520 (569)
T KOG1242|consen 481 VLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYL 520 (569)
T ss_pred HHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhc
Confidence 654322 2223344444433222 2245677788888763
No 55
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.018 Score=68.52 Aligned_cols=395 Identities=13% Similarity=0.156 Sum_probs=249.5
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHH----
Q 002911 58 IVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPL---- 132 (867)
Q Consensus 58 VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L---- 132 (867)
++|+.+-+++.+.|+-.-=-|-.+ .+|. =.+=|.+.+-|.+|-|.++..|-.+++.|..-|+-...
T Consensus 60 ~LKN~L~akd~~~k~~~~qRWl~l---------~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~l 130 (859)
T KOG1241|consen 60 QLKNSLTAKDPERKQQYQQRWLQL---------PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPEL 130 (859)
T ss_pred HHhhhhccCCHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHH
Confidence 455555556655554332233322 2454 46778889999999999999999999999877765554
Q ss_pred HHHHHHhcCCCCh-HHHHHHHHHHHHhhccCCCcccccc-----hHHHHHHHHccCCChhHHHHHHHHHHhcc-------
Q 002911 133 IPSVLQNLQHRHP-YIRRNAILAVMAIYKLPQGEQLLVD-----APEMIEKVLSTEQDPSAKRNAFLMLFTCD------- 199 (867)
Q Consensus 133 ~~~V~~~L~d~~p-yVRK~A~lal~kI~~l~~~p~li~d-----~~~ll~~lL~~D~D~~v~~~A~~~L~ei~------- 199 (867)
++.++.+..+..| .||..++.|++-|.+- .+|+...+ ...++......|++..|+-+|..+|...-
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555444 5999999999998884 55553322 13455555568899999999999988531
Q ss_pred -hhhHHHHHHHHhhhc-CccchHHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHHHcCCChHHHHHHHHHHHhc---
Q 002911 200 -QDRAINYLLTHVDRV-SEWGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISLLNAPSTAVIYECAGTLVSL--- 269 (867)
Q Consensus 200 -~~~al~~L~~~l~~i-~~~~p~lQ~~iL~ll~~~~~~~p~~~-----~~li~~L~~lL~s~s~aV~~eaa~tL~~L--- 269 (867)
.+.-.+|+++..=+. ...+.-+|.++++.|.|+....-... +.+...-..-+.|.+..|..+++..-.++
T Consensus 210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE 289 (859)
T KOG1241|consen 210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE 289 (859)
T ss_pred ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 111133443332111 24566678888888887665432222 22334444556788888888877644321
Q ss_pred --------C------CCh-------HHHHHHHHHHHHHHccC------CCHHHHHHHHHHHHHHHhhChhhHHHHHHhhe
Q 002911 270 --------S------SAP-------TAIRAAANTYSQLLLSQ------SDNNVKLIVLDRLNELRSSHRDIMVDLIMDVL 322 (867)
Q Consensus 270 --------s------~~p-------~~lk~aa~~li~ll~~~------sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il 322 (867)
. ..| .+++-++..++++|.++ .|+|....+=-.|..+.+.-.+-+-+|+.-|+
T Consensus 290 EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fi 369 (859)
T KOG1241|consen 290 EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFI 369 (859)
T ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHH
Confidence 0 112 13444556677777662 35788877777777777655555667888777
Q ss_pred e-cccCCCHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH-----
Q 002911 323 R-ALNSPNLDIRRKTLDIVLELITPRNINE---VVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA----- 393 (867)
Q Consensus 323 ~-~L~d~d~~IR~kaLelL~~Lv~~~Nv~~---IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a----- 393 (867)
. -+.+||+.=|..+.=....+....+... +|....+-+..... |+.-.+|....-++|+++.-.|...
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~---D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~ 446 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS---DPSLWVKDTAAWTLGRIADFLPEAIINQEL 446 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc---CchhhhcchHHHHHHHHHhhchhhcccHhh
Confidence 6 5888998777777766666666555443 33333333332221 5666788888889999887655432
Q ss_pred -HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-------C----c--ccHHHHHHHHHHHhccc--chHhHHHHHhhHh
Q 002911 394 -STVVHLLMDFLGDSNVASAIDVIIFVREIIEM-------N----P--KLRVSIITRLLDNFYQI--RAARVCTCALWII 457 (867)
Q Consensus 394 -~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~-------~----p--~lr~~il~~L~~~L~~i--~~~~v~~~alWiL 457 (867)
...+..++.-|.+...-..+.+|.|.. +.+. . | ...+.|+..|+..-+.. .+...+.++.-.|
T Consensus 447 l~~~l~~l~~gL~DePrva~N~CWAf~~-Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 447 LQSKLSALLEGLNDEPRVASNVCWAFIS-LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHH-HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 466777777777775555555554432 2221 1 1 13567889998876654 4567899999999
Q ss_pred hccCCCCCc
Q 002911 458 GEYCQSLSE 466 (867)
Q Consensus 458 GEY~~~~~~ 466 (867)
||-....++
T Consensus 526 mElIk~st~ 534 (859)
T KOG1241|consen 526 MELIKNSTD 534 (859)
T ss_pred HHHHHcCcH
Confidence 998776664
No 56
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.74 E-value=0.01 Score=69.91 Aligned_cols=278 Identities=18% Similarity=0.224 Sum_probs=160.4
Q ss_pred CCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCC
Q 002911 107 HPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD 184 (867)
Q Consensus 107 ~pNe~IRglALr~Ls~I--~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D 184 (867)
..++-..-+|-.++.+. .-|++.+.-+.++..+.+|.+.-||+.|+-++..+++ ..|+.++.+.+++-++|..| |
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck--~~~~~v~kvaDvL~QlL~td-d 109 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCK--DNPEHVSKVADVLVQLLQTD-D 109 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG----T--T-HHHHHHHHHHHTT----
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH--hHHHHHhHHHHHHHHHHhcc-c
Confidence 34677888999999987 4799999999999999999999999999999999999 78899999999999988544 4
Q ss_pred h---hHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhh-c-----Cc-hhH-HHHHHHHHHHHcC
Q 002911 185 P---SAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCR-T-----NK-GEK-GKYIKIIISLLNA 253 (867)
Q Consensus 185 ~---~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~-~-----~p-~~~-~~li~~L~~lL~s 253 (867)
+ .++.+|+..|...+|...+.-|...+......++-....+|++|+.-.. . .| .+. .-++..+..+|+.
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 4 4577888888888887665544444322224577788899999864322 1 22 233 3455677778876
Q ss_pred CChHHHHHHHHHHHhc-C-----CChHHHHHHHHHHHHHH-----ccCCCHHHHHHHHHHHHHHH-------h---hChh
Q 002911 254 PSTAVIYECAGTLVSL-S-----SAPTAIRAAANTYSQLL-----LSQSDNNVKLIVLDRLNELR-------S---SHRD 312 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~L-s-----~~p~~lk~aa~~li~ll-----~~~sD~Nvk~ivL~~L~~L~-------~---~~p~ 312 (867)
.. +.-|+-.-.++.. . ..++..+.++.-+.+.. ...+|+. .++++..-. . ....
T Consensus 190 VT-aeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e----~Idrli~C~~~Alp~fs~~v~Ssk 264 (556)
T PF05918_consen 190 VT-AEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPE----SIDRLISCLRQALPFFSRGVSSSK 264 (556)
T ss_dssp ---HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHH----HHHHHHHHHHHHGGG-BTTB--HH
T ss_pred cc-HHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHH----HHHHHHHHHHHhhHHhcCCCChHH
Confidence 43 3555544444332 1 12334444544444433 1223333 222222211 1 1233
Q ss_pred hHHHHHHhheecccCCCHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHHHhhc---CCccCCHHHHHHHHHHHHHhH
Q 002911 313 IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP---RNINEVVLMLKKEVVKTQS---GELEKNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 313 ~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~---~Nv~~IV~~L~kel~~~~~---~~~d~d~e~r~~lI~aI~~la 386 (867)
++.=+...++..+++=+...|..-|.++..++.- ....++++.+..-|..+.- .+.+-+..+..-+.-+.|.+|
T Consensus 265 fv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La 344 (556)
T PF05918_consen 265 FVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLA 344 (556)
T ss_dssp HHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHh
Confidence 5555566688888887778888888888776643 2345555555544443322 111223467888999999999
Q ss_pred ccCCcc
Q 002911 387 IKFPEV 392 (867)
Q Consensus 387 ~kf~~~ 392 (867)
.+.|..
T Consensus 345 ~k~p~~ 350 (556)
T PF05918_consen 345 RKSPNS 350 (556)
T ss_dssp TT-THH
T ss_pred hhCcch
Confidence 988864
No 57
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.048 Score=65.32 Aligned_cols=130 Identities=21% Similarity=0.269 Sum_probs=84.4
Q ss_pred hcccCCCCcceEEEEeeeecceeEEEEEEeecCc-ccccceEEEEEecCC---eEEeecCCccccCC-------------
Q 002911 719 LQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTK-ETLQNLCLELATMGD---LKLVERPQNYTLAP------------- 781 (867)
Q Consensus 719 ~qltg~sDpvY~Ea~v~v~~~di~ldvl~vNqt~-~tlqn~~~el~t~g~---lk~v~~p~~~~l~p------------- 781 (867)
.+||--.--.|+-..-++-.--+||-..+.|.++ ..|.|+.+++..-|+ ++-+--|+----.|
T Consensus 629 i~LTE~e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~~evl~~i~~~slpy~qp~~~~tl~~~p~~~ 708 (865)
T KOG1078|consen 629 IELTEPEAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGGEEVLEKVPTMSLPYDQPGSAFTLVEFPKDD 708 (865)
T ss_pred ceeccccceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCCceeeeeccccCCCCCCCcceEEEEEcCCCC
Confidence 4555555555666666666667888888888765 478999999988888 44332232111222
Q ss_pred ------CCeEEEEEEEEEEecccceEEEEEEEecCCccccceEEccccccccccccccCCCCcHHHHhhccccc--ccee
Q 002911 782 ------ESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFE--WENK 853 (867)
Q Consensus 782 ------~~~~~~~~~ikv~ste~g~ifg~i~y~~~~~~~~~~v~ln~i~idi~dyi~p~~~~~~~FR~mW~~fe--WENk 853 (867)
+=.++.+.++|.-.-.||.-+ ..|-+..| +|.|+.+..-|||+|...+ .|+.-|.|.. -|-.
T Consensus 709 p~~v~~sf~~tlkFtvkdcdp~Tgepd-------edGyeDEY-~LEdlevtv~D~iqkv~k~--NF~aawde~~~e~eet 778 (865)
T KOG1078|consen 709 PWAIAEGFGNTLKFTVKDCDPNTGEPD-------DEGYEDEY-VLEDLEVTVGDFVQKVRKS--NFPAAWDELGFEAEET 778 (865)
T ss_pred chhhhccceeeEEEEEEecCCCCCCCC-------ccCcccce-eeeceeeehhhhhhHhhcc--cchhhHHhcCcchhee
Confidence 334566667777666677433 12334556 8999999999999998865 6888888755 4444
Q ss_pred EEeec
Q 002911 854 VSLAL 858 (867)
Q Consensus 854 i~v~t 858 (867)
.++.+
T Consensus 779 F~Ls~ 783 (865)
T KOG1078|consen 779 FNLST 783 (865)
T ss_pred eeccc
Confidence 44433
No 58
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0033 Score=68.88 Aligned_cols=373 Identities=17% Similarity=0.174 Sum_probs=226.1
Q ss_pred CCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc----hhhHHH---HHHHHH
Q 002911 65 SEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNE----TEIIEP---LIPSVL 137 (867)
Q Consensus 65 S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~----~el~e~---L~~~V~ 137 (867)
|.+..+.|=.|+++-..-.. | +++-.--+.-.++--++|+.+-|.+.|=-.+|++.. ..++-. +-+-|.
T Consensus 58 SDnlnlqrsaalafAeitek---~-vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~ 133 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEK---G-VRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLIL 133 (550)
T ss_pred ccccccchHHHHHHHHHHHH---H-HHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHH
Confidence 67778888888876544111 1 011111233455667899999999999999996642 222222 334555
Q ss_pred HhcCCCChHHHHHHHHHHHHhhccCCCccccc----chHHHHHHHHccCCChhHHHHHHHHHHhcchh---h-------H
Q 002911 138 QNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---R-------A 203 (867)
Q Consensus 138 ~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~---~-------a 203 (867)
+.+.| +--||++|+-|+..+.. ++..-.. .+.+.+.+ |.+.+|..|+++|.-+|..+-.. + +
T Consensus 134 qmmtd-~vevqcnaVgCitnLaT--~d~nk~kiA~sGaL~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 134 QMMTD-GVEVQCNAVGCITNLAT--FDSNKVKIARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred HhcCC-CcEEEeeehhhhhhhhc--cccchhhhhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 66554 56799999999999888 5432211 12345555 67899999999999888866422 1 3
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCc------hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHH
Q 002911 204 INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK------GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIR 277 (867)
Q Consensus 204 l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p------~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk 277 (867)
+++|...++ ..++-.|-..-..+...+.... +.-.++++.+.+++.+.++-|..+|..+|-.+++..+..+
T Consensus 210 lpvLVsll~---s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 210 LPVLVSLLK---SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred chhhhhhhc---cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 566766654 3444445544444433322100 0113688999999999999999999999999987755544
Q ss_pred HHH-----HHHHHHHccCCCHHHHHHHH--HHHHHHHhhChh---hH--HHHHHhheecccC-CCHHHHHHHHHHHhccC
Q 002911 278 AAA-----NTYSQLLLSQSDNNVKLIVL--DRLNELRSSHRD---IM--VDLIMDVLRALNS-PNLDIRRKTLDIVLELI 344 (867)
Q Consensus 278 ~aa-----~~li~ll~~~sD~Nvk~ivL--~~L~~L~~~~p~---~l--~~~~~~il~~L~d-~d~~IR~kaLelL~~Lv 344 (867)
.++ .-+++++- + +-.+.|.- -.+..|. .||. ++ +.+..-++++|.. ++.+|+..|.+.|.+|+
T Consensus 287 eiv~ag~lP~lv~Llq-s--~~~plilasVaCIrnis-ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQ-S--PMGPLILASVACIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred HHHhcCCchHHHHHHh-C--cchhHHHHHHHHHhhcc-cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 333 44677773 2 23333221 1222222 2331 11 1222334455554 45669999999999998
Q ss_pred C--CCcHHHHH-----HHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc----HHHHHHHHHHHHcCCCcccHH
Q 002911 345 T--PRNINEVV-----LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV----ASTVVHLLMDFLGDSNVASAI 413 (867)
Q Consensus 345 ~--~~Nv~~IV-----~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~----a~~~v~~Ll~lL~~~~~~v~~ 413 (867)
. ++|+..|. +.| +||.. |..-++|.++--+|..++..-... -.-++++|+..+.+.+..+..
T Consensus 363 asse~n~~~i~esgAi~kl-~eL~l------D~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~g 435 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKL-IELLL------DGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRG 435 (550)
T ss_pred hhhhhhhHHHhhcCchHHH-HHHHh------cCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcc
Confidence 5 67877764 333 35554 456789999999999988531111 124667788877777766666
Q ss_pred HHHHHHHHHHHh------------CcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCC
Q 002911 414 DVIIFVREIIEM------------NPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQ 462 (867)
Q Consensus 414 evi~~l~~ii~~------------~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~ 462 (867)
.+...+.++.+. .|. +.+=..|.+++.+ .+.-+...+.|.|-+..+
T Consensus 436 NaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl~S-~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 436 NAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFLAS-HELTFRHIARWTIQQLLE 493 (550)
T ss_pred cHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence 665555555432 232 3445556665543 344567778888765533
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.57 E-value=0.00042 Score=61.38 Aligned_cols=86 Identities=24% Similarity=0.317 Sum_probs=63.4
Q ss_pred HHHHHHhc-CCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHh
Q 002911 133 IPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHV 211 (867)
Q Consensus 133 ~~~V~~~L-~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l 211 (867)
+|.+.+.| +|++++||..|+.+++++.. + ++.+.+..++ .|.|+.|+.+|+.+|..+..+.+++.|...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----~----~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l 71 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----P----EAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----H----HHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----H----hHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35667777 89999999999999996644 3 4445666666 8999999999999999998877888887776
Q ss_pred hhcCccchHHHHHHHHHH
Q 002911 212 DRVSEWGELLQMVVLELI 229 (867)
Q Consensus 212 ~~i~~~~p~lQ~~iL~ll 229 (867)
.+ +.++..+...++.|
T Consensus 72 ~~--~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 72 QD--DDDEVVREAAAEAL 87 (88)
T ss_dssp TC---SSHHHHHHHHHHH
T ss_pred cC--CCcHHHHHHHHhhc
Confidence 53 23344455555443
No 60
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.041 Score=64.68 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc
Q 002911 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~-----~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d 170 (867)
|..+.=++-.......+|-.++.++..++. +.--+.+...+.....+.++.||+.|+.++..+.. .+ . ++.
T Consensus 158 l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~-k-L~~ 233 (823)
T KOG2259|consen 158 LLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GF-K-LSK 233 (823)
T ss_pred HHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cc-c-ccH
Confidence 444444444444444555555555555442 22233444445566677778888888777776654 11 1 122
Q ss_pred h-HHHHHHHHccCCChhHHHHHHHHHH
Q 002911 171 A-PEMIEKVLSTEQDPSAKRNAFLMLF 196 (867)
Q Consensus 171 ~-~~ll~~lL~~D~D~~v~~~A~~~L~ 196 (867)
+ -....+.+ +|.+..|+.+|+.++.
T Consensus 234 ~~Y~~A~~~l-sD~~e~VR~aAvqlv~ 259 (823)
T KOG2259|consen 234 ACYSRAVKHL-SDDYEDVRKAAVQLVS 259 (823)
T ss_pred HHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 1 22233333 6777777777765544
No 61
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.46 E-value=0.092 Score=60.49 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhhcCcchHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCCcHHHHH----HHHHHhh
Q 002911 560 AVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIV----VCIRLLC 626 (867)
Q Consensus 560 ~~la~~l~kl~~r~~~~~~~~~~~n~~~a~~~~i~~~~l~~~~~~~~~~~id~d~~~ri~----~~~~~l~ 626 (867)
.+|-++|+||+-|..++ .-++.+.+..|-++.+|+..+...++.+.++|. .++.+|.
T Consensus 385 ~~lmt~laKLAsr~~dl----------~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk 445 (459)
T PF14764_consen 385 TVLMTALAKLASRSQDL----------IPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLK 445 (459)
T ss_pred HHHHHHHHHHHHhCHhh----------hHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhc
Confidence 68899999998877754 347788999999998888776666666666655 4444444
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.40 E-value=0.00082 Score=70.82 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=105.2
Q ss_pred HHHHHHHh----cCCChHHHHHHHHHHHHHHhCC--CCCCchhHHHHH-------hhcCCCCcchHHHHHHHHHHHhhcC
Q 002911 19 ANEIKEAL----EGNDVPAKVDAMKKAIMLLLNG--ETLPQLFITIVR-------YVLPSEDHTIQKLLLLYLEIIDKTD 85 (867)
Q Consensus 19 ~~eIr~~L----~s~~~~~K~~alkklI~l~~~G--~d~s~l~~~VIk-------~v~~S~d~~lKkL~Ylyl~~~~~~d 85 (867)
.+++.+.| .+.+=+++.+++.++-.+...| .+....++..++ ..+.+....+=+-+...+..+...-
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555 4456688899999998888877 344444444443 1334444445555555555544332
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhh-HHHH-HHHHHHhcCCCChHHHHHHHHHHHHhhccCC
Q 002911 86 AKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEI-IEPL-IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ 163 (867)
Q Consensus 86 ~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el-~e~L-~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~ 163 (867)
.+ .+.+..-.+.+.|.+-+.+++..||..|-.+|..|...-- ...+ .+.+...+.|++|-||..++.++..+.. .
T Consensus 85 ~~-~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~--~ 161 (228)
T PF12348_consen 85 GS-HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILE--K 161 (228)
T ss_dssp GG-GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT--T
T ss_pred hH-hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--H
Confidence 22 2334444567899999999999999999888887754322 2334 7788889999999999999999999988 4
Q ss_pred Cc---ccc------cchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002911 164 GE---QLL------VDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 164 ~p---~li------~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
.+ ..+ +.+.+.+.++| .|.|+.|+.+|-.++..+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWAL 204 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
Confidence 44 222 23445666666 899999998888776654
No 63
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.35 Score=56.33 Aligned_cols=378 Identities=17% Similarity=0.188 Sum_probs=210.0
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCchhH------HHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHH-----
Q 002911 28 GNDVPAKVDAMKKAIMLLLNGETLPQLFI------TIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL----- 96 (867)
Q Consensus 28 s~~~~~K~~alkklI~l~~~G~d~s~l~~------~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiL----- 96 (867)
+++.+-...++--+..+|++-|++-..+| --++ .|-|+|-+++-..--||+.+-.-.-||++..--.-
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~-~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~q 310 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGR-FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQ 310 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchh
Confidence 34455556666666666777666433322 3445 57899999999999999654322234443100011
Q ss_pred -----------HHHHHHHhc--CCCC-------H-HHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002911 97 -----------ICQNLRNNL--QHPN-------E-YIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAV 155 (867)
Q Consensus 97 -----------v~NsL~KDL--~~pN-------e-~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal 155 (867)
+.--|.+-| |++| + .--|.-|...+.++-..+.+|+...|.+++..++-.=|-.|++|.
T Consensus 311 n~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 311 NHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHh
Confidence 222233333 2333 2 234566788888888999999999999999999999999999999
Q ss_pred HHhhccCCCcc------cccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH--HH-----------HHHHHhhh--c
Q 002911 156 MAIYKLPQGEQ------LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--IN-----------YLLTHVDR--V 214 (867)
Q Consensus 156 ~kI~~l~~~p~------li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a--l~-----------~L~~~l~~--i 214 (867)
+.+.. +|. ++|++.+-|+... .|+-.-|+..+.-++..|...-| +. .|..+.+- +
T Consensus 391 GSvm~---gp~~~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~ 466 (858)
T COG5215 391 GSVMH---GPCEDCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFR 466 (858)
T ss_pred hhhhc---CccHHHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchH
Confidence 99877 442 2344444444432 45555677777766766543321 00 01111100 1
Q ss_pred CccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHH
Q 002911 215 SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNN 294 (867)
Q Consensus 215 ~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~N 294 (867)
.....|....+++-+.+..+.-|+-..+++..+. ..+.. --++ ..+++|
T Consensus 467 ~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~----------------------------~~Lv~-~t~~--~~Ne~n 515 (858)
T COG5215 467 SINCSWRKENLVDHIAKAVREVESFLAKFYLAIL----------------------------NALVK-GTEL--ALNESN 515 (858)
T ss_pred HhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH----------------------------HHHHH-HHHh--hccchh
Confidence 1222333333333333222211111111111111 10000 0111 246789
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHH
Q 002911 295 VKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEY 374 (867)
Q Consensus 295 vk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~ 374 (867)
.|-.+.+.|..|...-|+.+.+....|. ++-.++|+--..+-. |+-.+=+.+ .-.++
T Consensus 516 ~R~s~fsaLgtli~~~~d~V~~~~a~~~--------~~~~~kl~~~isv~~--q~l~~eD~~-------------~~~el 572 (858)
T COG5215 516 LRVSLFSALGTLILICPDAVSDILAGFY--------DYTSKKLDECISVLG--QILATEDQL-------------LVEEL 572 (858)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHH--------HHHHHHHHHHHHHhh--hhhhhHHHH-------------HHHHH
Confidence 9999999999998888887777555443 233444443332110 000000000 01356
Q ss_pred HHHHHHHHHHhHccCCc----cHHHHHHHHHHHHcCCCccc-HHHHHHHHHHHHH----hCcccHHHHHHHHHHHhcccc
Q 002911 375 RQMLIQAIHSCAIKFPE----VASTVVHLLMDFLGDSNVAS-AIDVIIFVREIIE----MNPKLRVSIITRLLDNFYQIR 445 (867)
Q Consensus 375 r~~lI~aI~~la~kf~~----~a~~~v~~Ll~lL~~~~~~v-~~evi~~l~~ii~----~~p~lr~~il~~L~~~L~~i~ 445 (867)
+..++.-|..+..++++ +.+..+..++++|....+.. -.|+...|..+.. ++..--+.++..|...+ +..
T Consensus 573 qSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~ 651 (858)
T COG5215 573 QSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCT 651 (858)
T ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cch
Confidence 66677777777777765 45667777888888775444 4467677777665 23222344566666666 445
Q ss_pred hHhHHHHHhhHhhccCCCCC
Q 002911 446 AARVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 446 ~~~v~~~alWiLGEY~~~~~ 465 (867)
+..+...++-++|..++...
T Consensus 652 d~~v~~~avglvgdlantl~ 671 (858)
T COG5215 652 DRFVLNSAVGLVGDLANTLG 671 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 67789999999998876544
No 64
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.54 Score=56.18 Aligned_cols=270 Identities=16% Similarity=0.234 Sum_probs=145.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCc--chHHHHHH---HHHHHhhcCCCCCCCc
Q 002911 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDH--TIQKLLLL---YLEIIDKTDAKGRVLP 92 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~--~lKkL~Yl---yl~~~~~~d~dg~l~~ 92 (867)
+.++|.+.++..+..--.+...|+ +-|..-+.+++=|.++++++|+-..- ---|++=+ |.+-++..++ -.
T Consensus 6 r~~~If~k~Q~s~agh~~kl~~k~-~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~----e~ 80 (892)
T KOG2025|consen 6 RMQLIFNKIQQSDAGHYSKLLAKV-MEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDK----EE 80 (892)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHH-HHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCc----hh
Confidence 556777777655433211222222 12222334566788888877764332 22333333 3333433332 12
Q ss_pred hHH-HHHHHHHHhcCCCCHHHHHHHHHHhhcCCc------hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc
Q 002911 93 EMI-LICQNLRNNLQHPNEYIRGVTLRFLCRLNE------TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE 165 (867)
Q Consensus 93 Emi-Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~------~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p 165 (867)
+++ -..=.+.+-..+|+--||=..+..|..+.. .++..-+...+..-+.|+.|.||.-|+.|+.++-.-|.+|
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 311 122344456678888899888888877764 4555556667777788999999999999999875322222
Q ss_pred ccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHh--hhcCchhHHHH
Q 002911 166 QLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKV--CRTNKGEKGKY 243 (867)
Q Consensus 166 ~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~--~~~~p~~~~~l 243 (867)
.. ++..++..++..|+++.|+|+|+..+.-=+ ..++++...-.++....- .+.-=+++.+. +-. ...+.
T Consensus 161 e~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdn--sTlp~IveRarDV~~anR--rlvY~r~lpkid~r~l---si~kr 231 (892)
T KOG2025|consen 161 EC--PVVNLLKDLIQNDPSDEVRRAALSNISVDN--STLPCIVERARDVSGANR--RLVYERCLPKIDLRSL---SIDKR 231 (892)
T ss_pred cc--cHHHHHHHHHhcCCcHHHHHHHHHhhccCc--ccchhHHHHhhhhhHHHH--HHHHHHhhhhhhhhhh---hHHHH
Confidence 11 245677777779999999999987754211 235555544443322110 11111111111 111 11245
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHH---HHHccCCCHHHHHHHHHHHHHH
Q 002911 244 IKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYS---QLLLSQSDNNVKLIVLDRLNEL 306 (867)
Q Consensus 244 i~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li---~ll~~~sD~Nvk~ivL~~L~~L 306 (867)
+..+..-|+...-+|.-+++..|.+- -++.+...++ +.+--+....|+--+|++|-.+
T Consensus 232 v~LlewgLnDRe~sVk~A~~d~il~~-----Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 232 VLLLEWGLNDREFSVKGALVDAILSG-----WLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHH-----HhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 55666667777778888888887761 1112222222 3332233335666666666553
No 65
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.23 Score=57.70 Aligned_cols=342 Identities=15% Similarity=0.155 Sum_probs=164.2
Q ss_pred chH-HHHHHHHHHhcCCCC-HHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc
Q 002911 92 PEM-ILICQNLRNNLQHPN-EYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (867)
Q Consensus 92 ~Em-iLv~NsL~KDL~~pN-e~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~ 169 (867)
++. +++-=+|++.|...+ +.-.|.+=|-++ ..+|.-+.+-.-..+.|.++.|..--.|+-.+..|........+-|
T Consensus 55 ~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~--~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp 132 (858)
T COG5215 55 DQLRMVAGLILKNSLHANDPELQKGCSQRWLG--MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWP 132 (858)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccch
Confidence 566 344445555665444 344588888888 5677788888888889999999888888888888876311112333
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 002911 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIIS 249 (867)
Q Consensus 170 d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~ 249 (867)
++.+.+..-...++-.++++.++-.+..++...+-+-|...-+ .+|-.+..+++.
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN-----------~il~aiv~ga~k-------------- 187 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSN-----------VILFAIVMGALK-------------- 187 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhh-----------HHHHHHHHhhcc--------------
Confidence 3333332222345555678888877766553322111111110 111111111111
Q ss_pred HHcCCChHHHHHHHHHHHh-cC------CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHh--
Q 002911 250 LLNAPSTAVIYECAGTLVS-LS------SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD-- 320 (867)
Q Consensus 250 lL~s~s~aV~~eaa~tL~~-Ls------~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~-- 320 (867)
+.++++|++.+-++|.. +. ..........+..++. -+.+|-+++..+...|.+|..-+-.+++.|...
T Consensus 188 --~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea-tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 188 --NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA-TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred --cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233444444444332 10 0000000011111111 123444444444444444443333333322211
Q ss_pred ---heecccCCCHHHHHHHHHHHhccCCCCc-----------------------HHHHHHHHHHHHHHhhcCCccCCHHH
Q 002911 321 ---VLRALNSPNLDIRRKTLDIVLELITPRN-----------------------INEVVLMLKKEVVKTQSGELEKNGEY 374 (867)
Q Consensus 321 ---il~~L~d~d~~IR~kaLelL~~Lv~~~N-----------------------v~~IV~~L~kel~~~~~~~~d~d~e~ 374 (867)
..+...+++..|+..+++.-..+|.+++ +.+|+++|++-|.+.-..-++++...
T Consensus 265 ~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~ 344 (858)
T COG5215 265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP 344 (858)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 1234566777777777776665555543 55566666655544211111222222
Q ss_pred HHHHHHHHHHhHccCCcc-HHHHHHHHHHHHcC----CCcccHHHHHHHHHHHHHh-CcccHHHHHHHHHHHhccc-chH
Q 002911 375 RQMLIQAIHSCAIKFPEV-ASTVVHLLMDFLGD----SNVASAIDVIIFVREIIEM-NPKLRVSIITRLLDNFYQI-RAA 447 (867)
Q Consensus 375 r~~lI~aI~~la~kf~~~-a~~~v~~Ll~lL~~----~~~~v~~evi~~l~~ii~~-~p~lr~~il~~L~~~L~~i-~~~ 447 (867)
...+-. |-..|... -+.++.-.+.|+.. .+-.-++.++..+..++.. ....+.+++..++..+... .++
T Consensus 345 smaA~s----CLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~ 420 (858)
T COG5215 345 SMAASS----CLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS 420 (858)
T ss_pred hhhHHH----HHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc
Confidence 222222 22222221 12333334444432 2223334445666666642 2344556666666654332 223
Q ss_pred --hHHHHHhhHhhccCCCCCcH
Q 002911 448 --RVCTCALWIIGEYCQSLSEV 467 (867)
Q Consensus 448 --~v~~~alWiLGEY~~~~~~i 467 (867)
-++...+|++|..+++.+++
T Consensus 421 ~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 421 CLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred eeehhhHHHHHHHHHHHHHHHh
Confidence 47999999999988876654
No 66
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.19 E-value=0.34 Score=57.87 Aligned_cols=424 Identities=14% Similarity=0.144 Sum_probs=240.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH--HhCCCCCCchhHHHHHh--------hcCCCCcchHHHHHHHHHHHhhcCCCCC
Q 002911 20 NEIKEALEGNDVPAKVDAMKKAIML--LLNGETLPQLFITIVRY--------VLPSEDHTIQKLLLLYLEIIDKTDAKGR 89 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l--~~~G~d~s~l~~~VIk~--------v~~S~d~~lKkL~Ylyl~~~~~~d~dg~ 89 (867)
--+.++|.++|.+-|+-.|| ++-. -.-|.+-.+..++++-- =|+......|.+++...++++|...+
T Consensus 639 lil~rEf~sPDeemkkivLK-Vv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~-- 715 (1172)
T KOG0213|consen 639 LILIREFGSPDEEMKKIVLK-VVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD-- 715 (1172)
T ss_pred HHHHHhhCCChHHHHHHHHH-HHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch--
Confidence 45788899999877766554 3332 23465544443333321 24556677889999999999887543
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHH----HHhhcCCc----hhhHHHHHHHHHHhcCCCChHHH--HHHHHHHHHhh
Q 002911 90 VLPEMILICQNLRNNLQHPNEYIRGVTL----RFLCRLNE----TEIIEPLIPSVLQNLQHRHPYIR--RNAILAVMAIY 159 (867)
Q Consensus 90 l~~EmiLv~NsL~KDL~~pNe~IRglAL----r~Ls~I~~----~el~e~L~~~V~~~L~d~~pyVR--K~A~lal~kI~ 159 (867)
-.++-+..||.|.+|-.|-++. |.+++++. ..+-+.++..|...+.+...-+- =+..-++.+-+
T Consensus 716 ------~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l 789 (1172)
T KOG0213|consen 716 ------PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL 789 (1172)
T ss_pred ------HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 3568888999999986665544 55555554 44556677777777766433332 22222222211
Q ss_pred ccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc-------hhhHHHHHHHHh-hhcCccchHHHHHHHHHHHH
Q 002911 160 KLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD-------QDRAINYLLTHV-DRVSEWGELLQMVVLELIRK 231 (867)
Q Consensus 160 ~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~-------~~~al~~L~~~l-~~i~~~~p~lQ~~iL~ll~~ 231 (867)
-.-..|. +|.+..-+...| +.+.+.|+..|..+...+. .+.-+.++-.+| ..+..-.|-..-.||..+..
T Consensus 790 g~r~kpy-lpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 790 GGRVKPY-LPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred hhccccc-hHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 1001122 233322233334 7788888888877665442 222244443333 22344444334445555544
Q ss_pred hhhc------CchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-ChH-----HHHHHHHHHHHHHccCCCHHHHHHH
Q 002911 232 VCRT------NKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APT-----AIRAAANTYSQLLLSQSDNNVKLIV 299 (867)
Q Consensus 232 ~~~~------~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~-----~lk~aa~~li~ll~~~sD~Nvk~iv 299 (867)
.+.. .| -...++..|.++|.+...-|.-.|+..+..+.. .|+ ..-.++--|+++|. .....+|-.+
T Consensus 868 I~nvigm~km~p-Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~iRRaa 945 (1172)
T KOG0213|consen 868 IVNVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKEIRRAA 945 (1172)
T ss_pred HHHhccccccCC-ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3321 12 235677888888888888888888888777642 222 12234555677774 4456788888
Q ss_pred HHHHHHHHhh-ChhhHHHHHHhheecccCCCHHHHH---HHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHH
Q 002911 300 LDRLNELRSS-HRDIMVDLIMDVLRALNSPNLDIRR---KTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYR 375 (867)
Q Consensus 300 L~~L~~L~~~-~p~~l~~~~~~il~~L~d~d~~IR~---kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r 375 (867)
...+.-|... .|+ +....++.-|...+..-|. -++.++..-|.+=+ |+..|+.++.. .+..++
T Consensus 946 ~nTfG~IakaIGPq---dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt---VLPalmneYrt-------Pe~nVQ 1012 (1172)
T KOG0213|consen 946 VNTFGYIAKAIGPQ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFT---VLPALMNEYRT-------PEANVQ 1012 (1172)
T ss_pred HhhhhHHHHhcCHH---HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchh---hhHHHHhhccC-------chhHHH
Confidence 8888877652 453 1122233334444433333 36666666666654 56777777542 245677
Q ss_pred HHHHHHHHHhHccCCccHHHHHHHHHH----HHcCCCcccHHHHHHHHHHHHHhCccc-HHHHHHHHHHHh-ccc--chH
Q 002911 376 QMLIQAIHSCAIKFPEVASTVVHLLMD----FLGDSNVASAIDVIIFVREIIEMNPKL-RVSIITRLLDNF-YQI--RAA 447 (867)
Q Consensus 376 ~~lI~aI~~la~kf~~~a~~~v~~Ll~----lL~~~~~~v~~evi~~l~~ii~~~p~l-r~~il~~L~~~L-~~i--~~~ 447 (867)
+-++++++-+-+...+.+..||..+.- .|.|....-++.+...++.+.-..|.+ .+.++-+|++.+ .+| .+|
T Consensus 1013 nGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1013 NGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred HhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCCh
Confidence 778888776655544555555555444 444555555566677777776554433 355666777755 333 244
Q ss_pred hHHHHHhhHhhccCCCCCcHHHHHHHHHHhhCCCCc
Q 002911 448 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPF 483 (867)
Q Consensus 448 ~v~~~alWiLGEY~~~~~~i~~~~~~i~~~l~~~p~ 483 (867)
.+..+. .++++-+|.++|.-++
T Consensus 1093 hviqa~--------------~e~~eg~r~~Lg~~~~ 1114 (1172)
T KOG0213|consen 1093 HVIQAF--------------DEAMEGLRVALGPQAM 1114 (1172)
T ss_pred HHHHHH--------------HHHHHHHHHHhchHHH
Confidence 444433 3455666666665544
No 67
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.25 Score=54.25 Aligned_cols=275 Identities=16% Similarity=0.262 Sum_probs=168.3
Q ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHhhccCCCc---ccccc--hHHHHHHHHccCCChhHHHHHHHHHHhcchhh--H
Q 002911 132 LIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGE---QLLVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--A 203 (867)
Q Consensus 132 L~~~V~~~L-~d~~pyVRK~A~lal~kI~~l~~~p---~li~d--~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~--a 203 (867)
++|..++.+ ++.+....=.|+.|+..|.. -.. ..+-| +.++.-++| .+++..|+-.|+-+|..|.-+. +
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaS--Gtt~QTkvVvd~~AVPlfiqlL-~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIAS--GTTQQTKVVVDAGAVPLFIQLL-SSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhcc--CcccceEEEEeCCchHHHHHHH-cCchHHHHHHHHHHhccccCCchhH
Confidence 456666666 66777778899999999977 222 12222 345555655 7888899999999999996543 2
Q ss_pred ---------HHHHHHHhhhcCccchHHHHHHH----HHHHHhhhc-Cc----hhHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002911 204 ---------INYLLTHVDRVSEWGELLQMVVL----ELIRKVCRT-NK----GEKGKYIKIIISLLNAPSTAVIYECAGT 265 (867)
Q Consensus 204 ---------l~~L~~~l~~i~~~~p~lQ~~iL----~ll~~~~~~-~p----~~~~~li~~L~~lL~s~s~aV~~eaa~t 265 (867)
++.+++++. +..+ .+.++ ..|..+||. +| +...+-++.|..++.+..+.|+..|.++
T Consensus 192 RD~vL~~galeplL~ll~---ss~~--~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WA 266 (526)
T COG5064 192 RDYVLQCGALEPLLGLLL---SSAI--HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA 266 (526)
T ss_pred HHHHHhcCchHHHHHHHH---hccc--hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 333444432 1111 12233 345567775 33 3567889999999999999999999999
Q ss_pred HHhcCCChH-HHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC---hhhHH--HHHHhheecccCCCHHHHH
Q 002911 266 LVSLSSAPT-AIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSH---RDIMV--DLIMDVLRALNSPNLDIRR 334 (867)
Q Consensus 266 L~~Ls~~p~-~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~---p~~l~--~~~~~il~~L~d~d~~IR~ 334 (867)
+.+++..|. .+++ +...++++| ++.+.+++--+|+.+..|..-. ..++- .....|..+|+++-..||+
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 999986553 3333 235688877 5677889999999998886521 12221 1223344458888889999
Q ss_pred HHHHHHhccCCCCcHHHHH--------HHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhH---ccCCcc-----HHHHHH
Q 002911 335 KTLDIVLELITPRNINEVV--------LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA---IKFPEV-----ASTVVH 398 (867)
Q Consensus 335 kaLelL~~Lv~~~Nv~~IV--------~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la---~kf~~~-----a~~~v~ 398 (867)
.+-=.+.++ +..|.+.+= .-|.+ +..+. +...|+++-=+|.... .+-|+. ..-+++
T Consensus 346 EaCWTiSNI-TAGnteqiqavid~nliPpLi~-lls~a------e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ik 417 (526)
T COG5064 346 EACWTISNI-TAGNTEQIQAVIDANLIPPLIH-LLSSA------EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK 417 (526)
T ss_pred hhheeeccc-ccCCHHHHHHHHhcccchHHHH-HHHHH------HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchh
Confidence 987777664 455655432 22222 22221 2345666666665543 233432 123445
Q ss_pred HHHHHHcCCCcccHHHHHHHHHHHH
Q 002911 399 LLMDFLGDSNVASAIDVIIFVREII 423 (867)
Q Consensus 399 ~Ll~lL~~~~~~v~~evi~~l~~ii 423 (867)
-|-++|....+.+.+-.+..++.++
T Consensus 418 pLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 418 PLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHHHHHhccCccchhhhHHHHHHHH
Confidence 5555665554444444445555554
No 68
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.99 E-value=0.34 Score=59.32 Aligned_cols=206 Identities=21% Similarity=0.317 Sum_probs=127.0
Q ss_pred chhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH--HHHHHHHHhcCCCCHHHHHHHHHHhhcCCc-hhhH
Q 002911 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI--LICQNLRNNLQHPNEYIRGVTLRFLCRLNE-TEII 129 (867)
Q Consensus 53 ~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi--Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~-~el~ 129 (867)
.++...++ ++.+++.++.-++.-++..++-+.++ |.+|. =++..|.|-+.++|+-.+-.|||.|.++.. +++-
T Consensus 290 ~iV~~Lv~-~Ldr~n~ellil~v~fLkkLSi~~EN---K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 290 GIVSLLVK-CLDRENEELLILAVTFLKKLSIFKEN---KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred CCHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHHH---HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 45556677 56788888888887888777655433 45552 367889999999999999999999999974 3332
Q ss_pred HH-----HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002911 130 EP-----LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 130 e~-----L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li-----~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
+. ++|.+...|.+++ .|-.|.-.++++.. +++.. .+..+.+-++|...+++.+...++.++..+.
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~---dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM---DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc---CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 22 5688888887653 44445444554444 22211 2333444444445556666555666655554
Q ss_pred hh--hHH-----HHHHHHhhh-cCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHH---HHcCC-ChHHHHHHHHHHH
Q 002911 200 QD--RAI-----NYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIIS---LLNAP-STAVIYECAGTLV 267 (867)
Q Consensus 200 ~~--~al-----~~L~~~l~~-i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~---lL~s~-s~aV~~eaa~tL~ 267 (867)
.+ .|- +.|..+++. +...+| .+++++|.++..++..+..+.+.+.+ ++.+. +.....||..+|.
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 32 220 112222222 223343 36788888887776666666655554 44443 5679999999999
Q ss_pred hcCC
Q 002911 268 SLSS 271 (867)
Q Consensus 268 ~Ls~ 271 (867)
+++.
T Consensus 517 NL~~ 520 (708)
T PF05804_consen 517 NLTI 520 (708)
T ss_pred hccc
Confidence 9864
No 69
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.98 E-value=0.13 Score=60.08 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=105.5
Q ss_pred HHHHHHhheecccCCCHHHHHHHHHHHhccCCC-CcH--HHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc--c
Q 002911 314 MVDLIMDVLRALNSPNLDIRRKTLDIVLELITP-RNI--NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI--K 388 (867)
Q Consensus 314 l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~-~Nv--~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~--k 388 (867)
+...+..++..|+++++.+|.+|+++...|+-- +|. ...+..|-.-|-.+.+ +..+|+---+++||+.+.. +
T Consensus 602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lg---e~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLG---EDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcC---cccHHHHHHHHHHHHHHhhhhc
Confidence 455677788999999999999999998865410 010 0111111111112222 4567888888999987763 4
Q ss_pred CC---ccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc---H--HHHHHHHHHHhcccchHhHHHHHhhHhhcc
Q 002911 389 FP---EVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL---R--VSIITRLLDNFYQIRAARVCTCALWIIGEY 460 (867)
Q Consensus 389 f~---~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l---r--~~il~~L~~~L~~i~~~~v~~~alWiLGEY 460 (867)
|. +-+..+++.|.-+|.+....+....|.++..|.-+.|+- | ..|.-.|++.|... ..+++|+|--.+|=.
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~-nKeiRR~A~~tfG~I 757 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW-NKEIRRNATETFGCI 757 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhhH
Confidence 43 345688999999999998888888899999998887764 2 24566666666553 356888888877754
Q ss_pred CCCCCcHHHHHHHHHHhh
Q 002911 461 CQSLSEVENGIATIKQCL 478 (867)
Q Consensus 461 ~~~~~~i~~~~~~i~~~l 478 (867)
+.-+ ..+++++.+-..+
T Consensus 758 s~ai-GPqdvL~~LlnnL 774 (975)
T COG5181 758 SRAI-GPQDVLDILLNNL 774 (975)
T ss_pred Hhhc-CHHHHHHHHHhcc
Confidence 4433 2455666554444
No 70
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.87 E-value=0.0039 Score=57.74 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=74.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCch------hhHH-HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-
Q 002911 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNET------EIIE-PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV- 169 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~~~------el~e-~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~- 169 (867)
++.+.+=|+++|+.+|-.|+.+|+++... .+++ ..+|.+.++|.++++.||+.|+.|+.++.. ..+....
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~ 86 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA--GPEDNKLI 86 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--CcHHHHHH
Confidence 45666667788899999999999998752 2333 567888889999999999999999999988 5543221
Q ss_pred ----chHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002911 170 ----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 170 ----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
...+.+.++| .+.|..++..|+.+|..+.
T Consensus 87 ~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhh
Confidence 2345555555 6778889999988887654
No 71
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.83 E-value=0.69 Score=59.37 Aligned_cols=346 Identities=14% Similarity=0.133 Sum_probs=189.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCc--hhhH--HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHH
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE--TEII--EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEM 174 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~--~el~--e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~l 174 (867)
+.|.-=|..|-.-+|.-|||+|+.|.+ |.++ +.+...|..-+.|.+.-||-.|+--+++..- -.|++++.+-+.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl--~~~e~~~qyY~~ 896 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL--SIPELIFQYYDQ 896 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--ccHHHHHHHHHH
Confidence 666666778889999999999999974 3332 3355667777889999999999999999877 788888887554
Q ss_pred HHHHHccCCChhHHHHHHHHHHhcchhhH----H-HHHHHHhhhc-----------------------------------
Q 002911 175 IEKVLSTEQDPSAKRNAFLMLFTCDQDRA----I-NYLLTHVDRV----------------------------------- 214 (867)
Q Consensus 175 l~~lL~~D~D~~v~~~A~~~L~ei~~~~a----l-~~L~~~l~~i----------------------------------- 214 (867)
|-.-+ .|+-.+|+..++..+.+++.+.+ + .-+.+++.++
T Consensus 897 i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~k 975 (1692)
T KOG1020|consen 897 IIERI-LDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARK 975 (1692)
T ss_pred HHhhc-CCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHh
Confidence 43333 57888899999999998875421 0 1111111111
Q ss_pred ------------CccchHHHHHHHHHHHHhhhc------Cch---hHHHHHHHHHHHHc-------------CCChHHHH
Q 002911 215 ------------SEWGELLQMVVLELIRKVCRT------NKG---EKGKYIKIIISLLN-------------APSTAVIY 260 (867)
Q Consensus 215 ------------~~~~p~lQ~~iL~ll~~~~~~------~p~---~~~~li~~L~~lL~-------------s~s~aV~~ 260 (867)
.....|.+.-+..++..+-.. .|- .....++++..+|. ..+..-.+
T Consensus 976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen 976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence 123344444333333332210 010 01111222222211 12334567
Q ss_pred HHHHHHHhcCCC-hHHHH----HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHh--hCh--hhHHHHHHhheecccCCCH
Q 002911 261 ECAGTLVSLSSA-PTAIR----AAANTYSQLLL-SQSDNNVKLIVLDRLNELRS--SHR--DIMVDLIMDVLRALNSPNL 330 (867)
Q Consensus 261 eaa~tL~~Ls~~-p~~lk----~aa~~li~ll~-~~sD~Nvk~ivL~~L~~L~~--~~p--~~l~~~~~~il~~L~d~d~ 330 (867)
++..+|..++.. |..+- ....+|+..-. +..+..+-|-++..+..... .+| .++...-.+++..+---..
T Consensus 1056 ~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~ 1135 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM 1135 (1692)
T ss_pred HHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch
Confidence 777777766542 32221 12234433211 11233344444444443322 122 1233222223333333344
Q ss_pred HHHHHHHHHHhccCCC--CcHHHHHHHHHHHHH---HhhcCCccC-CH---HHHHHHHHHHHHhHcc--CCc--------
Q 002911 331 DIRRKTLDIVLELITP--RNINEVVLMLKKEVV---KTQSGELEK-NG---EYRQMLIQAIHSCAIK--FPE-------- 391 (867)
Q Consensus 331 ~IR~kaLelL~~Lv~~--~Nv~~IV~~L~kel~---~~~~~~~d~-d~---e~r~~lI~aI~~la~k--f~~-------- 391 (867)
..-..+.-.+..+++. +|+.-+-..+..++. ....+..+. +. .--+.++.++|-++.- |+.
T Consensus 1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccc
Confidence 5556677778888885 776655444443332 211110011 11 2334456667777652 221
Q ss_pred ------cHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc--HHHHHHHHHHHhcccchH
Q 002911 392 ------VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL--RVSIITRLLDNFYQIRAA 447 (867)
Q Consensus 392 ------~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l--r~~il~~L~~~L~~i~~~ 447 (867)
..+.|+..|+-|.++....++..++..+..+.-++|.+ ++.+.+.+.+.|.+...+
T Consensus 1216 ~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~ 1279 (1692)
T KOG1020|consen 1216 LQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSD 1279 (1692)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhccc
Confidence 23577888888888888888888888888888888876 345555555566654443
No 72
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.82 E-value=0.16 Score=63.45 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=148.7
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc-------hhhH-
Q 002911 133 IPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD-------QDRA- 203 (867)
Q Consensus 133 ~~~V~~~L~d-~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~-------~~~a- 203 (867)
++-|-.|+.+ +.+.-|.+|+.-+..+-+.-.++..+..+.+.+-.++ .|+++.|+..|+..|+++- +.++
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 4444445544 3344455555444443331022223333344444443 6777777777777776652 2222
Q ss_pred --HHHHHHHhhhcCc--cchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHH-----HcCCChHHHHHHHHHHHhcCCC--
Q 002911 204 --INYLLTHVDRVSE--WGELLQMVVLELIRKVCRTNKGEKGKYIKIIISL-----LNAPSTAVIYECAGTLVSLSSA-- 272 (867)
Q Consensus 204 --l~~L~~~l~~i~~--~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~l-----L~s~s~aV~~eaa~tL~~Ls~~-- 272 (867)
.+||.-.++.+.. ......+..-.-|..++. .+.+|++.-..+ ++..++. +......+
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~----tA~rFle~~q~~~~~g~~n~~nse-------t~~~~~~~~~ 571 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK----TAYRFLELTQELRQAGMLNDPNSE-------TAPEQNYNTE 571 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHH----HHHHHHHHHHHHHhcccccCcccc-------cccccccchH
Confidence 3555544443321 222333333333333332 122333333321 2222221 11111111
Q ss_pred hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh-----hChhhHHHHHHhheecccCCCHHHHHHHHHHHh---ccC
Q 002911 273 PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS-----SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVL---ELI 344 (867)
Q Consensus 273 p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~-----~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~---~Lv 344 (867)
-.++...+...+.-|+.+++++||..-|+.|..|.. +.-+++=.|... .|+|.|+.+|-.-.+-+. -.+
T Consensus 572 ~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiT---fLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 572 LQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLIT---FLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHH---HhcCccHHHHHHHHhhccceEEEE
Confidence 122333444445555678889999999999888763 344555566544 479999999999888777 456
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc--CC-ccHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 002911 345 TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK--FP-EVASTVVHLLMDFLGDSNVASAIDVIIFVRE 421 (867)
Q Consensus 345 ~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k--f~-~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ 421 (867)
..+.+++.+.-|+.+ ... |..+.+-..++.+++.++.. +- +..-.+++...-+|...+..++..++.+|..
T Consensus 649 G~rs~seyllPLl~Q--~lt----D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 649 GWRSVSEYLLPLLQQ--GLT----DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred eeeeHHHHHHHHHHH--hcc----CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHH
Confidence 788888766655533 222 34456667777777766642 11 2234566666778999999999999999888
Q ss_pred HHHh
Q 002911 422 IIEM 425 (867)
Q Consensus 422 ii~~ 425 (867)
+.++
T Consensus 723 ~~~~ 726 (1431)
T KOG1240|consen 723 IARQ 726 (1431)
T ss_pred HHhh
Confidence 8775
No 73
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.01 Score=73.58 Aligned_cols=90 Identities=20% Similarity=0.291 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHhhcCC--chhhHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccC
Q 002911 106 QHPNEYIRGVTLRFLCRLN--ETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTE 182 (867)
Q Consensus 106 ~~pNe~IRglALr~Ls~I~--~~el~e~L~~~V~~~L~-d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D 182 (867)
.+.||.++..|-=+||++. +.+.++.=+|.+...++ +++|.||-|++.|++-+-- .+|.+++.|.+.++..| .|
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav--~fpnlie~~T~~Ly~rL-~D 1009 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV--RFPNLIEPWTEHLYRRL-RD 1009 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhh--hcccccchhhHHHHHHh-cC
Confidence 4667999999999999985 78888888999999997 8999999999999999888 89999999999998877 89
Q ss_pred CChhHHHHHHHHHHhc
Q 002911 183 QDPSAKRNAFLMLFTC 198 (867)
Q Consensus 183 ~D~~v~~~A~~~L~ei 198 (867)
.++.|+.+|+.+|.++
T Consensus 1010 ~~~~vRkta~lvlshL 1025 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHL 1025 (1251)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999987653
No 74
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.12 Score=55.05 Aligned_cols=269 Identities=17% Similarity=0.198 Sum_probs=158.9
Q ss_pred HHHHHHHhcCCCCHH--HHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHH
Q 002911 97 ICQNLRNNLQHPNEY--IRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEM 174 (867)
Q Consensus 97 v~NsL~KDL~~pNe~--IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~l 174 (867)
.+++|.+-|.++... -|=.||=.|-.+..+.. +..|.++..+.+.-.+-.++.++++... .+-+ +-+
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~----i~~i~ka~~d~s~llkhe~ay~LgQ~~~----~~Av---~~l 72 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAA----IKAITKAFIDDSALLKHELAYVLGQMQD----EDAV---PVL 72 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHH----HHHHHHhcccchhhhccchhhhhhhhcc----chhh---HHH
Confidence 346666666553211 12234433434444333 6677788888888888888888887744 2222 234
Q ss_pred HHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhh-cCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcC
Q 002911 175 IEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNA 253 (867)
Q Consensus 175 l~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~-i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s 253 (867)
+..++..++.|.|+-.|-.+|..+.....++++.+..++ +..-.|-.+..+-++=.+-. +....+
T Consensus 73 ~~vl~desq~pmvRhEAaealga~~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~-------------~~~~~~- 138 (289)
T KOG0567|consen 73 VEVLLDESQEPMVRHEAAEALGAIGDPESLEILTKYIKDPCKEVRETCELAIKRLEWKDI-------------IDKIAN- 138 (289)
T ss_pred HHHhcccccchHHHHHHHHHHHhhcchhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc-------------cccccc-
Confidence 444445678888888888888888744445666555522 11222222333322211100 000000
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHH
Q 002911 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNV-KLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDI 332 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nv-k~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~I 332 (867)
+ ..+.+..|.|.+-..-+..+-..++..+.++. ||.++=+|..+.. ++-+..|...+.++..-.
T Consensus 139 ~---------~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~------EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 139 S---------SPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT------EEAINALIDGLADDSALF 203 (289)
T ss_pred c---------CccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc------HHHHHHHHHhcccchHHH
Confidence 0 01112222222111111122223334444444 7777666665532 233445667788888999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccH
Q 002911 333 RRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASA 412 (867)
Q Consensus 333 R~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~ 412 (867)
|..+--++..|-++..+..+.+.|..+ ...+-+|.++..++|.+|. +.++++|.++++|..+.++
T Consensus 204 rhEvAfVfGQl~s~~ai~~L~k~L~d~---------~E~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~ 268 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSPAAIPSLIKVLLDE---------TEHPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVR 268 (289)
T ss_pred HHHHHHHHhhccchhhhHHHHHHHHhh---------hcchHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHH
Confidence 999999999999999998877776543 1357899999999999985 4899999999999987777
Q ss_pred HHHHHHHH
Q 002911 413 IDVIIFVR 420 (867)
Q Consensus 413 ~evi~~l~ 420 (867)
..+...+-
T Consensus 269 esc~vald 276 (289)
T KOG0567|consen 269 ESCEVALD 276 (289)
T ss_pred HHHHHHHH
Confidence 77665554
No 75
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.68 E-value=0.043 Score=59.18 Aligned_cols=173 Identities=19% Similarity=0.236 Sum_probs=114.1
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHhhCh---hhHHH--HHHhheecccCCCHHHHHHHHHHHhccCCCC-cHHHHHH
Q 002911 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHR---DIMVD--LIMDVLRALNSPNLDIRRKTLDIVLELITPR-NINEVVL 354 (867)
Q Consensus 281 ~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p---~~l~~--~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~-Nv~~IV~ 354 (867)
++++.+|-...||.++-.++-.+..... +| +++.+ -+.-+...|++|++.+|.+|+..+..+.... |...| +
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I-k 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI-K 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH-H
Confidence 4555666556677777777777766543 22 22221 1333566789999999999999999887544 54433 3
Q ss_pred HHHHHHHH-hhcCCccCCHHHHHHHHHHHHHhHcc--CCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHH
Q 002911 355 MLKKEVVK-TQSGELEKNGEYRQMLIQAIHSCAIK--FPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRV 431 (867)
Q Consensus 355 ~L~kel~~-~~~~~~d~d~e~r~~lI~aI~~la~k--f~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~ 431 (867)
....++.+ .... ..+.+++...++.+..++.. |-.....++.-++.+|..++......++..+..+. .+|....
T Consensus 93 ~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS-~np~~~~ 169 (254)
T PF04826_consen 93 MYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS-ENPDMTR 169 (254)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc-cCHHHHH
Confidence 33333322 1111 34678999999999998764 33445578888999999988877778888877776 4555433
Q ss_pred -----HHHHHHHHHhcccchHhHHHHHhhHhh
Q 002911 432 -----SIITRLLDNFYQIRAARVCTCALWIIG 458 (867)
Q Consensus 432 -----~il~~L~~~L~~i~~~~v~~~alWiLG 458 (867)
+++..++..|+.-...++...++|+.+
T Consensus 170 ~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 170 ELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred HHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 345677777776556677777777765
No 76
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=2.4 Score=50.24 Aligned_cols=317 Identities=16% Similarity=0.154 Sum_probs=194.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-ccccc
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVD 170 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~---~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~d 170 (867)
+-++--+..-+.-|.+++|-.-..+|..+.. ..-.+.+.+.+.++++....-=|+.|+.++..+.+ ... ....+
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~ 172 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKE 172 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhh
Confidence 4566778888899999999888777766542 22234456677888888888899999999998887 332 11111
Q ss_pred --hHHHHHHHHccCCChhHHHH-HHH---HHH-hcchhh---HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCch--
Q 002911 171 --APEMIEKVLSTEQDPSAKRN-AFL---MLF-TCDQDR---AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG-- 238 (867)
Q Consensus 171 --~~~ll~~lL~~D~D~~v~~~-A~~---~L~-ei~~~~---al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~-- 238 (867)
+.+-+.+++ .|....-.+. +.. +++ .+.+.. -++++..++..+++..+-.+....+..+...+.-+.
T Consensus 173 ~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a 251 (569)
T KOG1242|consen 173 FGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA 251 (569)
T ss_pred hhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch
Confidence 334455555 5655555442 222 222 122221 145666777766666776666666665554433222
Q ss_pred hHHHHHHHHHHHHcC--CChHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh--hChh
Q 002911 239 EKGKYIKIIISLLNA--PSTAVIYECAGTLVSLSSAP--TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS--SHRD 312 (867)
Q Consensus 239 ~~~~li~~L~~lL~s--~s~aV~~eaa~tL~~Ls~~p--~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~--~~p~ 312 (867)
.+..+...|..+... .+.....|...++....+.. ..+..++..+.+.| .++.+.||-.+...|.++.. .+|+
T Consensus 252 VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl-~DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 252 VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL-WDTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH-ccCCHHHHHHHHHHHHHHHHhhccHH
Confidence 233333445555555 34555666666666665421 12334555556655 68899999999999998876 3665
Q ss_pred hHHHHHHhheecccCCCHHHHHHHHHHHh-----ccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc
Q 002911 313 IMVDLIMDVLRALNSPNLDIRRKTLDIVL-----ELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI 387 (867)
Q Consensus 313 ~l~~~~~~il~~L~d~d~~IR~kaLelL~-----~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~ 387 (867)
++++++.++.|+.||..++.. +++.|+ .-+++-....++..|.+-+. +.+.+.++..+.-++.++.
T Consensus 331 -I~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~l~-------eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 331 -IQKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLALMVPILKRGLA-------ERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred -HHHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHHHHHHHHHHHh-------hccchhhhhHHHHHHHHHH
Confidence 789999999999998855544 333333 35577788888887776554 3466788999999998876
Q ss_pred cC--CccHHHHHHHHHH----HHcCCCcccHHHHHHHHHHHHH
Q 002911 388 KF--PEVASTVVHLLMD----FLGDSNVASAIDVIIFVREIIE 424 (867)
Q Consensus 388 kf--~~~a~~~v~~Ll~----lL~~~~~~v~~evi~~l~~ii~ 424 (867)
-. |.+...+++.|+. .+.+.-+.++..+...+..+++
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 54 4444444444443 3333434445444444444443
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.15 Score=56.39 Aligned_cols=319 Identities=15% Similarity=0.149 Sum_probs=196.5
Q ss_pred HHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHH-------H
Q 002911 59 VRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIE-------P 131 (867)
Q Consensus 59 Ik~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e-------~ 131 (867)
|.++++|.++.+...+--.+..++-..++.-+--+ ++--..+......++-.+|+.|..++.++.+-+-.. .
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~-l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGa 168 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVS-LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGA 168 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEe-ccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccc
Confidence 44567888888888887777765544333211111 233345777788888889999999999887543222 2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhccC-CCcccccc-hHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHH----
Q 002911 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLP-QGEQLLVD-APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAIN---- 205 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~-~~p~li~d-~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~---- 205 (867)
|.| +.++-+.++-.|||+|.-++..+-..- .-..++.. ..+.+-.+| ...|+.|+.-+..++..|.-++.-+
T Consensus 169 L~p-ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 169 LEP-LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred hhh-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 444 344778899999999987776654400 22234332 234555554 8899999999999999887554321
Q ss_pred -----HHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH----HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCh--H
Q 002911 206 -----YLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK----GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAP--T 274 (867)
Q Consensus 206 -----~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~----~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p--~ 274 (867)
....+.+-+.+.++-.|+..=-.++.++......+ .--+..+.++|+++.-..+.+.+-++-+++-+| +
T Consensus 247 qaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 247 QAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred hcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 11122222345667777766666666654332221 112467788888887777778777885554332 1
Q ss_pred H-H--HHHHHHHHHHHccCCCHH-HHHHHHHHHHHHHhh---ChhhHH--HHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002911 275 A-I--RAAANTYSQLLLSQSDNN-VKLIVLDRLNELRSS---HRDIMV--DLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 275 ~-l--k~aa~~li~ll~~~sD~N-vk~ivL~~L~~L~~~---~p~~l~--~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
. + .....+++++| .-.|++ +++-+.+.|..+... +..++- .-+..+...+-|.+.+++.+.-.-+..|+=
T Consensus 327 ~lI~dagfl~pLVrlL-~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 327 VLIADAGFLRPLVRLL-RAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred cceecccchhHHHHHH-hcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 1 1 12346788887 456766 999999999998763 223332 123334445678888998886666666655
Q ss_pred CCcHHHHH------HHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc
Q 002911 346 PRNINEVV------LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (867)
Q Consensus 346 ~~Nv~~IV------~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k 388 (867)
.+|-++-+ +.|. ... .+.+.|+|-.+..+++.++.+
T Consensus 406 ~d~~k~~lld~gi~~iLI----p~t---~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 406 NDNDKEALLDSGIIPILI----PWT---GSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccccHHHHhhcCCcceee----ccc---CccchhhcccHHHHHHhhhhh
Confidence 55544311 1111 111 145678999999999888754
No 78
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.71 Score=59.65 Aligned_cols=373 Identities=14% Similarity=0.146 Sum_probs=210.3
Q ss_pred CCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCC---------chhhHHHHH
Q 002911 65 SEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNN--LQHPNEYIRGVTLRFLCRLN---------ETEIIEPLI 133 (867)
Q Consensus 65 S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KD--L~~pNe~IRglALr~Ls~I~---------~~el~e~L~ 133 (867)
+++-.+|||==++ ..++.++.|+..+....-.--+|.+| |+|+|--||.+..-|++.|- +...+..+.
T Consensus 18 s~~ell~rLk~l~-~~l~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf 96 (1266)
T KOG1525|consen 18 SKDELLKRLKKLA-NCLASLDQDNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIF 96 (1266)
T ss_pred cHHHHHHHHHHHH-HHHhhcccCchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 3444455554443 33445666664434444444555554 48999999999999988763 111233332
Q ss_pred HHHH---HhcCC-CChHHHHHHHH----HHHHh---hccCCCcccccchHHHHHHHHccCCChhHHHHHH----HHHHhc
Q 002911 134 PSVL---QNLQH-RHPYIRRNAIL----AVMAI---YKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAF----LMLFTC 198 (867)
Q Consensus 134 ~~V~---~~L~d-~~pyVRK~A~l----al~kI---~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~----~~L~ei 198 (867)
..+. ..|.| .+||-.|.+.+ +-+++ +.++.+.+++++...++..++ .++.+--+-+-. .++.+.
T Consensus 97 ~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~-~~~~~~~v~~~~~i~~~li~e~ 175 (1266)
T KOG1525|consen 97 QLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLA-RKGHPKKVFNMLDIAIMLITEE 175 (1266)
T ss_pred HHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhh
Confidence 2222 34445 68888887762 33331 112223344444444444433 333332222211 111111
Q ss_pred c--hhhHHHHHHH----------------------------------Hhhh----cCccchHHHHHHHHHHHHhhhcCch
Q 002911 199 D--QDRAINYLLT----------------------------------HVDR----VSEWGELLQMVVLELIRKVCRTNKG 238 (867)
Q Consensus 199 ~--~~~al~~L~~----------------------------------~l~~----i~~~~p~lQ~~iL~ll~~~~~~~p~ 238 (867)
+ +...++.|.. .+.+ -....--++...-+++.++.+..|.
T Consensus 176 d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ 255 (1266)
T KOG1525|consen 176 DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ 255 (1266)
T ss_pred ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH
Confidence 1 1111111110 1100 0001111245555666666556666
Q ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhh
Q 002911 239 EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-----IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI 313 (867)
Q Consensus 239 ~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~-----lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~ 313 (867)
...-.+..|..-|.+.+..++.+|..++..+-..+.. -...-.++++.+ .+.+.+||...++........+|..
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~-~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF-NDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-ccCChhhhhhHHHHhHHHHhcCchh
Confidence 6677777788888889999999999999887544321 122345677776 4677899999999999988888887
Q ss_pred HHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc-C---
Q 002911 314 MVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK-F--- 389 (867)
Q Consensus 314 l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k-f--- 389 (867)
......-..-+..+.|+.+|.+..-++....-..-.-.++..|++.+..-.. |+-..+|..+++.+.++-.+ |
T Consensus 335 ~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~r---DKk~~VR~~Am~~LaqlYk~~~~~~ 411 (1266)
T KOG1525|consen 335 AKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLR---DKKIKVRKQAMNGLAQLYKNVYCLR 411 (1266)
T ss_pred hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6654333322445667777777655544432222222222225555544333 67889999999999887765 2
Q ss_pred -------CccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcc
Q 002911 390 -------PEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQ 443 (867)
Q Consensus 390 -------~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~ 443 (867)
.+..+|+-+-|+.++...+.....-+-..+.+.+.-+|---+.-+.+|+..|..
T Consensus 412 ~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 412 SAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred ccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Confidence 234579999999999888655553334566666665554445567777776643
No 79
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.36 E-value=1.8 Score=55.77 Aligned_cols=122 Identities=16% Similarity=0.296 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc--cchHHHHHHHHccCCChhHHHHHHHHHHh---cchhhH
Q 002911 129 IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL--VDAPEMIEKVLSTEQDPSAKRNAFLMLFT---CDQDRA 203 (867)
Q Consensus 129 ~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li--~d~~~ll~~lL~~D~D~~v~~~A~~~L~e---i~~~~a 203 (867)
..+.+.-|...|..+.+.||-+|.-|+..|.. .+|.+. |+...-+..-+ .|+..+|+-+|+.++.. ..|+..
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive--~Dp~vL~~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVE--ADPSVLSRPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh--cChHhhcCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhccHHHH
Confidence 34556666777788999999999999999999 788765 34444455444 79999999999998884 346666
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCC
Q 002911 204 INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAP 254 (867)
Q Consensus 204 l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~ 254 (867)
.+|.-.+...+.+.+--..-.+++.++..|-..|.. ..+.+.+..+|...
T Consensus 891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf-~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF-SKIVDMCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHh
Confidence 677777777788888888889999999999877653 33445555555443
No 80
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.31 E-value=0.011 Score=47.93 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCC--c----hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002911 110 EYIRGVTLRFLCRLN--E----TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAI 158 (867)
Q Consensus 110 e~IRglALr~Ls~I~--~----~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI 158 (867)
|.+|..|+.+||.+. . ....+.++|.+.++|.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568999999999775 2 334556788888889999999999999999865
No 81
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.30 E-value=2.4 Score=52.49 Aligned_cols=349 Identities=14% Similarity=0.126 Sum_probs=187.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC---C-chhHHHHHhhcCCCCcchHHHHHHH----HHHHhhcCCCCCCCchHHHHHHHH
Q 002911 30 DVPAKVDAMKKAIMLLLNGETL---P-QLFITIVRYVLPSEDHTIQKLLLLY----LEIIDKTDAKGRVLPEMILICQNL 101 (867)
Q Consensus 30 ~~~~K~~alkklI~l~~~G~d~---s-~l~~~VIk~v~~S~d~~lKkL~Yly----l~~~~~~d~dg~l~~EmiLv~NsL 101 (867)
.+..+..|+..+..++-.+.+. - .++...++ .... ..-+.-|+. ++.+....+++ -+++ .+..+
T Consensus 289 qdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~-~~~d---~~~~v~~~~~~~~~~L~~~~~~~~-~~~~---~~~~~ 360 (759)
T KOG0211|consen 289 QDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ-AVED---GSWRVSYMVADKFSELSSAVGPSA-TRTQ---LVPPV 360 (759)
T ss_pred hhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH-HhcC---hhHHHHHHHhhhhhhHHHHhcccc-Cccc---chhhH
Confidence 3566777888777776666544 2 23333333 2222 223344443 34443344421 1223 23444
Q ss_pred HHhcCCCCHHHHHHHHHHhhcC---Cc----hhhH-HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHH
Q 002911 102 RNNLQHPNEYIRGVTLRFLCRL---NE----TEII-EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (867)
Q Consensus 102 ~KDL~~pNe~IRglALr~Ls~I---~~----~el~-e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ 173 (867)
..-+.+.-.-.|+.+-+-..++ .. +++. ..++|.++.+..+.++.||...+.-+.-.-.+--.+..++...+
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLP 440 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccCh
Confidence 4444555555555544333322 22 3333 34569999999999999999887655543221012233443334
Q ss_pred HHHHHHccCCChhHHHHHHH---HHHhcchhhHHHHHH-HHhhhcCccc---hH-HHHHHHHHHHHhhhcCch--hHHHH
Q 002911 174 MIEKVLSTEQDPSAKRNAFL---MLFTCDQDRAINYLL-THVDRVSEWG---EL-LQMVVLELIRKVCRTNKG--EKGKY 243 (867)
Q Consensus 174 ll~~lL~~D~D~~v~~~A~~---~L~ei~~~~al~~L~-~~l~~i~~~~---p~-lQ~~iL~ll~~~~~~~p~--~~~~l 243 (867)
+....+ +|.++.|+.|-+. .+.++.....+..+. ..+..+.... .| ...++++.+-..+...-. ...++
T Consensus 441 ~~~~~l-~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~ 519 (759)
T KOG0211|consen 441 LLIGNL-KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKL 519 (759)
T ss_pred hhhhhc-chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHH
Confidence 443433 8999999999984 333333322222221 1222222233 33 345666666665543211 12345
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC--hhhHHHHH
Q 002911 244 IKIIISLLNAPSTAVIYECAGTLVSLSS---APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH--RDIMVDLI 318 (867)
Q Consensus 244 i~~L~~lL~s~s~aV~~eaa~tL~~Ls~---~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~--p~~l~~~~ 318 (867)
-..+...+.+.-.+++-.|+..+..+.. ..-........++..... ..--.|...+..+..+.... +-..+...
T Consensus 520 ~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q-~~y~~R~t~l~si~~la~v~g~ei~~~~Ll 598 (759)
T KOG0211|consen 520 AELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQ-DNYLVRMTTLFSIHELAEVLGQEITCEDLL 598 (759)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcC-cccchhhHHHHHHHHHHHHhccHHHHHHHh
Confidence 5666666666667788888887765421 122333444444444322 22456889999999887642 33334455
Q ss_pred HhheecccCCCHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc
Q 002911 319 MDVLRALNSPNLDIRRKTLDIVLELI---TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV 392 (867)
Q Consensus 319 ~~il~~L~d~d~~IR~kaLelL~~Lv---~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~ 392 (867)
..+.+...|+.+.||-.++..+..+. ...-.+..|..+...|.+. .+.|..|+.....+...++..+...
T Consensus 599 p~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d----~~~dvr~~a~~a~~~i~l~~~~~~~ 671 (759)
T KOG0211|consen 599 PVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSD----QELDVRYRAILAFGSIELSRLESSL 671 (759)
T ss_pred HHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccC----cccchhHHHHHHHHHHHHHHHhhhH
Confidence 56667788999999999988877544 4555555555444444331 1445556655555555555565543
No 82
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.29 E-value=0.33 Score=57.63 Aligned_cols=215 Identities=17% Similarity=0.226 Sum_probs=108.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhh
Q 002911 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVD 212 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~ 212 (867)
+..|..... .++-+++-|+-=|.|.|+ .+|++-+++.+-+..+ ..|.|..|+.+|+..|-.++.+.
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk--~FP~l~~~Ai~a~~DL-cEDed~~iR~~aik~lp~~ck~~---------- 90 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFK--HFPDLQEEAINAQLDL-CEDEDVQIRKQAIKGLPQLCKDN---------- 90 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHC--C-GGGHHHHHHHHHHH-HT-SSHHHHHHHHHHGGGG--T-----------
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHH-HhcccHHHHHHHHHhHHHHHHhH----------
Confidence 344454544 578899999999999999 9999998888877775 48899999988888776666542
Q ss_pred hcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-
Q 002911 213 RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTA---VIYECAGTLVSLSSAPTAIRAAANTYSQLLL- 288 (867)
Q Consensus 213 ~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~a---V~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~- 288 (867)
|+...++.++|.++|++..+. ++-.+...|+.+. | +.....++..+.
T Consensus 91 ------------------------~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d--~---k~tL~~lf~~i~~ 141 (556)
T PF05918_consen 91 ------------------------PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD--P---KGTLTGLFSQIES 141 (556)
T ss_dssp -------------------------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHH-
T ss_pred ------------------------HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC--c---HHHHHHHHHHHHh
Confidence 233334455666666665543 2333333333332 2 112222233332
Q ss_pred -cCCCHHHHHHHHHHHHH-HHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHHHh
Q 002911 289 -SQSDNNVKLIVLDRLNE-LRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI---TPRNINEVVLMLKKEVVKT 363 (867)
Q Consensus 289 -~~sD~Nvk~ivL~~L~~-L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv---~~~Nv~~IV~~L~kel~~~ 363 (867)
.++|..+|--+|.-|.. +....++++. |..++.+-.++.+.++. +..-.+.++..| +.+.-|
T Consensus 142 ~~~~de~~Re~~lkFl~~kl~~l~~~~~~------------p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL-~~lk~~ 208 (556)
T PF05918_consen 142 SKSGDEQVRERALKFLREKLKPLKPELLT------------PQKEMEEFIVDEIKKVLQDVTAEEFELFMSLL-KSLKIY 208 (556)
T ss_dssp --HS-HHHHHHHHHHHHHHGGGS-TTTS---------------HHHHHHHHHHHHHHCTT--HHHHHHHHHHH-HTSGG-
T ss_pred cccCchHHHHHHHHHHHHHHhhCcHHHhh------------chHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HhCccc
Confidence 24566666665554432 2222222221 22223232333222222 333333333222 233322
Q ss_pred hcCCccCCHHHHHHHHHHHHHhHc---cCCccHHHHHHHHHHHHcC
Q 002911 364 QSGELEKNGEYRQMLIQAIHSCAI---KFPEVASTVVHLLMDFLGD 406 (867)
Q Consensus 364 ~~~~~d~d~e~r~~lI~aI~~la~---kf~~~a~~~v~~Ll~lL~~ 406 (867)
.. -...+-++.++.-|..-+. .|+..-...|+-++.++..
T Consensus 209 ~~---~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~ 251 (556)
T PF05918_consen 209 GG---KQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQ 251 (556)
T ss_dssp -----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHH
T ss_pred cc---cCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHH
Confidence 11 1246788888888887663 4666666788888877664
No 83
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.24 E-value=0.29 Score=59.53 Aligned_cols=200 Identities=17% Similarity=0.216 Sum_probs=114.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcC---CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccC--C------
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRL---NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLP--Q------ 163 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I---~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~--~------ 163 (867)
.++.+.|.+.=-++.+.. .+|..|... .++++++.+.+-++.--..+++++|..|+++++.+...- .
T Consensus 398 ~~i~~~I~~~~~~~~ea~--~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~ 475 (618)
T PF01347_consen 398 KFIKDLIKSKKLTDDEAA--QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF 475 (618)
T ss_dssp HHHHHHHHTT-S-HHHHH--HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHcCCCCHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence 444555555322233333 334343333 355555555444433333478999999999988865510 1
Q ss_pred ----CcccccchHHHHHHHHc---cCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcC
Q 002911 164 ----GEQLLVDAPEMIEKVLS---TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN 236 (867)
Q Consensus 164 ----~p~li~d~~~ll~~lL~---~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~ 236 (867)
.....+.+.+.+...|. ...|...+..++.+|..+.....++.|...+..-.......+..++..++++....
T Consensus 476 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 476 CDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp -----SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 12223334344433332 56777888899999999987777888877665433556778999999999886655
Q ss_pred chhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 002911 237 KGEKGKYIKIIISLLNAP--STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRL 303 (867)
Q Consensus 237 p~~~~~li~~L~~lL~s~--s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L 303 (867)
|+ ...+.+.+++.+. .+.|+..|...|+...|.+..++.++ ..+..++++.|.-.+...|
T Consensus 556 ~~---~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~----~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 556 PE---KVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIA----QSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HH---HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHH----HHHTT-S-HHHHHHHHHHH
T ss_pred cH---HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHH----HHHhhCchHHHHHHHHHhc
Confidence 54 4455666665553 45699999999999877666555554 4455777788876666554
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.15 E-value=0.014 Score=53.61 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=51.5
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchH---HHHHHHHccCCChhHHHHHH
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP---EMIEKVLSTEQDPSAKRNAF 192 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~---~ll~~lL~~D~D~~v~~~A~ 192 (867)
..+-++.++|+|.+|++|+++-||..|+.|++.|.+. ..++.++.+. +.+-++ ..|+|+.|+.+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFNEIFDALCKL-SADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HcCCchhHHHHHH
Confidence 5677888999999999999999999999999999983 3334444333 444554 4899999987774
No 85
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.71 Score=56.16 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=70.2
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHhhcC---Cchh-----hHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhccCCCcccc
Q 002911 99 QNLRNNLQHP-NEYIRGVTLRFLCRL---NETE-----IIEPLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 99 NsL~KDL~~p-Ne~IRglALr~Ls~I---~~~e-----l~e~L~~~V~~~L~d~-~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
+.|..-|+.. +|+..--||.-||.+ ++++ .++.++|.+..+|.|. ++-+--.|+-|++.++. ..|.-.
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e--vlP~S~ 247 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE--VLPRSS 247 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--hccchh
Confidence 6666667655 899999999999875 3444 3567999999999995 78899999999999998 666433
Q ss_pred c---c---hHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002911 169 V---D---APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 169 ~---d---~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
. + +|=++++++ .=+=..|.-.++.+|..|.++
T Consensus 248 a~vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISRR 285 (1051)
T ss_pred heeecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHhh
Confidence 1 1 244556654 222344566667777766654
No 86
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.11 E-value=0.0071 Score=43.30 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
++|.+.++++|+++.||..|+.|++.|.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999876
No 87
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.98 E-value=0.14 Score=53.84 Aligned_cols=169 Identities=13% Similarity=0.136 Sum_probs=104.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhC-----hhhHHHHH----HhheecccCCCHHHHHHHHHHHhccCC--CCcHHHHHHHH
Q 002911 288 LSQSDNNVKLIVLDRLNELRSSH-----RDIMVDLI----MDVLRALNSPNLDIRRKTLDIVLELIT--PRNINEVVLML 356 (867)
Q Consensus 288 ~~~sD~Nvk~ivL~~L~~L~~~~-----p~~l~~~~----~~il~~L~d~d~~IR~kaLelL~~Lv~--~~Nv~~IV~~L 356 (867)
.++.|++.|.-+|..|..+...+ +..+.+++ .-+..+++|....|.+.|+.++..++. ...++..+..+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 46789999999999999988766 33333333 345567888888899999998887663 33466666666
Q ss_pred HHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCc---c-cH--
Q 002911 357 KKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNP---K-LR-- 430 (867)
Q Consensus 357 ~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p---~-lr-- 430 (867)
...|.+-.. +...-++..+..+|..++...+....-++..+...+.+.++.++..++.++..+++..| . +.
T Consensus 96 l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 96 LPPLLKKLG---DSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHc---cccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 655555433 34678999999999999987662223337788888888999999999999999999877 1 11
Q ss_pred ---HHHHHHHHHHhcccchHhHHHHHhhHhhcc
Q 002911 431 ---VSIITRLLDNFYQIRAARVCTCALWIIGEY 460 (867)
Q Consensus 431 ---~~il~~L~~~L~~i~~~~v~~~alWiLGEY 460 (867)
..+++.+...+.| ..++++..+--++..|
T Consensus 173 ~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSD-ADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
Confidence 2355555555555 4566666555444444
No 88
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=1.8 Score=54.14 Aligned_cols=331 Identities=15% Similarity=0.141 Sum_probs=174.1
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-ccccchH-HHHHHHHccCCChhHHHHHHHHHHhcchh-
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAP-EMIEKVLSTEQDPSAKRNAFLMLFTCDQD- 201 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~d~~-~ll~~lL~~D~D~~v~~~A~~~L~ei~~~- 201 (867)
.|+++|-++..+.+.|.|.+..||..|+-.++|+.. ..| +|..+.. ..++ ++.--.+++.--.|+.+|.|+...
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~--rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS--RLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc--cCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999 555 3443333 3333 332122356666888888886532
Q ss_pred -----hH---HHHHHHHhh--h-c--CccchHH---HHHHHHHHHHhhhcCchhHHHHHHHHHH-----HHcCCChHHHH
Q 002911 202 -----RA---INYLLTHVD--R-V--SEWGELL---QMVVLELIRKVCRTNKGEKGKYIKIIIS-----LLNAPSTAVIY 260 (867)
Q Consensus 202 -----~a---l~~L~~~l~--~-i--~~~~p~l---Q~~iL~ll~~~~~~~p~~~~~li~~L~~-----lL~s~s~aV~~ 260 (867)
.. ++.+..-+. . . .+.+.-. -+.++..+.+-. +|...+.++..|.. .+-...-.+++
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray--s~~~l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY--SPSDLKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC--ChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 21 222222111 0 0 0011111 123333333311 23333334332222 22233445666
Q ss_pred HHHHHHHhc----CCChH-----------HH-----------------HHHHHHHHHHHcc----CCCHHHHHHHHHHHH
Q 002911 261 ECAGTLVSL----SSAPT-----------AI-----------------RAAANTYSQLLLS----QSDNNVKLIVLDRLN 304 (867)
Q Consensus 261 eaa~tL~~L----s~~p~-----------~l-----------------k~aa~~li~ll~~----~sD~Nvk~ivL~~L~ 304 (867)
.|+-++... ++.|. ++ .....++++-++. +=|..+|..+-..|.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 666655432 11110 00 0112234443333 347889999999999
Q ss_pred HHHhhChhhHHH-HHHhheecccCCCHHHHHHHH----HHHhc---cC--CCCcHHHHHHHHHHHHHHhhcCCcc--CCH
Q 002911 305 ELRSSHRDIMVD-LIMDVLRALNSPNLDIRRKTL----DIVLE---LI--TPRNINEVVLMLKKEVVKTQSGELE--KNG 372 (867)
Q Consensus 305 ~L~~~~p~~l~~-~~~~il~~L~d~d~~IR~kaL----elL~~---Lv--~~~Nv~~IV~~L~kel~~~~~~~~d--~d~ 372 (867)
+|....|+.+.+ +.+.++.+....|...|--.. ++++. +. ...-.+..|..+...+....+.-+. ...
T Consensus 570 ~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~ 649 (1133)
T KOG1943|consen 570 KLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGT 649 (1133)
T ss_pred HHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHH
Confidence 999899988874 566677777777776664322 22221 11 1111122222221111110000000 113
Q ss_pred HHHHHHHHHHHHhHccCCc-----cHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh----CcccHHHHHHHHHHHhcc
Q 002911 373 EYRQMLIQAIHSCAIKFPE-----VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM----NPKLRVSIITRLLDNFYQ 443 (867)
Q Consensus 373 e~r~~lI~aI~~la~kf~~-----~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~----~p~lr~~il~~L~~~L~~ 443 (867)
-+|+...+.|..+...-+. +.+..-.++.+.+...+ .+.++++..+.+++.. ++..-..++.+.+..+.+
T Consensus 650 lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~ 728 (1133)
T KOG1943|consen 650 LMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTK 728 (1133)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcC
Confidence 4555555555555432221 12223344555555554 6667777777777663 333333477888888877
Q ss_pred cchHhHHHHHhhHhhccC
Q 002911 444 IRAARVCTCALWIIGEYC 461 (867)
Q Consensus 444 i~~~~v~~~alWiLGEY~ 461 (867)
..+..++++..-++|--+
T Consensus 729 ~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 729 CSEERIRRGLILALGVLP 746 (1133)
T ss_pred chHHHHHHHHHHHHccCc
Confidence 777788888888888654
No 89
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=7.5 Score=49.41 Aligned_cols=221 Identities=17% Similarity=0.194 Sum_probs=140.3
Q ss_pred cchHHHHHHHHHHHHhhhcCch-hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH-------HHHHHHHHHHHHc
Q 002911 217 WGELLQMVVLELIRKVCRTNKG-EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-------IRAAANTYSQLLL 288 (867)
Q Consensus 217 ~~p~lQ~~iL~ll~~~~~~~p~-~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~-------lk~aa~~li~ll~ 288 (867)
-.++.+..+|.++...++.-++ ....+........+++++.|...+-+.|..+.+.|+. +..+-+.+.+-+
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~- 706 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF- 706 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-
Confidence 4567788888888877765332 3344443444444555788998888888888765432 111222222222
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCh----hhHHHHHHhheecccCCCHHHHHHHHHHHhccC---------CCCcHHHHHHH
Q 002911 289 SQSDNNVKLIVLDRLNELRSSHR----DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI---------TPRNINEVVLM 355 (867)
Q Consensus 289 ~~sD~Nvk~ivL~~L~~L~~~~p----~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv---------~~~Nv~~IV~~ 355 (867)
+..+.-.++-.|..|..|.+.++ .++...+.+++-++.+-|..-|+-|.++|..|+ ++. ...+|++
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lne 785 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNE 785 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHH
Confidence 34556677778888888877766 444455566665678889999999999999888 333 2334444
Q ss_pred HHHHHHH-hhcCCccCCHHHHHHHHHHHHHhHccCCcc-----HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc
Q 002911 356 LKKEVVK-TQSGELEKNGEYRQMLIQAIHSCAIKFPEV-----ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL 429 (867)
Q Consensus 356 L~kel~~-~~~~~~d~d~e~r~~lI~aI~~la~kf~~~-----a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l 429 (867)
....+.. ..+ +....+..-|-++..+...|... ...+++.+..+|..+...++..+|.|++-++...|+.
T Consensus 786 fl~~Isagl~g----d~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 786 FLSIISAGLVG----DSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHHhhhcc----cHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 3333322 111 12233333367777777666543 3577778888899999999999999999999999875
Q ss_pred -----HHHHHHHHHHHhcc
Q 002911 430 -----RVSIITRLLDNFYQ 443 (867)
Q Consensus 430 -----r~~il~~L~~~L~~ 443 (867)
.+.++..++....+
T Consensus 862 ~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 862 CLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 23455555555544
No 90
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.87 E-value=1.3 Score=51.44 Aligned_cols=229 Identities=18% Similarity=0.292 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCch----hhHHHHHHHHHHhc-CC
Q 002911 69 TIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNET----EIIEPLIPSVLQNL-QH 142 (867)
Q Consensus 69 ~lKkL~Ylyl~~~~~~d~dg~l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~----el~e~L~~~V~~~L-~d 142 (867)
..+++..++...+.-.+++-.+ +++ -++...+.--+.+.+++.|..+++.+|.+.+. +.++.++..+...+ ..
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~-~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~ 241 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSL-PDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSS 241 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCc-cCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhccc
Confidence 4667778888887777776654 233 23333333334556799999999999987654 33444444444444 44
Q ss_pred CChHHHHHHHHHHHHhhc---cCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh--hH--------HHHHHH
Q 002911 143 RHPYIRRNAILAVMAIYK---LPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--RA--------INYLLT 209 (867)
Q Consensus 143 ~~pyVRK~A~lal~kI~~---l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~--~a--------l~~L~~ 209 (867)
..+--|..++..+..|.+ + ++.....++.+.+-.+| .+ +.+...|...+.-+-.+ .. ++.|+
T Consensus 242 ~~~~~~~~~~~~~~Wi~KaLv~-R~~~~~~~~~~~L~~lL-~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy- 316 (415)
T PF12460_consen 242 EDSELRPQALEILIWITKALVM-RGHPLATELLDKLLELL-SS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLY- 316 (415)
T ss_pred CCcchhHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHh-CC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHH-
Confidence 566677777766665555 1 22211122222222333 33 33333344333332222 10 11111
Q ss_pred HhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcc
Q 002911 210 HVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLS 289 (867)
Q Consensus 210 ~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~ 289 (867)
+| -++...+=+++..+...+...+..++..+..++.+....|... .+..+..-+++-| +
T Consensus 317 --kQ-----R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-------------~l~~LlPLLlqsL-~ 375 (415)
T PF12460_consen 317 --KQ-----RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-------------ELPTLLPLLLQSL-S 375 (415)
T ss_pred --hH-----HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-------------HHHHHHHHHHHHh-C
Confidence 00 1111111122333333333345566666666666555444432 1222333334444 6
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheec
Q 002911 290 QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRA 324 (867)
Q Consensus 290 ~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~ 324 (867)
.+|+.++..+|+.|..+....|.++++|+..++..
T Consensus 376 ~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 376 LPDADVLLSSLETLKMILEEAPELISEHLSSLIPR 410 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 78889999999999999999999999998877643
No 91
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=4.6 Score=49.42 Aligned_cols=143 Identities=15% Similarity=0.258 Sum_probs=97.5
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCC--CCchhHHHHHhhcC------CCCcchH-HHHHHHHHHHhhc----
Q 002911 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGET--LPQLFITIVRYVLP------SEDHTIQ-KLLLLYLEIIDKT---- 84 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d--~s~l~~~VIk~v~~------S~d~~lK-kL~Ylyl~~~~~~---- 84 (867)
.++-+|+.||..|...|+.+.-.++.-...-.+ +...+-..++.++. |.|-.-| +..|+....--|-
T Consensus 362 pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 362 PLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence 456799999999998887777777765555443 34455555555555 3333223 2333333322120
Q ss_pred ---CCCCCCCchHHHHHHHHHHhcCCC----CHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhcCCCChHHHHHHHHH
Q 002911 85 ---DAKGRVLPEMILICQNLRNNLQHP----NEYIRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHPYIRRNAILA 154 (867)
Q Consensus 85 ---d~dg~l~~EmiLv~NsL~KDL~~p----Ne~IRglALr~Ls~I~---~~el~e~L~~~V~~~L~d~~pyVRK~A~la 154 (867)
....++.+-.=-..|.+.-||++| +|..++.|++++--.| .++.+-.++|.+...|+..++-|-+.|+.|
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 111222222224678889999985 4889999999988877 467777788999999999999999999999
Q ss_pred HHHhhc
Q 002911 155 VMAIYK 160 (867)
Q Consensus 155 l~kI~~ 160 (867)
+=|+..
T Consensus 522 iEkil~ 527 (960)
T KOG1992|consen 522 IEKLLT 527 (960)
T ss_pred HHhccc
Confidence 999887
No 92
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.78 E-value=0.41 Score=60.07 Aligned_cols=93 Identities=14% Similarity=0.300 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhc----CCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcc----C-CCccc
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCR----LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL----P-QGEQL 167 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~----I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l----~-~~p~l 167 (867)
+|..|| -+..++- +-.||+.|.. +.+...++.+.|.+..++.|+.+-||-.|+.++.++..+ | .+..+
T Consensus 427 lts~IR-~lk~~~t--K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 427 LTSCIR-ALKTIQT--KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHH-hhhcchh--HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 444444 2333433 3345544433 356788899999999999999999999999999998762 0 11122
Q ss_pred ccch-HHHHHHHHccCCChhHHHHHHH
Q 002911 168 LVDA-PEMIEKVLSTEQDPSAKRNAFL 193 (867)
Q Consensus 168 i~d~-~~ll~~lL~~D~D~~v~~~A~~ 193 (867)
.|+. .+.|..++ .|+++..+|.|+.
T Consensus 504 F~eYlfP~L~~l~-~d~~~~~vRiayA 529 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLL-NDSSAQIVRIAYA 529 (1431)
T ss_pred hHhhhhhhhHhhh-ccCccceehhhHH
Confidence 2332 24566655 6756665555553
No 93
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.77 E-value=0.89 Score=54.86 Aligned_cols=258 Identities=15% Similarity=0.250 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCchhHHHHHhhcCCCCcchHHH-----------HHHHHHHHhhcCCCCCCCchH-HHH
Q 002911 32 PAKVDAMKKAIMLLLNG--ETLPQLFITIVRYVLPSEDHTIQKL-----------LLLYLEIIDKTDAKGRVLPEM-ILI 97 (867)
Q Consensus 32 ~~K~~alkklI~l~~~G--~d~s~l~~~VIk~v~~S~d~~lKkL-----------~Ylyl~~~~~~d~dg~l~~Em-iLv 97 (867)
.+-.+.+++|....... .+....|..+++.+=..+.-.+..+ -.+|+..++.. |. ++. ..+
T Consensus 288 ~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~---GT--~~a~~~i 362 (574)
T smart00638 288 VQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYEKKKKARRIFLDAVAQA---GT--PPALKFI 362 (574)
T ss_pred hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CC--HHHHHHH
Confidence 34456677766543332 3466678888874422222222222 22333333222 32 232 344
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhc-C--CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccC--CCc----ccc
Q 002911 98 CQNLRNNLQHPNEYIRGVTLRFLCR-L--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLP--QGE----QLL 168 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~-I--~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~--~~p----~li 168 (867)
.+.|++.=-++ ..+.-++-.+.. + .++++++.+.+-+..--..+++|+|..|+++++.+.+.- ..+ .++
T Consensus 363 ~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~ 440 (574)
T smart00638 363 KQWIKNKKITP--LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL 440 (574)
T ss_pred HHHHHcCCCCH--HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Confidence 45555422222 223333333322 2 466776666654444334469999999999998766510 111 112
Q ss_pred cchHHHHHHHHc---cCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHH
Q 002911 169 VDAPEMIEKVLS---TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIK 245 (867)
Q Consensus 169 ~d~~~ll~~lL~---~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~ 245 (867)
.++.+.+...|. ++.|..-+..++.+|..+....++.+|...+..-....+.++..++..|++.+...|.. ..+
T Consensus 441 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---v~~ 517 (574)
T smart00638 441 EELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---VQE 517 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---HHH
Confidence 233333332221 45666677788999999988878888777765223456788999999999987766653 344
Q ss_pred HHHHHHcCC--ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 002911 246 IIISLLNAP--STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRL 303 (867)
Q Consensus 246 ~L~~lL~s~--s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L 303 (867)
.+.+++.+. .+.|+..|...|+...|+...++.++ ..+..++++.|+-.+...|
T Consensus 518 ~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia----~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 518 VLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIA----ELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHH----HHHhhcCcHHHHHHhHHhh
Confidence 555555543 45699999999999977666555554 4455677777877666554
No 94
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.74 E-value=0.84 Score=50.30 Aligned_cols=315 Identities=16% Similarity=0.185 Sum_probs=167.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCC
Q 002911 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (867)
Q Consensus 19 ~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~-------s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~ 91 (867)
+-++-+.|-|.|.+....+..|.=.+...-..- ....+..|.|+-.++.+.++-=+--++..++ .|.-.
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNia----SGtt~ 148 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIA----SGTTQ 148 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhc----cCccc
Confidence 345667778888888877776665544433211 1223344553213333333332322233332 12211
Q ss_pred ch-HH---HHHHHHHHhcCCCCHHHHHHHHHHhhcCC-chhhHHH------HHHHHHHhcCCCC--hHHHHHHHHHHHHh
Q 002911 92 PE-MI---LICQNLRNNLQHPNEYIRGVTLRFLCRLN-ETEIIEP------LIPSVLQNLQHRH--PYIRRNAILAVMAI 158 (867)
Q Consensus 92 ~E-mi---Lv~NsL~KDL~~pNe~IRglALr~Ls~I~-~~el~e~------L~~~V~~~L~d~~--pyVRK~A~lal~kI 158 (867)
+- .. =++-.|..=|.+++.-||-.|.=+||+|. ..+.+.. .+.++...+.++. --.-|+|...+..+
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 11 11 13456677788999999999999999995 3333332 2345555665544 46678999999999
Q ss_pred hccCCCc----ccccchHHHHHHHHccCCChhHHHHHHHHHHhcc--hhhHHH---------HHHHHhhhcCccchHHHH
Q 002911 159 YKLPQGE----QLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD--QDRAIN---------YLLTHVDRVSEWGELLQM 223 (867)
Q Consensus 159 ~~l~~~p----~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~--~~~al~---------~L~~~l~~i~~~~p~lQ~ 223 (867)
.+= +.| +.+..+.+++.+++ ...|+.|...|+-++..+. |..+++ .|..++. ..+.-.|.
T Consensus 229 cRG-knP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs---~~sa~iqt 303 (526)
T COG5064 229 CRG-KNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS---HESAKIQT 303 (526)
T ss_pred hCC-CCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc---CccccccC
Confidence 872 233 11223456787866 6889999999998888774 333222 2333332 12222233
Q ss_pred HHHHHHHHhhhcC----------------------chh-------------------------HHHHHHHHHHHHcCCCh
Q 002911 224 VVLELIRKVCRTN----------------------KGE-------------------------KGKYIKIIISLLNAPST 256 (867)
Q Consensus 224 ~iL~ll~~~~~~~----------------------p~~-------------------------~~~li~~L~~lL~s~s~ 256 (867)
-+|+.++.....+ |.+ -..++.+|..+|.+..-
T Consensus 304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~ 383 (526)
T COG5064 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY 383 (526)
T ss_pred HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3333333332211 110 12344566666666666
Q ss_pred HHHHHHHHHHHhcCC----ChHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHh----------hChhhHHHH
Q 002911 257 AVIYECAGTLVSLSS----APTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRS----------SHRDIMVDL 317 (867)
Q Consensus 257 aV~~eaa~tL~~Ls~----~p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~----------~~p~~l~~~ 317 (867)
-+.-||++++.+.++ -|..++. +..+++.+| .-.||.+--++|+.+..+.. .+++.-..+
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L-~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~ 462 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLL-DVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVY 462 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHH-hccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHH
Confidence 677777777776643 2444443 335566655 45565566666666665543 122222222
Q ss_pred HH------hheecccCCCHHHHHHHHHHHhcc
Q 002911 318 IM------DVLRALNSPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 318 ~~------~il~~L~d~d~~IR~kaLelL~~L 343 (867)
+. .|..|=++.+..|-.||-.|+-+.
T Consensus 463 vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 463 VEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKF 494 (526)
T ss_pred HHhcccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 21 233344555666666666665543
No 95
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.60 E-value=0.087 Score=48.57 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002911 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
+++.+.+.+.+.++++|+.|+.|+..+.. ..|.... +..+.+..+| .++|+.++.+|+.+|..+...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~--~~~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSA--GNNDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccC
Confidence 67888889999999999999999999988 5443332 3345555655 678899999999988887644
No 96
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.57 E-value=0.26 Score=59.50 Aligned_cols=183 Identities=18% Similarity=0.243 Sum_probs=113.3
Q ss_pred CCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCC-CCCCchhHHHHHhhcCC----CCcchHHHHHHHHHHHhh-cCCC
Q 002911 14 GTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNG-ETLPQLFITIVRYVLPS----EDHTIQKLLLLYLEIIDK-TDAK 87 (867)
Q Consensus 14 ~~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G-~d~s~l~~~VIk~v~~S----~d~~lKkL~Ylyl~~~~~-~d~d 87 (867)
++.+.+.-|++.+.+++... .++...+..+.... ++...++-.+..++ .+ +...++.-+.+.+..+.. ...+
T Consensus 354 GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~-~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 354 GTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPTEEILKALFELA-ESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCCHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 34567778888888876533 23333344433433 44444444444322 22 223455544444443221 1111
Q ss_pred CC-----CCchHH-HHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcc
Q 002911 88 GR-----VLPEMI-LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL 161 (867)
Q Consensus 88 g~-----l~~Emi-Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l 161 (867)
.+ +.++.+ -+.+.+.+..+..++..+-.+|++||+++.|..+..+.|.+. .-....+++|..|+.|+.++-.
T Consensus 432 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~- 509 (574)
T smart00638 432 TPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAK- 509 (574)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHH-
Confidence 11 111221 234555566666788889999999999999999999888775 3345678999999999999887
Q ss_pred CCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH
Q 002911 162 PQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA 203 (867)
Q Consensus 162 ~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a 203 (867)
..|+.+.+. ++.-++....++.++.+|+.+|..+.|..+
T Consensus 510 -~~p~~v~~~--l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~ 548 (574)
T smart00638 510 -RDPRKVQEV--LLPIYLNRAEPPEVRMAAVLVLMETKPSVA 548 (574)
T ss_pred -hCchHHHHH--HHHHHcCCCCChHHHHHHHHHHHhcCCCHH
Confidence 667654421 222234467888999999999999988753
No 97
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=9 Score=48.32 Aligned_cols=246 Identities=16% Similarity=0.181 Sum_probs=121.6
Q ss_pred CCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHHhcCCC----CHHHH-HHHHHHhh
Q 002911 48 GETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRNNLQHP----NEYIR-GVTLRFLC 121 (867)
Q Consensus 48 G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em-iLv~NsL~KDL~~p----Ne~IR-glALr~Ls 121 (867)
|+|++...=.||+.+++.-+..--.+.+=++.-+.+... .+-+|+ .=++.+..- +.+| +...- ++||--|+
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~--rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA 408 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS--RLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELA 408 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc--cCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHH
Confidence 555666555666666554444444455555554444332 111333 223332222 4444 33331 22333222
Q ss_pred --cCCchhhHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHhhccCCCcccccch-----HHHHHHHHccCCChh
Q 002911 122 --RLNETEIIEPLIPSVLQNLQHR--------HPYIRRNAILAVMAIYKLPQGEQLLVDA-----PEMIEKVLSTEQDPS 186 (867)
Q Consensus 122 --~I~~~el~e~L~~~V~~~L~d~--------~pyVRK~A~lal~kI~~l~~~p~li~d~-----~~ll~~lL~~D~D~~ 186 (867)
.+--|..++.++|.|.+.|... -..||=.|+..+..+++- -.|+-+..+ ..++...+ -|.+..
T Consensus 409 ~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~Al-FDrevn 486 (1133)
T KOG1943|consen 409 LRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVAL-FDREVN 486 (1133)
T ss_pred hcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHh-cCchhh
Confidence 3446888889999999998653 346999999877777762 222222212 23444444 699999
Q ss_pred HHHHHHHHHHhcc-hh----hHHHHHHHHhhh--cC-ccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHH-HcCCChH
Q 002911 187 AKRNAFLMLFTCD-QD----RAINYLLTHVDR--VS-EWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISL-LNAPSTA 257 (867)
Q Consensus 187 v~~~A~~~L~ei~-~~----~al~~L~~~l~~--i~-~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~l-L~s~s~a 257 (867)
|+|+|..+|.|.- .. .+++.+. ..+. +. ..+-|.++.. .....|..+..+++.+..- +.+=+..
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis-~~dy~sV~~rsNcy~~l~~------~ia~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHGISLIS-TIDYFSVTNRSNCYLDLCV------SIAEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCchhhhh-hcchhhhhhhhhHHHHHhH------HHHhhhhHHHHHHHHHHhcccccccHH
Confidence 9999999999853 21 1122211 1111 10 1112322211 1112233333333333222 3334677
Q ss_pred HHHHHHHHHHhcCC-ChHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 002911 258 VIYECAGTLVSLSS-APTAIR-AAANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (867)
Q Consensus 258 V~~eaa~tL~~Ls~-~p~~lk-~aa~~li~ll~~~sD~Nvk~ivL~~L~~L 306 (867)
++..+|.+|..|+. .|+.+. ..-.+++.... .+|.+.|.-..-+..++
T Consensus 560 irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l-s~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKYLADYVLPPLLDSTL-SKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc-CCChHHhhhhHHHHHHH
Confidence 88888888887653 232222 12234444442 45666666544444443
No 98
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.54 E-value=0.57 Score=51.76 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc--
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-- 170 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I--~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d-- 170 (867)
-|..+-+..-++|+++.||..|+++||-. -+++++..-++-+.+++...++.||-.|+-|+.-+... ++++..+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~-~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLT-HGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCchhccchh
Confidence 35667777899999999999999999865 57899999999999999777999999999999998874 44444332
Q ss_pred ----------hHHHHHHHHccCCChhHHHHHHHHHHh
Q 002911 171 ----------APEMIEKVLSTEQDPSAKRNAFLMLFT 197 (867)
Q Consensus 171 ----------~~~ll~~lL~~D~D~~v~~~A~~~L~e 197 (867)
..+++.++| .+.++.++..|...++.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCK 140 (298)
T ss_pred ccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 234666666 44477777777766654
No 99
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.33 E-value=2.9 Score=46.15 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=46.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002911 135 SVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 135 ~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
-|..++.|.++.||+.|+.|++-+.- .+.++..+...++...+ ...+..++..|+.++.++-
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~L--ld~~~a~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll 92 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCL--LDKELAKEHLPLFLQAL-QKDDEEVKITALKALFDLL 92 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 34478899999999999999998877 56666666555665655 3447888888888877653
No 100
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.89 E-value=0.23 Score=53.11 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
++|+|-.-|..++..+|.-+--++|.+.+|.-++.|...+...- .||+||--|+.|++.|.. ++..+.++
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~--E~pMVRhEaAeALGaIa~--------e~~~~vL~ 257 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDET--EHPMVRHEAAEALGAIAD--------EDCVEVLK 257 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhh--cchHHHHHHHHHHHhhcC--------HHHHHHHH
Confidence 67899999999999999999999999999888665544333322 589999999999998866 45668888
Q ss_pred HHHccCCChhHHHHHHHHHHhc
Q 002911 177 KVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~L~ei 198 (867)
+++ .|.++.|+-.+..+|.-+
T Consensus 258 e~~-~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EYL-GDEERVVRESCEVALDML 278 (289)
T ss_pred HHc-CCcHHHHHHHHHHHHHHH
Confidence 876 788888888777776543
No 101
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.80 E-value=2.5 Score=49.91 Aligned_cols=233 Identities=18% Similarity=0.180 Sum_probs=151.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCchh-------hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-
Q 002911 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNETE-------IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV- 169 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~~~e-------l~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~- 169 (867)
-|-|...|....|.+-|.-|.++|.|-+-- =+..++|.+...|.++|.-|--+.+.-+++|.. .+|+.++
T Consensus 648 g~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~--~~peyi~~ 725 (975)
T COG5181 648 GNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICM--NSPEYIGV 725 (975)
T ss_pred hHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHh--cCcccCCH
Confidence 345555666667777888888888775321 123467778888899999999999999999999 8898775
Q ss_pred -ch----HHHHHHHHccCCChhHHHHHHHHHHhcc----hhhHHHHHHHHh-----------------------------
Q 002911 170 -DA----PEMIEKVLSTEQDPSAKRNAFLMLFTCD----QDRAINYLLTHV----------------------------- 211 (867)
Q Consensus 170 -d~----~~ll~~lL~~D~D~~v~~~A~~~L~ei~----~~~al~~L~~~l----------------------------- 211 (867)
+| .++++. | ...+-..+|||-..+.-|. |.+-+..|.+.+
T Consensus 726 rEWMRIcfeLvd~-L-ks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP 803 (975)
T COG5181 726 REWMRICFELVDS-L-KSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLP 803 (975)
T ss_pred HHHHHHHHHHHHH-H-HHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHH
Confidence 34 355654 3 6778899999998888654 444333333322
Q ss_pred ---hhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHH----cCCChHHHHHHHHHHHhcCCCh--HHHHHHHHH
Q 002911 212 ---DRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLL----NAPSTAVIYECAGTLVSLSSAP--TAIRAAANT 282 (867)
Q Consensus 212 ---~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL----~s~s~aV~~eaa~tL~~Ls~~p--~~lk~aa~~ 282 (867)
++-.++.-..|--+|+.+.-+...-.+...+|+-.+.++| ...++.-+--|++++-++.-++ +....++..
T Consensus 804 ~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH 883 (975)
T COG5181 804 TLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH 883 (975)
T ss_pred HHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH
Confidence 2223455566777777665543322233455555555544 4556767777888887775443 233446666
Q ss_pred HHHHHc---cCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhheecccCCCHHHHHHHH
Q 002911 283 YSQLLL---SQSDNNVKLIVLDRLNELRSS-HRDIMVDLIMDVLRALNSPNLDIRRKTL 337 (867)
Q Consensus 283 li~ll~---~~sD~Nvk~ivL~~L~~L~~~-~p~~l~~~~~~il~~L~d~d~~IR~kaL 337 (867)
++.++. -++.|.+.....+.+..+.+. .+..+-.| +.+-|.+|...||++=-
T Consensus 884 LlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Y---v~qGLFHPs~~VRk~yw 939 (975)
T COG5181 884 LLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKY---VQQGLFHPSSTVRKRYW 939 (975)
T ss_pred HHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHH---HHHhccCchHHHHHHHH
Confidence 666653 245677877777777777653 55555555 44578899999998643
No 102
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=1.7 Score=52.04 Aligned_cols=129 Identities=17% Similarity=0.260 Sum_probs=80.5
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCCCCchH-HHHHH-HHHHhcCCCCHHHHHHHHHHhhcCC--------chhhHHH-HHH
Q 002911 66 EDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQ-NLRNNLQHPNEYIRGVTLRFLCRLN--------ETEIIEP-LIP 134 (867)
Q Consensus 66 ~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em-iLv~N-sL~KDL~~pNe~IRglALr~Ls~I~--------~~el~e~-L~~ 134 (867)
++-.+-+.|=+|+..+- ..+|+++.|+ -=++. .++..+--|..-+-+.-=+.|+.+. ..+|+-. +-|
T Consensus 100 ~ks~~~~~geI~frAWk--ea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p 177 (1005)
T KOG1949|consen 100 QKSLMVYIGEIYFRAWK--EASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKP 177 (1005)
T ss_pred cHHHHHHHhHHHHHHHH--HhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhH
Confidence 44556677777777663 4457777664 11222 2223332233222222223333332 3444444 456
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc--------hHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002911 135 SVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD--------APEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 135 ~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d--------~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
.+-+.|.-+|+.||-+|+.-....|-+ .+|++-.. -...++++| .|.=|.|+..|+.-++.+
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL-~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLL-EDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHH
Confidence 777889999999999999999999998 78877322 235677866 888899999888776654
No 103
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.59 E-value=2.9 Score=50.07 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCC-----chhhHH-------HHHHHHHHhcCCCChHHHHHHHHHHHHhhccC-CC
Q 002911 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN-----ETEIIE-------PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLP-QG 164 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~-----~~el~e-------~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~-~~ 164 (867)
-+.+-+=|.+..-..|++-+...+++. .+++.+ .|+.-+.+-+.|.+||+|-+|+..+-+||.+| ..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 578888889999999999999999875 444544 57777888899999999999999999999953 22
Q ss_pred cccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002911 165 EQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 165 p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
+.-..++.+++-+.| .|...-|++||+..+..+
T Consensus 381 ~~~r~ev~~lv~r~l-qDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 VGRRHEVIRLVGRRL-QDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cchHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Confidence 222233556666666 788899999999987765
No 104
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=3.3 Score=52.47 Aligned_cols=277 Identities=16% Similarity=0.176 Sum_probs=160.3
Q ss_pred HHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHH-hcCCCCHHHHHHHHHHh
Q 002911 43 MLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRN-NLQHPNEYIRGVTLRFL 120 (867)
Q Consensus 43 ~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em-iLv~NsL~K-DL~~pNe~IRglALr~L 120 (867)
|++..+.|+...+.+-+.... .++...+.-+.++..+....+-++..+|- +=..+++.. +.++.+.-++--|-|.|
T Consensus 601 ~~~~t~~dv~~~l~~s~~e~a--s~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL 678 (1176)
T KOG1248|consen 601 YFTVTPTDVVGSLKDSAGELA--SDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLL 678 (1176)
T ss_pred HhhcccHHHHHHHHHHHHhHh--ccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHH
Confidence 456667777777887776553 33334555555555544444333333342 222234544 45666888888887777
Q ss_pred hcCCch--------hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc----ccccch-HHHHHHHHccCCChhH
Q 002911 121 CRLNET--------EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE----QLLVDA-PEMIEKVLSTEQDPSA 187 (867)
Q Consensus 121 s~I~~~--------el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p----~li~d~-~~ll~~lL~~D~D~~v 187 (867)
..+... .-++.+...+.+.+++...++|+.++-|+..||+ ..+ ++++.. +|+|-. .+|.|...
T Consensus 679 ~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~--~~~~e~~~~i~k~I~EvIL~--~Ke~n~~a 754 (1176)
T KOG1248|consen 679 EELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK--LLSAEHCDLIPKLIPEVILS--LKEVNVKA 754 (1176)
T ss_pred HHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHh--cccccHHH
Confidence 666433 4556677777777888899999999999999999 455 444442 455532 38888889
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHH----HHHHH
Q 002911 188 KRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAV----IYECA 263 (867)
Q Consensus 188 ~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV----~~eaa 263 (867)
+++||.+|..+.. +...++...+ | +-.+| ..|+..|..-+-..+.-+ +....
T Consensus 755 R~~Af~lL~~i~~------i~~~~d~g~e--~--~~~~l--------------nefl~~Isagl~gd~~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 755 RRNAFALLVFIGA------IQSSLDDGNE--P--ASAIL--------------NEFLSIISAGLVGDSTRVVASDIVAIT 810 (1176)
T ss_pred HhhHHHHHHHHHH------HHhhhccccc--c--hHHHH--------------HHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 9999999988775 1111221112 2 11111 122333333322222111 11222
Q ss_pred HHHHhcCC--ChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhh-HHHHH----HhheecccCCCHHHHHHH
Q 002911 264 GTLVSLSS--APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI-MVDLI----MDVLRALNSPNLDIRRKT 336 (867)
Q Consensus 264 ~tL~~Ls~--~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~-l~~~~----~~il~~L~d~d~~IR~ka 336 (867)
.++..... +.+.+..+... +.+++.++.+.++-.++.-+..+....|.. +++|. ..+++.+.+-..++|.+.
T Consensus 811 ~il~e~~~~ld~~~l~~li~~-V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISM-VCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22222211 12233334433 344556777888888888888888887764 34554 345555556688888888
Q ss_pred HHHHhccCCCCcHH
Q 002911 337 LDIVLELITPRNIN 350 (867)
Q Consensus 337 LelL~~Lv~~~Nv~ 350 (867)
..++-.|+..--++
T Consensus 890 r~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 890 RLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHHHhCHH
Confidence 88777776554444
No 105
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.44 E-value=0.67 Score=58.21 Aligned_cols=235 Identities=16% Similarity=0.176 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHHHHc----CCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh
Q 002911 238 GEKGKYIKIIISLLN----APSTAVIYECAGTLVSLSSAP-TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD 312 (867)
Q Consensus 238 ~~~~~li~~L~~lL~----s~s~aV~~eaa~tL~~Ls~~p-~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~ 312 (867)
+...++..++.+.-. .++|.+...|.-+|.++-.-. +.-.....-+++.+-+++++-+|.-..-.+..+.-++|.
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 345667777777764 356889999988888875422 223334566778887889999999888889999989999
Q ss_pred hHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc
Q 002911 313 IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV 392 (867)
Q Consensus 313 ~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~ 392 (867)
++.++-..+++.|.|++..||+-|+-++..|.-..=++ |=..+ .++..+.. |.+.+++..+=.-.+.++.|-
T Consensus 995 lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK-VKGql-~eMA~cl~---D~~~~IsdlAk~FF~Els~k~--- 1066 (1251)
T KOG0414|consen 995 LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK-VKGQL-SEMALCLE---DPNAEISDLAKSFFKELSSKG--- 1066 (1251)
T ss_pred ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH-hcccH-HHHHHHhc---CCcHHHHHHHHHHHHHhhhcc---
Confidence 99999999999999999999999999988765432221 11111 13333433 567777777766677777664
Q ss_pred HHHHHHHHHHHH---cCCC--cccHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHhccc----chHh
Q 002911 393 ASTVVHLLMDFL---GDSN--VASAIDVIIFVREIIEMNPKL---------------RVSIITRLLDNFYQI----RAAR 448 (867)
Q Consensus 393 a~~~v~~Ll~lL---~~~~--~~v~~evi~~l~~ii~~~p~l---------------r~~il~~L~~~L~~i----~~~~ 448 (867)
..+.++|=++| ++++ ...-..+..|+-.++.+.|.. .+..++++...|... ....
T Consensus 1067 -n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkderf~~~~~~rycl~~l~~~e~~~kk~~~~f~~~a~k~~~d~ 1145 (1251)
T KOG0414|consen 1067 -NTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDERFSADRIERYCLSLLTTTERGSKKLKDLFTALAKKVQNDS 1145 (1251)
T ss_pred -cchhhhchHHHHhhccCcccchhhHHHHHHHHHHhcccccccccccchhhhcccccchhhhhhHHHHHHHHHHHhhhhH
Confidence 23334444443 4432 112223456777777665432 234566666666443 2355
Q ss_pred HHHHHhhHhhccCCCCC-cHHHHHHHHHHhhCCC
Q 002911 449 VCTCALWIIGEYCQSLS-EVENGIATIKQCLGEL 481 (867)
Q Consensus 449 v~~~alWiLGEY~~~~~-~i~~~~~~i~~~l~~~ 481 (867)
+.....-+++.-....+ ....+.+.+++.+.++
T Consensus 1146 v~~~f~diis~~sk~a~pe~ka~~~efe~ki~~~ 1179 (1251)
T KOG0414|consen 1146 VYNNFIDIISKLSKFAKPELKAVIDEFEEKIKEC 1179 (1251)
T ss_pred HHHHHHHHHHHhccccCchhhHHHHHHHHHHHHH
Confidence 77777777776655444 4445555565555544
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.08 E-value=0.07 Score=43.14 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhhccCCCccccc----chHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002911 145 PYIRRNAILAVMAIYKLPQGEQLLV----DAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 145 pyVRK~A~lal~kI~~l~~~p~li~----d~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
|.||+.|+.|++.+.. ..++... ++.+.+..+| .|+++.|+.+|+.+|..+
T Consensus 1 p~vR~~A~~aLg~l~~--~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE--GCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT--TTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc--ccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 6899999999998876 4554433 3334444555 788889999999998754
No 107
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.07 E-value=0.17 Score=46.07 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=57.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCch-----hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHH
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRLNET-----EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~~-----el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ 173 (867)
+...++|+||.+.|||-+|..|.++... .-++.++.-....|.|++|||-=+|+-++..+.. .+|+.+ ++.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~--~~p~~v--l~~ 81 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD--RHPDEV--LPI 81 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH--HChHHH--HHH
Confidence 6677899999999999999999987422 2345567777788899999999999999988888 666521 234
Q ss_pred HHHHH
Q 002911 174 MIEKV 178 (867)
Q Consensus 174 ll~~l 178 (867)
+++.+
T Consensus 82 L~~~y 86 (92)
T PF10363_consen 82 LLDEY 86 (92)
T ss_pred HHHHH
Confidence 55544
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=94.05 E-value=16 Score=45.33 Aligned_cols=354 Identities=13% Similarity=0.124 Sum_probs=182.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCC----chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-ccccch
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLN----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDA 171 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~----~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~d~ 171 (867)
..+..+.=.+|.+|.+|-.+-+-++.+. .......+.|...+...|...-||=.|+-++..+..+=..+ +....+
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~ 317 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL 317 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 4466677778899999999999888875 34444556778888888999999999998888877730122 333333
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcchh----hH----HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcC--ch---
Q 002911 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQD----RA----INYLLTHVDRVSEWGELLQMVVLELIRKVCRTN--KG--- 238 (867)
Q Consensus 172 ~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~----~a----l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~--p~--- 238 (867)
.+.+-++ ..|.+..++........++... .. .......++.-....+..-..-.+-+..+-+.. ++
T Consensus 318 ~~~l~~~-~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~ 396 (759)
T KOG0211|consen 318 TESLVQA-VEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD 396 (759)
T ss_pred hHHHHHH-hcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch
Confidence 3333333 2677777766666555554321 11 111111111100000000000011111111100 00
Q ss_pred -------------------------------------hHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hHHHHHH
Q 002911 239 -------------------------------------EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTAIRAA 279 (867)
Q Consensus 239 -------------------------------------~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~~lk~a 279 (867)
....+.+.....++...+.|+...+..+..+... ...+...
T Consensus 397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 397 SSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 1122233333334444444554444333222110 0011111
Q ss_pred HH---HHHHHHccCCCHHHHHHHHHHHHHHHh-hChhhHHHHHHhhe-ecccCCCHHHHHHHHHHHhccC----CCCcHH
Q 002911 280 AN---TYSQLLLSQSDNNVKLIVLDRLNELRS-SHRDIMVDLIMDVL-RALNSPNLDIRRKTLDIVLELI----TPRNIN 350 (867)
Q Consensus 280 a~---~li~ll~~~sD~Nvk~ivL~~L~~L~~-~~p~~l~~~~~~il-~~L~d~d~~IR~kaLelL~~Lv----~~~Nv~ 350 (867)
.. +.+.-+.......+|...++.+-.+.. .+-.++.+-...+. .-+.|-...||+.+..-+..++ .+--..
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~ 556 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL 556 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH
Confidence 11 111112122224556666666655543 23344444333332 2245556678887776555443 222233
Q ss_pred HHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc--HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh-Cc
Q 002911 351 EVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV--ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM-NP 427 (867)
Q Consensus 351 ~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~--a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~-~p 427 (867)
.++..+..... +.+.-+|...+.+|+.++.-+... ....++++.++..|....++..++..+..++.. .+
T Consensus 557 ~~i~k~L~~~~-------q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 557 EEIPKLLAMDL-------QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred HhhHHHHHHhc-------CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 33433332111 224678888899998888776543 357788888888888888888888777777653 45
Q ss_pred ccHHHHHHHHHHHhcccchHhHHHHHhhHhh
Q 002911 428 KLRVSIITRLLDNFYQIRAARVCTCALWIIG 458 (867)
Q Consensus 428 ~lr~~il~~L~~~L~~i~~~~v~~~alWiLG 458 (867)
..+...+.++.+.|..-.+..++-.+.=..|
T Consensus 630 ~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 630 SVRDEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 6677777788887766555555544444444
No 109
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=23 Score=44.44 Aligned_cols=440 Identities=16% Similarity=0.199 Sum_probs=238.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCC-cchHHHHHHHHHHHh-h---cC-----CCCCCCchHHHHHHH
Q 002911 31 VPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSED-HTIQKLLLLYLEIID-K---TD-----AKGRVLPEMILICQN 100 (867)
Q Consensus 31 ~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d-~~lKkL~Ylyl~~~~-~---~d-----~dg~l~~EmiLv~Ns 100 (867)
...|+.|=..| .+-+..+.+.+.+.+-+|.... ..+|+.+=+|+...- + .. |++-.-++--++-+.
T Consensus 18 ~~~R~~AE~~L----~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~iren 93 (1010)
T KOG1991|consen 18 AKERKAAEQQL----NQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIREN 93 (1010)
T ss_pred hHHHHHHHHHH----HHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHH
Confidence 44444444333 2335667888888875554333 346888888876531 1 11 122211223567778
Q ss_pred HHHhcCCCCHHHHHH---HHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc------------
Q 002911 101 LRNNLQHPNEYIRGV---TLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE------------ 165 (867)
Q Consensus 101 L~KDL~~pNe~IRgl---ALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p------------ 165 (867)
|..-+-+.++.+|.. .|+.+=+=.-|+=.+.+.+-+...|.+.+...---|.+|++.+++ .+.
T Consensus 94 Il~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k--~ye~k~~eeR~~l~~ 171 (1010)
T KOG1991|consen 94 ILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK--TYEWKKDEERQPLGE 171 (1010)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH--HHhhccccccccHHH
Confidence 888887778888843 444444445566678899999999999988888889999999987 444
Q ss_pred ---ccccchHHHHHHHHccCCChhHH--H---HHHHHHHh--cc-----hhhH---HHHHHHHhhh-c-----------C
Q 002911 166 ---QLLVDAPEMIEKVLSTEQDPSAK--R---NAFLMLFT--CD-----QDRA---INYLLTHVDR-V-----------S 215 (867)
Q Consensus 166 ---~li~d~~~ll~~lL~~D~D~~v~--~---~A~~~L~e--i~-----~~~a---l~~L~~~l~~-i-----------~ 215 (867)
.+.|...++...+|..++.-++. . -.|.+++. +- ++.- +..+..++++ + .
T Consensus 172 ~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R 251 (1010)
T KOG1991|consen 172 AVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDR 251 (1010)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhc
Confidence 11122233444555333333331 1 11122221 11 1111 1222333322 1 1
Q ss_pred ccch------HHHHHHHHHHHHhhhc---Cch-----------hHHHHHHHHHHHHcC------CChHHHHHHHHHHHhc
Q 002911 216 EWGE------LLQMVVLELIRKVCRT---NKG-----------EKGKYIKIIISLLNA------PSTAVIYECAGTLVSL 269 (867)
Q Consensus 216 ~~~p------~lQ~~iL~ll~~~~~~---~p~-----------~~~~li~~L~~lL~s------~s~aV~~eaa~tL~~L 269 (867)
...| |.--.+-+++.||+.. .|+ ....+++.+.+.++. -++.|.|-+.+-+-+.
T Consensus 252 ~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~ 331 (1010)
T KOG1991|consen 252 SSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQC 331 (1010)
T ss_pred ccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 2233 3334456666666532 111 123344444444432 3567888887777665
Q ss_pred CCChHH-------HHHHHHHHHHHHc--cC-------CCHH--H-------------HHHHHHHHHHHHhhC-hhhHHHH
Q 002911 270 SSAPTA-------IRAAANTYSQLLL--SQ-------SDNN--V-------------KLIVLDRLNELRSSH-RDIMVDL 317 (867)
Q Consensus 270 s~~p~~-------lk~aa~~li~ll~--~~-------sD~N--v-------------k~ivL~~L~~L~~~~-p~~l~~~ 317 (867)
-+.... ++.....+|=-++ ++ .||. + ...+++-+..+..++ ++.|++.
T Consensus 332 Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~ 411 (1010)
T KOG1991|consen 332 VSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKI 411 (1010)
T ss_pred ccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhH
Confidence 432211 2222222111111 11 1221 1 235666677777665 7777765
Q ss_pred HHhheeccc------CCCHHHHHH--HHHHHhccCC---C-CcHHHHHHHH-HHHHHHhhcCCccCCHHHHHHHHHHHHH
Q 002911 318 IMDVLRALN------SPNLDIRRK--TLDIVLELIT---P-RNINEVVLML-KKEVVKTQSGELEKNGEYRQMLIQAIHS 384 (867)
Q Consensus 318 ~~~il~~L~------d~d~~IR~k--aLelL~~Lv~---~-~Nv~~IV~~L-~kel~~~~~~~~d~d~e~r~~lI~aI~~ 384 (867)
...+...|. .+.-..|++ ||.++..|++ + +-....++.+ ..++-..-. ++-..+|..+.-.+|.
T Consensus 412 l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~---s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 412 LSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ---SPYGYLRARACWVLSQ 488 (1010)
T ss_pred HHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc---CchhHHHHHHHHHHHH
Confidence 544444444 344445554 7877776652 2 2222222211 111111001 2456899999999999
Q ss_pred hH-ccCCc--cHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHHhCcccHH-------HHHHHHHHHhcccchHhHHHHH
Q 002911 385 CA-IKFPE--VASTVVHLLMDFLG-DSNVASAIDVIIFVREIIEMNPKLRV-------SIITRLLDNFYQIRAARVCTCA 453 (867)
Q Consensus 385 la-~kf~~--~a~~~v~~Ll~lL~-~~~~~v~~evi~~l~~ii~~~p~lr~-------~il~~L~~~L~~i~~~~v~~~a 453 (867)
.+ +.|+. .....++...++|. ++.-.+..|++..++-+++..++..+ .++++|+....+.....+--++
T Consensus 489 ~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred HHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 88 77765 45788888888888 55567888999999999987765533 3455555555555544555555
Q ss_pred hhHhhccCCCCCc-HHHHHHHHHHhhC
Q 002911 454 LWIIGEYCQSLSE-VENGIATIKQCLG 479 (867)
Q Consensus 454 lWiLGEY~~~~~~-i~~~~~~i~~~l~ 479 (867)
=-++++|++...- ..+....++..+.
T Consensus 569 e~iV~~fseElsPfA~eL~q~La~~F~ 595 (1010)
T KOG1991|consen 569 EKIVCKFSEELSPFAVELCQNLAETFL 595 (1010)
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 5677788776542 3444444544443
No 110
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=21 Score=43.85 Aligned_cols=318 Identities=15% Similarity=0.174 Sum_probs=173.2
Q ss_pred CChHHHHHHHHHHHHhhccCCCcccc--cchHHHHHHHHccCCChhHHHHHHHHHHhcch-h---------h-HH-----
Q 002911 143 RHPYIRRNAILAVMAIYKLPQGEQLL--VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ-D---------R-AI----- 204 (867)
Q Consensus 143 ~~pyVRK~A~lal~kI~~l~~~p~li--~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~-~---------~-al----- 204 (867)
.-+-=||.|+.++-.+.+ .+...+ ...+.+|..+=.+-+|+..+..|+..++-+-. + . +-
T Consensus 35 TL~eDRR~A~rgLKa~sr--kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ 112 (970)
T KOG0946|consen 35 TLLEDRRDAVRGLKAFSR--KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLW 112 (970)
T ss_pred cchhhHHHHHHHHHHHHH--HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHH
Confidence 344557777777766655 443222 12345555432244677777777766654311 0 0 10
Q ss_pred ---------HHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHH-------HHHHHHHHcCCChHHHHHHHHHHHh
Q 002911 205 ---------NYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKY-------IKIIISLLNAPSTAVIYECAGTLVS 268 (867)
Q Consensus 205 ---------~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~l-------i~~L~~lL~s~s~aV~~eaa~tL~~ 268 (867)
+.+.-++..+..+|=......+++|..+-+.-|.+..+. +..+..+|..+.-.|+-+++-.|..
T Consensus 113 iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~e 192 (970)
T KOG0946|consen 113 IAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSE 192 (970)
T ss_pred HHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHH
Confidence 011111222233333345566777776654444443322 3556666766666788888888988
Q ss_pred cCCChHHHHHH------HHHHHHHHccCCCHHHHHHHHHHHHHH---Hh---hChhhHHH--HHHhheeccc---CCC--
Q 002911 269 LSSAPTAIRAA------ANTYSQLLLSQSDNNVKLIVLDRLNEL---RS---SHRDIMVD--LIMDVLRALN---SPN-- 329 (867)
Q Consensus 269 Ls~~p~~lk~a------a~~li~ll~~~sD~Nvk~ivL~~L~~L---~~---~~p~~l~~--~~~~il~~L~---d~d-- 329 (867)
+..+.+.++.+ -..+..++-.++...=-.++.+.|.-| .. .+..+|.+ |+..+..+|+ -.|
T Consensus 193 L~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~E 272 (970)
T KOG0946|consen 193 LVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGE 272 (970)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcc
Confidence 87665555543 234444443333111123444444332 22 34455542 4444443332 112
Q ss_pred ---H-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhh--------cCCccCCHHHHHHHHHHHHHhHcc-----
Q 002911 330 ---L-----DIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQ--------SGELEKNGEYRQMLIQAIHSCAIK----- 388 (867)
Q Consensus 330 ---~-----~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~--------~~~~d~d~e~r~~lI~aI~~la~k----- 388 (867)
+ .--..+|.++..+|++.|-..+...=.+-+..+. -...+-..+++...+.++.....-
T Consensus 273 v~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ 352 (970)
T KOG0946|consen 273 VFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQ 352 (970)
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHH
Confidence 1 1234689999999999987776543322111110 011124567887777777665421
Q ss_pred ----------CCccHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHh
Q 002911 389 ----------FPEVASTVVHLLMDFLGDSNVA-SAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWII 457 (867)
Q Consensus 389 ----------f~~~a~~~v~~Ll~lL~~~~~~-v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiL 457 (867)
+|+--+.++-.+|.+.....+. .+..|..+++-..-.+-+.+..++.+++..-.+-.+..+.++.+-+.
T Consensus 353 ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~ 432 (970)
T KOG0946|consen 353 DEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLV 432 (970)
T ss_pred HHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhccccccchhhhhHHHH
Confidence 2221234455556655555544 44556678888887888889999999998766555557888888888
Q ss_pred hccCC
Q 002911 458 GEYCQ 462 (867)
Q Consensus 458 GEY~~ 462 (867)
|=|..
T Consensus 433 ~l~s~ 437 (970)
T KOG0946|consen 433 GLSST 437 (970)
T ss_pred hhccc
Confidence 88864
No 111
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.91 E-value=0.44 Score=57.93 Aligned_cols=182 Identities=19% Similarity=0.261 Sum_probs=101.9
Q ss_pred CcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCC-CCCCchhHHHHHhhcC---CCCcchHHHHHHHHHHHhh--cCC--
Q 002911 15 TPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNG-ETLPQLFITIVRYVLP---SEDHTIQKLLLLYLEIIDK--TDA-- 86 (867)
Q Consensus 15 ~~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G-~d~s~l~~~VIk~v~~---S~d~~lKkL~Ylyl~~~~~--~d~-- 86 (867)
+.+.+.-+++.+.++..... ++.+-+..+...- ++...++-.+..++-. .++..++.-+.+.+..+.. +..
T Consensus 393 T~~av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~ 471 (618)
T PF01347_consen 393 TNPAVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSD 471 (618)
T ss_dssp SHHHHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccc
Confidence 44567778888888654333 3444455555555 5555555555553311 1334566555554433211 111
Q ss_pred --------CCCCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002911 87 --------KGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMA 157 (867)
Q Consensus 87 --------dg~l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~k 157 (867)
...+.++. --..+.+.+.....++.-+-.+|++||+++.|+.++.+.|.+..-- .....+|-.|+.|+.+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~ 550 (618)
T PF01347_consen 472 SAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRR 550 (618)
T ss_dssp ---------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTT
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHH
Confidence 23333333 2344666666677888999999999999999998777665333222 4488999999999999
Q ss_pred hhccCCCcccccchHHHHHH-HHccCCChhHHHHHHHHHHhcchhhH
Q 002911 158 IYKLPQGEQLLVDAPEMIEK-VLSTEQDPSAKRNAFLMLFTCDQDRA 203 (867)
Q Consensus 158 I~~l~~~p~li~d~~~ll~~-lL~~D~D~~v~~~A~~~L~ei~~~~a 203 (867)
+-. ..|+.+. +++.. +.....++.++.+|+.+|..++|..+
T Consensus 551 ~~~--~~~~~v~---~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~ 592 (618)
T PF01347_consen 551 LAK--HCPEKVR---EILLPIFMNTTEDPEVRIAAYLILMRCNPSPS 592 (618)
T ss_dssp GGG--T-HHHHH---HHHHHHHH-TTS-HHHHHHHHHHHHHT---HH
T ss_pred Hhh--cCcHHHH---HHHHHHhcCCCCChhHHHHHHHHHHhcCCCHH
Confidence 877 6665443 33333 23356778899999999999988753
No 112
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=21 Score=46.73 Aligned_cols=350 Identities=17% Similarity=0.219 Sum_probs=180.6
Q ss_pred HHHHHHHHHHhCC--CCCCchhHHHHHhhc---CCCCcchHHHHHHHHHHHhhcCCCCCCCchHH-HHHHHHHHhcCCCC
Q 002911 36 DAMKKAIMLLLNG--ETLPQLFITIVRYVL---PSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI-LICQNLRNNLQHPN 109 (867)
Q Consensus 36 ~alkklI~l~~~G--~d~s~l~~~VIk~v~---~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi-Lv~NsL~KDL~~pN 109 (867)
.+|..|--..... .-++..+-+|.+-++ .++--+.|--..+++.-+-.-.|..+.+++|- +-.-+|| -..|=-
T Consensus 1016 ~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fR-vmDDIK 1094 (1702)
T KOG0915|consen 1016 DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFR-VMDDIK 1094 (1702)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5555544433332 123445555555442 35555666667777766533333322222221 2222232 222223
Q ss_pred HHHHH---HHHHHhhcCC-----------chhhHHHHHHHHHH-hcCCCChHHHHHHHHHHHHhhccCCCc-ccccchHH
Q 002911 110 EYIRG---VTLRFLCRLN-----------ETEIIEPLIPSVLQ-NLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAPE 173 (867)
Q Consensus 110 e~IRg---lALr~Ls~I~-----------~~el~e~L~~~V~~-~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~d~~~ 173 (867)
|-+|- .|.++|+++. ..+++..+.|.+.. ..-|.-+-|||-++-.+.++.+ .++ .+.|.+++
T Consensus 1095 EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~K--ssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1095 ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAK--SSGKELKPHFPK 1172 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH--hchhhhcchhhH
Confidence 55664 4577777764 35677777777765 3448899999999999999999 554 44466666
Q ss_pred HHHHHH--ccCCChhHHHHHHHHHHhcchh-----h-----------HHHHHHHHhh---------h--------cCccc
Q 002911 174 MIEKVL--STEQDPSAKRNAFLMLFTCDQD-----R-----------AINYLLTHVD---------R--------VSEWG 218 (867)
Q Consensus 174 ll~~lL--~~D~D~~v~~~A~~~L~ei~~~-----~-----------al~~L~~~l~---------~--------i~~~~ 218 (867)
+|..++ .++-.|.|..-...=+.++..+ + +++.+.+.++ . ++-..
T Consensus 1173 LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~T 1252 (1702)
T KOG0915|consen 1173 LIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGT 1252 (1702)
T ss_pred HHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCc
Confidence 666544 2556666654222222333221 0 1111111111 0 11000
Q ss_pred hHHH-HHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHcc-CCCHH
Q 002911 219 ELLQ-MVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS--SAPTAIRAAANTYSQLLLS-QSDNN 294 (867)
Q Consensus 219 p~lQ-~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls--~~p~~lk~aa~~li~ll~~-~sD~N 294 (867)
-..- ..|..+..++...-.....++++.+...+...|++|+..++.+..++. ++|...+.....++..++. .++++
T Consensus 1253 kvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~ 1332 (1702)
T KOG0915|consen 1253 KVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK 1332 (1702)
T ss_pred chhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc
Confidence 0001 112222223332223356899999999999999999999999988873 3454555566666655543 33333
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHhheec----ccCCCHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHHHhhcCCc
Q 002911 295 VKLIVLDRLNELRSSHRDIMVDLIMDVLRA----LNSPNLDIRRKTLDIVLELIT--PRNINEVVLMLKKEVVKTQSGEL 368 (867)
Q Consensus 295 vk~ivL~~L~~L~~~~p~~l~~~~~~il~~----L~d~d~~IR~kaLelL~~Lv~--~~Nv~~IV~~L~kel~~~~~~~~ 368 (867)
-++...+..|...+++.|.+|...|+.. ..+.+......==++...++. ...+.-..++....+-....+
T Consensus 1333 --siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~n-- 1408 (1702)
T KOG0915|consen 1333 --SISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITN-- 1408 (1702)
T ss_pred --chhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhcc--
Confidence 5556666667778888888877666543 122212222221223333332 223321111111111111111
Q ss_pred cCCHHHHHHHHHHHHHhHccCCcc
Q 002911 369 EKNGEYRQMLIQAIHSCAIKFPEV 392 (867)
Q Consensus 369 d~d~e~r~~lI~aI~~la~kf~~~ 392 (867)
+.....|...+++|..++..-...
T Consensus 1409 n~~w~lr~q~Akai~~~a~~~sss 1432 (1702)
T KOG0915|consen 1409 NESWKLRKQAAKAIRVIAEGLSSS 1432 (1702)
T ss_pred chHHHHHHHHHHHHHHHccccccc
Confidence 234567888888888887664433
No 113
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=26 Score=45.91 Aligned_cols=297 Identities=15% Similarity=0.171 Sum_probs=161.0
Q ss_pred CchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH
Q 002911 124 NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA 203 (867)
Q Consensus 124 ~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a 203 (867)
...+-+..+...+..+|+++.-.||-.+++|+..+.+ ..| ..+..+++ |-.--+||.+..+|...
T Consensus 1032 ~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~--g~~-----~~~~~e~l------pelw~~~fRvmDDIKEs-- 1096 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ--GRP-----FDQVKEKL------PELWEAAFRVMDDIKES-- 1096 (1702)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc--CCC-----hHHHHHHH------HHHHHHHHHHHHHHHHH--
Confidence 3445556677778889999999999999999999988 322 22222221 22223344444433321
Q ss_pred HHHHHHHhhhcCccchHHHHHHHHHHHHhh-hcCchhHHHHHHHHHHHHcC-----CChHHHHHHHHHHHhcCCC-hHHH
Q 002911 204 INYLLTHVDRVSEWGELLQMVVLELIRKVC-RTNKGEKGKYIKIIISLLNA-----PSTAVIYECAGTLVSLSSA-PTAI 276 (867)
Q Consensus 204 l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~-~~~p~~~~~li~~L~~lL~s-----~s~aV~~eaa~tL~~Ls~~-p~~l 276 (867)
++ ..++-+--.+=+++-+.| ..++.....+++.+.+.|-. .-++|+--|+.+++.+..+ +..+
T Consensus 1097 VR----------~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1097 VR----------EAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred HH----------HHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh
Confidence 00 011111111112222222 13455566777777776654 4578999999999998643 3344
Q ss_pred HH----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHH
Q 002911 277 RA----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEV 352 (867)
Q Consensus 277 k~----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~I 352 (867)
+. ....+++.+-.-.+.-+-|++++.. . ...+++......+- -++|- ..+++.+..-++..-.+++
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~-~---~e~ealDt~R~s~a--ksspm----meTi~~ci~~iD~~vLeel 1236 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLI-N---IETEALDTLRASAA--KSSPM----METINKCINYIDISVLEEL 1236 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhh-h---hHHHHHHHHHHhhh--cCCcH----HHHHHHHHHhhhHHHHHHH
Confidence 43 4444555543334455677877762 2 23344444333332 12221 3456666666676677788
Q ss_pred HHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC----ccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH-hCc
Q 002911 353 VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP----EVASTVVHLLMDFLGDSNVASAIDVIIFVREIIE-MNP 427 (867)
Q Consensus 353 V~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~----~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~-~~p 427 (867)
++.+.+-+...++ -.-|.-...-|..++.|++ |-..-++..++..+++.++.+..........+.. ..|
T Consensus 1237 ip~l~el~R~sVg------l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1237 IPRLTELVRGSVG------LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHHhccCC------CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 8877754444332 1233334444444554443 4566777778777888777766666666666664 245
Q ss_pred ccHHHHHHHHHH-Hhcccch--HhHHHHHhhHhhccCC
Q 002911 428 KLRVSIITRLLD-NFYQIRA--ARVCTCALWIIGEYCQ 462 (867)
Q Consensus 428 ~lr~~il~~L~~-~L~~i~~--~~v~~~alWiLGEY~~ 462 (867)
+.-...+++++. .+..-.+ ..++..+.- |+.|+.
T Consensus 1311 dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~ 1347 (1702)
T KOG0915|consen 1311 DQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQ 1347 (1702)
T ss_pred HHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhH
Confidence 444445555544 3433222 223444444 666643
No 114
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.95 E-value=31 Score=42.99 Aligned_cols=282 Identities=13% Similarity=0.149 Sum_probs=152.3
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHH-hcCCCChHHHHHHHHHHHHhhccCCCc--
Q 002911 95 ILICQNLRNNLQH-PNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQ-NLQHRHPYIRRNAILAVMAIYKLPQGE-- 165 (867)
Q Consensus 95 iLv~NsL~KDL~~-pNe~IRglALr~Ls~I~~-----~el~e~L~~~V~~-~L~d~~pyVRK~A~lal~kI~~l~~~p-- 165 (867)
.-.++.+++.|.+ .-|+.-+.|+-++++..+ +.+.+..+..-.. ...|..|+||-+|+.+..-..+ ..+
T Consensus 448 ~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~ 525 (1005)
T KOG2274|consen 448 IELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLL 525 (1005)
T ss_pred HHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecc
Confidence 4567888998865 468888899999987653 4555554444343 4467899999999988776555 111
Q ss_pred ccccchHHHHHHHHccCCChhH---HHHHHHHHHhcchhhH-------HHHHHHHhhhcCccchHHHHHHHHHHHHhhhc
Q 002911 166 QLLVDAPEMIEKVLSTEQDPSA---KRNAFLMLFTCDQDRA-------INYLLTHVDRVSEWGELLQMVVLELIRKVCRT 235 (867)
Q Consensus 166 ~li~d~~~ll~~lL~~D~D~~v---~~~A~~~L~ei~~~~a-------l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~ 235 (867)
+..|.+.+.+-.+ ..+....| .-.|++..+..+|+.+ .++++.++-. .+-||..-..+-+++..++..
T Consensus 526 ~~~p~ild~L~ql-as~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 526 SLQPMILDGLLQL-ASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-YSEDPQVASLAQDLFEELLQI 603 (1005)
T ss_pred ccchHHHHHHHHH-cccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHH
Confidence 1223333333332 23333333 3344444455666654 2445555532 234554333344444444332
Q ss_pred ---CchhHHHHHHHHHHHHcCCC----h---HHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 002911 236 ---NKGEKGKYIKIIISLLNAPS----T---AVIYECAGTLVSLSSAP---TAIRAAANTYSQLLLSQSDNNVKLIVLDR 302 (867)
Q Consensus 236 ---~p~~~~~li~~L~~lL~s~s----~---aV~~eaa~tL~~Ls~~p---~~lk~aa~~li~ll~~~sD~Nvk~ivL~~ 302 (867)
-.....++++.+.+.|+.++ + ++..+...+++.-.++| ..+..+-.++.+..+-+.|+..--.+=+.
T Consensus 604 ~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 604 AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHH
Confidence 12356788899999999875 2 45555555666666554 34455556666666667777776666666
Q ss_pred HHHHHhhChh-hH---------HHHHHhheecccCCC------HHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHHHhh
Q 002911 303 LNELRSSHRD-IM---------VDLIMDVLRALNSPN------LDIRRKTLDIVLELIT--PRNINEVVLMLKKEVVKTQ 364 (867)
Q Consensus 303 L~~L~~~~p~-~l---------~~~~~~il~~L~d~d------~~IR~kaLelL~~Lv~--~~Nv~~IV~~L~kel~~~~ 364 (867)
|..+....++ ++ -.++|+++..|-||. ..|=+..+.++.+... ..|++.|+....+-++...
T Consensus 684 Lra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae 763 (1005)
T KOG2274|consen 684 LRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAE 763 (1005)
T ss_pred HHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhh
Confidence 6665543222 22 124555554443332 1233444444444332 2455555555444444321
Q ss_pred cCCccCCHHHHHHHHHHHHHhH
Q 002911 365 SGELEKNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 365 ~~~~d~d~e~r~~lI~aI~~la 386 (867)
...+-+.+|-..+.+.
T Consensus 764 ------~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 764 ------TLSVIQSLIMVFAHLV 779 (1005)
T ss_pred ------hHHHHHHHHHHHHHHh
Confidence 2344455555544444
No 115
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.91 E-value=25 Score=41.81 Aligned_cols=241 Identities=14% Similarity=0.152 Sum_probs=127.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCC----c--hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchH
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRLN----E--TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP 172 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~----~--~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~ 172 (867)
-.+.+-+.+|+--||-..|..|+.+. + ..+..-|...+.+-+-|+.|.||+-|+.|+.+.-.+ ..+--.+..
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~--~~neen~~~ 171 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM--ELNEENRIV 171 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--cCChHHHHH
Confidence 34445667899899888877777653 2 556666777777778899999999999999986552 111111234
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchH-HHHHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 002911 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGEL-LQMVVLELIRKVCRTNKGEKGKYIKIIISLL 251 (867)
Q Consensus 173 ~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~-lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL 251 (867)
.++...+..|+...|++.|+..+.. ++ ...+|+.....+++..+-- .=..+|.-+++++-.+- ..++. .+.--|
T Consensus 172 n~l~~~vqnDPS~EVRr~allni~v-dn-sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi--~kri~-l~ewgl 246 (885)
T COG5218 172 NLLKDIVQNDPSDEVRRLALLNISV-DN-STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI--DKRIL-LMEWGL 246 (885)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHeee-CC-CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc--cceeh-hhhhcc
Confidence 5666666678877889988765532 22 2356655544443321110 11122333322222111 11111 233334
Q ss_pred cCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhh-eecccCCCH
Q 002911 252 NAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDV-LRALNSPNL 330 (867)
Q Consensus 252 ~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~i-l~~L~d~d~ 330 (867)
....-+|.-.|+..+.+---.|...+. ..++..+ .-+.+. +....+..+-++.|++++.. .| -....|+..
T Consensus 247 ~dRe~sv~~a~~d~ia~~w~~~~d~~l--veLle~l-DvSr~s---v~v~aik~~F~~R~D~ls~~--eFPe~~w~d~T~ 318 (885)
T COG5218 247 LDREFSVKGALVDAIASAWRIPEDLRL--VELLEFL-DVSRRS---VLVAAIKGVFEKRPDVLSEK--EFPEYLWSDPTE 318 (885)
T ss_pred hhhhhhHHHHHHHHHHHHhcccccccH--HHHHHHH-hhhhHH---HHHHHHHHHHhhccccchhh--hcHHHHhhCchH
Confidence 445556777777777653222222111 1122322 122222 44455666777788877652 12 123445444
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHH
Q 002911 331 DIRRKTLDIVLELITPRNINEVVLM 355 (867)
Q Consensus 331 ~IR~kaLelL~~Lv~~~Nv~~IV~~ 355 (867)
...-.+= ..+..|=+.|+.+++..
T Consensus 319 E~tfL~r-t~~lyCldnNitell~~ 342 (885)
T COG5218 319 ENTFLSR-TELLYCLDNNITELLGR 342 (885)
T ss_pred HHHHHHH-HHHHHHHhccHHHHHhh
Confidence 4332221 12234567899888876
No 116
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.43 E-value=32 Score=41.86 Aligned_cols=142 Identities=16% Similarity=0.236 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhC---CCCC-CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH--HHHHHHHHhcC
Q 002911 33 AKVDAMKKAIMLLLN---GETL-PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI--LICQNLRNNLQ 106 (867)
Q Consensus 33 ~K~~alkklI~l~~~---G~d~-s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi--Lv~NsL~KDL~ 106 (867)
+-.+.+.+.+..+-+ |+|+ ..+|-+++|.+ .+++..+|.=+..-+..+ .|..++. +|-+ ...-.+.+-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l--~d~~~ei-dd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALL--SDENAEI-DDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHH--hcccccc-CHHHHHHHHHHHHHHHh
Confidence 334556555554432 3332 45677788865 778877775555544444 4444553 5532 34456777888
Q ss_pred CCCHHHHHHHHHHhhcCCchhhH--HHHHHHHHHhc-CCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCC
Q 002911 107 HPNEYIRGVTLRFLCRLNETEII--EPLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQ 183 (867)
Q Consensus 107 ~pNe~IRglALr~Ls~I~~~el~--e~L~~~V~~~L-~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~ 183 (867)
|.-|-||--|+-+||++...+.= -++....+..+ +|+++-|||.|..++. .++...| -++++. .|-
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~------vdnsTlp---~IveRa--rDV 205 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNIS------VDNSTLP---CIVERA--RDV 205 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhc------cCcccch---hHHHHh--hhh
Confidence 99999999999999999732111 12233333333 6899999999988775 4555554 344442 344
Q ss_pred ChhHHH
Q 002911 184 DPSAKR 189 (867)
Q Consensus 184 D~~v~~ 189 (867)
+..+++
T Consensus 206 ~~anRr 211 (892)
T KOG2025|consen 206 SGANRR 211 (892)
T ss_pred hHHHHH
Confidence 444444
No 117
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=16 Score=42.31 Aligned_cols=323 Identities=15% Similarity=0.223 Sum_probs=160.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCc----h-hhH-HHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNE----T-EII-EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~----~-el~-e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d 170 (867)
++-.+-|.|+-.|.-.--+...||-++.. . +|. -.++.-+.+.....||-.|+..++-++.+. ++.-+.|.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlS---FD~glr~K 381 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLS---FDSGLRPK 381 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcc---ccccccHH
Confidence 34455666666666666666777766541 1 111 113445566777889999988777776642 45555554
Q ss_pred h-----HHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcC--chhHHHH
Q 002911 171 A-----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN--KGEKGKY 243 (867)
Q Consensus 171 ~-----~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~--p~~~~~l 243 (867)
. .+.+..+|.+|+-. +-|+.+|++++-+.-.. +=|.+.-.++++.+..-.. .+.-..+
T Consensus 382 Mv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K------------~MfayTdci~~lmk~v~~~~~~~vdl~l 446 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAK------------AMFAYTDCIKLLMKDVLSGTGSEVDLAL 446 (791)
T ss_pred HhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHH------------HHHHHHHHHHHHHHHHHhcCCceecHHH
Confidence 2 34555666444433 34566777665442111 1122333444443321111 1111112
Q ss_pred HHHHHH-HHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh---ChhhHHHHHH
Q 002911 244 IKIIIS-LLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS---HRDIMVDLIM 319 (867)
Q Consensus 244 i~~L~~-lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~---~p~~l~~~~~ 319 (867)
+..+.+ .++..|.-++.|. ..+ .-+++..++..|+-+ ...+..|.+. -...|-+++.
T Consensus 447 ia~ciNl~lnkRNaQlvceG-----------qgL----~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidyvg 507 (791)
T KOG1222|consen 447 IALCINLCLNKRNAQLVCEG-----------QGL----DLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDYVG 507 (791)
T ss_pred HHHHHHHHhccccceEEecC-----------cch----HHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHHHH
Confidence 211111 1222222111110 001 112233333333211 1112222221 1134455666
Q ss_pred hheeccc-CCCHHHHHHHHHHHhccC-CCCcHHHHH------HHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc
Q 002911 320 DVLRALN-SPNLDIRRKTLDIVLELI-TPRNINEVV------LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE 391 (867)
Q Consensus 320 ~il~~L~-d~d~~IR~kaLelL~~Lv-~~~Nv~~IV------~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~ 391 (867)
++.+.++ +++.+.-...|.++..|. +.--+..|+ +-++..|+...+ ..++.-.+|-++|.+|..-.-
T Consensus 508 dLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~-----eddLvL~~vi~~GT~a~d~~c 582 (791)
T KOG1222|consen 508 DLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGAD-----EDDLVLQIVIACGTMARDLDC 582 (791)
T ss_pred HHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCcc-----chhhhhHHHHHhhhhhhhhHH
Confidence 6655554 445565566666666554 233455444 445555544332 346888888899987754211
Q ss_pred ----cHHHHHHHHHHHHcCCC--cccHHHHHHHHHHHHHhCcccHHHHHH------HHHHHhcccch--HhHHHHHhhHh
Q 002911 392 ----VASTVVHLLMDFLGDSN--VASAIDVIIFVREIIEMNPKLRVSIIT------RLLDNFYQIRA--ARVCTCALWII 457 (867)
Q Consensus 392 ----~a~~~v~~Ll~lL~~~~--~~v~~evi~~l~~ii~~~p~lr~~il~------~L~~~L~~i~~--~~v~~~alWiL 457 (867)
...-+++.++++|.... +..+..++.++.+++.+ ...|..+++ .|++.+.+-.. -+|+-.++-|+
T Consensus 583 A~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 583 ARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDII 661 (791)
T ss_pred HHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11357889999887533 45566666666666654 333444433 56676665332 35777889999
Q ss_pred hccCC
Q 002911 458 GEYCQ 462 (867)
Q Consensus 458 GEY~~ 462 (867)
|||..
T Consensus 662 ae~d~ 666 (791)
T KOG1222|consen 662 AEHDK 666 (791)
T ss_pred HHhhH
Confidence 99854
No 118
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.39 E-value=0.74 Score=52.80 Aligned_cols=140 Identities=16% Similarity=0.355 Sum_probs=76.9
Q ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHHHHhCCCC------CCchhHHHHHhhcCC-CCcchHHHHHHHHHHHhhcCCCCCC
Q 002911 19 ANEIKEALEGN-DVPAKVDAMKKAIMLLLNGET------LPQLFITIVRYVLPS-EDHTIQKLLLLYLEIIDKTDAKGRV 90 (867)
Q Consensus 19 ~~eIr~~L~s~-~~~~K~~alkklI~l~~~G~d------~s~l~~~VIk~v~~S-~d~~lKkL~Ylyl~~~~~~d~dg~l 90 (867)
+.+.-+.+.+. ..+.+.+||..|..++.-|.- ...++-.+.. ++.. .++..|+++.--++-.-+..| ..+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~E-vL~d~~~~~~k~laLrvL~~ml~~Q~-~~l 365 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLE-VLSDSEDEIIKKLALRVLREMLTNQP-ARL 365 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH-HHccchhhHHHHHHHHHHHHHHHhch-Hhh
Confidence 34444445444 457889999999999998832 2334455555 4444 889999998877766533332 223
Q ss_pred CchHHHHHHHHHHhcCCCCHHHH-----------------------------------HHHHHHhhcCCc----h---hh
Q 002911 91 LPEMILICQNLRNNLQHPNEYIR-----------------------------------GVTLRFLCRLNE----T---EI 128 (867)
Q Consensus 91 ~~EmiLv~NsL~KDL~~pNe~IR-----------------------------------glALr~Ls~I~~----~---el 128 (867)
.+..-+++-.+..--.++++-+. .++|+.+.++.. . .+
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~l 445 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNL 445 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence 23222333333322223322221 134434444321 1 23
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 129 IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 129 ~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
++.+.|.+++..++.++-|||.|++|+.-+|.
T Consensus 446 l~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 446 LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 34456666666666667777777777666666
No 119
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.35 E-value=23 Score=42.82 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=81.8
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHcCCCh----HHHHHHHHHHHhcCCChHH---HHHHHHHHHHHH---ccCCCHHHHHH
Q 002911 229 IRKVCRTNKGEKGKYIKIIISLLNAPST----AVIYECAGTLVSLSSAPTA---IRAAANTYSQLL---LSQSDNNVKLI 298 (867)
Q Consensus 229 l~~~~~~~p~~~~~li~~L~~lL~s~s~----aV~~eaa~tL~~Ls~~p~~---lk~aa~~li~ll---~~~sD~Nvk~i 298 (867)
+.++....|...-+=++.+..+|.|.+- +++-.||+....+..+++. .++-...+++++ +.++.|-+|+-
T Consensus 286 l~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtK 365 (1128)
T COG5098 286 LNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTK 365 (1128)
T ss_pred HHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 3444444555555566778888988764 5666788888888766532 233333444443 25778999999
Q ss_pred HHHHHHHHHhh---ChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCC
Q 002911 299 VLDRLNELRSS---HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 299 vL~~L~~L~~~---~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~ 346 (867)
+|..+..|... +|.-=++......++|.|...-|||.|+.+..+|...
T Consensus 366 alqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 366 ALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999998763 3333344555678899999999999999999887654
No 120
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.03 E-value=13 Score=40.39 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHH----HHHhheeccc-CCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhc--
Q 002911 293 NNVKLIVLDRLNELRSSHRDIMVD----LIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQS-- 365 (867)
Q Consensus 293 ~Nvk~ivL~~L~~L~~~~p~~l~~----~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~-- 365 (867)
...|+.+++.+..+..+++..++. ++..++.+.+ +.||--=....+++..+...=.+...++.|.+-+..|=-
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~ 175 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPIT 175 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeee
Confidence 456777777777777766655433 3333333333 446555555555555544433334444444432222100
Q ss_pred ---CCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcc
Q 002911 366 ---GELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK 428 (867)
Q Consensus 366 ---~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~ 428 (867)
...|...=-|.++..++..|-.--|..++++++.|++=|......+..|++..+...+.+|+.
T Consensus 176 F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 176 FRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred eeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 000111123466677777666555666778888888888887777778888888888877763
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=6.4 Score=48.44 Aligned_cols=135 Identities=21% Similarity=0.265 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCc------hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLNE------TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~------~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
+=.+|--.--+.||-+.+||-||+.|..+-+ ...-+-+.......|.|.++||-=+|+-++..+.. .+|+-+
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce--vy~e~i 803 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE--VYPEDI 803 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH--hcchhh
Confidence 3456667777889999999999999998754 33445577888899999999999999998887777 555322
Q ss_pred cchHHHHHHHHccCCCh------hHHHHHHHHHHhcchhhHHHH----HHHHhhhcCccchHHHHHHHHHHHHhhh
Q 002911 169 VDAPEMIEKVLSTEQDP------SAKRNAFLMLFTCDQDRAINY----LLTHVDRVSEWGELLQMVVLELIRKVCR 234 (867)
Q Consensus 169 ~d~~~ll~~lL~~D~D~------~v~~~A~~~L~ei~~~~al~~----L~~~l~~i~~~~p~lQ~~iL~ll~~~~~ 234 (867)
++++.+... +.++. ..++.|+.=+..-.-+....| +..++.-+.+++.-..+.-+..++.+|+
T Consensus 804 --l~dL~e~Y~-s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 804 --LPDLSEEYL-SEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred --HHHHHHHHH-hcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 234444332 22222 235555432222111112222 2233444445555446666666665554
No 122
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.96 E-value=2.1 Score=44.01 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh---hChhhHHHHHHhheecccCCCHHHHHHHHHHHhcc
Q 002911 276 IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS---SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 276 lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~---~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~L 343 (867)
++.-...++++. -+++..+|+.+++-+..+.+ .||.-.-| .++.+..||+++||.+|..++..+
T Consensus 6 ~Qryl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp---~lIAL~ts~~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 6 VQRYLKNILELC-LSSDDSVRLAALQVLELILRQGLVNPKQCVP---TLIALETSPNPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCChHHHHh---HhhhhhCCCChHHHHHHHHHHHHH
Confidence 344444455543 35677778887777777665 36654444 345455677777887777777654
No 123
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=91.95 E-value=26 Score=39.79 Aligned_cols=313 Identities=15% Similarity=0.161 Sum_probs=144.3
Q ss_pred ChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHH----HHHH---------H
Q 002911 144 HPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAIN----YLLT---------H 210 (867)
Q Consensus 144 ~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~----~L~~---------~ 210 (867)
..--+|-|.--+.+.|+ ++|++...+.+---. |..|.|.++++.|+.-|=..+.+.++. -|.+ +
T Consensus 37 ~~k~k~lasq~ip~~fk--~fp~la~~a~da~~d-~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~L 113 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFK--HFPSLADEAIDAQLD-LCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGL 113 (460)
T ss_pred chHHHHHHHHHHHHHHh--hCchhhhHHHHhhhc-cccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHH
Confidence 33456667777888888 788877766554434 247788888888887776666655432 2222 2
Q ss_pred hhhcCccchHHHHHHHHHHHH-hhhcCc-----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC-----CChHHHHHH
Q 002911 211 VDRVSEWGELLQMVVLELIRK-VCRTNK-----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS-----SAPTAIRAA 279 (867)
Q Consensus 211 l~~i~~~~p~lQ~~iL~ll~~-~~~~~p-----~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls-----~~p~~lk~a 279 (867)
+.++...++-+..+.+.+|+. +...-+ +.-..+++-+...|....-.=.--+...|..+. ..++.++.+
T Consensus 114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeL 193 (460)
T KOG2213|consen 114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQEL 193 (460)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHH
Confidence 233333455566666766653 222111 112234444555555433221111222222221 122334444
Q ss_pred HHHHHHHH----ccCCCHHH--HHHHHHHHH--HHHhhCh-hhHHHHH-Hhheec-ccCCCHHHHHHHHHHHhccCCC--
Q 002911 280 ANTYSQLL----LSQSDNNV--KLIVLDRLN--ELRSSHR-DIMVDLI-MDVLRA-LNSPNLDIRRKTLDIVLELITP-- 346 (867)
Q Consensus 280 a~~li~ll----~~~sD~Nv--k~ivL~~L~--~L~~~~p-~~l~~~~-~~il~~-L~d~d~~IR~kaLelL~~Lv~~-- 346 (867)
+.-.-++- +.-+|... |+|..-.+. -++..-| .-|-.|. ..++.. ..-....++..-|..+..|.+-
T Consensus 194 a~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tt 273 (460)
T KOG2213|consen 194 AEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTT 273 (460)
T ss_pred HHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccch
Confidence 43322221 12334332 333221111 1111111 1122221 122211 1111245666666666665543
Q ss_pred -----CcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHH--HH----HHHHcCCCc-cc--H
Q 002911 347 -----RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVH--LL----MDFLGDSNV-AS--A 412 (867)
Q Consensus 347 -----~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~--~L----l~lL~~~~~-~v--~ 412 (867)
.++..|++.|+.+.... +...+....|..-+..+.|.++.+-|+......+ .| .+.+....+ +. .
T Consensus 274 aq~a~q~Lpsi~elLk~yMpa~-kt~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~~~~ad~l~r~fq~y~K~t 352 (460)
T KOG2213|consen 274 AQAARQMLPSIVELLKEYMPAP-KTGEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLKDFRADYLARGFQEYIKKT 352 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CccHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhccchHHHHhhhhHHHHHHH
Confidence 34555666665443322 1000123456677778889999887775433322 11 122222211 11 1
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHhcccch-HhHHHHHhhHhhcc
Q 002911 413 IDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRA-ARVCTCALWIIGEY 460 (867)
Q Consensus 413 ~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~-~~v~~~alWiLGEY 460 (867)
.|.+....+.++..|..-..=++.|...+...+. ++.....+|++-.-
T Consensus 353 ~E~L~t~edqiKat~~klT~~is~l~Kal~~~k~~~e~~~~Li~~l~Q~ 401 (460)
T KOG2213|consen 353 GEALKTEEDQIKATALKLTQNISELIKALFHAKPDPEEEKQLIWTLVQN 401 (460)
T ss_pred HHHHHHHHHHHHHhhhhhhccHHHHHhhHhcCCCchhHHHHHHHHHHHh
Confidence 2344444445444333222335555555555553 57888889988654
No 124
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.89 E-value=1.5 Score=45.12 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=56.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHH--HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEP--LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~--L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
+.+.+-..+++..+|-.|++++..+-...++.| .+|.++.+..|+++++|+.|...+..++. +.|+++
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e--K~~s~v 80 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE--KHESLV 80 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH--HhHHHH
Confidence 344556678999999999999999888888877 58999999999999999999999998888 676544
No 125
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.89 E-value=13 Score=43.35 Aligned_cols=252 Identities=15% Similarity=0.107 Sum_probs=130.8
Q ss_pred ccchHHHHHHHHHHHHhhhcCc-----hhHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhcCCChHHHH-----HHHHHHH
Q 002911 216 EWGELLQMVVLELIRKVCRTNK-----GEKGKYIKIIISLLNAPS-TAVIYECAGTLVSLSSAPTAIR-----AAANTYS 284 (867)
Q Consensus 216 ~~~p~lQ~~iL~ll~~~~~~~p-----~~~~~li~~L~~lL~s~s-~aV~~eaa~tL~~Ls~~p~~lk-----~aa~~li 284 (867)
..+.+.+.....++..+....+ .....+.+.+...|.+.+ +..++-|+.++..+-..+.... ..+..++
T Consensus 112 ~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~ 191 (429)
T cd00256 112 RQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLV 191 (429)
T ss_pred CCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHH
Confidence 3467788888888888764322 223446667777777653 3455555666655433222111 1345566
Q ss_pred HHHccCC-CHHHHHHHHHHHHHHHhhChhh---H--HHHHHhheeccc-CCCHHHHHHHHHHHhccCCCC--------cH
Q 002911 285 QLLLSQS-DNNVKLIVLDRLNELRSSHRDI---M--VDLIMDVLRALN-SPNLDIRRKTLDIVLELITPR--------NI 349 (867)
Q Consensus 285 ~ll~~~s-D~Nvk~ivL~~L~~L~~~~p~~---l--~~~~~~il~~L~-d~d~~IR~kaLelL~~Lv~~~--------Nv 349 (867)
.+|-..+ +..+.|-++-.+-.+.- +++. + .+.+..+..++. .+-.-|-|-++.++.++++.. ..
T Consensus 192 ~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~ 270 (429)
T cd00256 192 KLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAA 270 (429)
T ss_pred HHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence 6664433 56788877777766642 1111 1 012233333433 334556667777777888743 11
Q ss_pred HHHHH-HHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc--cHHHHHH-HHHHHHcCCCcccHHHHHHHHHHHHHh
Q 002911 350 NEVVL-MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE--VASTVVH-LLMDFLGDSNVASAIDVIIFVREIIEM 425 (867)
Q Consensus 350 ~~IV~-~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~--~a~~~v~-~Ll~lL~~~~~~v~~evi~~l~~ii~~ 425 (867)
..+|. .+.+-+..-....+ .|++....+-.--..+..++.. ..+.|.. +....|.-+..+..+.-| ++=+.+
T Consensus 271 ~~mv~~~l~~~l~~L~~rk~-~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW---~EN~~k 346 (429)
T cd00256 271 LQMVQCKVLKTLQSLEQRKY-DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFW---RENADR 346 (429)
T ss_pred HHHHHcChHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHH---HHHHHH
Confidence 22222 22222221111111 2445444433332223322211 1233333 222344444334333333 222222
Q ss_pred CcccHHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHH
Q 002911 426 NPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIA 472 (867)
Q Consensus 426 ~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~ 472 (867)
..+-.-.++++|++.|+.-+++.+.+.|+.=||||+.+.|.....++
T Consensus 347 f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~ 393 (429)
T cd00256 347 LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVE 393 (429)
T ss_pred HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHH
Confidence 22223568999999997667788999999999999999987765544
No 126
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.56 E-value=32 Score=39.91 Aligned_cols=192 Identities=17% Similarity=0.199 Sum_probs=120.9
Q ss_pred HHHHHhcCCChH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCh--hhHHHHHHhheecc-cCCCHHHHHHHH
Q 002911 263 AGTLVSLSSAPT--AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR--DIMVDLIMDVLRAL-NSPNLDIRRKTL 337 (867)
Q Consensus 263 a~tL~~Ls~~p~--~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p--~~l~~~~~~il~~L-~d~d~~IR~kaL 337 (867)
...+..+.++-. ........++.+..+..++-.|..+++.+.-+..+++ +.+.+....+...+ +..+..-|..++
T Consensus 172 ~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 251 (415)
T PF12460_consen 172 SAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQAL 251 (415)
T ss_pred HHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHH
Confidence 344555543211 2344667777887788888889999999988887743 34555555555444 566778888999
Q ss_pred HHHhccC------CCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc-----------------HH
Q 002911 338 DIVLELI------TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV-----------------AS 394 (867)
Q Consensus 338 elL~~Lv------~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~-----------------a~ 394 (867)
+++.-++ +..-...+++.|..-+ .++++...+.++++.+..-++.+ ..
T Consensus 252 ~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL---------~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~ 322 (415)
T PF12460_consen 252 EILIWITKALVMRGHPLATELLDKLLELL---------SSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT 322 (415)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHh---------CChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH
Confidence 8875322 3444555666555322 14678888999988877553332 24
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCC
Q 002911 395 TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL-----RVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSL 464 (867)
Q Consensus 395 ~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l-----r~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~ 464 (867)
.+++.|++.....++......+..+..++++-|.- -..++.-|++.|+ ..++.++.+++-++-......
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~-~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLS-LPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHcC
Confidence 56666777777666666666788888898887742 1234555556553 345566777766665554443
No 127
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.53 E-value=14 Score=40.28 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHc-
Q 002911 329 NLDIRRKTLDIVLELITPR--NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLG- 405 (867)
Q Consensus 329 d~~IR~kaLelL~~Lv~~~--Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~- 405 (867)
....|....+++..+.+.. .+..+=..+..-+....++ |+|+.=--.+-+-+..+...|+. ....+-+.+.+.
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~c 170 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSC 170 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhh
Confidence 4567888888888776542 1111111111222223333 67777666666666667777764 444555555443
Q ss_pred -----------CCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccc---hHhHHHHHhhHhhccCCC--CCcHHH
Q 002911 406 -----------DSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIR---AARVCTCALWIIGEYCQS--LSEVEN 469 (867)
Q Consensus 406 -----------~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~---~~~v~~~alWiLGEY~~~--~~~i~~ 469 (867)
+.....+++....+++.+.-.|...+.++..|++.|.+-. -.+++....+++..|+.. .+-...
T Consensus 171 YFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~ 250 (262)
T PF14500_consen 171 YFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWST 250 (262)
T ss_pred eeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 1223466777889999998899999999999999997522 135788888888888642 223445
Q ss_pred HHHHHHH
Q 002911 470 GIATIKQ 476 (867)
Q Consensus 470 ~~~~i~~ 476 (867)
+|+.++.
T Consensus 251 iw~~lk~ 257 (262)
T PF14500_consen 251 IWNALKF 257 (262)
T ss_pred HHHHHHH
Confidence 5666654
No 128
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=5.2 Score=48.74 Aligned_cols=179 Identities=19% Similarity=0.190 Sum_probs=99.7
Q ss_pred HHHHHHHHHcC-CChHHHHHHHHHHHhcCCC-hHHHH-HHHHHHHHHHccC-CCHHHHHHHHHHHHHHHhhC--hhhHHH
Q 002911 243 YIKIIISLLNA-PSTAVIYECAGTLVSLSSA-PTAIR-AAANTYSQLLLSQ-SDNNVKLIVLDRLNELRSSH--RDIMVD 316 (867)
Q Consensus 243 li~~L~~lL~s-~s~aV~~eaa~tL~~Ls~~-p~~lk-~aa~~li~ll~~~-sD~Nvk~ivL~~L~~L~~~~--p~~l~~ 316 (867)
.++.|.+.+.+ +-..=+..|++.|=.++.. -..+- ....+++..|-.+ .|+++--++|+.+..+..+. |.+..+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 44444443333 3344566666666555421 00111 1224566655433 35666666677666655432 222111
Q ss_pred HHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCcc----
Q 002911 317 LIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV---- 392 (867)
Q Consensus 317 ~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~---- 392 (867)
- + .+ ..+-....+... -++.||.-++..+- +.|..+|...|+-|..+-..-|..
T Consensus 103 s-----~--qs--dd~g~~iae~fi--k~qd~I~lll~~~e-----------~~DF~VR~~aIqLlsalls~r~~e~q~~ 160 (970)
T KOG0946|consen 103 S-----T--QS--DDLGLWIAEQFI--KNQDNITLLLQSLE-----------EFDFHVRLYAIQLLSALLSCRPTELQDA 160 (970)
T ss_pred c-----h--hh--hHHHHHHHHHHH--cCchhHHHHHHHHH-----------hhchhhhhHHHHHHHHHHhcCCHHHHHH
Confidence 0 0 00 111222222222 36677776665442 246788988888887644332322
Q ss_pred ---HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHhcc
Q 002911 393 ---ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRV-----SIITRLLDNFYQ 443 (867)
Q Consensus 393 ---a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~-----~il~~L~~~L~~ 443 (867)
.+.-|..||++|.|+.+.+++|++.++.++++-+|..+. .+..+|+..++.
T Consensus 161 ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 161 LLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 245678899999999999999999999999998887653 355566666643
No 129
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.39 E-value=0.42 Score=54.50 Aligned_cols=135 Identities=19% Similarity=0.330 Sum_probs=82.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhC--CCCCCchhHHHHHhhcC------CCCcchHHHHHHHH--HHHhhcCC--C
Q 002911 20 NEIKEALEGNDVPAKVDAMKKAIMLLLN--GETLPQLFITIVRYVLP------SEDHTIQKLLLLYL--EIIDKTDA--K 87 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~--G~d~s~l~~~VIk~v~~------S~d~~lKkL~Ylyl--~~~~~~d~--d 87 (867)
+-||+.++..+...++.|-..++..+.. +..+...++..|..++. +.|.. +|=+.+|+ ....+... .
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~-~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWR-SKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HH-HHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHH-HHHHHHHHHHHHHhhhccccC
Confidence 4599999987766666655566654443 34455666666654443 45544 44444443 33322211 1
Q ss_pred C-----CCCchHHHHHHHHHHhcC---CCCHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002911 88 G-----RVLPEMILICQNLRNNLQ---HPNEYIRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHPYIRRNAILAV 155 (867)
Q Consensus 88 g-----~l~~EmiLv~NsL~KDL~---~pNe~IRglALr~Ls~I~---~~el~e~L~~~V~~~L~d~~pyVRK~A~lal 155 (867)
| .+.+-.=...+.+.-||+ +..|++|+.|++++...+ .++.+..++|.+.++|.+++.-|+-.|+.|+
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1 110111234556666777 667999999999999887 5778888999999999999999999999986
No 130
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=6.5 Score=47.33 Aligned_cols=140 Identities=17% Similarity=0.276 Sum_probs=94.0
Q ss_pred CchH--HHHHHHHHHhcCCCCHHHHHHHHHHhhc---CCchhh--------HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002911 91 LPEM--ILICQNLRNNLQHPNEYIRGVTLRFLCR---LNETEI--------IEPLIPSVLQNLQHRHPYIRRNAILAVMA 157 (867)
Q Consensus 91 ~~Em--iLv~NsL~KDL~~pNe~IRglALr~Ls~---I~~~el--------~e~L~~~V~~~L~d~~pyVRK~A~lal~k 157 (867)
.+|| .|.--.|-+-|+-||..||.+|+..+-. |+.|++ ++--...+.++|+|+-|-||..|+..+.|
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4777 4777788899999999999999987765 456665 33344556778999999999999999999
Q ss_pred hhccCCCcccccch--HHHHHHH---HccCCChhHHHHHHHHHHhcchh----hHHHHHHHHhhh-cCccchHHHHHHHH
Q 002911 158 IYKLPQGEQLLVDA--PEMIEKV---LSTEQDPSAKRNAFLMLFTCDQD----RAINYLLTHVDR-VSEWGELLQMVVLE 227 (867)
Q Consensus 158 I~~l~~~p~li~d~--~~ll~~l---L~~D~D~~v~~~A~~~L~ei~~~----~al~~L~~~l~~-i~~~~p~lQ~~iL~ 227 (867)
++. .+=.++|.. .+++.+. +..|+-..|+.+.|..|.++.-. .++.++...++- +.+..+-..+...+
T Consensus 247 ~~s--~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 247 ITS--KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred HHH--HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHH
Confidence 988 566677753 2333332 34677788888888877776322 124444333321 22333444555555
Q ss_pred HHHHh
Q 002911 228 LIRKV 232 (867)
Q Consensus 228 ll~~~ 232 (867)
++.++
T Consensus 325 ~ll~i 329 (1005)
T KOG1949|consen 325 MLLKI 329 (1005)
T ss_pred HHHHH
Confidence 55543
No 131
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.08 E-value=30 Score=43.45 Aligned_cols=234 Identities=17% Similarity=0.214 Sum_probs=130.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCCh--hHHHHHHHHHHhcchhhHHHHHHH
Q 002911 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDP--SAKRNAFLMLFTCDQDRAINYLLT 209 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~--~v~~~A~~~L~ei~~~~al~~L~~ 209 (867)
+..-+...--|.-|.||++|+..+.||.++ .+.. ....++..+..+++|+ +++-++-.++.+-..- -.
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l-~~~~---~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~--~s---- 542 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQL-QSHR---EAFSILCATINSEMDEKFSAVESLEDLNVSGKAP--SS---- 542 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-hccc---chHHHHHHhcCCccccchhHHHhchhhhhcccCc--cc----
Confidence 444455555689999999999999999885 3321 2345666655566665 3333332222211000 00
Q ss_pred HhhhcCccchHH---HHHHHHHHHHhhh-cCchhHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhcCC--ChHHHHHHHHH
Q 002911 210 HVDRVSEWGELL---QMVVLELIRKVCR-TNKGEKGKYIKIIISLLNAPST-AVIYECAGTLVSLSS--APTAIRAAANT 282 (867)
Q Consensus 210 ~l~~i~~~~p~l---Q~~iL~ll~~~~~-~~p~~~~~li~~L~~lL~s~s~-aV~~eaa~tL~~Ls~--~p~~lk~aa~~ 282 (867)
++ ....+|+ |..+++.=.+... .+....+.++..|...++..++ .|...|.+.+.+.-. +.+.....+.-
T Consensus 543 --~~-~~tt~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~ 619 (1529)
T KOG0413|consen 543 --KT-KKTTDLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLS 619 (1529)
T ss_pred --cc-ccchhhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHH
Confidence 00 0111221 2223333111111 1111123344444445553333 477777766665432 23334444456
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH---HHHHhheecccCCCHHHHHHHHHHHhccCCC--CcHHHHHHHHH
Q 002911 283 YSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV---DLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNINEVVLMLK 357 (867)
Q Consensus 283 li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~---~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~--~Nv~~IV~~L~ 357 (867)
+++.+..+.-..+|--+++.|.++....|.+++ ....-+..+++|.+..+-.+|+.++.++..+ .|-.++-=.|+
T Consensus 620 iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL 699 (1529)
T KOG0413|consen 620 ILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLL 699 (1529)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHH
Confidence 677788777788899999999999989998883 2334455568899999999999999988776 33333333444
Q ss_pred HHHHHhhcCCccCCHHHHHHHHHHHHHhH
Q 002911 358 KEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 358 kel~~~~~~~~d~d~e~r~~lI~aI~~la 386 (867)
.++..+. .-++.+..+.|.-.
T Consensus 700 ~~i~~~~--------~~s~yl~~~~h~w~ 720 (1529)
T KOG0413|consen 700 DTIESVT--------NHSQYLMSTLHDWV 720 (1529)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHH
Confidence 4443322 25566666666543
No 132
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.05 E-value=1.3 Score=40.73 Aligned_cols=66 Identities=9% Similarity=0.237 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhhe----ecccCCCHHHHHHHHHHHh
Q 002911 274 TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVL----RALNSPNLDIRRKTLDIVL 341 (867)
Q Consensus 274 ~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il----~~L~d~d~~IR~kaLelL~ 341 (867)
..+..+..+++..+ .++|+.|||.+.+.|..+....+..+-+|..+|+ +...|+|+.||.-| ++|-
T Consensus 23 ~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld 92 (97)
T PF12755_consen 23 KYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLD 92 (97)
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHH
Confidence 45666777777665 7889999999999999998766665555655555 55689999998876 4443
No 133
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=30 Score=38.52 Aligned_cols=306 Identities=12% Similarity=0.157 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHH-HHhhcCCCCCCCchHHHHHH-HHHHhc----CCC
Q 002911 35 VDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLE-IIDKTDAKGRVLPEMILICQ-NLRNNL----QHP 108 (867)
Q Consensus 35 ~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~-~~~~~d~dg~l~~EmiLv~N-sL~KDL----~~p 108 (867)
...+.++.. .+.|-.+-.-+|.+.+-=+-.++-.+|-|..--.. ++..+ |.+-..|..+++| -+.|-+ -..
T Consensus 64 VscLERLfk-akegahlapnlmpdLQrGLiaddasVKiLackqigcilEdc--DtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 64 VSCLERLFK-AKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDC--DTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHh-hccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcC--chhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 455666544 44565554445555442223455555554433222 23223 3223466777776 455543 567
Q ss_pred CHHHHHHHHHHhhcCC-chhhHHHHHHH-------HHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch-----HHHH
Q 002911 109 NEYIRGVTLRFLCRLN-ETEIIEPLIPS-------VLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-----PEMI 175 (867)
Q Consensus 109 Ne~IRglALr~Ls~I~-~~el~e~L~~~-------V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~-----~~ll 175 (867)
|..+--.|+.++.+|. .|.-++.+.++ .++..-..+..+|-+..--+.+|+. .+|...... .+++
T Consensus 141 ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifS--iSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFS--ISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHh--cCHHHHhHhhhhhHHHHH
Confidence 8888889999999884 56666655542 2222233467888888999999999 677655432 3455
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHhhhcCccchHHHHHH----HHHHHHhhhcC--ch-
Q 002911 176 EKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDRVSEWGELLQMVV----LELIRKVCRTN--KG- 238 (867)
Q Consensus 176 ~~lL~~D~D~~v~~~A~~~L~ei~~~~----------al~~L~~~l~~i~~~~p~lQ~~i----L~ll~~~~~~~--p~- 238 (867)
+.-|..-.|..|+.+.+.+..++.... -++.+++++. -.+.+||-.... .+++++.+..+ |+
T Consensus 219 eaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIs-GadsdPfekfralmgfgkffgkeaimdvseea 297 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIIS-GADSDPFEKFRALMGFGKFFGKEAIMDVSEEA 297 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhh-CCCCCcHHHHHHHHHHHHHhcchHHhhcCHHH
Confidence 544545588899999999888764321 2444555443 245788765543 34444443333 21
Q ss_pred hHHH---HHHHHHHHHcCCChHHHHHHHHHHHhcCCChH---HHHH----HHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 239 EKGK---YIKIIISLLNAPSTAVIYECAGTLVSLSSAPT---AIRA----AANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 239 ~~~~---li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~---~lk~----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
..+. +++-..+.+.+.++.-.-.|+.++..+.++.+ .+.. ++..++-.....+-+--+..++..|..|..
T Consensus 298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 1233 34555667777888777778888888765422 1111 233333333333322234444555544432
Q ss_pred h---Chh--------------hH----H----HHHHhheecccCCCHHHHHHHHHHHhccCCC
Q 002911 309 S---HRD--------------IM----V----DLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 309 ~---~p~--------------~l----~----~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~ 346 (867)
. .|+ .+ + +-..-|+.+++.|-++|+..++..+..+++.
T Consensus 378 elrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 378 ELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred cccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 0 110 01 1 1122355667888899999999998887764
No 134
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=90.65 E-value=76 Score=42.68 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHH
Q 002911 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLS--SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLI 318 (867)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls--~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~ 318 (867)
..++.....+|.|..+.|+-=++.....+- -+.-.-+.+...++..+.+.++.+|. .+|+.|..|...+|..+.+|.
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~~fa 512 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQPFA 512 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHHHHH
Confidence 456777778888888876544444433331 12213456778888888788888886 789999999999999887754
Q ss_pred Hh---heecccCCC-HHHHHHHHHHHhccC
Q 002911 319 MD---VLRALNSPN-LDIRRKTLDIVLELI 344 (867)
Q Consensus 319 ~~---il~~L~d~d-~~IR~kaLelL~~Lv 344 (867)
.. ++..+++=. ..||+ ..+++..|+
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~-lf~il~~La 541 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRK-LFDILCTLA 541 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHH-HHHHHHHHh
Confidence 44 444444433 34444 477777766
No 135
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.34 E-value=1.7 Score=52.34 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC-hhhH-HHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHH
Q 002911 275 AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH-RDIM-VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEV 352 (867)
Q Consensus 275 ~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~-p~~l-~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~I 352 (867)
.-+.+..+++++| +..|.-+|..-|+++.+....- ++.+ ......+...+.|.|..+|-.++..+..|+..=|-..+
T Consensus 327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 3445667777766 7899999999999999887642 2222 23344455678899999999999887777655554455
Q ss_pred HHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc
Q 002911 353 VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI 387 (867)
Q Consensus 353 V~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~ 387 (867)
=.+|++++.+++. |.+...|..-.-.+|.++.
T Consensus 406 n~Ellr~~ar~q~---d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 406 NGELLRYLARLQP---DEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred cHHHHHHHHhhCc---cccCcccccceeeeccccc
Confidence 5688889888765 5567788777777777764
No 136
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=3.9 Score=49.42 Aligned_cols=224 Identities=17% Similarity=0.179 Sum_probs=126.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHH--HHHHHhhcCCCCCCCchHHH
Q 002911 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLL--YLEIIDKTDAKGRVLPEMIL 96 (867)
Q Consensus 19 ~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Yl--yl~~~~~~d~dg~l~~EmiL 96 (867)
.+.+|+.|...+ -.--+|----+-+.|.|.--+.++-+...|.-.++.-.++|=+=+ ++..| | ++| .
T Consensus 451 Ye~lKevLy~D~-AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~y------g--rqe--~ 519 (929)
T KOG2062|consen 451 YEKLKEVLYNDS-AVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVY------G--RQE--D 519 (929)
T ss_pred HHHHHHHHhccc-hhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHh------h--hhh--h
Confidence 355666666543 222344434566788898888888888887644555556554433 33333 2 122 2
Q ss_pred HHHHHHHhcCCCCHHHHHHHH--HHhhcCCc--hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchH
Q 002911 97 ICQNLRNNLQHPNEYIRGVTL--RFLCRLNE--TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP 172 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglAL--r~Ls~I~~--~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~ 172 (867)
+=+-+..-+.+.+|..|.... +.|+..++ -..+..|.+. ...|.+.-|||.|+.|++=+.- .+|+..|...
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~---aVsD~nDDVrRaAVialGFVl~--~dp~~~~s~V 594 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLF--RDPEQLPSTV 594 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcc---cccccchHHHHHHHHHheeeEe--cChhhchHHH
Confidence 223344445566888884332 23333333 3333333321 2468899999999999998877 7888776544
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhh----HHHHHHHHhhhcCccchHH-HHHHHHHHHHhhhcCchh---HHHHH
Q 002911 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----AINYLLTHVDRVSEWGELL-QMVVLELIRKVCRTNKGE---KGKYI 244 (867)
Q Consensus 173 ~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~----al~~L~~~l~~i~~~~p~l-Q~~iL~ll~~~~~~~p~~---~~~li 244 (867)
++ |...-||.|+..|..+|.-.|... |+..|-.+.. +...|. |-.++-+-..++..++.. ...|.
T Consensus 595 ~l----Lses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr 667 (929)
T KOG2062|consen 595 SL----LSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFR 667 (929)
T ss_pred HH----HhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence 33 446778999999999998776543 4555544433 333443 444444444444444332 23344
Q ss_pred HHHHHHHcCC--ChHHHHHHHHH
Q 002911 245 KIIISLLNAP--STAVIYECAGT 265 (867)
Q Consensus 245 ~~L~~lL~s~--s~aV~~eaa~t 265 (867)
+.+.+++... +..+.|.|+.+
T Consensus 668 k~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 668 KQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455544443 33455655544
No 137
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.52 E-value=53 Score=39.17 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=86.2
Q ss_pred HHHHHHHHHc--c--------CCCHHHHHHHHHHHHHH--Hh-hChhhHHHHHHhheecccCC--CHHHHHHHHHHH---
Q 002911 279 AANTYSQLLL--S--------QSDNNVKLIVLDRLNEL--RS-SHRDIMVDLIMDVLRALNSP--NLDIRRKTLDIV--- 340 (867)
Q Consensus 279 aa~~li~ll~--~--------~sD~Nvk~ivL~~L~~L--~~-~~p~~l~~~~~~il~~L~d~--d~~IR~kaLelL--- 340 (867)
.+..+..++. . .-++.+|.-.|..|.+= +. ..|..++ -+..+|.++ +.-+|..++..+
T Consensus 273 ~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~----i~~~~l~~~~~~~klk~~~l~F~~~~ 348 (501)
T PF13001_consen 273 LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQ----IVFDGLYSDNTNSKLKSLALQFIRGS 348 (501)
T ss_pred HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHH----HHhccccCCccccccchhcchhhhcc
Confidence 4455666665 2 23466666666666552 11 2343332 345577777 556666676766
Q ss_pred hc---cCCCCcHHHHHHHHHHHHHHhhc-----CCccCCHHHHHHHHHHHHHhHccCCccH---HHHHHHHHHHHcCCCc
Q 002911 341 LE---LITPRNINEVVLMLKKEVVKTQS-----GELEKNGEYRQMLIQAIHSCAIKFPEVA---STVVHLLMDFLGDSNV 409 (867)
Q Consensus 341 ~~---Lv~~~Nv~~IV~~L~kel~~~~~-----~~~d~d~e~r~~lI~aI~~la~kf~~~a---~~~v~~Ll~lL~~~~~ 409 (867)
.. -+++.-+..+-+.|..++.+..+ .....+.+.|...-.+||.++.+.|... -.++..|++-|.+..+
T Consensus 349 ~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~ 428 (501)
T PF13001_consen 349 SWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESP 428 (501)
T ss_pred hHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcch
Confidence 33 23333344444444444433331 1123468899999999999999988754 3677788887876666
Q ss_pred ccHHHHHHHHHHHHHhCcc
Q 002911 410 ASAIDVIIFVREIIEMNPK 428 (867)
Q Consensus 410 ~v~~evi~~l~~ii~~~p~ 428 (867)
.++..+-..+..++..++.
T Consensus 429 evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 429 EVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6665555566666555444
No 138
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.41 E-value=23 Score=42.09 Aligned_cols=71 Identities=11% Similarity=0.194 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch-HHHHHHHH--ccCCChhHHHHHHHHHHhc
Q 002911 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-PEMIEKVL--STEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 126 ~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~-~~ll~~lL--~~D~D~~v~~~A~~~L~ei 198 (867)
.+++++.+..+.+.++++.-.||++.+--+..+.. .-.+.-++. ..++++++ .-|..+.|++.|+.+|+..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d--~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD--VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 56888889999999999999999998877776655 211111111 11222221 1366677777777776643
No 139
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.39 E-value=7.5 Score=43.19 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=85.6
Q ss_pred HhheecccCCCHHHHHHHHHHHhccCCCC---cHH---HHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc--CC
Q 002911 319 MDVLRALNSPNLDIRRKTLDIVLELITPR---NIN---EVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK--FP 390 (867)
Q Consensus 319 ~~il~~L~d~d~~IR~kaLelL~~Lv~~~---Nv~---~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k--f~ 390 (867)
..+++.+..+|.+|+.+++.++..++... ... ++++.+.+.+....+ ..+.+++..+++++..+... |-
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~---~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLS---SSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT----HHHH---HHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhc---CCCcchHHHHHHHHHHHhCcchhH
Confidence 34667888899999999999999886543 333 566666666554322 23457888889999887632 21
Q ss_pred cc--HHHHHHHHHHHHc------CC-CcccHHHHHHHHH------HHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhh
Q 002911 391 EV--ASTVVHLLMDFLG------DS-NVASAIDVIIFVR------EIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALW 455 (867)
Q Consensus 391 ~~--a~~~v~~Ll~lL~------~~-~~~v~~evi~~l~------~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alW 455 (867)
.. ....+..+++++. .. +-...++++..+= ++++...+ ..++..|++.+....-.++.|.+++
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~--~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK--KYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT--TSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc--cchHHHHHHHHHhcccchHHHHHHH
Confidence 11 2577888888882 11 1234445443222 22221111 1278899999888777799999999
Q ss_pred HhhccCCCCC
Q 002911 456 IIGEYCQSLS 465 (867)
Q Consensus 456 iLGEY~~~~~ 465 (867)
++-...+..+
T Consensus 263 ~l~Nl~~~~~ 272 (312)
T PF03224_consen 263 ILRNLLSKAP 272 (312)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHHHhccH
Confidence 9998877766
No 140
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=7.6 Score=43.49 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=75.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhcCC-ChHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHH-
Q 002911 245 KIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDL- 317 (867)
Q Consensus 245 ~~L~~lL~s~s~aV~~eaa~tL~~Ls~-~p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~- 317 (867)
..+...++++++.|+--||+++.+... +|..-.. +..+++..|.++.+..+|--+|-++..+...++.....+
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344447899999999999999998854 4532221 346788888877778889999999999988777654332
Q ss_pred ----HHhheecccC--CCHHHHHHHHHHHhccCCCCcH
Q 002911 318 ----IMDVLRALNS--PNLDIRRKTLDIVLELITPRNI 349 (867)
Q Consensus 318 ----~~~il~~L~d--~d~~IR~kaLelL~~Lv~~~Nv 349 (867)
...+..++.+ .+.-.++|++.++..++.+...
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 1223456666 6778889999999877654433
No 141
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.76 E-value=42 Score=35.78 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhHccCCccHHHHHHHHHHHH-cCCCcccHHHHHHHHHHHHH
Q 002911 374 YRQMLIQAIHSCAIKFPEVASTVVHLLMDFL-GDSNVASAIDVIIFVREIIE 424 (867)
Q Consensus 374 ~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL-~~~~~~v~~evi~~l~~ii~ 424 (867)
..-....+++.++...|.....++..+..+| .+.++.+..-++..+..+.+
T Consensus 100 ~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 100 CLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3333446889999999998889999999999 67766666667777777764
No 142
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.62 E-value=9.5 Score=47.46 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcCC--chhhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChh
Q 002911 110 EYIRGVTLRFLCRLN--ETEIIEPLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPS 186 (867)
Q Consensus 110 e~IRglALr~Ls~I~--~~el~e~L~~~V~~~L~d~-~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~ 186 (867)
+.+|+-+.-+|+++. ...++.-++|.+.+-|+.. ..-||-|-++|+.-+.. .+.-.+..+.+.|...| .|+++.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~--~YTam~d~YiP~I~~~L-~Dp~~i 1021 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICS--SYTAMTDRYIPMIAASL-CDPSVI 1021 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHH--HHHHHHHHhhHHHHHHh-cCchHH
Confidence 689999999999975 6788888899988888764 56799999999988887 66555555666676666 899999
Q ss_pred HHHHHHHHHHhcchhh
Q 002911 187 AKRNAFLMLFTCDQDR 202 (867)
Q Consensus 187 v~~~A~~~L~ei~~~~ 202 (867)
|++.+|..|..+-+..
T Consensus 1022 VRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQFG 1037 (1529)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998776543
No 143
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.47 E-value=63 Score=37.51 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch----HHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002911 128 IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA----PEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 128 l~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~----~~ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
+-..++..+..++.+++|.-|...-..+.+||. ..+.+.+.. .+.+.+++.....+.++...+..|..+-
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~--k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYG--KFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHH--H-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 444567777889999999999999999999998 677665543 3455555545566666777777766653
No 144
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.41 E-value=32 Score=39.53 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHhhHhhccCCCCCcHHHHHHH
Q 002911 430 RVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIAT 473 (867)
Q Consensus 430 r~~il~~L~~~L~~i~~~~v~~~alWiLGEY~~~~~~i~~~~~~ 473 (867)
+-.+++.|+..|+.-.+|.++++|+.=||||..+.|.+..+++.
T Consensus 364 nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k 407 (442)
T KOG2759|consen 364 NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEK 407 (442)
T ss_pred cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHH
Confidence 45789999999998888999999999999999999987665544
No 145
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=87.25 E-value=4.6 Score=41.81 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=71.6
Q ss_pred hcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCC--HHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 002911 62 VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPN--EYIRGVTLRFLCRLNETEIIEPLIPSVLQN 139 (867)
Q Consensus 62 v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pN--e~IRglALr~Ls~I~~~el~e~L~~~V~~~ 139 (867)
+..+..++.|-++++++....+..+ ++ ....+.+-+.+-+ ..+=+++-+.++.+.... +.+.+.+.+.
T Consensus 59 L~~~~~~E~~~la~~il~~~~~~~~-----~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W 128 (213)
T PF08713_consen 59 LWESGYREERYLALLILDKRRKKLT-----EE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKW 128 (213)
T ss_dssp HHCSSCHHHHHHHHHHHHHCGGG-------HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHhHHHhhhhh-----HH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHH
Confidence 4455666666666666544321110 01 2344444444432 223344455566553322 4456677778
Q ss_pred cCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc---hhhHHHHHHH
Q 002911 140 LQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD---QDRAINYLLT 209 (867)
Q Consensus 140 L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~---~~~al~~L~~ 209 (867)
+.+.++++||.|+.++.+.+. . .-.+...+++...+ .|.+..|+-+.--+|.++. |+...+||..
T Consensus 129 ~~s~~~w~rR~~~v~~~~~~~--~--~~~~~~l~~~~~~~-~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVMLLRYIR--K--EDFDELLEIIEALL-KDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHCSSHHHHHHHHHCTTTHGG--G--CHHHHHHHHHHHCT-TGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHH--h--cCHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 888888888888888877666 3 11223344554433 6667777666666666664 3344555544
No 146
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=7.6 Score=43.48 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=64.7
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhccCCCcccccch-----HHHHHHHHccCCChhHHHHHHHHHHhcchhh--H------
Q 002911 137 LQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--A------ 203 (867)
Q Consensus 137 ~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~-----~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~--a------ 203 (867)
...++|.++-||+.|+..++.+.+ ..|..-..+ ...+-..|..+.+..++..|+.+++.+-... +
T Consensus 130 l~~l~~~~~~lR~~Aa~Vigt~~q--NNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~ 207 (342)
T KOG2160|consen 130 LGYLENSDAELRELAARVIGTAVQ--NNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK 207 (342)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 337888999999999999999998 777554332 2333344556777778888888877653322 1
Q ss_pred ---HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhH
Q 002911 204 ---INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK 240 (867)
Q Consensus 204 ---l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~ 240 (867)
..-|..++.. +..+.-+|.+++.++..+...+++..
T Consensus 208 ~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 208 LNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred cCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 2223334332 23566778888888888776655443
No 147
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.78 E-value=27 Score=42.69 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=92.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHhhc-CCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHH
Q 002911 100 NLRNNLQHPNEYIRGVTLRFLCR-LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKV 178 (867)
Q Consensus 100 sL~KDL~~pNe~IRglALr~Ls~-I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~l 178 (867)
++-.+-||. -.+||+|+-.-.- ....|-++ |-|.+.+.|.+|..|...++++.--|- -... -..+..++.-.
T Consensus 491 ~Ya~ETQHe-ki~RGl~vGiaL~~ygrqe~Ad---~lI~el~~dkdpilR~~Gm~t~alAy~--GTgn-nkair~lLh~a 563 (929)
T KOG2062|consen 491 TYAQETQHE-KIIRGLAVGIALVVYGRQEDAD---PLIKELLRDKDPILRYGGMYTLALAYV--GTGN-NKAIRRLLHVA 563 (929)
T ss_pred HHhhhhhHH-HHHHHHHHhHHHHHhhhhhhhH---HHHHHHhcCCchhhhhhhHHHHHHHHh--ccCc-hhhHHHhhccc
Confidence 444566665 4677777654332 23344344 456788899999999999988887776 2111 11223455433
Q ss_pred HccCCChhHHHHHHHHHHhcc---hhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCC
Q 002911 179 LSTEQDPSAKRNAFLMLFTCD---QDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPS 255 (867)
Q Consensus 179 L~~D~D~~v~~~A~~~L~ei~---~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s 255 (867)
.+|.|-.|+|+|..+|.=++ |+....+ ...|.+ +.+|......-=.++..|.... ...-+++|.++.....
T Consensus 564 -VsD~nDDVrRaAVialGFVl~~dp~~~~s~-V~lLse--s~N~HVRyGaA~ALGIaCAGtG--~~eAi~lLepl~~D~~ 637 (929)
T KOG2062|consen 564 -VSDVNDDVRRAAVIALGFVLFRDPEQLPST-VSLLSE--SYNPHVRYGAAMALGIACAGTG--LKEAINLLEPLTSDPV 637 (929)
T ss_pred -ccccchHHHHHHHHHheeeEecChhhchHH-HHHHhh--hcChhhhhhHHHHHhhhhcCCC--cHHHHHHHhhhhcChH
Confidence 48999999999999998764 3332222 333332 4667766655555666665432 1234566666667666
Q ss_pred hHHHHHHHHH
Q 002911 256 TAVIYECAGT 265 (867)
Q Consensus 256 ~aV~~eaa~t 265 (867)
.-|+..|..+
T Consensus 638 ~fVRQgAlIa 647 (929)
T KOG2062|consen 638 DFVRQGALIA 647 (929)
T ss_pred HHHHHHHHHH
Confidence 6677666544
No 148
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.73 E-value=2.7 Score=38.24 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=44.6
Q ss_pred heecccCCCHHHHHHHHHHHhccCCCCc-----HHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHH
Q 002911 321 VLRALNSPNLDIRRKTLDIVLELITPRN-----INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAST 395 (867)
Q Consensus 321 il~~L~d~d~~IR~kaLelL~~Lv~~~N-----v~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~ 395 (867)
.+.-|+||.+-||-.+|..|.+|+.+++ +..|+..++..+. |.|+.+=-.+|+.+..+|..||. .
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~-------d~DsyVYL~aI~~L~~La~~~p~---~ 77 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLK-------DEDSYVYLNAIKGLAALADRHPD---E 77 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcC-------CCCchHHHHHHHHHHHHHHHChH---H
Confidence 3445678888888888888888776665 3333333332221 33445555666666666666654 4
Q ss_pred HHHHHHHHHcC
Q 002911 396 VVHLLMDFLGD 406 (867)
Q Consensus 396 ~v~~Ll~lL~~ 406 (867)
+++.|++...+
T Consensus 78 vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 VLPILLDEYAD 88 (92)
T ss_pred HHHHHHHHHhC
Confidence 55555554443
No 149
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.65 E-value=89 Score=39.28 Aligned_cols=230 Identities=12% Similarity=0.123 Sum_probs=128.5
Q ss_pred HHHHHHcC-CChHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002911 246 IIISLLNA-PSTAVIYECAGTLVSLSSA----PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (867)
Q Consensus 246 ~L~~lL~s-~s~aV~~eaa~tL~~Ls~~----p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~ 320 (867)
.+...+.+ ..|....-+..++...+.. |+.+.......+..+..+..+-+|.-+++++.-.. .++++++....
T Consensus 453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ 530 (1005)
T KOG2274|consen 453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPM 530 (1005)
T ss_pred HHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchH
Confidence 33343333 4566555566666655432 34444444444555555555667777777666554 45555554444
Q ss_pred heecc----cCCCHHHHHHHHHHHhccCC------CCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCC
Q 002911 321 VLRAL----NSPNLDIRRKTLDIVLELIT------PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP 390 (867)
Q Consensus 321 il~~L----~d~d~~IR~kaLelL~~Lv~------~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~ 390 (867)
|++.| .....++--.-.+.|..+|+ ..+=..|..++..-+.++.+. ..-....+.+++.+.+.+..|.
T Consensus 531 ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D--P~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 531 ILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED--PQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhc
Confidence 44443 22233343333344443332 223334555555555565430 1123466888999999999999
Q ss_pred ccHHHHHHHHHHHHcCCC----cccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHhccc-----------chHhHHHHHh
Q 002911 391 EVASTVVHLLMDFLGDSN----VASAIDVIIFVREIIEMNP-KLRVSIITRLLDNFYQI-----------RAARVCTCAL 454 (867)
Q Consensus 391 ~~a~~~v~~Ll~lL~~~~----~~v~~evi~~l~~ii~~~p-~lr~~il~~L~~~L~~i-----------~~~~v~~~al 454 (867)
+....+++.++..+...+ .....-++.++.-++++-| .+-..++..++...-.+ ..++.+|+.+
T Consensus 609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 999999999999998776 3334445677777777644 34444444444433221 1356777777
Q ss_pred hH----hhccCCCCC-cHHHHHHHHHHhhC
Q 002911 455 WI----IGEYCQSLS-EVENGIATIKQCLG 479 (867)
Q Consensus 455 Wi----LGEY~~~~~-~i~~~~~~i~~~l~ 479 (867)
-. +-++..... +..++++.+.+.+.
T Consensus 689 s~~~eq~~t~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 689 SVTLEQLLTWHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred hcCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence 66 555544332 23467777776665
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=86.30 E-value=26 Score=36.04 Aligned_cols=146 Identities=21% Similarity=0.291 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhccCC-Cc--------ccccch--------HHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHH
Q 002911 147 IRRNAILAVMAIYKLPQ-GE--------QLLVDA--------PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLT 209 (867)
Q Consensus 147 VRK~A~lal~kI~~l~~-~p--------~li~d~--------~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~ 209 (867)
||-.|+.|+..+.+ . ++ .++|+. +.++.- +..|.++.|+.+|+.+|..+-.. .-+||..
T Consensus 2 vR~~Al~~L~al~k--~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~-il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~ 77 (182)
T PF13251_consen 2 VRQAALQCLQALAK--STDKRSLFGYWPALLPDSVLQGRPATPSLLTC-ILKDPSPKVRAAAASALAALLEG-SKPFLAQ 77 (182)
T ss_pred hhHHHHHHHHHHHH--hcCCceeHhhHHHHCCCCCCcCCCCCcchhHH-HHcCCchhHHHHHHHHHHHHHHc-cHHHHHH
Confidence 67778877777777 4 22 223332 346654 45899999999999998877554 2456554
Q ss_pred Hhhh---cCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCC-ChHHHHHHHHHH---HhcCCC----hHHHHH
Q 002911 210 HVDR---VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAP-STAVIYECAGTL---VSLSSA----PTAIRA 278 (867)
Q Consensus 210 ~l~~---i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~-s~aV~~eaa~tL---~~Ls~~----p~~lk~ 278 (867)
.-+. -..+.++.+.-. ..+. .+-+.|...|+.. ++.+.-++.+++ +.-++. +..+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa-~~i~-----------~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~ 145 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLA-SMIM-----------ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTE 145 (182)
T ss_pred HHhcCCCCCCcccHHHHHH-HHHH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHH
Confidence 3321 123444432211 1111 1224455555554 444555544444 444442 344555
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhh
Q 002911 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (867)
Q Consensus 279 aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~ 309 (867)
.+..+..+ +.+.|+|++-.+|-.+..+...
T Consensus 146 ~v~~v~~~-l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 146 VVTQVRPL-LRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHH-HhcCCCcHHHHHHHHHHHHHcC
Confidence 55554444 4679999999998888887654
No 151
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.27 E-value=9.5 Score=44.12 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCC-CChHHHHHHHHHHHHhhccCCCcccccchHH-HHHHHHc--cCCChhHHHHHHH----HHHhcchh
Q 002911 130 EPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLLVDAPE-MIEKVLS--TEQDPSAKRNAFL----MLFTCDQD 201 (867)
Q Consensus 130 e~L~~~V~~~L~d-~~pyVRK~A~lal~kI~~l~~~p~li~d~~~-ll~~lL~--~D~D~~v~~~A~~----~L~ei~~~ 201 (867)
..+...+.+.|.+ .++..||-|.--+.++.+ ..|.-..|..+ .+.++|. .|++..|++.|-. .|..+.|.
T Consensus 328 ~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~--~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 328 AEILLLLLEVLSDSEDEIIKKLALRVLREMLT--NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHH--hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 3455677888888 888899999999999999 77777666544 3455553 6777778776654 45556676
Q ss_pred hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCc-hh----HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 002911 202 RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK-GE----KGKYIKIIISLLNAPSTAVIYECAGTLVSL 269 (867)
Q Consensus 202 ~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p-~~----~~~li~~L~~lL~s~s~aV~~eaa~tL~~L 269 (867)
.++.-+..++-. .|+-.-+.+|+++.+++..=+ ++ ..++..++.+--+|.++.|+-+|+-+|+.+
T Consensus 406 ~~I~~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 406 QCIVNISPLILT---ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred hHHHHHhhHHhc---CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 666555554422 233335678888888764322 22 345566677777788888998888888775
No 152
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.12 E-value=25 Score=39.06 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhc-chhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHH
Q 002911 186 SAKRNAFLMLFTC-DQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAG 264 (867)
Q Consensus 186 ~v~~~A~~~L~ei-~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~ 264 (867)
.+...-+.+|..+ ..+..++|+..+++++-..+|- ..+++..+...++.. .+..+..++++.+..+...|+.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~----~~~~~~~~~~~~~~~---~~~~fl~ll~~~D~~i~~~a~~ 127 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS----RVELFLELAKQDDSD---PYSPFLKLLDRNDSFIQLKAAF 127 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSS----SHHHHHHHHH-TTH-----HHHHHHH-S-SSHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHhcccccch---hHHHHHHHhcCCCHHHHHHHHH
Confidence 4444445556666 5555677766666654333331 222233333222221 4455556778888888888888
Q ss_pred HHHhcCCC-h----HHHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHh
Q 002911 265 TLVSLSSA-P----TAIRAAANTYSQLLLS---QSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 265 tL~~Ls~~-p----~~lk~aa~~li~ll~~---~sD~Nvk~ivL~~L~~L~~ 308 (867)
.+..+... + ...+.+...+++.+.+ .++.++.+++++.|..|..
T Consensus 128 iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 128 ILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 88776321 1 1122455566655533 3456677888888888874
No 153
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.02 E-value=44 Score=35.64 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHHhhChhhHHHHHHhheecc-cCCCHHHHHHHHHHHhccCC
Q 002911 300 LDRLNELRSSHRDIMVDLIMDVLRAL-NSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 300 L~~L~~L~~~~p~~l~~~~~~il~~L-~d~d~~IR~kaLelL~~Lv~ 345 (867)
-..+..+....|+--.+.+..+-.+| .+.+..++..+++.+..++.
T Consensus 105 a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 105 AASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 34556666677775555566666677 78889999999999999993
No 154
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=12 Score=46.24 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=90.0
Q ss_pred chHHHHHHHH-HHHHhhhcCchh-----HHHHHHHHHHHHcCCC-hHHHHHHHHHHHhcCC-ChH---H-HH-HHHHHHH
Q 002911 218 GELLQMVVLE-LIRKVCRTNKGE-----KGKYIKIIISLLNAPS-TAVIYECAGTLVSLSS-APT---A-IR-AAANTYS 284 (867)
Q Consensus 218 ~p~lQ~~iL~-ll~~~~~~~p~~-----~~~li~~L~~lL~s~s-~aV~~eaa~tL~~Ls~-~p~---~-lk-~aa~~li 284 (867)
+|..|+..+. +...+.-.+... .+.++..|..+|+..+ .-++..|+++|.+|-. -|. . +. -++.+|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 6666654433 322233233221 4678888888998864 4599999999988731 121 1 21 2566777
Q ss_pred HHHccCCCHHHHHHHHHHHHHHHhhChhhH-H-HHHHhheecccCCCHHHHHHHHHHHhccCCC------CcHHHHHHHH
Q 002911 285 QLLLSQSDNNVKLIVLDRLNELRSSHRDIM-V-DLIMDVLRALNSPNLDIRRKTLDIVLELITP------RNINEVVLML 356 (867)
Q Consensus 285 ~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l-~-~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~------~Nv~~IV~~L 356 (867)
+.|+.=.--.|---+|++|.+|.+.||..+ + .-++.++..|+--...+.|.||.+..++|.+ .-|-+.|+.|
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL 340 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLL 340 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 777643334445567899999999999754 2 1233333333333567999999999988853 5677777766
Q ss_pred HHHHHHhh
Q 002911 357 KKEVVKTQ 364 (867)
Q Consensus 357 ~kel~~~~ 364 (867)
.. +..+.
T Consensus 341 ~~-lLs~~ 347 (1051)
T KOG0168|consen 341 TP-LLSYQ 347 (1051)
T ss_pred HH-HHhhc
Confidence 64 34443
No 155
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.61 E-value=24 Score=42.99 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=74.5
Q ss_pred hhhcCccchHHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 002911 211 VDRVSEWGELLQMVVLELIRKVCRTNKG--EKGKYIKIIISLLNAPS-TAVIYECAGTLVSLSSAPTAIRAAANTYSQLL 287 (867)
Q Consensus 211 l~~i~~~~p~lQ~~iL~ll~~~~~~~p~--~~~~li~~L~~lL~s~s-~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll 287 (867)
++.+.++||--+..+++-|.+.-+.-|. ...+++..+...|.+.- -.++.-++..|....+..+....+...+...+
T Consensus 279 LD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 279 LDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIY 358 (700)
T ss_pred cccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHh
Confidence 3455567777777777777777666554 24566666665554321 12222233333332221112222333333333
Q ss_pred ccCCCHHHHHHHHHHHHHHHhh-ChhhH-HHHHHhheecccCCCHHHHHHHHHHHhcc
Q 002911 288 LSQSDNNVKLIVLDRLNELRSS-HRDIM-VDLIMDVLRALNSPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 288 ~~~sD~Nvk~ivL~~L~~L~~~-~p~~l-~~~~~~il~~L~d~d~~IR~kaLelL~~L 343 (867)
.....-.+..+.++.+..|.++ +++-+ +....-+.+++++.+..|..++|.++-..
T Consensus 359 ~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv 416 (700)
T KOG2137|consen 359 SASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTV 416 (700)
T ss_pred ccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence 2222234677788888877765 44444 44455566789999999999999887743
No 156
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=85.55 E-value=21 Score=42.96 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=97.5
Q ss_pred cCCCCcchHHHHHHHHHHHhhcC---CCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC-------chhhHHHH
Q 002911 63 LPSEDHTIQKLLLLYLEIIDKTD---AKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPL 132 (867)
Q Consensus 63 ~~S~d~~lKkL~Ylyl~~~~~~d---~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~-------~~el~e~L 132 (867)
.+.+|+...+.+.+.+..++..= ..| +.. .=+...+.+=|.+|.-+|.|.+|-++|++. +.-+.-..
T Consensus 386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSFSRSVSALRTG-LKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcC-Ccc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 45688888887777665543210 112 111 112233444457899999999999999874 44455557
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc-----chH-HHHHHHHccCCChhHHHHHHHHHHhc--chhhHH
Q 002911 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAP-EMIEKVLSTEQDPSAKRNAFLMLFTC--DQDRAI 204 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~-----d~~-~ll~~lL~~D~D~~v~~~A~~~L~ei--~~~~al 204 (867)
+..+.+.+.+..+.+|+++..++++.-- .+.+... +++ ..|..+ .+|+|+.|...+|.+|..+ +....+
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f--~~de~~k~~~~~ki~a~~i~~l-~nd~d~~Vqeq~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMF--NCDEEEKFQLLAKIPANLILDL-INDPDWAVQEQCFQLLRNLTCNSRKSV 539 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHh--cchHHHHHHHHHHhhHHHHHHH-HhCCCHHHHHHHHHHHHHhhcCcHHHH
Confidence 7888899999999999999999998755 3443221 222 344443 4899999999999999875 445678
Q ss_pred HHHHHHhh
Q 002911 205 NYLLTHVD 212 (867)
Q Consensus 205 ~~L~~~l~ 212 (867)
+|+..-+.
T Consensus 540 dfll~~~~ 547 (678)
T KOG1293|consen 540 DFLLEKFK 547 (678)
T ss_pred HHHHHhhh
Confidence 88876554
No 157
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=83 Score=37.00 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=70.6
Q ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHhhcCCch------hhHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhhccCCCc
Q 002911 96 LICQNLRNNL---QHPNEYIRGVTLRFLCRLNET------EIIEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGE 165 (867)
Q Consensus 96 Lv~NsL~KDL---~~pNe~IRglALr~Ls~I~~~------el~e~L~~~V~~~L~d-~~pyVRK~A~lal~kI~~l~~~p 165 (867)
+..|.+..+. .+|+.-+||+|+|.|++.-+- .....++..|+..|-| .+.-|--.|+.|+.++-.+-.+.
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 4556655544 689999999999999998653 3344466667776655 57889999999988876631222
Q ss_pred ccccc---hHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002911 166 QLLVD---APEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 166 ~li~d---~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
++-+- +..-+..|. .+.|+.++.+||.++..+.+
T Consensus 335 ~l~~~~l~ialrlR~l~-~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLF-DSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred chhhhchhHHHHHHHHH-HhcChhhhhhHHHHHHHHHH
Confidence 22221 223355554 78888999999988876543
No 158
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.84 E-value=5.5 Score=46.83 Aligned_cols=180 Identities=12% Similarity=0.190 Sum_probs=114.7
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHH
Q 002911 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILI 97 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv 97 (867)
-+.++++.-....-++-+.++--=+.+...|. ..++-++|+-++.+.+..+|--|-+.+-.- +--.|.+ =+
T Consensus 482 ai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe~add~I~ell~d~ds~lRy~G~fs~alA--y~GTgn~-----~v 552 (926)
T COG5116 482 AIEDMRTYAGETQHERIKRGLGIGFALILYGR--QEMADDYINELLYDKDSILRYNGVFSLALA--YVGTGNL-----GV 552 (926)
T ss_pred HHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HHHHHHHHHHHhcCchHHhhhccHHHHHHH--HhcCCcc-----hh
Confidence 44566665555555555566665566777775 456667888788899998887776554431 2233432 12
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhccCCCcccccchHHHH
Q 002911 98 CQNLRN-NLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (867)
Q Consensus 98 ~NsL~K-DL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L-~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll 175 (867)
+..+.. ...|.|.-||-.|.-+||-+.-.+ ..+++...+.| ++.|++||--.+.|++-...- .+. ..+.+++
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tvelLs~shN~hVR~g~AvaLGiacag-~G~---~~a~diL 626 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVELLSESHNFHVRAGVAVALGIACAG-TGD---KVATDIL 626 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC-Ccc---HHHHHHH
Confidence 333333 356789999999999998875443 23345555665 456899999999998865551 222 2356888
Q ss_pred HHHHccCCChhHHHHHHHHHH----hcchhhH--HHHHHHHhhh
Q 002911 176 EKVLSTEQDPSAKRNAFLMLF----TCDQDRA--INYLLTHVDR 213 (867)
Q Consensus 176 ~~lL~~D~D~~v~~~A~~~L~----ei~~~~a--l~~L~~~l~~ 213 (867)
+.+ ..|.+..|+.+|..++. +++++.. +.-+.+.+++
T Consensus 627 ~~L-~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~ 669 (926)
T COG5116 627 EAL-MYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNR 669 (926)
T ss_pred HHH-hhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHH
Confidence 875 48999999999987655 4455431 3334444444
No 159
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.76 E-value=1.7 Score=41.40 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=38.3
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh---hHHH--HHHhheecccCCCHHHHHHHHHHHhcc
Q 002911 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD---IMVD--LIMDVLRALNSPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 279 aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~---~l~~--~~~~il~~L~d~d~~IR~kaLelL~~L 343 (867)
+...|+++|-++.|+.+-.+++.-|.++.+.+|. +++. ....++++++++|+.||..||..+..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3344555554455666666666667776666664 3322 233456677888888888888777654
No 160
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=84.06 E-value=33 Score=43.12 Aligned_cols=190 Identities=13% Similarity=0.199 Sum_probs=130.0
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-ccccchHHH---HHHHHccCCChhHHHHHHHHHHhcch
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAPEM---IEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~d~~~l---l~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
..+++.-+-+.+...+.|+..-=|+.|+..+..+.. .-. +..+...++ +.+....|.|..|..+|...|..++.
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~--e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILE--EAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHh--ccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 345666678888999999999999999999999988 333 233332232 22334588999999999999888864
Q ss_pred hh---HHHHHH----HHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc----
Q 002911 201 DR---AINYLL----THVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSL---- 269 (867)
Q Consensus 201 ~~---al~~L~----~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~L---- 269 (867)
.. ..+|-. .+++.+.+--+.+.-.+++.+..++... -..++.+.+...+.+.+|.+.-+|...+...
T Consensus 325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 32 233322 3333334444555667777777776533 3457889999999999999999988877543
Q ss_pred C---CChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHH
Q 002911 270 S---SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR-DIMVDLIM 319 (867)
Q Consensus 270 s---~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p-~~l~~~~~ 319 (867)
. .....++.++..++... ++.|..||-.+++.+..+...+. .++..+..
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2 11234666666666543 68899999999999999887544 34444433
No 161
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=84.03 E-value=4.4 Score=37.85 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=32.5
Q ss_pred EEeecCCccccCCCCeEEEEEEEEEEe----cccceEEEEEEEecCCc
Q 002911 769 KLVERPQNYTLAPESSKQIKANIKVSS----TETGVIFGNIVYETSNV 812 (867)
Q Consensus 769 k~v~~p~~~~l~p~~~~~~~~~ikv~s----te~g~ifg~i~y~~~~~ 812 (867)
.+...|..+|++|++...+..+|.+.+ .-..++.|+|.+.+.++
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~ 103 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDG 103 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTT
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCC
Confidence 677788999999999999999999966 44699999999998654
No 162
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.62 E-value=78 Score=35.17 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=72.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcCCch------hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc----
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRLNET------EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL---- 168 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I~~~------el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li---- 168 (867)
+.+-+=|.++||-+|..|.+.+..+... .--+.+++.+.+.+.+..| -+-|+.|+.++.+ .+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq---~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ---KEELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh---hHHHHHHHH
Confidence 4455667789999999999888777654 1114568889999999888 6778889999887 23222
Q ss_pred cchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH-HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcC
Q 002911 169 VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA-INYLLTHVDRVSEWGELLQMVVLELIRKVCRTN 236 (867)
Q Consensus 169 ~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a-l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~ 236 (867)
.+++..+-..+.+++.+ .....+.+|..+.+++. ..-|...++ ..-+ ..+++++++.|...
T Consensus 81 ~~~~k~l~~~~~~p~~~-lad~~cmlL~NLs~~~~~~~~ll~~~~---~~~~---~~lm~l~~~~~d~~ 142 (353)
T KOG2973|consen 81 QDLLKVLMDMLTDPQSP-LADLICMLLSNLSRDDDEVAALLTNLT---EKKD---SGLMRLARAFCDKS 142 (353)
T ss_pred HHHHHHHHHHhcCcccc-hHHHHHHHHHHhccCchHHHHHHHhcc---cccc---cchHHHHHHHhCcc
Confidence 22233333333223222 22334445556665543 222322222 1111 45677777777643
No 163
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.80 E-value=90 Score=35.77 Aligned_cols=166 Identities=20% Similarity=0.319 Sum_probs=82.4
Q ss_pred HHHhhccCCCcccccc-----hHHHHHHHHccCCChhHHHHHHHHHHhcchhh-HHHHHHHHhhhcCccchHHHHHHHHH
Q 002911 155 VMAIYKLPQGEQLLVD-----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-AINYLLTHVDRVSEWGELLQMVVLEL 228 (867)
Q Consensus 155 l~kI~~l~~~p~li~d-----~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~-al~~L~~~l~~i~~~~p~lQ~~iL~l 228 (867)
+.++++ ..|.+..+ +.+-+..+++.|. ..|+.+|+.++-.+-.+. .++.+.+ .. -+| -+++.
T Consensus 7 Lv~l~~--~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~----l~--id~---~ii~S 74 (371)
T PF14664_consen 7 LVDLLK--RHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLK----LH--IDI---FIIRS 74 (371)
T ss_pred HHHHHH--hCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHH----cC--Cch---hhHhh
Confidence 445555 55544333 2344555555666 888999998886654332 2222211 11 122 22222
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 229 IRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 229 l~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
+.+... +..|+.+-++.+..++.-... ++ .+ | +..+.+++... .+.|.+.|.++++.|.++.-
T Consensus 75 L~~~~~-~~~ER~QALkliR~~l~~~~~------~~---~~---~---~~vvralvaia-e~~~D~lr~~cletL~El~l 137 (371)
T PF14664_consen 75 LDRDNK-NDVEREQALKLIRAFLEIKKG------PK---EI---P---RGVVRALVAIA-EHEDDRLRRICLETLCELAL 137 (371)
T ss_pred hcccCC-ChHHHHHHHHHHHHHHHhcCC------cc---cC---C---HHHHHHHHHHH-hCCchHHHHHHHHHHHHHHh
Confidence 222211 223444444444444332110 00 00 1 22334444443 34666788888888888887
Q ss_pred hChhhHHH--HHHhheecccCCCHHHHHHHHHHHhccCCCCcH
Q 002911 309 SHRDIMVD--LIMDVLRALNSPNLDIRRKTLDIVLELITPRNI 349 (867)
Q Consensus 309 ~~p~~l~~--~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv 349 (867)
.+|+++.. =...+++.+-|+...+....+..++.+.+.-+-
T Consensus 138 ~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 138 LNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred hCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 78876632 123344555555555666666666666665443
No 164
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=82.42 E-value=1e+02 Score=37.82 Aligned_cols=280 Identities=14% Similarity=0.128 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH---
Q 002911 127 EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--- 203 (867)
Q Consensus 127 el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~a--- 203 (867)
++-+.+..++.+ +.+.+++||. ++.-+..+.- +++..++ +...+..+ .+.|+.=+..=+..|..+-|+-.
T Consensus 236 ~~p~el~~~l~k-~l~~~~~~rp-~~~~l~~~~f--f~D~~~~-aLrfLD~l--~~kdn~qKs~Flk~Ls~~ip~fp~rv 308 (700)
T KOG2137|consen 236 NLPSELRESLKK-LLNGDSAVRP-TLDLLLSIPF--FSDPGLK-ALRFLDDL--PQKDNSQKSSFLKGLSKLIPTFPARV 308 (700)
T ss_pred cCcHHHHHHHHH-HhcCCcccCc-chhhhhcccc--cCCchhh-hhhhcccc--cccCcHHHHHHHHHHHHhhccCCHHH
Confidence 333444445554 4578999999 7777776655 4443332 22334442 34677777666666666654421
Q ss_pred -----HHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHcCCC----hHHHHHHHHHHHhcCCC
Q 002911 204 -----INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG--EKGKYIKIIISLLNAPS----TAVIYECAGTLVSLSSA 272 (867)
Q Consensus 204 -----l~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~--~~~~li~~L~~lL~s~s----~aV~~eaa~tL~~Ls~~ 272 (867)
+++|...+. ++-++-.++.++..++...+. ...+++..|.++++.+. ....+|=..+|..-.+.
T Consensus 309 ~~~kiLP~L~~el~-----n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~ 383 (700)
T KOG2137|consen 309 LFQKILPTLVAELV-----NTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP 383 (700)
T ss_pred HHHhhhhHHHHHhc-----cccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh
Confidence 233333331 122233344444444333222 23566677777776432 34777878888877665
Q ss_pred hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHhheecccCCCHHHHHHHHHHHhccCCCC
Q 002911 273 PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD-----IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR 347 (867)
Q Consensus 273 p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~-----~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~ 347 (867)
+ .++.-+.+++-.-+++.|.+++=.+|..+-...+.-+. .+=+-++.+ ++...+.++|.-+|.-+..++..-
T Consensus 384 e-~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 E-EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred H-HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHH
Confidence 4 44444445565566888889988888888766653221 112233333 677889999988877766665322
Q ss_pred cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCc----cHHHHHHHHHHHHcCCCc--ccHHHHHHHHHH
Q 002911 348 NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE----VASTVVHLLMDFLGDSNV--ASAIDVIIFVRE 421 (867)
Q Consensus 348 Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~----~a~~~v~~Ll~lL~~~~~--~v~~evi~~l~~ 421 (867)
-.-.+++++.-.++.+. -.++...-..++....++.+-+. .+..|+..++-+.....= ..-.+.+.++++
T Consensus 461 D~~~v~d~~lpi~~~~~----~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ 536 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIK----TRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRL 536 (700)
T ss_pred HHHHhHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHH
Confidence 22233333333322221 14678888888888887765443 467788877776655431 122345667777
Q ss_pred HHHh
Q 002911 422 IIEM 425 (867)
Q Consensus 422 ii~~ 425 (867)
+++.
T Consensus 537 ml~~ 540 (700)
T KOG2137|consen 537 MLSA 540 (700)
T ss_pred HHhh
Confidence 7654
No 165
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.80 E-value=63 Score=37.01 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=29.7
Q ss_pred HHHHHhhChhhH------HHHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002911 303 LNELRSSHRDIM------VDLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 303 L~~L~~~~p~~l------~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
+..+.+..|+++ ..-+..++.+|.-|...+|+-.+++++++..
T Consensus 221 i~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 221 ISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 334444555544 0234557778888999999999999997654
No 166
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.89 E-value=2.8 Score=46.05 Aligned_cols=139 Identities=20% Similarity=0.248 Sum_probs=92.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCC-CCCCc----hhHHHHHhhcCCCCcchHHHHHHHHHHH-hhcCCCCCCC
Q 002911 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNG-ETLPQ----LFITIVRYVLPSEDHTIQKLLLLYLEII-DKTDAKGRVL 91 (867)
Q Consensus 18 ~~~eIr~~L~s~~~~~K~~alkklI~l~~~G-~d~s~----l~~~VIk~v~~S~d~~lKkL~Ylyl~~~-~~~d~dg~l~ 91 (867)
.+.+.-+.|.+.+=..|++++.-|-.+..-- +-+.. ..+.|++.+ .+..-.+=|...+.+.-+ .-++ .++.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln--~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLN--NSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4566777888888888988876554332211 22333 333344432 333344556665554443 2222 2222
Q ss_pred chH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 92 PEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 92 ~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
+++ .+++-.+.|--+ .|-|||.-|.++|-.+..+---..+.+.++.++.|.+|.||++|++|..+...
T Consensus 166 ~~ld~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 344 566666666544 46999999999999999888888899999999999999999999999876554
No 167
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.78 E-value=45 Score=42.01 Aligned_cols=176 Identities=13% Similarity=0.177 Sum_probs=125.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCC-CC----CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchH
Q 002911 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGE-TL----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM 94 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~G~-d~----s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Em 94 (867)
..+.+.+.+++=.++.+++..++-.+..-. .. ..++.-.++-+.-..|...-.+.-.+++.+++.-..+ .++-.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHH
Confidence 357788889999999999999998776543 22 2233333332334556666666667777776554433 12334
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc-ccccc---
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVD--- 170 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p-~li~d--- 170 (867)
..+.|.|..-+.+....+|-.++.++=.+..---+..+.+.|...+.|.+|-+|---...+.+.++ ..+ ...+.
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~--~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR--KLGPKTVEKETV 412 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--hcCCcCcchhhH
Confidence 678899999999999999999998888888777788899999999999999999998888888887 333 33222
Q ss_pred --hHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002911 171 --APEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (867)
Q Consensus 171 --~~~ll~~lL~~D~D~~v~~~A~~~L~ei~ 199 (867)
..+.+... .+|.|.-|+-+|+.++..+-
T Consensus 413 ~~l~p~~~~~-~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 413 KTLVPHLIKH-INDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HHHhHHHhhh-ccCCcHHHHHHHHHHHHHHH
Confidence 22223232 38999999999988777653
No 168
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.35 E-value=1.9 Score=30.63 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCC
Q 002911 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN 124 (867)
Q Consensus 98 ~NsL~KDL~~pNe~IRglALr~Ls~I~ 124 (867)
.+.+.+-++||++.||-.|.++|+.|.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467888999999999999999998763
No 169
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.70 E-value=17 Score=35.25 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH-----H-HHHHhheecccC
Q 002911 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM-----V-DLIMDVLRALNS 327 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l-----~-~~~~~il~~L~d 327 (867)
.+-....+.+..+-.-... -+.++..+.+.| +++++++++.+|..|..+..+-...| . ++..++.+++..
T Consensus 16 ~D~~~il~icd~I~~~~~~---~k~a~raL~krl-~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 16 PDWALNLELCDLINLKPNG---PKEAARAIRKKI-KYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred ccHHHHHHHHHHHhCCCCC---HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence 4445566666555433222 345666666665 56788999999988888876533322 2 334445555553
Q ss_pred ---CCHHHHHHHHHHHhcc
Q 002911 328 ---PNLDIRRKTLDIVLEL 343 (867)
Q Consensus 328 ---~d~~IR~kaLelL~~L 343 (867)
.+..||.++++++...
T Consensus 92 ~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 92 SPKYDPKVREKALELILAW 110 (133)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 5788999999988753
No 170
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=79.57 E-value=1.2e+02 Score=34.66 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCC----CCCchHHHHHHHHHHhcCC-------CCHHHHHHHHHHhhcCC-chhhHHH
Q 002911 64 PSEDHTIQKLLLLYLEIIDKTDAKG----RVLPEMILICQNLRNNLQH-------PNEYIRGVTLRFLCRLN-ETEIIEP 131 (867)
Q Consensus 64 ~S~d~~lKkL~Ylyl~~~~~~d~dg----~l~~EmiLv~NsL~KDL~~-------pNe~IRglALr~Ls~I~-~~el~e~ 131 (867)
++.+..-|.=+|+-+...-+...+- .+.+.|-+.+..+++|+.+ .+.-+...|||+|+.+- .|+++..
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 3444455555555544432222111 1111245788999999987 47788899999999864 4555443
Q ss_pred --------HHHHHHHhcCC-CChHHHHHHHHHHHHhhccCCCcccc
Q 002911 132 --------LIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 132 --------L~~~V~~~L~d-~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
++......+.+ ..|-.--++.+.+.+.-+ +++..+
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~--f~~~~~ 126 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK--FSPKIM 126 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CCCccc
Confidence 33333444444 344344445555555555 555443
No 171
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=79.52 E-value=1.1e+02 Score=36.52 Aligned_cols=164 Identities=13% Similarity=0.125 Sum_probs=100.3
Q ss_pred cCCChhHHHHHHHHHHhcchh----hHHHHHHHHhh--------hcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 002911 181 TEQDPSAKRNAFLMLFTCDQD----RAINYLLTHVD--------RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIII 248 (867)
Q Consensus 181 ~D~D~~v~~~A~~~L~ei~~~----~al~~L~~~l~--------~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~ 248 (867)
.|++..|...|-..|-.+..+ .-+++|..++. ..+-.++-+|.+||.+|.|-.. -.......++++.
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-Aa~~~~~~~~i~~ 325 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-AATSFPNILQIVF 325 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-HHhCCccHHHHHh
Confidence 455555555555555544322 12444444443 1345677889999999988422 1223346778888
Q ss_pred HHHcCC--ChHHHHHHHHHH---HhcC--CChHHHHHHHHHHHH----HH-------ccCCCHHHHHHHHHHHHHHHhhC
Q 002911 249 SLLNAP--STAVIYECAGTL---VSLS--SAPTAIRAAANTYSQ----LL-------LSQSDNNVKLIVLDRLNELRSSH 310 (867)
Q Consensus 249 ~lL~s~--s~aV~~eaa~tL---~~Ls--~~p~~lk~aa~~li~----ll-------~~~sD~Nvk~ivL~~L~~L~~~~ 310 (867)
.-|.+. ++-+.-.+...+ .... ..+..++.+...+.. ++ ....+.+.|-.+.+.|..|.++.
T Consensus 326 ~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~ 405 (501)
T PF13001_consen 326 DGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA 405 (501)
T ss_pred ccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC
Confidence 888887 333443343333 2211 123344444433322 22 11346788999999999999999
Q ss_pred hhhHH---HHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002911 311 RDIMV---DLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 311 p~~l~---~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
|..+. .++..++..|.+++.++|.-.-+.|..|+.
T Consensus 406 p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 406 PSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred cccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99884 367778888899999999988877776553
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.39 E-value=1e+02 Score=38.61 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=85.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhccCCCccccc---chHHHHHHHHccCCChhHHHHHHH---HHHhcchhhHHHHHH
Q 002911 135 SVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV---DAPEMIEKVLSTEQDPSAKRNAFL---MLFTCDQDRAINYLL 208 (867)
Q Consensus 135 ~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~---d~~~ll~~lL~~D~D~~v~~~A~~---~L~ei~~~~al~~L~ 208 (867)
..+.-+.|+-+.+|-.|+.-+.++++. ..+.... ....+....| .|.|+.|--||+. .||++-|+.-++-|.
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 344455667777777777777777661 1111111 1223333434 6777777666665 777776665555444
Q ss_pred HHhhhc---CccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 002911 209 THVDRV---SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQ 285 (867)
Q Consensus 209 ~~l~~i---~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ 285 (867)
..+... +..+..+ ++=+.|.++. +..+..|. ......+.+++.
T Consensus 809 e~Y~s~k~k~~~d~~l--kVGEai~k~~------------------qa~Gel~~--------------~y~~~Li~tfl~ 854 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRL--KVGEAILKVA------------------QALGELVF--------------KYKAVLINTFLS 854 (982)
T ss_pred HHHHhcccCCCcccee--hHHHHHHHHH------------------HHhccHHH--------------HHHHHHHHHHHH
Confidence 433221 1112111 1112222222 11111100 001112223333
Q ss_pred HHccCCCHHHHHHHHHHHHHHHhhCh----hhHHHHHHhheecc-cCCCHHHHHHHHHHHhccCCCCc
Q 002911 286 LLLSQSDNNVKLIVLDRLNELRSSHR----DIMVDLIMDVLRAL-NSPNLDIRRKTLDIVLELITPRN 348 (867)
Q Consensus 286 ll~~~sD~Nvk~ivL~~L~~L~~~~p----~~l~~~~~~il~~L-~d~d~~IR~kaLelL~~Lv~~~N 348 (867)
-. .++|...|.-.+..+.++.+... +.|-+...-|+... .|+..-+||.|..++..+.+...
T Consensus 855 gv-repd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 855 GV-REPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred hc-CCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 22 25555566666666666655332 23333333344333 36678899999999988776544
No 173
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=79.24 E-value=42 Score=46.82 Aligned_cols=267 Identities=18% Similarity=0.162 Sum_probs=141.9
Q ss_pred HHHHHHHhhcCCch--hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc--------c--ccchHHHHHHHHc
Q 002911 113 RGVTLRFLCRLNET--EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--------L--LVDAPEMIEKVLS 180 (867)
Q Consensus 113 RglALr~Ls~I~~~--el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~--------l--i~d~~~ll~~lL~ 180 (867)
--.|.++++.+... .+...+-..+...+++.++-+||+|++++..+++ ..+. + +......+..+=.
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~--~~~~~~~~~~~~~~~v~~vl~~ll~~ai 538 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLK--YDIICSQTSPHALQVVKEVLSALLTVAI 538 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh--hhhhhhcccchHHHHHHHHHHHHHHHhc
Confidence 44699999998754 3333344446667889999999999999999988 4443 1 1111122222224
Q ss_pred cCCChhHHHHHHHHHHhc-chhhHHHHHHHHhh-hcCccchHHHHHHHHHHHHhhhcCchh-----HHHHHHHHHHHHcC
Q 002911 181 TEQDPSAKRNAFLMLFTC-DQDRAINYLLTHVD-RVSEWGELLQMVVLELIRKVCRTNKGE-----KGKYIKIIISLLNA 253 (867)
Q Consensus 181 ~D~D~~v~~~A~~~L~ei-~~~~al~~L~~~l~-~i~~~~p~lQ~~iL~ll~~~~~~~p~~-----~~~li~~L~~lL~s 253 (867)
.|+||..+...+..+.+- ++..|.+.+..++- .+....=..|......+++++-.||+. +...+..+.++..+
T Consensus 539 a~~~~~i~~~v~~~l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s 618 (2341)
T KOG0891|consen 539 ADTDPDIRIRVLSSLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS 618 (2341)
T ss_pred cCCCcchhhhHHhhhccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc
Confidence 788998877666666521 12222222222111 111111124667777777777777653 33344444444443
Q ss_pred CChHHHHHHHHHHHhcC-CChHHHHHH----HHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH----HHHHHhheec
Q 002911 254 PSTAVIYECAGTLVSLS-SAPTAIRAA----ANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM----VDLIMDVLRA 324 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls-~~p~~lk~a----a~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l----~~~~~~il~~ 324 (867)
...-+.-+|+.-+..+- ..+..++.- ...++..+ .+.++-+--.++..+.+|.......+ .++...|...
T Consensus 619 g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~-~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~ 697 (2341)
T KOG0891|consen 619 GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKL-QDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKM 697 (2341)
T ss_pred chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHH-hccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHH
Confidence 33334444444433321 111111111 11222222 35556677778888888876443222 3344445555
Q ss_pred ccCCC-HHHHHHHHHHHhccCCCCcH--------HHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc
Q 002911 325 LNSPN-LDIRRKTLDIVLELITPRNI--------NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (867)
Q Consensus 325 L~d~d-~~IR~kaLelL~~Lv~~~Nv--------~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k 388 (867)
+.+.+ ...|+-++..+.+++..+-+ ..+++.|...+.. +.....|+.+++.+|.++..
T Consensus 698 l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~t------e~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 698 LQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKT------EQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred HHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhH------hhhhHHHHHHHHHhhhhccc
Confidence 55444 34455577777777766543 2334434332221 22456889999999887754
No 174
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=78.45 E-value=1.7e+02 Score=35.68 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=72.5
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh----hHH-HHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHH
Q 002911 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD----IMV-DLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVV 353 (867)
Q Consensus 279 aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~----~l~-~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV 353 (867)
.+.++++++ ..++.-|+-++|..|..+...+.. ++. ..+..+...+.++|..+|..++.+|..+.=-
T Consensus 420 v~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~------- 491 (678)
T KOG1293|consen 420 VAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN------- 491 (678)
T ss_pred hHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc-------
Confidence 566777776 466667777888888777654322 221 2344455667788888887777777754310
Q ss_pred HHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHH
Q 002911 354 LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSI 433 (867)
Q Consensus 354 ~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~i 433 (867)
.+.+++....+.|+ -..+.++..|....+.+.+...+|++.-.. ...
T Consensus 492 ----------------~de~~k~~~~~ki~-------------a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~----~~s 538 (678)
T KOG1293|consen 492 ----------------CDEEEKFQLLAKIP-------------ANLILDLINDPDWAVQEQCFQLLRNLTCNS----RKS 538 (678)
T ss_pred ----------------chHHHHHHHHHHhh-------------HHHHHHHHhCCCHHHHHHHHHHHHHhhcCc----HHH
Confidence 12223333333332 334666677777777777777777776432 235
Q ss_pred HHHHHHHhcc
Q 002911 434 ITRLLDNFYQ 443 (867)
Q Consensus 434 l~~L~~~L~~ 443 (867)
+.-+++.+++
T Consensus 539 vdfll~~~~~ 548 (678)
T KOG1293|consen 539 VDFLLEKFKD 548 (678)
T ss_pred HHHHHHhhhH
Confidence 5555555444
No 175
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=77.32 E-value=3e+02 Score=38.04 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=59.9
Q ss_pred ecccCCCHHHHHHHHHHHhccC-------CCCcHHHHHHH----HHHHHHHhhcC----------------CccCCHHHH
Q 002911 323 RALNSPNLDIRRKTLDIVLELI-------TPRNINEVVLM----LKKEVVKTQSG----------------ELEKNGEYR 375 (867)
Q Consensus 323 ~~L~d~d~~IR~kaLelL~~Lv-------~~~Nv~~IV~~----L~kel~~~~~~----------------~~d~d~e~r 375 (867)
.+..|++++||..||+.|+.+. ++..|+.+... +..+++..... +.+.+..+.
T Consensus 1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~ 1433 (1780)
T PLN03076 1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLY 1433 (1780)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHH
Confidence 3445889999999999998655 34566655553 22333321000 001122344
Q ss_pred HHHHHHHHHhHccCC-------ccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHh
Q 002911 376 QMLIQAIHSCAIKFP-------EVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM 425 (867)
Q Consensus 376 ~~lI~aI~~la~kf~-------~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~ 425 (867)
...+.++..++.-|. ...+.+++.|..++...++.++.-.+..+..++..
T Consensus 1434 eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1434 ETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 555555555544332 23456666777777778877777777777777654
No 176
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=76.71 E-value=2.8 Score=40.12 Aligned_cols=39 Identities=36% Similarity=0.631 Sum_probs=35.4
Q ss_pred EeecCCccccCCCCeEEEEEEEEEEec-ccceEEEEEEEe
Q 002911 770 LVERPQNYTLAPESSKQIKANIKVSST-ETGVIFGNIVYE 808 (867)
Q Consensus 770 ~v~~p~~~~l~p~~~~~~~~~ikv~st-e~g~ifg~i~y~ 808 (867)
++..|..+||+||+.+.+.++||+-.. -.|+|.|-|.|.
T Consensus 80 ~v~~~~~Vtl~~~~sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 80 LVKIPKEVTLPPNESKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred hccCCcEEEECCCCEEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 678888899999999999999999776 799999999876
No 177
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=76.61 E-value=1.6e+02 Score=34.47 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHH
Q 002911 110 EYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKR 189 (867)
Q Consensus 110 e~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~ 189 (867)
+...-.-+..|+.+..+++++.+..-|-..|.+....++- ...... ..|+. +...+. +| ...|..+.-
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-----f~~~~~--~~~~~---~~~fl~-lL-~~~d~~i~~ 119 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-----FHDDAL--LKKKT---WEPFFN-LL-NRQDQFIVH 119 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-----HHHHhh--ccccc---hHHHHH-HH-cCCchhHHH
Confidence 4444455667777888888888777777777664332221 111111 11211 123332 44 344566655
Q ss_pred HHHHHHHhcc---h----hhHHHHHHHHhh-hcCc-cchHHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHHHcCCC
Q 002911 190 NAFLMLFTCD---Q----DRAINYLLTHVD-RVSE-WGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISLLNAPS 255 (867)
Q Consensus 190 ~A~~~L~ei~---~----~~al~~L~~~l~-~i~~-~~p~lQ~~iL~ll~~~~~~~p~~~-----~~li~~L~~lL~s~s 255 (867)
.|+..|.-+- + ....+++.+.+. ++.. .+.-.|...++.+..+.+.+ ..| ...++.|.++|+...
T Consensus 120 ~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~ 198 (429)
T cd00256 120 MSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNAT 198 (429)
T ss_pred HHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhcc
Confidence 5665555432 1 112333332222 1111 12333544556666554432 222 225677888887643
Q ss_pred --hHHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 256 --TAVIYECAGTLVSLSSAPTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 256 --~aV~~eaa~tL~~Ls~~p~~lk~-----aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
.-..|++.-++.-++-++..... +...+++++-...---|--+++..+..+..
T Consensus 199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 199 LGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 35899999999888755443221 334445554333333333344555555544
No 178
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.53 E-value=67 Score=31.59 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh-----hHH-HHHHhheeccc-
Q 002911 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD-----IMV-DLIMDVLRALN- 326 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~-----~l~-~~~~~il~~L~- 326 (867)
.+-+...+.+..+-.-.. .-+.++..+.+.+ .++++|+.+.+|..|..+..+-.. +.+ ++...+.++++
T Consensus 20 ~dw~~ileicD~In~~~~---~~k~a~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~ 95 (142)
T cd03569 20 PDLASILEICDMIRSKDV---QPKYAMRALKKRL-LSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT 95 (142)
T ss_pred cCHHHHHHHHHHHhCCCC---CHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc
Confidence 334455555555433222 2345666666666 457888988888888887764211 111 12233333333
Q ss_pred CCCHHHHHHHHHHHhcc
Q 002911 327 SPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 327 d~d~~IR~kaLelL~~L 343 (867)
..+..||.+.|+++...
T Consensus 96 ~~~~~Vk~kil~li~~W 112 (142)
T cd03569 96 TKNEEVRQKILELIQAW 112 (142)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 56778888888887753
No 179
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=76.38 E-value=4.2 Score=30.67 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 002911 132 LIPSVLQNLQHRHPYIRRNAILAVMAIY 159 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~ 159 (867)
.+|.+.++|.|.++.||+.|+.|+..+-
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5788899999999999999999998764
No 180
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=76.15 E-value=61 Score=35.06 Aligned_cols=99 Identities=14% Similarity=0.252 Sum_probs=70.0
Q ss_pred cccccchHHHHHHHHc------cCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcC-----ccchHHHHHHHHHHHHhh
Q 002911 165 EQLLVDAPEMIEKVLS------TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVS-----EWGELLQMVVLELIRKVC 233 (867)
Q Consensus 165 p~li~d~~~ll~~lL~------~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~-----~~~p~lQ~~iL~ll~~~~ 233 (867)
..++|+...+++++.. .+.+......|+.+|.+....+|++.|.+++++=+ .+++|+---+-+++...+
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~ 109 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG 109 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh
Confidence 4456666566655431 33444456789999999999999999998886422 266777777788888887
Q ss_pred hcCchhHHHHHHHHHHHHcCCCh--HHHHHHHHHHHhcC
Q 002911 234 RTNKGEKGKYIKIIISLLNAPST--AVIYECAGTLVSLS 270 (867)
Q Consensus 234 ~~~p~~~~~li~~L~~lL~s~s~--aV~~eaa~tL~~Ls 270 (867)
..++ +.|.+++.+.+. -|+..|.+++..+.
T Consensus 110 ~G~~-------~~L~~li~~~~~~~yvR~aa~~aL~~l~ 141 (249)
T PF06685_consen 110 DGDI-------EPLKELIEDPDADEYVRMAAISALAFLV 141 (249)
T ss_pred CCCH-------HHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7665 557777777654 48888888888774
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.64 E-value=21 Score=45.15 Aligned_cols=133 Identities=18% Similarity=0.259 Sum_probs=90.7
Q ss_pred chhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHh--------cCCC----CHHHHHHHHHHh
Q 002911 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNN--------LQHP----NEYIRGVTLRFL 120 (867)
Q Consensus 53 ~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KD--------L~~p----Ne~IRglALr~L 120 (867)
..|+.|+| +++|+-.++|-++-+-|..+--.|+.-. --|-|| ..+| ++.-|.+|.=.|
T Consensus 512 GIFPYVLK-LLQS~a~ELrpiLVFIWAKILAvD~SCQ---------~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVL 581 (1387)
T KOG1517|consen 512 GIFPYVLK-LLQSSARELRPILVFIWAKILAVDPSCQ---------ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVL 581 (1387)
T ss_pred chHHHHHH-HhccchHhhhhhHHHHHHHHHhcCchhH---------HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHH
Confidence 46899999 6699999999877665655433554321 123344 1122 467888888888
Q ss_pred hcCCc-------hhhHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhhccCCCcccc----cc-hHHHHHHHHccCCChhH
Q 002911 121 CRLNE-------TEIIEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLL----VD-APEMIEKVLSTEQDPSA 187 (867)
Q Consensus 121 s~I~~-------~el~e~L~~~V~~~L~d-~~pyVRK~A~lal~kI~~l~~~p~li----~d-~~~ll~~lL~~D~D~~v 187 (867)
+.|.. .-+-..++..-...|++ ++|..|.-.++|++++.+ .++.-. .+ +.+.+..+| .|+-|.|
T Consensus 582 Aviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~--d~~~Arw~G~r~~AhekL~~~L-sD~vpEV 658 (1387)
T KOG1517|consen 582 AVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE--DYDEARWSGRRDNAHEKLILLL-SDPVPEV 658 (1387)
T ss_pred HHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--hcchhhhccccccHHHHHHHHh-cCccHHH
Confidence 87642 12223355555566677 589999999999999999 666331 22 456666655 8999999
Q ss_pred HHHHHHHHHhc
Q 002911 188 KRNAFLMLFTC 198 (867)
Q Consensus 188 ~~~A~~~L~ei 198 (867)
+.+|+.+|...
T Consensus 659 RaAAVFALgtf 669 (1387)
T KOG1517|consen 659 RAAAVFALGTF 669 (1387)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 182
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=75.42 E-value=35 Score=41.28 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHH
Q 002911 109 NEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAK 188 (867)
Q Consensus 109 Ne~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~ 188 (867)
.+-+-|.||-+||.=...+| ....+-..|...+|.+||..=+|+.-++- .+|.+ .+.+.+.+|. .|.|+.|.
T Consensus 621 ~~avLgiAliAMgeeig~eM---~lR~f~h~l~yge~~iRravPLal~llsv--SNPq~--~vlDtLsk~s-hd~D~eva 692 (878)
T KOG2005|consen 621 ELAVLGIALIAMGEEIGSEM---VLRHFGHLLHYGEPHIRRAVPLALGLLSV--SNPQV--NVLDTLSKFS-HDGDLEVA 692 (878)
T ss_pred cchhhhhhhhhhhhhhhhHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhcc--CCCcc--hHHHHHHHhc-cCcchHHH
Confidence 36788999988876444443 35556667778999999999999998888 67754 3568888875 89999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHhhhc-----CccchHHHHHHHHHHHHhhhc
Q 002911 189 RNAFLMLFTCDQDRAINYLLTHVDRV-----SEWGELLQMVVLELIRKVCRT 235 (867)
Q Consensus 189 ~~A~~~L~ei~~~~al~~L~~~l~~i-----~~~~p~lQ~~iL~ll~~~~~~ 235 (867)
.||+.++.-|.....-..|...++++ .+.+..+-+.|.+-+..++..
T Consensus 693 ~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 693 MNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKG 744 (878)
T ss_pred HHHHHHhccccCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCC
Confidence 99999999887543223334444433 244555666777777666553
No 183
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=74.98 E-value=1.4e+02 Score=33.18 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=37.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhcC--------CchhhHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHh
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLCRL--------NETEIIEPLIPSVLQNLQHRH--PYIRRNAILAVMAI 158 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls~I--------~~~el~e~L~~~V~~~L~d~~--pyVRK~A~lal~kI 158 (867)
.++.|-++-...--+.+|+|.++-+ ...++.+.+.|.+++.+.|.+ +-+|-.++.|+.-+
T Consensus 89 ~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 89 DALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 4555555444444455555554433 357899999999999998864 45555555455543
No 184
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=74.93 E-value=4.2 Score=42.15 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccc
Q 002911 100 NLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (867)
Q Consensus 100 sL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li 168 (867)
.+.+=+.|+|+++|-.|+-.+......+-.+.+...+..++.|++.||||...-++..+++ .+|+.+
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~--~~~~~v 190 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGK--KDPDEV 190 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT--T-HHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH--hCHHHH
Confidence 4445567999999999998888877777788889999999999999999999999999999 777543
No 185
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.89 E-value=17 Score=40.16 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC--chh----hHHHHHHHHHHhcCCC
Q 002911 70 IQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETE----IIEPLIPSVLQNLQHR 143 (867)
Q Consensus 70 lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~--~~e----l~e~L~~~V~~~L~d~ 143 (867)
.-...|+.-+.+..+| +||+-| +...+-|.+.+=....-+|.++.++. .+| ++..++..|.+.+...
T Consensus 69 ~~~~e~~~sk~l~~fd-----~p~~al--~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl 141 (334)
T KOG2933|consen 69 IHSVEYIVSKNLSPFD-----DPEAAL--KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL 141 (334)
T ss_pred cccHHHhhhcccCccC-----cHHHHH--HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh
Confidence 3367788877776565 356544 77778888888777777776666443 122 2334677888889999
Q ss_pred ChHHHHHHHHHHHHhhc
Q 002911 144 HPYIRRNAILAVMAIYK 160 (867)
Q Consensus 144 ~pyVRK~A~lal~kI~~ 160 (867)
.+-|-|.|++|+.-||.
T Consensus 142 RS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 142 RSAVSRAACMTLADIFS 158 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999998
No 186
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=74.70 E-value=1.6e+02 Score=33.40 Aligned_cols=115 Identities=18% Similarity=0.331 Sum_probs=74.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHH----H----HhheecccCCCHHHHHHHHHHHhccC-CCCcHHHHHHHHHHH
Q 002911 289 SQSDNNVKLIVLDRLNELRSSHRDIMVDL----I----MDVLRALNSPNLDIRRKTLDIVLELI-TPRNINEVVLMLKKE 359 (867)
Q Consensus 289 ~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~----~----~~il~~L~d~d~~IR~kaLelL~~Lv-~~~Nv~~IV~~L~ke 359 (867)
..+.-.|--=++..+..+..+|+.+.+++ . ..+-.+|.+++--.||.+|.+|..+. +..|..-..
T Consensus 174 ~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~------ 247 (335)
T PF08569_consen 174 QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT------ 247 (335)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH------
T ss_pred cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH------
Confidence 44555666667777777777787665432 2 22335678889999999999999866 555554222
Q ss_pred HHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002911 360 VVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLD 439 (867)
Q Consensus 360 l~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~ 439 (867)
+|.+ ....+..+|.+|++....+..|+..+++=.+ -+|..-..|..-|..
T Consensus 248 --~yi~---------------------------~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV-ANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 248 --RYIS---------------------------SPENLKLMMNLLRDKSKNIQFEAFHVFKVFV-ANPNKPPPIVDILIK 297 (335)
T ss_dssp --HHTT----------------------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH-H-SS-BHHHHHHHHH
T ss_pred --HHHC---------------------------CHHHHHHHHHHhcCcchhhhHHHHHHHHHHH-hCCCCChHHHHHHHH
Confidence 2221 1256888999999999999999998888665 457766666655544
No 187
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.47 E-value=3e+02 Score=36.61 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=61.9
Q ss_pred HHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCc------HHHHHHHHHHHHHHhhcCCccCCHHH
Q 002911 301 DRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRN------INEVVLMLKKEVVKTQSGELEKNGEY 374 (867)
Q Consensus 301 ~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~N------v~~IV~~L~kel~~~~~~~~d~d~e~ 374 (867)
+.+.+|....|+++..-+..+..=|.+++..+|++|..++..|....- -..+... .+.+.. |.+.++
T Consensus 244 e~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~---fl~r~~----D~~~~v 316 (1266)
T KOG1525|consen 244 ELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSA---FLGRFN----DISVEV 316 (1266)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHH---HHHHhc----cCChhh
Confidence 445566666788887777777777888899999999999998765422 2222222 233333 578899
Q ss_pred HHHHHHHHHHhHccCCccHHH
Q 002911 375 RQMLIQAIHSCAIKFPEVAST 395 (867)
Q Consensus 375 r~~lI~aI~~la~kf~~~a~~ 395 (867)
|.+.++.+.+|-..-|..+..
T Consensus 317 R~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 317 RMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred hhhHHHHhHHHHhcCchhhhH
Confidence 999999999987776765543
No 188
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=74.20 E-value=1.3e+02 Score=35.00 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHcCC-----CcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhh
Q 002911 392 VASTVVHLLMDFLGDS-----NVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALW 455 (867)
Q Consensus 392 ~a~~~v~~Ll~lL~~~-----~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alW 455 (867)
....+++.+..-|... +..+..-+..+++-+.+.+|++......+..+.-..-...+..+..-|
T Consensus 333 ~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~~~~r~~~W 401 (409)
T PF01603_consen 333 NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAREKKRKKKW 401 (409)
T ss_dssp THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666665542 245666667788888888888776655554443332223345566666
No 189
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.53 E-value=31 Score=40.99 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=98.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 002911 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQ 99 (867)
Q Consensus 20 ~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~N 99 (867)
+.+|+.|...+. .--+|---=+-+.|+|---+.+.-+.-.+.-.++.-.+||-+=+-+..+- .| ++||. =.
T Consensus 449 e~lKe~l~nD~a-~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~----yg--rqe~a--dd 519 (926)
T COG5116 449 EKLKELLKNDRA-LLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALIL----YG--RQEMA--DD 519 (926)
T ss_pred HHHHHHHhcchh-hhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhh----hh--hHHHH--HH
Confidence 445555554332 22233222334667787667777777776544555567775544433321 13 35652 12
Q ss_pred HHHHhcCCCCHHHHH-----HHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHH
Q 002911 100 NLRNNLQHPNEYIRG-----VTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEM 174 (867)
Q Consensus 100 sL~KDL~~pNe~IRg-----lALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~l 174 (867)
-+.+=+.|.++..|- .||-+.|. +...++..+.+. ...|.+.-|||.|+.|++-+.- .++++++...++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GT-gn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~--~D~~~lv~tvel 593 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGT-GNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCC--DDRDLLVGTVEL 593 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcC-CcchhHhhhhee---ecccCchHHHHHHHHheeeeEe--cCcchhhHHHHH
Confidence 333444556667763 44444433 344444433331 2578999999999999998887 788776643333
Q ss_pred HHHHHccCCChhHHHHHHHHHHhcchhh----HHHHHHHHh
Q 002911 175 IEKVLSTEQDPSAKRNAFLMLFTCDQDR----AINYLLTHV 211 (867)
Q Consensus 175 l~~lL~~D~D~~v~~~A~~~L~ei~~~~----al~~L~~~l 211 (867)
|....|+.|+.....+|.-.+... |++.|-.+.
T Consensus 594 ----Ls~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~ 630 (926)
T COG5116 594 ----LSESHNFHVRAGVAVALGIACAGTGDKVATDILEALM 630 (926)
T ss_pred ----hhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHh
Confidence 446678888887777777655433 455554443
No 190
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.21 E-value=30 Score=34.13 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh-----hHH-HHHHhheecccC
Q 002911 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD-----IMV-DLIMDVLRALNS 327 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~-----~l~-~~~~~il~~L~d 327 (867)
.+-++..+.+..+-.=. ..-+.++..+.+.+ .++++|+.+.+|..|..+..+-.. +.+ ++...+.+++++
T Consensus 16 ~dw~~il~icD~I~~~~---~~~k~a~ral~KRl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 16 ENWGLILDVCDKVKSDE---NGAKDCLKAIMKRL-NHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred cCHHHHHHHHHHHhcCC---ccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 33445555555544322 22345666666665 467788888888888877764222 222 234445555555
Q ss_pred -CCHHHHHHHHHHHhcc
Q 002911 328 -PNLDIRRKTLDIVLEL 343 (867)
Q Consensus 328 -~d~~IR~kaLelL~~L 343 (867)
.+..||.+.|+++...
T Consensus 92 ~~~~~Vk~kil~li~~W 108 (144)
T cd03568 92 RVHPTVKEKLREVVKQW 108 (144)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 6888999999888753
No 191
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=73.02 E-value=38 Score=34.08 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHH
Q 002911 274 TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH-RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEV 352 (867)
Q Consensus 274 ~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~-p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~I 352 (867)
..+......+..++ .++++.-|+.++.-+....+.. ++.|.+|....++.
T Consensus 21 ~~l~~l~~ri~~LL-~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~---------------------------- 71 (165)
T PF08167_consen 21 SALHKLVTRINSLL-QSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA---------------------------- 71 (165)
T ss_pred HHHHHHHHHHHHHh-CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------------------------
Confidence 45666666655554 6777888888888888887765 67775554443321
Q ss_pred HHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhH---ccCCcc--------HHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 002911 353 VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA---IKFPEV--------ASTVVHLLMDFLGDSNVASAIDVIIFVRE 421 (867)
Q Consensus 353 V~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la---~kf~~~--------a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ 421 (867)
|.+-+++ ..+...+..++.++..+- ..||+. ...++..++.++.+ ......++..+..
T Consensus 72 ---Ll~~L~~------~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ 140 (165)
T PF08167_consen 72 ---LLSILEK------PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALAT 140 (165)
T ss_pred ---HHHHHcC------CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHH
Confidence 1111111 113344555555554433 234442 34667777777766 5678888999999
Q ss_pred HHHhCccc
Q 002911 422 IIEMNPKL 429 (867)
Q Consensus 422 ii~~~p~l 429 (867)
++..+|..
T Consensus 141 ll~~~ptt 148 (165)
T PF08167_consen 141 LLPHHPTT 148 (165)
T ss_pred HHHHCCcc
Confidence 99998865
No 192
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=72.85 E-value=14 Score=39.52 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=59.1
Q ss_pred hcCCCChHHHHHHHHHHHHhhccCCCcccc------c------chHHHHHHHHccCCChhHHHHHHHHHHhcc----hhh
Q 002911 139 NLQHRHPYIRRNAILAVMAIYKLPQGEQLL------V------DAPEMIEKVLSTEQDPSAKRNAFLMLFTCD----QDR 202 (867)
Q Consensus 139 ~L~d~~pyVRK~A~lal~kI~~l~~~p~li------~------d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~----~~~ 202 (867)
+|+|++|.|.|+|+.|...+|.+ ....+. . .+.+-|-..+ ...+++|+..|+..+..+- +..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~-~~~~i~~~~~~~~~W~~~~~lK~~Il~~~-~~~~~gvk~~~iKFle~vIl~qs~~~ 78 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPL-VFRWICVNPSDEQLWESMNELKDRILSLW-DSENPGVKLAAIKFLERVILVQSPGS 78 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHH-HHHHHS--HHHHHHHHHHHHHHHHHHHGG-GSSSHHHHHHHHHHHHHHHHHTS---
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH-HHHHHcCCchHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 47899999999999999999983 222110 0 1122233333 5557777777777665431 000
Q ss_pred ---HHH---HHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCC--hHHHHHHHHHHHhc
Q 002911 203 ---AIN---YLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPS--TAVIYECAGTLVSL 269 (867)
Q Consensus 203 ---al~---~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s--~aV~~eaa~tL~~L 269 (867)
..+ -----++.++...|++...-|+- +...+++.|...+.+.. +.++..++++|..+
T Consensus 79 ~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~----------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~I 143 (239)
T PF11935_consen 79 SDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEA----------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNI 143 (239)
T ss_dssp TTS---GGGTTS--GGGS-TT-SSS-HHHHHH----------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHH
T ss_pred CCCccccccccCCCHHHcCCCCCcCCHHHHHH----------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 000 00001223444445544433322 44567777777777654 34555555555444
No 193
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=72.84 E-value=26 Score=43.79 Aligned_cols=204 Identities=17% Similarity=0.181 Sum_probs=102.6
Q ss_pred HHHHhcC-CCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hhccCCCcccccchHHHHHH
Q 002911 100 NLRNNLQ-HPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMA-IYKLPQGEQLLVDAPEMIEK 177 (867)
Q Consensus 100 sL~KDL~-~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~k-I~~l~~~p~li~d~~~ll~~ 177 (867)
-+-|-|- -.+|..-.+|.++|..+..|++-.+.....-=.+.|. +-++|.+-.|-.+ +|+--++-+.+ |-+++.
T Consensus 800 Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~-~~~~~r~~~a~~riLykQRfF~~iv---P~l~~~ 875 (1030)
T KOG1967|consen 800 WVTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDS-NPLLKRKGHAEPRILYKQRFFCDIV---PILVSK 875 (1030)
T ss_pred HHHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccC-hHHhhhccccchhHHHHHHHHHhhH---HHHHHH
Confidence 3445552 2346666789999999998887666555444344444 4445544444443 34300111222 223333
Q ss_pred HHccCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChH
Q 002911 178 VLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTA 257 (867)
Q Consensus 178 lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~a 257 (867)
+ .-.+.+.+.+-+.+|.++ ++.++. |+ ++. .-..++..|.+.|.-.+..
T Consensus 876 ~--~t~~~~~K~~yl~~LshV------------l~~vP~-----~v-llp-----------~~~~LlPLLLq~Ls~~D~~ 924 (1030)
T KOG1967|consen 876 F--ETAPGSQKHNYLEALSHV------------LTNVPK-----QV-LLP-----------QFPMLLPLLLQALSMPDVI 924 (1030)
T ss_pred h--ccCCccchhHHHHHHHHH------------HhcCCH-----Hh-hcc-----------chhhHHHHHHHhcCCCccc
Confidence 2 223334444444444433 222211 11 100 0123344455555555555
Q ss_pred HHHHHHHHHHhc---CC--ChHHHHHHHHHHHHHHccCCCHH---HHHHHHHHHHHHHhhChh-hHHHH----HHhheec
Q 002911 258 VIYECAGTLVSL---SS--APTAIRAAANTYSQLLLSQSDNN---VKLIVLDRLNELRSSHRD-IMVDL----IMDVLRA 324 (867)
Q Consensus 258 V~~eaa~tL~~L---s~--~p~~lk~aa~~li~ll~~~sD~N---vk~ivL~~L~~L~~~~p~-~l~~~----~~~il~~ 324 (867)
|+.++-+++-.+ +. -++.+...+..++.+ -++.|+| ||..+|+.|..|.+.-|. .+.++ +..+..+
T Consensus 925 v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsl-s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~ 1003 (1030)
T KOG1967|consen 925 VRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSL-SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKI 1003 (1030)
T ss_pred hhhhHhhhhhHHHHhccccchHHHhHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhc
Confidence 555554444322 11 122333444444332 2345544 799999999999875432 22222 3336678
Q ss_pred ccCCCHHHHHHHHHH
Q 002911 325 LNSPNLDIRRKTLDI 339 (867)
Q Consensus 325 L~d~d~~IR~kaLel 339 (867)
|+|+-.-||+.|.+.
T Consensus 1004 LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 1004 LDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cCcHHHHHHHHHHHH
Confidence 999999999999875
No 194
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.75 E-value=53 Score=32.24 Aligned_cols=89 Identities=9% Similarity=0.199 Sum_probs=55.7
Q ss_pred HcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh-----ChhhH-HHHHHhheec
Q 002911 251 LNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-----HRDIM-VDLIMDVLRA 324 (867)
Q Consensus 251 L~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~-----~p~~l-~~~~~~il~~ 324 (867)
+.+.+-+...+.+..+-. . |..-+.++..+.+.+ +++++++.+.+|..|..+.++ |..+. .++..+++++
T Consensus 14 l~~~dw~~ileicD~In~-~--~~~~k~a~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl 89 (139)
T cd03567 14 NREEDWEAIQAFCEQINK-E--PEGPQLAVRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKL 89 (139)
T ss_pred CCCCCHHHHHHHHHHHHc-C--CccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHH
Confidence 334444566666666533 2 223345666666665 577888888888888887764 22333 2344556666
Q ss_pred cc------CCCHHHHHHHHHHHhcc
Q 002911 325 LN------SPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 325 L~------d~d~~IR~kaLelL~~L 343 (867)
++ ..+..||.+.|+++..-
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 90 VSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred hccccCCCCCCHHHHHHHHHHHHHH
Confidence 64 25789999999998853
No 195
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.49 E-value=67 Score=31.52 Aligned_cols=90 Identities=14% Similarity=0.226 Sum_probs=52.1
Q ss_pred HcCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCh-----hhHH-HHHHh-hee
Q 002911 251 LNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR-----DIMV-DLIMD-VLR 323 (867)
Q Consensus 251 L~s~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p-----~~l~-~~~~~-il~ 323 (867)
+.+.+-+...+.+..+-. .. ..-+.++..+.+.+...+++++.+.+|..|..+.++-. ++.+ ++..+ +.+
T Consensus 14 l~~~dw~~ileicD~In~-~~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~ 90 (141)
T cd03565 14 LQSEDWGLNMEICDIINE-TE--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVK 90 (141)
T ss_pred CCCcCHHHHHHHHHHHhC-CC--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHH
Confidence 334444566666666543 21 22356667777777555688888888888888876422 2222 22333 344
Q ss_pred ccc---CCCHHHHHHHHHHHhcc
Q 002911 324 ALN---SPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 324 ~L~---d~d~~IR~kaLelL~~L 343 (867)
+++ +++..||.+.|+++...
T Consensus 91 ~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 91 LINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHcccCCCcHHHHHHHHHHHHHH
Confidence 443 24557788877777643
No 196
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=72.26 E-value=38 Score=34.44 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=47.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc---chhhHHHHHHHH
Q 002911 134 PSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC---DQDRAINYLLTH 210 (867)
Q Consensus 134 ~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei---~~~~al~~L~~~ 210 (867)
+.+.+...+.++++||.|+.++.+.+. . ..-.+.+.++++..+ .|.+..|+.+.--+|.++ +|+.+++|+.+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~--~-~~~~~~~l~~~~~~~-~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIK--K-ETDFDLLLEIIERLL-HDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH--h-cccHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 566777888899999999988888777 4 122334456676644 566677766656666655 355556666544
No 197
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=71.36 E-value=1.8e+02 Score=32.62 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhccCCC-cccccchHHHHHHHHccCCChhHHH
Q 002911 112 IRGVTLRFLCRLNETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQG-EQLLVDAPEMIEKVLSTEQDPSAKR 189 (867)
Q Consensus 112 IRglALr~Ls~I~~~el~e~L~~~V~~~L~-d~~pyVRK~A~lal~kI~~l~~~-p~li~d~~~ll~~lL~~D~D~~v~~ 189 (867)
-|.+..+.|+.+....+.+.+...+...+. ..|.-+...++.|+.+-+. .. .++-++..+.+.+-+ .|+.+.+++
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~--~~~~~~~~~~~~~~~kGl-~~kk~~vR~ 79 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLF--FLSSELPKKVVDAFKKGL-KDKKPPVRR 79 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH--HhCcCCCHHHHHHHHHHh-cCCCCcHHH
Confidence 355566666666654455555555555654 4788888888888888776 44 333344566676666 788888888
Q ss_pred HHHHHHHhcch
Q 002911 190 NAFLMLFTCDQ 200 (867)
Q Consensus 190 ~A~~~L~ei~~ 200 (867)
.-+..+.++..
T Consensus 80 ~w~~~~~~~~~ 90 (339)
T PF12074_consen 80 AWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHh
Confidence 77776665443
No 198
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=70.40 E-value=1.5e+02 Score=33.23 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 108 PNEYIRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 108 pNe~IRglALr~Ls~I~---~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
.||-....++..++.=- ..++-+.++..+++.+.++.+-|||.-+.+++.++.
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 57777777777766522 567788999999999999999999999999999875
No 199
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=70.31 E-value=12 Score=43.41 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=34.7
Q ss_pred CcchHHHHHHHHHHH-hhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC
Q 002911 67 DHTIQKLLLLYLEII-DKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN 124 (867)
Q Consensus 67 d~~lKkL~Ylyl~~~-~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I~ 124 (867)
+.--||..|=||..+ |..++-|. |-++ .--|+|||+.-|++||..++.|-
T Consensus 25 ~~~~~~~~ygyw~~~~pd~~~~g~--p~l~------~l~lkd~~~~~ra~alqv~~~~l 75 (728)
T KOG4535|consen 25 KSIEKKVLYGYWSAFIPDTPELGS--PSLM------TLTLKDPSPKTRACALQVLSAIL 75 (728)
T ss_pred hhhhhhhhhceeeeecCCCCCCCC--ceee------EEecCCCChhHHHHHHHHHHHHH
Confidence 345699999999985 33333232 2221 23589999999999999988763
No 200
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=69.63 E-value=11 Score=37.65 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcccccc-hHHHHHHHHccCCChhHHHHHHH---HHHhcchhhHHH------HHHHHh
Q 002911 142 HRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEMIEKVLSTEQDPSAKRNAFL---MLFTCDQDRAIN------YLLTHV 211 (867)
Q Consensus 142 d~~pyVRK~A~lal~kI~~l~~~p~li~d-~~~ll~~lL~~D~D~~v~~~A~~---~L~ei~~~~al~------~L~~~l 211 (867)
...+.||-.|.+++.++.+ ..++-..+ +.+.+...+ .+.+..-...|+. +|..+.|+-+-. ++..++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~--~~~~~~~~~~~~~i~~~~-~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD--AAREEFKEKISDFIESLL-DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHH-ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 4678899999999999876 44433322 234555443 3333334444444 444455554321 111222
Q ss_pred hhcC--ccchHHHHHHHHHHHHhhhcCc---hhHHHHHHHHHHHHc-CCChH-HHHHHHHHHHh
Q 002911 212 DRVS--EWGELLQMVVLELIRKVCRTNK---GEKGKYIKIIISLLN-APSTA-VIYECAGTLVS 268 (867)
Q Consensus 212 ~~i~--~~~p~lQ~~iL~ll~~~~~~~p---~~~~~li~~L~~lL~-s~s~a-V~~eaa~tL~~ 268 (867)
..+. ..++-.|..++++|..-|.... .....+++.|...+. +.+.. |+.-|+-.|++
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 2232 4567789999999987765321 124567788888884 44555 66666666654
No 201
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.30 E-value=2e+02 Score=32.46 Aligned_cols=305 Identities=14% Similarity=0.176 Sum_probs=155.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccc-hHHHH
Q 002911 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEMI 175 (867)
Q Consensus 97 v~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d-~~~ll 175 (867)
=+..+.+.|.+ +--.+.|-|++..=... .+.++.... .-+.++.-|=+++.-|+.+.-+ ..|++... .+.++
T Consensus 78 E~s~ll~~l~d--~ck~~~A~r~la~~~ga--~~~~it~~~-la~~~~~~~l~ksL~al~~lt~--~qpdl~da~g~~vv 150 (461)
T KOG4199|consen 78 ETTELLEQLAD--ECKKSLAHRVLAGKNGA--HDALITLLE-LAESPNESVLKKSLEAINSLTH--KQPDLFDAEAMAVV 150 (461)
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHhccCCC--cchhhhHHH-HhhCCchhHHHHHHHHHHHhhc--CCcchhccccHHHH
Confidence 34566666764 77788999998754321 122233333 4678899999999999999988 78887753 46666
Q ss_pred HHHHc-cCCChhHHHHHHHHHHhcchhhHHHHHHHHhhhcCccchHHHHHHHHHHHHh-hhcCc-hhHHHHHHHHHHHHc
Q 002911 176 EKVLS-TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKV-CRTNK-GEKGKYIKIIISLLN 252 (867)
Q Consensus 176 ~~lL~-~D~D~~v~~~A~~~L~ei~~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~-~~~~p-~~~~~li~~L~~lL~ 252 (867)
-++|. +-.+..+.-..|..+..-+-. +..-+ -.++-..+++++... .+... .....+...+.-++.
T Consensus 151 v~lL~~~~~~~dlt~~~~~~v~~Ac~~------hE~nr-----Q~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 151 LKLLALKVESEEVTLLTLQWLQKACIM------HEVNR-----QLFMELKILELILQVLNREGKTRTVRELYDAIRALLT 219 (461)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH------hHHHH-----HHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcC
Confidence 66653 112222222222222111100 00111 134445555555422 11110 111222233333333
Q ss_pred CCChHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHhhee
Q 002911 253 APSTAVI----YECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD-----LIMDVLR 323 (867)
Q Consensus 253 s~s~aV~----~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~-----~~~~il~ 323 (867)
..+--|. |+-|+++.... ....+++.+-..-||++---..-.|..|.- +.++.+. =+..+++
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e~--------~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~ 290 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKEG--------ILTALTEALQAGIDPDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLR 290 (461)
T ss_pred CCceeeecchhhHHHHHHHHhh--------hHHHHHHHHHccCCccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHH
Confidence 3222222 22333333321 122334443333455655444445555442 2222221 2344677
Q ss_pred cccCC-CHH---HHHHHHHHHhccCCCCcHHH-HHH-----HHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccH
Q 002911 324 ALNSP-NLD---IRRKTLDIVLELITPRNINE-VVL-----MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA 393 (867)
Q Consensus 324 ~L~d~-d~~---IR~kaLelL~~Lv~~~Nv~~-IV~-----~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a 393 (867)
|++|. +.. .-+.++.+|..|+.++.++. ||. .+..-+.+. ..++.+-++..-.|..++.|-|+-+
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-----~~~p~Vi~~~~a~i~~l~LR~pdhs 365 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-----SDDPLVIQEVMAIISILCLRSPDHS 365 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-----CCChHHHHHHHHHHHHHHhcCcchH
Confidence 88773 333 44788999999887666554 322 122111222 2478899999999999999998876
Q ss_pred HHHHH-----HHHHHHcCCC--cccHHHHHHHHHHHHHhCcccHHHH
Q 002911 394 STVVH-----LLMDFLGDSN--VASAIDVIIFVREIIEMNPKLRVSI 433 (867)
Q Consensus 394 ~~~v~-----~Ll~lL~~~~--~~v~~evi~~l~~ii~~~p~lr~~i 433 (867)
...++ ..++-++-.. ..+...+...||+++.+..+.+.-+
T Consensus 366 a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~ 412 (461)
T KOG4199|consen 366 AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL 412 (461)
T ss_pred HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH
Confidence 65543 3334343322 1233345567777776655555433
No 202
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.15 E-value=2.6e+02 Score=33.57 Aligned_cols=101 Identities=12% Similarity=0.190 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCC-cc-cHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccc-hHh
Q 002911 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN-VA-SAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIR-AAR 448 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~-~~-v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~-~~~ 448 (867)
.+||......+..++--.. .+.++..+..-+..++ +- ..+.++-+++.++.+.+--...++...++.+-+.. ..+
T Consensus 366 ~~fR~~v~dvl~Dv~~iig--s~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIG--SDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchh
Confidence 3566666666666553322 2355555555455433 22 23334456677766655555667888887775533 345
Q ss_pred HHHHHhhHhhccCCCCCcHHHHHHHH
Q 002911 449 VCTCALWIIGEYCQSLSEVENGIATI 474 (867)
Q Consensus 449 v~~~alWiLGEY~~~~~~i~~~~~~i 474 (867)
+++..+-.+|+|++..+..++.++.+
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p~~le~v 469 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHPELLEPV 469 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99999999999999887655554443
No 203
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=68.97 E-value=57 Score=29.61 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=51.9
Q ss_pred ecceeEEEEEEeecCcccccceEEEEEecCCeEEeecCCcc-ccCCCCeEEEEEEEEEEeccc--ceEEEEEEEec
Q 002911 737 HHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNY-TLAPESSKQIKANIKVSSTET--GVIFGNIVYET 809 (867)
Q Consensus 737 ~~~di~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~-~l~p~~~~~~~~~ikv~ste~--g~ifg~i~y~~ 809 (867)
+.--+.+.+...|.|...+.|+.++++.--.+++--.|++- +|.|++. ++-.++|.-... ...=-.|.|..
T Consensus 16 ~~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~--i~q~~~i~~~~~~~~~~~~~vsy~~ 89 (104)
T smart00809 16 RPGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQ--ITQVLKVENPGKFPLRLRLRLSYLL 89 (104)
T ss_pred CCCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCC--EEEEEEEECCCCCCEEEEEEEEEEE
Confidence 45568999999999999999999999988888888777754 6999875 455555554333 23334455554
No 204
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=68.14 E-value=70 Score=29.69 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=56.1
Q ss_pred eeecceeEEEEEEeecCcccccceEEEEEecCCeEEeecCC-ccccCCCCeEEEEEEEEEEecccc------eEEEEEEE
Q 002911 735 TVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQ-NYTLAPESSKQIKANIKVSSTETG------VIFGNIVY 807 (867)
Q Consensus 735 ~v~~~di~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~-~~~l~p~~~~~~~~~ikv~ste~g------~ifg~i~y 807 (867)
.-++.-+.+.+...|++...+.|++++++.--.+++-=.|+ .-+|+|++..+-...|.. +.-++ ..==.|.|
T Consensus 20 ~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~-~~~~~~~~~~l~~~~~vsy 98 (115)
T PF02883_consen 20 SPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN-SPFSEPTPKPLKPRLRVSY 98 (115)
T ss_dssp CCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE-SS-BSTTSSTTEEEEEEEE
T ss_pred cCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE-eecccCCCCCcCeEEEEEE
Confidence 34788899999999999999999999998888888877776 678999888888777777 55555 55556677
Q ss_pred ecC
Q 002911 808 ETS 810 (867)
Q Consensus 808 ~~~ 810 (867)
...
T Consensus 99 ~~~ 101 (115)
T PF02883_consen 99 NVG 101 (115)
T ss_dssp EET
T ss_pred EEC
Confidence 753
No 205
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=68.01 E-value=40 Score=39.33 Aligned_cols=154 Identities=17% Similarity=0.250 Sum_probs=88.1
Q ss_pred CCCChHHHHHHHHHHHHhhc-cC------CCcccccchH-----HHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHH
Q 002911 141 QHRHPYIRRNAILAVMAIYK-LP------QGEQLLVDAP-----EMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLL 208 (867)
Q Consensus 141 ~d~~pyVRK~A~lal~kI~~-l~------~~p~li~d~~-----~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~ 208 (867)
.|..+-||..|..|+....+ +| -..-++||-+ .++.-- ++|+++.|+.-|+..+..+-... ..||.
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~-lkd~~~~~ra~alqv~~~~l~gs-k~fls 83 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLT-LKDPSPKTRACALQVLSAILEGS-KQFLS 83 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEe-cCCCChhHHHHHHHHHHHHHHhh-HHHHH
Confidence 44566788888888776554 10 1113445532 333212 38999999998888877665432 34544
Q ss_pred HHhhhc-CccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcC-CChHHHHHHHHHHHhcCC-ChH-HH-----HHH
Q 002911 209 THVDRV-SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNA-PSTAVIYECAGTLVSLSS-APT-AI-----RAA 279 (867)
Q Consensus 209 ~~l~~i-~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s-~s~aV~~eaa~tL~~Ls~-~p~-~l-----k~a 279 (867)
...+.- ..+.||.-...-.++. ..+++.-.|.. .++-|+-+|.++|-.+-+ .|- .+ ...
T Consensus 84 ~a~~~~~~~ftpf~v~~a~si~~------------~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~ 151 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSVMIACSIRE------------LHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKV 151 (728)
T ss_pred HHhccCCcCCCchHHHHHHHHHH------------HHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 333221 2467774332222221 12344444443 445688888888877633 231 11 122
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhh
Q 002911 280 ANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (867)
Q Consensus 280 a~~li~ll~~~sD~Nvk~ivL~~L~~L~~~ 309 (867)
.. -++.+++++|+||+.-+|-.+..|...
T Consensus 152 ~~-~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 152 WN-QIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HH-HHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 22 245567899999999999999888764
No 206
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.18 E-value=3.6e+02 Score=34.53 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=75.5
Q ss_pred cCCCCCCCchH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcCC-----chhhHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Q 002911 84 TDAKGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLN-----ETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVM 156 (867)
Q Consensus 84 ~d~dg~l~~Em-iLv~NsL~KDL~~pNe~IRglALr~Ls~I~-----~~el~e~L~~~V~~~L~-d~~pyVRK~A~lal~ 156 (867)
+..+...+.+| .+++|.+--.+++|--|.|+.|.-+++.+. .+..+...+..+.+||. |++--||=-|++|+.
T Consensus 449 L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 449 LLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred HccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHH
Confidence 44445556777 788899999999999999999999988765 67778888899999997 899999999999999
Q ss_pred HhhccCCCccc----ccchHHHHHHHH
Q 002911 157 AIYKLPQGEQL----LVDAPEMIEKVL 179 (867)
Q Consensus 157 kI~~l~~~p~l----i~d~~~ll~~lL 179 (867)
.+.. ..++. -+..|++++++|
T Consensus 529 ~fI~--~~~~~~e~~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 529 SFIS--NQEQADEKVSAHVPPIMQELL 553 (1010)
T ss_pred HHHh--cchhhhhhHhhhhhHHHHHHH
Confidence 9877 45433 234567777765
No 207
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.74 E-value=3.4e+02 Score=34.05 Aligned_cols=324 Identities=16% Similarity=0.159 Sum_probs=152.5
Q ss_pred hhhHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhhc-cCCCcccc----cchHHHHHHHHc--cCCChhH-HHHHHHHHH
Q 002911 126 TEIIEPLIPSVLQNLQHR-HPYIRRNAILAVMAIYK-LPQGEQLL----VDAPEMIEKVLS--TEQDPSA-KRNAFLMLF 196 (867)
Q Consensus 126 ~el~e~L~~~V~~~L~d~-~pyVRK~A~lal~kI~~-l~~~p~li----~d~~~ll~~lL~--~D~D~~v-~~~A~~~L~ 196 (867)
.|+.+-++-+..+.|.+. +--||=.|+-++.-... -++.++.. |.....+-++|. .+-|..+ +-+.+..|.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 456666777888888887 56666666666655433 00222221 111222222221 2333322 223333333
Q ss_pred h-cchhh------HHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcC----CChH-H-HHHHH
Q 002911 197 T-CDQDR------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNA----PSTA-V-IYECA 263 (867)
Q Consensus 197 e-i~~~~------al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s----~s~a-V-~~eaa 263 (867)
+ .++.- -++||..+.+ ..+..|.+++.+|..++.+.+.=.+....+...+.++++- ++|. | ..|=.
T Consensus 601 ~r~~e~I~P~~~~ivq~lp~LWe-~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLPLLWE-ESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHh-hhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhH
Confidence 2 22211 1344444443 2456789999999999988764333333444455544442 2332 2 22322
Q ss_pred HHHH--hcCCCh---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHH-HHHhhChhhHHHHHHhheecccCCCHHHHHHHH
Q 002911 264 GTLV--SLSSAP---TAIRAAANTYSQLLLSQSDNNVKLIVLDRLN-ELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTL 337 (867)
Q Consensus 264 ~tL~--~Ls~~p---~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~-~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaL 337 (867)
--|. .+...| +.+-.....+.-.+ +.+..|++.+ |..+. .+.-.++.++++|...|++-+++-=.+||.+.+
T Consensus 680 meLW~~~L~n~~~l~p~ll~L~p~l~~~i-E~ste~L~t~-l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl 757 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLTPELLLLFPHLLYII-EQSTENLPTV-LMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGL 757 (978)
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHH-HhhhhhHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2221 222221 12222333333332 3333344432 22221 122246677777777777666655556777777
Q ss_pred HHHhccCCCCcHHHHHHHHHHH---HHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHH
Q 002911 338 DIVLELITPRNINEVVLMLKKE---VVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAID 414 (867)
Q Consensus 338 elL~~Lv~~~Nv~~IV~~L~ke---l~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~e 414 (867)
-.+++++ ..+.+- +.... ....-..+.++| -...+||.+..||+.++-+.+-.+. .
T Consensus 758 ~avLkiv---------eili~t~~il~~~~------~~~~L~~lf~~I-~~~~~yP~~~~~yl~vvaRi~l~n~-~---- 816 (978)
T KOG1993|consen 758 QAVLKIV---------EILIKTNPILGSLL------FSPLLSRLFLSI-AENDKYPYVMGEYLLVVARISLRNP-S---- 816 (978)
T ss_pred HHHHHHH---------HHHHhhhHHHHhhh------cchhhHHHHHHH-HhCCCCchhHHHHHHHHHHHHhcCh-H----
Confidence 7666432 222110 00000 112233344444 1234789888899888877544332 1
Q ss_pred HHHHHHHHHHhCc---ccHHHHHHHHHHHhcccchHhH-HHHHhhHhhccCCCCCcHHHHHHHHHH
Q 002911 415 VIIFVREIIEMNP---KLRVSIITRLLDNFYQIRAARV-CTCALWIIGEYCQSLSEVENGIATIKQ 476 (867)
Q Consensus 415 vi~~l~~ii~~~p---~lr~~il~~L~~~L~~i~~~~v-~~~alWiLGEY~~~~~~i~~~~~~i~~ 476 (867)
+ +..+++..+ .+-..++..-+..+++|..|+- +-.++-+.+=....-+++...+..|-+
T Consensus 817 ~---~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~n 879 (978)
T KOG1993|consen 817 L---FMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMN 879 (978)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHH
Confidence 2 222222323 2223345555567788887765 333444444445555555555554443
No 208
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=65.17 E-value=5.2 Score=30.83 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=28.7
Q ss_pred HHHHHhhChhhHH--HHHHhheecccCCCHHHHHHHHHHH
Q 002911 303 LNELRSSHRDIMV--DLIMDVLRALNSPNLDIRRKTLDIV 340 (867)
Q Consensus 303 L~~L~~~~p~~l~--~~~~~il~~L~d~d~~IR~kaLelL 340 (867)
|..+....|.++. .....+.+.+.|+++.||..+++++
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5566667777764 3445566779999999999999875
No 209
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=64.16 E-value=16 Score=31.65 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=36.9
Q ss_pred eeEEEEEEeecCcccccceEEEEEecCCeEEeecCCcc-ccCCCCeEEEEEEEEEEe-cccc
Q 002911 740 DIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNY-TLAPESSKQIKANIKVSS-TETG 799 (867)
Q Consensus 740 di~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~-~l~p~~~~~~~~~ikv~s-te~g 799 (867)
.+.+.+-+.|.....++|+.+.+..-.+..+-..|... +|.|++..++...|+|.+ +..|
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G 67 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPG 67 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SE
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCc
Confidence 45678899999999999999999776666643444333 799999999999999974 4445
No 210
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.07 E-value=38 Score=34.03 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=48.0
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCC-cccc-cc---hHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG-EQLL-VD---APEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~-p~li-~d---~~~ll~~lL~~D~D~~v~~~A~~~L~ei 198 (867)
....+..+...|.+.|.+++++-|..++.-+..+.+ .+ ++.. .. |...+.+.|.+...+.++..|+.+|..+
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~--~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVE--QCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445566777788888888889999888877777777 54 4443 22 4455555565555566677777666544
No 211
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.66 E-value=8.2 Score=39.41 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=53.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHhhcCCch-hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc
Q 002911 100 NLRNNLQHPNEYIRGVTLRFLCRLNET-EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL 167 (867)
Q Consensus 100 sL~KDL~~pNe~IRglALr~Ls~I~~~-el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l 167 (867)
.+.+=..|+|+++|-.|.-++...... .-.+.+...+..++.|.+.||||...-++..+++ .+|+.
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~--~~~~~ 175 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK--KDPER 175 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--hCHHH
Confidence 344445789999999888888775443 5567788888889999999999999999999999 76643
No 212
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=63.06 E-value=3.9e+02 Score=33.43 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcC
Q 002911 64 PSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQ 141 (867)
Q Consensus 64 ~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I--~~~el~e~L~~~V~~~L~ 141 (867)
++++..-|+|+..||+.+-|. +... .+..|---..+|=+.++..||.++..+ .-||==..|+..+++-|.
T Consensus 280 ~~~~~~~k~Ll~WyfE~~LK~-----ly~r---fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlG 351 (988)
T KOG2038|consen 280 TNKRLRDKILLMWYFEHELKI-----LYFR---FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLG 351 (988)
T ss_pred cccccccceehHHHHHHHHHH-----HHHH---HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcC
Confidence 467777888999999987332 1112 233333333456799999999988776 346666778889999999
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHcc-CCChhHHHHHHHHHHhc
Q 002911 142 HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLST-EQDPSAKRNAFLMLFTC 198 (867)
Q Consensus 142 d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~-D~D~~v~~~A~~~L~ei 198 (867)
|+..-+--+|..-|..+-. ..|..---+.+-|++|+.. .-+.....-|+..|.++
T Consensus 352 DpqnKiaskAsylL~~L~~--~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 352 DPQNKIASKASYLLEGLLA--KHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred CcchhhhhhHHHHHHHHHh--hCCcceeehHHHHHHHHcccCccccceeehhhhhhhh
Confidence 9999999999988988888 6776544456778887642 22223344555555544
No 213
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=62.65 E-value=2.8e+02 Score=33.68 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=78.8
Q ss_pred HhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHH------
Q 002911 340 VLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAI------ 413 (867)
Q Consensus 340 L~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~------ 413 (867)
-..+.+.+ .+.+|..+.+- ... ..+++++...++-++.++...+.....|++.|++.+.-.......
T Consensus 63 ~Vs~Ld~~-~~~LV~ail~~--~W~----~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~ 135 (563)
T PF05327_consen 63 CVSLLDSS-CKQLVEAILSL--NWL----GRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPP 135 (563)
T ss_dssp GGGGG-SC-CHHHHHHHHT---TGG----GS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH------
T ss_pred HHHHhhhH-HHHHHHHHHcC--CCC----CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhh
Confidence 33455666 88888877643 222 346789999999999999888999999999999877655433222
Q ss_pred --------HHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHh-----HHHHHhhHhhccCCCC
Q 002911 414 --------DVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAAR-----VCTCALWIIGEYCQSL 464 (867)
Q Consensus 414 --------evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~-----v~~~alWiLGEY~~~~ 464 (867)
-+-.+++.|++..|.....+...|.+.++..+.+. -.+.++|+. +|+...
T Consensus 136 ~~~~~~~~~vH~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~P~L 198 (563)
T PF05327_consen 136 EKRREIYERVHDALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYCPEL 198 (563)
T ss_dssp ---------HHHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-GGG
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cchHHH
Confidence 25678999999999988888888888888765432 367788877 676443
No 214
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=61.85 E-value=3.3e+02 Score=32.17 Aligned_cols=92 Identities=8% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc-----CCcc---HHHHHHHHHH
Q 002911 331 DIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK-----FPEV---ASTVVHLLMD 402 (867)
Q Consensus 331 ~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k-----f~~~---a~~~v~~Ll~ 402 (867)
.....+-+++-+|+.+..-...+..|..-+..... ....+...-+=+|.-++.+.-. +|.. ...+++.+..
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~-~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~ 308 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDP-QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLN 308 (464)
T ss_pred ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCc-cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHH
Confidence 67788888999999999988888888866622111 1123455556677777776544 3332 2358889999
Q ss_pred HHcCCCcccHHHHHHHHHHHH
Q 002911 403 FLGDSNVASAIDVIIFVREII 423 (867)
Q Consensus 403 lL~~~~~~v~~evi~~l~~ii 423 (867)
.++..++.+..|++..+..++
T Consensus 309 al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 309 ALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHhCCCCeehHHHHHHHHHHH
Confidence 999888889999999888888
No 215
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=61.80 E-value=9.1 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHH
Q 002911 131 PLIPSVLQNLQHRHPYIRRNAILA 154 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~la 154 (867)
.+...|.+.+.|++|-||+.|+-.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 567788888888888888888754
No 216
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=61.64 E-value=18 Score=33.29 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=41.3
Q ss_pred ecceeEEEEEEeecCcccccceEEEE-----EecCCeE--EeecCCccccCCCCeEEEEEEE
Q 002911 737 HHYDIVLDVTVINRTKETLQNLCLEL-----ATMGDLK--LVERPQNYTLAPESSKQIKANI 791 (867)
Q Consensus 737 ~~~di~ldvl~vNqt~~tlqn~~~el-----~t~g~lk--~v~~p~~~~l~p~~~~~~~~~i 791 (867)
-+-|+.+-+-+.|.+++.|+|+++-+ .-.|-++ .-.+....+|+|++..+++..|
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 45689999999999999999988887 5556653 6677778889999988776655
No 217
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.35 E-value=16 Score=34.87 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 133 IPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 133 ~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
-..|.++++|++|-||+.|+.|+.++..
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999998754
No 218
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=60.28 E-value=2.9e+02 Score=31.08 Aligned_cols=226 Identities=14% Similarity=0.189 Sum_probs=102.4
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc-cccc--------hHHHHHHHHccCCChhHHHHHHHHH
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ-LLVD--------APEMIEKVLSTEQDPSAKRNAFLML 195 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~-li~d--------~~~ll~~lL~~D~D~~v~~~A~~~L 195 (867)
-..+++.++|.++..|.|.+..|+--|+-.++.|.. .++. -+.. ..+++-..+ ...|..|..+|+..+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilE--dcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesi 152 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILE--DCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESI 152 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHh--cCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHH
Confidence 344556666666666666666666666666666655 3330 1110 011111222 344556666666666
Q ss_pred Hhcchhh-HHHHHH--HHhhh------cCccchHHHHHHHHHHHHhhhcCchh-----HHHHHHHHHHHHcCC-ChHHHH
Q 002911 196 FTCDQDR-AINYLL--THVDR------VSEWGELLQMVVLELIRKVCRTNKGE-----KGKYIKIIISLLNAP-STAVIY 260 (867)
Q Consensus 196 ~ei~~~~-al~~L~--~~l~~------i~~~~p~lQ~~iL~ll~~~~~~~p~~-----~~~li~~L~~lL~s~-s~aV~~ 260 (867)
..+..-. ++.-+. +.++. --..+++....+++++-++....|.. +.-+++.+..-|..+ +.-|+.
T Consensus 153 krialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 153 KRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 5543211 111110 00000 01244566777777777765554432 334556665555553 334666
Q ss_pred HHHHHHHhcCCC---hHHH-H-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHh------hChhh-HHHH---HHhheec
Q 002911 261 ECAGTLVSLSSA---PTAI-R-AAANTYSQLLL-SQSDNNVKLIVLDRLNELRS------SHRDI-MVDL---IMDVLRA 324 (867)
Q Consensus 261 eaa~tL~~Ls~~---p~~l-k-~aa~~li~ll~-~~sD~Nvk~ivL~~L~~L~~------~~p~~-l~~~---~~~il~~ 324 (867)
.|+.....+.-. .+.+ + .+..-++..+. .++||--++-+|-...++.. ..|+. .+.+ +...+..
T Consensus 233 nciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEm 312 (524)
T KOG4413|consen 233 NCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEM 312 (524)
T ss_pred hHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHh
Confidence 666666555311 0110 0 01111111111 24566555544333333221 11211 1111 1112334
Q ss_pred ccCCCHHHHHHHHHHHhccCCCCcHHHHH
Q 002911 325 LNSPNLDIRRKTLDIVLELITPRNINEVV 353 (867)
Q Consensus 325 L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV 353 (867)
....|++..--|++.+..|++..-=.+++
T Consensus 313 iEmnDpdaieaAiDalGilGSnteGadll 341 (524)
T KOG4413|consen 313 IEMNDPDAIEAAIDALGILGSNTEGADLL 341 (524)
T ss_pred hhcCCchHHHHHHHHHHhccCCcchhHHH
Confidence 44556667777888888777654444433
No 219
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=58.79 E-value=16 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHH
Q 002911 112 IRGVTLRFLCRLNETEIIEPLIPSV 136 (867)
Q Consensus 112 IRglALr~Ls~I~~~el~e~L~~~V 136 (867)
||..|.+.|+.++.++-+++|+..+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6889999999999988877776544
No 220
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.79 E-value=2.8e+02 Score=30.18 Aligned_cols=107 Identities=7% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCc
Q 002911 330 LDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNV 409 (867)
Q Consensus 330 ~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~ 409 (867)
..++ ...+.+..++...+...+-..+..+-.. .+-...+|-+.+++.|+.-- ||.....++..|+++|.++.+
T Consensus 130 ~~~~-~~A~~La~~a~~~~~~~La~il~~ya~~----~fr~~~dfl~~v~~~l~~~f--~P~~~~~~l~~Ll~lL~n~~~ 202 (262)
T PF14225_consen 130 QECI-EIAEALAQVAEAQGLPNLARILSSYAKG----RFRDKDDFLSQVVSYLREAF--FPDHEFQILTFLLGLLENGPP 202 (262)
T ss_pred HHHH-HHHHHHHHHHHhCCCccHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhCCcH
Confidence 4444 4446666666655555544444333222 22224567777777776422 478888999999999999888
Q ss_pred ccHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHhcc
Q 002911 410 ASAIDVIIFVREIIEMNPK---LRVSIITRLLDNFYQ 443 (867)
Q Consensus 410 ~v~~evi~~l~~ii~~~p~---lr~~il~~L~~~L~~ 443 (867)
-....+...++-++...+- .-...+..+.+.+..
T Consensus 203 w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t 239 (262)
T PF14225_consen 203 WLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC
Confidence 8888888888888753211 223455555555543
No 221
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.73 E-value=65 Score=32.30 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHHHHhhccCCCcc
Q 002911 143 RHPYIRRNAILAVMAIYKLPQGEQ 166 (867)
Q Consensus 143 ~~pyVRK~A~lal~kI~~l~~~p~ 166 (867)
.++.+|+.|+-+++-|.- .+|.
T Consensus 23 ~s~~iR~E~lr~lGilGA--LDP~ 44 (160)
T PF11865_consen 23 QSQSIRREALRVLGILGA--LDPY 44 (160)
T ss_pred CCHHHHHHHHHHhhhccc--cCcH
Confidence 346677777777776666 4553
No 222
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=57.15 E-value=49 Score=29.30 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=51.0
Q ss_pred ecceeEEEEEEeecCcccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecccceEEEEEEEecCC
Q 002911 737 HHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSN 811 (867)
Q Consensus 737 ~~~di~ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste~g~ifg~i~y~~~~ 811 (867)
-.-++.+.+.|.|+-..+..++.+.|.-.|... ....-..|+|++..++..++... ..|...-.++.|..+
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~--~~~~i~~L~~g~~~~v~~~~~~~--~~G~~~i~~~iD~~n 87 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSV--STVTIPSLAPGESETVTFTWTPP--SPGSYTIRVVIDPDN 87 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE--EEEEESEB-TTEEEEEEEEEE-S--S-CEEEEEEEESTTT
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCcee--ccEEECCcCCCcEEEEEEEEEeC--CCCeEEEEEEEeeCC
Confidence 345677888999998889999999998877765 33333579999999998888887 778777777777653
No 223
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.03 E-value=2.9e+02 Score=30.12 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCC
Q 002911 328 PNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDS 407 (867)
Q Consensus 328 ~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~ 407 (867)
-|+++|..++.....-.+..-++.+.. .+.+ +.+++.|..++.+++..- .++.+.-+++++-++
T Consensus 167 i~~dlr~~v~~~~~~~g~~~~~~~l~~----~~~~------~~~~~~k~~~l~aLa~~~------d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 167 IPPDLRWAVYCAGVRNGDEEEWDFLWE----LYKN------STSPEEKRRLLSALACSP------DPELLKRLLDLLLSN 230 (324)
T ss_dssp S-HHHHHHHHHHHTTS--HHHHHHHHH----HHHT------TSTHHHHHHHHHHHTT-S-------HHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhhHhhHHHHHH----HHhc------cCCHHHHHHHHHhhhccC------CHHHHHHHHHHHcCC
Confidence 478899998888887766555555444 3332 346789999999996322 235566666666554
Q ss_pred CcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhccc
Q 002911 408 NVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQI 444 (867)
Q Consensus 408 ~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i 444 (867)
...-.+++...+..+...+|.-+..+.+-+.+.++.+
T Consensus 231 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i 267 (324)
T PF11838_consen 231 DKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAI 267 (324)
T ss_dssp STS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHH
T ss_pred cccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Confidence 3344556666666666577887777777777766554
No 224
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=56.98 E-value=28 Score=42.35 Aligned_cols=99 Identities=12% Similarity=0.232 Sum_probs=62.4
Q ss_pred HHHhcCCCCHHHHHHHHHHhh----cCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc-cccchHHHH
Q 002911 101 LRNNLQHPNEYIRGVTLRFLC----RLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ-LLVDAPEMI 175 (867)
Q Consensus 101 L~KDL~~pNe~IRglALr~Ls----~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~-li~d~~~ll 175 (867)
|.|=+..++..||..=|+-+- .+..+.+-..++|.+...+.|.++.+|-.++-++.-+... .++. +--+....+
T Consensus 335 l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k-L~~~~Ln~Ellr~~ 413 (690)
T KOG1243|consen 335 LLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK-LSKRNLNGELLRYL 413 (690)
T ss_pred HHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh-hchhhhcHHHHHHH
Confidence 344455666666666665443 3445556666777777777777777777777666655542 2333 334455666
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchh
Q 002911 176 EKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 176 ~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
.+. ..|.++..+.|.-.+|..|.+.
T Consensus 414 ar~-q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 414 ARL-QPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred Hhh-CccccCcccccceeeecccccc
Confidence 663 5677777777777777777776
No 225
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=56.70 E-value=1.5e+02 Score=33.68 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=81.0
Q ss_pred HHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHcc-C---Cc
Q 002911 316 DLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK-F---PE 391 (867)
Q Consensus 316 ~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~k-f---~~ 391 (867)
-|...|...+.+++..-|..||+- |-+..-+..++..+...+........+.+...-..+++.+..+..+ + .+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~s---L~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQS---LRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH---hccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 344444455555666777776655 5577778888887776665433211111344444455555544432 1 12
Q ss_pred cHHHHHHHHHHHHcCC----C------cccHHHHHHHHHHHHHh----CcccHHHHHHHHHHHhcccchHh-HHHHHhhH
Q 002911 392 VASTVVHLLMDFLGDS----N------VASAIDVIIFVREIIEM----NPKLRVSIITRLLDNFYQIRAAR-VCTCALWI 456 (867)
Q Consensus 392 ~a~~~v~~Ll~lL~~~----~------~~v~~evi~~l~~ii~~----~p~lr~~il~~L~~~L~~i~~~~-v~~~alWi 456 (867)
-....+..++.++-.. . -..+..+...+..++++ +|.++.+++..|...|-+-+.+- ..=+++-.
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 2234555555554211 1 14555666777777765 67888889989988886644333 35566666
Q ss_pred hhccCC
Q 002911 457 IGEYCQ 462 (867)
Q Consensus 457 LGEY~~ 462 (867)
++++|.
T Consensus 335 L~~lG~ 340 (343)
T cd08050 335 LSALGP 340 (343)
T ss_pred HHHhCc
Confidence 665553
No 226
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=56.48 E-value=3.9e+02 Score=31.32 Aligned_cols=195 Identities=18% Similarity=0.175 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHHHhhhcCchh----HHHHHHHHHHHHcC-----CChHHHHHHHHHHHhcC-CCh---HHHHH-HHHHH
Q 002911 218 GELLQMVVLELIRKVCRTNKGE----KGKYIKIIISLLNA-----PSTAVIYECAGTLVSLS-SAP---TAIRA-AANTY 283 (867)
Q Consensus 218 ~p~lQ~~iL~ll~~~~~~~p~~----~~~li~~L~~lL~s-----~s~aV~~eaa~tL~~Ls-~~p---~~lk~-aa~~l 283 (867)
+--+|..-.=.++.++|.|... ...+++.+.++|.. .+-.+++.|..+|-++. |-| ..+.+ +...+
T Consensus 328 d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaI 407 (604)
T KOG4500|consen 328 DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAI 407 (604)
T ss_pred chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHH
Confidence 3334555555677788876543 34566666666655 24568899999998873 211 11111 12222
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHHh----------hChhhHHHHHHhheecccCCCHH-------------HHHHHH-HH
Q 002911 284 SQLLLSQSDNNVKLIVLDRLNELRS----------SHRDIMVDLIMDVLRALNSPNLD-------------IRRKTL-DI 339 (867)
Q Consensus 284 i~ll~~~sD~Nvk~ivL~~L~~L~~----------~~p~~l~~~~~~il~~L~d~d~~-------------IR~kaL-el 339 (867)
+..+ +...|-+.+--|..+..+.. +||..+...+. --.++|.. ||.-+. ++
T Consensus 408 L~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~----Wsks~D~aGv~gESnRll~~lIkHs~~kdv 482 (604)
T KOG4500|consen 408 LLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD----WSKSPDFAGVAGESNRLLLGLIKHSKYKDV 482 (604)
T ss_pred HHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH----hhhCCccchhhhhhhHHHHHHHHhhHhhhh
Confidence 2222 33345565555555555543 46666554322 12334433 333333 45
Q ss_pred HhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH------HHHHHHHHHHcCCC--ccc
Q 002911 340 VLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS------TVVHLLMDFLGDSN--VAS 411 (867)
Q Consensus 340 L~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~------~~v~~Ll~lL~~~~--~~v 411 (867)
++.+..+.-|+..|..+.++ ..-++.+++-++..++.+|+..+. ...+.|.+..-... +.+
T Consensus 483 ~~tvpksg~ik~~Vsm~t~~-----------hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~~I 551 (604)
T KOG4500|consen 483 ILTVPKSGGIKEKVSMFTKN-----------HINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAATII 551 (604)
T ss_pred HhhccccccHHHHHHHHHHh-----------hHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhHHh
Confidence 55556666666666544332 345788899999999999987654 33344444333221 122
Q ss_pred HHHHHHHHHHHHHhCcc
Q 002911 412 AIDVIIFVREIIEMNPK 428 (867)
Q Consensus 412 ~~evi~~l~~ii~~~p~ 428 (867)
+..+-..++.+++..|+
T Consensus 552 ~~~s~~~~k~~~E~l~n 568 (604)
T KOG4500|consen 552 ASPSYEALKSYREDLPN 568 (604)
T ss_pred cCcHHHHHHHHHHhhHH
Confidence 22233455655554444
No 227
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=56.14 E-value=1.3e+02 Score=28.51 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002911 145 PYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 145 pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
++||++.+.++..|... ..|+--|++.+-+-+.+ .. ++......+..|..+..+
T Consensus 2 ~~i~~kl~~~l~~i~~~-~~P~~Wp~~l~~l~~~~-~~-~~~~~~~~L~iL~~l~eE 55 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKR-DWPQQWPDFLEDLLQLL-QS-SPQHLELVLRILRILPEE 55 (148)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTTTSTTHHHHHHHHH-HT-THHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-HChhhCchHHHHHHHHh-cc-chhHHHHHHHHHHHHHHH
Confidence 68999999999999984 45766666544333433 22 455555666665544433
No 228
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=55.35 E-value=8 Score=36.05 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=25.2
Q ss_pred ccCCCCcHHHHhhccccccceeEEeec
Q 002911 832 SPAVCTDAAFRTMWAEFEWENKVSLAL 858 (867)
Q Consensus 832 ~p~~~~~~~FR~mW~~feWENki~v~t 858 (867)
+|..++-+||-+||..|.=|=|++|++
T Consensus 1 RPl~isTeeFG~~W~s~~~e~k~~l~~ 27 (104)
T PF14807_consen 1 RPLQISTEEFGQLWLSFSNERKQNLPS 27 (104)
T ss_pred CCccccHHHHHHHHHcCCCeEEEeccc
Confidence 699999999999999999999999974
No 229
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=54.67 E-value=32 Score=35.40 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 126 ~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
--+++.++++++++|+++++-|.++++.++.++..
T Consensus 75 lPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 75 LPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999844
No 230
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=53.96 E-value=3.6e+02 Score=33.63 Aligned_cols=106 Identities=18% Similarity=0.097 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh-C----hhh---HHHHHHh--hee
Q 002911 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-H----RDI---MVDLIMD--VLR 323 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~-~----p~~---l~~~~~~--il~ 323 (867)
.+++..-+|...+-.+-.+|.+.+.++..++. +.+++.+|+..|+.|.+..+. + +.- +..-+-. -+.
T Consensus 17 vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~---~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~q 93 (980)
T KOG2021|consen 17 VDSATKQQAIEYLNQIKSSPNAWEICIELLIN---ETSNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQ 93 (980)
T ss_pred ccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh---hcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 56788888998888898888888877776654 337889999999999987652 2 211 1111111 123
Q ss_pred cccCC----CHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHHH
Q 002911 324 ALNSP----NLDIRRKTLDIVLE---LITPRNINEVVLMLKKEVVK 362 (867)
Q Consensus 324 ~L~d~----d~~IR~kaLelL~~---Lv~~~Nv~~IV~~L~kel~~ 362 (867)
++.+. +..|+.|+-+++.- .-=+.+|..+..-|+..+..
T Consensus 94 vl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~ 139 (980)
T KOG2021|consen 94 VLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQV 139 (980)
T ss_pred HhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 56666 78999998776654 33466677777766655544
No 231
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.78 E-value=7.9e+02 Score=34.09 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=67.5
Q ss_pred CCCchH--HHHHHHHHHhcCCCCHHHHHHHHHHhhcCC----chhhHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhhcc
Q 002911 89 RVLPEM--ILICQNLRNNLQHPNEYIRGVTLRFLCRLN----ETEIIEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKL 161 (867)
Q Consensus 89 ~l~~Em--iLv~NsL~KDL~~pNe~IRglALr~Ls~I~----~~el~e~L~~~V~~~L~d-~~pyVRK~A~lal~kI~~l 161 (867)
.+.||- -+..-.+.++|..|||..|+.+-.+++++. .+..+-.+.....+.|.+ ++|+-|---.+|++.+++
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhk- 945 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHK- 945 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-
Confidence 444553 355566778899999999999888888764 333333344444444544 666666666799999988
Q ss_pred CCCccccc-----chHHHHHHHHccCCCh-hHHHHHHHHHHhc
Q 002911 162 PQGEQLLV-----DAPEMIEKVLSTEQDP-SAKRNAFLMLFTC 198 (867)
Q Consensus 162 ~~~p~li~-----d~~~ll~~lL~~D~D~-~v~~~A~~~L~ei 198 (867)
.--...+ ....++..+ ..|+.+ .|..-++.++.-+
T Consensus 946 -yvgs~~s~qhl~t~v~illal-~~Ds~~p~VqtwSL~al~~i 986 (2067)
T KOG1822|consen 946 -YVGSIGSGQHLNTSVSILLAL-ATDSTSPVVQTWSLHALALI 986 (2067)
T ss_pred -hccCCCCchhcccHHHHHHHH-hhcCCCchhhhhHHHHHHHH
Confidence 2222322 223455553 355554 7888888877754
No 232
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=53.78 E-value=1.2e+02 Score=38.21 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=87.9
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChh-h----HHHHHHhheecccCCCHHHHHHHHHHHhccCC------CC
Q 002911 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD-I----MVDLIMDVLRALNSPNLDIRRKTLDIVLELIT------PR 347 (867)
Q Consensus 279 aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~-~----l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~------~~ 347 (867)
.+..+++.+. .-+..+|..-|..|.....+-|. + +.....-++++|+-+|..+|.-+++.+-.+.. ..
T Consensus 868 ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 868 IVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 4455566554 45566777777778777666553 1 23345567889999999999999998775543 34
Q ss_pred cHHHHHHHHHHHHHHhhcCCccCC-HHHHHHHHHHHHHhHccCCcc-----HHHHHHHHHHHHcCCCcccHHHHHH
Q 002911 348 NINEVVLMLKKEVVKTQSGELEKN-GEYRQMLIQAIHSCAIKFPEV-----ASTVVHLLMDFLGDSNVASAIDVII 417 (867)
Q Consensus 348 Nv~~IV~~L~kel~~~~~~~~d~d-~e~r~~lI~aI~~la~kf~~~-----a~~~v~~Ll~lL~~~~~~v~~evi~ 417 (867)
-+..+|..|. -+.+. .+.+ .-+|..+++.++.+.++-|.. -+.++..|...|.|....++.|++.
T Consensus 947 ~~~Tlvp~lL-sls~~----~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 947 HLSTLVPYLL-SLSSD----NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHhHHHHHHH-hcCCC----CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 5566666544 11111 1222 678899999999999877653 3577777777777777666666664
No 233
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.73 E-value=5.5e+02 Score=32.31 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhcCC----ChH----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhh
Q 002911 239 EKGKYIKIIISLLNAPST-AVIYECAGTLVSLSS----APT----AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (867)
Q Consensus 239 ~~~~li~~L~~lL~s~s~-aV~~eaa~tL~~Ls~----~p~----~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~ 309 (867)
.+..++..+.++|+..+. .|+.++++++-..-. ++. .+..+-..+..++-.-+.-..|..+|..|..+..+
T Consensus 523 ~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r 602 (978)
T KOG1993|consen 523 LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER 602 (978)
T ss_pred HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 456677888888888854 588888888765421 111 12222233333333334445677788888777766
Q ss_pred ChhhHHHHHHhhe
Q 002911 310 HRDIMVDLIMDVL 322 (867)
Q Consensus 310 ~p~~l~~~~~~il 322 (867)
-...++|+...|+
T Consensus 603 ~~e~I~P~~~~iv 615 (978)
T KOG1993|consen 603 VSEHIAPYASTIV 615 (978)
T ss_pred HHHhhhHHHHHHH
Confidence 5555555544443
No 234
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=52.63 E-value=41 Score=31.62 Aligned_cols=54 Identities=9% Similarity=0.242 Sum_probs=36.5
Q ss_pred EEEEEeecCcccccceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecc
Q 002911 743 LDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTE 797 (867)
Q Consensus 743 ldvl~vNqt~~tlqn~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste 797 (867)
..+-|.|.|++..+ ++|.+...-++++...+.+++++|++...+...|++...+
T Consensus 35 Y~lkl~Nkt~~~~~-~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 35 YTLKLTNKTNQPRT-YTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEE-SSS-EE-EEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEECCCCCEE-EEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 45568999998876 7777776669999777799999999999999999997766
No 235
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=52.52 E-value=20 Score=26.17 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhh
Q 002911 132 LIPSVLQNLQHRHPYIRRNAILAVMAIY 159 (867)
Q Consensus 132 L~~~V~~~L~d~~pyVRK~A~lal~kI~ 159 (867)
.++.+.+++.+.++.+++.|+.|+..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566777888889999999999998763
No 236
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.48 E-value=1.4e+02 Score=33.88 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhc----------CCCChHHHHHHHHHHHHhhccCCCcccccc----hHHHHHHHHccCCChhH-HHHHHH
Q 002911 129 IEPLIPSVLQNL----------QHRHPYIRRNAILAVMAIYKLPQGEQLLVD----APEMIEKVLSTEQDPSA-KRNAFL 193 (867)
Q Consensus 129 ~e~L~~~V~~~L----------~d~~pyVRK~A~lal~kI~~l~~~p~li~d----~~~ll~~lL~~D~D~~v-~~~A~~ 193 (867)
+..++|++..|+ .+.|-.+|..|+..+..|.+ .+....+. ....+.+.|.+...+.+ ...|+.
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~--~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~ 333 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR--KFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV 333 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH--HcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence 445777888777 34566999999999999988 55544444 33333344445555544 888888
Q ss_pred HHHhcchh
Q 002911 194 MLFTCDQD 201 (867)
Q Consensus 194 ~L~ei~~~ 201 (867)
.|..++++
T Consensus 334 GL~~lG~~ 341 (343)
T cd08050 334 GLSALGPE 341 (343)
T ss_pred HHHHhCcc
Confidence 88877653
No 237
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=52.46 E-value=3.9e+02 Score=30.21 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcc--------cccc-hHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002911 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--------LLVD-APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~--------li~d-~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
.+.+.+..+|..=.--.||.++.....+.+ ..+. .+.. .++++..++..=.+|.+..++=.+|.+|...
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr--~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLR--RQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT----BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHh--hccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh
Confidence 345556677777777888888877776666 2221 1112 2666666554444666667777788888766
Q ss_pred hHH-HHHHH------HhhhcCccchH-HHHHHHHHHHHhhhcCchh--------HHHHHHHHHHHHcCCChHHHHHHHHH
Q 002911 202 RAI-NYLLT------HVDRVSEWGEL-LQMVVLELIRKVCRTNKGE--------KGKYIKIIISLLNAPSTAVIYECAGT 265 (867)
Q Consensus 202 ~al-~~L~~------~l~~i~~~~p~-lQ~~iL~ll~~~~~~~p~~--------~~~li~~L~~lL~s~s~aV~~eaa~t 265 (867)
.++ +++.. .++-+.. ..| ...-....++.+-...+.. -.++......+|+|.|..+..++.+.
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 542 33221 1111110 011 1222233333322222221 23455666667777777777777777
Q ss_pred HHhc
Q 002911 266 LVSL 269 (867)
Q Consensus 266 L~~L 269 (867)
|..+
T Consensus 233 L~el 236 (335)
T PF08569_consen 233 LGEL 236 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 238
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=51.07 E-value=2.9e+02 Score=31.06 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=114.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhcCCChHH------HHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHhhChhhHH
Q 002911 243 YIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA------IRAAANTYSQLLLSQ-SDNNVKLIVLDRLNELRSSHRDIMV 315 (867)
Q Consensus 243 li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~p~~------lk~aa~~li~ll~~~-sD~Nvk~ivL~~L~~L~~~~p~~l~ 315 (867)
+.+.+-.++|+-++..+|=|++++-.+...++. -++++..++.++.+. .+..++|-.|-.+-.+. -+|...+
T Consensus 150 fleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aq 228 (432)
T COG5231 150 FLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQ 228 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHH
Confidence 445555666666677777788888777655432 124556666665332 34567776666555543 2343332
Q ss_pred ---H---HHHhheecccC-CCHHHHHHHHHHHhccCCCC------------cHHHHHHHHHHHHHHhhcCCccCCHHHHH
Q 002911 316 ---D---LIMDVLRALNS-PNLDIRRKTLDIVLELITPR------------NINEVVLMLKKEVVKTQSGELEKNGEYRQ 376 (867)
Q Consensus 316 ---~---~~~~il~~L~d-~d~~IR~kaLelL~~Lv~~~------------Nv~~IV~~L~kel~~~~~~~~d~d~e~r~ 376 (867)
. .+.+++.+... --.-|-|..+.|+.+++++. |+..-|+.|.+ .++. |.+.++
T Consensus 229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~e--rkys------DEel~~ 300 (432)
T COG5231 229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLE--RKYS------DEELVI 300 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHh--cCCC------hHHHHH
Confidence 1 22333333222 12334445555666666643 45555554442 2332 455665
Q ss_pred HHHHHHHHhHccCCc--cHHHHHHHHH-HHHcCCCcccHHHHHHH-HHHHHHhCcccHHHHHHHHHHHhcccchHhHHHH
Q 002911 377 MLIQAIHSCAIKFPE--VASTVVHLLM-DFLGDSNVASAIDVIIF-VREIIEMNPKLRVSIITRLLDNFYQIRAARVCTC 452 (867)
Q Consensus 377 ~lI~aI~~la~kf~~--~a~~~v~~Ll-~lL~~~~~~v~~evi~~-l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~ 452 (867)
.+-+-=..+...+-. ..+.|+.-|- ..|..+..+...+.|.. +..+...+ -.++++|...+..-...-..+.
T Consensus 301 di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdn----y~i~k~L~~~lq~n~~nt~i~v 376 (432)
T COG5231 301 DIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDN----YEIVKVLKKYLQSNNPNTWICV 376 (432)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhh----HHHHHHHHHHHhcCCCCceEee
Confidence 543333333333322 2245555444 35666777777777753 33333222 3578888888876333335677
Q ss_pred HhhHhhccCCCCCcHHHH
Q 002911 453 ALWIIGEYCQSLSEVENG 470 (867)
Q Consensus 453 alWiLGEY~~~~~~i~~~ 470 (867)
|+-=||.|....|++..+
T Consensus 377 Ac~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 377 ACSDIFQLVRASPEINAV 394 (432)
T ss_pred eHhhHHHHHHhCchHHHH
Confidence 777778877777765544
No 239
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=50.23 E-value=38 Score=33.32 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcC------------CchhhHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhc
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRL------------NETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I------------~~~el~e~L~~~V~~~L~-d~~pyVRK~A~lal~kI~~ 160 (867)
--++.+|+|-|+|+||.+.-.||..|-.+ .+.+++ ..+++.+. ..++-||++++..+..-..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl----~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM----DELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH----HHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999776543 233444 44444443 6789999999888777665
No 240
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=50.07 E-value=4.1e+02 Score=29.72 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=28.3
Q ss_pred hChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002911 309 SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 309 ~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
-.|..|...+..++-.+.+++.+|...+|+++..+++
T Consensus 158 lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 158 LPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp S-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 3455566666677778899999999999999986653
No 241
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=49.69 E-value=52 Score=33.86 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=58.1
Q ss_pred CchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHhhcC--CchhhH
Q 002911 52 PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL--NETEII 129 (867)
Q Consensus 52 s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~pNe~IRglALr~Ls~I--~~~el~ 129 (867)
..+++-...-+ ...++..+-++.-....+-+.....++.|-+--.+-.+++.|++.|+-|.+.+|++|..+ ..+.+-
T Consensus 37 ~~~Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 37 HHYLPIFFDGL-RETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhHHHHHHhhh-hccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444444433 456677776666665555333221222222233677899999999999999999999998 456677
Q ss_pred HHHHHHHHHhcC
Q 002911 130 EPLIPSVLQNLQ 141 (867)
Q Consensus 130 e~L~~~V~~~L~ 141 (867)
+.|+|..++.|-
T Consensus 116 ~aLvPyyrqLLp 127 (183)
T PF10274_consen 116 EALVPYYRQLLP 127 (183)
T ss_pred HHHHHHHHHHHH
Confidence 778887777653
No 242
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.50 E-value=1.1e+02 Score=29.79 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHhheecccC-CC-HH--HHHHHHHHHhc
Q 002911 277 RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNS-PN-LD--IRRKTLDIVLE 342 (867)
Q Consensus 277 k~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~------~~~~~il~~L~d-~d-~~--IR~kaLelL~~ 342 (867)
+.++..+.+.| .++++++.+.+|..|..+..+-..-|. ++...+.+++.+ .. .. ||.++++++..
T Consensus 41 kea~~~l~krl-~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 41 KEAARALRKRL-KHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 44555555554 346677777777666666654322221 123333333332 22 22 89998888874
No 243
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=49.25 E-value=1.2e+02 Score=34.79 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=26.8
Q ss_pred ccchHHHHHHHHHHHHhhhc-CchhHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002911 216 EWGELLQMVVLELIRKVCRT-NKGEKGKYIKIIISLLNAPSTAVIYECAGT 265 (867)
Q Consensus 216 ~~~p~lQ~~iL~ll~~~~~~-~p~~~~~li~~L~~lL~s~s~aV~~eaa~t 265 (867)
...||++..+++++..+-.. .++....+++.+...|++++..|.--||.+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 34566666666666665433 233445566666666666666655555544
No 244
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=48.81 E-value=1e+02 Score=30.85 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=46.2
Q ss_pred EEEEeeeecceeEEEEEEeecC-cccccceEEEEEecCC-eEEeecCCccccCCCCeEEEEEEEEE
Q 002911 730 AEAYVTVHHYDIVLDVTVINRT-KETLQNLCLELATMGD-LKLVERPQNYTLAPESSKQIKANIKV 793 (867)
Q Consensus 730 ~Ea~v~v~~~di~ldvl~vNqt-~~tlqn~~~el~t~g~-lk~v~~p~~~~l~p~~~~~~~~~ikv 793 (867)
+-+.-++-.=-|||..-+.|.= +..|.||+|.+.+..+ ++.+...+--+|.|++..++.+.++-
T Consensus 39 V~~vKHiF~~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~~~~~~~ipi~~L~~~~~~~~yV~l~~ 104 (151)
T PF08752_consen 39 VSCVKHIFAEHIVLQFNVTNTLNDQVLENVSVVLEPSEEEFEEVFIIPIPSLPYNEPGSCYVVLKR 104 (151)
T ss_dssp EEEEEEE-SSEEEEEEEEEE--TTEEEEEEEEEEEESSS--EEEEEE-EEEE-CT--EEEEEEEE-
T ss_pred EEEEEEEecccEEEEEEEeeccCceeeeeEEEEEecCCceEEEEEEEEhhhCCCCCCeeEEEEEEe
Confidence 4455555566799999999987 5679999999998886 89888888888999999999999988
No 245
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=48.63 E-value=1.2e+02 Score=32.81 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHc---CCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHh
Q 002911 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLG---DSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAAR 448 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~---~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~ 448 (867)
.-....+++++..++.|--.-.-.++.-..+.|. ...+.....++..+-.+=.++|+.---++.+|++. .|= .
T Consensus 50 ~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~--~ii--~ 125 (253)
T PF09090_consen 50 KFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELEAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNY--GII--S 125 (253)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--TSS---
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhc--CCC--C
Confidence 4466778899999887732222233333333222 22333444556677777778888777777777663 222 3
Q ss_pred HHHHHhhHhhccC-CCCCcHHHHHHHHHHhhCC
Q 002911 449 VCTCALWIIGEYC-QSLSEVENGIATIKQCLGE 480 (867)
Q Consensus 449 v~~~alWiLGEY~-~~~~~i~~~~~~i~~~l~~ 480 (867)
-...+-|+++++. ...=.-..+|+.++..+..
T Consensus 126 ~~~Vv~w~f~~~~~~~~~~~~~~wE~l~~tl~k 158 (253)
T PF09090_consen 126 PSAVVNWVFSPENGNQELTRSYVWEILNRTLRK 158 (253)
T ss_dssp HHHHHHHHTSGGG-TTTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccccccchhhchHHHHHHHHHHH
Confidence 3556789999987 3333346889999888864
No 246
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=48.34 E-value=31 Score=33.09 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=33.9
Q ss_pred HHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCc
Q 002911 303 LNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRN 348 (867)
Q Consensus 303 L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~N 348 (867)
|.++....+.-+.+....+++.|++.++.||.|+|.++-.+|...+
T Consensus 25 ia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 25 IAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 4444445666666655566778899999999999999998877655
No 247
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=47.55 E-value=72 Score=30.80 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC---c----hhhHH-HHHHHHHHhcCC---CChHHHHHHHHHHHHhhc
Q 002911 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLN---E----TEIIE-PLIPSVLQNLQH---RHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~---~----~el~e-~L~~~V~~~L~d---~~pyVRK~A~lal~kI~~ 160 (867)
.-.++.+|+|-|+|+||.++-.||..|-.+. . .++.. ..+..+.+.+.. .++-||++++..+.....
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999998876542 1 22222 233345555543 588899998888777666
No 248
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=46.48 E-value=6.9e+02 Score=31.32 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCChHHHH-------------HHHHHHHHhhccCCCcccccchHHHHHHHH-------ccCCChhHHHHHHHHHHhcch
Q 002911 141 QHRHPYIRR-------------NAILAVMAIYKLPQGEQLLVDAPEMIEKVL-------STEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 141 ~d~~pyVRK-------------~A~lal~kI~~l~~~p~li~d~~~ll~~lL-------~~D~D~~v~~~A~~~L~ei~~ 200 (867)
+|+..|+|| +|+.++..+-.. +.........+.+...| .+..++.-...|+.++..+..
T Consensus 367 nDp~eyirry~df~d~g~spdlaal~fl~~~~sK-rke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 367 NDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSK-RKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred cCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcc-cchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Q ss_pred --------hhHHHHHH--HHhhhcCccchHHHHHHHHHHHHhhhc--CchhHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 002911 201 --------DRAINYLL--THVDRVSEWGELLQMVVLELIRKVCRT--NKGEKGKYIKIIISLLNAPSTAVIYECAGTLVS 268 (867)
Q Consensus 201 --------~~al~~L~--~~l~~i~~~~p~lQ~~iL~ll~~~~~~--~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~ 268 (867)
..-..++. +++....+.--++|....+++.++... ++.......+...++++++.-.|+.|||.++-.
T Consensus 446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~ 525 (970)
T COG5656 446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQF 525 (970)
T ss_pred HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q ss_pred cCCC---hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCC
Q 002911 269 LSSA---PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 269 Ls~~---p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
+-.+ ...+++-+...++.+++-+.----=+.=..+..+...+++-++++..++.. .+++.-|.+...+..
T Consensus 526 fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~-------~Lv~qFlkiaq~l~e 598 (970)
T COG5656 526 FIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG-------SLVRQFLKIAQSLLE 598 (970)
T ss_pred HHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH-------HHHHHHHHHHHHHHc
Q ss_pred CC-----------------------------cHHHHHHHHHHHHHHhhc----CCccCCHHHHHHHHHHHHHhHccCCcc
Q 002911 346 PR-----------------------------NINEVVLMLKKEVVKTQS----GELEKNGEYRQMLIQAIHSCAIKFPEV 392 (867)
Q Consensus 346 ~~-----------------------------Nv~~IV~~L~kel~~~~~----~~~d~d~e~r~~lI~aI~~la~kf~~~ 392 (867)
.. |..+|++.+..-+....+ ++..+-..=.-+++....-...-..+.
T Consensus 599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi 678 (970)
T COG5656 599 NSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI 678 (970)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh
Q ss_pred HHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHH
Q 002911 393 ASTVVHLLMDFLGDSNV-ASAIDVIIFVREII 423 (867)
Q Consensus 393 a~~~v~~Ll~lL~~~~~-~v~~evi~~l~~ii 423 (867)
.--+...+.+++.+.+. .-..|+..++.+++
T Consensus 679 mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfi 710 (970)
T COG5656 679 MWGIFELLLNLLIDEITAVYSEEVADALDNFI 710 (970)
T ss_pred hhHHHHHHHhcccccchhhhHHHHHHHHHHHH
No 249
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=46.39 E-value=2.1e+02 Score=29.48 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
+|+++..++..|.+....+-..||-.|..|+.++..
T Consensus 1 ~~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~ 36 (193)
T PF12612_consen 1 SPELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLH 36 (193)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367788888888888888999999999999999986
No 250
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.72 E-value=6.6e+02 Score=30.86 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=94.4
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchH--HHHHHHHccCCChhHHHHHHH
Q 002911 116 TLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP--EMIEKVLSTEQDPSAKRNAFL 193 (867)
Q Consensus 116 ALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~--~ll~~lL~~D~D~~v~~~A~~ 193 (867)
|.-+-+=+-+|+=--..+..+.+.+.+.+|-+||-|.+++..+|+ +++|.+. .+.+ .+.++.+......
T Consensus 195 A~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFK-----DIiP~YkIR~lte----~Ek~~k~sKev~k 265 (704)
T KOG2153|consen 195 ASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFK-----DIIPGYKIRPLTE----KEKRTKLSKEVLK 265 (704)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH-----hhcccceecccHH----HHhcccccHHHHH
Confidence 333434455666666678888899999999999999999999998 3555431 1111 2333333322221
Q ss_pred HHHhcchh---hHHHHHHH---HhhhcCccchHHHH----HHHHHHHHhhhcCc--hhHHHHHHHHHHHHcCCChHHHHH
Q 002911 194 MLFTCDQD---RAINYLLT---HVDRVSEWGELLQM----VVLELIRKVCRTNK--GEKGKYIKIIISLLNAPSTAVIYE 261 (867)
Q Consensus 194 ~L~ei~~~---~al~~L~~---~l~~i~~~~p~lQ~----~iL~ll~~~~~~~p--~~~~~li~~L~~lL~s~s~aV~~e 261 (867)
. .+.... +-..||.. ...+.+...|. |+ ..++.+..+....| ..+.+++.++..++......|+..
T Consensus 266 l-r~yE~~Ll~~Yk~ylQkLe~~vK~~~~~~~~-~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~ 343 (704)
T KOG2153|consen 266 L-REYEQALLKQYKSYLQKLEQFVKDLSLRTPQ-QVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSG 343 (704)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhhhhcchH-HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHH
Confidence 1 111111 11233333 33333223332 44 33444444433322 456778888888888877777777
Q ss_pred HHHHHHhcCCChH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 002911 262 CAGTLVSLSSAPT--AIRAAANTYSQLLLSQSDNNVKLIVLDRLNE 305 (867)
Q Consensus 262 aa~tL~~Ls~~p~--~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~ 305 (867)
|+.++=.+-.++. .....+...+..+++....++.--++..+..
T Consensus 344 ~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~ls 389 (704)
T KOG2153|consen 344 CIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLS 389 (704)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhHHHHHHh
Confidence 7777766654432 1122233334444444444444444444433
No 251
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=45.65 E-value=6.8e+02 Score=30.98 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=149.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhh--cCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 99 QNLRNNLQHPNEYIRGVTLRFLC--RLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 99 NsL~KDL~~pNe~IRglALr~Ls--~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
..+.|-|-+..+|+.+-||-.++ +.+..+=++|...-+...+.+.+.-+|-.|++.++-.|. -.. .++...++.
T Consensus 418 ~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglaya--Gsq--~e~V~~lL~ 493 (878)
T KOG2005|consen 418 EQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYA--GSQ--REEVLELLS 493 (878)
T ss_pred HHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhc--CCc--hHHHHHHHh
Confidence 67888898888999988887654 445666677877788889999999999999999998887 221 233333555
Q ss_pred HHHccCCChhHHHHHHHH--HHh-----cchhhHHHHHHHHhhh--cCccchHHHHHHHHHHHHh-hhcCchh-------
Q 002911 177 KVLSTEQDPSAKRNAFLM--LFT-----CDQDRAINYLLTHVDR--VSEWGELLQMVVLELIRKV-CRTNKGE------- 239 (867)
Q Consensus 177 ~lL~~D~D~~v~~~A~~~--L~e-----i~~~~al~~L~~~l~~--i~~~~p~lQ~~iL~ll~~~-~~~~p~~------- 239 (867)
-.+ .|.++..-..||.+ |.. |+.+-+-..|..++++ ...-++|..-..|-+--.+ .+++..+
T Consensus 494 Pi~-~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~ 572 (878)
T KOG2005|consen 494 PIM-FDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIK 572 (878)
T ss_pred HHh-cCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 544 67777644444443 333 4555454455555543 1234556544444432222 2221110
Q ss_pred -----HHHHHHHHHHHHcCC--ChHHHHHHHH-----------------------HHHhcCCChHHHHHHHHHHHHHHcc
Q 002911 240 -----KGKYIKIIISLLNAP--STAVIYECAG-----------------------TLVSLSSAPTAIRAAANTYSQLLLS 289 (867)
Q Consensus 240 -----~~~li~~L~~lL~s~--s~aV~~eaa~-----------------------tL~~Ls~~p~~lk~aa~~li~ll~~ 289 (867)
-.++.+.+...-... ......+... +++.++.. .=..++...++.++.
T Consensus 573 ~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgee--ig~eM~lR~f~h~l~ 650 (878)
T KOG2005|consen 573 AIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEE--IGSEMVLRHFGHLLH 650 (878)
T ss_pred HhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhh--hhhHHHHHHHHHHHH
Confidence 011222221111110 0000010001 11111110 001122333444455
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCcc
Q 002911 290 QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELE 369 (867)
Q Consensus 290 ~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d 369 (867)
-..+++|-.+=-.+.-+.-++|.+ +....+-+..+|.|.++..-++=-+.-+..-.|=..+.+.|. ++..|... |
T Consensus 651 yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLr-qlaSYyyK--d 725 (878)
T KOG2005|consen 651 YGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLR-QLASYYYK--D 725 (878)
T ss_pred cCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHH-HHHHHHhc--c
Confidence 677888887777777777788864 111123345678888888888766666665555555555444 44444221 3
Q ss_pred CCHHHHHHHHHHHHHhH
Q 002911 370 KNGEYRQMLIQAIHSCA 386 (867)
Q Consensus 370 ~d~e~r~~lI~aI~~la 386 (867)
.+.-|-..+.+.+-.++
T Consensus 726 ~~~Lf~vriAQGL~hlG 742 (878)
T KOG2005|consen 726 SKALFVVRIAQGLVHLG 742 (878)
T ss_pred chhHHHHHHHHHHHHhc
Confidence 44455555666665554
No 252
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=45.27 E-value=7.1e+02 Score=31.10 Aligned_cols=66 Identities=8% Similarity=0.040 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHH---hCcccHHHHHHHHHHHhcccch-----HhHHHHHhhHhhcc
Q 002911 395 TVVHLLMDFLGDSNVASAIDVIIFVREIIE---MNPKLRVSIITRLLDNFYQIRA-----ARVCTCALWIIGEY 460 (867)
Q Consensus 395 ~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~---~~p~lr~~il~~L~~~L~~i~~-----~~v~~~alWiLGEY 460 (867)
..++.|+++|...++.++..+...++++-. +.+.+-.+++..|++.|++-.. .+..++++..+-|.
T Consensus 566 kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ni 639 (717)
T KOG1048|consen 566 KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNI 639 (717)
T ss_pred cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHH
Confidence 446789999999999999999999999863 3445556789999999976433 56777777766655
No 253
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=44.33 E-value=4.6e+02 Score=28.61 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcCC---CCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHH
Q 002911 74 LLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQH---PNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRN 150 (867)
Q Consensus 74 ~Ylyl~~~~~~d~dg~l~~EmiLv~NsL~KDL~~---pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~ 150 (867)
--+||..++-++.+-+ +|.+.+.+.+.+=+.. .++.++..-+.......+..-.+-+.+-|.+.+.++..+-+--
T Consensus 6 pQlFW~~vAcL~S~~E--~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl 83 (262)
T PF14225_consen 6 PQLFWTAVACLESIHE--HEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTL 83 (262)
T ss_pred hHHHHHHHHhhcCCcH--HHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHH
Confidence 3578998888887654 6777777777765543 3466666666666655443456778889999999988887654
Q ss_pred HHHHHHHhhcc
Q 002911 151 AILAVMAIYKL 161 (867)
Q Consensus 151 A~lal~kI~~l 161 (867)
.+ +.++..+
T Consensus 84 ~l--L~~L~~~ 92 (262)
T PF14225_consen 84 RL--LSRLTPL 92 (262)
T ss_pred HH--HHHHhcC
Confidence 44 4444443
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=42.62 E-value=3.8e+02 Score=27.61 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.2
Q ss_pred cccCCCHHHHHHHHHHHhccCCC
Q 002911 324 ALNSPNLDIRRKTLDIVLELITP 346 (867)
Q Consensus 324 ~L~d~d~~IR~kaLelL~~Lv~~ 346 (867)
.+.|+++-+|..|+.++..|...
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHc
Confidence 36799999999999999977654
No 255
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=41.97 E-value=7.8e+02 Score=30.64 Aligned_cols=136 Identities=22% Similarity=0.331 Sum_probs=86.4
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCCCCCCchHH
Q 002911 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (867)
Q Consensus 16 ~~~~~eIr~~L~s~~~~~K~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~d~dg~l~~Emi 95 (867)
+.++.++-..|+|++...-- -+++++.-......=+|+.-..+.|-+.+.+...-.++. .+ .+|..+ +
T Consensus 3 ~~~~~~l~~~l~s~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~----~~--~~P~~K---~-- 70 (668)
T PF04388_consen 3 QASITELLSLLESNDLSVLE-EIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILV----GV--QEPHDK---H-- 70 (668)
T ss_pred cccHHHHHHHhcCCchhhHH-HHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHH----hc--CCccHH---H--
Confidence 45788999999998765443 334444444444444688888888877777766544443 12 333211 1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCc------hhhHH-HHHHHHHHhc-CCCChHHHHHHHHHHHHhhccCCCccc
Q 002911 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNE------TEIIE-PLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQL 167 (867)
Q Consensus 96 Lv~NsL~KDL~~pNe~IRglALr~Ls~I~~------~el~e-~L~~~V~~~L-~d~~pyVRK~A~lal~kI~~l~~~p~l 167 (867)
.++.|..-+..| --|-.||..||.+.. ..+++ +|++.|.+|| .|.++.|=-.|+.++..+.- .-|..
T Consensus 71 -~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP--~ip~~ 145 (668)
T PF04388_consen 71 -LFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP--HIPSS 145 (668)
T ss_pred -HHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc--cccch
Confidence 224444444544 567788888988742 33444 6888888887 45788888888888888755 55543
Q ss_pred c
Q 002911 168 L 168 (867)
Q Consensus 168 i 168 (867)
+
T Consensus 146 l 146 (668)
T PF04388_consen 146 L 146 (668)
T ss_pred h
Confidence 3
No 256
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=41.97 E-value=3.2e+02 Score=28.51 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=15.2
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHh
Q 002911 134 PSVLQNLQHRHPYIRRNAILAVMAI 158 (867)
Q Consensus 134 ~~V~~~L~d~~pyVRK~A~lal~kI 158 (867)
+.+.+...+.|.++||.|+.+..+.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~ 142 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKY 142 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3445555666777777777665553
No 257
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.57 E-value=1.1e+03 Score=32.22 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc---HHHHHHHHHHHhcccchHhHHH
Q 002911 394 STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL---RVSIITRLLDNFYQIRAARVCT 451 (867)
Q Consensus 394 ~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l---r~~il~~L~~~L~~i~~~~v~~ 451 (867)
..++..|+..++.+++.-+..++.++.++.+.+|+. ....+..+++.+++...+++++
T Consensus 472 qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR~ 532 (1426)
T PF14631_consen 472 QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDYLDNLSLQQIRK 532 (1426)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGGGGG--HHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 477888888887777666677788889998887754 2345667777777766555444
No 258
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=40.32 E-value=50 Score=32.17 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcCC---chhhHH-----HHHHHHHHhcCCC--ChH--HHHHHHHHHHHhhc
Q 002911 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLN---ETEIIE-----PLIPSVLQNLQHR--HPY--IRRNAILAVMAIYK 160 (867)
Q Consensus 94 miLv~NsL~KDL~~pNe~IRglALr~Ls~I~---~~el~e-----~L~~~V~~~L~d~--~py--VRK~A~lal~kI~~ 160 (867)
.--+..+|+|-|+|+||.+.-.||..|-.+. .+.+.. .++..+.+++.++ ++. ||+++...+.....
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3568899999999999999999988776542 122211 1455566655432 333 89988877666555
No 259
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.13 E-value=97 Score=33.50 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=51.7
Q ss_pred HHHHhcCCC--ChHHHHHHHHHHHHhhccCCCcccccch----HHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHH
Q 002911 135 SVLQNLQHR--HPYIRRNAILAVMAIYKLPQGEQLLVDA----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLL 208 (867)
Q Consensus 135 ~V~~~L~d~--~pyVRK~A~lal~kI~~l~~~p~li~d~----~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~~al~~L~ 208 (867)
.+++.++++ ..|||-.|+-|+..+.. .+|...+.. .+++..++ ..++..+-..-+..++.+.+...++.+.
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~--~~~~~Re~vi~~f~~ll~~~l-~~~~~~~~~~Lv~~~~dL~~~EL~~~I~ 191 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVH--EGPISREEVIQYFRELLNYFL-ERNPSFLWGSLVADICDLYPEELLPEIR 191 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHhcCHHHhHHHHH
Confidence 345566665 78999999999999988 777554443 45555545 3334445666667788888887777777
Q ss_pred HHhhh
Q 002911 209 THVDR 213 (867)
Q Consensus 209 ~~l~~ 213 (867)
+.+..
T Consensus 192 ~~f~~ 196 (249)
T PF06685_consen 192 KAFED 196 (249)
T ss_pred HHHHc
Confidence 66653
No 260
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.99 E-value=2.3e+02 Score=36.73 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=84.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHH--HHHHhheecccCCCHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHHH
Q 002911 289 SQSDNNVKLIVLDRLNELRSSHRDIMV--DLIMDVLRALNSPNLDIRRKTLDIVLELITPR----NINEVVLMLKKEVVK 362 (867)
Q Consensus 289 ~~sD~Nvk~ivL~~L~~L~~~~p~~l~--~~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~----Nv~~IV~~L~kel~~ 362 (867)
.+-++++|.+.+..|..-...+|..|- .|+..+==.|+|...+||++.+.+|-.|...+ -++..+..++.-+..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 356799999999999999999999873 36666666799999999999999999887652 223333333332222
Q ss_pred hhcCCccCCHHHHHHHHHHHHHhHccCCcc-HHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Q 002911 363 TQSGELEKNGEYRQMLIQAIHSCAIKFPEV-ASTVVHLLMDFLGDSNVASAIDVIIFVREII 423 (867)
Q Consensus 363 ~~~~~~d~d~e~r~~lI~aI~~la~kf~~~-a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii 423 (867)
.++ .|.+..+|..-+... +....+.. .+..+..+.+++-+.+..++.++..++..-+
T Consensus 377 Mad--rd~~~~Vrav~L~~~--~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 377 MAD--RDRNVSVRAVGLVLC--LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHh--hhcchhHHHHHHHHH--HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 221 122222332222111 11223332 3566777888888888888888888776554
No 261
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.88 E-value=2.1e+02 Score=27.65 Aligned_cols=65 Identities=12% Similarity=0.299 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH-----H-HHHHhheecccCC-C-HHHHHHHHHHHhc
Q 002911 277 RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM-----V-DLIMDVLRALNSP-N-LDIRRKTLDIVLE 342 (867)
Q Consensus 277 k~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l-----~-~~~~~il~~L~d~-d-~~IR~kaLelL~~ 342 (867)
+.++..+.+.| +++++++.+.+|..|..+..+-..-| + .+...+.++++++ + +.||.+.++++..
T Consensus 36 k~a~r~l~krl-~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 36 KDAVRLLKKRL-NNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 34444444554 35666777777766666655311111 1 1222233333332 2 2388888888775
No 262
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=39.65 E-value=6e+02 Score=28.68 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=43.8
Q ss_pred HHHHHHHHHccCCCHH-HHHHHHHHHHHHHhhChhh---HHH--HHHhheecccCCCHHHHHHHHHHHhccCC
Q 002911 279 AANTYSQLLLSQSDNN-VKLIVLDRLNELRSSHRDI---MVD--LIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (867)
Q Consensus 279 aa~~li~ll~~~sD~N-vk~ivL~~L~~L~~~~p~~---l~~--~~~~il~~L~d~d~~IR~kaLelL~~Lv~ 345 (867)
+...+.+++- .+.+| .-.+++.-+..+.+..|+. +.. -...|+..++++|+.||-.||..+..+.+
T Consensus 357 i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 4455566553 44444 5667777777777777763 332 24457777899999999999988775543
No 263
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=39.52 E-value=5.8e+02 Score=28.43 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhCh-----hhHHHHHHhheecccCCCHHHHHHHHH---HHhccCC
Q 002911 293 NNVKLIVLDRLNELRSSHR-----DIMVDLIMDVLRALNSPNLDIRRKTLD---IVLELIT 345 (867)
Q Consensus 293 ~Nvk~ivL~~L~~L~~~~p-----~~l~~~~~~il~~L~d~d~~IR~kaLe---lL~~Lv~ 345 (867)
+.+.-.+|..-.-|...-| ..++.++..+..+|.++|..||.-|=+ +++.+..
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 4577778887777765433 244566777888899999999987544 4444443
No 264
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.40 E-value=9.1e+02 Score=30.66 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCC-ChhHHHHHHHHHHh
Q 002911 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQ-DPSAKRNAFLMLFT 197 (867)
Q Consensus 131 ~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~-D~~v~~~A~~~L~e 197 (867)
.+...+.+.+ +++|.|||.|=-++-..-. + +.++-.+-+++.+++ |+..+.+|...+-.
T Consensus 6 ~l~~~l~qTl-~pdps~rk~aEr~L~~~e~--q-----~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN 65 (960)
T KOG1992|consen 6 TLANYLLQTL-SPDPSVRKPAERALRSLEG--Q-----QNYPLLLLNLVANGQQDPQIRVAAAVYFKN 65 (960)
T ss_pred HHHHHHHhcC-CCCCccCchHHHHHHHhcc--C-----CCchHHHHHHHhccCcChhHHHHHHHHHHH
Confidence 3333444433 5678999998888876644 2 223333334444444 78888877776653
No 265
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.16 E-value=37 Score=25.40 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 002911 243 YIKIIISLLNAPSTAVIYECAGTLVSLS 270 (867)
Q Consensus 243 li~~L~~lL~s~s~aV~~eaa~tL~~Ls 270 (867)
.++.|.++|.+.++.|+.+|+.+|.+++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5678889999999999999999988764
No 266
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.65 E-value=3.3e+02 Score=32.68 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhHHHHHHH
Q 002911 114 GVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFL 193 (867)
Q Consensus 114 glALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v~~~A~~ 193 (867)
|.||-+||.=...+|. ...+-..+-..+|.+||.--+|++-++- .+|+. ...+.++++. .|.|..|..|++.
T Consensus 627 g~AliamGedig~eMv---lRhf~h~mhyg~~hiR~~~PLa~gils~--SnPQm--~vfDtL~r~s-hd~dl~v~~ntIf 698 (881)
T COG5110 627 GCALIAMGEDIGSEMV---LRHFSHSMHYGSSHIRSVLPLAYGILSP--SNPQM--NVFDTLERSS-HDGDLNVIINTIF 698 (881)
T ss_pred hhHHhhhcchhhHHHH---HHHhhhHhhcCcHHHHHHHHHHHhcccC--CCcch--HHHHHHHHhc-cccchhHHHHHHH
Q ss_pred HHHhcchhhHHHHHHHHhhhc-----CccchHHHHHHHHHHHHhhhc--------------CchhHHHHHHHHHHHHcCC
Q 002911 194 MLFTCDQDRAINYLLTHVDRV-----SEWGELLQMVVLELIRKVCRT--------------NKGEKGKYIKIIISLLNAP 254 (867)
Q Consensus 194 ~L~ei~~~~al~~L~~~l~~i-----~~~~p~lQ~~iL~ll~~~~~~--------------~p~~~~~li~~L~~lL~s~ 254 (867)
++.-|.....-..|.++++|+ .+.+..+-++|-+=+-.+... .|..-.-++..+.-+|.++
T Consensus 699 amGLiGAGT~NaRlaqlLrQlaSYY~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~agl~ttv~~lld~~ 778 (881)
T COG5110 699 AMGLIGAGTLNARLAQLLRQLASYYYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAGLFTTVFMLLDSS 778 (881)
T ss_pred HhhccccCcchHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHHHHHHHHHHHccc
Q ss_pred C
Q 002911 255 S 255 (867)
Q Consensus 255 s 255 (867)
.
T Consensus 779 ~ 779 (881)
T COG5110 779 I 779 (881)
T ss_pred c
No 267
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=38.61 E-value=69 Score=31.76 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=45.2
Q ss_pred eEEEEEEeecCcccccceEEEEEe-cCCeEEeecCCccccCCCCeEEEEEEEEE
Q 002911 741 IVLDVTVINRTKETLQNLCLELAT-MGDLKLVERPQNYTLAPESSKQIKANIKV 793 (867)
Q Consensus 741 i~ldvl~vNqt~~tlqn~~~el~t-~g~lk~v~~p~~~~l~p~~~~~~~~~ikv 793 (867)
+.+++.+.|.+++.+.||+|.=-. .+.+++-|=|+--.|.|++..+...-|-.
T Consensus 87 vsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 87 VSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred EEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 468999999999999999998777 66899999999999999998776554433
No 268
>PRK14341 lipoate-protein ligase B; Provisional
Probab=38.43 E-value=17 Score=38.36 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=46.6
Q ss_pred eEEeecCCccccCCCCeEE-E--EEEEEEEecccceEEEEEEEecCCccccc-eEEccccccccccccc
Q 002911 768 LKLVERPQNYTLAPESSKQ-I--KANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYIS 832 (867)
Q Consensus 768 lk~v~~p~~~~l~p~~~~~-~--~~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~ 832 (867)
|=++|.|+.+|+|-++... + ...|-|-.|+-| |-|+|-+|+.---+ ++.|.....|+-+|++
T Consensus 38 llllEH~pVyT~G~~~~~~~ll~~~~i~v~~t~RG---G~iTyHGPGQlV~YpIl~L~~~~~~v~~yv~ 103 (213)
T PRK14341 38 VWLLEHPPLYTAGTSAKAEDLLDPDRFPVYETGRG---GQYTYHGPGQRVAYVMLDLKRRRRDVRAFVA 103 (213)
T ss_pred EEEECCCCCeeCCCCCChhhccCCCCCCEEEeCCC---cceeEECCCeEEEEEEEEccccCCCHHHHHH
Confidence 5689999999999887532 1 114567888888 99999998644333 6777888888888875
No 269
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=38.18 E-value=1e+03 Score=31.31 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=47.3
Q ss_pred cCCCCCCCchH------HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCh--HHHHHHHHHH
Q 002911 84 TDAKGRVLPEM------ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHP--YIRRNAILAV 155 (867)
Q Consensus 84 ~d~dg~l~~Em------iLv~NsL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~p--yVRK~A~lal 155 (867)
.|||+++.-|+ .+-.+.||+ +.|-.-+--||+.|.......-. ..+.+.|++.+- -||-.|+.||
T Consensus 628 iDpd~e~i~~i~i~QPd~Mw~~QLr~---drDVvAQ~EAI~~le~~p~~~s~----~~L~rtl~der~FyrIR~~Aa~aL 700 (1180)
T KOG1932|consen 628 IDPDMEWIREIHIEQPDFMWVYQLRQ---DRDVVAQMEAIESLEALPSTASR----SALTRTLEDERYFYRIRIAAAFAL 700 (1180)
T ss_pred eCcchhhhhhhhccCchHHHHHHHHh---cccHHHHHHHHHHHHcCCcchhH----HHHHHHHhhcchhhHHHHHHHHHH
Confidence 45555443333 344555554 45666677899999999887765 445566766654 5899999999
Q ss_pred HHhhc
Q 002911 156 MAIYK 160 (867)
Q Consensus 156 ~kI~~ 160 (867)
.|.-.
T Consensus 701 ak~a~ 705 (1180)
T KOG1932|consen 701 AKTAN 705 (1180)
T ss_pred HHhhc
Confidence 99866
No 270
>PRK14344 lipoate-protein ligase B; Provisional
Probab=37.60 E-value=22 Score=37.77 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=47.5
Q ss_pred CeEEeecCCccccCCCCe-EEEE-----EEEEEEecccceEEEEEEEecCCccccc-eEEcccccccccccccc
Q 002911 767 DLKLVERPQNYTLAPESS-KQIK-----ANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYISP 833 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~-~~~~-----~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~p 833 (867)
-|=++|.|+.+|+|-++. .++. ..+.|-.|+-| |-|+|-+|+.---+ ++.|+.-..|+-+|+.-
T Consensus 52 ~llllEH~pVyT~G~~~~~~~l~~~~~~~~~~v~~~~RG---G~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~ 122 (223)
T PRK14344 52 AVWLLEHQLCYTLGRGASEDNLLFSLNNPPADVFRIDRG---GEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQ 122 (223)
T ss_pred EEEEECCCCCeeCCCCCChhhccCccccCCCcEEEcCCC---ceeeEECCCcEEEEEEEEccccCCCHHHHHHH
Confidence 356899999999998766 3333 24788899999 99999998644333 67777778888887653
No 271
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.28 E-value=1.2e+02 Score=28.21 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHhcc
Q 002911 327 SPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 327 d~d~~IR~kaLelL~~L 343 (867)
+.+..||.++++++...
T Consensus 97 ~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 97 DVSTNVREKAIELVQLW 113 (115)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 45788999999887654
No 272
>PRK14349 lipoate-protein ligase B; Provisional
Probab=37.28 E-value=19 Score=38.03 Aligned_cols=64 Identities=19% Similarity=0.340 Sum_probs=47.8
Q ss_pred CeEEeecCCccccCCCCeEE-E--EEEEEEEecccceEEEEEEEecCCccccc-eEEcccccccccccccc
Q 002911 767 DLKLVERPQNYTLAPESSKQ-I--KANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYISP 833 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~~~-~--~~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~p 833 (867)
-|=++|.|+.+|++-++... + ...+-|-.|+-| |.|+|-+|+.---+ ++.|+....|+-+|++-
T Consensus 32 ~llllEH~pVyT~G~~~~~~~ll~~~~i~vv~t~RG---G~iTyHGPGQLV~YpIldL~~~~~~vr~yv~~ 99 (220)
T PRK14349 32 EIWLCEHAPVYTLGQAGRPEHLLNPGLIPVVHCDRG---GQVTYHGPGQVLAYTLFDLRRAGLYVREYVDM 99 (220)
T ss_pred EEEEEcCCCCeeCCCCCChhhccCCCCCcEEEecCC---cceEEeCCCcEEEEEEEEcccCCCCHHHHHHH
Confidence 36689999999999876533 1 224678888888 99999998644333 67788888888888764
No 273
>PRK14345 lipoate-protein ligase B; Provisional
Probab=36.76 E-value=22 Score=37.95 Aligned_cols=63 Identities=24% Similarity=0.463 Sum_probs=46.4
Q ss_pred CeEEeecCCccccCCCCeEE-EEE-EEEEEecccceEEEEEEEecCCccccc-eEEcccccccccccccc
Q 002911 767 DLKLVERPQNYTLAPESSKQ-IKA-NIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYISP 833 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~~~-~~~-~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~p 833 (867)
-|=++|.|+.+|++-++... +.+ .+.|-.|+-| |.|+|-+|+.---+ ++.|+. +.|+-+|+.-
T Consensus 44 ~llllEH~pVyT~Gr~~~~~~l~~~~i~v~~tdRG---G~iTyHGPGQLV~YpIldL~~-~~~v~~yv~~ 109 (234)
T PRK14345 44 TLLLLEHPAVYTAGKRTEPHERPTDGTPVVDVDRG---GKITWHGPGQLVGYPIIKLAE-PLDVVDYVRR 109 (234)
T ss_pred EEEEEcCCCCccCCCCCCccccccCCCcEEEecCC---CceeEeCCCeEEEEEEEecCC-CCCHHHHHHH
Confidence 35689999999999877532 222 3778889999 99999998644333 567777 6788888754
No 274
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=36.60 E-value=6.7e+02 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=34.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCC
Q 002911 100 NLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRH 144 (867)
Q Consensus 100 sL~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~ 144 (867)
.+.+-.+.|-+.+-+++++.|+.+..++-.+.+...+...+.+.+
T Consensus 9 ll~~~~~~~~~~~~~~~~~~L~ev~~~~~~~~~a~~LV~~f~~~~ 53 (333)
T cd05135 9 LLVESVQAPAEVEDSSALALLEEVTTVESRQDVAMKLVKIFLGQG 53 (333)
T ss_pred HHHhcccccccccchHHHHHHHhhcChHhHHHHHHHHHHHHHhcc
Confidence 344444666677888899999999888777888888888887766
No 275
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.40 E-value=9.8e+02 Score=30.16 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=56.8
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcc---hhhHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 002911 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCD---QDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKII 247 (867)
Q Consensus 171 ~~~ll~~lL~~D~D~~v~~~A~~~L~ei~---~~~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L 247 (867)
+.+.|+. |..|.=+.|+..|+..++.+- |+.--..|..+++.++.+..-.-...--+|..+-...|.-+.-+++-+
T Consensus 305 fievLe~-lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EI 383 (988)
T KOG2038|consen 305 FIEVLEE-LSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEI 383 (988)
T ss_pred HHHHHHH-HccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHH
Confidence 4556655 335666677888888777763 332233444555555544443333444444444555677777777778
Q ss_pred HHHHcCCChH--HHHHHHHHHHhc
Q 002911 248 ISLLNAPSTA--VIYECAGTLVSL 269 (867)
Q Consensus 248 ~~lL~s~s~a--V~~eaa~tL~~L 269 (867)
..++-.++.+ -.|-|+.+|-++
T Consensus 384 er~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 384 ERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred HHHHcccCccccceeehhhhhhhh
Confidence 7777765432 455566666543
No 276
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=36.33 E-value=44 Score=23.22 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCchhhHHHHHH
Q 002911 111 YIRGVTLRFLCRLNETEIIEPLIP 134 (867)
Q Consensus 111 ~IRglALr~Ls~I~~~el~e~L~~ 134 (867)
.+|-.|..+|++++.++.++.|+.
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~ 25 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIK 25 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHH
Confidence 578888888888888777665543
No 277
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=36.26 E-value=3.9e+02 Score=35.33 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhChhhHHH----HHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCH
Q 002911 297 LIVLDRLNELRSSHRDIMVD----LIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNG 372 (867)
Q Consensus 297 ~ivL~~L~~L~~~~p~~l~~----~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~ 372 (867)
-.+|+++..... +.+..+ ....+-..+.+-|++.+.+.++++..++...|++.....|.- + +|. .
T Consensus 127 v~~Ldrf~dfis--d~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~-i-ky~-------~ 195 (1549)
T KOG0392|consen 127 VLALDRFGDFIS--DNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLG-I-KYN-------V 195 (1549)
T ss_pred HHHHHHhccccc--ccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHH-H-HHH-------H
Confidence 344555555433 343333 222233346677888999999999999998899877766642 1 221 1
Q ss_pred HHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002911 373 EYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLD 439 (867)
Q Consensus 373 e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~ 439 (867)
..|+..+..+ ...+++..++.|.++..++...++.++..+...+++++..-+.+|+.
T Consensus 196 air~d~l~~~----------~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~ 252 (1549)
T KOG0392|consen 196 AIRQDLLFQL----------LNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVH 252 (1549)
T ss_pred HHHHHHHHHH----------HHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHH
Confidence 2455554422 23678888899999998888888888888777667666554444444
No 278
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.16 E-value=3.6e+02 Score=27.10 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=31.1
Q ss_pred HHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 002911 207 LLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTL 266 (867)
Q Consensus 207 L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~eaa~tL 266 (867)
+...++.+.-..+-.-..+++.+.=+.+.+++.+..++-.+...+.+.....+.-|+.-+
T Consensus 97 l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 97 LKELLDYLSFLPGDVAIGLLRALLPLIKFSPSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHGGGGGTTTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 334444443333333444555555555556666666666666666666666665555543
No 279
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=34.99 E-value=87 Score=29.15 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHccCCccHHHH-----HHHHHHH--HcCCCcccHHHHHHHHHHHHHhCcccH
Q 002911 374 YRQMLIQAIHSCAIKFPEVASTV-----VHLLMDF--LGDSNVASAIDVIIFVREIIEMNPKLR 430 (867)
Q Consensus 374 ~r~~lI~aI~~la~kf~~~a~~~-----v~~Ll~l--L~~~~~~v~~evi~~l~~ii~~~p~lr 430 (867)
||..+|+.|+.++.+.+.+-+.+ +..+++. +.+.++++.+-++..+|.+++.+|+-+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ 65 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ 65 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence 68888999998887766654433 3444443 334567777888888999988888744
No 280
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=34.96 E-value=2.7e+02 Score=34.34 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHccCCcc-HHHHHHHHHHHHcCCCcccHHHHHHHH-HHHHH
Q 002911 376 QMLIQAIHSCAIKFPEV-ASTVVHLLMDFLGDSNVASAIDVIIFV-REIIE 424 (867)
Q Consensus 376 ~~lI~aI~~la~kf~~~-a~~~v~~Ll~lL~~~~~~v~~evi~~l-~~ii~ 424 (867)
..+-..+.++..+||.. ..|.++.+++++.........+...++ +.+..
T Consensus 145 ~~l~~~l~ri~t~~ps~Fl~~~l~~i~~~~~~~~~~~~~~~~~~~L~~l~~ 195 (633)
T PF08568_consen 145 ELLQIVLKRIQTKYPSRFLAMALSAILNFLKNNPSEETIEDDEFVLRRLYG 195 (633)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 33444455677889987 889999999999876622223333443 65543
No 281
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=34.54 E-value=3e+02 Score=32.86 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-------------HHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHH
Q 002911 329 NLDIRRKTLDIVLELITPRNINEVVLMLKKE-------------VVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAST 395 (867)
Q Consensus 329 d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~ke-------------l~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~ 395 (867)
++.--++.+.=|.+-+|.+|+.+|+.+|..+ ++.... .+-|-.....-+..+-.+||.+.+.
T Consensus 160 nWEalkksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~a-----sp~ft~vyaALvAviNskfP~IgEl 234 (739)
T KOG2140|consen 160 NWEALKKSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAA-----SPGFTPVYAALVAVINSKFPQIGEL 234 (739)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhc-----CCCCcHHHHHHHHHHccCCchHHHH
Q ss_pred HHHHHHHHHcCCC----cccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchH------hHHHHHhhHhhccCCCCC
Q 002911 396 VVHLLMDFLGDSN----VASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAA------RVCTCALWIIGEYCQSLS 465 (867)
Q Consensus 396 ~v~~Ll~lL~~~~----~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~------~v~~~alWiLGEY~~~~~ 465 (867)
.+.-|+-.+..+- ....-.++.||..++..+-..---+++-|.-.|+.-++. .+.+-|-|-+.+-+...-
T Consensus 235 LlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr~~ 314 (739)
T KOG2140|consen 235 LLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPRAL 314 (739)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChHHH
Q ss_pred cHHHHHHHHHHhhCC
Q 002911 466 EVENGIATIKQCLGE 480 (867)
Q Consensus 466 ~i~~~~~~i~~~l~~ 480 (867)
+. +|+-+|..+-+
T Consensus 315 n~--IfErlR~ILhe 327 (739)
T KOG2140|consen 315 NG--IFERLRYILHE 327 (739)
T ss_pred hH--HHHHHHHHHhH
No 282
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=34.27 E-value=3.5e+02 Score=33.67 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=59.9
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH-----HHHHHHHHHHcCCC
Q 002911 334 RKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS-----TVVHLLMDFLGDSN 408 (867)
Q Consensus 334 ~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~-----~~v~~Ll~lL~~~~ 408 (867)
..+++||..+-.+ .-..++..|-.++. .+.+|-.++.-++.+..+-|+... ..++.|+.+|....
T Consensus 54 ~~~~~il~~~~~P-~~K~~~~~l~~~~~---------~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~ 123 (668)
T PF04388_consen 54 QRALEILVGVQEP-HDKHLFDKLNDYFV---------KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT 123 (668)
T ss_pred HHHHHHHHhcCCc-cHHHHHHHHHHHHc---------CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc
Confidence 4678888876544 22444444444433 357999999999999988887653 44556666665433
Q ss_pred cccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhHhhcc
Q 002911 409 VASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEY 460 (867)
Q Consensus 409 ~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWiLGEY 460 (867)
+ ..-+...+.-++---|..-..+...|-+.|. --.|.+.|-....
T Consensus 124 ~--~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~-----If~Rl~~W~~~~~ 168 (668)
T PF04388_consen 124 S--ITVVSSALLVLIMLLPHIPSSLGPHLPDLFN-----IFGRLLSWERKNP 168 (668)
T ss_pred c--HHHHHHHHHHHHHHhccccchhhHHHHHHHH-----HHHHHHHcccCCC
Confidence 2 1222234444454455443322222222211 2245667887633
No 283
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=33.87 E-value=1.7e+02 Score=28.31 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCC----c---hhhH-HHHHHHHHHhcCCC--ChHHHHHHHHHHHHhhc
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLN----E---TEII-EPLIPSVLQNLQHR--HPYIRRNAILAVMAIYK 160 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I~----~---~el~-e~L~~~V~~~L~d~--~pyVRK~A~lal~kI~~ 160 (867)
--++.+|+|-|+|+||.+.-.||..|-.+. . .++. ..++..+.+.+.++ ++.||+++...+..-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 578899999999999999999998886543 1 1221 22455566666553 34589988877777665
No 284
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=33.75 E-value=8.3e+02 Score=28.54 Aligned_cols=153 Identities=11% Similarity=0.214 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHccCCChhH
Q 002911 108 PNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSA 187 (867)
Q Consensus 108 pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~~lL~~D~D~~v 187 (867)
.|+-..+.-+..|+.+..++..+....-+-..|...+..++ +.+-|. ..+.- ..+...+ ++| .+.|...
T Consensus 62 ~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a--~~~k~-~~~~~fl-~ll-~r~d~~i 130 (442)
T KOG2759|consen 62 NNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYA--HKLKR-TEWLSFL-NLL-NRQDTFI 130 (442)
T ss_pred ccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHH--Hhhhc-cchHHHH-HHH-hcCChHH
Confidence 34566667777888888888888777777777755544443 333333 11111 1122334 333 5667766
Q ss_pred HHHHHHHHHhcc------hhh-HHH----HHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHH-----HHHHHHH
Q 002911 188 KRNAFLMLFTCD------QDR-AIN----YLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYI-----KIIISLL 251 (867)
Q Consensus 188 ~~~A~~~L~ei~------~~~-al~----~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li-----~~L~~lL 251 (867)
..-++..+..+. -+. ... +|...+++. ......+ ...+.+..+.+. |+.+..++ ..+...+
T Consensus 131 v~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~-~~~~~~~-~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l 207 (442)
T KOG2759|consen 131 VEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSS-TNNDYIQ-FAARCLQTLLRV-DEYRYAFVIADGVSLLIRIL 207 (442)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcc-CCCchHH-HHHHHHHHHhcC-cchhheeeecCcchhhHHHH
Confidence 553444443321 111 233 333444432 2222322 334444444443 22322222 3444444
Q ss_pred cCC--ChHHHHHHHHHHHhcCCChH
Q 002911 252 NAP--STAVIYECAGTLVSLSSAPT 274 (867)
Q Consensus 252 ~s~--s~aV~~eaa~tL~~Ls~~p~ 274 (867)
.|+ +--+.|+.+-++..|+-+|.
T Consensus 208 ~s~~~~~QlQYqsifciWlLtFn~~ 232 (442)
T KOG2759|consen 208 ASTKCGFQLQYQSIFCIWLLTFNPH 232 (442)
T ss_pred hccCcchhHHHHHHHHHHHhhcCHH
Confidence 322 33488888888888775554
No 285
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.69 E-value=4e+02 Score=31.99 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCcccccch----HHHHHHHHccC-CChhHHHHHHHHHHhcchh
Q 002911 141 QHRHPYIRRNAILAVMAIYKLPQGEQLLVDA----PEMIEKVLSTE-QDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 141 ~d~~pyVRK~A~lal~kI~~l~~~p~li~d~----~~ll~~lL~~D-~D~~v~~~A~~~L~ei~~~ 201 (867)
.|+|--+|.-|+.-+..|++ .+.++.... ...+.+.+.+. ++.++...|+..|.++..+
T Consensus 308 ~dnhwaLRDfAA~ll~~i~k--~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 308 LDNHWALRDFAARLLAQICK--NFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred ccchHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhh
Confidence 46788899999999999999 677665443 23333333333 6778888888888877664
No 286
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=32.97 E-value=2.3e+02 Score=27.86 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCC-------chhhH-HHHHHHHHHhcC------CCChHHHHHHHHHHHHhhc
Q 002911 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEII-EPLIPSVLQNLQ------HRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 95 iLv~NsL~KDL~~pNe~IRglALr~Ls~I~-------~~el~-e~L~~~V~~~L~------d~~pyVRK~A~lal~kI~~ 160 (867)
--++-+|+|-|+|+||.+.-.||..|-.+. ..+++ ..++..+.+.+. ..++-||.+.+..+..-..
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999888887654432 12222 233445555553 2567788877766655444
No 287
>PRK14346 lipoate-protein ligase B; Provisional
Probab=32.40 E-value=25 Score=37.44 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=48.1
Q ss_pred CeEEeecCCccccCCCCeEEE---EEEEEEEecccceEEEEEEEecCCccccc-eEEccccccccccccc
Q 002911 767 DLKLVERPQNYTLAPESSKQI---KANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYIS 832 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~~~~---~~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~ 832 (867)
-|=++|.|+.+|++.++...= ...|-|-.|+-| |.|+|-+|+.---+ ++.|+.-..|+-+|+.
T Consensus 34 ~llllEHppVyT~G~~~~~~~ll~~~~i~v~~tdRG---G~iTyHGPGQlV~YpildL~~~~~~vr~yv~ 100 (230)
T PRK14346 34 ELWICEHPPVYTQGLAGKADHVLNPGDIPVVATNRG---GQVTYHGPGQVVAYPLIDLRRAGYFVKEYVY 100 (230)
T ss_pred EEEEEcCCCCeeCCCCCChhhccCCCCCcEEEeCCC---cceeEECCCeEEEEEEEeccccCCCHHHHHH
Confidence 466899999999998876331 235678888888 99999998644333 6778888889888884
No 288
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=32.25 E-value=71 Score=21.93 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHh
Q 002911 147 IRRNAILAVMAI 158 (867)
Q Consensus 147 VRK~A~lal~kI 158 (867)
||+.|+.+++++
T Consensus 1 VR~~Aa~aLg~i 12 (27)
T PF03130_consen 1 VRRAAARALGQI 12 (27)
T ss_dssp HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHc
Confidence 556666666555
No 289
>PRK14347 lipoate-protein ligase B; Provisional
Probab=31.87 E-value=27 Score=36.65 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=44.3
Q ss_pred CeEEeecCCccccCCCCeEE---EEEEEEEEecccceEEEEEEEecCCccccc-eEEcccc--cccccccccc
Q 002911 767 DLKLVERPQNYTLAPESSKQ---IKANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDI--HIDIMDYISP 833 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~~~---~~~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i--~idi~dyi~p 833 (867)
-|=++|.|+.+|+|-++... ....+-|-.|+-| |.|+|-+|+.---+ ++.|+.- ..|+-+|++-
T Consensus 35 ~llllEH~pVyT~G~~~~~~~ll~~~~i~v~~t~RG---G~vTyHGPGQlV~YpIldL~~~~~~~~v~~yv~~ 104 (209)
T PRK14347 35 IVYLVEHSEVYTAGTNYKQEELLNYGDIPVIYTGRG---GKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKM 104 (209)
T ss_pred EEEEEcCCCCeeCCCCCChhhcccccCCcEEEecCC---cceEEeCCCcEEEEEEEeccccccCCCHHHHHHH
Confidence 35688999999999876522 1234678889999 99999998643333 5566543 4677777653
No 290
>PRK14342 lipoate-protein ligase B; Provisional
Probab=31.82 E-value=26 Score=36.96 Aligned_cols=63 Identities=21% Similarity=0.428 Sum_probs=46.7
Q ss_pred eEEeecCCccccCCCCeEE-E--EEEEEEEecccceEEEEEEEecCCccccc-eEEcccccccccccccc
Q 002911 768 LKLVERPQNYTLAPESSKQ-I--KANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYISP 833 (867)
Q Consensus 768 lk~v~~p~~~~l~p~~~~~-~--~~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~p 833 (867)
|=++|.|+.+|++-++... + ...+.|-.|+-| |.|+|-+|+.---+ ++.|+....|+-+|++-
T Consensus 38 llllEH~pVyT~Gr~~~~~~ll~~~~~~v~~~~RG---G~iTyHGPGQLV~YpIl~L~~~~~~~~~yv~~ 104 (213)
T PRK14342 38 IWLVEHPPVFTQGQAGKPEHILNPGDIPVVQSDRG---GQVTYHGPGQLVMYVLLDLKRLKLGVRQLVTA 104 (213)
T ss_pred EEEEcCCCCccCCCCCChhhccCCCCCcEEEecCC---CceEEECCCeEEEEEEEEccccCCCHHHHHHH
Confidence 4588999999999876532 1 224577888888 99999998644343 67788888888888754
No 291
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.61 E-value=5.2e+02 Score=33.62 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhHccCCccH-----HHHHHHHHHHHcCC-CcccHHHHHHHHHHHHHhCccc-----HHHHHHHHHHH
Q 002911 372 GEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFLGDS-NVASAIDVIIFVREIIEMNPKL-----RVSIITRLLDN 440 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~kf~~~a-----~~~v~~Ll~lL~~~-~~~v~~evi~~l~~ii~~~p~l-----r~~il~~L~~~ 440 (867)
+|-|.++..-+..++..|+--- ..++.+.++.|.+. .+...+=+...+..+-+.|++- |..+-++|+..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 4677888888888888887433 35666777777775 3445555667788888877765 45688899998
Q ss_pred hcccchHhHHHHHhhHhhccCCC
Q 002911 441 FYQIRAARVCTCALWIIGEYCQS 463 (867)
Q Consensus 441 L~~i~~~~v~~~alWiLGEY~~~ 463 (867)
|.+ ..++|++++++.+|.|-..
T Consensus 651 LsD-~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 651 LSD-PVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hcC-ccHHHHHHHHHHHHHHhcc
Confidence 887 6799999999999998553
No 292
>PRK14348 lipoate-protein ligase B; Provisional
Probab=31.44 E-value=31 Score=36.58 Aligned_cols=64 Identities=19% Similarity=0.416 Sum_probs=46.9
Q ss_pred CeEEeecCCccccCCCCeEE-EE--------EEEEEEecccceEEEEEEEecCCccccc-eEEcccccccccccccc
Q 002911 767 DLKLVERPQNYTLAPESSKQ-IK--------ANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYISP 833 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~~~-~~--------~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~p 833 (867)
-|=++|.|+.+|+|-++... +. ..+-|-.|+-| |.|+|-+|+.---+ ++.|..-..|+-+|++-
T Consensus 40 ~llllEH~pVyT~G~~~~~~~ll~~~~~l~~~~~~v~~t~RG---G~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~ 113 (221)
T PRK14348 40 RIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRG---GDITYHGPGQLVCYPILNLEEFGLGLKEYVHL 113 (221)
T ss_pred EEEEEcCCCCeeCCcCCCchhccCChhhhcccCCcEEEeCCC---CceEEECCCeEEEEEEEEccccCCCHHHHHHH
Confidence 36689999999999877532 21 13468889999 99999998643333 56777778888888753
No 293
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=31.38 E-value=9e+02 Score=34.62 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=77.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCC--------ChHH---HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH
Q 002911 246 IIISLLNAPSTAVIYECAGTLVSLSS--------APTA---IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM 314 (867)
Q Consensus 246 ~L~~lL~s~s~aV~~eaa~tL~~Ls~--------~p~~---lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l 314 (867)
++...+...++.++-.|+.++..+-. +|.. ++.....+..+-+..+|+.+++-++..+. ....+...
T Consensus 485 ~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~--~~~~~~la 562 (2341)
T KOG0891|consen 485 CVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN--ERFDAQLA 562 (2341)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc--cchhhhhc
Confidence 35556667788888888777765421 2222 56677888888889999999999988887 11223333
Q ss_pred HH-HHHhheecccCCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHh
Q 002911 315 VD-LIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKT 363 (867)
Q Consensus 315 ~~-~~~~il~~L~d~d~~IR~kaLelL~~Lv~~~Nv~~IV~~L~kel~~~ 363 (867)
++ .....+..+.+....++-.+.-++..+++ .|-..++..+++.....
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~-~~~a~vl~~lr~~~l~~ 611 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSS-YNPAYVLPSLRKTLLEL 611 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhcccccc-ccHHHHhHHHHHHHHHH
Confidence 32 12223446788888899988888887654 45577888887766554
No 294
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.29 E-value=3.9e+02 Score=30.82 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHhH-----ccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCccc
Q 002911 369 EKNGEYRQMLIQAIHSCA-----IKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL 429 (867)
Q Consensus 369 d~d~e~r~~lI~aI~~la-----~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~l 429 (867)
|.+..+|..+++.+-.+. +.-.+...|.+.-+...+....+++..+...|+.-++..+|..
T Consensus 110 D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 110 DDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred CccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 445667777766664422 2234455677777777777788889999999999999999654
No 295
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=30.02 E-value=1.9e+02 Score=29.02 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHH---HHHHHHHHHHcCCCcccHHHHHHHHHHHHH
Q 002911 348 NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS---TVVHLLMDFLGDSNVASAIDVIIFVREIIE 424 (867)
Q Consensus 348 Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~---~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~ 424 (867)
-..+|++.+.+.+....+ ......++.+..++.++|-.-. .-+..+++.+..-+..++.-.+.++.=+++
T Consensus 52 ~r~~Ile~l~~rI~~~s~-------~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~ 124 (158)
T PF14676_consen 52 IRSEILEQLLNRIVTKSS-------SPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIK 124 (158)
T ss_dssp GHHHHHHHHHHHHHH--S-------S--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCc-------cchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 334566666655554322 1112235666777777664432 334445555555566677777778888888
Q ss_pred hCcccHHHHHHHHHHHhcccchHhHHHHHh
Q 002911 425 MNPKLRVSIITRLLDNFYQIRAARVCTCAL 454 (867)
Q Consensus 425 ~~p~lr~~il~~L~~~L~~i~~~~v~~~al 454 (867)
..+++|+.++..|-..+.. ++..++..|+
T Consensus 125 ~s~~lrd~lilvLRKamf~-r~~~~R~~Av 153 (158)
T PF14676_consen 125 FSPSLRDSLILVLRKAMFS-RELDARQMAV 153 (158)
T ss_dssp T-HHHHHHHHHHHHHHTT--SSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHcc-ccHHHHHHHH
Confidence 8889998888888887754 3445555543
No 296
>PRK14015 pepN aminopeptidase N; Provisional
Probab=29.85 E-value=1.2e+03 Score=30.04 Aligned_cols=235 Identities=15% Similarity=0.181 Sum_probs=131.4
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHHhC------CCCC--CchhHHHHHhhcCCC--CcchHHHH-------HHHH
Q 002911 17 AIANEIKEALE-GNDVPAKVDAMKKAIMLLLN------GETL--PQLFITIVRYVLPSE--DHTIQKLL-------LLYL 78 (867)
Q Consensus 17 ~~~~eIr~~L~-s~~~~~K~~alkklI~l~~~------G~d~--s~l~~~VIk~v~~S~--d~~lKkL~-------Ylyl 78 (867)
++.+++.-.+. .+|.-.|.+|.++|..-.+. |.+. +.-|.+.++.++.++ |+.++-+. |+.
T Consensus 551 ~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~~~l~- 629 (875)
T PRK14015 551 YSDEDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLTLPSEAELA- 629 (875)
T ss_pred CCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccCCCHHHHH-
Confidence 46788888888 45667888888877653332 6654 778888888877543 33333221 111
Q ss_pred HHHhhcCCCC--CCCchHH-HHHHHHHHhc-------CCCCH-----------HHHHHHHHHhhcCCchhhHHHHHHHHH
Q 002911 79 EIIDKTDAKG--RVLPEMI-LICQNLRNNL-------QHPNE-----------YIRGVTLRFLCRLNETEIIEPLIPSVL 137 (867)
Q Consensus 79 ~~~~~~d~dg--~l~~Emi-Lv~NsL~KDL-------~~pNe-----------~IRglALr~Ls~I~~~el~e~L~~~V~ 137 (867)
+.+...|++. .-+..+. -+-..++.++ ..+.+ ..|..+|..|+....++..+.......
T Consensus 630 ~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~ 709 (875)
T PRK14015 630 EQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAELAEAQFD 709 (875)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHh
Confidence 2222233221 0000010 1112222222 22222 245667777777766665443222222
Q ss_pred ------------HhcCCCChHHHHHHHHHHHHhhccCCCccccc------------chHHHHHHHHc----cCCChhHHH
Q 002911 138 ------------QNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV------------DAPEMIEKVLS----TEQDPSAKR 189 (867)
Q Consensus 138 ------------~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~------------d~~~ll~~lL~----~D~D~~v~~ 189 (867)
.+|.+.+.--|..|+...+.-++ .+|-.+. +..+.+++++. +=.+|.-+|
T Consensus 710 ~a~~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~--~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~r 787 (875)
T PRK14015 710 QADNMTDRLAALSALVNADLPERDEALADFYDRWK--DDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVR 787 (875)
T ss_pred hCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHH
Confidence 23333333467777777777777 5664443 33455666442 235666677
Q ss_pred HHHHHHHhcchh-------hHHHHHHHHhhhcCccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCC
Q 002911 190 NAFLMLFTCDQD-------RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAP 254 (867)
Q Consensus 190 ~A~~~L~ei~~~-------~al~~L~~~l~~i~~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~ 254 (867)
+-+-.+..-++- .+.++|...+-++...+|-.-..+++.+.+.-+.+|.-+..+...|..++...
T Consensus 788 al~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~~~~~l~~i~~~~ 859 (875)
T PRK14015 788 SLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQALMRAALERIAALP 859 (875)
T ss_pred HHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHhCc
Confidence 766666544432 24667777776777777877777788888877777777777777777776654
No 297
>PF12744 ATG19_autophagy: Autophagy protein Atg19, Atg8-binding; InterPro: IPR024543 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are sequestered into double-membrane vesicles to form the autophagosome. The contents of the autophagosome are delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. In contrast to autophagy, the cytoplasm to vacuole transport (Cvt) pathway is a highly selective process that involves the sequestration of at least two specific cargos that are resident vacuolar hydrolases: aminopeptidase I (Ape1) and alpha-mannosidase (Ams1). These proteins are sequestered within a double-membrane vesicle, termed a Cvt vesicle. The Cvt vesicle is fairly consistent in size, and is much smaller than the autophagosome, being 140-160 nm in diameter. The genes involved in autophagy in yeast are termed autophagy-related (Atg) genes. Autophagy and the Cvt pathway are topologically and mechanistically similar and share most of the Atg components []. The precursor of Ape1 (prApe1) is sequestered within either Cvt vesicles or autophagosomes, depending on the nutrient conditions, and delivered to the vacuole. Atg19 is a peripheral membrane protein with differing binding sites for both Ape1 and Ams1. Atg19 plays a central role in cargo sorting and transport to the vacuole by linking Ams1 and prApe1 to Atg8 and Atg11 []. This entry represents the C-terminal region of Atg19 and homologue Atg34 (Yol083wp) [, ]. The Atg8-binding region is thought to be in the very C-terminal residues [].; PDB: 2KZK_A 2ZPN_H 2KZB_A.
Probab=29.52 E-value=69 Score=34.24 Aligned_cols=88 Identities=24% Similarity=0.206 Sum_probs=42.0
Q ss_pred EeeeecceeEEEEEEeecCccccc-ceEEEEEecCCeEEeecCCccccCCCCeEEEEEEEEEEecccceE------EEEE
Q 002911 733 YVTVHHYDIVLDVTVINRTKETLQ-NLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVI------FGNI 805 (867)
Q Consensus 733 ~v~v~~~di~ldvl~vNqt~~tlq-n~~~el~t~g~lk~v~~p~~~~l~p~~~~~~~~~ikv~ste~g~i------fg~i 805 (867)
-|+|.+=|-.|..-|.|.|+.+|- |+++.|.....++.-=...|+-|+|+..+.++...--.|+.++.. -|.+
T Consensus 85 ~Vtv~~~D~~L~F~L~N~g~~~lpg~l~Lvf~~~~~i~~~i~mGPHel~pg~~K~L~~~~~~~s~~~~~~i~iv~~dg~v 164 (236)
T PF12744_consen 85 EVTVSKRDFSLTFTLYNNGDSTLPGNLTLVFSSSNSISCTIDMGPHELGPGSKKILKFFPSNCSNLQPSTIDIVDQDGDV 164 (236)
T ss_dssp EEEEEEETTEEEEEEEE-SSS---SS-EEEBS---SSSB-EE--SS---TT-EEEEEESS---S--TT--EEEE-TTSSE
T ss_pred EEEEEEecceEEEEEEcCCCcccCCCceEEEEeccceeEEeccCCcccCCCcceeeEecccCCCCcccceEEEecCCCcE
Confidence 378888899999999999999995 677777111122212233678888998888887333334444433 3677
Q ss_pred EEecCCccccceEEcc
Q 002911 806 VYETSNVLERTVVVLN 821 (867)
Q Consensus 806 ~y~~~~~~~~~~v~ln 821 (867)
+|-|+.+. .+-+.|+
T Consensus 165 iy~Gk~s~-~~~~~Lk 179 (236)
T PF12744_consen 165 IYTGKSSG-SNNFNLK 179 (236)
T ss_dssp EEEE---S-SS-EE--
T ss_pred EEEEecCC-CCceEec
Confidence 88887543 2455555
No 298
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=28.80 E-value=69 Score=32.56 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHhHccCC
Q 002911 370 KNGEYRQMLIQAIHSCAIKFP 390 (867)
Q Consensus 370 ~d~e~r~~lI~aI~~la~kf~ 390 (867)
+..|..+.+++++..+..+.|
T Consensus 130 k~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 130 KQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp HHHHHHHHHHHHHHHH-HSST
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 334566666666666655554
No 299
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.65 E-value=1e+03 Score=31.54 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchHHHHHHHHHHHhhc-CCCCCCCchHHHHHHHHHHhcCCCCHHHH
Q 002911 35 VDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKT-DAKGRVLPEMILICQNLRNNLQHPNEYIR 113 (867)
Q Consensus 35 ~~alkklI~l~~~G~d~s~l~~~VIk~v~~S~d~~lKkL~Ylyl~~~~~~-d~dg~l~~EmiLv~NsL~KDL~~pNe~IR 113 (867)
+.||+.++..-. .++-.+|.-|..+ +. ++.-.|+..+.+. -......-+..=+.|...--+-|++.-||
T Consensus 491 r~AL~nLL~~N~------dLl~~~IdrCYss-~~---~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR 560 (1120)
T PF14228_consen 491 RRALKNLLEHNP------DLLDWVIDRCYSS-SP---RVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIR 560 (1120)
T ss_pred HHHHHHHHHhhH------HHHHHHHHHhcCC-Ch---hHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHH
Confidence 366766665322 4888899888543 43 3333333333221 11111111222234666777899999999
Q ss_pred HHHHHHhhcCCchhhHHH---HHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc
Q 002911 114 GVTLRFLCRLNETEIIEP---LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL 167 (867)
Q Consensus 114 glALr~Ls~I~~~el~e~---L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l 167 (867)
..|++.|.-+........ -.......+.++.|-|-|+|..-+.+.+.. .+|++
T Consensus 561 ~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~-~hPEL 616 (1120)
T PF14228_consen 561 SKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK-QHPEL 616 (1120)
T ss_pred HHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH-hChhh
Confidence 999998886653332211 012233456677888888888777776552 44544
No 300
>PRK14343 lipoate-protein ligase B; Provisional
Probab=27.51 E-value=33 Score=36.65 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=45.2
Q ss_pred CeEEeecCCccccCCCCeE-EEE---EEEEEEecccceEEEEEEEecCCccccc-eEEccccccccccccc
Q 002911 767 DLKLVERPQNYTLAPESSK-QIK---ANIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYIS 832 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~~-~~~---~~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~ 832 (867)
-|=++|.|+.+|+|-++.. ++- ..+-|-.|+-| |-|+|-+|+.---+ ++.|+.-..|+-+|++
T Consensus 46 ~llllEHppVyT~G~~~~~~~ll~~~~~i~v~~tdRG---G~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~ 113 (235)
T PRK14343 46 EIWLVEHPPVYTLGQAGDPAHLLVADSGIPLVKVDRG---GQITYHGPGQVVAYLLLDLRRRKLMVRELVT 113 (235)
T ss_pred EEEEECCCCCeeCCCCCChhhccCCcCCCCEEEeCCC---CceeEeCCCeEEEEEEEEccccCCCHHHHHH
Confidence 3558999999999987652 221 13567777888 99999998644333 5677787888888875
No 301
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=27.24 E-value=1.3e+03 Score=28.63 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHhheecc
Q 002911 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM--------VDLIMDVLRAL 325 (867)
Q Consensus 254 ~s~aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l--------~~~~~~il~~L 325 (867)
.+..=.-+|-+.|.++...|.+...+- ..|..+..|.-+|++|+.|.++....-.++ ..++..++ +-
T Consensus 26 g~g~~q~qAq~iLtkFq~~PdaWtkad----~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyvv~~v-I~ 100 (1053)
T COG5101 26 GDGRKQEQAQRILTKFQELPDAWTKAD----YILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLV-IE 100 (1053)
T ss_pred CCchhHHHHHHHHHHHHhCchHHHHHH----HHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHHHHHH-HH
Confidence 333445567777778877776665443 234567788999999999999886533333 23333332 23
Q ss_pred cCCCHHHHHHHHHHHhcc-------C---CCCcHHHHHHHHH
Q 002911 326 NSPNLDIRRKTLDIVLEL-------I---TPRNINEVVLMLK 357 (867)
Q Consensus 326 ~d~d~~IR~kaLelL~~L-------v---~~~Nv~~IV~~L~ 357 (867)
.+.|..+|.+-=.++-++ . =++|+...+.+|.
T Consensus 101 ~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli 142 (1053)
T COG5101 101 KSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELI 142 (1053)
T ss_pred hcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHH
Confidence 455666766533333221 1 2566666665544
No 302
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=27.12 E-value=1.1e+03 Score=27.77 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHhccC----------CCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHc-----------
Q 002911 329 NLDIRRKTLDIVLELI----------TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI----------- 387 (867)
Q Consensus 329 d~~IR~kaLelL~~Lv----------~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~----------- 387 (867)
+...-..+|.+++++. ....+..++..|.+.+.. ... ..........+|.++..+-.
T Consensus 152 ~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~-~~~-~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~ 229 (446)
T PF10165_consen 152 DEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPP-PPS-SPPLDPPHSHAINALLNLPLECLDSLLSPKF 229 (446)
T ss_pred hHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhcc-CCC-CCcchhhHHHHHHHHhCCChHHHhhhhcccC
Confidence 5566777888888773 223344455555433211 111 13345677777777765521
Q ss_pred -----cCCccHHHHHHHHHHHHcCCC--------cccHHHHHHHHHHHHHhC
Q 002911 388 -----KFPEVASTVVHLLMDFLGDSN--------VASAIDVIIFVREIIEMN 426 (867)
Q Consensus 388 -----kf~~~a~~~v~~Ll~lL~~~~--------~~v~~evi~~l~~ii~~~ 426 (867)
.+......+++.|+++|...- +....-++..++++.+..
T Consensus 230 ~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 230 QQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred CcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 122334567777777765321 122333445666665543
No 303
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=27.04 E-value=1.9e+02 Score=32.02 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcC----------CCChHHHHHHHHHHHHhhccCCCcccccc----h-HHHHHHHHccCCChhHHHHHH
Q 002911 128 IIEPLIPSVLQNLQ----------HRHPYIRRNAILAVMAIYKLPQGEQLLVD----A-PEMIEKVLSTEQDPSAKRNAF 192 (867)
Q Consensus 128 l~e~L~~~V~~~L~----------d~~pyVRK~A~lal~kI~~l~~~p~li~d----~-~~ll~~lL~~D~D~~v~~~A~ 192 (867)
-+..++|+|..|+- |.|-.+|+-|+.-+.-.++ .+++.... . ..+++.||..+.--+....|+
T Consensus 274 Y~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~--~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGal 351 (450)
T COG5095 274 YLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFS--NFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGAL 351 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHh--hhhHhhhhhchHHHHHHHHHHHhcccccchhhhhh
Confidence 34667888877762 4455699999998888887 66644322 1 123444444444445555555
Q ss_pred HHHHhcch
Q 002911 193 LMLFTCDQ 200 (867)
Q Consensus 193 ~~L~ei~~ 200 (867)
..|.-+..
T Consensus 352 kgls~l~k 359 (450)
T COG5095 352 KGLSILSK 359 (450)
T ss_pred hhhhhhch
Confidence 55444433
No 304
>PHA03159 hypothetical protein; Provisional
Probab=26.67 E-value=55 Score=31.37 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=38.8
Q ss_pred hhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCcccccch
Q 002911 120 LCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA 171 (867)
Q Consensus 120 Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~ 171 (867)
|++|+-..++|.+...-..|-...++.|| |+..+.+-|. +++.+.||+
T Consensus 1 mssi~fq~~ie~il~~cq~~~~~~dsivr--aihsvi~qyn--kfe~lmpdf 48 (160)
T PHA03159 1 MSSIKFQKIIENILKECQDCHHQQDSIVR--AIHSVIHQYN--KFEALMPDF 48 (160)
T ss_pred CCcccHHHHHHHHHHHHHhcchhhhHHHH--HHHHHHHHHh--hHHHhCCCc
Confidence 46788888888888888888777788887 7888888888 888888875
No 305
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=26.62 E-value=1.3e+02 Score=31.39 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCccc
Q 002911 101 LRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL 167 (867)
Q Consensus 101 L~KDL~~pNe~IRglALr~Ls~I~~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p~l 167 (867)
+.+=..|+|...|-.|+-+.-+.....=.+.+...+..++.|++-||+|..--++..+.+ .+|+.
T Consensus 120 l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k--~d~~~ 184 (208)
T cd07064 120 MDEWSTDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSK--TNPDW 184 (208)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc--cCHHH
Confidence 334446888888877776554444333346677778889999999999999999999999 77643
No 306
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.59 E-value=1.7e+02 Score=34.47 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhc
Q 002911 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFY 442 (867)
Q Consensus 372 ~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~ 442 (867)
.++--...++|..++..-.+-......+||+.+..++..++.-++..+-++.-++|.+|..+++.+-+.|+
T Consensus 21 ~~~~p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii~n~~efLe 91 (661)
T KOG2374|consen 21 QEVDPRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLIIENLDEFLE 91 (661)
T ss_pred cccChHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHHhCHHHHHH
Confidence 34555666777666643333456788999999999999999999999999988899999999988888764
No 307
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.48 E-value=1.7e+03 Score=30.03 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=28.3
Q ss_pred cCCCChHHHHHHHHHHHHhhccCCCcccccchHHHHH
Q 002911 140 LQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (867)
Q Consensus 140 L~d~~pyVRK~A~lal~kI~~l~~~p~li~d~~~ll~ 176 (867)
...++.-||.+..-|+..|.+- .++.++.+|+.+++
T Consensus 851 ~s~~~~evr~~sl~~l~silet-~ge~ll~~w~sV~e 886 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILET-VGEHLLHGWQSVFE 886 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhc-cchhhccccHHHHH
Confidence 3568889999999999999985 56777777765544
No 308
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.16 E-value=5.8e+02 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 127 EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 127 el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
+..+-++|.+...++|.++.+|..++.++.++..
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~ 148 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLE 148 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4456689999999999999999999999999988
No 309
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=26.04 E-value=1e+03 Score=27.14 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHH----hheecccCCCHHHHHHHHHHHhcc
Q 002911 291 SDNNVKLIVLDRLNELRSSHRDIMVDLIM----DVLRALNSPNLDIRRKTLDIVLEL 343 (867)
Q Consensus 291 sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~----~il~~L~d~d~~IR~kaLelL~~L 343 (867)
+..++-+-.|..+..+..++|..+..|.. .++..+-+....||.+|+.++..+
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34577777777778888889988866543 455555666788999988877643
No 310
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=25.85 E-value=1e+02 Score=29.61 Aligned_cols=39 Identities=13% Similarity=0.331 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCc
Q 002911 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE 165 (867)
Q Consensus 125 ~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~l~~~p 165 (867)
++.-+..++..+.+-|+|++|+|+.+|+-.|-.+.. .++
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~--~G~ 70 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE--KGN 70 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh--hCC
Confidence 445566677777888888888888888888877777 554
No 311
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=4.9e+02 Score=30.08 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=70.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhheec----ccCCCHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHH
Q 002911 289 SQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRA----LNSPNLDIRRKTLDIVLE----LITPRNINEVVLMLKKEV 360 (867)
Q Consensus 289 ~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~il~~----L~d~d~~IR~kaLelL~~----Lv~~~Nv~~IV~~L~kel 360 (867)
++..-++|--+|..|..+...||..+..|...++.+ ..|+|..+|.....++-. ++... +...+..++.|+
T Consensus 68 kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~~l~~~yi 146 (393)
T KOG2149|consen 68 KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMVSLLMPYI 146 (393)
T ss_pred cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchHHHHHHHH
Confidence 566778899999999998888998887665555543 467788888877665544 44444 555566666565
Q ss_pred HHhhcCCccCCHHHHHHHHHHHHHhHccCCccH
Q 002911 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA 393 (867)
Q Consensus 361 ~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a 393 (867)
...... ..++.|.+..+-+..+..+||+..
T Consensus 147 ~~AMTh---it~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 147 SSAMTH---ITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHhh---ccHHHHHhhHHHHHHHHHHcChHH
Confidence 442221 257889999999998998887653
No 312
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=25.73 E-value=98 Score=22.39 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 002911 243 YIKIIISLLNAPSTAVIYECAGTLVSLS 270 (867)
Q Consensus 243 li~~L~~lL~s~s~aV~~eaa~tL~~Ls 270 (867)
.++.+.+++++.++.++.+|+.+|.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4567777888778888888888887764
No 313
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=25.18 E-value=6.8e+02 Score=24.82 Aligned_cols=119 Identities=15% Similarity=0.218 Sum_probs=70.2
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHH
Q 002911 335 KTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAID 414 (867)
Q Consensus 335 kaLelL~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~e 414 (867)
+.+.-+++=+++.|++.++..|.+.... .+++....+++.|...+..-|.....+..++-. +.
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~-------~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~-l~--------- 64 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWS-------DDPETLKEIVKLIFEKAVEEPNFSPLYARLCAA-LN--------- 64 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH-HH---------
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH-Hh---------
Confidence 4455556656799999999988866543 257899999999999887766555444443333 22
Q ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHhcc---------c--chHhHHHHHhhHhhccCC-CCCcHHHHHHHHHHhhC
Q 002911 415 VIIFVREIIEMNP-KLRVSIITRLLDNFYQ---------I--RAARVCTCALWIIGEYCQ-SLSEVENGIATIKQCLG 479 (867)
Q Consensus 415 vi~~l~~ii~~~p-~lr~~il~~L~~~L~~---------i--~~~~v~~~alWiLGEY~~-~~~~i~~~~~~i~~~l~ 479 (867)
...| +++..++..+.+.+.. - ....-..+.+..+||-.. ..=+...+++.++..++
T Consensus 65 ---------~~~~~~f~~~ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~ 133 (209)
T PF02854_consen 65 ---------SRFPSEFRSLLLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLS 133 (209)
T ss_dssp ---------HHCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred ---------ccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHh
Confidence 2223 3344444444444332 1 123446777777787532 22234456666666554
No 314
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=25.08 E-value=5e+02 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHhcCC
Q 002911 241 GKYIKIIISLLNAP-STAVIYECAGTLVSLSS 271 (867)
Q Consensus 241 ~~li~~L~~lL~s~-s~aV~~eaa~tL~~Ls~ 271 (867)
..+++.+..+|.+. +..++.|+.+++..++.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA 40 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 35666666666654 35677777777777654
No 315
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=24.99 E-value=40 Score=34.76 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=45.2
Q ss_pred CeEEeecCCccccCCCCeE-EEEE-----EEEEEecccceEEEEEEEecCCccccc-eEEccccccccccccc
Q 002911 767 DLKLVERPQNYTLAPESSK-QIKA-----NIKVSSTETGVIFGNIVYETSNVLERT-VVVLNDIHIDIMDYIS 832 (867)
Q Consensus 767 ~lk~v~~p~~~~l~p~~~~-~~~~-----~ikv~ste~g~ifg~i~y~~~~~~~~~-~v~ln~i~idi~dyi~ 832 (867)
-|=++|.|+.+|++-++.. ++.. .+.|-.|+-| |.|+|-+|+.---+ ++.|+....|+-+|+.
T Consensus 14 ~llllEH~pVyT~G~~~~~~~l~~~~~~~~~~v~~~~RG---G~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~ 83 (184)
T TIGR00214 14 EIMLVEHYPVYTQGQAGKTEHLLFDPDIPPAEVVQSERG---GQVTYHGPGQQVMYVILDLKRFQLDVRWLVT 83 (184)
T ss_pred EEEEECCCCCeeCCCCCChhhccCCcCCCcceEEEeCCC---CeeEEECCCeEEEEEEEEchhcCCCHHHHHH
Confidence 3668999999999988632 2221 2347788888 99999998644333 6777777788888765
No 316
>KOG4712 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.68 E-value=1.6e+03 Score=28.98 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCChH
Q 002911 220 LLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTA 257 (867)
Q Consensus 220 ~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s~a 257 (867)
-.|..+.+.+++. +.+|.....|.--+..+.++.+++
T Consensus 72 ~fq~~~~~tlr~~-~~~p~~~~~fv~gl~~yi~d~d~~ 108 (1335)
T KOG4712|consen 72 AFQKKLFQTLRRH-PSYPKIIEEFVSGLESYIEDEDSF 108 (1335)
T ss_pred HHHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhcCcchh
Confidence 3466777766654 456777777777777777776554
No 317
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=24.48 E-value=6.2e+02 Score=24.90 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC--hHHH-----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 002911 237 KGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTAI-----RAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (867)
Q Consensus 237 p~~~~~li~~L~~lL~s~s~aV~~eaa~tL~~Ls~~--p~~l-----k~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~ 308 (867)
+......++.|...|++.++.|.+-|..+|-.+..+ +... +.....+++++....+++||--+|+.+.....
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 455567778888888888888888877777665432 1111 12333444555444677888777777766654
No 318
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.96 E-value=6e+02 Score=23.73 Aligned_cols=62 Identities=18% Similarity=0.371 Sum_probs=47.8
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHhhcCC-----chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Q 002911 97 ICQNLRNNLQ-HPNEYIRGVTLRFLCRLN-----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (867)
Q Consensus 97 v~NsL~KDL~-~pNe~IRglALr~Ls~I~-----~~el~e~L~~~V~~~L~d~~pyVRK~A~lal~kI~~ 160 (867)
+...+.+-|+ +.++-.|..+.-.++.+. ++++++.++..|.+....... .|.|++|+..+++
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 3466777777 777888888888777765 577788888877777766655 7889999999998
No 319
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.88 E-value=3.7e+02 Score=32.39 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=74.0
Q ss_pred HHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHhHHHHHhhH
Q 002911 377 MLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWI 456 (867)
Q Consensus 377 ~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l~~ii~~~p~lr~~il~~L~~~L~~i~~~~v~~~alWi 456 (867)
.+++-+...+++-|+...-.++.++-+|....+....-+-....-|.++.|+.-+..+..|+..+.+-....+.-.++-+
T Consensus 181 ~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ 260 (851)
T KOG3723|consen 181 MLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKE 260 (851)
T ss_pred HHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 35666666777777776667777777777665433333334444556778888788888888888877777888888888
Q ss_pred hhccCCCCCcHHHHHHHHHHhhCCCCccC
Q 002911 457 IGEYCQSLSEVENGIATIKQCLGELPFFS 485 (867)
Q Consensus 457 LGEY~~~~~~i~~~~~~i~~~l~~~p~~~ 485 (867)
|..|+...- ..+++.++......|-..
T Consensus 261 ia~~~pv~l--~~~~E~l~e~~~~~p~~~ 287 (851)
T KOG3723|consen 261 IAVYEPVAL--NSFLEMLKEIGERFPYLT 287 (851)
T ss_pred HHhcCccch--hhHHHHHHHHHHhCCCcc
Confidence 888877543 456777777666665443
No 320
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.39 E-value=2.5e+02 Score=25.06 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=39.8
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHhh---e-ecccCCCHHHHHHHHHHH
Q 002911 278 AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDV---L-RALNSPNLDIRRKTLDIV 340 (867)
Q Consensus 278 ~aa~~li~ll~~~sD~Nvk~ivL~~L~~L~~~~p~~l~~~~~~i---l-~~L~d~d~~IR~kaLelL 340 (867)
....++..++...++..+|-.+|+.+.+|...+.+-+..=-..+ + .+..+++..+-+.|.+++
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45567777766677888888899988888875554443211122 2 224456677777776665
No 321
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.95 E-value=1.8e+02 Score=34.18 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=48.5
Q ss_pred cceeEEEEEEeecCcccccceEEEE-EecCCeEEeecCCcc-ccCCCCeEEEEEEEEEE-ecccc
Q 002911 738 HYDIVLDVTVINRTKETLQNLCLEL-ATMGDLKLVERPQNY-TLAPESSKQIKANIKVS-STETG 799 (867)
Q Consensus 738 ~~di~ldvl~vNqt~~tlqn~~~el-~t~g~lk~v~~p~~~-~l~p~~~~~~~~~ikv~-ste~g 799 (867)
.=|+.+.+.|-|.-+.+|.|+.+++ .++| ..+=-.|..+ -|.|++..++.++|||- .|.+|
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~Pqg-Wei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aG 459 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQG-WEIEVDESTIPSLEPGESKTVSLTITVPEDAGAG 459 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCcc-ceEEECcccccccCCCCcceEEEEEEcCCCCCCC
Confidence 4577899999999999999999999 5666 5554444444 49999999999999995 45566
No 322
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=21.74 E-value=1.3e+02 Score=26.15 Aligned_cols=54 Identities=28% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccCCCccccc--chHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002911 148 RRNAILAVMAIYKLPQGEQLLV--DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (867)
Q Consensus 148 RK~A~lal~kI~~l~~~p~li~--d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~~ 201 (867)
+|.|..|+++|..-+.+-.+++ ++++.+-++-...+-.+++..||.+|.-+...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 5788899999987322334443 34444444444666778999999999988754
No 323
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=21.66 E-value=2.2e+03 Score=29.55 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=58.5
Q ss_pred HHHHHHHhhhcCchhHHHHHHHHHHH--HcCCCh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHccCCCHHHHHHHHH
Q 002911 225 VLELIRKVCRTNKGEKGKYIKIIISL--LNAPST-AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLD 301 (867)
Q Consensus 225 iL~ll~~~~~~~p~~~~~li~~L~~l--L~s~s~-aV~~eaa~tL~~Ls~~p~~lk~aa~~li~ll~~~sD~Nvk~ivL~ 301 (867)
++.+|..++..++.....|++.|.++ |+++.. -|...|...|+.-.+. ..-..-+..+...-+...-.+.+--.++
T Consensus 965 v~~ll~~l~~~s~~~~~~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~ps~-~~R~n~~e~i~~s~i~~~g~~~~~~~~~ 1043 (2196)
T KOG0368|consen 965 VLALLDQLKPPSSKVSDEFRDILRKLTELNHTNTSEVALKARQILIQSPSY-ELRHNQIESILKSSIVMTGYQFKKPCLE 1043 (2196)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHhhccchHHHHHHHHHHHHHhCcch-hhhHHHHHHHHHhhhhcccCcccccchh
Confidence 44455556665555555666666654 344433 3888888887776321 1111222222222111112233334455
Q ss_pred HHHHHHhhChhhHHHHHHhheecccCCCHHHHHHHHHHHhc
Q 002911 302 RLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLE 342 (867)
Q Consensus 302 ~L~~L~~~~p~~l~~~~~~il~~L~d~d~~IR~kaLelL~~ 342 (867)
.|.++...+-.++.- +...+.+.|+.|+..++++-..
T Consensus 1044 ~l~~lidS~~~v~dv----L~~fF~H~d~~v~~~alevYv~ 1080 (2196)
T KOG0368|consen 1044 ILKELIDSNLSVFDV----LPGFFYHSDPTVSSAALEVYVR 1080 (2196)
T ss_pred HHHhhccchhhHHHH----HHHhhccccHHHHHHHHHHHHH
Confidence 555555444444432 3334567889999999987554
No 324
>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=21.23 E-value=60 Score=29.92 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=17.0
Q ss_pred EEEEEEecCC----ccccceEEcccc
Q 002911 802 FGNIVYETSN----VLERTVVVLNDI 823 (867)
Q Consensus 802 fg~i~y~~~~----~~~~~~v~ln~i 823 (867)
|||++|++.+ +.-+.+||.|.+
T Consensus 21 fgN~Yye~r~~ds~gr~RRwVIYngy 46 (118)
T COG3761 21 FGNVYYEGRNIDSEGRTRRWVIYNGY 46 (118)
T ss_pred ccceeeeccCCccCCCeeeEEEEcCc
Confidence 8999999853 335669999975
No 325
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=21.06 E-value=8.2e+02 Score=24.26 Aligned_cols=114 Identities=17% Similarity=0.259 Sum_probs=65.4
Q ss_pred HhccCCCCcHHHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHhHccCCccHHHHHHHHHHHHcCCCcccHHHHHHHH
Q 002911 340 VLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFV 419 (867)
Q Consensus 340 L~~Lv~~~Nv~~IV~~L~kel~~~~~~~~d~d~e~r~~lI~aI~~la~kf~~~a~~~v~~Ll~lL~~~~~~v~~evi~~l 419 (867)
+.+=+++.|++.++.+|.+... .+++.+..+++.+...+..-|.....+...+.. +...
T Consensus 7 ~lnkLs~~n~~~~~~~l~~~~~--------~~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~-l~~~------------ 65 (200)
T smart00543 7 LINKLSPSNFESIIKELLKLNN--------SDKNLRKYILELIFEKAVEEPNFIPAYARLCAL-LNAK------------ 65 (200)
T ss_pred HHhhCCHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-HHHH------------
Confidence 3333457899999988874432 135799999999999888776554433333322 2211
Q ss_pred HHHHHhCcccHHHHHHHHHHHhcc----c--chHhHHHHHhhHhhcc-CCCCCcHHHHHHHHHHhhCC
Q 002911 420 REIIEMNPKLRVSIITRLLDNFYQ----I--RAARVCTCALWIIGEY-CQSLSEVENGIATIKQCLGE 480 (867)
Q Consensus 420 ~~ii~~~p~lr~~il~~L~~~L~~----i--~~~~v~~~alWiLGEY-~~~~~~i~~~~~~i~~~l~~ 480 (867)
.|+.+..++..+.+.|.. . ...+-..+.+..+||- ....-.....++.++..+..
T Consensus 66 ------~~~f~~~ll~~~~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~ 127 (200)
T smart00543 66 ------NPDFGSLLLERLQEEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLND 127 (200)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhc
Confidence 123334444444444432 1 1234577888888884 33333445667777777753
No 326
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.00 E-value=1.3e+02 Score=30.32 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=18.9
Q ss_pred heecccCCCHHHHHHHHHHHhccC
Q 002911 321 VLRALNSPNLDIRRKTLDIVLELI 344 (867)
Q Consensus 321 il~~L~d~d~~IR~kaLelL~~Lv 344 (867)
|..+|.+++..+|..++++|..+|
T Consensus 163 i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 163 IALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
Confidence 566888999999999999998764
No 327
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=20.88 E-value=1.6e+02 Score=31.72 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHhccC-CCCcHHHH
Q 002911 328 PNLDIRRKTLDIVLELI-TPRNINEV 352 (867)
Q Consensus 328 ~d~~IR~kaLelL~~Lv-~~~Nv~~I 352 (867)
...+=|+.+||.+.+|+ .++||+-|
T Consensus 136 ~~lSPqrlaLEaLcKLsV~e~NVDli 161 (257)
T PF12031_consen 136 SPLSPQRLALEALCKLSVIENNVDLI 161 (257)
T ss_pred CCCCHHHHHHHHHHHhheeccCccee
Confidence 44667888888888876 67777654
No 328
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=20.67 E-value=1.4e+02 Score=31.52 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=15.8
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002911 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (867)
Q Consensus 170 d~~~ll~~lL~~D~D~~v~~~A~~~L~ei~~ 200 (867)
+..++++..| .|.+..|+-+-=-+|.++..
T Consensus 154 ~if~i~E~~l-~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 154 EIFEIIELLL-GDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHh
Confidence 4455555543 55555555555555555544
No 329
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=20.58 E-value=1.7e+03 Score=29.39 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=35.9
Q ss_pred ccchHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCC--hHHHHHHHHHHHhcCCC
Q 002911 216 EWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPS--TAVIYECAGTLVSLSSA 272 (867)
Q Consensus 216 ~~~p~lQ~~iL~ll~~~~~~~p~~~~~li~~L~~lL~s~s--~aV~~eaa~tL~~Ls~~ 272 (867)
+.|-.+|+..|+-+..+- ....+ .+|.+.|.+.- --|+++||.+|......
T Consensus 654 drDVvAQ~EAI~~le~~p----~~~s~--~~L~rtl~der~FyrIR~~Aa~aLak~a~~ 706 (1180)
T KOG1932|consen 654 DRDVVAQMEAIESLEALP----STASR--SALTRTLEDERYFYRIRIAAAFALAKTANG 706 (1180)
T ss_pred cccHHHHHHHHHHHHcCC----cchhH--HHHHHHHhhcchhhHHHHHHHHHHHHhhcc
Confidence 466778999998887763 22222 66777676654 46999999999887543
No 330
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=20.55 E-value=5e+02 Score=24.27 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhccCCCcccccch-HHHHHHHHccCCChhH-HHHHHHHHHhcchh
Q 002911 127 EIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQLLVDA-PEMIEKVLSTEQDPSA-KRNAFLMLFTCDQD 201 (867)
Q Consensus 127 el~e~L~~~V~~~L~-d~~pyVRK~A~lal~kI~~l~~~p~li~d~-~~ll~~lL~~D~D~~v-~~~A~~~L~ei~~~ 201 (867)
+++..+.|.+.+.|. ...+-.|=.|++-+..+.. +.| +-++. ..+++..+ ....+.- .+.++.+|..+.+.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~--k~~-L~~~~l~~l~~~i~-~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLAS--KVP-LSDEVLNALMESIL-KNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--hcC-CcHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHc
Confidence 567889999999999 7899999999999998887 443 33332 23444444 3333333 47788777766544
Done!